RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018401
(356 letters)
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 352 bits (905), Expect = e-120
Identities = 189/305 (61%), Positives = 234/305 (76%), Gaps = 4/305 (1%)
Query: 18 TWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEG 77
+ + L PL+ D E+ DII+ E RQ GLELI SENF S +V++A+GS + NKYS G
Sbjct: 3 SHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLG 62
Query: 78 YPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWG---GSLSGSPSNFQVYTALLKPHD 134
YPG RYYGG E+ID E+LCQKRAL+A+ LDP+ WG SGSP+NF VYTAL++PH
Sbjct: 63 YPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHG 122
Query: 135 RIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK 194
RIM LDLP GGHL+HG+ TD KKISA SIFFE+M Y++N TGYIDYD+LE++A LF PK
Sbjct: 123 RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPK 182
Query: 195 LIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTH 254
LI+AG S Y+R DY R+RK+ ++ A ++ADMAHISGLV AGV+PSPFE+ VVTTTTH
Sbjct: 183 LIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTH 242
Query: 255 KSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVAL 313
K+LRG R MIF+R+GV+ ++ K GKE+ Y+ E IN AVFPGLQGGPHNH I G+AVAL
Sbjct: 243 KTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVAL 302
Query: 314 KQVCT 318
KQ T
Sbjct: 303 KQAMT 307
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 324 bits (831), Expect = e-109
Identities = 191/299 (63%), Positives = 236/299 (78%), Gaps = 4/299 (1%)
Query: 24 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 83
L DPE+ ++++ EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RY
Sbjct: 5 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRY 64
Query: 84 YGGNEYIDMAESLCQKRALEAFRLDPEKWG---GSLSGSPSNFQVYTALLKPHDRIMALD 140
YGG E +D E LCQ+RALEAF LDP +WG SGSP+N VYTALL+PHDRIM LD
Sbjct: 65 YGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLD 124
Query: 141 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGA 200
LP GGHL+HGY +D K+ISA SIFFE+MPY+LN TG IDY+QL +A LFRP+LI+AG
Sbjct: 125 LPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT 184
Query: 201 SAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 260
SAYARL DY R+R+VC++ KA +LADMAHISGLVAA VIPSPF++AD+VTTTTHK+LRG
Sbjct: 185 SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 244
Query: 261 RGAMIFFRKGVKEINKQ-GKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 318
R +IF+RKGVK ++ + G+E+ Y +E++IN AVFP LQGGPHNH I +AVALKQ CT
Sbjct: 245 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACT 303
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 310 bits (795), Expect = e-104
Identities = 126/291 (43%), Positives = 179/291 (61%), Gaps = 20/291 (6%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
L DP++ IE E+ RQ +ELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGGSLSGSPSNFQVYTALLKPHDRIMALDLPHGGH 146
EY+D+ E L ++RA + F + SG+ +N VY +L+ D ++ ++L HGGH
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPH-SGAQANMAVYFTVLEHGDTVLGMNLSHGGH 122
Query: 147 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARL 206
L+HG ++ + + + Y ++ T IDYD + + A L RPKLIVA ASAY R+
Sbjct: 123 LTHG-----SPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRI 177
Query: 207 YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF 266
D+ + R++ ++ A ++ DMAHI+GLVAAG+ P+P YA VTTTTHK+LRGPRG MI
Sbjct: 178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMIL 237
Query: 267 FRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 317
+ ++I++A+FPG+QGGP H I AVA +
Sbjct: 238 C--------------QEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEAL 274
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 304 bits (779), Expect = e-102
Identities = 135/292 (46%), Positives = 183/292 (62%), Gaps = 18/292 (6%)
Query: 27 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGG 86
+ D E+ +E EK RQ + +ELI SEN+TS VMQA GS +TNKY+EGYPG RYYGG
Sbjct: 7 IADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGG 66
Query: 87 NEYIDMAESLCQKRALEAFRLDPEKWGGSLSGSPSNFQVYTALLKPHDRIMALDLPHGGH 146
EY+D+ E L RA E F D SGS +NF VYTALL+P D ++ ++L HGGH
Sbjct: 67 CEYVDIVEQLAIDRAKELFGADYANVQPH-SGSQANFAVYTALLEPGDTVLGMNLAHGGH 125
Query: 147 LSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARL 206
L+HG ++ + +PY ++ TG+IDY LEK A +PK+I+ G SAY+ +
Sbjct: 126 LTHG-----SPVNFSGKLYNIVPYGIDA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 179
Query: 207 YDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIF 266
D+ ++R++ + A + DMAH++GLVAAGV P+P +A VVTTTTHK+L GPRG +I
Sbjct: 180 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 239
Query: 267 FRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVCT 318
