Query 018399
Match_columns 356
No_of_seqs 159 out of 1543
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 2.4E-27 5.1E-32 208.3 24.2 183 112-324 43-230 (230)
2 PF08268 FBA_3: F-box associat 99.8 5.7E-18 1.2E-22 134.7 14.7 115 180-310 1-118 (129)
3 PF07734 FBA_1: F-box associat 99.8 2E-17 4.2E-22 137.3 17.8 152 180-346 1-164 (164)
4 PLN03215 ascorbic acid mannose 99.0 1.2E-07 2.6E-12 87.2 22.3 39 23-61 2-41 (373)
5 PF12937 F-box-like: F-box-lik 98.9 3.8E-10 8.3E-15 72.6 1.8 40 25-64 1-40 (47)
6 smart00256 FBOX A Receptor for 98.8 2.4E-09 5.3E-14 66.7 1.1 39 28-66 1-39 (41)
7 PF00646 F-box: F-box domain; 98.7 6.8E-09 1.5E-13 67.1 2.5 44 25-68 3-46 (48)
8 PLN02193 nitrile-specifier pro 98.1 0.00016 3.5E-09 70.3 17.3 115 152-268 244-361 (470)
9 PHA02713 hypothetical protein; 98.1 5.1E-05 1.1E-09 75.2 14.1 156 151-334 366-545 (557)
10 PHA02713 hypothetical protein; 98.1 0.00014 3E-09 72.1 15.8 88 151-243 319-407 (557)
11 PLN02153 epithiospecifier prot 98.0 0.00035 7.5E-09 65.0 17.0 113 152-267 101-234 (341)
12 TIGR03548 mutarot_permut cycli 97.9 0.00064 1.4E-08 62.7 16.7 109 152-266 88-202 (323)
13 PHA03098 kelch-like protein; P 97.9 0.00045 9.7E-09 68.4 15.9 150 151-330 357-519 (534)
14 KOG4441 Proteins containing BT 97.9 0.00024 5.2E-09 70.4 13.1 150 151-330 395-554 (571)
15 PHA02790 Kelch-like protein; P 97.8 0.001 2.2E-08 64.9 16.5 140 152-328 331-476 (480)
16 PHA03098 kelch-like protein; P 97.8 0.00055 1.2E-08 67.8 14.5 149 152-330 311-472 (534)
17 KOG4441 Proteins containing BT 97.8 0.0006 1.3E-08 67.6 14.4 148 151-330 300-460 (571)
18 PLN02153 epithiospecifier prot 97.7 0.0015 3.2E-08 60.8 16.0 108 152-265 50-174 (341)
19 PHA02790 Kelch-like protein; P 97.7 0.0011 2.5E-08 64.5 15.3 143 151-330 286-431 (480)
20 PLN02193 nitrile-specifier pro 97.7 0.0027 5.8E-08 61.8 16.8 154 152-331 193-360 (470)
21 TIGR03547 muta_rot_YjhT mutatr 97.6 0.0031 6.7E-08 58.8 15.4 112 152-268 85-237 (346)
22 KOG2120 SCF ubiquitin ligase, 97.6 2.8E-05 6E-10 68.6 1.2 41 24-64 97-137 (419)
23 PRK14131 N-acetylneuraminic ac 97.5 0.0027 5.9E-08 59.9 14.2 113 152-268 106-258 (376)
24 TIGR03548 mutarot_permut cycli 97.4 0.011 2.4E-07 54.5 16.1 149 153-330 40-202 (323)
25 TIGR03547 muta_rot_YjhT mutatr 96.9 0.041 9E-07 51.2 15.6 90 152-242 29-126 (346)
26 PRK14131 N-acetylneuraminic ac 96.9 0.052 1.1E-06 51.2 16.0 91 152-242 189-287 (376)
27 KOG0281 Beta-TrCP (transducin 96.0 0.0019 4.2E-08 57.8 0.2 42 23-64 73-118 (499)
28 KOG4693 Uncharacterized conser 95.9 0.05 1.1E-06 47.4 8.5 113 151-266 156-284 (392)
29 KOG2997 F-box protein FBX9 [Ge 95.9 0.0032 6.9E-08 56.0 1.1 45 25-69 107-156 (366)
30 KOG4693 Uncharacterized conser 95.0 0.23 5.1E-06 43.4 9.5 158 151-334 104-288 (392)
31 PF13964 Kelch_6: Kelch motif 95.0 0.078 1.7E-06 33.9 5.2 39 178-216 5-44 (50)
32 KOG0379 Kelch repeat-containin 93.6 3.1 6.8E-05 40.7 15.3 115 153-270 89-210 (482)
33 KOG0379 Kelch repeat-containin 93.0 1.1 2.3E-05 43.9 10.9 113 151-265 138-256 (482)
34 PF01344 Kelch_1: Kelch motif; 91.4 0.48 1E-05 29.6 4.4 39 178-216 5-44 (47)
35 KOG1230 Protein containing rep 91.3 4.9 0.00011 37.7 12.2 113 152-267 98-224 (521)
36 PF07762 DUF1618: Protein of u 90.0 2.6 5.7E-05 33.0 8.5 72 200-271 6-99 (131)
37 PF07646 Kelch_2: Kelch motif; 90.0 1.1 2.3E-05 28.5 5.0 41 178-218 5-48 (49)
38 KOG1230 Protein containing rep 88.3 11 0.00023 35.6 11.8 120 200-333 98-226 (521)
39 KOG4341 F-box protein containi 86.8 0.26 5.7E-06 46.0 0.8 43 21-63 68-110 (483)
40 PF13964 Kelch_6: Kelch motif 86.0 0.76 1.7E-05 29.2 2.5 22 151-172 27-48 (50)
41 KOG0274 Cdc4 and related F-box 83.9 0.32 6.9E-06 48.0 -0.1 47 21-67 104-150 (537)
42 PLN02772 guanylate kinase 81.6 11 0.00024 35.6 9.0 76 177-255 27-107 (398)
43 PF07250 Glyoxal_oxid_N: Glyox 78.4 47 0.001 29.2 12.7 172 152-349 46-223 (243)
44 PF01344 Kelch_1: Kelch motif; 78.2 1.2 2.5E-05 27.7 1.1 21 151-171 27-47 (47)
45 KOG2055 WD40 repeat protein [G 77.8 48 0.001 31.7 11.7 99 199-328 279-380 (514)
46 PF13418 Kelch_4: Galactose ox 77.6 3.4 7.4E-05 25.9 3.2 38 179-216 6-45 (49)
47 TIGR01640 F_box_assoc_1 F-box 77.1 47 0.001 28.6 13.8 31 182-219 3-33 (230)
48 PF06433 Me-amine-dh_H: Methyl 76.5 60 0.0013 30.0 11.9 118 179-328 188-326 (342)
49 PRK11138 outer membrane biogen 74.6 73 0.0016 30.0 12.8 113 178-328 63-184 (394)
50 PF13418 Kelch_4: Galactose ox 73.5 2.9 6.3E-05 26.2 2.0 21 151-171 28-48 (49)
51 smart00612 Kelch Kelch domain. 72.8 3.3 7.2E-05 25.2 2.2 23 151-173 14-36 (47)
52 smart00564 PQQ beta-propeller 72.6 12 0.00025 21.0 4.4 25 304-328 6-30 (33)
53 PF13360 PQQ_2: PQQ-like domai 72.3 61 0.0013 27.6 15.8 140 152-329 3-147 (238)
54 PF13415 Kelch_3: Galactose ox 70.7 11 0.00023 23.7 4.2 32 185-216 2-35 (49)
55 COG1520 FOG: WD40-like repeat 67.9 1.1E+02 0.0023 28.7 13.3 139 152-329 35-178 (370)
56 PF07646 Kelch_2: Kelch motif; 66.5 5.9 0.00013 24.9 2.3 21 151-171 29-49 (49)
57 PF13570 PQQ_3: PQQ-like domai 64.7 12 0.00025 22.3 3.3 26 178-209 15-40 (40)
58 TIGR03075 PQQ_enz_alc_DH PQQ-d 63.5 1.6E+02 0.0035 29.2 12.8 78 178-265 63-147 (527)
59 TIGR03074 PQQ_membr_DH membran 63.3 1.7E+02 0.0038 30.5 13.3 32 177-214 187-220 (764)
60 PF01011 PQQ: PQQ enzyme repea 60.2 20 0.00042 21.1 3.7 24 306-329 2-25 (38)
61 PRK11028 6-phosphogluconolacto 56.8 1.6E+02 0.0034 26.8 14.0 146 152-329 57-214 (330)
62 COG4257 Vgb Streptogramin lyas 54.2 24 0.00053 31.5 4.6 63 152-220 254-317 (353)
63 PF03088 Str_synth: Strictosid 53.9 31 0.00068 25.1 4.5 18 313-330 36-53 (89)
64 PF07893 DUF1668: Protein of u 53.6 89 0.0019 29.0 8.7 86 153-243 200-297 (342)
65 PF08268 FBA_3: F-box associat 53.5 42 0.00091 26.0 5.7 39 313-351 19-61 (129)
66 COG2706 3-carboxymuconate cycl 52.6 1.9E+02 0.0042 26.7 15.7 113 199-332 166-286 (346)
67 KOG2502 Tub family proteins [G 51.8 10 0.00022 34.8 2.0 39 23-61 43-89 (355)
68 PF13360 PQQ_2: PQQ-like domai 50.3 1.6E+02 0.0034 25.0 15.7 54 153-212 87-144 (238)
69 PRK11138 outer membrane biogen 49.1 2.3E+02 0.005 26.6 16.2 108 178-328 250-359 (394)
70 PF13013 F-box-like_2: F-box-l 46.8 9.7 0.00021 28.9 1.0 30 24-53 21-50 (109)
71 TIGR03300 assembly_YfgL outer 46.5 2.5E+02 0.0053 26.1 16.5 54 153-212 201-263 (377)
72 TIGR03300 assembly_YfgL outer 46.0 2.5E+02 0.0054 26.1 12.0 28 178-211 59-86 (377)
73 PF12768 Rax2: Cortical protei 44.5 86 0.0019 28.3 6.8 62 151-217 15-81 (281)
74 PF08450 SGL: SMP-30/Gluconola 43.7 2.1E+02 0.0046 24.6 16.3 108 184-329 11-129 (246)
75 KOG3926 F-box proteins [Amino 39.6 14 0.00031 32.7 1.0 41 21-61 198-239 (332)
76 KOG0291 WD40-repeat-containing 37.7 4.9E+02 0.011 27.0 16.3 77 179-255 250-339 (893)
77 KOG4152 Host cell transcriptio 35.4 4.1E+02 0.0088 26.3 9.8 65 153-217 231-311 (830)
78 PF15408 PH_7: Pleckstrin homo 35.4 12 0.00026 26.7 -0.1 32 35-66 65-100 (104)
79 KOG0289 mRNA splicing factor [ 34.4 4.3E+02 0.0093 25.4 10.1 102 150-265 367-469 (506)
80 PF02897 Peptidase_S9_N: Proly 33.4 4.2E+02 0.009 25.0 18.4 147 152-330 252-412 (414)
81 KOG1963 WD40 repeat protein [G 32.6 5.3E+02 0.012 26.9 10.7 97 202-323 434-539 (792)
82 PF10282 Lactonase: Lactonase, 32.1 4.1E+02 0.0088 24.5 16.2 124 184-331 154-286 (345)
83 PF02191 OLF: Olfactomedin-lik 31.6 3.7E+02 0.0079 23.8 16.0 38 178-220 72-110 (250)
84 COG4946 Uncharacterized protei 26.9 75 0.0016 30.7 3.5 39 294-332 267-305 (668)
85 KOG0649 WD40 repeat protein [G 24.8 2.1E+02 0.0046 25.3 5.6 35 302-337 124-158 (325)
86 PRK11028 6-phosphogluconolacto 22.2 5.9E+02 0.013 23.0 14.1 95 152-257 12-113 (330)
87 COG3055 Uncharacterized protei 21.9 1.7E+02 0.0037 27.3 4.7 63 154-216 60-129 (381)
88 PF09372 PRANC: PRANC domain; 21.6 51 0.0011 24.2 1.2 25 23-47 70-94 (97)
89 PF07370 DUF1489: Protein of u 21.4 57 0.0012 25.8 1.4 29 180-209 43-71 (137)
90 PF07893 DUF1668: Protein of u 21.2 6.6E+02 0.014 23.2 14.7 115 200-330 86-215 (342)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.96 E-value=2.4e-27 Score=208.27 Aligned_cols=183 Identities=24% Similarity=0.379 Sum_probs=135.5
Q ss_pred EEEEeeeCCCCCeEEEEEEEeecCCCCCccccccccccCCceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEe
Q 018399 112 VFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVT 191 (356)
Q Consensus 112 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~ 191 (356)
.+|||||+.+++||||++...... . ....++||++++++||.+...+........+|++||++||++
T Consensus 43 ~~~~G~d~~~~~YKVv~~~~~~~~---~----------~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~ 109 (230)
T TIGR01640 43 TYFLGYDPIEKQYKVLCFSDRSGN---R----------NQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLA 109 (230)
T ss_pred eEEEeecccCCcEEEEEEEeecCC---C----------CCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEE
Confidence 579999999999999999753210 0 146899999999999998743333232334999999999999
Q ss_pred ccCCCCCccEEEEEECCCceee-eeCCCCCCCCCcceeeEEEECCeEEEEEecC-CCeEEEEEeccCCCCcceeeEEEEc
Q 018399 192 RPRRYSPVRGIVSFDIADEQFR-EVPKPDCGGLNRCNYHLTVLSGCLSVAVYGN-YGKLEIWVMKDYNVKESWAKELNIG 269 (356)
Q Consensus 192 ~~~~~~~~~~Il~fDl~~e~f~-~i~~P~~~~~~~~~~~l~~~~g~L~~~~~~~-~~~~~iW~L~~~g~~~~W~~~~~I~ 269 (356)
..........|++||+++|+|+ .+++|...........|++++|+||++.... ...++||+|++++ +++|+++++|+
T Consensus 110 ~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~-~~~W~k~~~i~ 188 (230)
T TIGR01640 110 YTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAG-KQEWSKLFTVP 188 (230)
T ss_pred EECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEEEECCCC-CCceeEEEEEc
Confidence 7522112238999999999999 5999875432223468999999999998753 3569999999997 45699999998
Q ss_pred cCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEEEcC--cE-EEEEeCCCC
Q 018399 270 AYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKS--RV-LVSYDPKRR 324 (356)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~--~~-l~~Yd~~~~ 324 (356)
.....++ . ....++++.++|+|++...+ +. ++.||++++
T Consensus 189 ~~~~~~~---------------~-~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 189 IPPLPDL---------------V-DDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred Ccchhhh---------------h-hheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence 6211110 0 11558899999999998764 44 999999874
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.78 E-value=5.7e-18 Score=134.74 Aligned_cols=115 Identities=26% Similarity=0.465 Sum_probs=88.6
Q ss_pred ceEEcceEEEEeccCCCCCccEEEEEECCCceeeeeCCCCCCCCCcceeeEEEECCeEEEEEecCC---CeEEEEEeccC
Q 018399 180 EALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNY---GKLEIWVMKDY 256 (356)
Q Consensus 180 ~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~~P~~~~~~~~~~~l~~~~g~L~~~~~~~~---~~~~iW~L~~~ 256 (356)
|+++||++||++.. .......|++||+++|+|+.|++|...........|++++|+||++..... ..++||+|+|+
T Consensus 1 gicinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 1 GICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred CEEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 68999999999987 344568999999999999999999322223446789999999999987643 36999999999
Q ss_pred CCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEE
Q 018399 257 NVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLE 310 (356)
Q Consensus 257 g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~ 310 (356)
+ +++|++++.+-..... .......+.++++.++|||++.
