Query 018405
Match_columns 356
No_of_seqs 188 out of 2169
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 08:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3178 Hydroxyindole-O-methyl 100.0 1.5E-45 3.3E-50 324.5 28.4 338 10-356 3-342 (342)
2 TIGR02716 C20_methyl_CrtF C-20 100.0 3.2E-38 6.9E-43 287.4 25.8 290 26-343 3-305 (306)
3 PF00891 Methyltransf_2: O-met 100.0 7.3E-39 1.6E-43 282.0 20.1 236 95-333 3-241 (241)
4 COG2226 UbiE Methylase involve 99.8 4.9E-19 1.1E-23 151.9 16.5 160 191-355 49-236 (238)
5 PLN02233 ubiquinone biosynthes 99.8 1.3E-17 2.9E-22 147.9 19.2 160 191-355 71-260 (261)
6 PF01209 Ubie_methyltran: ubiE 99.8 9.5E-20 2.1E-24 158.1 5.1 161 191-356 45-233 (233)
7 TIGR00740 methyltransferase, p 99.8 1E-18 2.2E-23 153.7 10.5 162 192-355 52-238 (239)
8 PTZ00098 phosphoethanolamine N 99.8 2.3E-17 5E-22 146.6 16.2 156 181-346 41-204 (263)
9 PRK15451 tRNA cmo(5)U34 methyl 99.8 2.9E-18 6.2E-23 151.3 10.1 153 192-345 55-231 (247)
10 TIGR02752 MenG_heptapren 2-hep 99.7 3.2E-17 6.9E-22 143.5 15.5 167 183-356 36-231 (231)
11 PRK14103 trans-aconitate 2-met 99.7 7.3E-17 1.6E-21 143.2 16.3 157 181-341 18-181 (255)
12 PLN02244 tocopherol O-methyltr 99.7 2.4E-16 5.1E-21 145.2 17.8 161 181-346 102-280 (340)
13 KOG1540 Ubiquinone biosynthesi 99.7 2.7E-16 5.7E-21 132.5 14.6 151 185-341 93-278 (296)
14 PLN02490 MPBQ/MSBQ methyltrans 99.7 1E-15 2.2E-20 139.1 17.0 140 192-346 112-258 (340)
15 PRK00216 ubiE ubiquinone/menaq 99.7 2E-15 4.2E-20 132.8 17.9 169 182-356 41-238 (239)
16 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 2.7E-15 5.8E-20 130.5 17.1 168 183-356 30-223 (223)
17 PLN02336 phosphoethanolamine N 99.7 1.2E-15 2.6E-20 147.5 16.2 152 181-345 255-415 (475)
18 COG2230 Cfa Cyclopropane fatty 99.7 8.6E-16 1.9E-20 134.2 13.4 158 180-346 60-225 (283)
19 TIGR00452 methyltransferase, p 99.7 2.7E-15 5.8E-20 135.3 16.5 154 182-345 111-274 (314)
20 PRK15068 tRNA mo(5)U34 methylt 99.7 1.9E-15 4.1E-20 137.8 15.3 153 183-345 113-275 (322)
21 PF13489 Methyltransf_23: Meth 99.7 9.6E-16 2.1E-20 126.2 11.2 137 191-341 20-160 (161)
22 PF02353 CMAS: Mycolic acid cy 99.7 1.1E-15 2.5E-20 135.6 12.3 162 180-346 50-219 (273)
23 smart00828 PKS_MT Methyltransf 99.6 2.4E-15 5.1E-20 131.0 13.2 136 195-346 1-146 (224)
24 PLN02396 hexaprenyldihydroxybe 99.6 8.4E-16 1.8E-20 139.2 10.4 142 193-344 131-289 (322)
25 PRK11207 tellurite resistance 99.6 5E-15 1.1E-19 126.0 14.4 140 182-342 20-168 (197)
26 PRK01683 trans-aconitate 2-met 99.6 1.2E-14 2.6E-19 129.3 16.3 156 181-339 20-182 (258)
27 PRK08317 hypothetical protein; 99.6 1.6E-14 3.4E-19 127.0 16.5 157 183-345 10-177 (241)
28 PF06080 DUF938: Protein of un 99.6 3.2E-14 6.9E-19 118.5 17.0 161 193-356 24-204 (204)
29 PRK11873 arsM arsenite S-adeno 99.6 1.1E-14 2.3E-19 130.7 15.1 145 191-344 75-230 (272)
30 PF12847 Methyltransf_18: Meth 99.6 1.8E-15 3.8E-20 116.9 7.9 98 193-290 1-111 (112)
31 PRK11036 putative S-adenosyl-L 99.6 1.2E-14 2.7E-19 128.9 11.6 157 182-345 35-208 (255)
32 COG4106 Tam Trans-aconitate me 99.6 1.9E-14 4.1E-19 118.5 11.6 172 181-356 19-203 (257)
33 PRK06922 hypothetical protein; 99.6 1.7E-14 3.6E-19 138.9 13.2 142 153-295 377-542 (677)
34 PF13847 Methyltransf_31: Meth 99.6 2.2E-15 4.7E-20 123.1 6.2 139 192-336 2-152 (152)
35 PRK05785 hypothetical protein; 99.6 9.8E-14 2.1E-18 120.5 16.1 156 193-356 51-224 (226)
36 TIGR00477 tehB tellurite resis 99.6 8.2E-14 1.8E-18 118.4 13.8 140 183-343 21-168 (195)
37 PRK06202 hypothetical protein; 99.6 2.2E-13 4.7E-18 119.3 16.8 147 191-345 58-223 (232)
38 TIGR02072 BioC biotin biosynth 99.5 1.7E-13 3.7E-18 120.4 15.2 136 193-343 34-175 (240)
39 smart00138 MeTrc Methyltransfe 99.5 2.2E-13 4.8E-18 120.9 15.9 109 181-290 88-242 (264)
40 KOG4300 Predicted methyltransf 99.5 1E-13 2.2E-18 113.4 12.4 177 166-350 50-238 (252)
41 PF08241 Methyltransf_11: Meth 99.5 1.2E-14 2.5E-19 108.5 6.5 88 198-288 1-95 (95)
42 PRK10258 biotin biosynthesis p 99.5 3.5E-13 7.5E-18 119.4 16.6 150 178-339 28-182 (251)
43 TIGR02021 BchM-ChlM magnesium 99.5 2.4E-13 5.2E-18 117.9 14.6 147 191-347 53-209 (219)
44 PRK11705 cyclopropane fatty ac 99.5 4E-13 8.6E-18 125.3 15.6 155 181-346 156-314 (383)
45 TIGR03587 Pse_Me-ase pseudamin 99.5 2.4E-13 5.2E-18 116.0 12.6 103 191-295 41-147 (204)
46 KOG1270 Methyltransferases [Co 99.5 5.6E-14 1.2E-18 119.4 8.3 141 194-343 90-248 (282)
47 PF08242 Methyltransf_12: Meth 99.5 7.2E-15 1.6E-19 110.8 2.0 87 198-286 1-99 (99)
48 PLN02336 phosphoethanolamine N 99.5 3.9E-13 8.5E-18 130.1 14.3 144 181-341 26-179 (475)
49 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.8E-14 8.3E-19 119.7 5.9 143 193-345 59-216 (243)
50 PRK08287 cobalt-precorrin-6Y C 99.5 8.5E-13 1.8E-17 111.6 13.7 125 185-344 24-156 (187)
51 PRK04266 fibrillarin; Provisio 99.5 3.2E-12 7E-17 110.4 16.6 142 187-355 67-224 (226)
52 PRK12335 tellurite resistance 99.5 9.7E-13 2.1E-17 118.7 13.9 132 192-343 119-258 (287)
53 PRK07580 Mg-protoporphyrin IX 99.5 2E-12 4.4E-17 113.0 15.4 149 191-348 61-218 (230)
54 PF08003 Methyltransf_9: Prote 99.4 1E-12 2.2E-17 115.1 12.2 153 182-345 105-268 (315)
55 TIGR00537 hemK_rel_arch HemK-r 99.4 3.5E-12 7.6E-17 107.0 14.5 133 193-356 19-177 (179)
56 PF13649 Methyltransf_25: Meth 99.4 1E-13 2.2E-18 104.9 4.7 88 197-284 1-101 (101)
57 KOG2361 Predicted methyltransf 99.4 1E-12 2.2E-17 110.3 9.9 145 195-342 73-235 (264)
58 TIGR03438 probable methyltrans 99.4 1.7E-12 3.7E-17 117.7 12.2 104 182-288 55-175 (301)
59 PRK05134 bifunctional 3-demeth 99.4 3.2E-12 6.9E-17 112.0 13.0 147 191-344 46-205 (233)
60 PLN02585 magnesium protoporphy 99.4 2.7E-12 6E-17 116.0 12.6 146 193-348 144-303 (315)
61 TIGR00138 gidB 16S rRNA methyl 99.4 9.6E-12 2.1E-16 104.1 13.6 91 193-289 42-141 (181)
62 PF05891 Methyltransf_PK: AdoM 99.4 1.8E-12 3.9E-17 108.5 9.1 137 193-344 55-201 (218)
63 PRK00107 gidB 16S rRNA methylt 99.4 3.5E-11 7.6E-16 100.9 16.2 117 193-345 45-170 (187)
64 PLN03075 nicotianamine synthas 99.4 3.7E-12 7.9E-17 112.9 10.6 99 191-290 121-233 (296)
65 PF05401 NodS: Nodulation prot 99.4 2.5E-12 5.4E-17 105.9 7.8 135 187-345 38-180 (201)
66 TIGR03840 TMPT_Se_Te thiopurin 99.3 4.5E-11 9.8E-16 102.5 15.9 132 192-344 33-187 (213)
67 PRK15001 SAM-dependent 23S rib 99.3 1.8E-11 3.9E-16 113.1 11.6 107 183-290 219-340 (378)
68 TIGR01983 UbiG ubiquinone bios 99.3 1.8E-11 3.9E-16 106.6 10.1 142 193-344 45-203 (224)
69 TIGR03534 RF_mod_PrmC protein- 99.3 5.9E-11 1.3E-15 105.1 13.5 134 182-347 78-244 (251)
70 TIGR02081 metW methionine bios 99.3 5.4E-11 1.2E-15 101.1 12.4 140 193-345 13-168 (194)
71 TIGR02469 CbiT precorrin-6Y C5 99.3 5E-11 1.1E-15 93.5 11.0 100 184-289 11-121 (124)
72 PF03848 TehB: Tellurite resis 99.3 2.1E-11 4.5E-16 101.7 9.0 108 183-293 21-136 (192)
73 PRK13255 thiopurine S-methyltr 99.2 3.4E-10 7.4E-15 97.5 15.6 133 191-344 35-190 (218)
74 PF05175 MTS: Methyltransferas 99.2 3.7E-11 8.1E-16 99.8 9.0 98 193-290 31-140 (170)
75 PRK09489 rsmC 16S ribosomal RN 99.2 8.5E-11 1.8E-15 107.9 12.0 108 183-291 187-304 (342)
76 PRK00121 trmB tRNA (guanine-N( 99.2 3.3E-11 7.1E-16 103.0 8.3 98 193-290 40-156 (202)
77 PLN02232 ubiquinone biosynthes 99.2 5.4E-11 1.2E-15 97.7 9.1 126 221-348 1-151 (160)
78 PTZ00146 fibrillarin; Provisio 99.2 9E-10 2E-14 97.4 16.2 132 191-346 130-273 (293)
79 PF07021 MetW: Methionine bios 99.2 3.7E-10 8E-15 93.0 12.7 143 192-347 12-170 (193)
80 PF05148 Methyltransf_8: Hypot 99.2 4.8E-10 1E-14 93.1 13.0 158 158-356 33-197 (219)
81 PRK09328 N5-glutamine S-adenos 99.2 5.8E-10 1.3E-14 100.2 14.8 135 191-355 106-274 (275)
82 PRK11188 rrmJ 23S rRNA methylt 99.2 5.7E-10 1.2E-14 95.7 13.8 106 182-291 40-166 (209)
83 PRK11088 rrmA 23S rRNA methylt 99.2 2E-10 4.3E-15 102.9 10.6 91 193-292 85-183 (272)
84 PRK13944 protein-L-isoaspartat 99.2 2.6E-10 5.5E-15 97.7 10.7 100 181-289 61-172 (205)
85 PRK14968 putative methyltransf 99.1 2E-09 4.4E-14 90.9 15.4 123 192-345 22-174 (188)
86 TIGR00536 hemK_fam HemK family 99.1 1.7E-09 3.6E-14 97.5 15.1 94 195-288 116-242 (284)
87 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.2E-10 2.6E-15 98.9 7.2 97 193-290 16-132 (194)
88 PRK13942 protein-L-isoaspartat 99.1 4.9E-10 1.1E-14 96.4 11.0 101 181-290 65-176 (212)
89 PF12147 Methyltransf_20: Puta 99.1 4.1E-09 8.9E-14 91.7 16.3 156 191-356 133-311 (311)
90 COG4123 Predicted O-methyltran 99.1 1.2E-09 2.5E-14 94.3 12.7 136 191-356 42-212 (248)
91 PRK00517 prmA ribosomal protei 99.1 8.7E-10 1.9E-14 97.5 12.4 115 192-346 118-240 (250)
92 COG2242 CobL Precorrin-6B meth 99.1 9.2E-10 2E-14 90.0 10.4 99 185-290 27-135 (187)
93 PHA03411 putative methyltransf 99.1 1.4E-09 3E-14 95.2 12.1 124 193-339 64-209 (279)
94 TIGR00080 pimt protein-L-isoas 99.1 9.1E-10 2E-14 95.1 10.9 100 181-289 66-176 (215)
95 PRK14966 unknown domain/N5-glu 99.1 3.3E-09 7.2E-14 98.3 14.5 126 193-348 251-409 (423)
96 TIGR03533 L3_gln_methyl protei 99.0 1.8E-09 3.8E-14 97.1 11.4 96 193-288 121-249 (284)
97 PRK07402 precorrin-6B methylas 99.0 3E-09 6.5E-14 90.6 11.1 101 184-291 32-143 (196)
98 KOG3045 Predicted RNA methylas 99.0 9.5E-09 2.1E-13 87.3 13.7 158 156-356 139-303 (325)
99 COG2813 RsmC 16S RNA G1207 met 99.0 3.8E-09 8.3E-14 93.0 11.7 109 182-291 148-267 (300)
100 PRK00377 cbiT cobalt-precorrin 99.0 5E-09 1.1E-13 89.3 12.3 97 186-288 34-143 (198)
101 PRK14121 tRNA (guanine-N(7)-)- 99.0 2.5E-09 5.5E-14 98.5 10.7 106 183-290 113-235 (390)
102 PRK14967 putative methyltransf 99.0 1.2E-08 2.6E-13 88.6 14.4 102 191-293 34-162 (223)
103 PRK11805 N5-glutamine S-adenos 99.0 3.3E-09 7.2E-14 96.2 11.2 95 194-288 134-261 (307)
104 PRK01544 bifunctional N5-gluta 99.0 7.5E-09 1.6E-13 100.2 13.3 126 193-348 138-297 (506)
105 TIGR00406 prmA ribosomal prote 99.0 5.1E-09 1.1E-13 94.4 11.3 93 193-291 159-260 (288)
106 PRK04457 spermidine synthase; 99.0 1.8E-09 3.9E-14 95.8 8.0 97 192-289 65-176 (262)
107 TIGR00438 rrmJ cell division p 99.0 4.9E-09 1.1E-13 88.6 10.2 102 184-289 23-145 (188)
108 TIGR03704 PrmC_rel_meth putati 99.0 2.5E-08 5.5E-13 88.0 14.8 125 193-347 86-243 (251)
109 cd02440 AdoMet_MTases S-adenos 98.9 6.4E-09 1.4E-13 78.0 9.4 92 196-289 1-103 (107)
110 KOG1271 Methyltransferases [Ge 98.9 7.3E-09 1.6E-13 83.5 9.3 122 195-346 69-207 (227)
111 PRK13256 thiopurine S-methyltr 98.9 2.8E-08 6E-13 85.4 13.5 101 191-293 41-166 (226)
112 TIGR01177 conserved hypothetic 98.9 1.3E-08 2.8E-13 93.7 12.1 130 181-346 171-317 (329)
113 PRK00312 pcm protein-L-isoaspa 98.9 1.1E-08 2.3E-13 88.3 10.7 99 182-291 68-176 (212)
114 PF13659 Methyltransf_26: Meth 98.9 2.2E-09 4.8E-14 83.3 4.8 95 195-290 2-115 (117)
115 PF01739 CheR: CheR methyltran 98.9 7.1E-09 1.5E-13 87.4 8.2 98 192-289 30-174 (196)
116 KOG2899 Predicted methyltransf 98.9 9.7E-09 2.1E-13 86.5 8.8 98 191-288 56-207 (288)
117 PF05219 DREV: DREV methyltran 98.9 2.3E-08 5.1E-13 86.0 11.3 141 193-346 94-242 (265)
118 PF04672 Methyltransf_19: S-ad 98.9 1.4E-08 3.1E-13 88.3 10.1 155 179-341 54-233 (267)
119 PRK10611 chemotaxis methyltran 98.9 1.3E-07 2.9E-12 84.2 16.3 97 193-289 115-261 (287)
120 COG2518 Pcm Protein-L-isoaspar 98.9 2.6E-08 5.5E-13 83.5 10.5 101 180-291 60-170 (209)
121 PF05724 TPMT: Thiopurine S-me 98.8 4.3E-08 9.2E-13 84.3 12.0 139 182-344 27-190 (218)
122 COG2264 PrmA Ribosomal protein 98.8 4.2E-08 9E-13 87.0 12.0 139 169-345 141-289 (300)
123 PRK00811 spermidine synthase; 98.8 1.3E-08 2.8E-13 91.5 8.8 98 192-289 75-190 (283)
124 PF08100 Dimerisation: Dimeris 98.8 1.1E-08 2.3E-13 65.7 5.2 51 28-82 1-51 (51)
125 COG2890 HemK Methylase of poly 98.8 1.5E-07 3.2E-12 84.2 14.4 122 196-347 113-266 (280)
126 COG1352 CheR Methylase of chem 98.8 3.9E-07 8.4E-12 80.3 16.4 97 193-289 96-240 (268)
127 PRK13943 protein-L-isoaspartat 98.8 3.7E-08 8E-13 89.5 9.5 100 182-290 70-180 (322)
128 COG4976 Predicted methyltransf 98.8 2.1E-08 4.6E-13 83.8 6.9 146 181-346 114-267 (287)
129 PF01135 PCMT: Protein-L-isoas 98.7 1.5E-08 3.2E-13 86.5 5.6 102 180-290 60-172 (209)
130 PRK01581 speE spermidine synth 98.7 8.8E-08 1.9E-12 87.2 10.5 98 192-289 149-267 (374)
131 KOG3010 Methyltransferase [Gen 98.7 6.6E-08 1.4E-12 81.7 8.9 95 194-293 34-139 (261)
132 PLN02366 spermidine synthase 98.7 1.1E-07 2.3E-12 86.1 10.8 97 192-289 90-205 (308)
133 PF06325 PrmA: Ribosomal prote 98.7 7.1E-08 1.5E-12 86.3 9.6 144 169-355 140-293 (295)
134 COG2519 GCD14 tRNA(1-methylade 98.7 1.1E-07 2.3E-12 81.5 10.0 106 181-294 83-199 (256)
135 TIGR00417 speE spermidine synt 98.7 7.2E-08 1.6E-12 86.2 8.3 98 192-289 71-185 (270)
136 PLN02781 Probable caffeoyl-CoA 98.7 3E-07 6.4E-12 80.3 11.5 98 191-293 66-181 (234)
137 smart00650 rADc Ribosomal RNA 98.6 1.1E-07 2.4E-12 78.9 8.1 102 182-289 3-112 (169)
138 PRK10901 16S rRNA methyltransf 98.6 2.7E-07 5.9E-12 87.9 11.4 111 182-293 234-375 (427)
139 TIGR00563 rsmB ribosomal RNA s 98.6 2.1E-07 4.5E-12 88.8 9.9 112 182-294 228-372 (426)
140 PF03291 Pox_MCEL: mRNA cappin 98.6 1.9E-07 4.1E-12 85.3 8.7 98 193-291 62-187 (331)
141 PRK14904 16S rRNA methyltransf 98.6 5.3E-07 1.1E-11 86.4 11.1 104 191-294 248-381 (445)
142 PLN02672 methionine S-methyltr 98.5 7.5E-07 1.6E-11 92.1 12.6 122 194-345 119-304 (1082)
143 PRK03612 spermidine synthase; 98.5 3E-07 6.5E-12 89.6 9.4 97 192-289 296-414 (521)
144 PRK14902 16S rRNA methyltransf 98.5 4.8E-07 1.1E-11 86.8 10.6 109 184-293 242-382 (444)
145 PF11968 DUF3321: Putative met 98.5 1.1E-06 2.3E-11 73.8 11.0 120 194-346 52-183 (219)
146 PRK14901 16S rRNA methyltransf 98.5 6.7E-07 1.5E-11 85.5 10.9 109 184-293 244-387 (434)
147 KOG1541 Predicted protein carb 98.5 4.7E-07 1E-11 75.4 8.4 103 183-288 39-158 (270)
148 PHA03412 putative methyltransf 98.5 5.7E-07 1.2E-11 77.1 9.2 94 194-288 50-160 (241)
149 PF02390 Methyltransf_4: Putat 98.5 1.8E-07 4E-12 79.1 5.9 91 195-290 19-133 (195)
150 PF08123 DOT1: Histone methyla 98.5 5.3E-07 1.1E-11 76.6 8.1 112 181-296 31-164 (205)
151 PRK14903 16S rRNA methyltransf 98.4 1.6E-06 3.4E-11 82.6 10.7 104 191-294 235-370 (431)
152 KOG1975 mRNA cap methyltransfe 98.4 9.5E-07 2.1E-11 77.8 8.2 103 183-288 109-235 (389)
153 TIGR00446 nop2p NOL1/NOP2/sun 98.4 1.9E-06 4E-11 76.8 10.4 104 191-294 69-203 (264)
154 COG4122 Predicted O-methyltran 98.4 1.3E-06 2.7E-11 74.5 7.6 100 191-295 57-171 (219)
155 COG3963 Phospholipid N-methylt 98.4 4.8E-06 1E-10 66.5 10.0 112 180-292 36-158 (194)
156 PLN02476 O-methyltransferase 98.4 2.5E-06 5.3E-11 75.7 9.4 98 191-293 116-231 (278)
157 PRK11727 23S rRNA mA1618 methy 98.3 4.1E-06 8.9E-11 76.0 10.7 145 193-346 114-294 (321)
158 PRK13168 rumA 23S rRNA m(5)U19 98.3 3.9E-06 8.5E-11 80.5 11.2 100 180-288 285-398 (443)
159 PF08704 GCD14: tRNA methyltra 98.3 2E-06 4.3E-11 75.0 8.2 105 181-293 29-149 (247)
160 TIGR00755 ksgA dimethyladenosi 98.3 3E-06 6.5E-11 75.1 9.1 92 180-278 17-116 (253)
161 PF01596 Methyltransf_3: O-met 98.3 3.9E-07 8.5E-12 77.5 3.2 97 192-293 44-158 (205)
162 PRK14896 ksgA 16S ribosomal RN 98.3 4.1E-06 9E-11 74.4 9.3 82 180-265 17-104 (258)
163 PF10294 Methyltransf_16: Puta 98.3 2.5E-06 5.3E-11 71.0 7.1 101 191-293 43-159 (173)
164 COG0220 Predicted S-adenosylme 98.3 2.1E-06 4.5E-11 74.0 6.6 95 195-290 50-164 (227)
165 PF05185 PRMT5: PRMT5 arginine 98.2 2.1E-06 4.5E-11 81.6 6.8 126 155-287 152-294 (448)
166 COG0421 SpeE Spermidine syntha 98.2 3.7E-06 8E-11 74.8 7.8 97 193-289 76-189 (282)
167 PF09243 Rsm22: Mitochondrial 98.2 1.2E-05 2.5E-10 72.0 10.7 113 181-296 22-145 (274)
168 PRK00274 ksgA 16S ribosomal RN 98.2 4.6E-06 1E-10 74.6 8.1 81 181-265 31-118 (272)
169 PLN02823 spermine synthase 98.2 6.1E-06 1.3E-10 75.5 8.3 96 193-289 103-219 (336)
170 KOG1500 Protein arginine N-met 98.2 9.7E-06 2.1E-10 71.8 9.0 95 193-288 177-280 (517)
171 PRK10909 rsmD 16S rRNA m(2)G96 98.2 1E-05 2.3E-10 68.5 8.5 94 193-290 53-159 (199)
172 KOG1661 Protein-L-isoaspartate 98.1 7.5E-06 1.6E-10 67.9 6.9 90 191-288 80-191 (237)
173 TIGR03439 methyl_EasF probable 98.1 1.9E-05 4E-10 71.7 10.1 104 182-288 68-195 (319)
174 KOG2940 Predicted methyltransf 98.1 6.8E-06 1.5E-10 69.0 6.6 142 192-343 71-226 (325)
175 PLN02589 caffeoyl-CoA O-methyl 98.1 8.5E-06 1.8E-10 71.3 7.5 98 191-293 77-193 (247)
176 PRK11783 rlmL 23S rRNA m(2)G24 98.1 1.3E-05 2.9E-10 81.0 9.4 96 193-289 538-655 (702)
177 TIGR00478 tly hemolysin TlyA f 98.1 8.1E-05 1.8E-09 64.4 12.4 145 181-346 63-219 (228)
178 PF07942 N2227: N2227-like pro 98.1 8.8E-05 1.9E-09 65.4 12.5 134 193-344 56-242 (270)
179 PTZ00338 dimethyladenosine tra 98.0 2.3E-05 4.9E-10 70.7 8.9 90 180-273 24-122 (294)
180 PRK15128 23S rRNA m(5)C1962 me 98.0 3.1E-05 6.8E-10 72.7 10.1 98 193-291 220-340 (396)
181 PRK00536 speE spermidine synth 98.0 1.8E-05 3.9E-10 69.6 7.9 89 192-290 71-171 (262)
182 KOG1331 Predicted methyltransf 98.0 9.8E-06 2.1E-10 70.6 6.0 95 193-291 45-144 (293)
183 TIGR00479 rumA 23S rRNA (uraci 98.0 2.9E-05 6.3E-10 74.3 8.9 99 181-288 281-394 (431)
184 PRK01544 bifunctional N5-gluta 97.9 1.6E-05 3.4E-10 77.3 6.3 97 193-290 347-462 (506)
185 KOG1499 Protein arginine N-met 97.9 2E-05 4.3E-10 70.8 6.3 95 192-287 59-164 (346)
186 KOG3191 Predicted N6-DNA-methy 97.9 0.00033 7.1E-09 57.0 12.6 133 194-355 44-207 (209)
187 PRK04148 hypothetical protein; 97.9 0.00024 5.1E-09 55.7 11.4 99 184-293 8-112 (134)
188 PRK03522 rumB 23S rRNA methylu 97.9 2.8E-05 6.1E-10 71.2 7.2 64 193-258 173-247 (315)
189 COG2521 Predicted archaeal met 97.9 0.00014 3E-09 61.5 10.6 130 191-347 132-280 (287)
190 PF01564 Spermine_synth: Sperm 97.9 1.2E-05 2.6E-10 70.6 4.6 99 192-290 75-191 (246)
191 COG0030 KsgA Dimethyladenosine 97.9 0.00013 2.8E-09 63.8 10.2 96 179-275 17-118 (259)
192 PF02527 GidB: rRNA small subu 97.8 3.4E-05 7.3E-10 64.4 5.6 89 196-290 51-148 (184)
193 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 2E-05 4.3E-10 69.0 4.3 91 240-344 138-239 (256)
194 PF03141 Methyltransf_29: Puta 97.8 1.6E-05 3.5E-10 74.6 3.9 98 193-294 117-223 (506)
195 COG2263 Predicted RNA methylas 97.7 0.00012 2.6E-09 60.1 7.0 116 193-342 45-166 (198)
196 KOG2904 Predicted methyltransf 97.7 0.00013 2.8E-09 63.2 7.2 96 193-288 148-283 (328)
197 COG0293 FtsJ 23S rRNA methylas 97.7 0.00067 1.4E-08 57.1 10.9 112 177-292 29-161 (205)
198 KOG0820 Ribosomal RNA adenine 97.7 0.00013 2.8E-09 63.1 6.6 76 180-258 46-130 (315)
199 PRK11760 putative 23S rRNA C24 97.6 0.0016 3.5E-08 59.0 13.7 97 191-295 209-309 (357)
200 COG0357 GidB Predicted S-adeno 97.6 0.00019 4.1E-09 61.1 7.0 120 194-346 68-197 (215)
201 TIGR02085 meth_trns_rumB 23S r 97.6 0.00018 3.9E-09 67.5 7.6 89 193-288 233-332 (374)
202 KOG2798 Putative trehalase [Ca 97.6 0.0013 2.8E-08 58.2 11.9 135 194-343 151-336 (369)
203 PF04816 DUF633: Family of unk 97.6 0.00036 7.7E-09 59.4 8.3 113 197-344 1-124 (205)
204 COG5459 Predicted rRNA methyla 97.6 7.9E-05 1.7E-09 66.6 4.1 112 183-295 104-230 (484)
205 TIGR00095 RNA methyltransferas 97.6 0.00058 1.3E-08 57.6 9.2 94 193-291 49-159 (189)
206 PRK00050 16S rRNA m(4)C1402 me 97.6 0.00018 3.9E-09 64.6 6.4 66 181-247 8-79 (296)
207 PF01728 FtsJ: FtsJ-like methy 97.5 0.00014 3E-09 60.9 5.0 106 181-290 9-139 (181)
208 KOG3987 Uncharacterized conser 97.5 5.4E-05 1.2E-09 62.7 2.0 139 193-346 112-262 (288)
209 COG4798 Predicted methyltransf 97.5 0.0012 2.7E-08 54.3 9.7 138 190-342 45-203 (238)
210 PF13679 Methyltransf_32: Meth 97.3 0.0012 2.7E-08 52.8 8.3 92 191-289 23-130 (141)
211 TIGR00027 mthyl_TIGR00027 meth 97.3 0.0045 9.8E-08 54.9 12.1 147 192-342 80-248 (260)
212 COG4076 Predicted RNA methylas 97.3 0.0004 8.6E-09 56.8 4.7 97 195-293 34-138 (252)
213 COG4627 Uncharacterized protei 97.3 0.0004 8.7E-09 54.9 4.6 79 197-291 6-87 (185)
214 KOG3115 Methyltransferase-like 97.3 0.00036 7.8E-09 57.8 4.5 99 194-292 61-185 (249)
215 KOG1709 Guanidinoacetate methy 97.3 0.0037 8.1E-08 52.4 10.4 102 192-295 100-211 (271)
216 PRK04338 N(2),N(2)-dimethylgua 97.2 0.00088 1.9E-08 62.7 7.3 90 194-289 58-157 (382)
217 KOG1269 SAM-dependent methyltr 97.2 0.00042 9.2E-09 64.0 4.9 101 193-296 110-221 (364)
218 PF00398 RrnaAD: Ribosomal RNA 97.2 0.0019 4E-08 57.6 8.7 98 178-282 16-123 (262)
219 COG2384 Predicted SAM-dependen 97.2 0.012 2.6E-07 49.8 12.3 116 193-343 16-142 (226)
220 COG4262 Predicted spermidine s 97.1 0.0022 4.7E-08 58.0 8.1 94 192-291 288-408 (508)
221 PRK11933 yebU rRNA (cytosine-C 97.1 0.0045 9.7E-08 59.5 10.6 102 191-292 111-244 (470)
222 COG0500 SmtA SAM-dependent met 97.1 0.0053 1.2E-07 49.4 9.6 95 197-295 52-160 (257)
223 PF09339 HTH_IclR: IclR helix- 97.0 0.00036 7.8E-09 45.4 1.7 45 36-89 6-50 (52)
224 smart00550 Zalpha Z-DNA-bindin 96.9 0.0021 4.6E-08 44.3 4.8 60 33-102 6-66 (68)
225 PF02475 Met_10: Met-10+ like- 96.9 0.00055 1.2E-08 57.9 2.2 90 191-286 99-198 (200)
226 PF01170 UPF0020: Putative RNA 96.9 0.0022 4.8E-08 53.5 5.6 101 181-282 17-143 (179)
227 KOG3201 Uncharacterized conser 96.8 0.00068 1.5E-08 54.1 2.0 97 193-291 29-141 (201)
228 COG1189 Predicted rRNA methyla 96.8 0.029 6.4E-07 48.1 11.7 151 181-346 67-226 (245)
229 PF01269 Fibrillarin: Fibrilla 96.7 0.0059 1.3E-07 51.9 7.2 140 191-354 71-225 (229)
230 PF04989 CmcI: Cephalosporin h 96.7 0.0093 2E-07 50.4 8.4 99 193-293 32-150 (206)
231 smart00346 HTH_ICLR helix_turn 96.7 0.0028 6.2E-08 46.4 4.8 58 36-104 8-65 (91)
232 PLN02668 indole-3-acetate carb 96.7 0.089 1.9E-06 49.1 15.5 102 193-294 63-241 (386)
233 KOG1663 O-methyltransferase [S 96.7 0.013 2.9E-07 49.8 9.1 100 191-295 71-188 (237)
234 PRK10141 DNA-binding transcrip 96.7 0.0034 7.3E-08 48.2 4.8 67 26-102 9-75 (117)
235 KOG4589 Cell division protein 96.6 0.016 3.5E-07 47.6 8.6 104 183-291 59-185 (232)
236 KOG3420 Predicted RNA methylas 96.6 0.0054 1.2E-07 48.1 5.4 67 193-261 48-124 (185)
237 COG3897 Predicted methyltransf 96.5 0.024 5.3E-07 47.0 8.9 104 188-295 74-184 (218)
238 PF13601 HTH_34: Winged helix 96.5 0.0044 9.5E-08 44.2 4.0 62 34-105 1-66 (80)
239 COG3315 O-Methyltransferase in 96.4 0.02 4.4E-07 51.7 9.1 146 193-342 92-262 (297)
240 PF01022 HTH_5: Bacterial regu 96.4 0.0027 5.9E-08 40.2 2.5 43 35-88 4-46 (47)
241 PF13463 HTH_27: Winged helix 96.4 0.0063 1.4E-07 41.8 4.6 49 49-104 17-68 (68)
