Query 018398
Match_columns 356
No_of_seqs 265 out of 1806
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 14:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018398.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018398hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 19.1 54 0.004 15.9 2.9 18 263-280 3-20 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 16.4 2.4E+02 0.017 22.1 8.3 63 180-247 5-67 (248)
3 d1xioa_ f.13.1.1 (A:) Sensory 7.1 4.5E+02 0.033 19.6 17.2 17 211-227 77-93 (226)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 5.8 7.1E+02 0.052 20.7 18.8 62 141-202 264-337 (472)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 4.9 7E+02 0.051 19.4 22.3 15 202-216 282-296 (447)
6 d1q90a3 f.23.23.1 (A:248-292) 4.7 2E+02 0.015 16.0 1.9 29 261-289 4-32 (45)
7 d1iwga8 f.35.1.1 (A:513-566,A: 4.0 7E+02 0.051 18.3 14.2 18 264-281 116-133 (222)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 4.0 3.2E+02 0.023 14.2 3.1 19 114-132 17-35 (37)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 3.6 3E+02 0.022 13.3 3.7 12 220-231 17-28 (30)
10 g6rlx.1 g.1.1.1 (B:,A:) Relaxi 3.4 93 0.0067 17.7 -0.4 8 2-9 25-32 (51)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.15 E-value=54 Score=15.95 Aligned_cols=18 Identities=17% Similarity=-0.032 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018398 263 SGEWWMLLAAQSMAVGTV 280 (356)
Q Consensus 263 ~G~llaLlaa~~~a~~~v 280 (356)
.|.+++-+++++|+.|--
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 477777788888887743
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=16.42 E-value=2.4e+02 Score=22.13 Aligned_cols=63 Identities=5% Similarity=-0.133 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHhhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 018398 180 IFLFALVDASCFQGFLAQGLQRTSAGLGSVIIDSQPLSVAVLAALLFGESIGLVGAGGLVLGVIGLLL 247 (356)
Q Consensus 180 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~l~pv~~~il~~~~l~e~~~~~~~~g~~l~~~Gv~l 247 (356)
++++|+++.... ++....+..-.-..+. +.-+.+.++.++++.+|.-+.+++-=.++++.++.
T Consensus 5 ~~ll~l~~a~~~-~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fv 67 (248)
T d2r6gf1 5 WSVLGLLGLLVG-YLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFV 67 (248)
T ss_dssp HHHHHHHHHHHH-HTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-HHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHHHH
Confidence 455666653322 3333444443333333 34455666677788878777776655444444433
No 3
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=7.09 E-value=4.5e+02 Score=19.63 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=11.8
Q ss_pred HhhHHHHHHHHHHHHhC
Q 018398 211 IDSQPLSVAVLAALLFG 227 (356)
Q Consensus 211 ~~l~pv~~~il~~~~l~ 227 (356)
..+.|+....+..+...
T Consensus 77 ~lTtPlll~~l~l~~~~ 93 (226)
T d1xioa_ 77 MVTTPLLLLSLSWTAMQ 93 (226)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHH
Confidence 45678888888865543
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=5.84 E-value=7.1e+02 Score=20.68 Aligned_cols=62 Identities=8% Similarity=-0.108 Sum_probs=34.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH-------hCCCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018398 141 KAGTFFVAAFRLIPAGLLLITFASS-------QGRKL-----PSGFNAWVSIFLFALVDASCFQGFLAQGLQRT 202 (356)
Q Consensus 141 ~~~p~~~~~~r~~~~~l~~~~~~~~-------~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 202 (356)
-++|.+++++.++.-.+.-+.+..- ++++. ...++.+..+...|.........++++.+.+.
T Consensus 264 pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 337 (472)
T d1wpga4 264 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 337 (472)
T ss_dssp SCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3779999999988766555554431 11111 11334555556666555455555666665543
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.86 E-value=7e+02 Score=19.42 Aligned_cols=15 Identities=7% Similarity=-0.321 Sum_probs=6.9
Q ss_pred cChhHHHHHHhhHHH
Q 018398 202 TSAGLGSVIIDSQPL 216 (356)
Q Consensus 202 ~~~~~a~~i~~l~pv 216 (356)
.+...+..+.....+
T Consensus 282 ~~~~~~~~~~~~~~~ 296 (447)
T d1pw4a_ 282 FALDKSSWAYFLYEY 296 (447)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cccchhhhhhhcchh
Confidence 344555544444433
No 6
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.75 E-value=2e+02 Score=16.01 Aligned_cols=29 Identities=10% Similarity=-0.174 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 018398 261 WGSGEWWMLLAAQSMAVGTVMVRWVSKYS 289 (356)
Q Consensus 261 ~~~G~llaLlaa~~~a~~~v~~r~~~~~~ 289 (356)
...|.+..+.+.+.--+..++-||..++.
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777655543
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.02 E-value=7e+02 Score=18.27 Aligned_cols=18 Identities=17% Similarity=-0.054 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018398 264 GEWWMLLAAQSMAVGTVM 281 (356)
Q Consensus 264 G~llaLlaa~~~a~~~v~ 281 (356)
|....+.-.+-+++..+-
T Consensus 116 g~i~l~Gi~v~~~i~~~~ 133 (222)
T d1iwga8 116 GLLTTIGLSAKNAILIVE 133 (222)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHH
Confidence 444444444444444444
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.01 E-value=3.2e+02 Score=14.24 Aligned_cols=19 Identities=5% Similarity=0.244 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 018398 114 MLLEWAVLVSPFFFWGTAM 132 (356)
Q Consensus 114 ~~~g~l~ll~aa~~~~~~~ 132 (356)
-.+|.++.+..+++++..+
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3567777777777777544
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.62 E-value=3e+02 Score=13.35 Aligned_cols=12 Identities=25% Similarity=0.373 Sum_probs=6.5
Q ss_pred HHHHHHhCCCCc
Q 018398 220 VLAALLFGESIG 231 (356)
Q Consensus 220 il~~~~l~e~~~ 231 (356)
.+-.+|++|++.
T Consensus 17 fffaiffreppr 28 (30)
T d2axtt1 17 FFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHTSCCCC
T ss_pred HHHHHHhcCCCC
Confidence 333456677654
No 10
>g6rlx.1 g.1.1.1 (B:,A:) Relaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.43 E-value=93 Score=17.75 Aligned_cols=8 Identities=38% Similarity=0.514 Sum_probs=1.7
Q ss_pred cccccccc
Q 018398 2 AWWSSASA 9 (356)
Q Consensus 2 ~~~~~~~~ 9 (356)
.||+++++
T Consensus 25 s~w~~~~~ 32 (51)
T g6rlx.1 25 STWELYSA 32 (51)
T ss_dssp SCC-----
T ss_pred chhccchh
Confidence 46655443
Done!