T Consensus 80 ~-k~~Wsk~~~~lp~~~~--------------~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 80 E-KQEWSKKHIVLPPSWQ--------------HFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred c-cceEEEEEEECChHHh--------------cccCCcEEEEEEEcCCCEEEEE
Confidence 7 7899988765442111 1011257889999999999987
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.78 E-value=2e-17 Score=137.25 Aligned_cols=152 Identities=28% Similarity=0.399 Sum_probs=102.2
Q ss_pred ceEEcceEEEEeccCCCCCccEEEEEECCCcee-eeeCCCCCCCCCcceeeEEEE-CCeEEEEEecC-CCeEEEEEeccC
Q 018399 180 EALVKGRLHWVTRPRRYSPVRGIVSFDIADEQF-REVPKPDCGGLNRCNYHLTVL-SGCLSVAVYGN-YGKLEIWVMKDY 256 (356)
Q Consensus 180 ~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f-~~i~~P~~~~~~~~~~~l~~~-~g~L~~~~~~~-~~~~~iW~L~~~ 256 (356)
+|++||++||++..........|++||+++|+| +.+++|...........|.++ +|+||++.... ...++||+|+++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 689999999999874333333899999999999 889999865422345667544 78999997543 446999999977
Q ss_pred CC-CcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEEEc---C----cEEEEEeCCCCcEEE
Q 018399 257 NV-KESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK---S----RVLVSYDPKRRTFNE 328 (356)
Q Consensus 257 g~-~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~---~----~~l~~Yd~~~~~~~~ 328 (356)
|. +++|++.++|++...... + ....-..+.+.+++++++... + ..++.|+ +++.+++
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~------~--------~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~ 145 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSL------F--------FHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIE 145 (164)
T ss_pred ccCcceEEEEEEEecCCCCCc------c--------cccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEE
Confidence 53 789999999996422110 0 000011222345556666532 1 3577888 7788888
Q ss_pred EEEeCC-CCeEEEEEeecC
Q 018399 329 FVFKGT-PNWFQTIVHQGS 346 (356)
Q Consensus 329 v~~~~~-~~~~~~~~y~~S 346 (356)
+.+... ..+.....|++|
T Consensus 146 ~~~~~~~~~~~~~~~YvpS 164 (164)
T PF07734_consen 146 VDIEDKSSCWPSICNYVPS 164 (164)
T ss_pred cccccCCCCCCCEEEECCC
Confidence 877432 345567788887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.02 E-value=1.2e-07 Score=87.20 Aligned_cols=39 Identities=33% Similarity=0.595 Sum_probs=35.8
Q ss_pred CCCCCCcHHHHHHHHccCC-cccccceeecchhhhhhcCC
Q 018399 23 TGMETLPREIVLHILLRLP-ITSLVQFKFVCRAWRALAQD 61 (356)
Q Consensus 23 ~~~~~Lp~Dll~eIL~RLP-~~sl~r~r~VcK~W~~li~~ 61 (356)
+.|+.||+|||..|..||| .-+++|||+||++||+.+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 4689999999999999998 66999999999999998875
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.93 E-value=3.8e-10 Score=72.62 Aligned_cols=40 Identities=40% Similarity=0.772 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHccCCcccccceeecchhhhhhcCCHHH
Q 018399 25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64 (356)
Q Consensus 25 ~~~Lp~Dll~eIL~RLP~~sl~r~r~VcK~W~~li~~~~F 64 (356)
+..||+|++.+||.+||+++++++++|||+|++++.++.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 4689999999999999999999999999999999998843
No 6
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.75 E-value=2.4e-09 Score=66.65 Aligned_cols=39 Identities=36% Similarity=0.578 Sum_probs=36.8
Q ss_pred CcHHHHHHHHccCCcccccceeecchhhhhhcCCHHHHH
Q 018399 28 LPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLAN 66 (356)
Q Consensus 28 Lp~Dll~eIL~RLP~~sl~r~r~VcK~W~~li~~~~F~~ 66 (356)
||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999987754
No 7
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.72 E-value=6.8e-09 Score=67.10 Aligned_cols=44 Identities=32% Similarity=0.551 Sum_probs=37.4
Q ss_pred CCCCcHHHHHHHHccCCcccccceeecchhhhhhcCCHHHHHHh
Q 018399 25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLH 68 (356)
Q Consensus 25 ~~~Lp~Dll~eIL~RLP~~sl~r~r~VcK~W~~li~~~~F~~~~ 68 (356)
+..||+|++.+||.+||+++++++++|||+|++++.++.+-..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 45799999999999999999999999999999999999886654
No 8
>PLN02193 nitrile-specifier protein
Probab=98.13 E-value=0.00016 Score=70.26 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=75.3
Q ss_pred ceEEEEEcCCCCceecCCCCce--eecCCCceEEcceEEEEeccCCCCCccEEEEEECCCceeeeeCCCCCCCCCcceee
Q 018399 152 SDVQVYTVGSPAWRSKGKLAYQ--FVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYH 229 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~~p~~--~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~~P~~~~~~~~~~~ 229 (356)
..+++|+..+++|+.+..++.. .......+.+++.||.+...........+.+||+.+.+|..++.|...........
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~ 323 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAG 323 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcE
Confidence 5788999999999998754211 11233456789999998865322233568899999999999876432111112335
Q ss_pred EEEECCeEEEEEecC-CCeEEEEEeccCCCCcceeeEEEE
Q 018399 230 LTVLSGCLSVAVYGN-YGKLEIWVMKDYNVKESWAKELNI 268 (356)
Q Consensus 230 l~~~~g~L~~~~~~~-~~~~~iW~L~~~g~~~~W~~~~~I 268 (356)
++.++|+++++.... ...-++|+++-. +.+|++....
T Consensus 324 ~~~~~gkiyviGG~~g~~~~dv~~yD~~--t~~W~~~~~~ 361 (470)
T PLN02193 324 LEVVQGKVWVVYGFNGCEVDDVHYYDPV--QDKWTQVETF 361 (470)
T ss_pred EEEECCcEEEEECCCCCccCceEEEECC--CCEEEEeccC
Confidence 667889998876432 123468887653 5689986543
No 9
>PHA02713 hypothetical protein; Provisional
Probab=98.13 E-value=5.1e-05 Score=75.18 Aligned_cols=156 Identities=9% Similarity=0.145 Sum_probs=96.2
Q ss_pred CceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCCC------------------CCccEEEEEECCCcee
Q 018399 151 RSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRY------------------SPVRGIVSFDIADEQF 212 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~------------------~~~~~Il~fDl~~e~f 212 (356)
...+++|+..++.|..++.+|.... ....+.++|.||-++..... .....+.+||.++++|
T Consensus 366 ~~sve~Ydp~~~~W~~~~~mp~~r~-~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W 444 (557)
T PHA02713 366 ERTIECYTMGDDKWKMLPDMPIALS-SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW 444 (557)
T ss_pred CceEEEEECCCCeEEECCCCCcccc-cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE
Confidence 3579999999999999987775433 23456789999999864211 0135699999999999
Q ss_pred eeeC-CCCCCCCCcceeeEEEECCeEEEEEecCCCeEEEEEeccCCC-C-cceeeEEEEccCCCcCccccCCCcchhhcc
Q 018399 213 REVP-KPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNV-K-ESWAKELNIGAYIPKGLKQSLDRPLKIWKN 289 (356)
Q Consensus 213 ~~i~-~P~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~iW~L~~~g~-~-~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~ 289 (356)
..++ +|... ....+++++|+|+++..........=..+-|.. + .+|+..-.++...
T Consensus 445 ~~v~~m~~~r----~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r----------------- 503 (557)
T PHA02713 445 ETLPNFWTGT----IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL----------------- 503 (557)
T ss_pred eecCCCCccc----ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc-----------------
Confidence 9874 33322 234578999999998654211100111223432 3 4799765443210
Q ss_pred cCCCceeEEEEEecCCeEEEEEcC---cEEEEEeCCCCcEEEEEEeCC
Q 018399 290 SLNGRVVRVVCILEKGEILLEYKS---RVLVSYDPKRRTFNEFVFKGT 334 (356)
Q Consensus 290 ~~~~~~~~~~~~~~~g~il~~~~~---~~l~~Yd~~~~~~~~v~~~~~ 334 (356)
.....+ .-+|.|.+..+. ..+-.||+++++|..+.-+..
T Consensus 504 ----~~~~~~--~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 504 ----SALHTI--LHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred ----ccceeE--EECCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 011111 123455555331 247789999999999865443
No 10
>PHA02713 hypothetical protein; Provisional
Probab=98.06 E-value=0.00014 Score=72.09 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=64.7
Q ss_pred CceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCCceeeeeC-CCCCCCCCcceee
Q 018399 151 RSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYH 229 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~-~P~~~~~~~~~~~ 229 (356)
...++.|+..++.|..++.+|... .....+.++|.+|-++..........+.+||..+.+|..++ +|.... ...
T Consensus 319 ~~~v~~Yd~~~n~W~~~~~m~~~R-~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~----~~~ 393 (557)
T PHA02713 319 LNKVYKINIENKIHVELPPMIKNR-CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALS----SYG 393 (557)
T ss_pred cceEEEEECCCCeEeeCCCCcchh-hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccc----ccc
Confidence 357899999999999998776432 23456789999999987632223356899999999999875 344321 235
Q ss_pred EEEECCeEEEEEec
Q 018399 230 LTVLSGCLSVAVYG 243 (356)
Q Consensus 230 l~~~~g~L~~~~~~ 243 (356)
.++++|+|+++...
T Consensus 394 ~~~~~g~IYviGG~ 407 (557)
T PHA02713 394 MCVLDQYIYIIGGR 407 (557)
T ss_pred EEEECCEEEEEeCC
Confidence 67889999998654
No 11
>PLN02153 epithiospecifier protein
Probab=98.03 E-value=0.00035 Score=65.05 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=70.3
Q ss_pred ceEEEEEcCCCCceecCCC-----CceeecCCCceEEcceEEEEeccCCCC------CccEEEEEECCCceeeeeCCCCC
Q 018399 152 SDVQVYTVGSPAWRSKGKL-----AYQFVRRPSEALVKGRLHWVTRPRRYS------PVRGIVSFDIADEQFREVPKPDC 220 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~~-----p~~~~~~~~~v~~~G~lywl~~~~~~~------~~~~Il~fDl~~e~f~~i~~P~~ 220 (356)
..+++|+..+++|+.++.+ |.. ......+..+|.||.+....... .-..+.+||+.+.+|..++.+..
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~-R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~ 179 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEA-RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGE 179 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCC-ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCC
Confidence 5789999999999988654 221 12334577899999887642111 11368899999999998864321
Q ss_pred CCCCcceeeEEEECCeEEEEEecC----------CCeEEEEEeccCCCCcceeeEEE
Q 018399 221 GGLNRCNYHLTVLSGCLSVAVYGN----------YGKLEIWVMKDYNVKESWAKELN 267 (356)
Q Consensus 221 ~~~~~~~~~l~~~~g~L~~~~~~~----------~~~~~iW~L~~~g~~~~W~~~~~ 267 (356)
.........++.++|+++++.... ...-++++++-. +.+|+++..
T Consensus 180 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~ 234 (341)
T PLN02153 180 NFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVET 234 (341)
T ss_pred CCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcC--CCcEEeccc
Confidence 001112234677899998874321 011246665532 568998753
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.93 E-value=0.00064 Score=62.75 Aligned_cols=109 Identities=20% Similarity=0.193 Sum_probs=72.9
Q ss_pred ceEEEEEcCCCCc----eecCCCCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCCceeeeeC-CCCCCCCCcc
Q 018399 152 SDVQVYTVGSPAW----RSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRC 226 (356)
Q Consensus 152 ~~~~Vyss~t~~W----r~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~-~P~~~~~~~~ 226 (356)
..++.|+..++.| +.++.+|.... ...++.++|.||.+...........+.+||+.+++|..++ +|.... .
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~-~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r---~ 163 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFE-NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR---V 163 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCcc-CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC---C
Confidence 5788999999988 56666654432 3456778999999987532223467999999999999985 564221 1
Q ss_pred eeeEEEECCeEEEEEecC-CCeEEEEEeccCCCCcceeeEE
Q 018399 227 NYHLTVLSGCLSVAVYGN-YGKLEIWVMKDYNVKESWAKEL 266 (356)
Q Consensus 227 ~~~l~~~~g~L~~~~~~~-~~~~~iW~L~~~g~~~~W~~~~ 266 (356)
...++.++++|+++.... ....++|+.+-. +.+|+..-
T Consensus 164 ~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~--~~~W~~~~ 202 (323)
T TIGR03548 164 QPVCVKLQNELYVFGGGSNIAYTDGYKYSPK--KNQWQKVA 202 (323)
T ss_pred cceEEEECCEEEEEcCCCCccccceEEEecC--CCeeEECC
Confidence 234567899999886542 223456666532 56898654
No 13
>PHA03098 kelch-like protein; Provisional
Probab=97.89 E-value=0.00045 Score=68.41 Aligned_cols=150 Identities=15% Similarity=0.200 Sum_probs=94.0
Q ss_pred CceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCC-CCCccEEEEEECCCceeeeeC-CCCCCCCCccee
Q 018399 151 RSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNY 228 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~Il~fDl~~e~f~~i~-~P~~~~~~~~~~ 228 (356)
...+++|+..+++|+..+.+|... .....+.++|.+|-++.... ......+..||+.+++|..++ +|.... ..
T Consensus 357 ~~~v~~yd~~~~~W~~~~~lp~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~----~~ 431 (534)
T PHA03098 357 LNTVESWKPGESKWREEPPLIFPR-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY----GG 431 (534)
T ss_pred cceEEEEcCCCCceeeCCCcCcCC-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc----Cc
Confidence 357899999999999988776432 23445778999999986421 122367999999999999875 343221 23
Q ss_pred eEEEECCeEEEEEecCC-C----eEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEec
Q 018399 229 HLTVLSGCLSVAVYGNY-G----KLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILE 303 (356)
Q Consensus 229 ~l~~~~g~L~~~~~~~~-~----~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (356)
..+..+|+|+++..... . .-.+|+.+-. +.+|+..-..+. +. + .... ++ -
T Consensus 432 ~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~--~~~W~~~~~~~~--~r------------~-------~~~~-~~-~ 486 (534)
T PHA03098 432 CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPV--TNKWTELSSLNF--PR------------I-------NASL-CI-F 486 (534)
T ss_pred eEEEECCEEEEECCccCCCCCcccceEEEecCC--CCceeeCCCCCc--cc------------c-------cceE-EE-E
Confidence 45678899988864321 1 1236665542 568987532221 00 0 0011 11 2
Q ss_pred CCeEEEEEc------CcEEEEEeCCCCcEEEEE
Q 018399 304 KGEILLEYK------SRVLVSYDPKRRTFNEFV 330 (356)
Q Consensus 304 ~g~il~~~~------~~~l~~Yd~~~~~~~~v~ 330 (356)
++.|++..+ ...+..||+++++|+.+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 456655532 246899999999998864
No 14
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.85 E-value=0.00024 Score=70.39 Aligned_cols=150 Identities=15% Similarity=0.215 Sum_probs=96.7
Q ss_pred CceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCCCC-CccEEEEEECCCceeeeeC-CCCCCCCCccee
Q 018399 151 RSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYS-PVRGIVSFDIADEQFREVP-KPDCGGLNRCNY 228 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~Il~fDl~~e~f~~i~-~P~~~~~~~~~~ 228 (356)
...+|.|+..++.|...+.++. .......+.++|.||-+....... .-..+.+||..+++|..++ ++..+ ...
T Consensus 395 l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R----~~~ 469 (571)
T KOG4441|consen 395 LNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR----SGF 469 (571)
T ss_pred cccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc----ccc
Confidence 4679999999999999987766 333456788999999998853333 4478999999999999984 44432 234
Q ss_pred eEEEECCeEEEEEecCC-CeEEEEEeccCC-CCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCe
Q 018399 229 HLTVLSGCLSVAVYGNY-GKLEIWVMKDYN-VKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE 306 (356)
Q Consensus 229 ~l~~~~g~L~~~~~~~~-~~~~iW~L~~~g-~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 306 (356)
.+++++|+|+++..... ..++- .+-|. ....|+..-.+... . ..+-+..-++.
