Query 018400
Match_columns 356
No_of_seqs 136 out of 1642
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 14:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 2.8E-10 9.6E-15 91.4 4.7 70 254-323 34-104 (137)
2 3b5d_A Multidrug transporter E 98.7 8.7E-08 3E-12 74.1 9.9 69 255-323 35-104 (110)
3 2i68_A Protein EMRE; transmemb 98.4 1E-06 3.4E-11 70.6 8.2 68 81-154 34-103 (137)
4 3b5d_A Multidrug transporter E 98.3 3.3E-06 1.1E-10 65.2 10.0 68 81-154 34-103 (110)
5 3l1l_A Arginine/agmatine antip 44.0 40 0.0014 31.1 6.5 47 282-328 386-432 (445)
6 3rko_J NADH-quinone oxidoreduc 42.4 1.4E+02 0.0048 24.4 13.4 31 291-321 127-159 (184)
7 4aps_A DI-OR tripeptide H+ sym 35.4 2.1E+02 0.0072 26.2 10.1 14 266-279 407-420 (491)
8 4aps_A DI-OR tripeptide H+ sym 31.5 3E+02 0.01 25.1 13.3 30 191-221 63-93 (491)
9 1pw4_A Glycerol-3-phosphate tr 28.2 3.2E+02 0.011 24.3 22.5 18 112-129 195-212 (451)
10 2ks1_B Epidermal growth factor 19.8 50 0.0017 20.2 1.6 24 307-330 21-44 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.99 E-value=2.8e-10 Score=91.42 Aligned_cols=70 Identities=19% Similarity=0.160 Sum_probs=54.3
Q ss_pred HHHHHhhHHHHhHHHhhhccCCCceeecc-chhHHHHHHHHHHHHhcCcccchhhhhHHHHHHhhhhheec
Q 018400 254 YSAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 323 (356)
Q Consensus 254 ~~g~~~~~~~~~~~~~al~~~~~~~~s~~-~~~~pv~a~~~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~ 323 (356)
..++++++++|.+|.+++++.|++.+.++ ..+.|+++.+++++++||++++.+++|+.+|++|+++....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35667889999999999999999999999 89999999999999999999999999999999999998654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.71 E-value=8.7e-08 Score=74.14 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=63.9
Q ss_pred HHHHhhHHHHhHHHhhhccCCCceeecc-chhHHHHHHHHHHHHhcCcccchhhhhHHHHHHhhhhheec
Q 018400 255 SAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 323 (356)
Q Consensus 255 ~g~~~~~~~~~~~~~al~~~~~~~~s~~-~~~~pv~a~~~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~ 323 (356)
.++++.++++.++.+++|+.|.+.+.++ ..+.|+++.+++++++||+++..+++|..+|++|+++....
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 5556788999999999999999999888 89999999999999999999999999999999999998643
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.38 E-value=1e-06 Score=70.64 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=51.9
Q ss_pred HHHHHH-HHHHHHHHHHhhccChhhHhHh-hhhhHHHHHHHHHHHhhccccccccccccchhhHHHHhhhhhhhee
Q 018400 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (356)
Q Consensus 81 ~~g~~~-~~~~~~~~~al~~~~~~~a~~l-~~~~Pv~~~lls~~~l~e~~~~~~~~~~~~~~g~~l~~~Gv~lv~~ 154 (356)
+.+++. ++++.++..++++.+++.+..+ ..+.|+++.++++++++|++++. +++|+++.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 455555 8999999999999999999888 89999999999999999999999 99999999999999863
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.34 E-value=3.3e-06 Score=65.17 Aligned_cols=68 Identities=13% Similarity=0.219 Sum_probs=62.1
Q ss_pred HHHHHH-HHHHHHHHHHhhccChhhHhHh-hhhhHHHHHHHHHHHhhccccccccccccchhhHHHHhhhhhhhee
Q 018400 81 LLSVFG-CSSQIFSFVGIQYSSPTLSTAM-LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 154 (356)
Q Consensus 81 ~~g~~~-~~~~~~~~~al~~~~~~~a~~l-~~~~Pv~~~lls~~~l~e~~~~~~~~~~~~~~g~~l~~~Gv~lv~~ 154 (356)
..+++. ..+..++..++++.|.+.+..+ ..+.|+++.+++++++||++++. |++|+.+.++|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 355555 8899999999999999999888 79999999999999999999999 99999999999999853
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=43.98 E-value=40 Score=31.14 Aligned_cols=47 Identities=2% Similarity=-0.157 Sum_probs=25.3
Q ss_pred cchhHHHHHHHHHHHHhcCcccchhhhhHHHHHHhhhhheecccccc
Q 018400 282 FKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE 328 (356)
Q Consensus 282 ~~~~~pv~a~~~~~~~~ge~~~~~~~iG~~li~~g~~l~~~~~~~~~ 328 (356)
.....++++.++..+..-..-....+.|..+++.|+.++.+.+++++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34455555555544433222223455677778888877765544433
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=42.35 E-value=1.4e+02 Score=24.37 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=22.5
Q ss_pred HHHHHHHhcCcccchhhhhHHHHH--Hhhhhhe
Q 018400 291 IVMDVVIVGDAFCLGSLIGAMIIV--AGFYAVM 321 (356)
Q Consensus 291 ~~~~~~~~ge~~~~~~~iG~~li~--~g~~l~~ 321 (356)
--+|..++++..-+.+..+..+.+ .|.+...
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLa 159 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVG 159 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888899998889999887765 3444443
No 7
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=35.37 E-value=2.1e+02 Score=26.18 Aligned_cols=14 Identities=0% Similarity=-0.254 Sum_probs=6.8
Q ss_pred HHHhhhccCCCcee
Q 018400 266 LCTWCLSRTGPLYV 279 (356)
Q Consensus 266 ~~~~al~~~~~~~~ 279 (356)
.+....+..|...-
T Consensus 407 ~~~~~~~~~p~~~~ 420 (491)
T 4aps_A 407 GLSVTTKLAPKAFN 420 (491)
T ss_dssp HHHHHHHHTTTTCS
T ss_pred HHHHHHHhCCHHHH
Confidence 34455555554433
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=31.52 E-value=3e+02 Score=25.06 Aligned_cols=30 Identities=10% Similarity=-0.057 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHh-hchhHHHHHHHHH
Q 018400 191 EAFMNSAWFILQALILRK-FAAVLIIMFYLFF 221 (356)
Q Consensus 191 s~~~~a~~~v~~~~~~~~-~~~~~~~~~~~~~ 221 (356)
..+..++......++.++ .. ..........
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g-~r~~~~~~~~ 93 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIG-ARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 344455555666666666 54 4444433333
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=28.18 E-value=3.2e+02 Score=24.33 Aligned_cols=18 Identities=6% Similarity=0.065 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHhhcccc
Q 018400 112 IPAFTFVLAIIFRLEKLN 129 (356)
Q Consensus 112 ~Pv~~~lls~~~l~e~~~ 129 (356)
..+...++.+++.+|++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHhhccCCHh
Confidence 334444555566676554
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=19.85 E-value=50 Score=20.18 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhhhheecccccccc
Q 018400 307 LIGAMIIVAGFYAVMWGKSKEEKT 330 (356)
Q Consensus 307 ~iG~~li~~g~~l~~~~~~~~~~~ 330 (356)
+.+.+++..+.+++.+++++++++
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred HHHHHHHHHHHHHHhhhhHhhccC
Done!