242 TIGR02143 trmA_only tRNA (urac 96.4 0.0052 1.1E-07 57.1 5.2 51 195-247 199-256 (353)
243 PF03059 NAS: Nicotianamine sy 96.4 0.013 2.7E-07 52.1 7.3 96 193-289 120-229 (276)
244 PF14947 HTH_45: Winged helix- 96.3 0.0065 1.4E-07 43.0 4.2 49 49-108 18-66 (77)
245 COG4301 Uncharacterized conser 96.3 0.032 7E-07 48.0 8.9 96 193-288 78-191 (321)
246 PF02384 N6_Mtase: N-6 DNA Met 96.3 0.01 2.2E-07 54.2 6.4 100 191-290 44-183 (311)
247 PHA00738 putative HTH transcri 96.2 0.0087 1.9E-07 44.5 4.6 60 34-103 13-72 (108)
248 KOG2918 Carboxymethyl transfer 96.2 0.088 1.9E-06 46.9 11.5 147 191-345 85-278 (335)
249 PF02082 Rrf2: Transcriptional 96.2 0.0071 1.5E-07 43.5 4.1 47 49-103 24-70 (83)
250 PF12840 HTH_20: Helix-turn-he 96.2 0.0046 1E-07 41.6 2.9 53 28-90 5-57 (61)
251 PF01978 TrmB: Sugar-specific 96.2 0.0043 9.4E-08 42.7 2.7 57 34-101 9-65 (68)
252 PF07091 FmrO: Ribosomal RNA m 96.1 0.0034 7.3E-08 54.4 2.3 99 192-292 104-210 (251)
253 PRK05031 tRNA (uracil-5-)-meth 96.1 0.006 1.3E-07 56.9 4.2 51 195-247 208-265 (362)
254 COG1414 IclR Transcriptional r 96.1 0.0096 2.1E-07 52.4 5.2 58 36-104 7-64 (246)
255 PF13578 Methyltransf_24: Meth 96.1 0.0015 3.3E-08 49.3 0.1 90 198-290 1-105 (106)
256 COG1889 NOP1 Fibrillarin-like 96.1 0.045 9.7E-07 45.7 8.4 132 191-346 74-216 (231)
257 PRK11050 manganese transport r 96.0 0.062 1.4E-06 43.5 9.3 87 4-108 13-99 (152)
258 TIGR01444 fkbM_fam methyltrans 96.0 0.008 1.7E-07 48.0 4.0 52 196-247 1-59 (143)
259 PF03492 Methyltransf_7: SAM d 96.0 0.089 1.9E-06 48.5 11.1 105 191-295 14-188 (334)
260 TIGR02987 met_A_Alw26 type II 96.0 0.027 5.9E-07 55.4 8.2 66 193-258 31-119 (524)
261 PF09445 Methyltransf_15: RNA 95.9 0.003 6.5E-08 51.5 1.1 61 196-258 2-76 (163)
262 PRK11783 rlmL 23S rRNA m(2)G24 95.9 0.057 1.2E-06 55.0 10.4 114 177-291 174-348 (702)
263 PF11312 DUF3115: Protein of u 95.9 0.012 2.7E-07 52.5 4.7 98 194-291 87-243 (315)
264 PF13412 HTH_24: Winged helix- 95.8 0.013 2.7E-07 37.2 3.5 44 35-88 5-48 (48)
265 cd00092 HTH_CRP helix_turn_hel 95.7 0.042 9E-07 37.4 5.9 44 49-102 24-67 (67)
266 COG1041 Predicted DNA modifica 95.7 0.19 4.2E-06 45.8 11.6 102 188-291 192-311 (347)
267 COG2520 Predicted methyltransf 95.6 0.096 2.1E-06 48.0 9.6 96 193-295 188-294 (341)
268 COG2345 Predicted transcriptio 95.6 0.031 6.7E-07 47.6 6.0 60 37-106 15-79 (218)
269 COG1092 Predicted SAM-dependen 95.6 0.064 1.4E-06 50.2 8.6 99 193-293 217-339 (393)
270 PRK11569 transcriptional repre 95.6 0.019 4.1E-07 51.5 5.0 58 36-104 31-88 (274)
271 PRK15090 DNA-binding transcrip 95.6 0.018 3.9E-07 51.1 4.8 58 36-105 17-74 (257)
272 COG1959 Predicted transcriptio 95.6 0.021 4.6E-07 46.1 4.7 48 49-104 24-71 (150)
273 PF01638 HxlR: HxlR-like helix 95.5 0.032 6.9E-07 40.8 5.2 60 38-108 10-73 (90)
274 PRK09834 DNA-binding transcrip 95.5 0.022 4.9E-07 50.7 5.2 63 35-108 13-75 (263)
275 TIGR02431 pcaR_pcaU beta-ketoa 95.5 0.021 4.5E-07 50.4 4.8 57 36-105 12-68 (248)
276 KOG0822 Protein kinase inhibit 95.5 0.059 1.3E-06 51.4 7.7 127 156-289 335-477 (649)
277 TIGR00006 S-adenosyl-methyltra 95.4 0.039 8.5E-07 49.8 6.4 66 181-247 9-80 (305)
278 PRK10163 DNA-binding transcrip 95.4 0.024 5.3E-07 50.7 5.1 58 36-104 28-85 (271)
279 TIGR00308 TRM1 tRNA(guanine-26 95.4 0.043 9.4E-07 51.2 6.8 90 195-290 46-147 (374)
280 PRK11512 DNA-binding transcrip 95.4 0.14 3.1E-06 40.9 9.1 62 37-108 44-108 (144)
281 COG3355 Predicted transcriptio 95.3 0.034 7.5E-07 42.8 4.8 48 35-92 29-77 (126)
282 PF04072 LCM: Leucine carboxyl 95.3 0.095 2.1E-06 43.9 7.9 84 193-276 78-182 (183)
283 TIGR02337 HpaR homoprotocatech 95.3 0.036 7.9E-07 42.7 5.0 65 34-108 29-96 (118)
284 PF01047 MarR: MarR family; I 95.2 0.019 4E-07 38.2 2.7 47 36-92 6-52 (59)
285 PF12802 MarR_2: MarR family; 95.1 0.03 6.6E-07 37.5 3.6 49 35-91 7-55 (62)
286 PF03602 Cons_hypoth95: Conser 95.1 0.022 4.8E-07 47.6 3.4 96 193-292 42-154 (183)
287 smart00418 HTH_ARSR helix_turn 95.1 0.055 1.2E-06 36.2 4.9 47 49-102 9-55 (66)
288 PF01795 Methyltransf_5: MraW 95.0 0.05 1.1E-06 49.1 5.7 65 181-246 9-79 (310)
289 PF09012 FeoC: FeoC like trans 95.0 0.033 7.1E-07 38.4 3.6 43 38-90 5-47 (69)
290 smart00419 HTH_CRP helix_turn_ 95.0 0.041 8.9E-07 34.6 3.8 40 50-100 8-47 (48)
291 KOG2915 tRNA(1-methyladenosine 95.0 0.14 3E-06 44.9 8.0 76 181-257 94-183 (314)
292 KOG2793 Putative N2,N2-dimethy 95.0 0.15 3.2E-06 44.6 8.2 100 191-293 83-202 (248)
293 TIGR02010 IscR iron-sulfur clu 95.0 0.048 1E-06 43.2 4.9 46 49-102 24-69 (135)
294 PRK03902 manganese transport t 94.9 0.058 1.3E-06 43.1 5.4 50 49-108 21-70 (142)
295 COG2265 TrmA SAM-dependent met 94.9 0.074 1.6E-06 50.7 6.9 101 179-288 280-394 (432)
296 TIGR02702 SufR_cyano iron-sulf 94.9 0.054 1.2E-06 46.2 5.5 63 36-108 4-71 (203)
297 PF10672 Methyltrans_SAM: S-ad 94.8 0.035 7.7E-07 49.7 4.2 98 193-291 123-239 (286)
298 PF07757 AdoMet_MTase: Predict 94.8 0.05 1.1E-06 40.5 4.1 31 192-224 57-87 (112)
299 PRK06266 transcription initiat 94.7 0.14 3.1E-06 42.5 7.2 46 36-91 25-70 (178)
300 COG4742 Predicted transcriptio 94.6 0.06 1.3E-06 47.1 5.0 67 29-110 9-75 (260)
301 TIGR00738 rrf2_super rrf2 fami 94.6 0.054 1.2E-06 42.6 4.4 47 49-103 24-70 (132)
302 cd00090 HTH_ARSR Arsenical Res 94.6 0.092 2E-06 36.3 5.2 55 37-102 11-65 (78)
303 PRK10857 DNA-binding transcrip 94.6 0.054 1.2E-06 44.4 4.4 46 49-102 24-69 (164)
304 KOG3924 Putative protein methy 94.6 0.09 1.9E-06 48.4 6.1 110 181-294 181-312 (419)
305 PF04967 HTH_10: HTH DNA bindi 94.5 0.069 1.5E-06 34.5 3.9 40 27-79 6-45 (53)
306 PF07381 DUF1495: Winged helix 94.4 0.098 2.1E-06 37.9 4.9 69 32-108 8-87 (90)
307 PF04703 FaeA: FaeA-like prote 94.2 0.062 1.4E-06 36.0 3.3 44 37-90 4-48 (62)
308 PF03514 GRAS: GRAS domain fam 94.2 0.3 6.5E-06 45.8 9.1 110 182-294 100-247 (374)
309 PF03141 Methyltransf_29: Puta 94.1 0.19 4.2E-06 47.9 7.4 99 191-291 363-468 (506)
310 PRK11920 rirA iron-responsive 93.9 0.089 1.9E-06 42.6 4.3 47 49-103 23-69 (153)
311 smart00347 HTH_MARR helix_turn 93.9 0.13 2.8E-06 37.9 4.9 64 35-108 12-78 (101)
312 PRK11014 transcriptional repre 93.8 0.12 2.6E-06 41.2 4.8 46 49-102 24-69 (141)
313 TIGR01884 cas_HTH CRISPR locus 93.6 0.11 2.3E-06 44.4 4.5 60 34-104 144-203 (203)
314 KOG1099 SAM-dependent methyltr 93.5 0.18 3.9E-06 43.0 5.5 94 191-288 39-161 (294)
315 PF08461 HTH_12: Ribonuclease 93.5 0.18 3.8E-06 34.4 4.6 61 38-105 3-63 (66)
316 TIGR02944 suf_reg_Xantho FeS a 93.4 0.098 2.1E-06 41.1 3.7 45 49-101 24-68 (130)
317 COG0144 Sun tRNA and rRNA cyto 93.4 1.1 2.3E-05 41.8 11.0 104 191-294 154-292 (355)
318 PF08220 HTH_DeoR: DeoR-like h 93.3 0.16 3.4E-06 33.5 4.0 42 38-89 5-46 (57)
319 KOG2352 Predicted spermine/spe 93.3 0.47 1E-05 45.1 8.5 100 195-296 50-169 (482)
320 COG1321 TroR Mn-dependent tran 93.2 0.19 4.1E-06 40.7 5.1 51 49-109 23-73 (154)
321 KOG2187 tRNA uracil-5-methyltr 93.2 0.13 2.8E-06 49.0 4.6 54 190-245 380-440 (534)
322 KOG1562 Spermidine synthase [A 93.0 0.23 5E-06 44.1 5.6 99 191-290 119-236 (337)
323 TIGR01889 Staph_reg_Sar staphy 92.9 0.24 5.2E-06 37.5 5.1 66 34-107 26-96 (109)
324 PF06859 Bin3: Bicoid-interact 92.9 0.039 8.5E-07 41.4 0.6 84 253-345 3-93 (110)
325 PRK14165 winged helix-turn-hel 92.8 0.22 4.7E-06 42.7 5.1 53 49-108 20-72 (217)
326 PF06163 DUF977: Bacterial pro 92.8 0.26 5.7E-06 37.7 4.9 56 31-99 10-66 (127)
327 PRK03573 transcriptional regul 92.8 1.2 2.6E-05 35.5 9.3 62 38-108 36-100 (144)
328 PF01325 Fe_dep_repress: Iron 92.7 0.16 3.5E-06 33.9 3.4 35 49-90 21-55 (60)
329 PF05958 tRNA_U5-meth_tr: tRNA 92.6 0.14 3E-06 47.7 4.1 64 178-245 183-253 (352)
330 TIGR00373 conserved hypothetic 92.6 0.21 4.6E-06 40.6 4.6 46 36-91 17-62 (158)
331 COG0275 Predicted S-adenosylme 92.5 0.32 6.9E-06 43.4 5.9 66 180-246 11-83 (314)
332 smart00420 HTH_DEOR helix_turn 92.5 0.27 5.9E-06 31.3 4.3 42 38-89 5-46 (53)
333 COG1064 AdhP Zn-dependent alco 92.3 1.2 2.7E-05 40.8 9.6 93 191-293 164-262 (339)
334 COG0742 N6-adenine-specific me 92.2 0.63 1.4E-05 38.8 6.9 95 193-289 43-153 (187)
335 PHA02943 hypothetical protein; 92.1 0.33 7.2E-06 38.4 4.9 44 37-91 15-58 (165)
336 KOG4058 Uncharacterized conser 92.1 0.58 1.2E-05 37.1 6.2 106 182-295 62-177 (199)
337 TIGR00122 birA_repr_reg BirA b 92.1 0.27 5.9E-06 33.7 4.1 53 36-102 3-55 (69)
338 COG3510 CmcI Cephalosporin hyd 92.0 0.81 1.8E-05 38.0 7.2 103 193-297 69-187 (237)
339 COG0116 Predicted N6-adenine-s 91.9 0.44 9.6E-06 44.2 6.3 111 178-289 177-343 (381)
340 COG4189 Predicted transcriptio 91.7 0.35 7.6E-06 41.2 4.9 55 26-90 16-70 (308)
341 KOG2730 Methylase [General fun 91.7 0.19 4E-06 42.7 3.3 90 193-284 94-196 (263)
342 smart00344 HTH_ASNC helix_turn 91.7 0.27 5.9E-06 37.0 4.0 45 34-88 4-48 (108)
343 smart00529 HTH_DTXR Helix-turn 91.6 0.35 7.5E-06 35.5 4.5 46 53-108 2-47 (96)
344 KOG1596 Fibrillarin and relate 91.4 1.2 2.6E-05 38.4 7.8 95 191-289 154-260 (317)
345 smart00345 HTH_GNTR helix_turn 91.1 0.55 1.2E-05 30.7 4.7 33 50-89 19-52 (60)
346 PF00325 Crp: Bacterial regula 91.0 0.32 6.8E-06 27.8 2.8 31 50-87 2-32 (32)
347 PF07109 Mg-por_mtran_C: Magne 90.9 1.3 2.8E-05 32.5 6.6 86 258-355 2-96 (97)
348 PF05711 TylF: Macrocin-O-meth 90.5 0.34 7.3E-06 42.5 4.0 96 193-290 74-212 (248)
349 TIGR01610 phage_O_Nterm phage 90.3 1.1 2.5E-05 32.9 6.1 44 49-101 46-89 (95)
350 PRK10870 transcriptional repre 90.1 0.61 1.3E-05 38.7 5.1 65 36-108 58-125 (176)
351 PF06962 rRNA_methylase: Putat 90.1 0.26 5.7E-06 39.0 2.6 103 219-346 1-127 (140)
352 cd07377 WHTH_GntR Winged helix 90.0 0.6 1.3E-05 31.2 4.2 32 51-89 26-57 (66)
353 PRK04172 pheS phenylalanyl-tRN 89.7 0.49 1.1E-05 46.2 4.8 67 34-111 7-73 (489)
354 COG3432 Predicted transcriptio 89.6 0.39 8.5E-06 35.1 3.0 53 49-108 30-82 (95)
355 COG4190 Predicted transcriptio 89.3 0.56 1.2E-05 36.2 3.8 47 34-90 65-111 (144)
356 PF00392 GntR: Bacterial regul 89.3 0.62 1.3E-05 31.4 3.7 35 49-90 22-57 (64)
357 cd08283 FDH_like_1 Glutathione 89.1 3 6.5E-05 39.3 9.5 100 191-292 182-308 (386)
358 PF11899 DUF3419: Protein of u 89.0 0.8 1.7E-05 42.9 5.4 60 236-295 275-339 (380)
359 PF03444 HrcA_DNA-bdg: Winged 88.9 1.1 2.4E-05 31.4 4.7 49 49-105 22-70 (78)
360 COG2933 Predicted SAM-dependen 88.8 1.3 2.8E-05 38.8 6.0 85 191-283 209-296 (358)
361 PRK06474 hypothetical protein; 88.5 0.82 1.8E-05 38.0 4.6 69 28-105 6-80 (178)
362 PRK15431 ferrous iron transpor 88.4 1 2.2E-05 31.6 4.3 42 39-90 8-49 (78)
363 PF08279 HTH_11: HTH domain; 88.0 1.1 2.4E-05 29.0 4.2 40 37-85 4-43 (55)
364 PF10354 DUF2431: Domain of un 87.9 10 0.00022 31.1 10.6 121 199-346 2-154 (166)
365 PF01726 LexA_DNA_bind: LexA D 87.7 0.8 1.7E-05 31.1 3.4 34 50-89 25-58 (65)
366 PF01189 Nol1_Nop2_Fmu: NOL1/N 87.7 1.1 2.3E-05 40.4 5.2 103 191-293 83-222 (283)
367 PLN02853 Probable phenylalanyl 87.6 1 2.2E-05 43.3 5.2 68 33-111 3-71 (492)
368 COG1846 MarR Transcriptional r 87.6 1.1 2.3E-05 34.3 4.6 68 32-109 21-91 (126)
369 cd07153 Fur_like Ferric uptake 87.4 1.4 2.9E-05 33.6 5.0 47 35-90 3-54 (116)
370 COG1733 Predicted transcriptio 87.1 1.7 3.7E-05 33.5 5.3 76 13-108 12-91 (120)
371 PF05971 Methyltransf_10: Prot 86.8 0.84 1.8E-05 41.1 4.0 72 194-266 103-192 (299)
372 PF02002 TFIIE_alpha: TFIIE al 86.8 0.72 1.6E-05 34.6 3.1 44 37-90 17-60 (105)
373 PRK05638 threonine synthase; V 86.8 0.96 2.1E-05 43.5 4.7 62 35-107 373-437 (442)
374 PRK13777 transcriptional regul 86.7 1.5 3.3E-05 36.6 5.2 62 37-108 49-113 (185)
375 COG2512 Predicted membrane-ass 86.4 0.95 2.1E-05 40.0 4.0 49 35-92 197-245 (258)
376 COG1063 Tdh Threonine dehydrog 86.3 6.2 0.00014 36.7 9.7 94 194-295 169-274 (350)
377 PF01861 DUF43: Protein of unk 85.8 23 0.0005 30.9 13.1 123 193-346 44-180 (243)
378 PF10007 DUF2250: Uncharacteri 85.5 2.2 4.7E-05 31.1 4.9 46 35-90 9-54 (92)
379 PRK11179 DNA-binding transcrip 85.4 1.3 2.8E-05 35.8 4.1 45 34-88 10-54 (153)
380 PRK10742 putative methyltransf 85.1 1.9 4.1E-05 37.7 5.2 44 182-228 76-122 (250)
381 COG4565 CitB Response regulato 85.0 1.2 2.5E-05 37.8 3.7 35 49-90 172-206 (224)
382 PF02153 PDH: Prephenate dehyd 84.9 1.9 4.2E-05 38.1 5.4 77 207-289 1-78 (258)
383 PF13730 HTH_36: Helix-turn-he 84.8 1.4 3E-05 28.5 3.3 29 52-87 27-55 (55)
384 PF08784 RPA_C: Replication pr 84.7 1.1 2.4E-05 33.4 3.2 47 35-88 49-96 (102)
385 COG1378 Predicted transcriptio 84.6 1.7 3.8E-05 38.1 4.8 63 35-108 18-80 (247)
386 COG1497 Predicted transcriptio 84.5 2.2 4.7E-05 36.8 5.1 46 50-105 25-70 (260)
387 PF14394 DUF4423: Domain of un 84.3 1.9 4.2E-05 35.6 4.7 44 51-104 40-85 (171)
388 PTZ00326 phenylalanyl-tRNA syn 84.2 2.1 4.6E-05 41.3 5.6 68 34-111 7-74 (494)
389 COG0287 TyrA Prephenate dehydr 84.0 6.4 0.00014 35.3 8.2 86 195-286 4-94 (279)
390 PRK11169 leucine-responsive tr 83.6 1.4 3.1E-05 36.0 3.7 46 33-88 14-59 (164)
391 PRK09424 pntA NAD(P) transhydr 83.5 8.6 0.00019 37.6 9.4 94 193-291 164-286 (509)
392 PF13384 HTH_23: Homeodomain-l 83.5 1.1 2.5E-05 28.2 2.4 41 34-86 6-46 (50)
393 TIGR01321 TrpR trp operon repr 83.3 4.6 9.9E-05 29.5 5.7 43 29-82 38-80 (94)
394 PF07789 DUF1627: Protein of u 83.2 1.9 4.2E-05 34.0 4.0 46 49-101 5-50 (155)
395 PF05732 RepL: Firmicute plasm 83.0 1.7 3.6E-05 35.7 3.8 45 50-104 75-119 (165)
396 PRK04214 rbn ribonuclease BN/u 82.8 1.9 4.1E-05 41.1 4.6 43 49-101 309-351 (412)
397 PF12793 SgrR_N: Sugar transpo 82.7 2 4.3E-05 32.9 3.9 35 49-90 18-52 (115)
398 PF13545 HTH_Crp_2: Crp-like h 82.6 1.6 3.5E-05 30.3 3.2 41 50-101 28-68 (76)
399 COG1510 Predicted transcriptio 82.5 1.5 3.2E-05 35.7 3.2 39 49-94 40-78 (177)
400 COG1522 Lrp Transcriptional re 82.5 1.9 4.1E-05 34.6 4.0 45 34-88 9-53 (154)
401 PF08221 HTH_9: RNA polymerase 82.5 2 4.3E-05 28.8 3.4 42 38-89 18-59 (62)
402 PRK07502 cyclohexadienyl dehyd 82.4 7.1 0.00015 35.5 8.2 90 194-288 6-98 (307)
403 PF05206 TRM13: Methyltransfer 82.4 3.7 8E-05 36.4 6.0 36 191-226 16-56 (259)
404 COG3413 Predicted DNA binding 81.9 2.2 4.7E-05 36.7 4.3 33 25-63 159-191 (215)
405 PRK13699 putative methylase; P 80.9 6.9 0.00015 33.9 7.1 76 238-343 2-95 (227)
406 PF13518 HTH_28: Helix-turn-he 80.4 2.7 5.8E-05 26.6 3.4 30 51-87 13-42 (52)
407 cd00315 Cyt_C5_DNA_methylase C 80.4 9.5 0.00021 34.1 8.1 122 196-343 2-142 (275)
408 PRK09775 putative DNA-binding 80.1 2.3 5E-05 40.8 4.2 54 38-104 5-58 (442)
409 PF14338 Mrr_N: Mrr N-terminal 79.0 18 0.00039 26.2 7.8 34 73-109 56-89 (92)
410 PF11599 AviRa: RRNA methyltra 78.9 15 0.00033 31.3 8.1 99 192-290 50-214 (246)
411 PRK13509 transcriptional repre 78.8 3 6.5E-05 36.8 4.2 44 36-89 8-51 (251)
412 KOG2539 Mitochondrial/chloropl 77.9 7.6 0.00016 37.0 6.7 102 193-294 200-319 (491)
413 KOG2651 rRNA adenine N-6-methy 77.1 4.5 9.7E-05 37.5 4.8 43 182-225 142-184 (476)
414 PTZ00357 methyltransferase; Pr 77.0 19 0.00042 36.3 9.3 91 195-285 702-830 (1072)
415 PF02636 Methyltransf_28: Puta 76.9 4.2 9.1E-05 35.9 4.6 33 193-225 18-58 (252)
416 PF02319 E2F_TDP: E2F/DP famil 76.9 2.3 5E-05 29.4 2.3 43 49-99 23-68 (71)
417 PRK07417 arogenate dehydrogena 76.6 13 0.00029 33.2 7.9 83 196-286 2-87 (279)
418 cd01842 SGNH_hydrolase_like_5 76.3 5.8 0.00013 32.7 4.8 41 253-293 52-102 (183)
419 PF02796 HTH_7: Helix-turn-hel 76.1 3.1 6.7E-05 25.7 2.6 22 50-78 21-42 (45)
420 PF04182 B-block_TFIIIC: B-blo 76.1 3.1 6.8E-05 29.0 2.9 49 34-90 3-51 (75)
421 PF13404 HTH_AsnC-type: AsnC-t 76.0 4.3 9.4E-05 24.7 3.2 27 34-63 4-30 (42)
422 PF08222 HTH_CodY: CodY helix- 75.9 2.9 6.3E-05 27.2 2.4 35 49-90 3-37 (61)
423 PRK10906 DNA-binding transcrip 75.7 3.9 8.5E-05 36.1 4.1 45 35-89 7-51 (252)
424 PRK00215 LexA repressor; Valid 75.5 4.7 0.0001 34.3 4.4 35 49-90 22-57 (205)
425 TIGR01202 bchC 2-desacetyl-2-h 75.4 19 0.00041 32.6 8.7 87 193-292 144-233 (308)
426 TIGR02787 codY_Gpos GTP-sensin 75.3 5 0.00011 34.7 4.4 45 37-90 187-231 (251)
427 KOG1501 Arginine N-methyltrans 75.1 2.9 6.2E-05 39.4 3.1 90 193-283 66-168 (636)
428 PF14502 HTH_41: Helix-turn-he 75.0 6.7 0.00014 24.7 3.7 35 50-91 6-40 (48)
429 PRK09333 30S ribosomal protein 74.2 9 0.00019 30.6 5.3 56 49-108 66-128 (150)
430 PF12324 HTH_15: Helix-turn-he 74.1 3.6 7.8E-05 28.8 2.7 35 38-82 29-63 (77)
431 PRK10411 DNA-binding transcrip 74.1 6.2 0.00014 34.5 4.9 44 36-89 7-50 (240)
432 TIGR02147 Fsuc_second hypothet 73.9 5.9 0.00013 35.3 4.7 45 50-104 137-183 (271)
433 PRK15001 SAM-dependent 23S rib 73.7 21 0.00046 33.6 8.6 91 195-292 46-144 (378)
434 PF05584 Sulfolobus_pRN: Sulfo 73.4 8.1 0.00018 26.7 4.2 42 38-90 10-51 (72)
435 PRK09954 putative kinase; Prov 73.3 5.4 0.00012 37.2 4.7 43 36-88 6-48 (362)
436 PRK01381 Trp operon repressor; 73.2 8.5 0.00018 28.4 4.6 30 30-63 39-68 (99)
437 smart00531 TFIIE Transcription 72.9 6 0.00013 31.7 4.2 43 36-88 4-46 (147)
438 COG1255 Uncharacterized protei 72.8 40 0.00086 25.7 8.4 85 193-290 13-102 (129)
439 KOG0024 Sorbitol dehydrogenase 72.7 24 0.00052 32.2 8.1 95 191-294 167-277 (354)
440 COG5631 Predicted transcriptio 72.5 17 0.00036 29.3 6.3 51 49-105 97-147 (199)
441 PF11972 HTH_13: HTH DNA bindi 72.0 9.2 0.0002 24.7 4.0 47 38-100 4-50 (54)
442 PRK10434 srlR DNA-bindng trans 71.8 4.8 0.0001 35.6 3.7 45 35-89 7-51 (256)
443 COG1725 Predicted transcriptio 71.7 6.6 0.00014 30.4 3.9 41 51-100 36-76 (125)
444 PF07848 PaaX: PaaX-like prote 71.7 4.3 9.3E-05 28.0 2.6 49 49-104 19-70 (70)
445 TIGR03879 near_KaiC_dom probab 71.4 3.9 8.4E-05 28.4 2.3 32 50-88 32-63 (73)
446 PF12692 Methyltransf_17: S-ad 71.4 13 0.00029 29.7 5.5 110 182-293 19-137 (160)
447 COG1675 TFA1 Transcription ini 71.3 6.4 0.00014 32.5 4.0 45 36-90 21-65 (176)
448 PRK11534 DNA-binding transcrip 71.2 6.9 0.00015 33.7 4.5 36 48-90 28-63 (224)
449 TIGR03338 phnR_burk phosphonat 71.2 6.2 0.00014 33.6 4.2 35 49-90 33-67 (212)
450 PRK11886 bifunctional biotin-- 70.4 6.7 0.00015 35.9 4.5 56 36-103 7-62 (319)
451 PRK12423 LexA repressor; Provi 69.9 6.1 0.00013 33.5 3.8 34 50-90 25-59 (202)
452 PF03686 UPF0146: Uncharacteri 69.7 8.7 0.00019 29.8 4.2 87 193-292 13-104 (127)
453 COG0604 Qor NADPH:quinone redu 69.6 33 0.00072 31.5 8.9 95 190-293 139-244 (326)
454 PRK01747 mnmC bifunctional tRN 69.5 5.7 0.00012 40.5 4.1 97 193-289 57-205 (662)
455 COG0640 ArsR Predicted transcr 69.4 11 0.00023 27.2 4.8 53 29-91 21-73 (110)
456 PRK09802 DNA-binding transcrip 69.3 6.3 0.00014 35.2 3.9 46 34-89 18-63 (269)
457 PRK09464 pdhR transcriptional 68.7 8.2 0.00018 33.9 4.5 44 49-101 32-76 (254)
458 PHA02701 ORF020 dsRNA-binding 68.6 9.5 0.00021 31.5 4.4 48 34-90 5-52 (183)
459 PRK09990 DNA-binding transcrip 68.3 8.5 0.00018 33.8 4.5 44 48-100 28-72 (251)
460 PF02295 z-alpha: Adenosine de 68.3 7.8 0.00017 26.3 3.3 60 34-102 5-64 (66)
461 COG1565 Uncharacterized conser 68.2 23 0.00051 32.8 7.3 59 162-225 51-117 (370)
462 PRK04984 fatty acid metabolism 68.1 8.7 0.00019 33.4 4.5 43 49-100 29-72 (239)
463 COG2186 FadR Transcriptional r 67.9 7.3 0.00016 34.1 4.0 41 52-101 36-76 (241)
464 TIGR02812 fadR_gamma fatty aci 67.7 9.1 0.0002 33.2 4.6 44 48-100 27-71 (235)
465 PF00165 HTH_AraC: Bacterial r 67.5 4.7 0.0001 24.3 1.9 27 49-82 7-33 (42)
466 cd08237 ribitol-5-phosphate_DH 67.4 25 0.00053 32.4 7.7 94 191-291 161-257 (341)
467 PF00376 MerR: MerR family reg 67.3 8.5 0.00018 22.9 3.0 26 52-88 1-26 (38)
468 PRK10046 dpiA two-component re 66.9 7.6 0.00017 33.3 3.9 45 37-90 166-210 (225)
469 PRK10421 DNA-binding transcrip 66.9 9.4 0.0002 33.6 4.5 43 49-100 24-67 (253)
470 PF06969 HemN_C: HemN C-termin 66.8 7.9 0.00017 26.0 3.2 46 50-105 20-65 (66)
471 PRK08507 prephenate dehydrogen 66.8 25 0.00055 31.3 7.4 84 196-287 2-88 (275)
472 PRK10225 DNA-binding transcrip 66.7 9.4 0.0002 33.6 4.5 44 48-100 30-74 (257)
473 PF05331 DUF742: Protein of un 66.4 7.3 0.00016 29.7 3.2 34 49-89 54-87 (114)
474 TIGR02404 trehalos_R_Bsub treh 65.9 8.3 0.00018 33.4 3.9 40 52-100 26-65 (233)
475 PRK04424 fatty acid biosynthes 65.4 6.1 0.00013 33.0 2.9 45 35-89 9-53 (185)
476 COG1349 GlpR Transcriptional r 65.4 8.2 0.00018 34.1 3.8 45 35-89 7-51 (253)
477 PF03551 PadR: Transcriptional 65.4 8.6 0.00019 26.6 3.2 56 49-105 8-70 (75)
478 PF01475 FUR: Ferric uptake re 65.2 8.4 0.00018 29.5 3.4 65 32-101 7-73 (120)
479 PF09681 Phage_rep_org_N: N-te 64.9 12 0.00027 28.8 4.2 46 49-104 52-97 (121)
480 TIGR00561 pntA NAD(P) transhyd 64.6 21 0.00046 34.9 6.7 92 193-288 163-282 (511)
481 PF00126 HTH_1: Bacterial regu 64.5 16 0.00034 24.1 4.2 55 35-105 3-60 (60)
482 PRK05225 ketol-acid reductoiso 64.5 8.9 0.00019 36.7 4.0 92 193-292 35-133 (487)
483 TIGR02325 C_P_lyase_phnF phosp 64.4 9.2 0.0002 33.2 3.9 41 52-101 34-74 (238)
484 COG1748 LYS9 Saccharopine dehy 64.4 33 0.00071 32.3 7.7 66 195-260 2-77 (389)
485 PRK09880 L-idonate 5-dehydroge 64.4 36 0.00079 31.2 8.2 92 192-291 168-267 (343)
486 PF02254 TrkA_N: TrkA-N domain 64.2 9.3 0.0002 28.8 3.5 81 202-288 4-94 (116)
487 PF03428 RP-C: Replication pro 64.2 9.9 0.00022 31.5 3.8 32 51-89 71-103 (177)
488 PLN02494 adenosylhomocysteinas 64.1 16 0.00035 35.3 5.7 101 179-291 239-342 (477)
489 COG1802 GntR Transcriptional r 63.8 9.5 0.00021 33.0 3.9 36 48-90 37-72 (230)
490 PF09929 DUF2161: Uncharacteri 63.8 9.6 0.00021 29.0 3.3 50 40-105 66-115 (118)
491 PF08484 Methyltransf_14: C-me 63.7 79 0.0017 25.7 9.1 87 193-288 67-157 (160)
492 PRK11523 DNA-binding transcrip 63.7 12 0.00026 32.9 4.5 43 49-100 30-73 (253)
493 PRK14999 histidine utilization 63.6 9.4 0.0002 33.3 3.9 42 50-100 35-77 (241)
494 COG2188 PhnF Transcriptional r 63.3 10 0.00022 33.1 4.0 42 52-102 33-74 (236)
495 TIGR00498 lexA SOS regulatory 63.2 9.9 0.00021 32.1 3.8 34 50-89 25-58 (199)
496 TIGR02698 CopY_TcrY copper tra 63.2 15 0.00033 28.7 4.6 47 34-90 5-55 (130)
497 PRK11730 fadB multifunctional 63.1 28 0.00061 35.8 7.7 149 194-347 313-496 (715)
498 PF01371 Trp_repressor: Trp re 62.9 29 0.00062 25.1 5.5 42 28-81 31-73 (87)
499 PRK11414 colanic acid/biofilm 62.8 11 0.00024 32.3 4.1 36 48-90 32-67 (221)
500 KOG1209 1-Acyl dihydroxyaceton 62.6 74 0.0016 27.4 8.6 75 193-288 6-84 (289)
No 1
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=1.5e-45 Score=324.51 Aligned_cols=338 Identities=45% Similarity=0.760 Sum_probs=297.1
Q ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+.+..-++++++.++..+++|++|++||+||.|.+.+ + ..|||..+.. +-+|+.|. .+.|+||.|++.++++.