T Consensus 470 g~a~~~~~iYvvGG~~~~~~~~~--VE~ydp~~~~W~~v~~m~~~--r---------------------s~~g~~~~~~~ 524 (571)
T KOG4441|consen 470 GVAVLNGKIYVVGGFDGTSALSS--VERYDPETNQWTMVAPMTSP--R---------------------SAVGVVVLGGK 524 (571)
T ss_pred eEEEECCEEEEECCccCCCccce--EEEEcCCCCceeEcccCccc--c---------------------ccccEEEECCE
Confidence 58999999999975432 11211 22222 15679987333321 0 00111112233
Q ss_pred EEEEEc------CcEEEEEeCCCCcEEEEE
Q 018399 307 ILLEYK------SRVLVSYDPKRRTFNEFV 330 (356)
Q Consensus 307 il~~~~------~~~l~~Yd~~~~~~~~v~ 330 (356)
+.+.-+ -..+-.||+++++|+.+.
T Consensus 525 ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 525 LYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred EEEEecccCccccceeEEcCCCCCceeeCC
Confidence 333321 146888999999999864
No 15
>PHA02790 Kelch-like protein; Provisional
Probab=97.80 E-value=0.001 Score=64.86 Aligned_cols=140 Identities=14% Similarity=0.124 Sum_probs=88.7
Q ss_pred ceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCCceeeeeCCCCCCCCCcceeeEE
Q 018399 152 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLT 231 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~~P~~~~~~~~~~~l~ 231 (356)
..++.|+..+++|..++.+|.... ...++.++|.||-++.... ....+..||..+++|..++.++... .....+
T Consensus 331 ~sve~ydp~~n~W~~~~~l~~~r~-~~~~~~~~g~IYviGG~~~--~~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~ 404 (480)
T PHA02790 331 TSVERWFHGDAAWVNMPSLLKPRC-NPAVASINNVIYVIGGHSE--TDTTTEYLLPNHDQWQFGPSTYYPH---YKSCAL 404 (480)
T ss_pred CceEEEECCCCeEEECCCCCCCCc-ccEEEEECCEEEEecCcCC--CCccEEEEeCCCCEEEeCCCCCCcc---ccceEE
Confidence 468899999999999987764332 3456789999999987521 2256789999999999985433221 123567
Q ss_pred EECCeEEEEEecCCCeEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEEE
Q 018399 232 VLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEY 311 (356)
Q Consensus 232 ~~~g~L~~~~~~~~~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~ 311 (356)
+++|+|+++... .++.- .. +..|+..-.+.. +. ... -++.-+|.|.+..
T Consensus 405 ~~~~~IYv~GG~----~e~yd---p~-~~~W~~~~~m~~--~r-------------------~~~--~~~v~~~~IYviG 453 (480)
T PHA02790 405 VFGRRLFLVGRN----AEFYC---ES-SNTWTLIDDPIY--PR-------------------DNP--ELIIVDNKLLLIG 453 (480)
T ss_pred EECCEEEEECCc----eEEec---CC-CCcEeEcCCCCC--Cc-------------------ccc--EEEEECCEEEEEC
Confidence 899999988642 33322 22 568996532221 10 011 1112234555543
Q ss_pred c------CcEEEEEeCCCCcEEE
Q 018399 312 K------SRVLVSYDPKRRTFNE 328 (356)
Q Consensus 312 ~------~~~l~~Yd~~~~~~~~ 328 (356)
+ ...+-.||+++++|..
T Consensus 454 G~~~~~~~~~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRTYSWNI 476 (480)
T ss_pred CcCCCcccceEEEEECCCCeEEe
Confidence 2 1357899999999975
No 16
>PHA03098 kelch-like protein; Provisional
Probab=97.79 E-value=0.00055 Score=67.78 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=93.2
Q ss_pred ceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCCceeeeeC-CCCCCCCCcceeeE
Q 018399 152 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHL 230 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~-~P~~~~~~~~~~~l 230 (356)
..+..|+..++.|..++.+|... .....+.++|.+|-++..........+..||+.+.+|..++ +|... .....
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R-~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r----~~~~~ 385 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPR-KNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR----YNPCV 385 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCccc-ccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC----ccceE
Confidence 46889999999999987766332 23456788999999987532223456889999999999874 44432 12345
Q ss_pred EEECCeEEEEEecC--C-CeEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeE
Q 018399 231 TVLSGCLSVAVYGN--Y-GKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEI 307 (356)
Q Consensus 231 ~~~~g~L~~~~~~~--~-~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 307 (356)
+.++|+++++.... . ..-.+++.+-. +.+|...-.++.. . ....++..++.|
T Consensus 386 ~~~~~~iYv~GG~~~~~~~~~~v~~yd~~--t~~W~~~~~~p~~--r---------------------~~~~~~~~~~~i 440 (534)
T PHA03098 386 VNVNNLIYVIGGISKNDELLKTVECFSLN--TNKWSKGSPLPIS--H---------------------YGGCAIYHDGKI 440 (534)
T ss_pred EEECCEEEEECCcCCCCcccceEEEEeCC--CCeeeecCCCCcc--c---------------------cCceEEEECCEE
Confidence 77899999886531 1 12245555432 4679875432211 0 001112223445
Q ss_pred EEEEc---------CcEEEEEeCCCCcEEEEE
Q 018399 308 LLEYK---------SRVLVSYDPKRRTFNEFV 330 (356)
Q Consensus 308 l~~~~---------~~~l~~Yd~~~~~~~~v~ 330 (356)
++..+ -..+..||+++++|+.+.
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 44422 124899999999999874
No 17
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.77 E-value=0.0006 Score=67.64 Aligned_cols=148 Identities=18% Similarity=0.229 Sum_probs=100.4
Q ss_pred CceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccC-CCCCccEEEEEECCCceeeeeC-CCCCCCCCccee
Q 018399 151 RSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPR-RYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNY 228 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~-~~~~~~~Il~fDl~~e~f~~i~-~P~~~~~~~~~~ 228 (356)
...++.|+..++.|..++.+|.... ....+.++|.+|-+++.. +......+..||..+.+|..++ ++.. ....
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~----R~~~ 374 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK----RSDF 374 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcccc-cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc----cccc
Confidence 4788999999999999998885433 456788999999999875 3445578999999999998853 2222 2345
Q ss_pred eEEEECCeEEEEEecC----CCeEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecC
Q 018399 229 HLTVLSGCLSVAVYGN----YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEK 304 (356)
Q Consensus 229 ~l~~~~g~L~~~~~~~----~~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (356)
.+++++|.|+++.... ..+++-+--+ +.+|...-.... .....-+..-+
T Consensus 375 ~v~~l~g~iYavGG~dg~~~l~svE~YDp~----~~~W~~va~m~~-----------------------~r~~~gv~~~~ 427 (571)
T KOG4441|consen 375 GVAVLDGKLYAVGGFDGEKSLNSVECYDPV----TNKWTPVAPMLT-----------------------RRSGHGVAVLG 427 (571)
T ss_pred eeEEECCEEEEEeccccccccccEEEecCC----CCcccccCCCCc-----------------------ceeeeEEEEEC
Confidence 7899999999997653 1233333211 457886543221 01222233345
Q ss_pred CeEEEEEc----C---cEEEEEeCCCCcEEEEE
Q 018399 305 GEILLEYK----S---RVLVSYDPKRRTFNEFV 330 (356)
Q Consensus 305 g~il~~~~----~---~~l~~Yd~~~~~~~~v~ 330 (356)
|.|.+..+ . ..+..||+.+++|+.+.
T Consensus 428 g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 428 GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred CEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 66666532 1 46899999999999864
No 18
>PLN02153 epithiospecifier protein
Probab=97.75 E-value=0.0015 Score=60.83 Aligned_cols=108 Identities=11% Similarity=0.047 Sum_probs=69.2
Q ss_pred ceEEEEEcCCCCceecCCCCcee---ecCCCceEEcceEEEEeccCCCCCccEEEEEECCCceeeeeCC------CCCCC
Q 018399 152 SDVQVYTVGSPAWRSKGKLAYQF---VRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPK------PDCGG 222 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~~p~~~---~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~~------P~~~~ 222 (356)
..+++|+..++.|+.+..++... ......+.+++.||-+........-..+.+||+.+.+|..++. |..+
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R- 128 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR- 128 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc-
Confidence 46889999999999876432111 1123467889999999875322223568999999999998753 2211
Q ss_pred CCcceeeEEEECCeEEEEEecCC--------CeEEEEEeccCCCCcceeeE
Q 018399 223 LNRCNYHLTVLSGCLSVAVYGNY--------GKLEIWVMKDYNVKESWAKE 265 (356)
Q Consensus 223 ~~~~~~~l~~~~g~L~~~~~~~~--------~~~~iW~L~~~g~~~~W~~~ 265 (356)
.....+..+++|+++..... ..-++|+.+-. +.+|..+
T Consensus 129 ---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~--~~~W~~l 174 (341)
T PLN02153 129 ---TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIA--DGKWVQL 174 (341)
T ss_pred ---eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECC--CCeEeeC
Confidence 12345678899888754321 11256666532 4679864
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=97.72 E-value=0.0011 Score=64.55 Aligned_cols=143 Identities=12% Similarity=0.081 Sum_probs=92.5
Q ss_pred CceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCCceeeeeC-CCCCCCCCcceee
Q 018399 151 RSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYH 229 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~-~P~~~~~~~~~~~ 229 (356)
...++.|+..++.|..++.++.... ....+.++|.+|-++... ....+-.||..+++|..++ +|... ....
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r~-~~~~v~~~~~iYviGG~~---~~~sve~ydp~~n~W~~~~~l~~~r----~~~~ 357 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPRL-YASGVPANNKLYVVGGLP---NPTSVERWFHGDAAWVNMPSLLKPR----CNPA 357 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchhh-cceEEEECCEEEEECCcC---CCCceEEEECCCCeEEECCCCCCCC----cccE
Confidence 3578899999999999987764322 244678999999998752 1245789999999998874 34322 2346
Q ss_pred EEEECCeEEEEEecC--CCeEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeE
Q 018399 230 LTVLSGCLSVAVYGN--YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEI 307 (356)
Q Consensus 230 l~~~~g~L~~~~~~~--~~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i 307 (356)
.++++|+|+++.... ...++.+- .. +..|+..-..+. + .....++.-+|.|
T Consensus 358 ~~~~~g~IYviGG~~~~~~~ve~yd---p~-~~~W~~~~~m~~--~---------------------r~~~~~~~~~~~I 410 (480)
T PHA02790 358 VASINNVIYVIGGHSETDTTTEYLL---PN-HDQWQFGPSTYY--P---------------------HYKSCALVFGRRL 410 (480)
T ss_pred EEEECCEEEEecCcCCCCccEEEEe---CC-CCEEEeCCCCCC--c---------------------cccceEEEECCEE
Confidence 788999999986642 23344442 22 468986422211 0 0011122334566
Q ss_pred EEEEcCcEEEEEeCCCCcEEEEE
Q 018399 308 LLEYKSRVLVSYDPKRRTFNEFV 330 (356)
Q Consensus 308 l~~~~~~~l~~Yd~~~~~~~~v~ 330 (356)
.+..+ ..-.||+++++|+.+.
T Consensus 411 Yv~GG--~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 411 FLVGR--NAEFYCESSNTWTLID 431 (480)
T ss_pred EEECC--ceEEecCCCCcEeEcC
Confidence 66543 3677999999999865
No 20
>PLN02193 nitrile-specifier protein
Probab=97.66 E-value=0.0027 Score=61.82 Aligned_cols=154 Identities=10% Similarity=0.079 Sum_probs=90.3
Q ss_pred ceEEEEEcCCCCceecCC---CCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCCceeeeeCC----CCCCCCC
Q 018399 152 SDVQVYTVGSPAWRSKGK---LAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPK----PDCGGLN 224 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~---~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~~----P~~~~~~ 224 (356)
..+++|+.++++|..+.. .|.........+.+++.||-+...........+.+||+.+.+|..+.. |..+
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R--- 269 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPR--- 269 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCc---
Confidence 468899999999998653 232111233467889999998865322233578999999999998853 2211
Q ss_pred cceeeEEEECCeEEEEEecC--CCeEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEe
Q 018399 225 RCNYHLTVLSGCLSVAVYGN--YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCIL 302 (356)
Q Consensus 225 ~~~~~l~~~~g~L~~~~~~~--~~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (356)
....++..+++|+++.... ...-++|+.+-. +.+|...-.-.. .+. + .... .+++.
T Consensus 270 -~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~-~~~--------~---------R~~~-~~~~~ 327 (470)
T PLN02193 270 -SFHSMAADEENVYVFGGVSATARLKTLDSYNIV--DKKWFHCSTPGD-SFS--------I---------RGGA-GLEVV 327 (470)
T ss_pred -cceEEEEECCEEEEECCCCCCCCcceEEEEECC--CCEEEeCCCCCC-CCC--------C---------CCCc-EEEEE
Confidence 1234566889988886432 122346665532 467986422110 000 0 0001 11111
Q ss_pred cCCeEEEEEc-----CcEEEEEeCCCCcEEEEEE
Q 018399 303 EKGEILLEYK-----SRVLVSYDPKRRTFNEFVF 331 (356)
Q Consensus 303 ~~g~il~~~~-----~~~l~~Yd~~~~~~~~v~~ 331 (356)
++.|++... ...+..||+++++|+.+..
T Consensus 328 -~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 328 -QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVET 360 (470)
T ss_pred -CCcEEEEECCCCCccCceEEEECCCCEEEEecc
Confidence 344554422 1458999999999999853
No 21
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.57 E-value=0.0031 Score=58.76 Aligned_cols=112 Identities=16% Similarity=0.162 Sum_probs=70.6
Q ss_pred ceEEEEEcCCCCceecCC-CCceeecCCCce-EEcceEEEEeccCCCC--------------------------------
Q 018399 152 SDVQVYTVGSPAWRSKGK-LAYQFVRRPSEA-LVKGRLHWVTRPRRYS-------------------------------- 197 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~-~p~~~~~~~~~v-~~~G~lywl~~~~~~~-------------------------------- 197 (356)
..+++|+..+++|+.++. +|... ....++ ..+|.||-+.......
T Consensus 85 ~~v~~Yd~~~~~W~~~~~~~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (346)
T TIGR03547 85 DDVYRYDPKKNSWQKLDTRSPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPED 163 (346)
T ss_pred ccEEEEECCCCEEecCCCCCCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhH
Confidence 578999999999999863 22221 112223 5799999987642100
Q ss_pred --CccEEEEEECCCceeeeeC-CCCCCCCCcceeeEEEECCeEEEEEecC---CCeEEEEEec-cCCCCcceeeEEEE
Q 018399 198 --PVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYGN---YGKLEIWVMK-DYNVKESWAKELNI 268 (356)
Q Consensus 198 --~~~~Il~fDl~~e~f~~i~-~P~~~~~~~~~~~l~~~~g~L~~~~~~~---~~~~~iW~L~-~~g~~~~W~~~~~I 268 (356)
....+.+||..+.+|..++ +|.... ....++.++|+|+++.... ....++|..+ +.+ +..|+..-.+
T Consensus 164 ~~~~~~v~~YDp~t~~W~~~~~~p~~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~-~~~W~~~~~m 237 (346)
T TIGR03547 164 YFWNKNVLSYDPSTNQWRNLGENPFLGT---AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGG-KLEWNKLPPL 237 (346)
T ss_pred cCccceEEEEECCCCceeECccCCCCcC---CCceEEEECCEEEEEeeeeCCCccchheEEEEecCC-CceeeecCCC
Confidence 0157999999999999984 443211 2345678899999986532 1234566654 222 4589876433
No 22
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.8e-05 Score=68.56 Aligned_cols=41 Identities=34% Similarity=0.496 Sum_probs=38.1
Q ss_pred CCCCCcHHHHHHHHccCCcccccceeecchhhhhhcCCHHH
Q 018399 24 GMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64 (356)
Q Consensus 24 ~~~~Lp~Dll~eIL~RLP~~sl~r~r~VcK~W~~li~~~~F 64 (356)
.+..||||++..||+.||-|+|++...|||+|+++.++...
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 47899999999999999999999999999999999988654
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.51 E-value=0.0027 Score=59.91 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=72.1
Q ss_pred ceEEEEEcCCCCceecCCC-CceeecCCCceE-EcceEEEEeccCCC---------------------------------
Q 018399 152 SDVQVYTVGSPAWRSKGKL-AYQFVRRPSEAL-VKGRLHWVTRPRRY--------------------------------- 196 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~~-p~~~~~~~~~v~-~~G~lywl~~~~~~--------------------------------- 196 (356)
..+++|+..+++|+.+... |.... ...++. .+|.||.+......
