Query 018400
Match_columns 356
No_of_seqs 136 out of 1642
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 14:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018400.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018400hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 69.2 30 0.0022 29.0 22.2 27 253-279 351-377 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 42.9 85 0.0062 25.9 14.4 37 193-230 70-106 (447)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 41.2 15 0.0011 18.0 2.8 19 182-200 2-20 (27)
4 d1iwga8 f.35.1.1 (A:513-566,A: 29.4 1.1E+02 0.0083 23.3 10.4 28 288-315 95-122 (222)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 11.2 4E+02 0.029 22.1 19.9 42 190-233 289-330 (383)
6 d1q90a3 f.23.23.1 (A:248-292) 10.8 1.4E+02 0.01 16.6 4.0 30 180-209 3-32 (45)
7 d1q90r_ f.23.12.1 (R:) ISP sub 5.6 2.5E+02 0.018 15.1 3.9 18 69-86 5-22 (39)
8 d1kqfb2 f.23.22.1 (B:246-290) 5.1 1.8E+02 0.013 16.3 1.9 28 298-325 8-35 (45)
9 d1iwga7 f.35.1.1 (A:7-37,A:331 5.1 1.6E+02 0.012 21.9 2.4 28 288-315 77-104 (199)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 4.3 1.4E+02 0.01 19.2 1.2 15 313-327 31-45 (91)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=69.21 E-value=30 Score=28.98 Aligned_cols=27 Identities=7% Similarity=-0.117 Sum_probs=13.2
Q ss_pred HHHHHHhhHHHHhHHHhhhccCCCcee
Q 018400 253 LYSAVIGTGFRVGLCTWCLSRTGPLYV 279 (356)
Q Consensus 253 ~~~g~~~~~~~~~~~~~al~~~~~~~~ 279 (356)
...|+.........+....+..+....
T Consensus 351 ~~~g~~~~~~~~~~~~~~~~~~p~~~~ 377 (447)
T d1pw4a_ 351 IVIGFLIYGPVMLIGLHALELAPKKAA 377 (447)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 344443334444445555666665443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=42.94 E-value=85 Score=25.86 Aligned_cols=37 Identities=0% Similarity=-0.112 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHH
Q 018400 193 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAF 230 (356)
Q Consensus 193 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (356)
+.+++......++.++.. .........+...+..+..
T Consensus 70 ~~~~~~~~~~G~l~Dr~g-~r~~~~~~~~~~~~~~~~~ 106 (447)
T d1pw4a_ 70 IAYGFSKFIMGSVSDRSN-PRVFLPAGLILAAAVMLFM 106 (447)
T ss_dssp HHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHhhc
Confidence 344455555666666664 5444444444444444333
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=41.18 E-value=15 Score=18.00 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018400 182 ILGGFFLAAEAFMNSAWFI 200 (356)
Q Consensus 182 ~~G~~~~l~s~~~~a~~~v 200 (356)
.+|.++.-+++++||.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 4688888899999998864
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=29.42 E-value=1.1e+02 Score=23.34 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCcccchhhhhHHHHHH
Q 018400 288 VFSIVMDVVIVGDAFCLGSLIGAMIIVA 315 (356)
Q Consensus 288 v~a~~~~~~~~ge~~~~~~~iG~~li~~ 315 (356)
+.+.+.+..+.|.+++....+|.++.+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3445566777889999988888776553
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=11.23 E-value=4e+02 Score=22.05 Aligned_cols=42 Identities=7% Similarity=-0.130 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHH
Q 018400 190 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALI 233 (356)
Q Consensus 190 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 233 (356)
.+.+++-.+..+.+|. +.+|+..........+..-.+...++
T Consensus 289 ~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 289 AGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHHHh
Confidence 3445554445444443 44567766666555554444444443
No 6
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.76 E-value=1.4e+02 Score=16.58 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018400 180 SWILGGFFLAAEAFMNSAWFILQALILRKF 209 (356)
Q Consensus 180 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~ 209 (356)
.+..|.+..+.+.+..-+..++-||-.++.
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888776665
No 7
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.55 E-value=2.5e+02 Score=15.09 Aligned_cols=18 Identities=17% Similarity=0.288 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 018400 69 PQLTFSILCSFFLLSVFG 86 (356)
Q Consensus 69 ~~~~~~~~~~~~~~g~~~ 86 (356)
|...||+.+-+++.|...
T Consensus 5 pDMgrR~~MNLll~G~~~ 22 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAG 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccc
Confidence 455678888888887766
No 8
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.14 E-value=1.8e+02 Score=16.26 Aligned_cols=28 Identities=18% Similarity=0.059 Sum_probs=15.6
Q ss_pred hcCcccchhhhhHHHHHHhhhhheeccc
Q 018400 298 VGDAFCLGSLIGAMIIVAGFYAVMWGKS 325 (356)
Q Consensus 298 ~ge~~~~~~~iG~~li~~g~~l~~~~~~ 325 (356)
.+...-+....|+...+++.++......
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~fHYv~vG 35 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIFHYIGIG 35 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhheeC
Confidence 3444555566666666666665544333
No 9
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.11 E-value=1.6e+02 Score=21.91 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcCcccchhhhhHHHHHH
Q 018400 288 VFSIVMDVVIVGDAFCLGSLIGAMIIVA 315 (356)
Q Consensus 288 v~a~~~~~~~~ge~~~~~~~iG~~li~~ 315 (356)
+........++|.+++.....+..+.+.
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 3334444556777887777766665554
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.27 E-value=1.4e+02 Score=19.23 Aligned_cols=15 Identities=7% Similarity=-0.296 Sum_probs=6.7
Q ss_pred HHHhhhhheeccccc
Q 018400 313 IVAGFYAVMWGKSKE 327 (356)
Q Consensus 313 i~~g~~l~~~~~~~~ 327 (356)
++.|...+...|.|+
T Consensus 31 ~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 31 PAILMAVGFAWKYRA 45 (91)
T ss_dssp HHHHHHHTTTTTTTT
T ss_pred HHHHHHHhhheeeec
Confidence 444444444444443
Done!