T Consensus 3 e~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~~---~--p~~ia~~l~~-~~~~~~p~-ll~r~lr~L~s~~i~k~ 75 (342)
T KOG3178|consen 3 ENEASLRAMRLANGFALPMVLKAACELGVFDILANAG---S--PSEIASLLPT-PKNPEAPV-LLDRILRLLVSYSILKC 75 (342)
T ss_pred hhHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhCC---C--HHHHHHhccC-CCCCCChh-HHHHHHHHHHHhhhcee
Confidence 3455678899999999999999999999999999953 2 8888888775 22566688 99999999999999997
Q ss_pred eeeCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHH
Q 018405 90 SFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVF 169 (356)
Q Consensus 90 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 169 (356)
.....+ .|++++.++++..++ +..++..++...+.++..+.|..+.++++.++.++..++|...++|...+......+
T Consensus 76 ~~~~~~-~Y~~~~~~~~~l~~~-~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~ 153 (342)
T KOG3178|consen 76 RLVGGE-VYSATPVCKYFLKDS-GGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDF 153 (342)
T ss_pred eeecce-eeeccchhhhheecC-CCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHH
Confidence 543333 899999999666444 246888888888889999999999999999999998899988899988888888899
Q ss_pred HHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-CCceEEEccCCCC
Q 018405 170 NTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-LGIEHVGGDFFES 248 (356)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~v~~~~~D~~~~ 248 (356)
+++|...+......+++.+.+|+.....+|||+|.|..+..++..||+++++.+|+|.+++.+... ++|+.+.+|++.+
T Consensus 154 ~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~ 233 (342)
T KOG3178|consen 154 NGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD 233 (342)
T ss_pred HHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc
Confidence 999999998888888888887888999999999999999999999999999999999999999888 8899999999999
Q ss_pred CCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC-CCCCchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405 249 VPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE-VPENSATSREISILDTICLFQVPHGRERTKQE 327 (356)
Q Consensus 249 ~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 327 (356)
.|.+|+|++.++||||+|++|.++|++|++.|+|||+++++|.+.++ .............+|+.|+.++.+|+.|+.+|
T Consensus 234 ~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e 313 (342)
T KOG3178|consen 234 TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKE 313 (342)
T ss_pred CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHH
Confidence 99999999999999999999999999999999999999999998875 22222223445667888888876799999999
Q ss_pred HHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 328 YSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 328 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
++.++.++||.+..+...+..+++||++|
T Consensus 314 ~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 314 FQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHhcchhhcCceeEEEeccCccchheeCC
Confidence 99999999999999999999999999987
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=3.2e-38 Score=287.39 Aligned_cols=290 Identities=21% Similarity=0.335 Sum_probs=209.3
Q ss_pred HHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 26 LPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 26 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
...+|++|++|||||.|.+ ||.|++|||+++|++ ++ .++|||++|++.|+++ ++ +++|++|+.+.
T Consensus 3 ~~~~l~aa~~Lglfd~L~~----gp~t~~eLA~~~~~~------~~-~~~~lL~~L~~lgll~---~~-~~~y~~t~~~~ 67 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAE----GPKDLATLAADTGSV------PP-RLEMLLETLRQMRVIN---LE-DGKWSLTEFAD 67 (306)
T ss_pred hHHHHHHHHHcCcHHHHhc----CCCCHHHHHHHcCCC------hH-HHHHHHHHHHhCCCeE---ec-CCcEecchhHH
Confidence 4578999999999999987 599999999999997 88 9999999999999999 34 48999999998
Q ss_pred HhhhCCCCCC---ChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHHh-hhhHHHH
Q 018405 106 YFVRNNQNGA---SLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGML-GHTCVVM 181 (356)
Q Consensus 106 ~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 181 (356)
.+..++ ++. ++.++..+.. ......|.+|.+.+++ +++|...++ +....+.. ..|...|. .......
T Consensus 68 ~~l~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~ 138 (306)
T TIGR02716 68 YMFSPT-PKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRG-QKNFKGQVP-----YPPVTRED-NLYFEEIHRSNAKFAI 138 (306)
T ss_pred hhccCC-ccchhhhcCchHHHHH-HHHHHHHHhHHHHhcC-CcccccccC-----CCCCCHHH-HHhHHHHHHhcchhHH
Confidence 555444 121 1122222221 1223568899999884 444432221 11111222 23333343 3333445
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCCc
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEAD 253 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D 253 (356)
+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++ +|++++.+|+++ ++|.+|
T Consensus 139 ~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D 217 (306)
T TIGR02716 139 QLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD 217 (306)
T ss_pred HHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCC
Confidence 56677666 888899999999999999999999999999999998888776532 579999999997 667679
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh-hhhhhhhhcCCCccCCHHHHHHHH
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI-LDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
+|++++++|+|+++++.++|++++++|+|||+++|.|.+.++.... ........ ....+.. . -...++.++|.++|
T Consensus 218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~e~~~ll 294 (306)
T TIGR02716 218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENP-NFDYLSHYILGAGMPF-S-VLGFKEQARYKEIL 294 (306)
T ss_pred EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-hhhHHHHHHHHccccc-c-cccCCCHHHHHHHH
Confidence 9999999999999889999999999999999999999887654322 11111111 1111111 0 11234689999999
Q ss_pred HHcCCcceeEE
Q 018405 333 IKAGFKGVNYE 343 (356)
Q Consensus 333 ~~aGf~~~~~~ 343 (356)
+++||+.++++
T Consensus 295 ~~aGf~~v~~~ 305 (306)
T TIGR02716 295 ESLGYKDVTMV 305 (306)
T ss_pred HHcCCCeeEec
Confidence 99999988754
No 3
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=7.3e-39 Score=282.04 Aligned_cols=236 Identities=30% Similarity=0.563 Sum_probs=203.2
Q ss_pred CcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHHh
Q 018405 95 QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGML 174 (356)
Q Consensus 95 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 174 (356)
+++|++|+.++.|..++ ++.++..++.+...+.++..|.+|.+++++|.++|+..+|.++|+++.++++..+.|+.+|.
T Consensus 3 ~~~y~~t~~s~~ll~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDH-SSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp TEEEEE-HHHHGGSTTT-TTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCC-CcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 48999999999777666 23467777777667888999999999999999999999998899999999999999999999
Q ss_pred hhhHHHH-HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCCCCc
Q 018405 175 GHTCVVM-EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPEAD 253 (356)
Q Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~~D 253 (356)
..+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.||+++++|.+|
T Consensus 82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 8888777 77777777 999999999999999999999999999999999999999988888999999999999888899
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCC--CEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDG--GKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pg--G~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
+|+++++||+|+|+++.++|++++++|+|| |+|+|+|.+.++.............+|+.|+..+ +|+.||.+||.+|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~l 239 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEAL 239 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHHH
Confidence 999999999999999999999999999999 9999999999887655433323357899999887 6999999999999
Q ss_pred HH
Q 018405 332 AI 333 (356)
Q Consensus 332 l~ 333 (356)
|+
T Consensus 240 l~ 241 (241)
T PF00891_consen 240 LK 241 (241)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 4
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.82 E-value=4.9e-19 Score=151.92 Aligned_cols=160 Identities=23% Similarity=0.303 Sum_probs=123.0
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEeccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKWV 260 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~v 260 (356)
..++.+|||||||||..+..+++..+..+++++|. +.|++.++++ ..++|+.+|..+ |+|++ |+|++++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 44789999999999999999999999999999996 9999998765 238999999999 99986 99999999
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhh-hhhhc---CC-------------CccC
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTI-CLFQV---PH-------------GRER 323 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~-------------~~~~ 323 (356)
|++++| ..++|++++|+|||||+++++|...+...... .....+... .+... .. -..+
T Consensus 129 lrnv~d--~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 129 LRNVTD--IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hhcCCC--HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 999975 89999999999999999999999887653221 111112111 11111 00 1234
Q ss_pred CHHHHHHHHHHcCCcceeEEEccCc-eeEEEEe
Q 018405 324 TKQEYSELAIKAGFKGVNYEYGACN-LYVMEFL 355 (356)
Q Consensus 324 t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~ 355 (356)
+.+++.++++++||+.+.......+ ..+..++
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEe
Confidence 7899999999999999886555443 3344443
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.78 E-value=1.3e-17 Score=147.95 Aligned_cols=160 Identities=20% Similarity=0.225 Sum_probs=117.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCC-CCCCC--cEEE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFE-SVPEA--DTIL 256 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~--D~i~ 256 (356)
..+..+|||||||+|.++..+++.+ |+.+++++|. +.+++.|+++ ++++++.+|+.+ |++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5677899999999999999998875 6679999996 8888877532 478999999988 77764 9999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh-hhh--hhhhh-cCC-----------Cc
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI-LDT--ICLFQ-VPH-----------GR 321 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~~-----------~~ 321 (356)
+..++|++++ ..++|++++++|||||++++.|...++..- ......+ +.. ..... ... ..
T Consensus 151 ~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVD--RLKAMQEMYRVLKPGSRVSILDFNKSTQPF---TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCC--HHHHHHHHHHHcCcCcEEEEEECCCCCcHH---HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 9999999965 789999999999999999999987654311 0111000 000 00000 000 22
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEccCc-eeEEEEe
Q 018405 322 ERTKQEYSELAIKAGFKGVNYEYGACN-LYVMEFL 355 (356)
Q Consensus 322 ~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~ 355 (356)
.++++++.++++++||+.++......+ ..+..++
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 468999999999999999987776544 3354443
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.78 E-value=9.5e-20 Score=158.09 Aligned_cols=161 Identities=24% Similarity=0.335 Sum_probs=81.9
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEecc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKW 259 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~ 259 (356)
..++.+|||+|||||..+..+++.. |+.+++++|. +.+++.++++ .+|+++++|..+ |++++ |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5677899999999999999999875 6789999996 9999888753 589999999999 88875 9999999
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh----cCC------------CccC
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ----VPH------------GRER 323 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~------------~~~~ 323 (356)
.+|+++| ..+.|++++++|||||+++|+|...+..+ ........+-...+.. ..+ ....
T Consensus 125 glrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~~~---~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~ 199 (233)
T PF01209_consen 125 GLRNFPD--RERALREMYRVLKPGGRLVILEFSKPRNP---LLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFP 199 (233)
T ss_dssp -GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-SSH---HHHHHHHH-------------------------------
T ss_pred hHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCCCc---hhhceeeeeeccccccccccccccccccccccccccccc
Confidence 9999976 68899999999999999999999887642 1111111100000000 000 1123
Q ss_pred CHHHHHHHHHHcCCcceeEEEccC-ceeEEEEeC
Q 018405 324 TKQEYSELAIKAGFKGVNYEYGAC-NLYVMEFLK 356 (356)
Q Consensus 324 t~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~~ 356 (356)
+.+++.++++++||+.++..+... ..+++.++|
T Consensus 200 ~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 200 SPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccCC
Confidence 789999999999999988877654 444655554
No 7
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.78 E-value=1e-18 Score=153.67 Aligned_cols=162 Identities=16% Similarity=0.160 Sum_probs=118.6
Q ss_pred CCCceEEEEcCCccHHHHHHHHhC--CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCCcEEEeccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKY--PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEADTILMKWV 260 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~v 260 (356)
.+..+|||||||+|..+..+++.+ |+.+++++|. +.+++.++++ .+++++.+|+.+ +.+..|+|++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 466799999999999999999864 7899999997 8888877543 368999999988 6666799999999
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhh--------------hhcCCCccCCHH
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICL--------------FQVPHGRERTKQ 326 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~t~~ 326 (356)
+||+++++...+|++++++|+|||.+++.|.+..++..... ........+.. .........|.+
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~ 209 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH--LLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIE 209 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHH
Confidence 99999888899999999999999999999987655422110 00000000000 000012346899
Q ss_pred HHHHHHHHcCCcceeEEEccCceeEEEEe
Q 018405 327 EYSELAIKAGFKGVNYEYGACNLYVMEFL 355 (356)
Q Consensus 327 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 355 (356)
++.+++++|||+.+++......+.++.++
T Consensus 210 ~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 210 THKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred HHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 99999999999987765544444444333
No 8
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.76 E-value=2.3e-17 Score=146.56 Aligned_cols=156 Identities=22% Similarity=0.282 Sum_probs=119.2
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA-- 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~-- 252 (356)
...+++.+. +.+..+|||||||+|..+..+++.+ +.+++++|. +.+++.++++ +++.++.+|+.+ ++++.
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 356677676 7788999999999999999998765 678999996 7777766542 579999999987 67654
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
|+|++..+++|++.++...+|++++++|+|||++++.+......... ..... . +.. .......+.+++.+++
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~--~~~~~---~--~~~-~~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENW--DEEFK---A--YIK-KRKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCc--HHHHH---H--HHH-hcCCCCCCHHHHHHHH
Confidence 99999999999987678999999999999999999998866542111 11110 0 011 0122346899999999
Q ss_pred HHcCCcceeEEEcc
Q 018405 333 IKAGFKGVNYEYGA 346 (356)
Q Consensus 333 ~~aGf~~~~~~~~~ 346 (356)
+++||+++......
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999887653
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.76 E-value=2.9e-18 Score=151.27 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=113.2
Q ss_pred CCCceEEEEcCCccHHHHHHHH--hCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCCcEEEeccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIIS--KYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEADTILMKWV 260 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~D~i~~~~v 260 (356)
.+..+|||||||+|..+..+++ ..|+.+++++|. +.+++.++++ .+++++.+|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4668999999999999999888 458999999996 8898888653 379999999987 6666699999999
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh--------hh----hcCC-CccCCHHH
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC--------LF----QVPH-GRERTKQE 327 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~-~~~~t~~e 327 (356)
+|++++++...++++++++|+|||.+++.|.+..++...... .......... .. ...+ -...|.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999988888999999999999999999999776544322110 0000000000 00 0000 11248999
Q ss_pred HHHHHHHcCCcceeEEEc
Q 018405 328 YSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 328 ~~~ll~~aGf~~~~~~~~ 345 (356)
..++|++|||+.+.+..-
T Consensus 214 ~~~~L~~aGF~~v~~~~~ 231 (247)
T PRK15451 214 HKARLHKAGFEHSELWFQ 231 (247)
T ss_pred HHHHHHHcCchhHHHHHH
Confidence 999999999998765443
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.75 E-value=3.2e-17 Score=143.51 Aligned_cols=167 Identities=17% Similarity=0.226 Sum_probs=122.2
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC-
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA- 252 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~- 252 (356)
.++..+. +.+..+|||+|||+|..+..+++.+ |..+++++|. +.+++.+++. ++++++.+|..+ +++..
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 4455555 6677899999999999999999886 6789999996 7877666532 578999999987 65543
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh-hhh--h--------------hh
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI-LDT--I--------------CL 314 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~-~~~--~--------------~~ 314 (356)
|+|++..++|++++ ..++|+++.+.|+|||++++.+...+... ........ +.. . .+
T Consensus 115 fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231)
T TIGR02752 115 FDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIP---GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231)
T ss_pred ccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCCh---HHHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence 99999999999865 67999999999999999999887654321 00000000 000 0 00
Q ss_pred hhcCCCccCCHHHHHHHHHHcCCcceeEEEcc-CceeEEEEeC
Q 018405 315 FQVPHGRERTKQEYSELAIKAGFKGVNYEYGA-CNLYVMEFLK 356 (356)
Q Consensus 315 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 356 (356)
... ....++.+++.++++++||+++++.+.. +..+++.++|
T Consensus 190 ~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 190 QES-TRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHH-HHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 000 1123578999999999999999988876 6677887776
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.74 E-value=7.3e-17 Score=143.23 Aligned_cols=157 Identities=19% Similarity=0.200 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCC--CcEEEe
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPE--ADTILM 257 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~--~D~i~~ 257 (356)
...+++.++ ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. +++++.+|+.+..+. .|+|++
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEE
Confidence 356677776 66789999999999999999999999999999997 8888888654 689999998763232 399999
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhh---hhhhh-hhhhhcCCCccCCHHHHHHHHH
Q 018405 258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI---SILDT-ICLFQVPHGRERTKQEYSELAI 333 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~t~~e~~~ll~ 333 (356)
..++||+++ ..++|++++++|+|||++++..+............... .+... ............+.+++.++|+
T Consensus 96 ~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 96 NAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred ehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 999999975 68999999999999999998643211110000000000 00000 0000001223468999999999
Q ss_pred HcCCccee
Q 018405 334 KAGFKGVN 341 (356)
Q Consensus 334 ~aGf~~~~ 341 (356)
++||++..
T Consensus 174 ~aGf~v~~ 181 (255)
T PRK14103 174 DAGCKVDA 181 (255)
T ss_pred hCCCeEEE
Confidence 99998543
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.72 E-value=2.4e-16 Score=145.22 Aligned_cols=161 Identities=20% Similarity=0.263 Sum_probs=114.4
Q ss_pred HHHHHHHhcCC-----CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC
Q 018405 181 MEKVLESYKGF-----EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE 247 (356)
Q Consensus 181 ~~~~~~~~~~~-----~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~ 247 (356)
...+++.+. + .+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+
T Consensus 102 ~~~~l~~~~-~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 102 IEESLAWAG-VPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred HHHHHHhcC-CCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 344555444 3 567899999999999999999987 679999996 7777665432 479999999988
Q ss_pred -CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC--chhhhhhhhhhhhhhhhcCCCcc
Q 018405 248 -SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN--SATSREISILDTICLFQVPHGRE 322 (356)
Q Consensus 248 -~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 322 (356)
+++++ |+|++..++||+++ ..++|++++++|+|||+++|.+......... .........+........ .-..
T Consensus 180 ~~~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~ 256 (340)
T PLN02244 180 QPFEDGQFDLVWSMESGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAW 256 (340)
T ss_pred CCCCCCCccEEEECCchhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCC
Confidence 76654 99999999999976 6899999999999999999988654321110 000000111111111000 0122
Q ss_pred CCHHHHHHHHHHcCCcceeEEEcc
Q 018405 323 RTKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 323 ~t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
.+.++|.++++++||.++++....
T Consensus 257 ~s~~~~~~~l~~aGf~~v~~~d~s 280 (340)
T PLN02244 257 CSTSDYVKLAESLGLQDIKTEDWS 280 (340)
T ss_pred CCHHHHHHHHHHCCCCeeEeeeCc
Confidence 489999999999999999877653
No 13
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.71 E-value=2.7e-16 Score=132.51 Aligned_cols=151 Identities=20% Similarity=0.249 Sum_probs=114.7
Q ss_pred HHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC------CeEEEccc-hHHHHhCCCC---------CCceEEEccCCC-
Q 018405 185 LESYKGFEHVKKLVDVGGGLGATLNMIISKYPR------IKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFE- 247 (356)
Q Consensus 185 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~- 247 (356)
+..+. .....++||++||||..+..+++..+. .+++++|+ |++++.++++ .++.++++|..+
T Consensus 93 v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 93 VSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 33443 445689999999999999999998877 78999996 9998877553 459999999999
Q ss_pred CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc---CC---
Q 018405 248 SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV---PH--- 319 (356)
Q Consensus 248 ~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--- 319 (356)
|+|++ |.+++.+.+.++++ ..+.|++++|+|||||++.+.|+.--+.. +..+++..+.+..+... ..
T Consensus 172 pFdd~s~D~yTiafGIRN~th--~~k~l~EAYRVLKpGGrf~cLeFskv~~~---~l~~fy~~ysf~VlpvlG~~iagd~ 246 (296)
T KOG1540|consen 172 PFDDDSFDAYTIAFGIRNVTH--IQKALREAYRVLKPGGRFSCLEFSKVENE---PLKWFYDQYSFDVLPVLGEIIAGDR 246 (296)
T ss_pred CCCCCcceeEEEecceecCCC--HHHHHHHHHHhcCCCcEEEEEEccccccH---HHHHHHHhhhhhhhchhhHhhhhhH
Confidence 99976 99999999999977 89999999999999999999997654321 12222222221111110 00
Q ss_pred ----------CccCCHHHHHHHHHHcCCccee
Q 018405 320 ----------GRERTKQEYSELAIKAGFKGVN 341 (356)
Q Consensus 320 ----------~~~~t~~e~~~ll~~aGf~~~~ 341 (356)
.+.++.+++..+.++|||+.+.
T Consensus 247 ~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 247 KSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 1234889999999999999886
No 14
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.69 E-value=1e-15 Score=139.10 Aligned_cols=140 Identities=26% Similarity=0.286 Sum_probs=109.4
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--cEEEecccccCC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--DTILMKWVLSSF 264 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~ 264 (356)
.+..+|||||||+|..+..+++.++..+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999888889999996 7887777653 578999999987 66543 999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405 265 DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 344 (356)
++ ...+|++++++|+|||++++.+...+.. +..+ ...+.+ ....+.+++.++++++||+.+++..
T Consensus 192 ~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~-------~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 192 PD--PQRGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVW-------MLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred CC--HHHHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhh-------ccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 76 4689999999999999999987654321 0000 011111 1125789999999999999998877
Q ss_pred cc
Q 018405 345 GA 346 (356)
Q Consensus 345 ~~ 346 (356)
..
T Consensus 257 i~ 258 (340)
T PLN02490 257 IG 258 (340)
T ss_pred cC
Confidence 54
No 15
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.69 E-value=2e-15 Score=132.79 Aligned_cols=169 Identities=18% Similarity=0.231 Sum_probs=121.4
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPE 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 251 (356)
..+++.+. ..+..+|||||||+|.++..++..+| ..+++++|. +.+++.+++. .++.++.+|+.+ +.+.