T Consensus 106 ~~v~~YD~~~n~W~~~~~~~p~~~~-~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 106 DDVYKYDPKTNSWQKLDTRSPVGLA-GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred ccEEEEeCCCCEEEeCCCCCCCccc-ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 5789999999999998742 22211 122333 79999999764210
Q ss_pred -CCccEEEEEECCCceeeeeC-CCCCCCCCcceeeEEEECCeEEEEEecC---CCeEEEEEeccCCCCcceeeEEEE
Q 018399 197 -SPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYGN---YGKLEIWVMKDYNVKESWAKELNI 268 (356)
Q Consensus 197 -~~~~~Il~fDl~~e~f~~i~-~P~~~~~~~~~~~l~~~~g~L~~~~~~~---~~~~~iW~L~~~g~~~~W~~~~~I 268 (356)
.....+.+||..+.+|..+. +|.... ....++..+++|+++.... ....++|..+-...+..|++...+
T Consensus 185 ~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~ 258 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL 258 (376)
T ss_pred cCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC
Confidence 01246999999999999875 443111 1335677899999886531 234677765421125689876544
No 24
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=97.36 E-value=0.011 Score=54.47 Aligned_cols=149 Identities=13% Similarity=0.183 Sum_probs=87.1
Q ss_pred eEEEEEcCC--CCceecCCCCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCCcee----eee-CCCCCCCCCc
Q 018399 153 DVQVYTVGS--PAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQF----REV-PKPDCGGLNR 225 (356)
Q Consensus 153 ~~~Vyss~t--~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f----~~i-~~P~~~~~~~ 225 (356)
.+.+|+..+ ..|..+..+|.... ...++.+++.||.+...........+..||+.+.+| ..+ ++|...
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~-~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~---- 114 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAA-YGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTF---- 114 (323)
T ss_pred eeEEEecCCCceeEEEcccCCcccc-ceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCc----
Confidence 444555322 27999887765432 234577899999998753323345789999999988 333 233322
Q ss_pred ceeeEEEECCeEEEEEecC--CCeEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEec
Q 018399 226 CNYHLTVLSGCLSVAVYGN--YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILE 303 (356)
Q Consensus 226 ~~~~l~~~~g~L~~~~~~~--~~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (356)
.....++++|+|+++.... ...-++|+++-. +.+|++.-.++.. . .....++..
T Consensus 115 ~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~-~---------------------r~~~~~~~~ 170 (323)
T TIGR03548 115 ENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLE--TQEWFELPDFPGE-P---------------------RVQPVCVKL 170 (323)
T ss_pred cCceEEEECCEEEEEeCcCCCccCceEEEEcCC--CCCeeECCCCCCC-C---------------------CCcceEEEE
Confidence 1235677899999886531 123367777643 5689875433210 0 001112222
Q ss_pred CCeEEEEEcC-----cEEEEEeCCCCcEEEEE
Q 018399 304 KGEILLEYKS-----RVLVSYDPKRRTFNEFV 330 (356)
Q Consensus 304 ~g~il~~~~~-----~~l~~Yd~~~~~~~~v~ 330 (356)
++.|++.-+. ..+..||+++++|+.+.
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 3455554221 23679999999999875
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.94 E-value=0.041 Score=51.20 Aligned_cols=90 Identities=10% Similarity=0.096 Sum_probs=59.2
Q ss_pred ceEEEEEc--CCCCceecCCCCceeecCCCceEEcceEEEEeccCCCC------CccEEEEEECCCceeeeeCCCCCCCC
Q 018399 152 SDVQVYTV--GSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYS------PVRGIVSFDIADEQFREVPKPDCGGL 223 (356)
Q Consensus 152 ~~~~Vyss--~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~------~~~~Il~fDl~~e~f~~i~~P~~~~~ 223 (356)
..+.+|++ .++.|+.+..+|.........+.++|.||-+....... ....+.+||+.+.+|..++.|.....
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~ 108 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGL 108 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcc
Confidence 45678886 56899999877743233345788999999998752111 12468899999999999863322111
Q ss_pred CcceeeEEEECCeEEEEEe
Q 018399 224 NRCNYHLTVLSGCLSVAVY 242 (356)
Q Consensus 224 ~~~~~~l~~~~g~L~~~~~ 242 (356)
.....++.++|+|+++..
T Consensus 109 -~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 109 -LGASGFSLHNGQAYFTGG 126 (346)
T ss_pred -cceeEEEEeCCEEEEEcC
Confidence 111223367999998854
No 26
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.91 E-value=0.052 Score=51.24 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=58.8
Q ss_pred ceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCCC---CCccEEEEEECCCceeeeeC-CCCCCCC--Cc
Q 018399 152 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRY---SPVRGIVSFDIADEQFREVP-KPDCGGL--NR 225 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~---~~~~~Il~fDl~~e~f~~i~-~P~~~~~--~~ 225 (356)
..+++|+..++.|+.++.+|.........+.+++.||.+...... ........||.++.+|..++ +|..... ..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 578999999999999887765333334567789999999864211 11223456677899998874 4543210 00
Q ss_pred --ceeeEEEECCeEEEEEe
Q 018399 226 --CNYHLTVLSGCLSVAVY 242 (356)
Q Consensus 226 --~~~~l~~~~g~L~~~~~ 242 (356)
.....+.++|+|+++..
T Consensus 269 ~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred ccceEeceeECCEEEEeec
Confidence 11224568899888864
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.99 E-value=0.0019 Score=57.84 Aligned_cols=42 Identities=31% Similarity=0.558 Sum_probs=38.8
Q ss_pred CCCCCCc----HHHHHHHHccCCcccccceeecchhhhhhcCCHHH
Q 018399 23 TGMETLP----REIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64 (356)
Q Consensus 23 ~~~~~Lp----~Dll~eIL~RLP~~sl~r~r~VcK~W~~li~~~~F 64 (356)
..+..|| +++.+.||+.|...+|..|..|||+|+++++++..
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 3667899 99999999999999999999999999999999865
No 28
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.94 E-value=0.05 Score=47.44 Aligned_cols=113 Identities=13% Similarity=0.161 Sum_probs=72.8
Q ss_pred CceEEEEEcCCCCceecC--CCCceeecCCCceEEcceEEEEeccCCC---------CCccEEEEEECCCceeeeeCC-C
Q 018399 151 RSDVQVYTVGSPAWRSKG--KLAYQFVRRPSEALVKGRLHWVTRPRRY---------SPVRGIVSFDIADEQFREVPK-P 218 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~--~~p~~~~~~~~~v~~~G~lywl~~~~~~---------~~~~~Il~fDl~~e~f~~i~~-P 218 (356)
...+++++..|-.||++. ..|........++..+|.+|-+....+. .-...|++||+.++.|..-+- |
T Consensus 156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~ 235 (392)
T KOG4693|consen 156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT 235 (392)
T ss_pred hccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC
Confidence 457889999999999875 3343333334566778999999875321 113579999999999976531 1
Q ss_pred CCCCCCcceeeEEEECCeEEEEEecC----CCeEEEEEeccCCCCcceeeEE
Q 018399 219 DCGGLNRCNYHLTVLSGCLSVAVYGN----YGKLEIWVMKDYNVKESWAKEL 266 (356)
Q Consensus 219 ~~~~~~~~~~~l~~~~g~L~~~~~~~----~~~~~iW~L~~~g~~~~W~~~~ 266 (356)
.... ....-...+++|+++++..-+ ...-++|..+.- ...|.+..
T Consensus 236 ~~P~-GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~ 284 (392)
T KOG4693|consen 236 MKPG-GRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVIS 284 (392)
T ss_pred cCCC-cccccceEEEcceEEEecccchhhhhhhcceeecccc--cchheeee
Confidence 1111 111224678999999885421 234578888753 56788754
No 29
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.88 E-value=0.0032 Score=55.99 Aligned_cols=45 Identities=33% Similarity=0.539 Sum_probs=39.7
Q ss_pred CCCCcHHHHHHHHccCCc-----ccccceeecchhhhhhcCCHHHHHHhh
Q 018399 25 METLPREIVLHILLRLPI-----TSLVQFKFVCRAWRALAQDPLLANLHN 69 (356)
Q Consensus 25 ~~~Lp~Dll~eIL~RLP~-----~sl~r~r~VcK~W~~li~~~~F~~~~~ 69 (356)
+..||||++.+||.+.=. ++|.++.+|||-|+-...+|.|-+..+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 478999999999998764 999999999999999999998866544
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.04 E-value=0.23 Score=43.43 Aligned_cols=158 Identities=12% Similarity=0.129 Sum_probs=89.7
Q ss_pred CceEEEEEcCCCCceecC--C-CCceeecCCCceEEcceEEEEeccCC--CCCccEEEEEECCCceeeeeCC---CCCCC
Q 018399 151 RSDVQVYTVGSPAWRSKG--K-LAYQFVRRPSEALVKGRLHWVTRPRR--YSPVRGIVSFDIADEQFREVPK---PDCGG 222 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~--~-~p~~~~~~~~~v~~~G~lywl~~~~~--~~~~~~Il~fDl~~e~f~~i~~---P~~~~ 222 (356)
+....-|+.+|++|+... . .|.. .....+..++..+|-+....+ ......+-++|+.+.+|+.+.- |+.
T Consensus 104 CN~Ly~fDp~t~~W~~p~v~G~vPga-RDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Ppr-- 180 (392)
T KOG4693|consen 104 CNLLYEFDPETNVWKKPEVEGFVPGA-RDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPR-- 180 (392)
T ss_pred cceeeeeccccccccccceeeecCCc-cCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCch--
Confidence 456678999999999764 2 2322 123445667888888775422 2345679999999999999853 431
Q ss_pred CCcceeeEEEECCeEEEEEecCC-----------CeEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccC
Q 018399 223 LNRCNYHLTVLSGCLSVAVYGNY-----------GKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSL 291 (356)
Q Consensus 223 ~~~~~~~l~~~~g~L~~~~~~~~-----------~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~ 291 (356)
..+++ .-.+++|.++++....+ -.-.|-.|+-. ++.|.....-.. .|.|-
T Consensus 181 wRDFH-~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~-~P~GR--------------- 241 (392)
T KOG4693|consen 181 WRDFH-TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTM-KPGGR--------------- 241 (392)
T ss_pred hhhhh-hhhhccceEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCCCc-CCCcc---------------
Confidence 11121 12345566666543210 12234444422 567876532221 12220
Q ss_pred CCceeEEEEEecCCeEEEEEc--------CcEEEEEeCCCCcEEEEEEeCC
Q 018399 292 NGRVVRVVCILEKGEILLEYK--------SRVLVSYDPKRRTFNEFVFKGT 334 (356)
Q Consensus 292 ~~~~~~~~~~~~~g~il~~~~--------~~~l~~Yd~~~~~~~~v~~~~~ 334 (356)
-.-..+.-||++.+.-+ -..++.+|+++..|..|...|.
T Consensus 242 ----RSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 242 ----RSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred ----cccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCC
Confidence 01122334566555421 2469999999999999987765
No 31
>PF13964 Kelch_6: Kelch motif
Probab=95.01 E-value=0.078 Score=33.94 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=31.9
Q ss_pred CCceEEcceEEEEeccCC-CCCccEEEEEECCCceeeeeC
Q 018399 178 PSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREVP 216 (356)
Q Consensus 178 ~~~v~~~G~lywl~~~~~-~~~~~~Il~fDl~~e~f~~i~ 216 (356)
...|.++|.||.+..... ......+..||+++.+|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 456889999999988743 344578999999999999985
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=93.65 E-value=3.1 Score=40.67 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCceecC---CCCceeecCCCceEEcceEEEEeccCC-CCCccEEEEEECCCceeeeeCCCCCCCCCccee
Q 018399 153 DVQVYTVGSPAWRSKG---KLAYQFVRRPSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREVPKPDCGGLNRCNY 228 (356)
Q Consensus 153 ~~~Vyss~t~~Wr~~~---~~p~~~~~~~~~v~~~G~lywl~~~~~-~~~~~~Il~fDl~~e~f~~i~~P~~~~~~~~~~ 228 (356)
.+.+++.++..|.... ..| ........+.++..||.+..... ......|-+||+.|.+|..+..-.........-
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~H 167 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGH 167 (482)
T ss_pred eeEEeecCCcccccccccCCCC-CcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccc
Confidence 4888999998998754 223 12234456778888998887632 222358999999999999885321100011122
Q ss_pred eEEEECCeEEEEEecC---CCeEEEEEeccCCCCcceeeEEEEcc
Q 018399 229 HLTVLSGCLSVAVYGN---YGKLEIWVMKDYNVKESWAKELNIGA 270 (356)
Q Consensus 229 ~l~~~~g~L~~~~~~~---~~~~~iW~L~~~g~~~~W~~~~~I~~ 270 (356)
.++..+.+|.+..... ...-++|+++-. ...|.+..+...
T Consensus 168 s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~--~~~W~~~~~~g~ 210 (482)
T KOG0379|consen 168 SATVVGTKLVVFGGIGGTGDSLNDLHIYDLE--TSTWSELDTQGE 210 (482)
T ss_pred eEEEECCEEEEECCccCcccceeeeeeeccc--cccceecccCCC
Confidence 3455556666664432 246799998753 456999877765
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=92.96 E-value=1.1 Score=43.90 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCCceecCCCC--ceeecCCCceEEcceEEEEeccCCCC-CccEEEEEECCCceeeeeCCCCCCCCCcce
Q 018399 151 RSDVQVYTVGSPAWRSKGKLA--YQFVRRPSEALVKGRLHWVTRPRRYS-PVRGIVSFDIADEQFREVPKPDCGGLNRCN 227 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p--~~~~~~~~~v~~~G~lywl~~~~~~~-~~~~Il~fDl~~e~f~~i~~P~~~~~~~~~ 227 (356)
...++.|+..|+.|+.+.... .........+.++-.+|......... ..+.+..||+++.+|..+............
T Consensus 138 ~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~g 217 (482)
T KOG0379|consen 138 LNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYG 217 (482)
T ss_pred hhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCC
Confidence 358899999999999876321 11223344566667777766542222 457899999999999998653321111122
Q ss_pred eeEEEECCeEEEEEecC---CCeEEEEEeccCCCCcceeeE
Q 018399 228 YHLTVLSGCLSVAVYGN---YGKLEIWVMKDYNVKESWAKE 265 (356)
Q Consensus 228 ~~l~~~~g~L~~~~~~~---~~~~~iW~L~~~g~~~~W~~~ 265 (356)
-.+++.+++++++.... ...=++|.|+=. ..+|.+.
T Consensus 218 H~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~--~~~W~~~ 256 (482)
T KOG0379|consen 218 HAMVVVGNKLLVFGGGDDGDVYLNDVHILDLS--TWEWKLL 256 (482)
T ss_pred ceEEEECCeEEEEeccccCCceecceEeeecc--cceeeec
Confidence 34677788888875432 234589998854 3567743
No 34
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=91.42 E-value=0.48 Score=29.57 Aligned_cols=39 Identities=13% Similarity=0.295 Sum_probs=31.6
Q ss_pred CCceEEcceEEEEeccCC-CCCccEEEEEECCCceeeeeC
Q 018399 178 PSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREVP 216 (356)
Q Consensus 178 ~~~v~~~G~lywl~~~~~-~~~~~~Il~fDl~~e~f~~i~ 216 (356)
...+.++|.||-+..... ......+..||+.+.+|..++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 356889999999997644 345578999999999999874
No 35
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=91.34 E-value=4.9 Score=37.69 Aligned_cols=113 Identities=9% Similarity=0.030 Sum_probs=67.4
Q ss_pred ceEEEEEcCCCCceecCCCCcee-ecCCCceEEc-ceEEEEeccCCCCC------ccEEEEEECCCceeeeeCCCCCCCC
Q 018399 152 SDVQVYTVGSPAWRSKGKLAYQF-VRRPSEALVK-GRLHWVTRPRRYSP------VRGIVSFDIADEQFREVPKPDCGGL 223 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~~p~~~-~~~~~~v~~~-G~lywl~~~~~~~~------~~~Il~fDl~~e~f~~i~~P~~~~~ 223 (356)
....+|+.+++.|+.+..+.... .....+|.+- |.+|-....-.+.. -..+..||+.+.+|..+.++.+.+.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 45679999999999986332111 1223444444 54444433211111 1248899999999999998765432
Q ss_pred CcceeeEEEECCeEEEEEecC---C---CeEEEEEeccCCCCcceeeEEE
Q 018399 224 NRCNYHLTVLSGCLSVAVYGN---Y---GKLEIWVMKDYNVKESWAKELN 267 (356)
Q Consensus 224 ~~~~~~l~~~~g~L~~~~~~~---~---~~~~iW~L~~~g~~~~W~~~~~ 267 (356)
. ..-+++.++.+|.++..-. . .--++|+.+-. ...|.++..
