BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018402
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HFQ|A Chain A, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118.
pdb|3HFQ|B Chain B, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118
Length = 347
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 10 QLGFYNTTPNAFTLALRLGIKKQEPVFRWVWEANRGKPVRENAVFSLGADGNLVLAEADG 69
QLG T P +T + +++ +NRG AVF++ ADG+L L +
Sbjct: 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTL--AVFAVTADGHLTLIQQIS 282
Query: 70 TVGNFIWQSFDY-PTDTLLV------------GQSLRVGRVTKLVSRLSVKENV 110
T G+F + FD PT+ +V + L G+++ L ++V E V
Sbjct: 283 TEGDF-PRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQKDVTVPEGV 335
>pdb|2I74|A Chain A, Crystal Structure Of Mouse Peptide N-Glycanase C-Terminal
Domain In Complex With Mannopentaose
pdb|2I74|B Chain B, Crystal Structure Of Mouse Peptide N-Glycanase C-Terminal
Domain In Complex With Mannopentaose
Length = 189
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 239 CGKLGVCEDNQCVACPT---EKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYN 295
CG G+ D + + E G + W + E AQ N G K+ +YN
Sbjct: 84 CGSAGLKVDTVSIRTSSQSFESGSVRWKLRSETAQVNLLGDKNLR------------SYN 131
Query: 296 FYDGIGDITIE 306
+ G ++T+E
Sbjct: 132 DFSGATEVTLE 142
>pdb|2G9F|A Chain A, Crystal Structure Of Intein-Tagged Mouse Pngase C-Terminal
Domain
Length = 201
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 239 CGKLGVCEDNQCVACPT---EKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYN 295
CG G+ D + + E G + W + E AQ N G K+ +YN
Sbjct: 104 CGSAGLKVDTVSIRTSSQSFESGSVRWKLRSETAQVNLLGDKNLR------------SYN 151
Query: 296 FYDGIGDITIE 306
+ G ++T+E
Sbjct: 152 DFSGATEVTLE 162
>pdb|2G9G|A Chain A, Crystal Structure Of His-Tagged Mouse Pngase C-Terminal
Domain
Length = 221
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 239 CGKLGVCEDNQCVACPT---EKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYN 295
CG G+ D + + E G + W + E AQ N G K+ +YN
Sbjct: 124 CGSAGLKVDTVSIRTSSQSFESGSVRWKLRSETAQVNLLGDKNLR------------SYN 171
Query: 296 FYDGIGDITIE 306
+ G ++T+E
Sbjct: 172 DFSGATEVTLE 182
>pdb|2M47|A Chain A, Solution Nmr Structure Of The Polyketide_cyc-like Protein
Cgl2372 From Corynebacterium Glutamicum, Northeast
Structural Genomics Consortium Target Cgr160
Length = 163
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Query: 210 EEERFTLFGKDFRGSNA---RNWDSECQMPERCGKLGVCEDNQCVACPTEKGLIGWSNKC 266
+E+ + G F G N R W++ ++ V E N+C G + W
Sbjct: 43 DEDEGPVVGAHFTGRNVTPERTWETRSEVI-------VAEPNRCFGWSVTDGNVKWIYSM 95
Query: 267 EPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKR 311
EP + T+ + + F+D GD +IE+ KR
Sbjct: 96 EPLEEGTVLTESWEFTP-------KGQRFFHDKFGDKSIEEIEKR 133
>pdb|1SRQ|A Chain A, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|B Chain B, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|C Chain C, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|D Chain D, Crystal Structure Of The Rap1gap Catalytic Domain
Length = 341
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 254 PTEKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCS 313
PT K + + + +F G +HF+YY L++ ++ YD IGD E
Sbjct: 1 PTTKVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGD--QEHLRLLLR 58
Query: 314 SNCRCVGYFYDTSVSRCWIAF 334
+ CR ++D C F
Sbjct: 59 TKCRT---YHDVIPISCLTEF 76
>pdb|3BRW|A Chain A, Structure Of The Rap-Rapgap Complex
pdb|3BRW|B Chain B, Structure Of The Rap-Rapgap Complex
pdb|3BRW|C Chain C, Structure Of The Rap-Rapgap Complex
Length = 341
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 254 PTEKGLIGWSNKCEPAQANFCGTKHFHYYKLESVRHYMCTYNFYDGIGDITIEDCGKRCS 313
PT K + + + +F G +HF+YY L++ ++ YD IGD E
Sbjct: 1 PTTKVKLECNPTARIYRKHFLGKEHFNYYSLDTALGHLVFSLKYDVIGD--QEHLRLLLR 58
Query: 314 SNCRCVGYFYDTSVSRCWIAF 334
+ CR ++D C F
Sbjct: 59 TKCRT---YHDVIPISCLTEF 76
>pdb|1ZV2|A Chain A, Cu-Containing Nitrite Reductase
pdb|2A3T|A Chain A, Cu-containing Nitrite Reductase
pdb|2DWS|A Chain A, Cu-containing Nitrite Reductase At Ph 8.4 With Bound
Nitrite
Length = 328
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 43 NRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYP-----TDTLLVGQSLRVGRV 97
+ GKPVR + V+ +G + + + DGT F S Y DTL+ + G V
Sbjct: 154 HEGKPVRYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAV 213
Query: 98 TKLVSRLSVKENV 110
L ++K V
Sbjct: 214 GALTGEGALKAKV 226
>pdb|2DWT|A Chain A, Cu-Containing Nitrite Reductase At Ph 6.0 With Bound
Nitrite
pdb|2DY2|A Chain A, Nitrite Reductase Ph 6.0
Length = 329
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 43 NRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYP-----TDTLLVGQSLRVGRV 97
+ GKPVR + V+ +G + + + DGT F S Y DTL+ + G V
Sbjct: 154 HEGKPVRYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAV 213
Query: 98 TKLVSRLSVKENV 110
L ++K V
Sbjct: 214 GALTGEGALKAKV 226
>pdb|1MZY|A Chain A, Crystal Structure Of Nitrite Reductase
Length = 333
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 43 NRGKPVRENAVFSLGADGNLVLAEADGTVGNFIWQSFDYP-----TDTLLVGQSLRVGRV 97
+ GKPVR + V+ +G + + + DGT F S Y DTL+ + G V
Sbjct: 159 HEGKPVRYDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAV 218
Query: 98 TKLVSRLSVKENV 110
L ++K V
Sbjct: 219 GALTGEGALKAKV 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,901,967
Number of Sequences: 62578
Number of extensions: 523398
Number of successful extensions: 879
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 13
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)