T Consensus 41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 119 (239)
T PRK00216 41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD 119 (239)
T ss_pred HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence 34455554 44678999999999999999999987 789999996 7776666442 468899999887 4443
Q ss_pred C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhh----hhcCC------
Q 018405 252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICL----FQVPH------ 319 (356)
Q Consensus 252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~------ 319 (356)
+ |+|++.+++|++++ ...+|+++.++|+|||++++++...+.... .......+....+ ....+
T Consensus 120 ~~~D~I~~~~~l~~~~~--~~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (239)
T PRK00216 120 NSFDAVTIAFGLRNVPD--IDKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYS 194 (239)
T ss_pred CCccEEEEecccccCCC--HHHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHH
Confidence 3 99999999999965 789999999999999999999876654311 0000000000000 00000
Q ss_pred ------CccCCHHHHHHHHHHcCCcceeEEEcc-CceeEEEEeC
Q 018405 320 ------GRERTKQEYSELAIKAGFKGVNYEYGA-CNLYVMEFLK 356 (356)
Q Consensus 320 ------~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 356 (356)
...++.++|.++++++||+.+++.... +...++.++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 195 YLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123578999999999999999998865 5567888775
No 16
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=2.7e-15 Score=130.50 Aligned_cols=168 Identities=20% Similarity=0.228 Sum_probs=120.0
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--c
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA--D 253 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--D 253 (356)
.+++.+. ..+..+|||+|||+|..+..+++.+|. .+++++|. +.+++.++++ .+++++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 4444444 446789999999999999999999987 78999996 6776665442 478999999987 55443 9
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC-----C---------
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP-----H--------- 319 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------- 319 (356)
+|++..++|+.++ ...+|+++++.|+|||++++++...+.... .......... .++.... .
T Consensus 109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 183 (223)
T TIGR01934 109 AVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANAL--LKKFYKFYLK-NVLPSIGGLISKNAEAYTYLPE 183 (223)
T ss_pred EEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchh--hHHHHHHHHH-HhhhhhhhhhcCCchhhHHHHH
Confidence 9999999999865 789999999999999999999876543210 0000000000 0000000 0
Q ss_pred --CccCCHHHHHHHHHHcCCcceeEEEccCce-eEEEEeC
Q 018405 320 --GRERTKQEYSELAIKAGFKGVNYEYGACNL-YVMEFLK 356 (356)
Q Consensus 320 --~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-~vi~~~~ 356 (356)
....+.++|.++++++||+.+.+.+..... .+++++|
T Consensus 184 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 184 SIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 123478999999999999999999887664 4666654
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.67 E-value=1.2e-15 Score=147.53 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=116.6
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA- 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~- 252 (356)
...+++.+. +++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.|+++ .++++..+|+.+ ++|+.
T Consensus 255 te~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~ 332 (475)
T PLN02336 255 TKEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS 332 (475)
T ss_pred HHHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence 445666666 6677899999999999999998876 779999997 7777776432 478999999988 66653
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
|+|++..+++|+++ ...+|++++++|+|||++++.+......... ...... ... .+...++.+++.++
T Consensus 333 fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~---~~~~~~-----~~~-~g~~~~~~~~~~~~ 401 (475)
T PLN02336 333 FDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPS---PEFAEY-----IKQ-RGYDLHDVQAYGQM 401 (475)
T ss_pred EEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCc---HHHHHH-----HHh-cCCCCCCHHHHHHH
Confidence 99999999999965 6899999999999999999998766432211 111111 111 13456789999999
Q ss_pred HHHcCCcceeEEEc
Q 018405 332 AIKAGFKGVNYEYG 345 (356)
Q Consensus 332 l~~aGf~~~~~~~~ 345 (356)
++++||+++.+...
T Consensus 402 l~~aGF~~i~~~d~ 415 (475)
T PLN02336 402 LKDAGFDDVIAEDR 415 (475)
T ss_pred HHHCCCeeeeeecc
Confidence 99999999876543
No 18
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.67 E-value=8.6e-16 Score=134.23 Aligned_cols=158 Identities=22% Similarity=0.254 Sum_probs=128.0
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~ 251 (356)
....+++.+. ++++.+|||||||.|.++...++++ +++++++++ ++..+.++++ .++++...|..+..+.
T Consensus 60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 3567777787 9999999999999999999999999 899999996 6666665542 4789999998874444
Q ss_pred CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
.|-|++..+++|+..+.....++++++.|+|||++++.....+..... ...++..--.+|+|..++..++.+.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~ 210 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILEL 210 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHH
Confidence 799999999999999999999999999999999999998887664321 1112222222579999999999999
Q ss_pred HHHcCCcceeEEEcc
Q 018405 332 AIKAGFKGVNYEYGA 346 (356)
Q Consensus 332 l~~aGf~~~~~~~~~ 346 (356)
.+++||.+.+.....
T Consensus 211 ~~~~~~~v~~~~~~~ 225 (283)
T COG2230 211 ASEAGFVVLDVESLR 225 (283)
T ss_pred HHhcCcEEehHhhhc
Confidence 999999998766553
No 19
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.67 E-value=2.7e-15 Score=135.33 Aligned_cols=154 Identities=15% Similarity=0.021 Sum_probs=107.8
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC-------CCCCCceEEEccCCC-CCCCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA-------PSYLGIEHVGGDFFE-SVPEA 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~~~~v~~~~~D~~~-~~~~~ 252 (356)
..++..+. ..+..+|||||||+|.++..++...+. .++++|. +.++.++ ....++.+..+|+.+ +....
T Consensus 111 ~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~ 188 (314)
T TIGR00452 111 DRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYA 188 (314)
T ss_pred HHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCC
Confidence 34555554 445689999999999999999887664 7899995 5555432 122567888888776 43334
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
|+|++..+|||+++ ...+|++++++|+|||.|++.+...+.......... ...-.+.. ....++.+++..+
T Consensus 189 FD~V~s~gvL~H~~d--p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~---~ry~k~~n---v~flpS~~~L~~~ 260 (314)
T TIGR00452 189 FDTVFSMGVLYHRKS--PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK---DRYAKMKN---VYFIPSVSALKNW 260 (314)
T ss_pred cCEEEEcchhhccCC--HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch---HHHHhccc---cccCCCHHHHHHH
Confidence 99999999999965 689999999999999999998766543321110000 00101110 1124689999999
Q ss_pred HHHcCCcceeEEEc
Q 018405 332 AIKAGFKGVNYEYG 345 (356)
Q Consensus 332 l~~aGf~~~~~~~~ 345 (356)
++++||+.+++...
T Consensus 261 L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 261 LEKVGFENFRILDV 274 (314)
T ss_pred HHHCCCeEEEEEec
Confidence 99999999987654
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.66 E-value=1.9e-15 Score=137.83 Aligned_cols=153 Identities=17% Similarity=0.072 Sum_probs=108.1
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC-------CCCCceEEEccCCC-CCCCC-
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP-------SYLGIEHVGGDFFE-SVPEA- 252 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~~~~v~~~~~D~~~-~~~~~- 252 (356)
.+...++ .-...+|||||||+|.++..++...+. .++++|. +.++.+++ ...+++++.+|+.+ +.+..
T Consensus 113 ~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 3444454 234589999999999999999998765 5999996 54443221 12479999999887 65444
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
|+|++..++||..+ ...+|+++++.|+|||.+++.+.+.+.+........ ..+..+.. .-..+|.+++.+++
T Consensus 191 D~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~---~~y~~~~~---~~~lps~~~l~~~L 262 (322)
T PRK15068 191 DTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG---DRYAKMRN---VYFIPSVPALKNWL 262 (322)
T ss_pred CEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch---hHHhcCcc---ceeCCCHHHHHHHH
Confidence 99999999999865 689999999999999999987666554322111000 00000100 11246899999999
Q ss_pred HHcCCcceeEEEc
Q 018405 333 IKAGFKGVNYEYG 345 (356)
Q Consensus 333 ~~aGf~~~~~~~~ 345 (356)
+++||+.+++...
T Consensus 263 ~~aGF~~i~~~~~ 275 (322)
T PRK15068 263 ERAGFKDVRIVDV 275 (322)
T ss_pred HHcCCceEEEEeC
Confidence 9999999988754
No 21
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.65 E-value=9.6e-16 Score=126.23 Aligned_cols=137 Identities=21% Similarity=0.257 Sum_probs=97.6
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCC-C-cEEEecccccCCCh
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPE-A-DTILMKWVLSSFDD 266 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~-~-D~i~~~~vlh~~~~ 266 (356)
..+..+|||||||+|.++..+.+... +++++|. +.+++. ..+.....+... +.++ . |+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45788999999999999999976533 8999996 777766 234444433333 2333 3 99999999999975
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405 267 EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN 341 (356)
Q Consensus 267 ~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 341 (356)
...+|+++++.|+|||++++.++..... ....+..+ ...... ......+++++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~----~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDP----SPRSFLKW-RYDRPY-GGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSH----HHHHHHHC-CGTCHH-TTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcch----hhhHHHhc-CCcCcc-CceeccCCHHHHHHHHHHCCCEEEE
Confidence 8999999999999999999998876421 00011111 111100 0134567999999999999999875
No 22
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.65 E-value=1.1e-15 Score=135.57 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=111.1
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------CCCceEEEccCCCCCCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFESVPE 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~~~ 251 (356)
.+..+++++. ++++.+|||||||.|.++..+++++ +++++++.+ +...+.+++ .+++++...|+.+..+.
T Consensus 50 k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 50 KLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence 3567778777 8899999999999999999999998 789999986 555554432 25799999998763234
Q ss_pred CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
.|.|++..++.|+..+....+++++.++|+|||++++...+....... .......++...-.+|+|..++.+++...
T Consensus 128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~~~~ 204 (273)
T PF02353_consen 128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEILRA 204 (273)
T ss_dssp -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHHHHH
T ss_pred CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHHHHH
Confidence 499999999999998889999999999999999999987776542100 00000012222222478899999999999
Q ss_pred HHHcCCcceeEEEcc
Q 018405 332 AIKAGFKGVNYEYGA 346 (356)
Q Consensus 332 l~~aGf~~~~~~~~~ 346 (356)
++++||++..+....
T Consensus 205 ~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 205 AEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHTT-EEEEEEE-H
T ss_pred HhcCCEEEEEEEEcC
Confidence 999999998877654
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.64 E-value=2.4e-15 Score=131.03 Aligned_cols=136 Identities=20% Similarity=0.272 Sum_probs=106.6
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccCC
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSSF 264 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~ 264 (356)
.+|||||||+|..+..+++.+|+.+++++|+ +.+++.++.+ ++++++..|+.. +.++. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999996 7776666542 578999999876 55544 999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405 265 DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 344 (356)
++ ...+|++++++|+|||++++.+...+..... ... .......+.++|.++++++||++++...
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~--------~~~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIANLLSAI--------EHE------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEcccccCccc--------ccc------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 65 6899999999999999999998754321100 000 0012246889999999999999998876
Q ss_pred cc
Q 018405 345 GA 346 (356)
Q Consensus 345 ~~ 346 (356)
..
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 53
No 24
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.64 E-value=8.4e-16 Score=139.22 Aligned_cols=142 Identities=15% Similarity=0.047 Sum_probs=103.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCC--CcEEEecccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPE--ADTILMKWVL 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~--~D~i~~~~vl 261 (356)
+..+|||||||+|.++..+++ ++.+++++|. +.+++.++.+ .+++++.+|+.+ +.+. .|+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998886 5778999996 8888877642 368899999876 5443 3999999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhh-hhhhhhcC-----CCccCCHHHHHHHHHHc
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILD-TICLFQVP-----HGRERTKQEYSELAIKA 335 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~t~~e~~~ll~~a 335 (356)
||+++ ...+|++++++|+|||.+++........ ........ .....+.+ ..+.++++++.++++++
T Consensus 209 eHv~d--~~~~L~~l~r~LkPGG~liist~nr~~~------~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~a 280 (322)
T PLN02396 209 EHVAN--PAEFCKSLSALTIPNGATVLSTINRTMR------AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRA 280 (322)
T ss_pred HhcCC--HHHHHHHHHHHcCCCcEEEEEECCcCHH------HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHc
Confidence 99976 6899999999999999999976543210 00000000 00000001 12357999999999999
Q ss_pred CCcceeEEE
Q 018405 336 GFKGVNYEY 344 (356)
Q Consensus 336 Gf~~~~~~~ 344 (356)
||+++++.-
T Consensus 281 Gf~i~~~~G 289 (322)
T PLN02396 281 SVDVKEMAG 289 (322)
T ss_pred CCeEEEEee
Confidence 999988744
No 25
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=5e-15 Score=126.02 Aligned_cols=140 Identities=21% Similarity=0.191 Sum_probs=105.2
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC-
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA- 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~- 252 (356)
+.+++.++ ..+..+|||+|||+|..+..++++ +.+++++|. +.+++.+++. .++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 34555555 456689999999999999999985 568999996 7777766532 458888899877 55544
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
|+|++..++|++++++...++++++++|+|||++++++....++.... .. .....+.+|+.+++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~el~~~~ 160 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT--------VG--------FPFAFKEGELRRYY 160 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC--------CC--------CCCccCHHHHHHHh
Confidence 999999999999888899999999999999999887765543321000 00 01225788999988
Q ss_pred HHcCCcceeE
Q 018405 333 IKAGFKGVNY 342 (356)
Q Consensus 333 ~~aGf~~~~~ 342 (356)
+ ||+++..
T Consensus 161 ~--~~~~~~~ 168 (197)
T PRK11207 161 E--GWEMVKY 168 (197)
T ss_pred C--CCeEEEe
Confidence 7 8987765
No 26
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.63 E-value=1.2e-14 Score=129.32 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=109.2
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCCCCC-CC-cEEE
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFESVP-EA-DTIL 256 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~-~~-D~i~ 256 (356)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ +++.++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 456677676 67789999999999999999999999999999996 8888888765 679999999876323 33 9999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh--hhhhhhhh-cCCCccCCHHHHHHHHH
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI--LDTICLFQ-VPHGRERTKQEYSELAI 333 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~t~~e~~~ll~ 333 (356)
+..++|++++ ...+|++++++|+|||++++.-+.....+........... ....+... .......+..++.+++.
T Consensus 99 ~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~ 176 (258)
T PRK01683 99 ANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALA 176 (258)
T ss_pred EccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHH
Confidence 9999999865 6799999999999999998853211110000000000000 00000000 00123457889999999
Q ss_pred HcCCcc
Q 018405 334 KAGFKG 339 (356)
Q Consensus 334 ~aGf~~ 339 (356)
++|+.+
T Consensus 177 ~~g~~v 182 (258)
T PRK01683 177 PAACRV 182 (258)
T ss_pred hCCCce
Confidence 999875
No 27
>PRK08317 hypothetical protein; Provisional
Probab=99.62 E-value=1.6e-14 Score=127.03 Aligned_cols=157 Identities=18% Similarity=0.247 Sum_probs=111.9
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-- 252 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-- 252 (356)
.+++.+. +.+..+|||+|||+|.++..++..+ |..+++++|. +..++.+++. .+++++..|+.. +++..
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3445555 7788999999999999999999988 7889999996 7766666442 568899999876 55543
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCc-hhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENS-ATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
|+|++.++++|+++ ...++++++++|+|||++++.++......... ...........+. .. .....+..+|.++
T Consensus 89 D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS--DH-FADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH--hc-CCCCcHHHHHHHH
Confidence 99999999999976 68899999999999999999886432211000 0001111111111 01 2233466789999
Q ss_pred HHHcCCcceeEEEc
Q 018405 332 AIKAGFKGVNYEYG 345 (356)
Q Consensus 332 l~~aGf~~~~~~~~ 345 (356)
++++||..+.+...
T Consensus 164 l~~aGf~~~~~~~~ 177 (241)
T PRK08317 164 FREAGLTDIEVEPY 177 (241)
T ss_pred HHHcCCCceeEEEE
Confidence 99999998876543
No 28
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.62 E-value=3.2e-14 Score=118.50 Aligned_cols=161 Identities=16% Similarity=0.101 Sum_probs=120.9
Q ss_pred CCc-eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC------CCCCc-eEEEccCCCC-CC---------CC-
Q 018405 193 HVK-KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP------SYLGI-EHVGGDFFES-VP---------EA- 252 (356)
Q Consensus 193 ~~~-~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v-~~~~~D~~~~-~~---------~~- 252 (356)
... +|||||+|||.++..+++.+|+++..--|. +....... ..+++ .-+..|+.++ ++ ..
T Consensus 24 ~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~ 103 (204)
T PF06080_consen 24 DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESF 103 (204)
T ss_pred ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCc
Confidence 444 599999999999999999999999877774 22211111 11333 2345666652 22 13
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
|+|++.+++|..+.+.+..+++.+.++|+|||.|+++.++..+..-.. .-...||-......+....|..+++.++.
T Consensus 104 D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v~~lA 180 (204)
T PF06080_consen 104 DAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDVEALA 180 (204)
T ss_pred ceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHHHHHH
Confidence 999999999999999999999999999999999999999887653222 12234554444333456789999999999
Q ss_pred HHcCCcceeEEEccCceeEEEEeC
Q 018405 333 IKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 333 ~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
+++||+..+.+.++.++-+++++|
T Consensus 181 ~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 181 AAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHCCCccCcccccCCCCeEEEEeC
Confidence 999999999999998888777765
No 29
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.62 E-value=1.1e-14 Score=130.67 Aligned_cols=145 Identities=19% Similarity=0.286 Sum_probs=109.5
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEecc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKW 259 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~ 259 (356)
+++..+|||||||+|..+..+++.. +..+++++|. +.+++.++++ ++++++.+|+.+ ++++. |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5678899999999999888777654 5668999996 8888877642 578999999887 66553 9999999
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKG 339 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 339 (356)
++|++++ ..++|++++++|+|||++++.+....... . ... ..+..+...+ .+...+.++|.++++++||..
T Consensus 155 v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~---~~~--~~~~~~~~~~-~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGEL-P---EEI--RNDAELYAGC-VAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCC-C---HHH--HHhHHHHhcc-ccCCCCHHHHHHHHHHCCCCc
Confidence 9999865 67899999999999999999987754321 1 111 1111121111 234568899999999999999
Q ss_pred eeEEE
Q 018405 340 VNYEY 344 (356)
Q Consensus 340 ~~~~~ 344 (356)
+++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 87644
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.61 E-value=1.8e-15 Score=116.90 Aligned_cols=98 Identities=21% Similarity=0.339 Sum_probs=82.3
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccC-CC-CCCCC-cEEEecc-c
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDF-FE-SVPEA-DTILMKW-V 260 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~-~~-~~~~~-D~i~~~~-v 260 (356)
+..+|||||||+|.++..+++.+|+.+++++|. |.+++.++++ ++++++.+|+ .. ..++. |+|++.. +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 467999999999999999999999999999996 8887776542 7899999999 33 33334 9999999 6
Q ss_pred ccCCCh-HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 261 LSSFDD-EQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 261 lh~~~~-~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+|++.+ ++..++|+++++.|+|||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 775543 578899999999999999999864
No 31
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.58 E-value=1.2e-14 Score=128.93 Aligned_cols=157 Identities=17% Similarity=0.123 Sum_probs=106.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--CCCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--SVPE 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~~~ 251 (356)
..+++.++ .++.+|||||||+|.++..+++. +.+++++|. +.+++.++++ ++++++.+|+.+ +.+.
T Consensus 35 ~~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~ 110 (255)
T PRK11036 35 DRLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLE 110 (255)
T ss_pred HHHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcC
Confidence 34555554 45679999999999999999986 468999996 8888877643 468899998865 2333
Q ss_pred -C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCch-hhhhhhh-hhhhh---hhhcCCCccCC
Q 018405 252 -A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSA-TSREISI-LDTIC---LFQVPHGRERT 324 (356)
Q Consensus 252 -~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~-~~~~~~~-~~~~~---~~~~~~~~~~t 324 (356)
. |+|++..++||+++ ...+|++++++|+|||++++............. ...+... ..+.. .... .....+
T Consensus 111 ~~fD~V~~~~vl~~~~~--~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~ 187 (255)
T PRK11036 111 TPVDLILFHAVLEWVAD--PKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLD 187 (255)
T ss_pred CCCCEEEehhHHHhhCC--HHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCC
Confidence 3 99999999999965 579999999999999999987543321000000 0000000 00000 0000 122357
Q ss_pred HHHHHHHHHHcCCcceeEEEc
Q 018405 325 KQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 325 ~~e~~~ll~~aGf~~~~~~~~ 345 (356)
++++.++++++||+++...-.
T Consensus 188 ~~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 188 PEQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHHHCCCeEeeeeeE
Confidence 899999999999999865544
No 32
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=118.48 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=122.7
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCCCCCC--CcEEE
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFESVPE--ADTIL 256 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~~--~D~i~ 256 (356)
+..++..++ .....+|+|+|||+|..+..|++++|...++++|. +.|++.|+++ ++++|..+|+.+..|+ .|+++
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 457777787 88899999999999999999999999999999995 9999998765 8999999999985553 49999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc---CCCccCCHHHHHHHHH
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV---PHGRERTKQEYSELAI 333 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~t~~e~~~ll~ 333 (356)
.+.+||.++| -.++|.++...|.|||.|.+.=+-.-+.+............-+...... ......+...+-++|.
T Consensus 98 aNAvlqWlpd--H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa 175 (257)
T COG4106 98 ANAVLQWLPD--HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLA 175 (257)
T ss_pred hhhhhhhccc--cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhC
Confidence 9999999976 6899999999999999999954332222111000000000000000000 1234458899999999
Q ss_pred HcCCcceeEEE------ccCceeEEEEeC
Q 018405 334 KAGFKGVNYEY------GACNLYVMEFLK 356 (356)
Q Consensus 334 ~aGf~~~~~~~------~~~~~~vi~~~~ 356 (356)
..+-++ .++. +.+...++|.+|
T Consensus 176 ~~~~rv-DiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 176 PLACRV-DIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred ccccee-eeeeeeccccCCCccchhhhee
Confidence 887654 3332 235566776654
No 33
>PRK06922 hypothetical protein; Provisional
Probab=99.58 E-value=1.7e-14 Score=138.95 Aligned_cols=142 Identities=22% Similarity=0.322 Sum_probs=105.3
Q ss_pred CChhhhhccCchHHHHHHHHHhhhhHH--HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHH
Q 018405 153 MSIYDYMGVDSRFNDVFNTGMLGHTCV--VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVI 229 (356)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~ 229 (356)
..+|+++...++..+.|...|...... ........++ +.+..+|||||||+|..+..+++.+|+.+++++|+ +.++
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML 455 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI 455 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 356777777766666665544332111 1111122233 55778999999999999999999999999999997 7778
Q ss_pred HhCCCC-----CCceEEEccCCC-C--CCCC--cEEEecccccCC-----------ChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 230 KNAPSY-----LGIEHVGGDFFE-S--VPEA--DTILMKWVLSSF-----------DDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 230 ~~a~~~-----~~v~~~~~D~~~-~--~~~~--D~i~~~~vlh~~-----------~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
+.++++ .+++++.+|..+ + +++. |+|+++.++|+| ++++..++|++++++|||||++++
T Consensus 456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 777543 357788899876 4 4433 999999999986 346789999999999999999999
Q ss_pred EecccCC
Q 018405 289 VNVTIPE 295 (356)
Q Consensus 289 ~e~~~~~ 295 (356)
.|.+.++
T Consensus 536 ~D~v~~E 542 (677)
T PRK06922 536 RDGIMTE 542 (677)
T ss_pred EeCccCC
Confidence 9976554
No 34
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=2.2e-15 Score=123.07 Aligned_cols=139 Identities=27% Similarity=0.334 Sum_probs=100.4
Q ss_pred CCCceEEEEcCCccHHHHHHH-HhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC-cEEEecc
Q 018405 192 EHVKKLVDVGGGLGATLNMII-SKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA-DTILMKW 259 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~-D~i~~~~ 259 (356)
++..+|||+|||+|.++..++ ...|+.+++++|. +.+++.++.. +++++..+|+.+ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5678999999996 8888888752 689999999999 5 3334 9999999
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG 336 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 336 (356)
++|++++ ...+|+++.++|+|+|.+++.+........ ........ +..........+. ..++|..++++||
T Consensus 82 ~l~~~~~--~~~~l~~~~~~lk~~G~~i~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPD--PEKVLKNIIRLLKPGGILIISDPNHNDELP-EQLEELMN-LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSH--HHHHHHHHHHHEEEEEEEEEEEEEHSHHHH-HHHHHHHH-HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccC--HHHHHHHHHHHcCCCcEEEEEECChHHHHH-HHHHHHHH-HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 9999966 679999999999999999998887322100 00000000 0111111111111 7889999999998
No 35
>PRK05785 hypothetical protein; Provisional
Probab=99.57 E-value=9.8e-14 Score=120.47 Aligned_cols=156 Identities=15% Similarity=0.096 Sum_probs=106.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ 268 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~ 268 (356)
+..+|||||||+|..+..+++.+ +.+++++|. +.+++.++.. ..++.+|+.+ |+++. |+|++..++||++|
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d-- 125 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDN-- 125 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCC--
Confidence 46899999999999999999887 578999996 9999988754 3567889888 77765 99999999999965
Q ss_pred HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCC-------------ccCCHHHHHHHHHHc
Q 018405 269 SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHG-------------RERTKQEYSELAIKA 335 (356)
Q Consensus 269 ~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~t~~e~~~ll~~a 335 (356)
..++|++++++|+| .+.++|...++..-......++...-+..+...-.+ ...+.+++.++++++
T Consensus 126 ~~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~ 203 (226)
T PRK05785 126 IEKVIAEFTRVSRK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKY 203 (226)
T ss_pred HHHHHHHHHHHhcC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999 344556554432100000001110011111110011 124889999999998
Q ss_pred CCcceeEEEccCc-eeEEEEeC
Q 018405 336 GFKGVNYEYGACN-LYVMEFLK 356 (356)
Q Consensus 336 Gf~~~~~~~~~~~-~~vi~~~~ 356 (356)
| ..++......+ ..++.++|
T Consensus 204 ~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 204 A-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred h-CceEEEEccccEEEEEEEee
Confidence 4 66777776544 44666654
No 36
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.56 E-value=8.2e-14 Score=118.36 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=101.7
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---C--CceEEEccCCC-CCCCC-cE
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---L--GIEHVGGDFFE-SVPEA-DT 254 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v~~~~~D~~~-~~~~~-D~ 254 (356)
.+++.+. ..++.+|||+|||+|..+..++++ +.+++++|. +.+++.+++. . .+.+...|+.. +.+.. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4444454 445689999999999999999984 568999996 7777765432 1 36677778765 44444 99
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIK 334 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~ 334 (356)
|++..++|+++.++...++++++++|+|||++++++....+.... .. +.....+++++.++|+
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~--------~~--------~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC--------HM--------PFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC--------CC--------CcCccCCHHHHHHHhC-
Confidence 999999999988888999999999999999988877654322100 00 0122367899999886
Q ss_pred cCCcceeEE
Q 018405 335 AGFKGVNYE 343 (356)
Q Consensus 335 aGf~~~~~~ 343 (356)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 58777655
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.55 E-value=2.2e-13 Score=119.26 Aligned_cols=147 Identities=16% Similarity=0.088 Sum_probs=102.0
Q ss_pred CCCCceEEEEcCCccHHHHHHHHh----CCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCC-C-cEEEecc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISK----YPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPE-A-DTILMKW 259 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~-~-D~i~~~~ 259 (356)
..+..+|||||||+|.++..+++. .|+.+++++|. +.+++.+++. .++++...+... +.++ . |+|+++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 356789999999999998888764 45679999996 8888887654 457777665544 3333 3 9999999
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhh-h-h-cCC-----CccCCHHHHHHH
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICL-F-Q-VPH-----GRERTKQEYSEL 331 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~-----~~~~t~~e~~~l 331 (356)
++||+++++...+|++++++++ |.+++.+...+.. ............. . . ..+ ...+|++|+.++
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l 210 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-----AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL 210 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-----HHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH
Confidence 9999998888899999999998 6677766554321 0000000000000 0 0 001 134689999999
Q ss_pred HHHcCCcceeEEEc
Q 018405 332 AIKAGFKGVNYEYG 345 (356)
Q Consensus 332 l~~aGf~~~~~~~~ 345 (356)
+++ ||++....+.
T Consensus 211 l~~-Gf~~~~~~~~ 223 (232)
T PRK06202 211 APQ-GWRVERQWPF 223 (232)
T ss_pred hhC-CCeEEeccce
Confidence 999 9998776665
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=1.7e-13 Score=120.40 Aligned_cols=136 Identities=19% Similarity=0.254 Sum_probs=103.9
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CCCCC--cEEEecccccCCCh
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDD 266 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~ 266 (356)
.+.+|||||||+|.++..+++.+|..+++++|. +.+++.++.. ++++++.+|+.+ ++++. |+|++.+++|+.++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457999999999999999999999999999996 7777666543 478999999987 55543 99999999999855
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 267 EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 267 ~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
...+|++++++|+|||++++.++..... .. ..... .. ......+.++|.+++.++ |+.+...
T Consensus 114 --~~~~l~~~~~~L~~~G~l~~~~~~~~~~------~~---~~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 114 --LSQALSELARVLKPGGLLAFSTFGPGTL------HE---LRQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHHcCCCcEEEEEeCCccCH------HH---HHHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 6899999999999999999986544321 00 11110 00 134456889999999988 8876543
No 39
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.54 E-value=2.2e-13 Score=120.93 Aligned_cols=109 Identities=21% Similarity=0.290 Sum_probs=86.0
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccH----HHHHHHHhCC-----CCeEEEccc-hHHHHhCCCC---------------
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGA----TLNMIISKYP-----RIKGINYDL-PYVIKNAPSY--------------- 235 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------- 235 (356)
.+.+++... ..+..+|+|+|||+|. ++..+.+.++ +.++++.|+ +.+++.|++.
T Consensus 88 lp~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~ 166 (264)
T smart00138 88 LPLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALL 166 (264)
T ss_pred hHHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHH
Confidence 344444332 3456899999999996 4555666554 578999996 8888877652
Q ss_pred ------------------CCceEEEccCCC-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 236 ------------------LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 236 ------------------~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
.+|+|..+|+.+ +.+.. |+|+|.++|||+++++..+++++++++|+|||++++-.
T Consensus 167 ~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 167 ARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred hhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 268999999998 44333 99999999999998888999999999999999999954
No 40
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.54 E-value=1e-13 Score=113.37 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=120.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCc
Q 018405 166 NDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGI 238 (356)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v 238 (356)
...|++.|..+.+.....+-. +-..+....||+||||||..-... .--|..+++.+|. +.+-+.+.+. .++
T Consensus 50 t~~yne~~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HhcccCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 456677776665544444332 222455678999999999876532 3337889999995 7776555332 456
Q ss_pred e-EEEccCCC-C-CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh
Q 018405 239 E-HVGGDFFE-S-VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC 313 (356)
Q Consensus 239 ~-~~~~D~~~-~-~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~ 313 (356)
. |+.++..+ + .+++ |+|++..+|+-. ++.++.|++++++|+|||+++++|.+..+...- ........+...