T Consensus 178 R-SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLd--tykW~Klep 224 (521)
T KOG1230|consen 178 R-SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLD--TYKWSKLEP 224 (521)
T ss_pred C-ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecc--ceeeeeccC
Confidence 2 1235778888887774321 1 12478886632 567998764
No 36
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=90.01 E-value=2.6 Score=33.03 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=50.5
Q ss_pred cEEEEEECCCc--eeeeeCCCCCCCC----------CcceeeEEEECCeEEEEEec---------CCCeEEEEEeccC-C
Q 018399 200 RGIVSFDIADE--QFREVPKPDCGGL----------NRCNYHLTVLSGCLSVAVYG---------NYGKLEIWVMKDY-N 257 (356)
Q Consensus 200 ~~Il~fDl~~e--~f~~i~~P~~~~~----------~~~~~~l~~~~g~L~~~~~~---------~~~~~~iW~L~~~-g 257 (356)
..|+..|+-.+ .++.|++|..... ......++..+|+|.++... ..-.+.+|.|... +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 46888888665 6788999863211 12234577788999887532 1347999999985 2
Q ss_pred CCcceeeEEEEccC
Q 018399 258 VKESWAKELNIGAY 271 (356)
Q Consensus 258 ~~~~W~~~~~I~~~ 271 (356)
....|.+-++++..
T Consensus 86 ~~~~W~~d~~v~~~ 99 (131)
T PF07762_consen 86 SSWEWKKDCEVDLS 99 (131)
T ss_pred CCCCEEEeEEEEhh
Confidence 36789999999874
No 37
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=89.96 E-value=1.1 Score=28.45 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=31.4
Q ss_pred CCceEEcceEEEEecc---CCCCCccEEEEEECCCceeeeeCCC
Q 018399 178 PSEALVKGRLHWVTRP---RRYSPVRGIVSFDIADEQFREVPKP 218 (356)
Q Consensus 178 ~~~v~~~G~lywl~~~---~~~~~~~~Il~fDl~~e~f~~i~~P 218 (356)
...+..+|.||.+... ........+..||+++.+|..++.+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 3467889999998876 2234457799999999999988643
No 38
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=88.27 E-value=11 Score=35.57 Aligned_cols=120 Identities=13% Similarity=0.237 Sum_probs=69.7
Q ss_pred cEEEEEECCCceeeeeCCCCCCCCCcceeeEEEECCeEEEEEec----C----CCeEEEEEeccCCCCcceeeEEEEccC
Q 018399 200 RGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYG----N----YGKLEIWVMKDYNVKESWAKELNIGAY 271 (356)
Q Consensus 200 ~~Il~fDl~~e~f~~i~~P~~~~~~~~~~~l~~~~g~L~~~~~~----~----~~~~~iW~L~~~g~~~~W~~~~~I~~~ 271 (356)
+.+.+||+.+.+|..+..|........+-.+++-.|.|.+.... + ..--++|++.-- +..|.++.-=.-.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~--trkweql~~~g~P 175 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLK--TRKWEQLEFGGGP 175 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeec--cchheeeccCCCC
Confidence 46889999999999986654322111223344445666666421 1 113489998753 4679886432221
Q ss_pred CCcCccccCCCcchhhcccCCCceeEEEEEec-CCeEEEEEcCcEEEEEeCCCCcEEEEEEeC
Q 018399 272 IPKGLKQSLDRPLKIWKNSLNGRVVRVVCILE-KGEILLEYKSRVLVSYDPKRRTFNEFVFKG 333 (356)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~il~~~~~~~l~~Yd~~~~~~~~v~~~~ 333 (356)
.+.. ...|..|++. .+..=||++ +++..+.+ .++++|+++-+|.++...|
T Consensus 176 S~RS-----GHRMvawK~~----lilFGGFhd~nr~y~YyN---Dvy~FdLdtykW~Klepsg 226 (521)
T KOG1230|consen 176 SPRS-----GHRMVAWKRQ----LILFGGFHDSNRDYIYYN---DVYAFDLDTYKWSKLEPSG 226 (521)
T ss_pred CCCc-----cceeEEeeee----EEEEcceecCCCceEEee---eeEEEeccceeeeeccCCC
Confidence 2221 2345566542 222334432 34555443 3899999999999998866
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=86.77 E-value=0.26 Score=46.01 Aligned_cols=43 Identities=28% Similarity=0.454 Sum_probs=37.8
Q ss_pred cCCCCCCCcHHHHHHHHccCCcccccceeecchhhhhhcCCHH
Q 018399 21 QATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPL 63 (356)
Q Consensus 21 ~~~~~~~Lp~Dll~eIL~RLP~~sl~r~r~VcK~W~~li~~~~ 63 (356)
.....-.||.+++..||+-|-.+++.|++.+|+.|+-+..|..
T Consensus 68 ~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~ 110 (483)
T KOG4341|consen 68 NNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS 110 (483)
T ss_pred cccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence 3445567999999999999999999999999999999988753
No 40
>PF13964 Kelch_6: Kelch motif
Probab=85.95 E-value=0.76 Score=29.20 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=19.2
Q ss_pred CceEEEEEcCCCCceecCCCCc
Q 018399 151 RSDVQVYTVGSPAWRSKGKLAY 172 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p~ 172 (356)
...+++|+.+|++|+.++.+|.
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCC
Confidence 4789999999999999987763
No 41
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=83.87 E-value=0.32 Score=47.98 Aligned_cols=47 Identities=34% Similarity=0.458 Sum_probs=42.2
Q ss_pred cCCCCCCCcHHHHHHHHccCCcccccceeecchhhhhhcCCHHHHHH
Q 018399 21 QATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANL 67 (356)
Q Consensus 21 ~~~~~~~Lp~Dll~eIL~RLP~~sl~r~r~VcK~W~~li~~~~F~~~ 67 (356)
+...+..||.++..-||..|++++|+++++||+.|+.++.+......
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 44578899999999999999999999999999999999998777653
No 42
>PLN02772 guanylate kinase
Probab=81.56 E-value=11 Score=35.63 Aligned_cols=76 Identities=11% Similarity=0.096 Sum_probs=52.3
Q ss_pred CCCceEEcceEEEEeccCCCC-CccEEEEEECCCceeeeeC----CCCCCCCCcceeeEEEECCeEEEEEecCCCeEEEE
Q 018399 177 RPSEALVKGRLHWVTRPRRYS-PVRGIVSFDIADEQFREVP----KPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIW 251 (356)
Q Consensus 177 ~~~~v~~~G~lywl~~~~~~~-~~~~Il~fDl~~e~f~~i~----~P~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~iW 251 (356)
...+|.+++.+|.+....+.. ....+..||..+.+|..-. .|... ..+...+.-+++|.++.-+....=+||
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r---~GhSa~v~~~~rilv~~~~~~~~~~~w 103 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC---KGYSAVVLNKDRILVIKKGSAPDDSIW 103 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC---CcceEEEECCceEEEEeCCCCCccceE
Confidence 356789999999998764433 4578999999999997753 23322 223444444688888875544446899
Q ss_pred Eecc
Q 018399 252 VMKD 255 (356)
Q Consensus 252 ~L~~ 255 (356)
.|+-
T Consensus 104 ~l~~ 107 (398)
T PLN02772 104 FLEV 107 (398)
T ss_pred EEEc
Confidence 9974
No 43
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.39 E-value=47 Score=29.24 Aligned_cols=172 Identities=17% Similarity=0.146 Sum_probs=86.9
Q ss_pred ceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCC----ceeeeeCCCCCCCCCcce
Q 018399 152 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIAD----EQFREVPKPDCGGLNRCN 227 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~----e~f~~i~~P~~~~~~~~~ 227 (356)
....+|+..|+++|.+.- ..........+.-||.+.-..... .....|-.|+..+ ..|... |.......-.
T Consensus 46 a~s~~yD~~tn~~rpl~v-~td~FCSgg~~L~dG~ll~tGG~~--~G~~~ir~~~p~~~~~~~~w~e~--~~~m~~~RWY 120 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTV-QTDTFCSGGAFLPDGRLLQTGGDN--DGNKAIRIFTPCTSDGTCDWTES--PNDMQSGRWY 120 (243)
T ss_pred EEEEEEecCCCcEEeccC-CCCCcccCcCCCCCCCEEEeCCCC--ccccceEEEecCCCCCCCCceEC--cccccCCCcc
Confidence 345689999999998752 222222234456678777554432 2335677788754 344332 2211111112
Q ss_pred eeEEEE-CCeEEEEEecCCCeEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCe
Q 018399 228 YHLTVL-SGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE 306 (356)
Q Consensus 228 ~~l~~~-~g~L~~~~~~~~~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 306 (356)
.....+ +|++.++........+.|=-+... ...+. +.. +.. .. .......+-.+.+..+|+
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~-~~~~~----~~~--l~~----~~-------~~~~~nlYP~~~llPdG~ 182 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPTYEFWPPKGPG-PGPVT----LPF--LSQ----TS-------DTLPNNLYPFVHLLPDGN 182 (243)
T ss_pred ccceECCCCCEEEEeCcCCCcccccCCccCC-CCcee----eec--chh----hh-------ccCccccCceEEEcCCCC
Confidence 233333 688777766654455555422111 11111 111 000 00 000112233455688999
Q ss_pred EEEEEcCcEEEEEeCCCCcE-EEEEEeCCCCeEEEEEeecCccc
Q 018399 307 ILLEYKSRVLVSYDPKRRTF-NEFVFKGTPNWFQTIVHQGSFNW 349 (356)
Q Consensus 307 il~~~~~~~l~~Yd~~~~~~-~~v~~~~~~~~~~~~~y~~Slv~ 349 (356)
|++....+ -..||.+++++ +.+ +..+...+..+...|-+-
T Consensus 183 lFi~an~~-s~i~d~~~n~v~~~l--P~lPg~~R~YP~sgssvm 223 (243)
T PF07250_consen 183 LFIFANRG-SIIYDYKTNTVVRTL--PDLPGGPRNYPASGSSVM 223 (243)
T ss_pred EEEEEcCC-cEEEeCCCCeEEeeC--CCCCCCceecCCCcceEE
Confidence 99887654 67789999976 443 333333556666666543
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=78.19 E-value=1.2 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=18.0
Q ss_pred CceEEEEEcCCCCceecCCCC
Q 018399 151 RSDVQVYTVGSPAWRSKGKLA 171 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p 171 (356)
...+++|+..++.|+.++.+|
T Consensus 27 ~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 27 TNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEEEETTTTEEEEEEEES
T ss_pred eeeEEEEeCCCCEEEEcCCCC
Confidence 478999999999999987654
No 45
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=77.76 E-value=48 Score=31.72 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=57.3
Q ss_pred ccEEEEEECCCceeeeeCCCCCCCCCcceeeEE-EE-CCeEEEEEecCCCeEEEEEeccCCCCcceeeEEEEccCCCcCc
Q 018399 199 VRGIVSFDIADEQFREVPKPDCGGLNRCNYHLT-VL-SGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGL 276 (356)
Q Consensus 199 ~~~Il~fDl~~e~f~~i~~P~~~~~~~~~~~l~-~~-~g~L~~~~~~~~~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~ 276 (356)
...+.+||+++.++..+..|...+. ..+... +. .+...++.. +.+.+.+-..+ +.+|.--++|.-
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~--~~~e~FeVShd~~fia~~G-~~G~I~lLhak----T~eli~s~KieG------ 345 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEE--KSMERFEVSHDSNFIAIAG-NNGHIHLLHAK----TKELITSFKIEG------ 345 (514)
T ss_pred ceEEEEeeccccccccccCCCCccc--chhheeEecCCCCeEEEcc-cCceEEeehhh----hhhhhheeeecc------
Confidence 4789999999999999998875442 111111 11 232222222 23444444333 345665555542
Q ss_pred cccCCCcchhhcccCCCceeEEEEEecCCeEEE-EEcCcEEEEEeCCCCcEEE
Q 018399 277 KQSLDRPLKIWKNSLNGRVVRVVCILEKGEILL-EYKSRVLVSYDPKRRTFNE 328 (356)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~-~~~~~~l~~Yd~~~~~~~~ 328 (356)
.+.-+++..+|+.|+ ....+.++.+|++++....
T Consensus 346 ------------------~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 346 ------------------VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred ------------------EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEE
Confidence 234455656665444 4557889999999987544
No 46
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=77.61 E-value=3.4 Score=25.91 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=21.5
Q ss_pred CceEE-cceEEEEeccCCC-CCccEEEEEECCCceeeeeC
Q 018399 179 SEALV-KGRLHWVTRPRRY-SPVRGIVSFDIADEQFREVP 216 (356)
Q Consensus 179 ~~v~~-~G~lywl~~~~~~-~~~~~Il~fDl~~e~f~~i~ 216 (356)
.++.+ ++.+|-+...... ..-..+..||+.+.+|..++
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~ 45 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLP 45 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECC
Confidence 34555 4777777654222 23357899999999999983
No 47
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=77.07 E-value=47 Score=28.58 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=24.2
Q ss_pred EEcceEEEEeccCCCCCccEEEEEECCCceeeeeCCCC
Q 018399 182 LVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPD 219 (356)
Q Consensus 182 ~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~~P~ 219 (356)
.+||.+ .+... ..++..|..|+++..+|.|.
T Consensus 3 sCnGLl-c~~~~------~~~~V~NP~T~~~~~LP~~~ 33 (230)
T TIGR01640 3 PCDGLI-CFSYG------KRLVVWNPSTGQSRWLPTPK 33 (230)
T ss_pred ccceEE-EEecC------CcEEEECCCCCCEEecCCCC
Confidence 478888 44432 57999999999999998765
No 48
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=76.50 E-value=60 Score=30.04 Aligned_cols=118 Identities=18% Similarity=0.228 Sum_probs=66.1
Q ss_pred CceEEc--ceEEEEeccCCCCCccEEEEEECCCceeeee---CCCC-C---CCCCcceeeEEEE---CCeEEEEEec---
Q 018399 179 SEALVK--GRLHWVTRPRRYSPVRGIVSFDIADEQFREV---PKPD-C---GGLNRCNYHLTVL---SGCLSVAVYG--- 243 (356)
Q Consensus 179 ~~v~~~--G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i---~~P~-~---~~~~~~~~~l~~~---~g~L~~~~~~--- 243 (356)
.+++.+ |.+||+++. +.|...|++.+.-... ++-. . .....+...+..+ .|+|+++.+.