+ G + + +K+N AVFPG QGGP H I G AVALK+
Sbjct: 240 AKGGSE-----------ELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAME 280
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 106 bits (265), Expect = 3e-26
Identities = 36/309 (11%), Positives = 80/309 (25%), Gaps = 41/309 (13%)
Query: 46 WKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEY-IDMAESL-------- 96
+K L+ S G K+ G ++G + D+ +
Sbjct: 4 FKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLI 63
Query: 97 -------CQKRALEAFRLDPEKWGGSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSH 149
+K A + D + + S +N V +AL+ D ++ H +
Sbjct: 64 HEGPAVAAEKHAARVYNAD-KTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNS 122
Query: 150 GYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK----------LIVAG 199
+ + + D ++ + A P+ ++
Sbjct: 123 ALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQL 182
Query: 200 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIP----------SPFEYADVV 249
+ +Y+ + K + D A + ++ P + +V
Sbjct: 183 GTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIV 242
Query: 250 TTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGL 309
+ HK G +K ++ Y + N + + P L
Sbjct: 243 VQSVHKQQAGFSQTSQIHKKDSHI----KGQLRYCDHKHFNNSFNLFMSTSPFYPMYAAL 298
Query: 310 AVALKQVCT 318
V
Sbjct: 299 DVNAAMQEG 307
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 104 bits (259), Expect = 2e-25
Identities = 34/282 (12%), Positives = 77/282 (27%), Gaps = 48/282 (17%)
Query: 67 GSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGGSLSGSPSNFQVY 126
G+V + + G + G+ + F + + G +
Sbjct: 53 GAVTQSMQAAMMRGDEAFSGSRSYYALA----ESVKNIFGY--QYTIPTHQGRGAEQIYI 106
Query: 127 TALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVS--------IFFETMPYRLNESTGY 178
L+K ++ LD S+ + T+ S ++ I + G
Sbjct: 107 PVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGN 166
Query: 179 IDYDQLEKSATLFRPKLIV---------AGASAYARLYDYERIRKVCNKQKAIMLADMAH 229
D + LE+ P + + L + + + + K ++ D A
Sbjct: 167 FDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSAR 226
Query: 230 ISGLVAAGVIPSP--------------FEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN 275
+ ++YAD++ + K P G ++ +
Sbjct: 227 FAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDD----- 281
Query: 276 KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQVC 317
+ + + +G P + G A+ V
Sbjct: 282 ------SFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVG 317
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 81.9 bits (201), Expect = 9e-18
Identities = 35/320 (10%), Positives = 83/320 (25%), Gaps = 52/320 (16%)
Query: 51 LIPSEN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYID-MAESLCQKRALEAF 105
L+PS + S A+ ++ G Y G+ + + + +
Sbjct: 37 LLPSSAVYIDLLTDSGTNAMSDHQ---WAAMITGDEAYAGSRNYYDLKDKAKELFNYDYI 93
Query: 106 RLDPEKWGGSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFF 165
G + ++ LLK + P H T
Sbjct: 94 IPAH-------QGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAI 146
Query: 166 ETM------PYRLNESTGYIDYDQLEKSATLFRPKLI---------VAGASAYARLYDYE 210
+ ++ G D +L+++ I + + + +
Sbjct: 147 NIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLK 206
Query: 211 RIRKVCNKQKAIMLADMAHISGLVAAG--------------VIPSPFEYADVVTTTTHKS 256
+ ++ + ++ D A VI ++YAD +T + K
Sbjct: 207 EVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKD 266
Query: 257 LRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQV 316
G ++ R +E+F ++ GG + + L++
Sbjct: 267 PLLNIGGLVAIRD--------NEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG 318
Query: 317 CTLITFSHIHVFSLHVYPAF 336
+ ++
Sbjct: 319 TEEEYLHYRIGQVKYLGDRL 338
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 75.2 bits (184), Expect = 1e-15
Identities = 34/301 (11%), Positives = 75/301 (24%), Gaps = 63/301 (20%)
Query: 51 LIPSEN----FTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYID-----MAESLCQKRA 101
L+ S++ + S A+ ++ G Y G+E + E K
Sbjct: 37 LLNSKDIYIDLLTDSGTNAMSDKQ---WAGMMIGDEAYAGSENFYHLEKTVKELFGFKHI 93
Query: 102 LEAFRLDPEKWGGSLSGSPSNFQVYTALLKPHDRIMA---LDLPHGGHLSHGYQTDTKKI 158
+ + G + + +KP + +G
Sbjct: 94 V-----------PTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNG-----ATF 137
Query: 159 SAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLI---------VAGASAYARLYDY 209
+ G ID ++L + I + +
Sbjct: 138 VDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANM 197
Query: 210 ERIRKVCNKQKAIMLADMAHIS--------------GLVAAGVIPSPFEYADVVTTTTHK 255
+ ++ + + D + ++ F YAD T + K
Sbjct: 198 RAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKK 257
Query: 256 SLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQ 315
G + +E+F +E + GG + +A+ L++