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~--n~i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW--NRILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEecccccchHH--HHHHHHHhchhh
Confidence 6 88888887 4 4555 999999999977 568999999999999999999999987654211 111122222211
Q ss_pred hhhcCCCccCCHHHHHHHHHHcCCcceeEEEccCcee
Q 018405 314 LFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLY 350 (356)
Q Consensus 314 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~ 350 (356)
... ..|...|++.| +.|++|-|+..+......+..
T Consensus 204 ~~~-~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~tt 238 (252)
T KOG4300|consen 204 HLE-SDGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTT 238 (252)
T ss_pred hee-ccceEEehhHH-HHhhhcccccchhhcccCCce
Confidence 111 25666788777 566899999998877665543
No 41
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=1.2e-14 Score=108.48 Aligned_cols=88 Identities=23% Similarity=0.400 Sum_probs=76.1
Q ss_pred EEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--cEEEecccccCCChHHHH
Q 018405 198 VDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSL 270 (356)
Q Consensus 198 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~ 270 (356)
||+|||+|..+..+++. +..+++++|. +.+++.+++. .++.++.+|+.+ ++++. |+|++.+++||+ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 89999999999999998 8899999996 7777777653 457799999998 77765 999999999999 5589
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 018405 271 KLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 271 ~~L~~~~~~L~pgG~lii 288 (356)
+++++++++|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
No 42
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.53 E-value=3.5e-13 Score=119.45 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--
Q 018405 178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-- 252 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-- 252 (356)
+.....+++.++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.++.+ ..+.++.+|+.+ ++++.
T Consensus 28 ~~~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~f 104 (251)
T PRK10258 28 RQSADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATF 104 (251)
T ss_pred HHHHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcE
Confidence 334556666666 445789999999999999888763 578999997 8888888765 346789999987 66654
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
|+|+++.++|+.++ ...+|++++++|+|||.+++......... .........-.. .......+.++|.+++
T Consensus 105 D~V~s~~~l~~~~d--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~------el~~~~~~~~~~-~~~~~~~~~~~l~~~l 175 (251)
T PRK10258 105 DLAWSNLAVQWCGN--LSTALRELYRVVRPGGVVAFTTLVQGSLP------ELHQAWQAVDER-PHANRFLPPDAIEQAL 175 (251)
T ss_pred EEEEECchhhhcCC--HHHHHHHHHHHcCCCeEEEEEeCCCCchH------HHHHHHHHhccC-CccccCCCHHHHHHHH
Confidence 99999999998755 78999999999999999999776543211 110010000000 0123456899999999
Q ss_pred HHcCCcc
Q 018405 333 IKAGFKG 339 (356)
Q Consensus 333 ~~aGf~~ 339 (356)
.+.|+..
T Consensus 176 ~~~~~~~ 182 (251)
T PRK10258 176 NGWRYQH 182 (251)
T ss_pred HhCCcee
Confidence 9988764
No 43
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.53 E-value=2.4e-13 Score=117.90 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=102.1
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCCcEEEeccccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEADTILMKWVLS 262 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~vlh 262 (356)
..+..+|||||||+|.++..+++. +.+++++|. +.++..++++ .++.+..+|+.+.....|+|++..+++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~ 130 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLI 130 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHH
Confidence 346789999999999999999875 458899996 8888777543 378999999877333349999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh--cCCCccCCHHHHHHHHHHcCCcce
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ--VPHGRERTKQEYSELAIKAGFKGV 340 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~ 340 (356)
|+++++...+++++.+.+++++.+.+.. ... . ......+...+... ...-..++.+++.++++++||+++
T Consensus 131 ~~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~ 202 (219)
T TIGR02021 131 HYPASDMAKALGHLASLTKERVIFTFAP----KTA---W-LAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIV 202 (219)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECC----Cch---H-HHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceee
Confidence 9988788899999999988664444321 110 0 00010111000000 011234589999999999999999
Q ss_pred eEEEccC
Q 018405 341 NYEYGAC 347 (356)
Q Consensus 341 ~~~~~~~ 347 (356)
.......
T Consensus 203 ~~~~~~~ 209 (219)
T TIGR02021 203 REGLVST 209 (219)
T ss_pred eeecccc
Confidence 8876543
No 44
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.51 E-value=4e-13 Score=125.33 Aligned_cols=155 Identities=12% Similarity=0.144 Sum_probs=114.4
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCCCCCCCcEEE
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFESVPEADTIL 256 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~~~~D~i~ 256 (356)
...+++.+. +++..+|||||||+|.++..+++.+ +.+++++|+ +.+++.++++ ..+++...|+.+.....|+|+
T Consensus 156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 455666666 7788999999999999999998875 678999996 8888777643 247777788765322339999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG 336 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 336 (356)
+..+++|+++++...++++++++|+|||++++.+...+...... ..+..-. .+|++..++.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~y---ifp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINKY---IFPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCceee---ecCCCcCCCHHHHHHHHH-CC
Confidence 99999999877788999999999999999999876554321110 0111111 135777889999888766 58
Q ss_pred CcceeEEEcc
Q 018405 337 FKGVNYEYGA 346 (356)
Q Consensus 337 f~~~~~~~~~ 346 (356)
|.+.++....
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9887766543
No 45
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.51 E-value=2.4e-13 Score=115.98 Aligned_cols=103 Identities=17% Similarity=0.364 Sum_probs=88.9
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCCCCCCC--cEEEecccccCCCh
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFESVPEA--DTILMKWVLSSFDD 266 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~~~--D~i~~~~vlh~~~~ 266 (356)
..+..+|||||||+|..+..+++..|+.+++++|. +.+++.|++. +++.+..+|+.+++++. |+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34678999999999999999999889999999996 8899998764 67889999988866554 99999999999988
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 267 EQSLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 267 ~~~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
++..++++++++++ ++.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 88899999999997 4788888886554
No 46
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.50 E-value=5.6e-14 Score=119.41 Aligned_cols=141 Identities=17% Similarity=0.126 Sum_probs=102.6
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------C----CceEEEccCCCCCCCCcEEEeccc
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------L----GIEHVGGDFFESVPEADTILMKWV 260 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~D~~~~~~~~D~i~~~~v 260 (356)
+++|||||||+|.++..|++. +..++++|. +.+++.|+.. . ++++...|.+...+..|+|+|..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 378999999999999999985 478999996 8888888654 2 366667777665555799999999
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC-----CccCCHHHHHHHHHHc
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH-----GRERTKQEYSELAIKA 335 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~t~~e~~~ll~~a 335 (356)
+||. ++...+++.+.+.|+|||+++|......-.. ......++-..+...|. .+..+++++.+++..+
T Consensus 168 leHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS-----~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 168 LEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILS-----FAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred HHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHH-----hhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 9999 4589999999999999999999765433210 00011111111111122 3456899999999999
Q ss_pred CCcceeEE
Q 018405 336 GFKGVNYE 343 (356)
Q Consensus 336 Gf~~~~~~ 343 (356)
|+++..+.
T Consensus 241 ~~~v~~v~ 248 (282)
T KOG1270|consen 241 GAQVNDVV 248 (282)
T ss_pred Ccchhhhh
Confidence 99887654
No 47
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.49 E-value=7.2e-15 Score=110.85 Aligned_cols=87 Identities=28% Similarity=0.466 Sum_probs=59.4
Q ss_pred EEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CC---ceEEEccCCCCCC-CC-cEEEecccccCCC
Q 018405 198 VDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LG---IEHVGGDFFESVP-EA-DTILMKWVLSSFD 265 (356)
Q Consensus 198 LDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~---v~~~~~D~~~~~~-~~-D~i~~~~vlh~~~ 265 (356)
||||||+|.++..+++.+|..+++++|. +.+++.++++ .. +++...|.....+ +. |+|++.+++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 7999999999999999999999999996 8888777765 12 3333344433222 23 999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCCEE
Q 018405 266 DEQSLKLLKNCYKALPDGGKL 286 (356)
Q Consensus 266 ~~~~~~~L~~~~~~L~pgG~l 286 (356)
++...+|+++++.|+|||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 45889999999999999986
No 48
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.49 E-value=3.9e-13 Score=130.06 Aligned_cols=144 Identities=18% Similarity=0.257 Sum_probs=109.4
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC---CCCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE---SVPEA 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~---~~~~~ 252 (356)
...+++.++ ..+..+|||||||+|.++..+++.. .+++++|. +.+++.++. .++++++.+|+.. +++..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 355666665 4566799999999999999999875 37899996 777776542 2578999999864 44543
Q ss_pred --cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405 253 --DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE 330 (356)
Q Consensus 253 --D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 330 (356)
|+|++..++||+++++..++|+++++.|+|||++++.|......... ....+ ....++...|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~------~~~~~--------~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS------KRKNN--------PTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc------cccCC--------CCeecChHHHHH
Confidence 99999999999998888999999999999999999998765432110 00000 122356889999
Q ss_pred HHHHcCCccee
Q 018405 331 LAIKAGFKGVN 341 (356)
Q Consensus 331 ll~~aGf~~~~ 341 (356)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998764
No 49
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.48 E-value=3.8e-14 Score=119.70 Aligned_cols=143 Identities=19% Similarity=0.165 Sum_probs=103.1
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CC--ceEEEccCCC-CCC--CCcEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LG--IEHVGGDFFE-SVP--EADTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~--v~~~~~D~~~-~~~--~~D~i~~~~vlh~ 263 (356)
...+|||||||.|.++..+++. +..++++|. ++.++.|+.+ +. +++.+...++ ... ..|+|+|..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 5689999999999999999995 488999996 8889988754 33 3466655554 222 3499999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh-hhhhhcCC-----CccCCHHHHHHHHHHcCC
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT-ICLFQVPH-----GRERTKQEYSELAIKAGF 337 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~t~~e~~~ll~~aGf 337 (356)
.++ ...+++.|.+.+||||.+++....... .......+.. ..+.+.|. .+...++|+..++.++|+
T Consensus 137 v~d--p~~~~~~c~~lvkP~G~lf~STinrt~------ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPD--PESFLRACAKLVKPGGILFLSTINRTL------KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCC--HHHHHHHHHHHcCCCcEEEEeccccCH------HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 977 577999999999999999997665322 1222222211 11111223 234578999999999999
Q ss_pred cceeEEEc
Q 018405 338 KGVNYEYG 345 (356)
Q Consensus 338 ~~~~~~~~ 345 (356)
.+.....+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 98876554
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.48 E-value=8.5e-13 Score=111.57 Aligned_cols=125 Identities=17% Similarity=0.244 Sum_probs=95.9
Q ss_pred HHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCCC-cEEE
Q 018405 185 LESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPEA-DTIL 256 (356)
Q Consensus 185 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~-D~i~ 256 (356)
+..+. ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|...+.++. |+|+
T Consensus 24 ~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~ 102 (187)
T PRK08287 24 LSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIF 102 (187)
T ss_pred HHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEE
Confidence 34454 66788999999999999999999999999999996 7777776542 46888888876544443 9999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG 336 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 336 (356)
+....++ ...+++.+++.|+|||++++..... .+.+++.+++++.|
T Consensus 103 ~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~-----------------------------~~~~~~~~~l~~~g 148 (187)
T PRK08287 103 IGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILL-----------------------------ENLHSALAHLEKCG 148 (187)
T ss_pred ECCCccC-----HHHHHHHHHHhcCCCeEEEEEEecH-----------------------------hhHHHHHHHHHHCC
Confidence 9876554 3568999999999999998843211 12467778999999
Q ss_pred CcceeEEE
Q 018405 337 FKGVNYEY 344 (356)
Q Consensus 337 f~~~~~~~ 344 (356)
|+.+++..
T Consensus 149 ~~~~~~~~ 156 (187)
T PRK08287 149 VSELDCVQ 156 (187)
T ss_pred CCcceEEE
Confidence 98776543
No 51
>PRK04266 fibrillarin; Provisional
Probab=99.47 E-value=3.2e-12 Score=110.44 Aligned_cols=142 Identities=17% Similarity=0.112 Sum_probs=97.2
Q ss_pred HhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHH----hCCCCCCceEEEccCCCC-----CCCC-cEE
Q 018405 187 SYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIK----NAPSYLGIEHVGGDFFES-----VPEA-DTI 255 (356)
Q Consensus 187 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~~~~-D~i 255 (356)
.++ +++..+|||+|||+|.++..+++..+.-+++++|. +.+++ .++..+++.++.+|...+ .++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 355 77889999999999999999999887668999996 75554 444457899999998653 1233 888
Q ss_pred EecccccCCChH-HHHHHHHHHHHhCCCCCEEEEE-ecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018405 256 LMKWVLSSFDDE-QSLKLLKNCYKALPDGGKLLNV-NVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAI 333 (356)
Q Consensus 256 ~~~~vlh~~~~~-~~~~~L~~~~~~L~pgG~lii~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 333 (356)
++ +.+++ ....+|+++++.|||||+++|. ... +- ++.. ... +..++..++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~-~~--------------d~~~-----~~~-~~~~~~~~~l~ 199 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKAR-SI--------------DVTK-----DPK-EIFKEEIRKLE 199 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEecc-cc--------------cCcC-----CHH-HHHHHHHHHHH
Confidence 74 34333 3456789999999999999994 321 00 0000 000 11234459999
Q ss_pred HcCCcceeEEEccC---ceeEEEEe
Q 018405 334 KAGFKGVNYEYGAC---NLYVMEFL 355 (356)
Q Consensus 334 ~aGf~~~~~~~~~~---~~~vi~~~ 355 (356)
++||+.++...... ++..+.++
T Consensus 200 ~aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 200 EGGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred HcCCeEEEEEcCCCCcCCeEEEEEE
Confidence 99999998877643 25555443
No 52
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.46 E-value=9.7e-13 Score=118.68 Aligned_cols=132 Identities=22% Similarity=0.181 Sum_probs=99.3
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~ 263 (356)
.++.+|||||||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.. +.++. |+|++..++|+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999884 578999996 7777765432 257788888877 44444 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
+++++...+++++++.|+|||++++++....+.... . .+....++++|+.++++. |++++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~----------~------~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC----------P------MPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC----------C------CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 988889999999999999999988876554332110 0 011223678899999864 8877653
No 53
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.46 E-value=2e-12 Score=113.01 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=99.5
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCCcEEEeccccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEADTILMKWVLS 262 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~vlh 262 (356)
..+..+|||||||+|.++..+++.. .+++++|. +.+++.++++ +++.+..+|+.......|+|++..++|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 3466899999999999999999865 45899996 7777777543 378999999433322349999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh-hhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC-LFQVPHGRERTKQEYSELAIKAGFKGVN 341 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 341 (356)
|+++++...+++++.+.+++++ ++..... .. ...........+. ..........+.++|.++++++||++.+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~-~i~~~~~---~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 211 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSL-IFTFAPY---TP---LLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVR 211 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeE-EEEECCc---cH---HHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEe
Confidence 9998889999999999775433 3332211 10 0000000000000 0000122345789999999999999999
Q ss_pred EEEccCc
Q 018405 342 YEYGACN 348 (356)
Q Consensus 342 ~~~~~~~ 348 (356)
+.+...+
T Consensus 212 ~~~~~~~ 218 (230)
T PRK07580 212 TERISSG 218 (230)
T ss_pred eeeccch
Confidence 8776543
No 54
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.45 E-value=1e-12 Score=115.08 Aligned_cols=153 Identities=17% Similarity=0.106 Sum_probs=102.5
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHh------CCCCC-CceEEEccCCC-CCCCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKN------APSYL-GIEHVGGDFFE-SVPEA 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~------a~~~~-~v~~~~~D~~~-~~~~~ 252 (356)
..+...++.+ .+++|||||||.|.++.+++.+.|. .++++|. +....+ ....+ .+.+...-+.+ +....
T Consensus 105 ~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315)
T PF08003_consen 105 DRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315)
T ss_pred HHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC
Confidence 3444445423 5689999999999999999997654 5889993 332222 11112 23333223333 33333
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC-CccCCHHHHHH
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH-GRERTKQEYSE 330 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~~e~~~ 330 (356)
|+|+|..||+|..+ ....|+.+++.|+|||.+++-..+.+.+......+. ..+-.| +| -..+|...+..
T Consensus 183 FDtVF~MGVLYHrr~--Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~---~rYa~m----~nv~FiPs~~~L~~ 253 (315)
T PF08003_consen 183 FDTVFSMGVLYHRRS--PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE---DRYAKM----RNVWFIPSVAALKN 253 (315)
T ss_pred cCEEEEeeehhccCC--HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC---CcccCC----CceEEeCCHHHHHH
Confidence 99999999999966 799999999999999999997777765433221110 011111 11 23468999999
Q ss_pred HHHHcCCcceeEEEc
Q 018405 331 LAIKAGFKGVNYEYG 345 (356)
Q Consensus 331 ll~~aGf~~~~~~~~ 345 (356)
|++++||+.++++..
T Consensus 254 wl~r~gF~~v~~v~~ 268 (315)
T PF08003_consen 254 WLERAGFKDVRCVDV 268 (315)
T ss_pred HHHHcCCceEEEecC
Confidence 999999999998765
No 55
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.44 E-value=3.5e-12 Score=107.01 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=103.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCC-CCcEEEecccccCCC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVP-EADTILMKWVLSSFD 265 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~-~~D~i~~~~vlh~~~ 265 (356)
+..+|||+|||+|.++..+++..+ +++++|. +.+++.++++ .+++++.+|..+..+ ..|+|+++...|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999876 8999996 8887776543 357888899877333 349999998887765
Q ss_pred hH-------------------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHH
Q 018405 266 DE-------------------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQ 326 (356)
Q Consensus 266 ~~-------------------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 326 (356)
++ -...+|+++.+.|+|||++++++.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 32 135789999999999999999763221 246
Q ss_pred HHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 327 EYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 327 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
++.+.+++.||+...+.....++-.+.++|
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 788999999999998888777766666654
No 56
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.44 E-value=1e-13 Score=104.89 Aligned_cols=88 Identities=22% Similarity=0.392 Sum_probs=72.9
Q ss_pred EEEEcCCccHHHHHHHHhC---CCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--cEEEec-ccccC
Q 018405 197 LVDVGGGLGATLNMIISKY---PRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA--DTILMK-WVLSS 263 (356)
Q Consensus 197 vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D~i~~~-~vlh~ 263 (356)
|||+|||+|..+..+.+.+ |..+++++|+ +.+++.++++ .++++++.|+.+ ++... |+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999996 8888877653 478999999988 54443 999995 55999
Q ss_pred CChHHHHHHHHHHHHhCCCCC
Q 018405 264 FDDEQSLKLLKNCYKALPDGG 284 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG 284 (356)
+++++..++|+++.+.|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999997
No 57
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=1e-12 Score=110.30 Aligned_cols=145 Identities=25% Similarity=0.319 Sum_probs=105.7
Q ss_pred ceEEEEcCCccHHHHHHHHhCCC--CeEEEccc-hHHHHhCCCC-----CCceEEEccCCCC-----CCCC--cEEEecc
Q 018405 195 KKLVDVGGGLGATLNMIISKYPR--IKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFES-----VPEA--DTILMKW 259 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~-----~~~~--D~i~~~~ 259 (356)
.+||+||||.|....-+++..|+ +++..+|. |..++..++. .++..-+.|+..+ .+.+ |+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999988 89999996 8888777654 3555555666542 2233 9999999
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCC---ccCCHHHHHHHHHHcC
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHG---RERTKQEYSELAIKAG 336 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~~e~~~ll~~aG 336 (356)
+|..++.+....++++++++|||||.|++.|....+-.... ......++-..... ..| ...+.+++.+++++||
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR--F~~~~~i~~nfYVR-gDGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR--FKKGQCISENFYVR-GDGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh--ccCCceeecceEEc-cCCceeeeccHHHHHHHHHhcc
Confidence 99999999999999999999999999999987654321000 00011111111111 122 3458999999999999
Q ss_pred CcceeE
Q 018405 337 FKGVNY 342 (356)
Q Consensus 337 f~~~~~ 342 (356)
|..++.
T Consensus 230 f~~~~~ 235 (264)
T KOG2361|consen 230 FEEVQL 235 (264)
T ss_pred cchhcc
Confidence 988764
No 58
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.42 E-value=1.7e-12 Score=117.74 Aligned_cols=104 Identities=16% Similarity=0.302 Sum_probs=81.4
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-----CC--ceEEEccCCCC--CC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-----LG--IEHVGGDFFES--VP 250 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-----~~--v~~~~~D~~~~--~~ 250 (356)
..+++.++ +..+|||+|||+|..+..|+++.+ ..+++++|+ +.+++.+.++ ++ +.++.+|+.+. .+
T Consensus 55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP 131 (301)
T ss_pred HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh
Confidence 34444443 567899999999999999999987 688999996 7777666432 33 56688999762 22
Q ss_pred C-----C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 251 E-----A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 251 ~-----~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
. . .++++..+++++++++...+|+++++.|+|||.+++
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 2 355666889999999999999999999999999986
No 59
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.41 E-value=3.2e-12 Score=112.02 Aligned_cols=147 Identities=17% Similarity=0.072 Sum_probs=98.8
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-C--CCCC-cEEEeccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-S--VPEA-DTILMKWV 260 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~~~~-D~i~~~~v 260 (356)
..+..+|||||||+|.++..+++. ..+++++|. +..++.++++ .+++++..|+.+ + .+.. |+|++.++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 446789999999999999988875 467899996 6766666532 346777777665 2 2223 99999999
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhh-hhhhhhhhhhc--CCCccCCHHHHHHHHHHcCC
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI-SILDTICLFQV--PHGRERTKQEYSELAIKAGF 337 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~t~~e~~~ll~~aGf 337 (356)
+++.++ ...+|+++.+.|+|||++++........ ....... ........... ......+.++|.++++++||
T Consensus 124 l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 198 (233)
T PRK05134 124 LEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLK---SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGL 198 (233)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChH---HHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCC
Confidence 999865 6789999999999999999875432110 0000000 00000000000 01234588999999999999
Q ss_pred cceeEEE
Q 018405 338 KGVNYEY 344 (356)
Q Consensus 338 ~~~~~~~ 344 (356)
+++....
T Consensus 199 ~~v~~~~ 205 (233)
T PRK05134 199 EVQDITG 205 (233)
T ss_pred eEeeeee
Confidence 9987754
No 60
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.41 E-value=2.7e-12 Score=116.04 Aligned_cols=146 Identities=12% Similarity=0.059 Sum_probs=94.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCCCCCCCCcEEEeccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFFESVPEADTILMKWV 260 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~~~~~~D~i~~~~v 260 (356)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .++++...|+.+.....|+|+|..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999985 568999996 8888776543 2467888887543222399999999
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh--cCCCccCCHHHHHHHHHHcCCc
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ--VPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
+||++++....+++.+.+. .+||. +|.. .+.. ..........-.+... .......+++++.++++++||+
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~~g~l-iIs~--~p~~----~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~ 293 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-AEKRL-IISF--APKT----LYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWK 293 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-cCCEE-EEEe--CCcc----hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCE
Confidence 9999987777888888864 55544 4422 1111 0000000000000000 0012234799999999999999
Q ss_pred ceeEEEccCc
Q 018405 339 GVNYEYGACN 348 (356)
Q Consensus 339 ~~~~~~~~~~ 348 (356)
+....-....
T Consensus 294 v~~~~~~~~~ 303 (315)
T PLN02585 294 VARREMTATQ 303 (315)
T ss_pred EEEEEEeecc
Confidence 8865544433
No 61
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.38 E-value=9.6e-12 Score=104.10 Aligned_cols=91 Identities=24% Similarity=0.205 Sum_probs=72.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------CCCceEEEccCCC-CCCC-CcEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFE-SVPE-ADTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~~~-~D~i~~~~vlh~ 263 (356)
+..+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ .... .|+|++.. +++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~ 120 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS 120 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence 368999999999999999998889999999996 666654432 2569999999887 3222 39998866 544
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
...+++.+++.|+|||++++.
T Consensus 121 -----~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 121 -----LNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred -----HHHHHHHHHHhcCCCCEEEEE
Confidence 356788899999999999985
No 62
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.38 E-value=1.8e-12 Score=108.54 Aligned_cols=137 Identities=20% Similarity=0.280 Sum_probs=94.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----CCCc-eEEEccCCCCCCC--C-cEEEeccccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----YLGI-EHVGGDFFESVPE--A-DTILMKWVLS 262 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~v-~~~~~D~~~~~~~--~-D~i~~~~vlh 262 (356)
+..+.||+|+|.|..+..++..+ --++-.+|. +..++.|++ .+++ ++.+..+.+-.|+ . |+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999999887633 124555563 777777763 2343 4444444442232 3 9999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeE
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNY 342 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 342 (356)
|++|++..++|++|+++|+|+|.++|-|.+...+. ..+|-. .+.-.|+.+.|.++|++||+++++.
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~~-----DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDEE-----DSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEETT-----TTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCCc-----cCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999998876431 123321 2455689999999999999999975
Q ss_pred EE
Q 018405 343 EY 344 (356)
Q Consensus 343 ~~ 344 (356)
..
T Consensus 200 ~~ 201 (218)
T PF05891_consen 200 EK 201 (218)
T ss_dssp EE
T ss_pred cc
Confidence 44
No 63
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.37 E-value=3.5e-11 Score=100.90 Aligned_cols=117 Identities=22% Similarity=0.177 Sum_probs=90.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA-DTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~ 263 (356)
+..+|||||||+|..+..++...|+.+++++|. +.+++.++++ ++++++.+|+.+ +..+. |+|++...
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 478999999999999999999999999999996 7777766542 458999999877 33323 99998652
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
.....+++.+++.|+|||++++++... ...++.++.++.|+++.+++
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------------------~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD------------------------------PEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------------------hHHHHHHHHHhcCceEeeeE
Confidence 235789999999999999999864221 13456677777798877765
Q ss_pred Ec
Q 018405 344 YG 345 (356)
Q Consensus 344 ~~ 345 (356)
-.
T Consensus 169 ~~ 170 (187)
T PRK00107 169 EL 170 (187)
T ss_pred EE
Confidence 54
No 64
>PLN03075 nicotianamine synthase; Provisional
Probab=99.37 E-value=3.7e-12 Score=112.93 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=80.2
Q ss_pred CCCCceEEEEcCCccHHHHH--HHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCCCC--CC-cEEE
Q 018405 191 FEHVKKLVDVGGGLGATLNM--IISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFESVP--EA-DTIL 256 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~~--~~-D~i~ 256 (356)
..++.+|+|||||.|.++.. ++..+|+.+++++|. +.+++.|++. ++++|+.+|..+..+ .. |+|+
T Consensus 121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF 200 (296)
T PLN03075 121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF 200 (296)
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence 34789999999998854333 335689999999996 8777766542 579999999987332 23 9999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+. ++|+|+.++..++|+++++.|+|||.+++--
T Consensus 201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99 9999987779999999999999999999943
No 65
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.35 E-value=2.5e-12 Score=105.86 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=95.4
Q ss_pred HhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCCCCCCC--cEEEecc
Q 018405 187 SYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFESVPEA--DTILMKW 259 (356)
Q Consensus 187 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~~~~~~--D~i~~~~ 259 (356)
.++ -....+++|+|||.|.++..|+.+.. +.+++|. +..++.|+++ ++|+++..|+-..+|++ |+|+++.
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 466 55678999999999999999998763 6888886 8888877653 78999999998866655 9999999
Q ss_pred cccCCCh-HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405 260 VLSSFDD-EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 260 vlh~~~~-~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
++|++++ ++...+++++.++|+|||.+++..... ..... + |.....+.+.++|.+. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd------------~~c~~-----w---gh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARD------------ANCRR-----W---GHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H------------HHHHH-----T---T-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC------------Ccccc-----c---CcccchHHHHHHHHHH-hh
Confidence 9999985 678899999999999999999977521 01111 1 2223577888888764 44
Q ss_pred ceeEEEc
Q 018405 339 GVNYEYG 345 (356)
Q Consensus 339 ~~~~~~~ 345 (356)
.++.+..
T Consensus 174 ~~~~~~~ 180 (201)
T PF05401_consen 174 EVERVEC 180 (201)
T ss_dssp EEEEEEE
T ss_pred heeEEEE
Confidence 4444443
No 66
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.35 E-value=4.5e-11 Score=102.52 Aligned_cols=132 Identities=15% Similarity=0.132 Sum_probs=98.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------------------CCCceEEEccCCC-CC--
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------------------YLGIEHVGGDFFE-SV-- 249 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~-~~-- 249 (356)
.+..+|||+|||.|..+..|++ .+..++++|+ +..++.+.+ ..+|++.++|+++ +.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4567999999999999999998 4778999996 776766311 2468999999998 32
Q ss_pred -CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405 250 -PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY 328 (356)
Q Consensus 250 -~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 328 (356)
+..|.|+-..++||++.+.....++++.++|+|||+++++....++.... .+ -...+++++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------gp-p~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------GP-PFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------Cc-CCCCCHHHH
Confidence 22399999999999999889999999999999999988876554321100 00 123578899
Q ss_pred HHHHHHcCCcceeEEE
Q 018405 329 SELAIKAGFKGVNYEY 344 (356)
Q Consensus 329 ~~ll~~aGf~~~~~~~ 344 (356)
.++|.. +|.+..+..
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 998863 455554433
No 67
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.30 E-value=1.8e-11 Score=113.08 Aligned_cols=107 Identities=17% Similarity=0.220 Sum_probs=84.8
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCCCCCC-
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFESVPE- 251 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~~~- 251 (356)
-+++.++ .....+|||+|||+|..+..+++++|+.+++++|. +.+++.++.+ .++++...|..+..+.
T Consensus 219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~ 297 (378)
T PRK15001 219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 297 (378)
T ss_pred HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence 4555565 33346999999999999999999999999999996 7777776542 2678899998875433
Q ss_pred C-cEEEecccccC---CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 252 A-DTILMKWVLSS---FDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 252 ~-D~i~~~~vlh~---~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
. |+|+++-.+|. ++++...++++.+++.|+|||.++++-
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 3 99999755553 455567899999999999999999974
No 68
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.29 E-value=1.8e-11 Score=106.59 Aligned_cols=142 Identities=20% Similarity=0.167 Sum_probs=97.9
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----C-CceEEEccCCC-CCC--CC-cEEEecccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----L-GIEHVGGDFFE-SVP--EA-DTILMKWVL 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~-~v~~~~~D~~~-~~~--~~-D~i~~~~vl 261 (356)
+..+|||+|||+|.++..+++.. .+++++|. +.+++.++.+ . ++++...|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999988854 45888996 6666665442 2 57888888765 322 33 999999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh-hhhhhcC-----CCccCCHHHHHHHHHHc
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT-ICLFQVP-----HGRERTKQEYSELAIKA 335 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~t~~e~~~ll~~a 335 (356)
|+..+ ...+|+++++.|+|||.+++.....+.. ......... ......+ .....+.++|.++++++
T Consensus 123 ~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPD--PQAFIRACAQLLKPGGILFFSTINRTPK------SYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCC--HHHHHHHHHHhcCCCcEEEEEecCCCch------HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 99965 6789999999999999998876432110 000000000 0000000 12235789999999999
Q ss_pred CCcceeEEE
Q 018405 336 GFKGVNYEY 344 (356)
Q Consensus 336 Gf~~~~~~~ 344 (356)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999987653
No 69
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.28 E-value=5.9e-11 Score=105.14 Aligned_cols=134 Identities=23% Similarity=0.283 Sum_probs=97.8
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCCC--
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPEA-- 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~-- 252 (356)
..+++.++ ....+|||+|||+|.++..+++.+|+.+++++|. +.+++.++.. ++++++.+|+.++.+..