T Consensus 188 ~~~~~~~~~~~~F~Sy~------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYE------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp --EEETTTTEEEEEBTT------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred ccceECCCCeEEEEecC------CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 445554 679999887 8999999988774333 2211 0 1111223445554 4788876542
Q ss_pred ---CCCeEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCe-EEEEE--cCcEEE
Q 018399 244 ---NYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE-ILLEY--KSRVLV 317 (356)
Q Consensus 244 ---~~~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-il~~~--~~~~l~ 317 (356)
+...-+||+++-.- =.++.+|++.. .+.-+++.++.+ .|+.. .++.++
T Consensus 262 gsHKdpgteVWv~D~~t----~krv~Ri~l~~----------------------~~~Si~Vsqd~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKT----HKRVARIPLEH----------------------PIDSIAVSQDDKPLLYALSAGDGTLD 315 (342)
T ss_dssp T-TTS-EEEEEEEETTT----TEEEEEEEEEE----------------------EESEEEEESSSS-EEEEEETTTTEEE
T ss_pred CCccCCceEEEEEECCC----CeEEEEEeCCC----------------------ccceEEEccCCCcEEEEEcCCCCeEE
Confidence 24577999987532 14556666521 122356666654 55533 356899
Q ss_pred EEeCCCCcEEE
Q 018399 318 SYDPKRRTFNE 328 (356)
Q Consensus 318 ~Yd~~~~~~~~ 328 (356)
.||..+++..+
T Consensus 316 v~D~~tGk~~~ 326 (342)
T PF06433_consen 316 VYDAATGKLVR 326 (342)
T ss_dssp EEETTT--EEE
T ss_pred EEeCcCCcEEe
Confidence 99999988644
No 49
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=74.59 E-value=73 Score=30.03 Aligned_cols=113 Identities=13% Similarity=0.198 Sum_probs=61.1
Q ss_pred CCceEEcceEEEEeccCCCCCccEEEEEECCCce--eeeeCCCCCCCC-C-----cceeeEEEECCeEEEEEecCCCeEE
Q 018399 178 PSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ--FREVPKPDCGGL-N-----RCNYHLTVLSGCLSVAVYGNYGKLE 249 (356)
Q Consensus 178 ~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~--f~~i~~P~~~~~-~-----~~~~~l~~~~g~L~~~~~~~~~~~~ 249 (356)
..++..+|.+|..... ..+.+||..+++ |+. .++..... . ......+..+|++++.... . .
T Consensus 63 ~sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~--g--~ 131 (394)
T PRK11138 63 LHPAVAYNKVYAADRA------GLVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK--G--Q 131 (394)
T ss_pred eccEEECCEEEEECCC------CeEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcCC--C--E
Confidence 3568899999998765 689999986554 432 22221000 0 0011244556666644322 2 3
Q ss_pred EEEecc-CCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEEEcCcEEEEEeCCCCcEEE
Q 018399 250 IWVMKD-YNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNE 328 (356)
Q Consensus 250 iW~L~~-~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~Yd~~~~~~~~ 328 (356)
+..++. .| +..|.....=.. .-.|+. .++.+++...++.++++|.++++..+
T Consensus 132 l~ald~~tG-~~~W~~~~~~~~------------------------~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 132 VYALNAEDG-EVAWQTKVAGEA------------------------LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred EEEEECCCC-CCcccccCCCce------------------------ecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 556653 34 677875421000 001111 13455555556778889988888665
No 50
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=73.48 E-value=2.9 Score=26.23 Aligned_cols=21 Identities=10% Similarity=0.438 Sum_probs=13.9
Q ss_pred CceEEEEEcCCCCceecCCCC
Q 018399 151 RSDVQVYTVGSPAWRSKGKLA 171 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p 171 (356)
...+++|+..+++|++++.+|
T Consensus 28 ~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 28 LNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp ---EEEEETTTTEEEE--SS-
T ss_pred cCCEEEEECCCCEEEECCCCC
Confidence 467889999999999997665
No 51
>smart00612 Kelch Kelch domain.
Probab=72.82 E-value=3.3 Score=25.23 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=18.9
Q ss_pred CceEEEEEcCCCCceecCCCCce
Q 018399 151 RSDVQVYTVGSPAWRSKGKLAYQ 173 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p~~ 173 (356)
...+++|+.+++.|+..+.++..
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~ 36 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTP 36 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCc
Confidence 36789999999999998876643
No 52
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=72.59 E-value=12 Score=20.97 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=19.2
Q ss_pred CCeEEEEEcCcEEEEEeCCCCcEEE
Q 018399 304 KGEILLEYKSRVLVSYDPKRRTFNE 328 (356)
Q Consensus 304 ~g~il~~~~~~~l~~Yd~~~~~~~~ 328 (356)
+|.+++...++.++++|.++++..+
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 4556666667899999999988765
No 53
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=72.28 E-value=61 Score=27.63 Aligned_cols=140 Identities=12% Similarity=0.070 Sum_probs=75.5
Q ss_pred ceEEEEEcCCC--CceecCCCCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCCceeee-eCCCCCCCCCccee
Q 018399 152 SDVQVYTVGSP--AWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFRE-VPKPDCGGLNRCNY 228 (356)
Q Consensus 152 ~~~~Vyss~t~--~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~-i~~P~~~~~~~~~~ 228 (356)
..+..++..+| .|+.--..+.. .....++..+|.+|-.... ..|.++|..+++-.. ..+|.... .
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~v~~~~~~------~~l~~~d~~tG~~~W~~~~~~~~~-----~ 70 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIG-GPVATAVPDGGRVYVASGD------GNLYALDAKTGKVLWRFDLPGPIS-----G 70 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCS-SEEETEEEETTEEEEEETT------SEEEEEETTTSEEEEEEECSSCGG-----S
T ss_pred CEEEEEECCCCCEEEEEECCCCCC-CccceEEEeCCEEEEEcCC------CEEEEEECCCCCEEEEeecccccc-----c
Confidence 45678888777 78873211100 0111234478888887544 799999986655322 33343211 1
Q ss_pred eEEEECCeEEEEEecCCCeEEEEEec-cCCCCcceee-EEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCe
Q 018399 229 HLTVLSGCLSVAVYGNYGKLEIWVMK-DYNVKESWAK-ELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE 306 (356)
Q Consensus 229 ~l~~~~g~L~~~~~~~~~~~~iW~L~-~~g~~~~W~~-~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 306 (356)
.....++.+++.... . .|+.++ ..| +..|.. ...-+.. . . .....+ .+. ++.
T Consensus 71 ~~~~~~~~v~v~~~~--~--~l~~~d~~tG-~~~W~~~~~~~~~~-~--~----------------~~~~~~-~~~-~~~ 124 (238)
T PF13360_consen 71 APVVDGGRVYVGTSD--G--SLYALDAKTG-KVLWSIYLTSSPPA-G--V----------------RSSSSP-AVD-GDR 124 (238)
T ss_dssp GEEEETTEEEEEETT--S--EEEEEETTTS-CEEEEEEE-SSCTC-S--T----------------B--SEE-EEE-TTE
T ss_pred eeeecccccccccce--e--eeEecccCCc-ceeeeecccccccc-c--c----------------ccccCc-eEe-cCE
Confidence 135666777665532 2 677776 445 677884 3221110 0 0 000111 111 344
Q ss_pred EEEEEcCcEEEEEeCCCCcEEEE
Q 018399 307 ILLEYKSRVLVSYDPKRRTFNEF 329 (356)
Q Consensus 307 il~~~~~~~l~~Yd~~~~~~~~v 329 (356)
+++...++.++.+|+++++..+-
T Consensus 125 ~~~~~~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 125 LYVGTSSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp EEEEETCSEEEEEETTTTEEEEE
T ss_pred EEEEeccCcEEEEecCCCcEEEE
Confidence 55555578899999999987553
No 54
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=70.70 E-value=11 Score=23.69 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=21.4
Q ss_pred ceEEEEeccC--CCCCccEEEEEECCCceeeeeC
Q 018399 185 GRLHWVTRPR--RYSPVRGIVSFDIADEQFREVP 216 (356)
Q Consensus 185 G~lywl~~~~--~~~~~~~Il~fDl~~e~f~~i~ 216 (356)
+.+|-..... .......+..||+.+.+|+.+.
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~ 35 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG 35 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECC
Confidence 4455555442 1223367899999999999983
No 55
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=67.87 E-value=1.1e+02 Score=28.66 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=75.2
Q ss_pred ceEEEEEcCCCCceec-CCCCceeecCCC-ceEEcceEEEEeccCCCCCccEEEEEECCCce--eeeeCCCCCCCCCcce
Q 018399 152 SDVQVYTVGSPAWRSK-GKLAYQFVRRPS-EALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ--FREVPKPDCGGLNRCN 227 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~-~~~p~~~~~~~~-~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~--f~~i~~P~~~~~~~~~ 227 (356)
..+.....++..|... ...... ..... +++.+|.+|..... +.|.+||.++.+ |+.-..+. .....
T Consensus 35 ~~~~~~~~g~~~W~~~~~~~~~~-~~~~~~~~~~dg~v~~~~~~------G~i~A~d~~~g~~~W~~~~~~~---~~~~~ 104 (370)
T COG1520 35 VAVANNTSGTLLWSVSLGSGGGG-IYAGPAPADGDGTVYVGTRD------GNIFALNPDTGLVKWSYPLLGA---VAQLS 104 (370)
T ss_pred eEEEcccCcceeeeeecccCccc-eEeccccEeeCCeEEEecCC------CcEEEEeCCCCcEEecccCcCc---ceecc
Confidence 3444555666788643 111111 11122 58999999998655 589999998777 65443320 00011
Q ss_pred eeEEEECCeEEEEEecCCCeEEEEEecc-CCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCe
Q 018399 228 YHLTVLSGCLSVAVYGNYGKLEIWVMKD-YNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE 306 (356)
Q Consensus 228 ~~l~~~~g~L~~~~~~~~~~~~iW~L~~-~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 306 (356)
.-...-+|++.+-.... .++.|+. .| +..|....... +. ...+ .+..++.
T Consensus 105 ~~~~~~~G~i~~g~~~g----~~y~ld~~~G-~~~W~~~~~~~---~~--------------------~~~~-~v~~~~~ 155 (370)
T COG1520 105 GPILGSDGKIYVGSWDG----KLYALDASTG-TLVWSRNVGGS---PY--------------------YASP-PVVGDGT 155 (370)
T ss_pred CceEEeCCeEEEecccc----eEEEEECCCC-cEEEEEecCCC---eE--------------------EecC-cEEcCcE
Confidence 11222267755443331 7888887 45 67777653220 00 0001 1223344
Q ss_pred EEEEEcCcEEEEEeCCCCcEEEE
Q 018399 307 ILLEYKSRVLVSYDPKRRTFNEF 329 (356)
Q Consensus 307 il~~~~~~~l~~Yd~~~~~~~~v 329 (356)
+++...++.+++.|.++++.++-
T Consensus 156 v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 156 VYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred EEEecCCCeEEEEEccCCcEEEE
Confidence 44444567788888888877654
No 56
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=66.54 E-value=5.9 Score=24.91 Aligned_cols=21 Identities=19% Similarity=0.468 Sum_probs=17.6
Q ss_pred CceEEEEEcCCCCceecCCCC
Q 018399 151 RSDVQVYTVGSPAWRSKGKLA 171 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~~p 171 (356)
...+++|+.++++|+.+..+|
T Consensus 29 ~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 29 SNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred cceeEEEECCCCEEeecCCCC
Confidence 467899999999999987543
No 57
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=64.68 E-value=12 Score=22.35 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=19.0
Q ss_pred CCceEEcceEEEEeccCCCCCccEEEEEECCC
Q 018399 178 PSEALVKGRLHWVTRPRRYSPVRGIVSFDIAD 209 (356)
Q Consensus 178 ~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~ 209 (356)
..++..+|.+|....+ +.+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~d------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC------CEEEEEeCCC
Confidence 4457889999998876 7999999875
No 58
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=63.48 E-value=1.6e+02 Score=29.22 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=42.3
Q ss_pred CCceEEcceEEEEeccCCCCCccEEEEEECCCce--eeee-CCCCCCCC----CcceeeEEEECCeEEEEEecCCCeEEE
Q 018399 178 PSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ--FREV-PKPDCGGL----NRCNYHLTVLSGCLSVAVYGNYGKLEI 250 (356)
Q Consensus 178 ~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~--f~~i-~~P~~~~~----~~~~~~l~~~~g~L~~~~~~~~~~~~i 250 (356)
..++.++|.+|..... ..|.++|..+++ |+.- ..|..... ......++..+|++.+.... . .|
T Consensus 63 stPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d--g--~l 132 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD--A--RL 132 (527)
T ss_pred cCCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC--C--EE
Confidence 5678899999997654 579999987654 5442 23321100 00011234455665543322 1 46
Q ss_pred EEeccCCCCcceeeE
Q 018399 251 WVMKDYNVKESWAKE 265 (356)
Q Consensus 251 W~L~~~g~~~~W~~~ 265 (356)
..|+....+..|...
T Consensus 133 ~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 133 VALDAKTGKVVWSKK 147 (527)
T ss_pred EEEECCCCCEEeecc
Confidence 666653226667653
No 59
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=63.30 E-value=1.7e+02 Score=30.54 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=24.8
Q ss_pred CCCceEEcceEEEEeccCCCCCccEEEEEECCCc--eeee
Q 018399 177 RPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADE--QFRE 214 (356)
Q Consensus 177 ~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e--~f~~ 214 (356)
...++.++|.+|.-+.. +.|+++|..|+ .|+.
T Consensus 187 e~TPlvvgg~lYv~t~~------~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPH------NKVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCC------CeEEEEECCCCcEEEEE
Confidence 46789999999998765 68999998654 4554
No 60
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=60.18 E-value=20 Score=21.15 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=18.3
Q ss_pred eEEEEEcCcEEEEEeCCCCcEEEE
Q 018399 306 EILLEYKSRVLVSYDPKRRTFNEF 329 (356)
Q Consensus 306 ~il~~~~~~~l~~Yd~~~~~~~~v 329 (356)
.|++...++.++++|.+|++..+-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEe
Confidence 344555568899999999998774
No 61
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=56.81 E-value=1.6e+02 Score=26.84 Aligned_cols=146 Identities=8% Similarity=0.057 Sum_probs=68.4
Q ss_pred ceEEEEEcC-CCCceecCCCCceeecCCCceEE--cceEEEEeccCCCCCccEEEEEECCCc-ee-eeeC-CCCCCCCCc
Q 018399 152 SDVQVYTVG-SPAWRSKGKLAYQFVRRPSEALV--KGRLHWVTRPRRYSPVRGIVSFDIADE-QF-REVP-KPDCGGLNR 225 (356)
Q Consensus 152 ~~~~Vyss~-t~~Wr~~~~~p~~~~~~~~~v~~--~G~lywl~~~~~~~~~~~Il~fDl~~e-~f-~~i~-~P~~~~~~~ 225 (356)
..+.+|+.. ++++..+...+.. .....+.+ +|...+.+.. ..+.|.+||+.+. .. ..+. +|.. ..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~--~~p~~i~~~~~g~~l~v~~~----~~~~v~v~~~~~~g~~~~~~~~~~~~---~~ 127 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLP--GSPTHISTDHQGRFLFSASY----NANCVSVSPLDKDGIPVAPIQIIEGL---EG 127 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCC--CCceEEEECCCCCEEEEEEc----CCCeEEEEEECCCCCCCCceeeccCC---Cc
Confidence 456677775 4566654422211 01112222 3554444432 1367888988632 11 1111 1110 01
Q ss_pred ceeeEEEECCeEEEEEecCCCeEEEEEeccCCCCcceeeE--EEEccCCCcCccccCCCcchhhcccCCCceeEEEEEec
Q 018399 226 CNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKE--LNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILE 303 (356)
Q Consensus 226 ~~~~l~~~~g~L~~~~~~~~~~~~iW~L~~~g~~~~W~~~--~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (356)
.+.....-+|+..++.......+.+|-++..+ .-... ..+.. +.+ ...+-+.+..
T Consensus 128 ~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g---~l~~~~~~~~~~--~~g------------------~~p~~~~~~p 184 (330)
T PRK11028 128 CHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG---HLVAQEPAEVTT--VEG------------------AGPRHMVFHP 184 (330)
T ss_pred ccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC---cccccCCCceec--CCC------------------CCCceEEECC
Confidence 11112233565555555446788999887532 11110 11111 001 1122356677
Q ss_pred CCeEEEEEc--CcEEEEEeCC--CCcEEEE
Q 018399 304 KGEILLEYK--SRVLVSYDPK--RRTFNEF 329 (356)
Q Consensus 304 ~g~il~~~~--~~~l~~Yd~~--~~~~~~v 329 (356)
+|..++... .+.+..||++ +++++.+
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 887766543 5778888886 4455443
No 62
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=54.17 E-value=24 Score=31.51 Aligned_cols=63 Identities=17% Similarity=0.299 Sum_probs=39.4
Q ss_pred ceEEEEEcCCCCceecCCCCceeecCCCceEEcce-EEEEeccCCCCCccEEEEEECCCceeeeeCCCCC
Q 018399 152 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGR-LHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDC 220 (356)
Q Consensus 152 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~-lywl~~~~~~~~~~~Il~fDl~~e~f~~i~~P~~ 220 (356)
..++-|+..+.+|.+-.- |..- ....+++++.. .-|+..- ..+.|..||.++++|.++++|..