Sbjct: 258 DCLVNIGGFLCMND---------EEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLRE 308
Query: 316 V 316
Sbjct: 309 A 309
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 40.7 bits (94), Expect = 2e-04
Identities = 24/199 (12%), Positives = 56/199 (28%), Gaps = 14/199 (7%)
Query: 86 GNEYIDMAESLCQKRALEAFRLDPEKWGGSLSGSPSNFQVYTALLKPHDRIMALDLPHGG 145
G + + + + L+ +S S +A K + + +
Sbjct: 107 GASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVI----YP 162
Query: 146 HLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPK------LIVAG 199
+ SH +++ + L+ Y+ + +E + L
Sbjct: 163 YASHKSPIKAVSFVGMNMRL--VETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLT 220
Query: 200 ASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPF--EYADVVTTTTHKSL 257
D I K+C + + A+ D V +++ K+L
Sbjct: 221 FFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNL 280
Query: 258 RGPRGAMIFFRKGVKEINK 276
P G + + + I +
Sbjct: 281 LTPIGGGLVYSTDAEFIKE 299
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 34.4 bits (78), Expect = 0.020
Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 14/162 (8%)
Query: 117 SGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNEST 176
S +N ++ LL D I++ L H + K+ + + + RL E+
Sbjct: 113 SCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAR 172
Query: 177 GYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAA 236
L + +F S + + + + + +K A+++ D +H G V
Sbjct: 173 EAGARHVLIATDGVF---------SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGE 223
Query: 237 GVIPSPFEY-----ADVVTTTTHKSLRGPRGAMIFFRKGVKE 273
S D++T T K+L G G RK V E
Sbjct: 224 NGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVE 265
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 31.3 bits (70), Expect = 0.19
Identities = 42/255 (16%), Positives = 91/255 (35%), Gaps = 24/255 (9%)
Query: 34 IADIIEHEKARQWKGLELIP-SENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDM 92
+ + +G++L+ + + V ++G Y ++
Sbjct: 16 TVAVNAKALELRRQGVDLVALTAGEPDFDTPEHVKEAARRALAQGKTK--YAPPAGIPEL 73
Query: 93 AESLCQKRALE-AFRLDPEKWGGSLSGSPSNFQVYTALLKPHDRIMALDLPHGGHLSHGY 151
E+L +K E + PE+ ++ GS + F ++ A+L P D ++ L P+ Y
Sbjct: 74 REALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAILDPGDEVIVLS-PY----WVSY 128
Query: 152 QTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGAS----AYARLY 207
+ V + ET+P D +++ ++ T L+V + A
Sbjct: 129 PEMVRFAGGVVVEVETLPEEGF----VPDPERVRRAITPRTKALVVNSPNNPTGAVYPKE 184
Query: 208 DYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFEYAD---VVTTTTHKSLR--GPR- 261
E + ++ + +++D L+ G SP A + K+ G R
Sbjct: 185 VLEALARLAVEHDFYLVSD-EIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRI 243
Query: 262 GAMIFFRKGVKEINK 276
G ++ +K +
Sbjct: 244 GYACGPKEVIKAMAS 258
>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
[TaxId: 562]}
Length = 759
Score = 27.8 bits (62), Expect = 2.1
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 272 KEINKQGKEVFYDYEEKINQAVFPGLQG----GPHNHTITGL 309
+E++ K++F +Y + NQ VF + +TGL
Sbjct: 127 RELDPMIKKIFTEYRKTHNQGVFDVYTPDILRCRKSGVLTGL 168
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS)
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 335
Score = 27.6 bits (60), Expect = 2.2
Identities = 23/176 (13%), Positives = 45/176 (25%), Gaps = 40/176 (22%)
Query: 8 AVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVG 67
+ + W + ++ + + + + L PSE +
Sbjct: 187 EILGDLGKEIPWGEDID---TEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYDNK 243
Query: 68 SVMTNKYSEGYPGARYYGGNEYIDMAESLCQKRALEAFRLDPEKWGGSLSGSPSNFQVYT 127
+ + Y G G + + ++ L+PE F+ Y
Sbjct: 244 PEICRAFDLEYRGVEISSGGQREHRHD--ILVEQIKEKGLNPES-----------FEFYL 290
Query: 128 ALLK----PH-------DRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRL 172
+ PH +R++ D I V I F RL
Sbjct: 291 KAFRYGMPPHGGFGLGAERLIKQ------------MLDLPNIREV-ILFPRDRRRL 333
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia
coli [TaxId: 562]}
Length = 60
Score = 24.9 bits (54), Expect = 3.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 15 NGVTWPKQLNAPLEVVDPEIA 35
NGV+ + P+ ++ PE+A
Sbjct: 15 NGVSVDYETETPMTLLVPEVA 35
>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase
(OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 26.2 bits (57), Expect = 5.4
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 268 RKGVKEINKQGKEVFYD 284
+K E+ K+ ++ D
Sbjct: 36 KKIFDELAKRNLKIILD 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0454 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,356,906
Number of extensions: 62936
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 18
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)