T Consensus 78 ~~~l~~~~--~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f 155 (251)
T TIGR03534 78 EAALERLK--KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKF 155 (251)
T ss_pred HHHHHhcc--cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCce
Confidence 34444443 2456999999999999999999999999999996 7777766542 46899999998855433
Q ss_pred cEEEecccc------cCCChH------------------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh
Q 018405 253 DTILMKWVL------SSFDDE------------------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI 308 (356)
Q Consensus 253 D~i~~~~vl------h~~~~~------------------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~ 308 (356)
|+|++.-.. +.+..+ ....+++++.+.|+|||++++...
T Consensus 156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----------------- 218 (251)
T TIGR03534 156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----------------- 218 (251)
T ss_pred eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-----------------
Confidence 999984332 222211 124789999999999999887210
Q ss_pred hhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEccC
Q 018405 309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGAC 347 (356)
Q Consensus 309 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 347 (356)
....+++.++++++||+.+++.....
T Consensus 219 -------------~~~~~~~~~~l~~~gf~~v~~~~d~~ 244 (251)
T TIGR03534 219 -------------YDQGEAVRALFEAAGFADVETRKDLA 244 (251)
T ss_pred -------------ccHHHHHHHHHHhCCCCceEEEeCCC
Confidence 02346789999999999988877643
No 70
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.28 E-value=5.4e-11 Score=101.12 Aligned_cols=140 Identities=14% Similarity=0.178 Sum_probs=92.9
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC---CCCC--CcEEEecccccCCCh
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE---SVPE--ADTILMKWVLSSFDD 266 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~--~D~i~~~~vlh~~~~ 266 (356)
+..+|||||||+|.++..+++. ....++++|. +.+++.++. .+++++.+|+.+ +.++ .|+|++.+++||+++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC
Confidence 5679999999999999888765 3567889996 777777654 368888888865 2333 299999999999965
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh----------hhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405 267 EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI----------LDTICLFQVPHGRERTKQEYSELAIKAG 336 (356)
Q Consensus 267 ~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~t~~e~~~ll~~aG 336 (356)
..++|+++.+.++ .+++.-+.... ........ +...... .+....++.+++.++++++|
T Consensus 91 --~~~~l~e~~r~~~---~~ii~~p~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ll~~~G 159 (194)
T TIGR02081 91 --PEEILDEMLRVGR---HAIVSFPNFGY-----WRVRWSILTKGRMPVTGELPYDWYN-TPNIHFCTIADFEDLCGELN 159 (194)
T ss_pred --HHHHHHHHHHhCC---eEEEEcCChhH-----HHHHHHHHhCCccccCCCCCccccC-CCCcccCcHHHHHHHHHHCC
Confidence 6788999888655 33332111000 00000000 0000000 01234578999999999999
Q ss_pred CcceeEEEc
Q 018405 337 FKGVNYEYG 345 (356)
Q Consensus 337 f~~~~~~~~ 345 (356)
|++++....
T Consensus 160 f~v~~~~~~ 168 (194)
T TIGR02081 160 LRILDRAAF 168 (194)
T ss_pred CEEEEEEEe
Confidence 999887665
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.27 E-value=5e-11 Score=93.47 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=77.7
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCC-C
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPE-A 252 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~-~ 252 (356)
++..+. ..+..+|||+|||+|..+..+++++|+.+++++|. +.+++.+++. .+++++.+|... . .++ .
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 444454 55667999999999999999999999999999996 7777665432 568888888664 1 222 3
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
|+|++....+ ...++++++++.|+|||++++.
T Consensus 90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 9999876543 2468999999999999999873
No 72
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.27 E-value=2.1e-11 Score=101.66 Aligned_cols=108 Identities=24% Similarity=0.290 Sum_probs=81.6
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cE
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DT 254 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~ 254 (356)
.+++.++ .-++.++||+|||.|..+..|++ -+..++++|. +..++.+.+. -.|+....|+.+ .+++. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~--~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLAS--QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHH--TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHH--CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 4555555 44678999999999999999999 4678999995 5555544321 248888999988 66655 99
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|++..++++++.+...++++++.+.++|||.+++...+.
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence 999999999999999999999999999999999876653
No 73
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.24 E-value=3.4e-10 Score=97.47 Aligned_cols=133 Identities=16% Similarity=0.138 Sum_probs=97.3
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------------------CCCceEEEccCCCCCC-
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------------------YLGIEHVGGDFFESVP- 250 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~~~~- 250 (356)
..+..+|||+|||.|..+..|++ .+..++++|+ +..++.+.. ..+|++.++|+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 34568999999999999999998 5778999996 776665411 1468899999998322
Q ss_pred --CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405 251 --EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQE 327 (356)
Q Consensus 251 --~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 327 (356)
.. |+|+-..++|+++.+...+.++.+.++|+|||.++++....++.... .+ -...+.++
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------gP-p~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------GP-PFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------CC-CCCCCHHH
Confidence 12 99999999999999999999999999999999766654443322100 00 11358899
Q ss_pred HHHHHHHcCCcceeEEE
Q 018405 328 YSELAIKAGFKGVNYEY 344 (356)
Q Consensus 328 ~~~ll~~aGf~~~~~~~ 344 (356)
+.+++.. +|.+..+..
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9999863 366555443
No 74
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.24 E-value=3.7e-11 Score=99.79 Aligned_cols=98 Identities=23% Similarity=0.337 Sum_probs=78.9
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CC-cEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EA-DTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~-D~i~~~~vlh~ 263 (356)
+..+|||+|||+|..+..+++..|+.+++++|. +.+++.++.+ ++++++..|.++..+ .. |+|+++--+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 568999999999999999999999999999996 7777777542 338899999998655 33 99999988776
Q ss_pred CCh---HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 264 FDD---EQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 264 ~~~---~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
-.+ +-..++++.+.+.|+|||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 543 346799999999999999997744
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.23 E-value=8.5e-11 Score=107.92 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=84.0
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCC-cEE
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEA-DTI 255 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~-D~i 255 (356)
.+++.++ .....+|||+|||+|.++..+++.+|+.+++++|. +.+++.++.. -..+++..|..+..++. |+|
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 3444454 33456899999999999999999999999999996 7777777542 23467778887754444 999
Q ss_pred EecccccCC---ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 256 LMKWVLSSF---DDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 256 ~~~~vlh~~---~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+++..+|+. ..+...++++++.+.|+|||.++|+-.
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 999998863 234578999999999999999998653
No 76
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.22 E-value=3.3e-11 Score=102.97 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=76.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccC-CC-C--CCCC--cEEEecc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDF-FE-S--VPEA--DTILMKW 259 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~-~~-~--~~~~--D~i~~~~ 259 (356)
+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+ .. + .+.+ |+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 568999999999999999999999999999996 8787776532 5799999998 43 3 4433 9998865
Q ss_pred cccCCC------hHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 260 VLSSFD------DEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 260 vlh~~~------~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
...... ......+|++++++|+|||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 442211 1124689999999999999999854
No 77
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.22 E-value=5.4e-11 Score=97.74 Aligned_cols=126 Identities=17% Similarity=0.191 Sum_probs=85.1
Q ss_pred EEccc-hHHHHhCCCC---------CCceEEEccCCC-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEE
Q 018405 221 INYDL-PYVIKNAPSY---------LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLL 287 (356)
Q Consensus 221 ~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~li 287 (356)
+++|. +.+++.|+++ .+++++.+|+.+ ++++. |+|++..++|+++| ..++|++++++|||||+++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d--~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVD--RLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCC--HHHHHHHHHHHcCcCeEEE
Confidence 36785 8888776432 368999999988 77654 99999999999965 7899999999999999999
Q ss_pred EEecccCCCCCCchhhhhhhh-hhhhhhhhcCC-----------CccCCHHHHHHHHHHcCCcceeEEEccCc
Q 018405 288 NVNVTIPEVPENSATSREISI-LDTICLFQVPH-----------GRERTKQEYSELAIKAGFKGVNYEYGACN 348 (356)
Q Consensus 288 i~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 348 (356)
+.|...++..-.......... .-......... ...++++++.++|+++||+.++......+
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 999876542100000000000 00000000000 12358999999999999999987776543
No 78
>PTZ00146 fibrillarin; Provisional
Probab=99.20 E-value=9e-10 Score=97.41 Aligned_cols=132 Identities=14% Similarity=0.034 Sum_probs=91.3
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hH----HHHhCCCCCCceEEEccCCCCC-----CC-CcEEEec
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PY----VIKNAPSYLGIEHVGGDFFESV-----PE-ADTILMK 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~~-----~~-~D~i~~~ 258 (356)
+++..+|||+|||+|.++..+++... .-+++++|+ +. +++.+..+++|.++.+|...+. .+ .|+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 56778999999999999999999863 457899996 43 5666666688999999987532 22 3999886
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
.. + + ++...++.++++.|||||+++|....... +. .+.-..+-.+|. ++|+++||+
T Consensus 210 va-~--p-dq~~il~~na~r~LKpGG~~vI~ika~~i--------------d~-----g~~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VA-Q--P-DQARIVALNAQYFLKNGGHFIISIKANCI--------------DS-----TAKPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CC-C--c-chHHHHHHHHHHhccCCCEEEEEEecccc--------------cc-----CCCHHHHHHHHH-HHHHHcCCc
Confidence 63 1 2 34567777899999999999993211110 10 000000111344 889999999
Q ss_pred ceeEEEcc
Q 018405 339 GVNYEYGA 346 (356)
Q Consensus 339 ~~~~~~~~ 346 (356)
.++.+...
T Consensus 266 ~~e~v~L~ 273 (293)
T PTZ00146 266 PKEQLTLE 273 (293)
T ss_pred eEEEEecC
Confidence 88877764
No 79
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.20 E-value=3.7e-10 Score=92.97 Aligned_cols=143 Identities=15% Similarity=0.267 Sum_probs=98.2
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC---CCCCC--cEEEecccccCCC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE---SVPEA--DTILMKWVLSSFD 265 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~i~~~~vlh~~~ 265 (356)
++..||||+|||.|.++..|.+. .++++.++++ ++.+..+.+ .++.++++|+.+ .+|+. |.|+++.+|.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 37799999999999999888875 6888999986 554544433 378999999987 36654 9999999999994
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEecccCC----------CCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405 266 DEQSLKLLKNCYKALPDGGKLLNVNVTIPE----------VPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA 335 (356)
Q Consensus 266 ~~~~~~~L~~~~~~L~pgG~lii~e~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 335 (356)
.+.++|+++.+. |.+.+|.=+-... ..-+.....-+.+++ +||-...|..++++++++.
T Consensus 90 --~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd------TPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 90 --RPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD------TPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred --HHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC------CCCcccccHHHHHHHHHHC
Confidence 478889888765 4455552211100 000000000011111 3455566999999999999
Q ss_pred CCcceeEEEccC
Q 018405 336 GFKGVNYEYGAC 347 (356)
Q Consensus 336 Gf~~~~~~~~~~ 347 (356)
|+++.+......
T Consensus 159 ~i~I~~~~~~~~ 170 (193)
T PF07021_consen 159 GIRIEERVFLDG 170 (193)
T ss_pred CCEEEEEEEEcC
Confidence 999999887654
No 80
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.19 E-value=4.8e-10 Score=93.05 Aligned_cols=158 Identities=16% Similarity=0.198 Sum_probs=100.8
Q ss_pred hhccCchHHHHHHHHHh----hhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCC
Q 018405 158 YMGVDSRFNDVFNTGML----GHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAP 233 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~ 233 (356)
.+.++|+....|.++.. .+....+..+++.+...++...|.|+|||.+.++..+.. ..++.-+|+-.
T Consensus 33 lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva------ 103 (219)
T PF05148_consen 33 LFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA------ 103 (219)
T ss_dssp HHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-------
T ss_pred HHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccC------
Confidence 34456666565555544 333455677777776444567999999999999976542 34688888622
Q ss_pred CCCCceEEEccCCC-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhh
Q 018405 234 SYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILD 310 (356)
Q Consensus 234 ~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~ 310 (356)
.+-.++..|+.. |.++. |+++++..|--- +....|+++.|.|||||.|.|.|....-
T Consensus 104 --~n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~SRf--------------- 163 (219)
T PF05148_consen 104 --PNPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKSRF--------------- 163 (219)
T ss_dssp --SSTTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGGG----------------
T ss_pred --CCCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecccC---------------
Confidence 133578899987 87766 999998888652 3799999999999999999999865321
Q ss_pred hhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 311 TICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 311 ~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
-..+++.+.+++.||+..........+.+.+++|
T Consensus 164 ------------~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 164 ------------ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp ------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred ------------cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 1357888999999999988766667777887765
No 81
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=5.8e-10 Score=100.22 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=96.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CC-cEEEecccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EA-DTILMKWVL 261 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~-D~i~~~~vl 261 (356)
..+..+|||+|||+|..+..++..+|..+++++|. +.+++.++++ .++.++.+|++++.+ .. |+|++.--.
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 45678999999999999999999999999999996 7776666532 579999999987554 23 999884221
Q ss_pred ------cCCCh------------------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc
Q 018405 262 ------SSFDD------------------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV 317 (356)
Q Consensus 262 ------h~~~~------------------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (356)
+.+.. +...++++++.+.|+|||++++ +..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~-e~g------------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL-EIG------------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE-EEC-------------------------
Confidence 11111 2246789999999999999988 110
Q ss_pred CCCccCCHHHHHHHHHHcCCcceeEEEcc-CceeEEEEe
Q 018405 318 PHGRERTKQEYSELAIKAGFKGVNYEYGA-CNLYVMEFL 355 (356)
Q Consensus 318 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~ 355 (356)
. ...+++.+++++.||+.+.+.... +...++.++
T Consensus 240 --~--~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 240 --Y--DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred --c--hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0 124568899999999977775532 333344443
No 82
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.18 E-value=5.7e-10 Score=95.67 Aligned_cols=106 Identities=18% Similarity=0.285 Sum_probs=78.7
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEccCCCC---------CCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGGDFFES---------VPE 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~~~ 251 (356)
..+.+.+.-+++..+|||||||+|.++..+++.. +..+++++|+.++ ...++++++.+|+.++ .+.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3444445434677899999999999999999986 4568999997442 2235799999999873 333
Q ss_pred -C-cEEEecccccCCChHH---------HHHHHHHHHHhCCCCCEEEEEec
Q 018405 252 -A-DTILMKWVLSSFDDEQ---------SLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 252 -~-D~i~~~~vlh~~~~~~---------~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
. |+|++....|...+.. ...+|+.+++.|+|||.+++..+
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 2 9999977666543321 25689999999999999999654
No 83
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.16 E-value=2e-10 Score=102.93 Aligned_cols=91 Identities=18% Similarity=0.260 Sum_probs=73.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCC---eEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEEecccccCC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRI---KGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTILMKWVLSSF 264 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~ 264 (356)
+..+|||||||+|.++..+++.+|.. .++++|. +.+++.|.++ +++.+..+|..+ |++++ |+|++...-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 45789999999999999999888753 6899996 8888887654 789999999888 77654 999875431
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 265 DDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
..+++++++|+|||+++++.+.
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeCC
Confidence 2357899999999999997643
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.16 E-value=2.6e-10 Score=97.73 Aligned_cols=100 Identities=20% Similarity=0.168 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC-
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP- 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~- 250 (356)
...+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.++++ ++++++.+|..+..+
T Consensus 61 ~~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~ 139 (205)
T PRK13944 61 VAMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK 139 (205)
T ss_pred HHHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence 345555555 66778999999999999999988764 558999996 7777766542 358899999987333
Q ss_pred C--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 251 E--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 251 ~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
. .|+|++..+++++++ ++.+.|+|||++++.
T Consensus 140 ~~~fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 140 HAPFDAIIVTAAASTIPS--------ALVRQLKDGGVLVIP 172 (205)
T ss_pred CCCccEEEEccCcchhhH--------HHHHhcCcCcEEEEE
Confidence 2 299999999887653 577889999999884
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.14 E-value=2e-09 Score=90.86 Aligned_cols=123 Identities=22% Similarity=0.319 Sum_probs=90.3
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CC-ceEEEccCCCCCCC-C-cEEEeccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LG-IEHVGGDFFESVPE-A-DTILMKWV 260 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~~~~~-~-D~i~~~~v 260 (356)
.+..+|||+|||+|.++..++.. +.+++++|. +.+++.+++. ++ +.++.+|+.++.++ . |+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999987 578999996 7777766432 22 88899998885544 3 99998655
Q ss_pred ccCCC-------------------hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc
Q 018405 261 LSSFD-------------------DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR 321 (356)
Q Consensus 261 lh~~~-------------------~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (356)
..... ......+++++.+.|+|||.++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 43211 1234678999999999999988753210
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEc
Q 018405 322 ERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 322 ~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
...+++.++++++||++..+...
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeec
Confidence 12457888999999998876554
No 86
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.13 E-value=1.7e-09 Score=97.49 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=75.2
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEec------
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMK------ 258 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~------ 258 (356)
.+|||+|||+|.++..++..+|+.+++++|. +.+++.++++ .+++++.+|++++.+. .|+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999996 7777776543 3599999999886554 3999885
Q ss_pred -------ccccCCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 018405 259 -------WVLSSFDD----------EQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 259 -------~vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii 288 (356)
.+.+|-|. +....+++++.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23343331 1466899999999999998876
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.13 E-value=1.2e-10 Score=98.86 Aligned_cols=97 Identities=15% Similarity=0.265 Sum_probs=75.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C---CCCC--cEEEecc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S---VPEA--DTILMKW 259 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~---~~~~--D~i~~~~ 259 (356)
...++||||||+|.++..+++++|+..++++|. +.+++.+.+. .+++++.+|+.+ + .+.+ |.|++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999996 7777766432 579999999875 2 3442 8887765
Q ss_pred cccCCChHH-------HHHHHHHHHHhCCCCCEEEEEe
Q 018405 260 VLSSFDDEQ-------SLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 260 vlh~~~~~~-------~~~~L~~~~~~L~pgG~lii~e 290 (356)
..+ |+... ...+++.++++|+|||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 433 22111 1579999999999999998865
No 88
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.13 E-value=4.9e-10 Score=96.40 Aligned_cols=101 Identities=19% Similarity=0.194 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC-CC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV-PE 251 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-~~ 251 (356)
...+++.+. +.+..+|||||||+|..+..+++.. ++.+++++|. +.+++.++++ ++++++.+|..... +.
T Consensus 65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 455666666 7788999999999999999888875 4468999996 8888777543 57999999988733 33
Q ss_pred C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+ |+|++....++.+ +.+.+.|+|||++++..
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 3 9999987776553 34667899999998853
No 89
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.12 E-value=4.1e-09 Score=91.65 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=111.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCC--CeEEEccc-hHHHHhCCCC------CCc-eEEEccCCCC------CCCCcE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPR--IKGINYDL-PYVIKNAPSY------LGI-EHVGGDFFES------VPEADT 254 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~------~~v-~~~~~D~~~~------~~~~D~ 254 (356)
-..+.+||||.||+|.+....+..+|. .++...|. +..++..++. ..+ +|..+|.++. .|..++
T Consensus 133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 347789999999999999999999998 67888886 6656655432 444 9999999983 233499
Q ss_pred EEecccccCCChHH-HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCC-----ccCCHHHH
Q 018405 255 ILMKWVLSSFDDEQ-SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHG-----RERTKQEY 328 (356)
Q Consensus 255 i~~~~vlh~~~~~~-~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~t~~e~ 328 (356)
++.+.....++|.+ +...|+.+++++.|||.+|.-..-..+.. ........ . +.+| +.||..|+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl-----e~IAr~Lt----s-Hr~g~~WvMRrRsq~Em 282 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL-----EMIARVLT----S-HRDGKAWVMRRRSQAEM 282 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch-----HHHHHHHh----c-ccCCCceEEEecCHHHH
Confidence 99999999999877 44689999999999999988543222210 00111111 0 1122 35799999
Q ss_pred HHHHHHcCCcceeEEE-ccCceeEEEEeC
Q 018405 329 SELAIKAGFKGVNYEY-GACNLYVMEFLK 356 (356)
Q Consensus 329 ~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 356 (356)
.+++++|||+-++..- ..+-++|..++|
T Consensus 283 D~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 283 DQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHcCCchhhheeccCCceEEEeecC
Confidence 9999999998776443 345677776654
No 90
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.12 E-value=1.2e-09 Score=94.26 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=102.9
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C--CCC--CcEEEe
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S--VPE--ADTILM 257 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~--~~~--~D~i~~ 257 (356)
.....+|||+|||+|..+..++++.++++++++++ +.+.+.|++. +||++++.|+.+ . .+. .|+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44589999999999999999999999999999997 7777777653 789999999987 2 222 399998
Q ss_pred cccccCCChH----------------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc
Q 018405 258 KWVLSSFDDE----------------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR 321 (356)
Q Consensus 258 ~~vlh~~~~~----------------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (356)
+--.+.-.+. ....+++.+.+.|||||.+.++-..-
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------------------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------------------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------------------
Confidence 7655543322 25789999999999999999854210
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEcc------CceeEEEEeC
Q 018405 322 ERTKQEYSELAIKAGFKGVNYEYGA------CNLYVMEFLK 356 (356)
Q Consensus 322 ~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vi~~~~ 356 (356)
...+|.+++++.+|...++.... ...-++++.|
T Consensus 174 --rl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k 212 (248)
T COG4123 174 --RLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIK 212 (248)
T ss_pred --HHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEec
Confidence 13578888888888888776653 3444666554
No 91
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.12 E-value=8.7e-10 Score=97.47 Aligned_cols=115 Identities=23% Similarity=0.238 Sum_probs=82.1
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCc----eEEEccCCCCCCCCcEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGI----EHVGGDFFESVPEADTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v----~~~~~D~~~~~~~~D~i~~~~vlh~ 263 (356)
.+..+|||||||+|.++..+++..+ .+++++|. +.+++.++++ .++ .+..+|. ..|+|+++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-- 189 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-- 189 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH--
Confidence 4678999999999999988776544 36999996 8888777653 222 2222221 34999875332
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
+....+++++.+.|+|||++++.+... ...+++.+.+++.||++++..
T Consensus 190 ---~~~~~l~~~~~~~LkpgG~lilsgi~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 190 ---NPLLELAPDLARLLKPGGRLILSGILE-----------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ---HHHHHHHHHHHHhcCCCcEEEEEECcH-----------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 335788999999999999999854321 124678889999999988876
Q ss_pred Ecc
Q 018405 344 YGA 346 (356)
Q Consensus 344 ~~~ 346 (356)
...
T Consensus 238 ~~~ 240 (250)
T PRK00517 238 ERG 240 (250)
T ss_pred EeC
Confidence 653
No 92
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.09 E-value=9.2e-10 Score=90.03 Aligned_cols=99 Identities=21% Similarity=0.245 Sum_probs=81.6
Q ss_pred HHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC---CCCCCcE
Q 018405 185 LESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE---SVPEADT 254 (356)
Q Consensus 185 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~~~D~ 254 (356)
+..+. +.+..+++|||||+|..+.+++...|..+++.+|. ++.++..+++ ++++++.+|.-+ +.+..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 45565 77889999999999999999999999999999995 7766665543 789999999766 2334599
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
|++...-. ...+|+.+...|+|||++++.-
T Consensus 106 iFIGGg~~------i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 106 IFIGGGGN------IEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred EEECCCCC------HHHHHHHHHHHcCcCCeEEEEe
Confidence 99987722 5899999999999999999943
No 93
>PHA03411 putative methyltransferase; Provisional
Probab=99.09 E-value=1.4e-09 Score=95.22 Aligned_cols=124 Identities=14% Similarity=0.166 Sum_probs=92.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC-cEEEecccccCCChHH
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDDEQ 268 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~~~ 268 (356)
...+|||+|||+|.++..++.+.+..+++++|. +.+++.+++. ++++++.+|+.+ ..+.. |+|+++-.+++.+.++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 457999999999999999988887789999996 8888887654 679999999988 33333 9999988888765432
Q ss_pred H------------------HHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405 269 S------------------LKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE 330 (356)
Q Consensus 269 ~------------------~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 330 (356)
. .+.++.....|+|+|.++++ ....+ . .....+++++++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss~~----------~----------y~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSGRP----------Y----------YDGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eeccc----------c----------ccccCCHHHHHH
Confidence 2 35667777888888877665 11110 0 011246889999
Q ss_pred HHHHcCCcc
Q 018405 331 LAIKAGFKG 339 (356)
Q Consensus 331 ll~~aGf~~ 339 (356)
+++++||..
T Consensus 201 ~l~~~g~~~ 209 (279)
T PHA03411 201 WSKQTGLVT 209 (279)
T ss_pred HHHhcCcEe
Confidence 999999864
No 94
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.09 E-value=9.1e-10 Score=95.13 Aligned_cols=100 Identities=15% Similarity=0.145 Sum_probs=76.8
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC--
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-- 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-- 250 (356)
...+++.+. ..+..+|||||||+|..+..+++..+ +.+++++|. +.+++.++++ ++++++.+|..+..+
T Consensus 66 ~~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 66 VAMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL 144 (215)
T ss_pred HHHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence 345566665 67889999999999999999998865 467899995 8887776543 579999999887322
Q ss_pred C-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 251 E-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 251 ~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
. .|+|++.....+.+ +.+.+.|+|||++++.
T Consensus 145 ~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGPKIP--------EALIDQLKEGGILVMP 176 (215)
T ss_pred CCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEE
Confidence 2 39999887665543 4577889999999884
No 95
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.07 E-value=3.3e-09 Score=98.34 Aligned_cols=126 Identities=21% Similarity=0.261 Sum_probs=91.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCC-C--CcEEEeccccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVP-E--ADTILMKWVLS 262 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~-~--~D~i~~~~vlh 262 (356)
+..+|||+|||+|.++..++...|+.+++++|. +.+++.++++ .+++++.+|+++ ..+ . .|+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999996 8888877653 368999999976 333 2 29999854211
Q ss_pred CCCh-----------------------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405 263 SFDD-----------------------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH 319 (356)
Q Consensus 263 ~~~~-----------------------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (356)
.-.+ +-...+++.+.+.|+|||++++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~-------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF-------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------------------------
Confidence 0000 1134677777889999998765 2211
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEccCc
Q 018405 320 GRERTKQEYSELAIKAGFKGVNYEYGACN 348 (356)
Q Consensus 320 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 348 (356)
...+.+.+++++.||+.+++.+...+
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~G 409 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLAG 409 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCCC
Confidence 12467888999999998888776443
No 96
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.04 E-value=1.8e-09 Score=97.09 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=75.1
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEecc---
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKW--- 259 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~--- 259 (356)
+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|++++.+. .|+|++.-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999996 8887777543 4689999999875554 39999851
Q ss_pred ----------cccCCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 018405 260 ----------VLSSFDD----------EQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 260 ----------vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii 288 (356)
.+++.|. +....+++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122211 1246889999999999999886
No 97
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.01 E-value=3e-09 Score=90.56 Aligned_cols=101 Identities=18% Similarity=0.252 Sum_probs=76.9
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC---CC-CC
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES---VP-EA 252 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~-~~ 252 (356)
++..+. ..+..+|||+|||+|.++..+++..|+.+++++|. +.+++.++++ ++++++.+|..+. .. ..
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 444454 66778999999999999999998888899999996 8887776542 4688999987541 22 23
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
|.+++.. . .....+++++.+.|+|||++++...
T Consensus 111 d~v~~~~-----~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG-----G-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC-----C-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6654421 1 2367899999999999999999754
No 98
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.01 E-value=9.5e-09 Score=87.33 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=111.1
Q ss_pred hhhhccCchHHHHHHHHHhhhhH----HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHh
Q 018405 156 YDYMGVDSRFNDVFNTGMLGHTC----VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKN 231 (356)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~ 231 (356)
+..+..+|+....|..+...... ..+..+++.+...+....|-|+|||.+.++.. ..-.+.-+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA---- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc-----cccceeeeeeec----
Confidence 33455677777777776654322 34556666665345678999999999998862 122466677532
Q ss_pred CCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh
Q 018405 232 APSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI 308 (356)
Q Consensus 232 a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~ 308 (356)
.+-+++..|+.. |.++. |+++++..|-- .+...+++++++.|+|||.++|.|....-
T Consensus 210 ----~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SRf------------- 269 (325)
T KOG3045|consen 210 ----VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSRF------------- 269 (325)
T ss_pred ----CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhhc-------------
Confidence 255678899988 76654 99988877754 34789999999999999999998864321
Q ss_pred hhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 309 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
.+..++.+.+...||.+....-....+.+.++.|
T Consensus 270 --------------~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 270 --------------SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred --------------ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 1234578889999999887766666777777654
No 99
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=3.8e-09 Score=92.99 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=85.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC-Cc
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE-AD 253 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~-~D 253 (356)
+-+++.++ .....+|||+|||.|.++..+++.+|+.+++.+|. ...++.++++ .+.++...|..++..+ .|
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 45566676 45556999999999999999999999999999996 6677777654 2335677788775444 49
Q ss_pred EEEecccccCCC---hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 254 TILMKWVLSSFD---DEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 254 ~i~~~~vlh~~~---~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+|+++--+|.=- +.-..++++.+.+.|++||.|.|+-.
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 999999998632 22244899999999999999998654
No 100
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.01 E-value=5e-09 Score=89.29 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=74.6
Q ss_pred HHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--C-C-CCC
Q 018405 186 ESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--S-V-PEA 252 (356)
Q Consensus 186 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~-~~~ 252 (356)
..+. ..+..+|||+|||+|.++..++... +..+++++|. +.+++.++++ +++.++.+|..+ + . +..