T Consensus 254 g~l~rfdPs~~sW~eypL-Pgs~-arpys~rVD~~grVW~sea----~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 254 GSLHRFDPSVTSWIEYPL-PGSK-ARPYSMRVDRHGRVWLSEA----DAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred ceeeEeCcccccceeeeC-CCCC-CCcceeeeccCCcEEeecc----ccCceeecCcccceEEEecCCCC
Confidence 356667777778877532 2110 11233444422 3466443 35899999999999999999864
No 63
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=53.90 E-value=31 Score=25.08 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=14.8
Q ss_pred CcEEEEEeCCCCcEEEEE
Q 018399 313 SRVLVSYDPKRRTFNEFV 330 (356)
Q Consensus 313 ~~~l~~Yd~~~~~~~~v~ 330 (356)
.++++.||++|++.+.+-
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 478999999999987753
No 64
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=53.65 E-value=89 Score=29.04 Aligned_cols=86 Identities=14% Similarity=0.210 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCCcee-----------eeeCCCCCC
Q 018399 153 DVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQF-----------REVPKPDCG 221 (356)
Q Consensus 153 ~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f-----------~~i~~P~~~ 221 (356)
....|+-++.+|+..++. .+.+..++.|+..-=-|+........ +.|.+.|+.+..- ..+..|..
T Consensus 200 GTysfDt~~~~W~~~GdW--~LPF~G~a~y~~el~~W~Gls~~~~~-~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~~- 275 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDW--MLPFHGQAEYVPELDLWFGLSSDGGG-GHLCACDVSSADSASPPPEWKLTWEELFPPEE- 275 (342)
T ss_pred EEEEEEcCCcceeeccce--ecCcCCccEECCCcCeEEEeccCCCC-cEEEEEeccccccCCCCCcceecccccccccc-
Confidence 466777788899999742 11234567777777778876632222 6899999977432 22222321
Q ss_pred CCCcceeeEEEEC-CeEEEEEec
Q 018399 222 GLNRCNYHLTVLS-GCLSVAVYG 243 (356)
Q Consensus 222 ~~~~~~~~l~~~~-g~L~~~~~~ 243 (356)
.......|+.++ |+.|++...
T Consensus 276 -~~~~~~~Lv~lG~grFCi~~~~ 297 (342)
T PF07893_consen 276 -WRHVGATLVYLGSGRFCIVEFF 297 (342)
T ss_pred -ccccCceEEECCCCCEEEEEEe
Confidence 112245666664 678888654
No 65
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=53.52 E-value=42 Score=25.99 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=27.0
Q ss_pred CcEEEEEeCCCCcEEEEEEe--C--CCCeEEEEEeecCcccCC
Q 018399 313 SRVLVSYDPKRRTFNEFVFK--G--TPNWFQTIVHQGSFNWID 351 (356)
Q Consensus 313 ~~~l~~Yd~~~~~~~~v~~~--~--~~~~~~~~~y~~Slv~~~ 351 (356)
...++++|+++++++.+..+ . .........|.+.|..+.
T Consensus 19 ~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~ 61 (129)
T PF08268_consen 19 NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVS 61 (129)
T ss_pred CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEE
Confidence 46799999999999999885 1 122334557777775543
No 66
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=52.57 E-value=1.9e+02 Score=26.72 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=68.4
Q ss_pred ccEEEEEECCCceeeee---CCCCCCCCCcceeeE-EEECCeEEEEEecCCCeEEEEEeccCCCCcceeeEEEEccCCCc
Q 018399 199 VRGIVSFDIADEQFREV---PKPDCGGLNRCNYHL-TVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPK 274 (356)
Q Consensus 199 ~~~Il~fDl~~e~f~~i---~~P~~~~~~~~~~~l-~~~~g~L~~~~~~~~~~~~iW~L~~~g~~~~W~~~~~I~~~~~~ 274 (356)
...|..||++.+.+... .+++.. +..++ .--+|+++++...-..++++|..+.. .++-..+.+|.. +|.
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~----GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~t-lP~ 238 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGA----GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDT-LPE 238 (346)
T ss_pred CceEEEEEcccCccccccccccCCCC----CcceEEEcCCCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeecc-Ccc
Confidence 35566666665544332 223221 12233 23468888776654678999998875 356777777765 343
Q ss_pred CccccCCCcchhhcccCCCceeEEEEEecCCeEEEEEcCc----EEEEEeCCCCcEEEEEEe
Q 018399 275 GLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSR----VLVSYDPKRRTFNEFVFK 332 (356)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~----~l~~Yd~~~~~~~~v~~~ 332 (356)
++. ......-+.+..+|..|+..+.+ .++.-|..+++++-+...
T Consensus 239 dF~--------------g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 239 DFT--------------GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred ccC--------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 321 22345667788899988875532 356667778888777764
No 67
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=51.84 E-value=10 Score=34.76 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=33.3
Q ss_pred CCCCCCcHHHHHHHHccCCc--------ccccceeecchhhhhhcCC
Q 018399 23 TGMETLPREIVLHILLRLPI--------TSLVQFKFVCRAWRALAQD 61 (356)
Q Consensus 23 ~~~~~Lp~Dll~eIL~RLP~--------~sl~r~r~VcK~W~~li~~ 61 (356)
..++.||.+++.+|+.|..- ++..-+..||+.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 46779999999999999872 3678899999999998765
No 68
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=50.34 E-value=1.6e+02 Score=24.99 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=30.5
Q ss_pred eEEEEEcCCC--Cce-ecCCCCce-eecCCCceEEcceEEEEeccCCCCCccEEEEEECCCcee
Q 018399 153 DVQVYTVGSP--AWR-SKGKLAYQ-FVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQF 212 (356)
Q Consensus 153 ~~~Vyss~t~--~Wr-~~~~~p~~-~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f 212 (356)
.+..++..+| .|+ .....+.. ..........++.+|..... ..|.++|+.+++-
T Consensus 87 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 87 SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS------GKLVALDPKTGKL 144 (238)
T ss_dssp EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC------SEEEEEETTTTEE
T ss_pred eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc------CcEEEEecCCCcE
Confidence 5667776776 898 44322211 11222233335666666544 7999999887664
No 69
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=49.12 E-value=2.3e+02 Score=26.60 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=58.7
Q ss_pred CCceEEcceEEEEeccCCCCCccEEEEEECCCce--eeeeCCCCCCCCCcceeeEEEECCeEEEEEecCCCeEEEEEecc
Q 018399 178 PSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ--FREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKD 255 (356)
Q Consensus 178 ~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~--f~~i~~P~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~iW~L~~ 255 (356)
..++..+|.+|..... ..+.++|..+++ |+. +.+.. ..++..+|.+++.... . .+..++-
T Consensus 250 ~sP~v~~~~vy~~~~~------g~l~ald~~tG~~~W~~-~~~~~-------~~~~~~~~~vy~~~~~--g--~l~ald~ 311 (394)
T PRK11138 250 TTPVVVGGVVYALAYN------GNLVALDLRSGQIVWKR-EYGSV-------NDFAVDGGRIYLVDQN--D--RVYALDT 311 (394)
T ss_pred CCcEEECCEEEEEEcC------CeEEEEECCCCCEEEee-cCCCc-------cCcEEECCEEEEEcCC--C--eEEEEEC
Confidence 5677889999987755 689999997654 543 12110 1234455666655432 2 2333332
Q ss_pred CCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEEEcCcEEEEEeCCCCcEEE
Q 018399 256 YNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNE 328 (356)
Q Consensus 256 ~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~Yd~~~~~~~~ 328 (356)
...+..|.... ..-. ....|+. .+|.|++...++.+++.|.++++...
T Consensus 312 ~tG~~~W~~~~-~~~~----------------------~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 312 RGGVELWSQSD-LLHR----------------------LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CCCcEEEcccc-cCCC----------------------cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 22244564311 0000 0011221 24567666677889999999888654
No 70
>PF13013 F-box-like_2: F-box-like domain
Probab=46.78 E-value=9.7 Score=28.90 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=24.3
Q ss_pred CCCCCcHHHHHHHHccCCcccccceeecch
Q 018399 24 GMETLPREIVLHILLRLPITSLVQFKFVCR 53 (356)
Q Consensus 24 ~~~~Lp~Dll~eIL~RLP~~sl~r~r~VcK 53 (356)
...+||+||+..|+..-....+...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 477899999999999999888766555555
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=46.52 E-value=2.5e+02 Score=26.12 Aligned_cols=54 Identities=9% Similarity=0.175 Sum_probs=32.7
Q ss_pred eEEEEEcCCC--CceecCCCCce------e-ecCCCceEEcceEEEEeccCCCCCccEEEEEECCCcee
Q 018399 153 DVQVYTVGSP--AWRSKGKLAYQ------F-VRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQF 212 (356)
Q Consensus 153 ~~~Vyss~t~--~Wr~~~~~p~~------~-~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f 212 (356)
.+..++.++| .|+.-...+.. . .....++..+|.+|..... +.+.++|..+.+.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~ 263 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRV 263 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcE
Confidence 4555666665 67643211110 0 1224567789999987765 6899999976653
No 72
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=46.02 E-value=2.5e+02 Score=26.07 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=21.3
Q ss_pred CCceEEcceEEEEeccCCCCCccEEEEEECCCce
Q 018399 178 PSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ 211 (356)
Q Consensus 178 ~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~ 211 (356)
..++..+|.+|..... +.|.+||..+++
T Consensus 59 ~~p~v~~~~v~v~~~~------g~v~a~d~~tG~ 86 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------GTVVALDAETGK 86 (377)
T ss_pred cceEEECCEEEEECCC------CeEEEEEccCCc
Confidence 3567789999987655 689999986555
No 73
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=44.46 E-value=86 Score=28.27 Aligned_cols=62 Identities=13% Similarity=0.335 Sum_probs=45.1
Q ss_pred CceEEEEEcCCCCceecCC-CCce---ee-cCCCceEEcceEEEEeccCCCCCccEEEEEECCCceeeeeCC
Q 018399 151 RSDVQVYTVGSPAWRSKGK-LAYQ---FV-RRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPK 217 (356)
Q Consensus 151 ~~~~~Vyss~t~~Wr~~~~-~p~~---~~-~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~~ 217 (356)
+..+++|+..+.+|..... +... +. ....-+++.|.+-.-.. ....+..||+.+.+|..+.-
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~-----~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGT-----NSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCC-----CceeEEEEecCCCeeeecCC
Confidence 6789999999999998863 2221 11 34567788887765431 24789999999999988764
No 74
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=43.67 E-value=2.1e+02 Score=24.62 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=61.1
Q ss_pred cceEEEEeccCCCCCccEEEEEECCCceeeeeCCCCCCCCCcceeeEEE--ECCeEEEEEecCCCeEEEEEeccCCCCcc
Q 018399 184 KGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTV--LSGCLSVAVYGNYGKLEIWVMKDYNVKES 261 (356)
Q Consensus 184 ~G~lywl~~~~~~~~~~~Il~fDl~~e~f~~i~~P~~~~~~~~~~~l~~--~~g~L~~~~~~~~~~~~iW~L~~~g~~~~ 261 (356)
+|.|||.-.. ...|..+|..+++...+..|.. .-++. -+|.|.+.... .+ .++ +.. .++
T Consensus 11 ~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~~~~-------~G~~~~~~~g~l~v~~~~---~~--~~~-d~~-~g~ 71 (246)
T PF08450_consen 11 DGRLYWVDIP-----GGRIYRVDPDTGEVEVIDLPGP-------NGMAFDRPDGRLYVADSG---GI--AVV-DPD-TGK 71 (246)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEESSSE-------EEEEEECTTSEEEEEETT---CE--EEE-ETT-TTE
T ss_pred CCEEEEEEcC-----CCEEEEEECCCCeEEEEecCCC-------ceEEEEccCCEEEEEEcC---ce--EEE-ecC-CCc
Confidence 6999999654 4789999999999988887761 12222 24666555432 12 222 332 456
Q ss_pred eeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEEEcC---------cEEEEEeCCCCcEEEE
Q 018399 262 WAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKS---------RVLVSYDPKRRTFNEF 329 (356)
Q Consensus 262 W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~---------~~l~~Yd~~~~~~~~v 329 (356)
+........... ......-+++..+|.+++.... +.++.++++ ++.+.+
T Consensus 72 ~~~~~~~~~~~~------------------~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 72 VTVLADLPDGGV------------------PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEEEEEETTCS------------------CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEEEeeccCCCc------------------ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 666665521100 0122334666777777775321 457778877 555554
No 75
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=39.61 E-value=14 Score=32.68 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=29.8
Q ss_pred cCCCCCCCcHHHHHHHHccCC-cccccceeecchhhhhhcCC
Q 018399 21 QATGMETLPREIVLHILLRLP-ITSLVQFKFVCRAWRALAQD 61 (356)
Q Consensus 21 ~~~~~~~Lp~Dll~eIL~RLP-~~sl~r~r~VcK~W~~li~~ 61 (356)
++-...+||.+++.+||.||| -.+|.-...|--.-..++++
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 455778999999999999999 67777666664443444443
No 76
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=37.70 E-value=4.9e+02 Score=27.03 Aligned_cols=77 Identities=12% Similarity=0.200 Sum_probs=46.8
Q ss_pred CceEEcceEEEEeccCC------CCCccEEEEEECCCceeeeeCCCCCCC-----CCcceeeEEEEC--CeEEEEEecCC
Q 018399 179 SEALVKGRLHWVTRPRR------YSPVRGIVSFDIADEQFREVPKPDCGG-----LNRCNYHLTVLS--GCLSVAVYGNY 245 (356)
Q Consensus 179 ~~v~~~G~lywl~~~~~------~~~~~~Il~fDl~~e~f~~i~~P~~~~-----~~~~~~~l~~~~--g~L~~~~~~~~ 245 (356)
+.++..+.-||+..... -..+..+++.++.++.|....+|.... ..+....-+.++ |.=..+...+.
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~kl 329 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKL 329 (893)
T ss_pred ceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCcc
Confidence 44777788888875421 123467999999999999999998532 111222223333 43333333335
Q ss_pred CeEEEEEecc
Q 018399 246 GKLEIWVMKD 255 (356)
Q Consensus 246 ~~~~iW~L~~ 255 (356)
..+-||.++.
T Consensus 330 gQLlVweWqs 339 (893)
T KOG0291|consen 330 GQLLVWEWQS 339 (893)
T ss_pred ceEEEEEeec
Confidence 6788888774
No 77
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=35.38 E-value=4.1e+02 Score=26.26 Aligned_cols=65 Identities=6% Similarity=0.081 Sum_probs=41.5
Q ss_pred eEEEEEcCCCCceecC--CCCceeecCCCceEEcceEEEEecc----CC----------CCCccEEEEEECCCceeeeeC
Q 018399 153 DVQVYTVGSPAWRSKG--KLAYQFVRRPSEALVKGRLHWVTRP----RR----------YSPVRGIVSFDIADEQFREVP 216 (356)
Q Consensus 153 ~~~Vyss~t~~Wr~~~--~~p~~~~~~~~~v~~~G~lywl~~~----~~----------~~~~~~Il~fDl~~e~f~~i~ 216 (356)
...-.+++|-.|.+.. ..+........++.++..+|.+..- .+ ......+-+.|+.+..|..+.
T Consensus 231 DLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~ 310 (830)
T KOG4152|consen 231 DLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL 310 (830)
T ss_pred ceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeee
Confidence 3456788889998764 3333333345567788888855421 10 122356888999999999886
Q ss_pred C
Q 018399 217 K 217 (356)
Q Consensus 217 ~ 217 (356)
+
T Consensus 311 ~ 311 (830)
T KOG4152|consen 311 M 311 (830)
T ss_pred e
Confidence 5
No 78
>PF15408 PH_7: Pleckstrin homology domain
Probab=35.35 E-value=12 Score=26.74 Aligned_cols=32 Identities=22% Similarity=0.509 Sum_probs=24.7
Q ss_pred HHHccCC----cccccceeecchhhhhhcCCHHHHH
Q 018399 35 HILLRLP----ITSLVQFKFVCRAWRALAQDPLLAN 66 (356)
Q Consensus 35 eIL~RLP----~~sl~r~r~VcK~W~~li~~~~F~~ 66 (356)
-||..=| ++.++-.+-|||+|.....+|+|.-
T Consensus 65 G~L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 65 GFLMYSPSRRHVQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred EEEEecCCcchhhhhhhHHHHHHHHHHHhcChhhhh
Confidence 4555555 4667777889999999999999853
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=34.43 E-value=4.3e+02 Score=25.42 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEeccCCCCCccEEEEEEC-CCceeeeeCCCCCCCCCccee
Q 018399 150 PRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDI-ADEQFREVPKPDCGGLNRCNY 228 (356)
Q Consensus 150 ~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl-~~e~f~~i~~P~~~~~~~~~~ 228 (356)
....+.||++.+.. .+...|. ....-..+.+..+=||++.. .....|..+|+ ..+.|..+++|...+. ..
T Consensus 367 ~d~~vkiwdlks~~--~~a~Fpg-ht~~vk~i~FsENGY~Lat~---add~~V~lwDLRKl~n~kt~~l~~~~~v---~s 437 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQT--NVAKFPG-HTGPVKAISFSENGYWLATA---ADDGSVKLWDLRKLKNFKTIQLDEKKEV---NS 437 (506)
T ss_pred CCceEEEEEcCCcc--ccccCCC-CCCceeEEEeccCceEEEEE---ecCCeEEEEEehhhcccceeeccccccc---ee
Q ss_pred eEEEECCeEEEEEecCCCeEEEEEeccCCCCcceeeE
Q 018399 229 HLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKE 265 (356)
Q Consensus 229 ~l~~~~g~L~~~~~~~~~~~~iW~L~~~g~~~~W~~~ 265 (356)
--....|....+. ...+.|...+.. +.+|.+.
T Consensus 438 ~~fD~SGt~L~~~---g~~l~Vy~~~k~--~k~W~~~ 469 (506)
T KOG0289|consen 438 LSFDQSGTYLGIA---GSDLQVYICKKK--TKSWTEI 469 (506)
T ss_pred EEEcCCCCeEEee---cceeEEEEEecc--cccceee
No 80
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=33.42 E-value=4.2e+02 Score=24.98 Aligned_cols=147 Identities=16% Similarity=0.104 Sum_probs=71.9
Q ss_pred ceEEEEEcCCC-----CceecCC-CCceeecCCCceEEcceEEEEeccCCCCCccEEEEEECCCce---eeeeCCCCCCC
Q 018399 152 SDVQVYTVGSP-----AWRSKGK-LAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ---FREVPKPDCGG 222 (356)
Q Consensus 152 ~~~~Vyss~t~-----~Wr~~~~-~p~~~~~~~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~---f~~i~~P~~~~ 222 (356)
..+.+.+..++ .|+.+.. .+... ...-..++.+|.++.. ....+.|++.|+.+-. |..+-+|....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~---~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVE---YYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-E---EEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceE---EEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEcCCCCc
Confidence 45566666654 6666531 11100 0112347788887753 3445789999998766 55433333211
Q ss_pred CCcceeeEEEECCeEEEEEecCCCeEEEEEeccCCCCcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEE-
Q 018399 223 LNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCI- 301 (356)
Q Consensus 223 ~~~~~~~l~~~~g~L~~~~~~~~~~~~iW~L~~~g~~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 301 (356)
..-..+...++.|.+.... ...-.|.++.-. ..|.... +.+.. .+ .+..+..
T Consensus 327 --~~l~~~~~~~~~Lvl~~~~-~~~~~l~v~~~~---~~~~~~~-~~~p~-~g-------------------~v~~~~~~ 379 (414)
T PF02897_consen 327 --VSLEDVSLFKDYLVLSYRE-NGSSRLRVYDLD---DGKESRE-IPLPE-AG-------------------SVSGVSGD 379 (414)
T ss_dssp --EEEEEEEEETTEEEEEEEE-TTEEEEEEEETT----TEEEEE-EESSS-SS-------------------EEEEEES-
T ss_pred --eeEEEEEEECCEEEEEEEE-CCccEEEEEECC---CCcEEee-ecCCc-ce-------------------EEeccCCC
Confidence 1122344567777766544 233344444431 1344332 33210 00 1111111
Q ss_pred ecCCeEEEEEc----CcEEEEEeCCCCcEEEEE
Q 018399 302 LEKGEILLEYK----SRVLVSYDPKRRTFNEFV 330 (356)
Q Consensus 302 ~~~g~il~~~~----~~~l~~Yd~~~~~~~~v~ 330 (356)
....++.|... ...++.||+++++.+.+.
T Consensus 380 ~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 380 FDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 22345666543 468999999999988764
No 81
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=32.61 E-value=5.3e+02 Score=26.89 Aligned_cols=97 Identities=16% Similarity=0.364 Sum_probs=56.4
Q ss_pred EEEEECCCceee---eeCCCCCCCCCcceeeEEEEC--CeEEEEEecCCCeEEEEEeccCC----CCcceeeEEEEccCC
Q 018399 202 IVSFDIADEQFR---EVPKPDCGGLNRCNYHLTVLS--GCLSVAVYGNYGKLEIWVMKDYN----VKESWAKELNIGAYI 272 (356)
Q Consensus 202 Il~fDl~~e~f~---~i~~P~~~~~~~~~~~l~~~~--g~L~~~~~~~~~~~~iW~L~~~g----~~~~W~~~~~I~~~~ 272 (356)
...||-....|. .|..|.... ......++ -+..++....+..+.||++.+.. ....|+.+. |...
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~----~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy- 507 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNA----FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKA-IGSY- 507 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCce----eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEee-eecc-
Confidence 345666666773 356676322 11111111 11123333346789999996542 234688654 3321
Q ss_pred CcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEEEcCcEEEEEeCCC
Q 018399 273 PKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKR 323 (356)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~Yd~~~ 323 (356)
. ...+...++.+||.++...-++.+-.||..+
T Consensus 508 ~-------------------k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 508 H-------------------KTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred c-------------------cCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 0 1234556778899999988888899999988
No 82
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=32.12 E-value=4.1e+02 Score=24.47 Aligned_cols=124 Identities=16% Similarity=0.217 Sum_probs=0.0
Q ss_pred cceEEEEeccCCCCCccEEEEEECCCce-----eeeeCCCCCCCCCcceeeEEEECCeEEEEEecCCCeEEEEEeccCCC
Q 018399 184 KGRLHWVTRPRRYSPVRGIVSFDIADEQ-----FREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNV 258 (356)
Q Consensus 184 ~G~lywl~~~~~~~~~~~Il~fDl~~e~-----f~~i~~P~~~~~~~~~~~l~~~~g~L~~~~~~~~~~~~iW~L~~~g~ 258 (356)
+|..-|.+.. +...|..|++..+. -..+.+|...+. +-....-+|+.+++.......+.+..+...
T Consensus 154 dg~~v~v~dl----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP---Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~-- 224 (345)
T PF10282_consen 154 DGRFVYVPDL----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGP---RHLAFSPDGKYAYVVNELSNTVSVFDYDPS-- 224 (345)
T ss_dssp TSSEEEEEET----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSE---EEEEE-TTSSEEEEEETTTTEEEEEEEETT--
T ss_pred CCCEEEEEec----CCCEEEEEEEeCCCceEEEeeccccccCCCC---cEEEEcCCcCEEEEecCCCCcEEEEeeccc--
Q ss_pred CcceeeEEEEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEE--EcCcEEEEEeC--CCCcEEEEEE
Q 018399 259 KESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLE--YKSRVLVSYDP--KRRTFNEFVF 331 (356)
Q Consensus 259 ~~~W~~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~--~~~~~l~~Yd~--~~~~~~~v~~ 331 (356)
...+....++.. .+.+.. ......-+++..+|+.|+. .....|..|++ ++++++.+..
T Consensus 225 ~g~~~~~~~~~~-~~~~~~--------------~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 225 DGSLTEIQTIST-LPEGFT--------------GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp TTEEEEEEEEES-CETTSC--------------SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred CCceeEEEEeee-cccccc--------------ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
No 83
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=31.61 E-value=3.7e+02 Score=23.77 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCceEEcceEEEEeccCCCCCccEEEEEECCCceee-eeCCCCC
Q 018399 178 PSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFR-EVPKPDC 220 (356)
Q Consensus 178 ~~~v~~~G~lywl~~~~~~~~~~~Il~fDl~~e~f~-~i~~P~~ 220 (356)
..-|.-||.+|+-... ...|+.||+.+++-. ...+|..
T Consensus 72 tG~vVYngslYY~~~~-----s~~IvkydL~t~~v~~~~~L~~A 110 (250)
T PF02191_consen 72 TGHVVYNGSLYYNKYN-----SRNIVKYDLTTRSVVARRELPGA 110 (250)
T ss_pred CCeEEECCcEEEEecC-----CceEEEEECcCCcEEEEEECCcc
Confidence 3456679999998875 479999999999998 7888864
No 84
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=26.86 E-value=75 Score=30.68 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=28.8
Q ss_pred ceeEEEEEecCCeEEEEEcCcEEEEEeCCCCcEEEEEEe
Q 018399 294 RVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFK 332 (356)
Q Consensus 294 ~~~~~~~~~~~g~il~~~~~~~l~~Yd~~~~~~~~v~~~ 332 (356)
.++.+-....+|.-++....+.++.||+++..++++.|.
T Consensus 267 tdYY~R~~nsDGkrIvFq~~GdIylydP~td~lekldI~ 305 (668)
T COG4946 267 TDYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred hhccccccCCCCcEEEEecCCcEEEeCCCcCcceeeecC
Confidence 345566666677655555556799999999999999874
No 85
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=24.81 E-value=2.1e+02 Score=25.26 Aligned_cols=35 Identities=14% Similarity=0.279 Sum_probs=27.5
Q ss_pred ecCCeEEEEEcCcEEEEEeCCCCcEEEEEEeCCCCe
Q 018399 302 LEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNW 337 (356)
Q Consensus 302 ~~~g~il~~~~~~~l~~Yd~~~~~~~~v~~~~~~~~ 337 (356)
.+++.|++.-+++.++..|++++++++. +.|...+
T Consensus 124 P~enSi~~AgGD~~~y~~dlE~G~i~r~-~rGHtDY 158 (325)
T KOG0649|consen 124 PSENSILFAGGDGVIYQVDLEDGRIQRE-YRGHTDY 158 (325)
T ss_pred cCCCcEEEecCCeEEEEEEecCCEEEEE-EcCCcce
Confidence 3667899888899999999999999886 4454433
No 86
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=22.17 E-value=5.9e+02 Score=22.97 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=47.8
Q ss_pred ceEEEEEcCC-CCceecCCCCceeecCCCceEE--cce-EEEEeccCCCCCccEEEEEECC-CceeeeeC-CCCCCCCCc
Q 018399 152 SDVQVYTVGS-PAWRSKGKLAYQFVRRPSEALV--KGR-LHWVTRPRRYSPVRGIVSFDIA-DEQFREVP-KPDCGGLNR 225 (356)
Q Consensus 152 ~~~~Vyss~t-~~Wr~~~~~p~~~~~~~~~v~~--~G~-lywl~~~~~~~~~~~Il~fDl~-~e~f~~i~-~P~~~~~~~ 225 (356)
..+.+|+..+ +.++.+...+.. .....+.+ +|. ||..... ...|.+|++. ++++..+. .|... .
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~--~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g~l~~~~~~~~~~--~- 81 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVP--GQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDGALTFAAESPLPG--S- 81 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecC--CCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCCceEEeeeecCCC--C-
Confidence 5677888864 567665433211 11122333 344 4554332 3678888886 45565443 22111 1
Q ss_pred ceeeEEE-ECCeEEEEEecCCCeEEEEEeccCC
Q 018399 226 CNYHLTV-LSGCLSVAVYGNYGKLEIWVMKDYN 257 (356)
Q Consensus 226 ~~~~l~~-~~g~L~~~~~~~~~~~~iW~L~~~g 257 (356)
...++. -+|+..++.......+.+|-+++.|
T Consensus 82 -p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 82 -PTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred -ceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 112332 2465444433336788999987544
No 87
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.91 E-value=1.7e+02 Score=27.25 Aligned_cols=63 Identities=10% Similarity=0.163 Sum_probs=46.5
Q ss_pred EEEEEcCC--CCceecCCCCceeecCCCceEEcceEEEEeccCCCC-----CccEEEEEECCCceeeeeC
Q 018399 154 VQVYTVGS--PAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYS-----PVRGIVSFDIADEQFREVP 216 (356)
Q Consensus 154 ~~Vyss~t--~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~~~~~~~-----~~~~Il~fDl~~e~f~~i~ 216 (356)
..+.+++. ..|.+++..|.........+.++|.||.....-... .-..+..||..+.+|..+.
T Consensus 60 fy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~ 129 (381)
T COG3055 60 FYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLD 129 (381)
T ss_pred ceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheec
Confidence 33445544 489999988877777777889999999998642111 1246788999999998885
No 88
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=21.58 E-value=51 Score=24.16 Aligned_cols=25 Identities=32% Similarity=0.280 Sum_probs=22.1
Q ss_pred CCCCCCcHHHHHHHHccCCcccccc
Q 018399 23 TGMETLPREIVLHILLRLPITSLVQ 47 (356)
Q Consensus 23 ~~~~~Lp~Dll~eIL~RLP~~sl~r 47 (356)
.-|..||.|+-..||..|.-++|..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999887753
No 89
>PF07370 DUF1489: Protein of unknown function (DUF1489); InterPro: IPR008320 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.38 E-value=57 Score=25.78 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=17.2
Q ss_pred ceEEcceEEEEeccCCCCCccEEEEEECCC
Q 018399 180 EALVKGRLHWVTRPRRYSPVRGIVSFDIAD 209 (356)
Q Consensus 180 ~v~~~G~lywl~~~~~~~~~~~Il~fDl~~ 209 (356)
-+.-+|+|||+.... -.....|+.|+..+
T Consensus 43 Ell~GGSlYWVikg~-i~~RQ~Il~i~~~~ 71 (137)
T PF07370_consen 43 ELLDGGSLYWVIKGQ-IQCRQRILDIEEVT 71 (137)
T ss_pred HhccCCcEEEEECCE-EEEeeeeeeeeEec
Confidence 455599999998641 11124566666543
No 90
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=21.25 E-value=6.6e+02 Score=23.24 Aligned_cols=115 Identities=12% Similarity=0.161 Sum_probs=58.7
Q ss_pred cEEEEEECCCceeeeeCCCCCCCCCcceeeEEEECCeEEEEEecCC----C-----eEEEEEecc----CCCCcceeeEE
Q 018399 200 RGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNY----G-----KLEIWVMKD----YNVKESWAKEL 266 (356)
Q Consensus 200 ~~Il~fDl~~e~f~~i~~P~~~~~~~~~~~l~~~~g~L~~~~~~~~----~-----~~~iW~L~~----~g~~~~W~~~~ 266 (356)
..++.||.++...... |..... ......+..+|+|+++..... . .+++-+... ....+.|.-..
T Consensus 86 ~~t~vyDt~t~av~~~--P~l~~p-k~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~ 162 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATG--PRLHSP-KRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS 162 (342)
T ss_pred CCeEEEECCCCeEecc--CCCCCC-CcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc
Confidence 4588899888877644 332211 112344556888888864321 1 455554331 11244555433
Q ss_pred EEccCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEEEcCc--EEEEEeCCCCcEEEEE
Q 018399 267 NIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSR--VLVSYDPKRRTFNEFV 330 (356)
Q Consensus 267 ~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~--~l~~Yd~~~~~~~~v~ 330 (356)
++.. |+. .........+.=.++.+...|++..... .-++||..+.+|++++
T Consensus 163 -LP~P-----------Pf~-~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~G 215 (342)
T PF07893_consen 163 -LPPP-----------PFV-RDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHG 215 (342)
T ss_pred -CCCC-----------Ccc-ccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence 2221 111 1000000113334445233566655544 6999999999999985
Done!