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 4444 6678899999999999999998764 5678999996 7777765432 468888898865 2 2 223
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
|+|++... ..+...+|+.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99988542 13467899999999999999987
No 101
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.00 E-value=2.5e-09 Score=98.48 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=78.4
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------CCCceEEEccCCC---CCCCC
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFE---SVPEA 252 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~---~~~~~ 252 (356)
.+++.+. ......+||||||+|.++..+++++|+..++++|. +.+++.+.+ .+++.++.+|... .++++
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 3444444 23456899999999999999999999999999996 666655533 2579999999753 45544
Q ss_pred --cEEEecccccCCChHH-----HHHHHHHHHHhCCCCCEEEEEe
Q 018405 253 --DTILMKWVLSSFDDEQ-----SLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 253 --D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~pgG~lii~e 290 (356)
|.|++.+... |+... ...+|+.++++|+|||.+.+..
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 9988754322 32211 2589999999999999999954
No 102
>PRK14967 putative methyltransferase; Provisional
Probab=99.00 E-value=1.2e-08 Score=88.62 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=73.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCC-C-cEEEeccccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPE-A-DTILMKWVLS 262 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~-~-D~i~~~~vlh 262 (356)
..+..+|||+|||+|.++..+++. +..+++++|. +.+++.++.+ .+++++.+|+.+..+. . |+|++.--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 456689999999999999988875 3348899996 7777655442 2477888998774443 3 9999864322
Q ss_pred CCCh-------------------HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 263 SFDD-------------------EQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 263 ~~~~-------------------~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
.-+. .....+++++.+.|+|||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 1110 124578899999999999999875443
No 103
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=3.3e-09 Score=96.19 Aligned_cols=95 Identities=18% Similarity=0.248 Sum_probs=74.9
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEecc----
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKW---- 259 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~---- 259 (356)
..+|||+|||+|.++..++..+|+.+++++|. +.+++.++++ ++++++.+|+++..+. .|+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 36899999999999999999999999999996 8888777543 4699999999875543 39999851
Q ss_pred ---------cccCCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 018405 260 ---------VLSSFDD----------EQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 260 ---------vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii 288 (356)
.+++.|. +....+++++.+.|+|||++++
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122221 2246889999999999999887
No 104
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.97 E-value=7.5e-09 Score=100.18 Aligned_cols=126 Identities=15% Similarity=0.247 Sum_probs=92.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEecc---
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKW--- 259 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~--- 259 (356)
+..+|||+|||+|.++..++..+|+.+++++|. +.+++.++.+ ++++++.+|+++..+. .|+|+++-
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence 346899999999999999999999999999996 7787777643 4789999998875443 39999832
Q ss_pred -----------cccCCCh----------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405 260 -----------VLSSFDD----------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP 318 (356)
Q Consensus 260 -----------vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (356)
+..+.|. +....+++.+.+.|+|||++++ |...
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~------------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGF------------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECC-------------------------
Confidence 1111111 1235678899999999999876 3110
Q ss_pred CCccCCHHHHHHHHHHcCCcceeEEEccCc
Q 018405 319 HGRERTKQEYSELAIKAGFKGVNYEYGACN 348 (356)
Q Consensus 319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 348 (356)
...+.+.+++.+.||..+.+.....+
T Consensus 272 ----~q~~~v~~~~~~~g~~~~~~~~D~~g 297 (506)
T PRK01544 272 ----KQEEAVTQIFLDHGYNIESVYKDLQG 297 (506)
T ss_pred ----chHHHHHHHHHhcCCCceEEEecCCC
Confidence 12457788888999998887775433
No 105
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.97 E-value=5.1e-09 Score=94.45 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=68.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC-CcEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE-ADTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~-~D~i~~~~vlh~ 263 (356)
+..+|||||||+|.++..+++. +..+++++|. +.+++.++++ .++.+...|.....+. .|+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 5689999999999999887764 4458999996 7777777543 3455555553332222 3999986543
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+....+++++++.|+|||++++...
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3357899999999999999998654
No 106
>PRK04457 spermidine synthase; Provisional
Probab=98.96 E-value=1.8e-09 Score=95.79 Aligned_cols=97 Identities=21% Similarity=0.302 Sum_probs=76.3
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC---CCCCC-cEEEecc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE---SVPEA-DTILMKW 259 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~~~-D~i~~~~ 259 (356)
+++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.+++. ++++++.+|..+ ..++. |+|++-.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3568999999999999999999999999999997 8888877542 679999999865 23333 9998742
Q ss_pred ccc--CCChH-HHHHHHHHHHHhCCCCCEEEEE
Q 018405 260 VLS--SFDDE-QSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 260 vlh--~~~~~-~~~~~L~~~~~~L~pgG~lii~ 289 (356)
.+ ..+.. ....+++++++.|+|||++++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 22 12211 1379999999999999999985
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.96 E-value=4.9e-09 Score=88.63 Aligned_cols=102 Identities=16% Similarity=0.225 Sum_probs=73.9
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEccCCCC---------CCC-C
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGGDFFES---------VPE-A 252 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~~~-~ 252 (356)
+.+.+....+..+|||+|||+|.++..+++.+ +..+++++|..+.. ..++++++.+|+.++ .+. .
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~ 98 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDK 98 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCC
Confidence 44445446678999999999999999999887 56789999974322 235788999998762 233 3
Q ss_pred -cEEEeccccc---CCC------hHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 253 -DTILMKWVLS---SFD------DEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 253 -D~i~~~~vlh---~~~------~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
|+|++....| .|. .+....+|+.+++.|+|||++++.
T Consensus 99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 9999854322 111 112468999999999999999985
No 108
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.95 E-value=2.5e-08 Score=87.96 Aligned_cols=125 Identities=20% Similarity=0.187 Sum_probs=89.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCCCCC----CC-cEEEecccc--
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFESVP----EA-DTILMKWVL-- 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~~~~----~~-D~i~~~~vl-- 261 (356)
+..+|||+|||+|.++..+++..|+.+++++|. +.+++.++++ .+++++.+|+++..+ .. |+|++.--.
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999999999999999996 8888877654 347889999876332 23 999875321
Q ss_pred ----cCCChH------------------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405 262 ----SSFDDE------------------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH 319 (356)
Q Consensus 262 ----h~~~~~------------------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (356)
+..+++ -...+++.+.+.|+|||++++.-. .
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~---~------------------------ 218 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS---E------------------------ 218 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---c------------------------
Confidence 111111 134888888999999999987321 0
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEccC
Q 018405 320 GRERTKQEYSELAIKAGFKGVNYEYGAC 347 (356)
Q Consensus 320 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~ 347 (356)
...+++.+++++.||+..-...-..
T Consensus 219 ---~~~~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 219 ---RQAPLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred ---chHHHHHHHHHHCCCCceeeEcccc
Confidence 0134677888889988765544433
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.95 E-value=6.4e-09 Score=78.00 Aligned_cols=92 Identities=26% Similarity=0.321 Sum_probs=74.4
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC------CCCCceEEEccCCCCC---CCC-cEEEecccccCC
Q 018405 196 KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP------SYLGIEHVGGDFFESV---PEA-DTILMKWVLSSF 264 (356)
Q Consensus 196 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~v~~~~~D~~~~~---~~~-D~i~~~~vlh~~ 264 (356)
+|+|+|||.|..+..+++ .+..+++++|. +.....++ ...++++..+|+.+.. +.. |+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67789999996 55555443 1257889999988832 233 999999999984
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 265 DDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 265 ~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 356899999999999999999875
No 110
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.93 E-value=7.3e-09 Score=83.46 Aligned_cols=122 Identities=20% Similarity=0.150 Sum_probs=89.1
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC-CCC-C-cEEEecccccC
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES-VPE-A-DTILMKWVLSS 263 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-~~~-~-D~i~~~~vlh~ 263 (356)
.||||+|||.|.++..|++.--....+++|. +..++.|+.. +.|+|.+.|+.+| +-. . |+|+=..++..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999998543345788885 6666665432 3499999999984 322 2 77754444332
Q ss_pred C------ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018405 264 F------DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGF 337 (356)
Q Consensus 264 ~------~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 337 (356)
+ ++......+..+.+.|+|||+++|.. | -.|.+|+.+.++.-||
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS--------------------------C----N~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS--------------------------C----NFTKDELVEEFENFNF 198 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEe--------------------------c----CccHHHHHHHHhcCCe
Confidence 2 22334567888999999999999821 1 2578999999999999
Q ss_pred cceeEEEcc
Q 018405 338 KGVNYEYGA 346 (356)
Q Consensus 338 ~~~~~~~~~ 346 (356)
.....+|.+
T Consensus 199 ~~~~tvp~p 207 (227)
T KOG1271|consen 199 EYLSTVPTP 207 (227)
T ss_pred EEEEeeccc
Confidence 998888876
No 111
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.92 E-value=2.8e-08 Score=85.38 Aligned_cols=101 Identities=13% Similarity=0.047 Sum_probs=83.6
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------------------CCCceEEEccCCC-CCC
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------------------YLGIEHVGGDFFE-SVP 250 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------------~~~v~~~~~D~~~-~~~ 250 (356)
..+..|||+.|||.|.-+..|+. -+.+++++|+ +..++.+.+ ..+|++.++|+++ +.+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~--~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLS--KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHh--CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 34568999999999999999998 4667999997 666766421 1478999999999 422
Q ss_pred -----CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 251 -----EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 251 -----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
..|+|+=..+|++++.+...+..+.+.++|+|||.++++....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 1299999999999999999999999999999999999987543
No 112
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.92 E-value=1.3e-08 Score=93.67 Aligned_cols=130 Identities=15% Similarity=0.006 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCC-
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPE- 251 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~- 251 (356)
...+++... +++..+|||+|||+|.++...+. .+.+++++|. +.+++.++.+ +++.+..+|+.+ +.+.
T Consensus 171 a~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 171 ARAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHhC-CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence 344444444 66788999999999999887655 4678999996 7777765432 347889999988 5543
Q ss_pred C-cEEEecccc-------cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccC
Q 018405 252 A-DTILMKWVL-------SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRER 323 (356)
Q Consensus 252 ~-D~i~~~~vl-------h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (356)
. |+|++.--. .+...+-..++|+++++.|+|||+++++-+.
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~------------------------------- 296 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT------------------------------- 296 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC-------------------------------
Confidence 3 999985221 1111133579999999999999999885321
Q ss_pred CHHHHHHHHHHcCCcceeEEEcc
Q 018405 324 TKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 324 t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
..+|.++++++|| ++......
T Consensus 297 -~~~~~~~~~~~g~-i~~~~~~~ 317 (329)
T TIGR01177 297 -RIDLESLAEDAFR-VVKRFEVR 317 (329)
T ss_pred -CCCHHHHHhhcCc-chheeeee
Confidence 1245567888999 77666643
No 113
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=1.1e-08 Score=88.26 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=73.5
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC---
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE--- 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~--- 251 (356)
..++..+. ..+..+|||||||+|..+..+++... +++++|. +.+++.++++ .+++++.+|..+..+.
T Consensus 68 ~~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 144 (212)
T PRK00312 68 ARMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP 144 (212)
T ss_pred HHHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence 34455555 67789999999999999987777653 6888885 7777666542 4689999998774332
Q ss_pred CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
.|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 145 fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 145 FDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 3999998776654 3457789999999998543
No 114
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.88 E-value=2.2e-09 Score=83.29 Aligned_cols=95 Identities=20% Similarity=0.286 Sum_probs=74.2
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C--CCCC--cEEEecccc
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S--VPEA--DTILMKWVL 261 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~--~~~~--D~i~~~~vl 261 (356)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++.. ++++++.+|+.+ . .+.. |+|+++-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 788999996 7777666542 579999999987 3 4433 999997666
Q ss_pred cCCC------hHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 262 SSFD------DEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 262 h~~~------~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+... .+....+++++.+.|+|||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 6432 1134689999999999999998864
No 115
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.88 E-value=7.1e-09 Score=87.42 Aligned_cols=98 Identities=18% Similarity=0.253 Sum_probs=68.5
Q ss_pred CCCceEEEEcCCccH--HHHH--HHHh----CC-CCeEEEccc-hHHHHhCCCC--------------------------
Q 018405 192 EHVKKLVDVGGGLGA--TLNM--IISK----YP-RIKGINYDL-PYVIKNAPSY-------------------------- 235 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~--~~~~--l~~~----~p-~~~~~~~D~-~~~~~~a~~~-------------------------- 235 (356)
.+..||+-.||++|. ++.+ +.+. .+ .+++++.|+ +.+++.|++-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 367899999999995 3333 3331 12 467899996 7788777531
Q ss_pred --------CCceEEEccCCC-CCCC-C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 236 --------LGIEHVGGDFFE-SVPE-A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 236 --------~~v~~~~~D~~~-~~~~-~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
.+|.|..+|+.+ +.+. . |+|+|.+||-+++++...++++++++.|+|||.|++-
T Consensus 110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 468999999998 3333 3 9999999999999999999999999999999999995
No 116
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=9.7e-09 Score=86.53 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=74.1
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------C----------------------
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------L---------------------- 236 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~---------------------- 236 (356)
+..+..+|||||.+|.++..+++.|....++++|+ +..++.|++. .
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55778999999999999999999999889999997 7778877653 0
Q ss_pred --------Cce-------EEEccCCC-CCCCCcEEEecc----cccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 237 --------GIE-------HVGGDFFE-SVPEADTILMKW----VLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 237 --------~v~-------~~~~D~~~-~~~~~D~i~~~~----vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
++. +..-|+.+ ..++.|+|+|-. +=-+|.|+-...+|+++++.|.|||+|++
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 111 11122332 234458987743 33357889999999999999999999888
No 117
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.88 E-value=2.3e-08 Score=85.98 Aligned_cols=141 Identities=19% Similarity=0.201 Sum_probs=88.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCCC-CcEEEecccccCCChHHHHH
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPE-ADTILMKWVLSSFDDEQSLK 271 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~-~D~i~~~~vlh~~~~~~~~~ 271 (356)
+..++||||+|.|..+..++..+.++.++-.. +.|....+++ +++++..|-....+. .|+|.|.|+|... +++..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~k-g~~vl~~~~w~~~~~~fDvIscLNvLDRc--~~P~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSKK-GFTVLDIDDWQQTDFKFDVISCLNVLDRC--DRPLT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHhC-CCeEEehhhhhccCCceEEEeehhhhhcc--CCHHH
Confidence 45789999999999999999988874443333 5555554433 455444332222222 3999999999877 44799
Q ss_pred HHHHHHHhCCCCCEEEEEecc-----cCCCC--CCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405 272 LLKNCYKALPDGGKLLNVNVT-----IPEVP--ENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 272 ~L~~~~~~L~pgG~lii~e~~-----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 344 (356)
+|+.++++|+|+|++++.=.. .+... ...+.. ..+ ..+...+-....+.+.|+.+||++.+...
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~l~-----~~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----LLP-----VKGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----hcC-----CCCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 999999999999999884321 11111 001111 111 01011111223345899999999999877
Q ss_pred cc
Q 018405 345 GA 346 (356)
Q Consensus 345 ~~ 346 (356)
.+
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 65
No 118
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.87 E-value=1.4e-08 Score=88.30 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcCCcc--HHHHHHHH-hCCCCeEEEccc-hHHHHhCCCC----CC--ceEEEccCCCC
Q 018405 179 VVMEKVLESYKGFEHVKKLVDVGGGLG--ATLNMIIS-KYPRIKGINYDL-PYVIKNAPSY----LG--IEHVGGDFFES 248 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G--~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~----~~--v~~~~~D~~~~ 248 (356)
.+....++.+..-.+...+||||||-- ...-++++ ..|+.+++.+|. |-++..++.. ++ ..++.+|+.++
T Consensus 54 ~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p 133 (267)
T PF04672_consen 54 AFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP 133 (267)
T ss_dssp HHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred HHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence 334445555442237789999999933 34445544 579999999996 8778777542 44 88999999874
Q ss_pred -----CCC---------CcEEEecccccCCCh-HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh
Q 018405 249 -----VPE---------ADTILMKWVLSSFDD-EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC 313 (356)
Q Consensus 249 -----~~~---------~D~i~~~~vlh~~~~-~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~ 313 (356)
.|+ -=.+++..+||+++| ++...+++.++++|.||+.|+|.....+..+ .. .......+.
T Consensus 134 ~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--~~---~~~~~~~~~ 208 (267)
T PF04672_consen 134 EAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--ER---AEALEAVYA 208 (267)
T ss_dssp HHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--HH---HHHHHHHHH
T ss_pred HHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--HH---HHHHHHHHH
Confidence 111 147889999999987 6899999999999999999999888764321 11 111222222
Q ss_pred hhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405 314 LFQVPHGRERTKQEYSELAIKAGFKGVN 341 (356)
Q Consensus 314 ~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 341 (356)
.. ......||.+|+.++|. ||+.++
T Consensus 209 ~~-~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 209 QA-GSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp HC-CS----B-HHHHHHCCT--TSEE-T
T ss_pred cC-CCCceecCHHHHHHHcC--CCccCC
Confidence 21 12467899999999998 887664
No 119
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.87 E-value=1.3e-07 Score=84.24 Aligned_cols=97 Identities=16% Similarity=0.166 Sum_probs=75.5
Q ss_pred CCceEEEEcCCccH--HH--HHHHHhCC----CCeEEEccc-hHHHHhCCCC----------------------------
Q 018405 193 HVKKLVDVGGGLGA--TL--NMIISKYP----RIKGINYDL-PYVIKNAPSY---------------------------- 235 (356)
Q Consensus 193 ~~~~vLDiG~G~G~--~~--~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 235 (356)
+..||.-.||+||. ++ +.+.+..+ ++++++.|+ +.+++.|+.-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 45899999999995 33 33334332 467899996 7777666421
Q ss_pred ---------CCceEEEccCCC-CCC--CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 236 ---------LGIEHVGGDFFE-SVP--EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 236 ---------~~v~~~~~D~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
.+|.|..+|+.+ ++| .. |+|+|.++|.|++++...+++++++++|+|||+|++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 347888999988 444 33 9999999999999999999999999999999998884
No 120
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.6e-08 Score=83.46 Aligned_cols=101 Identities=16% Similarity=0.242 Sum_probs=81.2
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC-
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE- 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~- 251 (356)
....+++.+. +++..+|||||||+|+.+.-+++... +++.+++ +...+.|+++ .+|.++.+|-..-+|+
T Consensus 60 ~vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~ 136 (209)
T COG2518 60 MVARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE 136 (209)
T ss_pred HHHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence 3456777777 88999999999999999998888655 7888885 7777777653 5799999999985554
Q ss_pred C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+ |.|+.....-..|+ .+.+-|+|||++++...
T Consensus 137 aPyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 4 99999888777765 46667899999999765
No 121
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.84 E-value=4.3e-08 Score=84.33 Aligned_cols=139 Identities=24% Similarity=0.269 Sum_probs=100.6
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC---C---------------CCCceEEE
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP---S---------------YLGIEHVG 242 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---------------~~~v~~~~ 242 (356)
..+++.+. ..+..+||..|||.|.-+..|+++ +.+++++|+ +..++.+. . ..+|++.+
T Consensus 27 ~~~~~~l~-~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 27 VEYLDSLA-LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp HHHHHHHT-TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred HHHHHhcC-CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 33444444 567789999999999999999985 678999997 77777651 1 14688999
Q ss_pred ccCCC-CCCC---CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405 243 GDFFE-SVPE---ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP 318 (356)
Q Consensus 243 ~D~~~-~~~~---~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (356)
+|+++ +... .|+|+=...|+.++.+...+..+.+.++|+|||.++++....+....
T Consensus 104 gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~-------------------- 163 (218)
T PF05724_consen 104 GDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM-------------------- 163 (218)
T ss_dssp S-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS--------------------
T ss_pred cccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC--------------------
Confidence 99999 3222 29999999999999999999999999999999996555444332110
Q ss_pred CCc--cCCHHHHHHHHHHcCCcceeEEE
Q 018405 319 HGR--ERTKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 319 ~~~--~~t~~e~~~ll~~aGf~~~~~~~ 344 (356)
.|. ..+.+++.+++. .+|++..+..
T Consensus 164 ~GPPf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 164 EGPPFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp SSSS----HHHHHHHHT-TTEEEEEEEE
T ss_pred CCcCCCCCHHHHHHHhc-CCcEEEEEec
Confidence 111 136889999998 8888776654
No 122
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=4.2e-08 Score=87.01 Aligned_cols=139 Identities=24% Similarity=0.283 Sum_probs=92.0
Q ss_pred HHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCce----E
Q 018405 169 FNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIE----H 240 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~----~ 240 (356)
|..+.+..+...+ .+++.+. .++.+|||+|||+|.+++..++-. -.+++++|+ |..++.++.+ +++. .
T Consensus 141 FGTG~HpTT~lcL-~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~ 216 (300)
T COG2264 141 FGTGTHPTTSLCL-EALEKLL--KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQA 216 (300)
T ss_pred cCCCCChhHHHHH-HHHHHhh--cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhc
Confidence 4344443444444 3344443 478999999999999999887743 346888886 7777777653 4444 2
Q ss_pred EEccCCC-CCC-CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405 241 VGGDFFE-SVP-EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP 318 (356)
Q Consensus 241 ~~~D~~~-~~~-~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (356)
...+..+ +.. ..|+|+++= |- +-...+...+++.++|||++++.....
T Consensus 217 ~~~~~~~~~~~~~~DvIVANI-LA----~vl~~La~~~~~~lkpgg~lIlSGIl~------------------------- 266 (300)
T COG2264 217 KGFLLLEVPENGPFDVIVANI-LA----EVLVELAPDIKRLLKPGGRLILSGILE------------------------- 266 (300)
T ss_pred ccccchhhcccCcccEEEehh-hH----HHHHHHHHHHHHHcCCCceEEEEeehH-------------------------
Confidence 2223222 222 239988754 43 236799999999999999999844221
Q ss_pred CCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 319 HGRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
...+...+.+.++||.++++..-
T Consensus 267 ----~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 267 ----DQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred ----hHHHHHHHHHHhCCCeEeEEEec
Confidence 12567788889999999887665
No 123
>PRK00811 spermidine synthase; Provisional
Probab=98.83 E-value=1.3e-08 Score=91.45 Aligned_cols=98 Identities=22% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------CCCceEEEccCCC--CCCC-C-cEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------YLGIEHVGGDFFE--SVPE-A-DTI 255 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~--~~~~-~-D~i 255 (356)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|... ..+. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3578999999999999999997655568999996 888777754 2579999999876 2222 2 999
Q ss_pred EecccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 018405 256 LMKWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 256 ~~~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~ 289 (356)
++-..-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433322221 367899999999999998874
No 124
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=98.81 E-value=1.1e-08 Score=65.66 Aligned_cols=51 Identities=51% Similarity=0.830 Sum_probs=42.4
Q ss_pred HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHh
Q 018405 28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82 (356)
Q Consensus 28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~ 82 (356)
++|++|++|||||.|.+.| +++.|++||+.++... ||..+. .+.|+||+|+
T Consensus 1 MaLk~aveLgI~dii~~~g-~~~ls~~eia~~l~~~--~p~~~~-~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNAG-GGPLSLSEIAARLPTS--NPSAPP-MLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TS-BEHHHHHHTSTCT---TTHHH-HHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHcC-CCCCCHHHHHHHcCCC--CcchHH-HHHHHHHHhC
Confidence 4799999999999999875 3699999999999932 566677 9999999985
No 125
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=1.5e-07 Score=84.23 Aligned_cols=122 Identities=21% Similarity=0.266 Sum_probs=87.2
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCCC-cEEEeccc--cc---
Q 018405 196 KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPEA-DTILMKWV--LS--- 262 (356)
Q Consensus 196 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~-D~i~~~~v--lh--- 262 (356)
+|||+|||+|..+..++.+.|+++++++|+ +..++.|+.+ .++.++.+|.+++.+.. |+|+++-- -.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999996 8888777643 34566777988865544 88887311 00
Q ss_pred CC-C-----------------hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCC
Q 018405 263 SF-D-----------------DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERT 324 (356)
Q Consensus 263 ~~-~-----------------~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 324 (356)
+. + -+-...+++.+.+.|+|||.+++ |... -.
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~-----------------------------~q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL-----------------------------TQ 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC-----------------------------Cc
Confidence 01 0 02356788888889999777776 2110 12
Q ss_pred HHHHHHHHHHcC-CcceeEEEccC
Q 018405 325 KQEYSELAIKAG-FKGVNYEYGAC 347 (356)
Q Consensus 325 ~~e~~~ll~~aG-f~~~~~~~~~~ 347 (356)
.+...+++.+.| |..+...+...
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~ 266 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLF 266 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCC
Confidence 567889999999 66666666543
No 126
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.79 E-value=3.9e-07 Score=80.26 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=79.9
Q ss_pred CCceEEEEcCCccH----HHHHHHHhCC-----CCeEEEccc-hHHHHhCCCC---------------------------
Q 018405 193 HVKKLVDVGGGLGA----TLNMIISKYP-----RIKGINYDL-PYVIKNAPSY--------------------------- 235 (356)
Q Consensus 193 ~~~~vLDiG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 235 (356)
+..||.-+||+||. ++..+.+.+| .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999995 5555666675 477888896 7788777531
Q ss_pred --------CCceEEEccCCC-C-CCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 236 --------LGIEHVGGDFFE-S-VPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 236 --------~~v~~~~~D~~~-~-~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
..|.|..+|+.+ + .+.. |+|+|.+||-+++.+...+++++.+..|+|||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 248899999998 4 3444 9999999999999999999999999999999999994
No 127
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.77 E-value=3.7e-08 Score=89.51 Aligned_cols=100 Identities=16% Similarity=0.257 Sum_probs=74.1
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCC------CCCceEEEccCCCCCC--C
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPS------YLGIEHVGGDFFESVP--E 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~~~--~ 251 (356)
..+++.++ .++..+|||||||+|..+..+++..+. ..++++|. +.+++.+++ .+++.++.+|..+..+ .
T Consensus 70 a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 70 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence 44555555 667789999999999999999988764 46888996 777766653 2578899999876322 2
Q ss_pred -CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 252 -ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 252 -~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
.|+|++...+++.+ ..+.+.|+|||++++..
T Consensus 149 ~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 39999986665443 24667899999988853
No 128
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.76 E-value=2.1e-08 Score=83.83 Aligned_cols=146 Identities=17% Similarity=0.186 Sum_probs=99.8
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCce-EEEc---cCCC--CCCCCc
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIE-HVGG---DFFE--SVPEAD 253 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~-~~~~---D~~~--~~~~~D 253 (356)
.++++...+ ..+..++||+|||||-....|..... +.+++|+ ..|++.|..++-.+ ..+. +|.. .....|
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 445555555 55689999999999999988877554 3677896 78899887653221 1111 2333 222349
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc-cCCHHHHHHHH
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR-ERTKQEYSELA 332 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~e~~~ll 332 (356)
+|+...||-++.+ ...++--+...|+|||.+.+.--..+.... .. + .+..+ ..++.-...++
T Consensus 191 Li~AaDVl~YlG~--Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f~-----l--~ps~RyAH~~~YVr~~l 253 (287)
T COG4976 191 LIVAADVLPYLGA--LEGLFAGAAGLLAPGGLFAFSVETLPDDGG--------FV-----L--GPSQRYAHSESYVRALL 253 (287)
T ss_pred chhhhhHHHhhcc--hhhHHHHHHHhcCCCceEEEEecccCCCCC--------ee-----c--chhhhhccchHHHHHHH
Confidence 9999999999965 889999999999999999886433333210 00 0 11111 12566778999
Q ss_pred HHcCCcceeEEEcc
Q 018405 333 IKAGFKGVNYEYGA 346 (356)
Q Consensus 333 ~~aGf~~~~~~~~~ 346 (356)
+..||+++.+.++.
T Consensus 254 ~~~Gl~~i~~~~tt 267 (287)
T COG4976 254 AASGLEVIAIEDTT 267 (287)
T ss_pred HhcCceEEEeeccc
Confidence 99999999987763
No 129
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.74 E-value=1.5e-08 Score=86.47 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~ 251 (356)
....+++.+. +++..+|||||||+|+.+.-++.... .-+++.+|. +...+.|+++ .+|.++.+|.....++
T Consensus 60 ~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 60 MVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc
Confidence 4567777787 88999999999999999999888653 446888885 8888877653 5799999998875443
Q ss_pred -C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 252 -A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 252 -~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+ |.|++.......|. .+.+.|++||++++.-
T Consensus 139 ~apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEE
T ss_pred CCCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEE
Confidence 3 99999888876654 3666789999999943
No 130
>PRK01581 speE spermidine synthase; Validated
Probab=98.72 E-value=8.8e-08 Score=87.20 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=73.1
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------------CCCceEEEccCCC--CC-CCC-c
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------------YLGIEHVGGDFFE--SV-PEA-D 253 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------------~~~v~~~~~D~~~--~~-~~~-D 253 (356)
.++.+||+||||+|..+..+++..+..+++.+|+ +.+++.|+. .+|++++.+|..+ .. ++. |
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4678999999999999999987655568999996 888887763 2689999999876 22 222 9
Q ss_pred EEEeccccc---CCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 254 TILMKWVLS---SFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 254 ~i~~~~vlh---~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
+|++-..-. ....--...+++.|++.|+|||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999863210 011112367999999999999998885
No 131
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.72 E-value=6.6e-08 Score=81.73 Aligned_cols=95 Identities=23% Similarity=0.254 Sum_probs=69.0
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEE-------ccCCC-C-CCCC-cEEEeccccc
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVG-------GDFFE-S-VPEA-DTILMKWVLS 262 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-------~D~~~-~-~~~~-D~i~~~~vlh 262 (356)
...++|||||+|..++.++..+. ++++.|. +.+++.+++.+++.+.. -++.+ . .++. |+|++...+|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 34899999999988887777655 4888995 99999998876554432 22222 1 1233 9999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
.++ ...+.+.++++|||.|.++.+-...
T Consensus 112 WFd---le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 112 WFD---LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhc---hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 774 5899999999999877444444333
No 132
>PLN02366 spermidine synthase
Probab=98.72 E-value=1.1e-07 Score=86.10 Aligned_cols=97 Identities=23% Similarity=0.248 Sum_probs=71.6
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC----------CCceEEEccCCC---CCCC--CcE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE---SVPE--ADT 254 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~--~D~ 254 (356)
+++.+||+||||.|..+..+++. |. .+++.+|+ +.+++.+++. +|++++.+|... ..++ .|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46789999999999999999865 54 57888886 7677766542 589999999754 2322 399
Q ss_pred EEecccccCCChH--HHHHHHHHHHHhCCCCCEEEEE
Q 018405 255 ILMKWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 255 i~~~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~ 289 (356)
|++-..-++.+.. -...+++.+++.|+|||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9985443322211 1357899999999999998774
No 133
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.72 E-value=7.1e-08 Score=86.34 Aligned_cols=144 Identities=23% Similarity=0.241 Sum_probs=90.5
Q ss_pred HHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceE
Q 018405 169 FNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEH 240 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~ 240 (356)
|..+.+..++..+..+ ..+. .+..+|||||||||.+++..++... .+++++|. |..++.++.+ +++.+
T Consensus 140 FGTG~H~TT~lcl~~l-~~~~--~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELL-EKYV--KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp S-SSHCHHHHHHHHHH-HHHS--STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred ccCCCCHHHHHHHHHH-HHhc--cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 4444555555555443 3343 4567999999999999998777533 47889996 7777777653 33333
Q ss_pred EEccCCCCCC--CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405 241 VGGDFFESVP--EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP 318 (356)
Q Consensus 241 ~~~D~~~~~~--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (356)
.. ..+.+ ..|+|+++-.. +-...+...+.+.|+|||++++......
T Consensus 216 --~~-~~~~~~~~~dlvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~~------------------------ 263 (295)
T PF06325_consen 216 --SL-SEDLVEGKFDLVVANILA-----DVLLELAPDIASLLKPGGYLILSGILEE------------------------ 263 (295)
T ss_dssp --SC-TSCTCCS-EEEEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEGG------------------------
T ss_pred --EE-ecccccccCCEEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccHH------------------------
Confidence 21 12222 23998865332 3467889999999999999999443321
Q ss_pred CCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEe
Q 018405 319 HGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFL 355 (356)
Q Consensus 319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 355 (356)
..+++.+.+++ ||+..+.... +....+.++
T Consensus 264 -----~~~~v~~a~~~-g~~~~~~~~~-~~W~~l~~~ 293 (295)
T PF06325_consen 264 -----QEDEVIEAYKQ-GFELVEEREE-GEWVALVFK 293 (295)
T ss_dssp -----GHHHHHHHHHT-TEEEEEEEEE-TTEEEEEEE
T ss_pred -----HHHHHHHHHHC-CCEEEEEEEE-CCEEEEEEE
Confidence 24577788876 9998877665 333344333
No 134
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.1e-07 Score=81.54 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHH-hCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIIS-KYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 250 (356)
+..|+..+. .++..+|+|.|.|+|.++..|+. ..|.-+++.+|. ++..+.|+++ +++++..+|+.+ ..+
T Consensus 83 ~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 83 AGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc
Confidence 446666666 88999999999999999999996 557789999995 8888887654 569999999988 334
Q ss_pred CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 251 EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 251 ~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
+. |+|++ ++++ +-++|.+++++|+|||.+++.-++.+
T Consensus 162 ~~vDav~L-----Dmp~--PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 162 EDVDAVFL-----DLPD--PWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccCEEEE-----cCCC--hHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 44 98887 6755 68999999999999999999877664
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.67 E-value=7.2e-08 Score=86.21 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=72.7
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCC--C-CCCC-cEEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE--S-VPEA-DTIL 256 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~--~-~~~~-D~i~ 256 (356)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++. ++++++.+|..+ . .++. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766667888886 7776666542 578888888765 1 1233 9999
Q ss_pred ecccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 018405 257 MKWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 257 ~~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~ 289 (356)
+...-..-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 865533222222 468899999999999999985
No 136
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.65 E-value=3e-07 Score=80.29 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=74.8
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC------C--C-CC
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES------V--P-EA 252 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~------~--~-~~ 252 (356)
..+..+|||||||+|..+..++...+ +.+++.+|. +..++.|+++ ++++++.+|..+. . . ..
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44688999999999999999998765 678999996 7777766543 5799999998762 1 1 23
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|+|++- ...+.....+..+.+.|+|||.+++-+...
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 999873 223456788999999999999877755443
No 137
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.64 E-value=1.1e-07 Score=78.90 Aligned_cols=102 Identities=13% Similarity=0.225 Sum_probs=68.9
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--c
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA--D 253 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--D 253 (356)
..+++.+. ..+..+|||||||+|.++..++++ ..+++++|. +.+++.++++ ++++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 45566665 667789999999999999999987 457888885 6666665432 579999999988 55543 8
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
.|+++ .-++.+.+...++++... +.++|.+++.
T Consensus 80 ~vi~n-~Py~~~~~~i~~~l~~~~--~~~~~~l~~q 112 (169)
T smart00650 80 KVVGN-LPYNISTPILFKLLEEPP--AFRDAVLMVQ 112 (169)
T ss_pred EEEEC-CCcccHHHHHHHHHhcCC--CcceEEEEEE
Confidence 77665 444454333444443211 3356666553
No 138
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=2.7e-07 Score=87.92 Aligned_cols=111 Identities=18% Similarity=0.248 Sum_probs=79.4
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCC---CC-C
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFES---VP-E 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~---~~-~ 251 (356)
..++..++ ..+..+|||+|||+|..+..+++..++.+++++|. +.+++.++++ .+++++.+|..+. .+ .
T Consensus 234 ~~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 234 QLAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccC
Confidence 34444454 56778999999999999999999988789999996 7777766543 2467889998762 22 2
Q ss_pred -CcEEEe----cc--cccC-------CChHH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 252 -ADTILM----KW--VLSS-------FDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 252 -~D~i~~----~~--vlh~-------~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
.|.|++ +. ++.+ ...++ ..++|+++.+.|+|||++++.....
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 399984 22 1111 12121 2479999999999999999877544
No 139
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.61 E-value=2.1e-07 Score=88.76 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=80.1
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C-CceEEEccCCC-CC--C
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L-GIEHVGGDFFE-SV--P 250 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~-~~--~ 250 (356)
..++..++ ..+..+|||+|||+|..+..+++..+..+++++|. +..++.++++ . ++.+..+|... +. +
T Consensus 228 ~~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~ 306 (426)
T TIGR00563 228 QWVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE 306 (426)
T ss_pred HHHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence 34444455 66778999999999999999999888788999996 7777666432 1 23335667654 22 2
Q ss_pred -C-CcEEEe------cccccCCCh-------HH-------HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 251 -E-ADTILM------KWVLSSFDD-------EQ-------SLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 251 -~-~D~i~~------~~vlh~~~~-------~~-------~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
. .|.|++ ..++++.|+ ++ ..++|+++.+.|+|||+++..+....
T Consensus 307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2 399985 345665443 11 36899999999999999999877664
No 140
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.59 E-value=1.9e-07 Score=85.26 Aligned_cols=98 Identities=20% Similarity=0.267 Sum_probs=70.9
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------------C----CceEEEccCCCC------C
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------------L----GIEHVGGDFFES------V 249 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------~----~v~~~~~D~~~~------~ 249 (356)
+..+|||+|||-|+=+........ ..++++|+ +..+++|+.+ . ...++.+|.+.. .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 678999999999987777766432 36899997 6667766542 1 245678887752 2
Q ss_pred CC--C-cEEEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 250 PE--A-DTILMKWVLSSF--DDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 250 ~~--~-D~i~~~~vlh~~--~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+. . |+|.|.+.||+. +.+.+..+|+++.+.|+|||.+|..-+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2 999999999994 566788899999999999999998543
No 141
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=5.3e-07 Score=86.45 Aligned_cols=104 Identities=24% Similarity=0.271 Sum_probs=75.5
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-C-CcEEEec--
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-E-ADTILMK-- 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~-~D~i~~~-- 258 (356)
..+..+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+|+++.+|..+..+ . .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 45678999999999999998888654 458999996 7777666543 468899999877323 2 3999851
Q ss_pred ----ccc-------cCCChHH-------HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 259 ----WVL-------SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 259 ----~vl-------h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
.++ .+++.++ ..++|+++.+.|+|||+++.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 1223222 24689999999999999999876554
No 142
>PLN02672 methionine S-methyltransferase
Probab=98.55 E-value=7.5e-07 Score=92.06 Aligned_cols=122 Identities=20% Similarity=0.163 Sum_probs=85.0
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------------------CCceEEEccCCCCCC
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------------------LGIEHVGGDFFESVP 250 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------------------~~v~~~~~D~~~~~~ 250 (356)
..+|||+|||+|..+..+++.+|..+++++|+ +.+++.|+.+ +|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999996 7777666321 369999999988543
Q ss_pred C----CcEEEeccc--------------c--------cCC-------C---hH----HHHHHHHHHHHhCCCCCEEEEEe
Q 018405 251 E----ADTILMKWV--------------L--------SSF-------D---DE----QSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 251 ~----~D~i~~~~v--------------l--------h~~-------~---~~----~~~~~L~~~~~~L~pgG~lii~e 290 (356)
. .|+|+++-- . |.+ . ++ -..+++..+.+.|+|||++++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2 388886421 1 100 0 01 125677788888999987775 3
Q ss_pred cccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH-HHHHHcCCcceeEEEc
Q 018405 291 VTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS-ELAIKAGFKGVNYEYG 345 (356)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~~~~~~~ 345 (356)
.-. ...+.+. +++++.||+.++++..
T Consensus 278 iG~-----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG-----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECc-----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 211 1234566 5888888888776654
No 143
>PRK03612 spermidine synthase; Provisional
Probab=98.55 E-value=3e-07 Score=89.59 Aligned_cols=97 Identities=23% Similarity=0.315 Sum_probs=73.5
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC-------------CCceEEEccCCC---CCCCC-
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY-------------LGIEHVGGDFFE---SVPEA- 252 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~---~~~~~- 252 (356)
+++.+|||||||+|..+..+++ +|. .+++.+|+ +++++.++++ +|++++.+|..+ ..++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4678999999999999999987 455 68999996 8888887651 589999999876 12333
Q ss_pred cEEEecccccCCChH---HHHHHHHHHHHhCCCCCEEEEE
Q 018405 253 DTILMKWVLSSFDDE---QSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 253 D~i~~~~vlh~~~~~---~~~~~L~~~~~~L~pgG~lii~ 289 (356)
|+|++...-...+.. -..++++++++.|+|||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 999986443221111 1246899999999999998884
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.54 E-value=4.8e-07 Score=86.75 Aligned_cols=109 Identities=22% Similarity=0.202 Sum_probs=77.4
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC---CCC-
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES---VPE- 251 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~~- 251 (356)
+...+. ..+..+|||+|||+|..+..+++.. +..+++++|. +..++.++++ .+++++.+|+.+. .+.
T Consensus 242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~ 320 (444)
T PRK14902 242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEK 320 (444)
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhccc
Confidence 333444 5667899999999999999999876 6779999996 7776665432 4588999998762 333
Q ss_pred CcEEEecc------cccCCC-------hHH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 252 ADTILMKW------VLSSFD-------DEQ-------SLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 252 ~D~i~~~~------vlh~~~-------~~~-------~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
.|+|++.- ++.+.| .++ ...+|+.+.+.|+|||+++......
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 39998732 121111 112 2468999999999999998765443
No 145
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.53 E-value=1.1e-06 Score=73.82 Aligned_cols=120 Identities=25% Similarity=0.280 Sum_probs=90.2
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCC-CCCC---C--cEEEecccccCCChH
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-SVPE---A--DTILMKWVLSSFDDE 267 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~---~--D~i~~~~vlh~~~~~ 267 (356)
..++|||||=+....+.- ++-..++.+|+.. ..-.+.+.||++ |.|. . |+|+++.||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s~---~~~fdvt~IDLns--------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACST---SGWFDVTRIDLNS--------QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCcccc---cCceeeEEeecCC--------CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 379999999766544432 3555688888632 123467889999 7763 1 999999999999966
Q ss_pred -HHHHHHHHHHHhCCCCCE-----EEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405 268 -QSLKLLKNCYKALPDGGK-----LLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN 341 (356)
Q Consensus 268 -~~~~~L~~~~~~L~pgG~-----lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 341 (356)
+.-++|+++++.|+|+|. |+|+-+.. . ..|.+..+.+.|.++++.-||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-------------------C---v~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP-------------------C---VTNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch-------------------H---hhcccccCHHHHHHHHHhCCcEEEE
Confidence 455999999999999999 77753321 0 1266777899999999999999998
Q ss_pred EEEcc
Q 018405 342 YEYGA 346 (356)
Q Consensus 342 ~~~~~ 346 (356)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 76653
No 146
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.52 E-value=6.7e-07 Score=85.45 Aligned_cols=109 Identities=19% Similarity=0.143 Sum_probs=79.4
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C----CC
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S----VP 250 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~----~~ 250 (356)
+...+. ..+..+|||+|||+|..+..+++... ..+++++|. +..++.++++ .+|+++.+|... + ..
T Consensus 244 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 244 VAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 334444 56778999999999999999998764 468999996 7777666442 468899999876 3 22
Q ss_pred C--CcEEEec------ccccCCCh-------HH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 251 E--ADTILMK------WVLSSFDD-------EQ-------SLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 251 ~--~D~i~~~------~vlh~~~~-------~~-------~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
. .|.|++- .++++.++ ++ ..++|+++.+.|+|||+|+..+...
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2 3999862 35554443 11 3688999999999999999876554
No 147
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.52 E-value=4.7e-07 Score=75.44 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=74.3
Q ss_pred HHHHHhcCCCC--CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCC-CceEEEccCCC--CCCCC--cE
Q 018405 183 KVLESYKGFEH--VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYL-GIEHVGGDFFE--SVPEA--DT 254 (356)
Q Consensus 183 ~~~~~~~~~~~--~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~v~~~~~D~~~--~~~~~--D~ 254 (356)
.-++.+. +.+ ..-|||||||+|..+..+.. ++-..+++|. |.|++.|.+.. .-.++.+|+-+ |++.+ |.
T Consensus 39 RaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 39 RALELLA-LPGPKSGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred HHHHHhh-CCCCCCcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence 3344444 444 78899999999999988877 5677999996 99999987531 13577788877 55554 87
Q ss_pred EEeccccc---------CCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 255 ILMKWVLS---------SFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 255 i~~~~vlh---------~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
+++...+. |.|......++..++..|++|++.++
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 76654442 22333455778889999999998877
No 148
>PHA03412 putative methyltransferase; Provisional
Probab=98.52 E-value=5.7e-07 Score=77.11 Aligned_cols=94 Identities=12% Similarity=0.130 Sum_probs=70.3
Q ss_pred CceEEEEcCCccHHHHHHHHhC---CCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC-cEEEecccccCCCh
Q 018405 194 VKKLVDVGGGLGATLNMIISKY---PRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDD 266 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~ 266 (356)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.+++. .++.++.+|+.. +.+.. |+|+++--.+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998864 4568999996 8888888765 678999999987 44333 99998765553221
Q ss_pred ----------HHHHHHHHHHHHhCCCCCEEEE
Q 018405 267 ----------EQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 267 ----------~~~~~~L~~~~~~L~pgG~lii 288 (356)
.-...+++++.++++||+ +|+
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 124568899998666665 444
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.51 E-value=1.8e-07 Score=79.11 Aligned_cols=91 Identities=23% Similarity=0.358 Sum_probs=67.0
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------CCCceEEEccCCCC----CCCC--cEEEecccc
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------YLGIEHVGGDFFES----VPEA--DTILMKWVL 261 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~~----~~~~--D~i~~~~vl 261 (356)
..+||||||.|.++..++..+|+..++|+|. ...+..+.+ .+++.++.+|...- ++++ |-|.+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--- 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--- 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE---
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe---
Confidence 3899999999999999999999999999995 555554432 37899999998761 3333 655553
Q ss_pred cCCChHH-----------HHHHHHHHHHhCCCCCEEEEEe
Q 018405 262 SSFDDEQ-----------SLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 262 h~~~~~~-----------~~~~L~~~~~~L~pgG~lii~e 290 (356)
+||+. ...+|+.+.+.|+|||.|.+..
T Consensus 96 --FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 96 --FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp --S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred --CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 23331 3589999999999999998865
No 150
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.48 E-value=5.3e-07 Score=76.61 Aligned_cols=112 Identities=18% Similarity=0.276 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC---------------CCCceEEEcc
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS---------------YLGIEHVGGD 244 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~D 244 (356)
...+++.+. +.+...++|+|||.|......+..++--+++|+++ +...+.|.. ..++++..+|
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 345666676 77889999999999999998887776666999985 654443321 1467889999
Q ss_pred CCC-C-----CCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405 245 FFE-S-----VPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV 296 (356)
Q Consensus 245 ~~~-~-----~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~ 296 (356)
+.+ + +.++|+|++++.+. + ++...-|.+....||||.+++-...+.+..
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred ccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 987 3 24579999998864 3 456667788888999999988776666543
No 151
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.43 E-value=1.6e-06 Score=82.58 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=75.5
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C-C-CC-CcEEEe-
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S-V-PE-ADTILM- 257 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~-~-~~-~D~i~~- 257 (356)
..+..+|||+|||+|..+..++... ++.+++++|. +..++.++++ .+++++.+|... + . ++ .|.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5677899999999999999999876 4578999996 7777666543 457888999876 3 2 22 399986
Q ss_pred -----cccccC-------CChH-------HHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 258 -----KWVLSS-------FDDE-------QSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 258 -----~~vlh~-------~~~~-------~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
..++.. ++.+ ...++|.++.+.|+|||.++.......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 222222 1211 126789999999999999888766554
No 152
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.42 E-value=9.5e-07 Score=77.76 Aligned_cols=103 Identities=21% Similarity=0.315 Sum_probs=77.4
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------C----CceEEEccCCCC-
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------L----GIEHVGGDFFES- 248 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~----~v~~~~~D~~~~- 248 (356)
.+++.+. ++...++|+|||-|+=+...-++-- -.++++|+ ...+++|+++ . .+.|+.+|.+..
T Consensus 109 ~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~ 185 (389)
T KOG1975|consen 109 VLINLYT--KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER 185 (389)
T ss_pred HHHHHHh--ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence 4555553 5678899999999987777665321 25899998 5558888654 1 267888888751
Q ss_pred ----C----CCCcEEEecccccC-C-ChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 249 ----V----PEADTILMKWVLSS-F-DDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 249 ----~----~~~D~i~~~~vlh~-~-~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
. |..|+|.|.+++|+ | +.+.+.-+|+++.+.|+|||.+|-
T Consensus 186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 1 22499999999998 3 566788999999999999999887
No 153
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.42 E-value=1.9e-06 Score=76.83 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=73.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CC--CCCcEEEec-
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SV--PEADTILMK- 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~--~~~D~i~~~- 258 (356)
..+..+|||+|||+|..+..+++... ...++++|. +..++.++++ .+++++..|... +. +..|.|++-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 55678999999999999999988775 358999996 7776655432 467888888755 22 234999862
Q ss_pred -----ccccC-------CChHH-------HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 259 -----WVLSS-------FDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 259 -----~vlh~-------~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
.++.. ++.++ ..++|+++.+.|+|||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 12221 22222 24699999999999999987765543
No 154
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.37 E-value=1.3e-06 Score=74.48 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=79.1
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEE-ccCCCCC----CCC-cEE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVG-GDFFESV----PEA-DTI 255 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~-~D~~~~~----~~~-D~i 255 (356)
.+++++|||||.+.|..+..++...| +.+.+.+|. ++..+.|+++ ++|+.+. +|..+.. .+. |+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 56889999999999999999999999 788999996 8888888764 5688888 5776521 222 999
Q ss_pred EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
++- ....+-.+.|..+.++|+|||.+++-+...+.
T Consensus 137 FID-----adK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 873 33345689999999999999988886655543
No 155
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.36 E-value=4.8e-06 Score=66.52 Aligned_cols=112 Identities=20% Similarity=0.314 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhC-CCCCCceEEEccCCC-C-----CC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNA-PSYLGIEHVGGDFFE-S-----VP 250 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a-~~~~~v~~~~~D~~~-~-----~~ 250 (356)
.++.+.+.++ +....-|||+|.|||.++.+++++- +....+.++. ++..... +..+.++++.||.++ . .+
T Consensus 36 lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~ 114 (194)
T COG3963 36 LARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK 114 (194)
T ss_pred HHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence 3455566666 7788899999999999999998854 5555666664 5544443 445889999999886 3 22
Q ss_pred C--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 251 E--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 251 ~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
. .|.|++..-+-.+|-....++|+++...|++||.++.....
T Consensus 115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 2 29999999999999888999999999999999999887654
No 156
>PLN02476 O-methyltransferase
Probab=98.35 E-value=2.5e-06 Score=75.65 Aligned_cols=98 Identities=15% Similarity=0.097 Sum_probs=75.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC--------C-CC
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV--------P-EA 252 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~--------~-~~ 252 (356)
..+..+|||||+++|..+..++...| +-+++.+|. ++..+.|++. ++|+++.+|..+.. . ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 55789999999999999999999875 557888886 7666666542 68999999986621 1 23
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|+|++- -+..+-...++.+.+.|+|||.+++-+...
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 998874 234567899999999999999988755444
No 157
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.34 E-value=4.1e-06 Score=75.95 Aligned_cols=145 Identities=16% Similarity=0.077 Sum_probs=92.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEE----ccCCCC--CCC--CcEE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVG----GDFFES--VPE--ADTI 255 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~----~D~~~~--~~~--~D~i 255 (356)
...++||||||+|.....++.+.++++++++|+ +..++.|+.. ++|++.. .+++.. .+. .|+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999998888888889999999996 7777777642 3566653 233332 122 2999
Q ss_pred EecccccCCChHH---HHHHHHHH----------------HHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh
Q 018405 256 LMKWVLSSFDDEQ---SLKLLKNC----------------YKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ 316 (356)
Q Consensus 256 ~~~~vlh~~~~~~---~~~~L~~~----------------~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (356)
+|+--+|.-..+. ...-.+++ .+++.+||.+-++..+..+. ..+.....+ +..+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS------~~~~~~~gw-ftsm 266 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES------KAFAKQVLW-FTSL 266 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH------HHHHhhCcE-EEEE
Confidence 9998888644332 11222222 23445777776666655432 111111111 1111
Q ss_pred cCCCccCCHHHHHHHHHHcCCcceeEEEcc
Q 018405 317 VPHGRERTKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 317 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
=++.-+.+.+.+.|++.|.+.++++.+.
T Consensus 267 --v~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 267 --VSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred --eeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 1455589999999999999888888764
No 158
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.34 E-value=3.9e-06 Score=80.48 Aligned_cols=100 Identities=12% Similarity=0.097 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC----
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES---- 248 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---- 248 (356)
....+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++.+|+.+.
T Consensus 285 l~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 285 MVARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ 361 (443)
T ss_pred HHHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence 3445555554 5566899999999999999999875 57999996 8888777643 4689999998652
Q ss_pred -CCC--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 249 -VPE--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 249 -~~~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
++. .|+|++. -|.......++.+.+ ++|++.+++
T Consensus 362 ~~~~~~fD~Vi~d-----PPr~g~~~~~~~l~~-~~~~~ivyv 398 (443)
T PRK13168 362 PWALGGFDKVLLD-----PPRAGAAEVMQALAK-LGPKRIVYV 398 (443)
T ss_pred hhhcCCCCEEEEC-----cCCcChHHHHHHHHh-cCCCeEEEE
Confidence 222 2998773 222223455555555 588887777
No 159
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.34 E-value=2e-06 Score=75.04 Aligned_cols=105 Identities=15% Similarity=0.255 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHH-hCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIIS-KYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 250 (356)
+..|+..++ +.++.+|||.|.|+|.++..|+. -.|.-++..+|. ++..+.|++. ++|++...|+.+ .++
T Consensus 29 ~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 29 ISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 345666676 88999999999999999999997 458889999995 7777666542 579999999865 342
Q ss_pred ----CC-cEEEecccccCCChHHHHHHHHHHHHhC-CCCCEEEEEeccc
Q 018405 251 ----EA-DTILMKWVLSSFDDEQSLKLLKNCYKAL-PDGGKLLNVNVTI 293 (356)
Q Consensus 251 ----~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L-~pgG~lii~e~~~ 293 (356)
.. |.|++ ++|+ +-..+..+.++| +|||++.+.-+..
T Consensus 108 ~~~~~~~DavfL-----Dlp~--Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPD--PWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp TT-TTSEEEEEE-----ESSS--GGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccccCcccEEEE-----eCCC--HHHHHHHHHHHHhcCCceEEEECCCH
Confidence 22 88887 5655 578899999999 8999999966544
No 160
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.32 E-value=3e-06 Score=75.09 Aligned_cols=92 Identities=16% Similarity=0.308 Sum_probs=63.0
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC-CCCCCc
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE-SVPEAD 253 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~D 253 (356)
....+++.++ ..+..+|||||||+|.++..++++.+. ++++|. +.+++.++. .++++++.+|+.+ +.+..|
T Consensus 17 i~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d 93 (253)
T TIGR00755 17 VIQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP 93 (253)
T ss_pred HHHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence 3456666665 667889999999999999999998875 677774 666655543 3679999999988 555334
Q ss_pred --EEEecccccCCChHHHHHHHHHHHH
Q 018405 254 --TILMKWVLSSFDDEQSLKLLKNCYK 278 (356)
Q Consensus 254 --~i~~~~vlh~~~~~~~~~~L~~~~~ 278 (356)
.+++++.-++++ ..++.++..
T Consensus 94 ~~~~vvsNlPy~i~----~~il~~ll~ 116 (253)
T TIGR00755 94 KQLKVVSNLPYNIS----SPLIFKLLE 116 (253)
T ss_pred CcceEEEcCChhhH----HHHHHHHhc
Confidence 344445545554 344444443
No 161
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.31 E-value=3.9e-07 Score=77.51 Aligned_cols=97 Identities=21% Similarity=0.257 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC-------CC--CCc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES-------VP--EAD 253 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-------~~--~~D 253 (356)
.++.+|||||+++|..+..+++..| +.+++.+|. +...+.|++. ++|+++.+|..+. .+ ..|
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3689999999999999999999887 589999996 7766666542 6899999998651 11 229
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
+|++-. ...+....+..+.+.|+|||.+++-+...
T Consensus 124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred EEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccc
Confidence 998843 33457888999999999999888855544
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.29 E-value=4.1e-06 Score=74.36 Aligned_cols=82 Identities=17% Similarity=0.288 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC-CCCCCc
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE-SVPEAD 253 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~~D 253 (356)
....+++.+. ..+..+|||||||+|.++..++++. .+++++|. +.+++.+++ .++++++.+|+.+ +++..|
T Consensus 17 ~~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d 93 (258)
T PRK14896 17 VVDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN 93 (258)
T ss_pred HHHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence 3456666665 6677899999999999999999984 46888885 666666543 3679999999988 666568
Q ss_pred EEEecccccCCC
Q 018405 254 TILMKWVLSSFD 265 (356)
Q Consensus 254 ~i~~~~vlh~~~ 265 (356)
.|+++.. ++.+
T Consensus 94 ~Vv~NlP-y~i~ 104 (258)
T PRK14896 94 KVVSNLP-YQIS 104 (258)
T ss_pred EEEEcCC-cccC
Confidence 8777544 4444
No 163
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.27 E-value=2.5e-06 Score=70.96 Aligned_cols=101 Identities=19% Similarity=0.119 Sum_probs=65.6
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC---------CCCceEEEccCCCC------CCC-CcE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS---------YLGIEHVGGDFFES------VPE-ADT 254 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~------~~~-~D~ 254 (356)
..+..+|||+|||+|..+..++..++..+++..|.+++++..+. ..++.+...|..++ .+. .|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34678999999999999999988877778888897555543322 25678888776552 122 399
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|+.+.++|+- +....+++-+.++|+|+|.+++....+
T Consensus 123 IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999964 668999999999999999877766554
No 164
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.26 E-value=2.1e-06 Score=73.99 Aligned_cols=95 Identities=20% Similarity=0.315 Sum_probs=68.4
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----C--CCceEEEccCCC---C-CCCC--cEEEecccc
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----Y--LGIEHVGGDFFE---S-VPEA--DTILMKWVL 261 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~---~-~~~~--D~i~~~~vl 261 (356)
..+||||||.|.++..+++++|+..++|++. ...+..+.+ . .++.++++|... . .+++ |-|.+.+.=
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD 129 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD 129 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence 5899999999999999999999999999995 444443322 1 488999998765 1 3342 655553221
Q ss_pred cCCChHH-------HHHHHHHHHHhCCCCCEEEEEe
Q 018405 262 SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 262 h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e 290 (356)
-|+... ...+|+.+.+.|+|||.|.+..
T Consensus 130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 122111 3479999999999999999854
No 165
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.24 E-value=2.1e-06 Score=81.65 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=77.2
Q ss_pred hhhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCC---CCceEEEEcCCccHHHHHHHHhC----CCCeEEEccc-h
Q 018405 155 IYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFE---HVKKLVDVGGGLGATLNMIISKY----PRIKGINYDL-P 226 (356)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~-~ 226 (356)
.|+-+++|+..-..|.+++. ..+.+.....+ +...|+|||||+|.++...+++. ...++.+++- +
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~-------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIE-------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHH-------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred cHhhHhcCHHHHHHHHHHHH-------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 35666777665555555442 23333333111 25689999999999987776654 3468888883 4
Q ss_pred HHHHhC----C--C-CCCceEEEccCCC-CCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEE
Q 018405 227 YVIKNA----P--S-YLGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLL 287 (356)
Q Consensus 227 ~~~~~a----~--~-~~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~li 287 (356)
...... . . .++|+++.+|+.+ ..|+- |+|++-..-.....|-....|..+.+.|+|||.++
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 433221 1 1 1789999999999 66654 99988655444444556677888899999998654
No 166
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.23 E-value=3.7e-06 Score=74.82 Aligned_cols=97 Identities=25% Similarity=0.350 Sum_probs=75.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCC---CCCC-CcEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE---SVPE-ADTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~-~D~i~~ 257 (356)
.+++||-||+|.|..++++++..+--+++.+|+ +.+++.+++. +|++++..|..+ ..+. .|+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 347999999999999999999888788999996 8898888653 789999999876 2333 399988
Q ss_pred cccccCCChH--HHHHHHHHHHHhCCCCCEEEEE
Q 018405 258 KWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 258 ~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~ 289 (356)
-..=..-+-+ -...+++.|+++|+|+|.++..
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4432210000 1378999999999999999997
No 167
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.22 E-value=1.2e-05 Score=72.01 Aligned_cols=113 Identities=15% Similarity=0.252 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC----CCceE--EEccCC---CCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY----LGIEH--VGGDFF---ESV 249 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~~v~~--~~~D~~---~~~ 249 (356)
+.++...+++ -.+.+|||+|+|.|..+-+..+.++.. +++.+|. +.+.+.++.. ..... ...++. .+.
T Consensus 22 l~El~~r~p~-f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 100 (274)
T PF09243_consen 22 LSELRKRLPD-FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF 100 (274)
T ss_pred HHHHHHhCcC-CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence 3444445553 356799999999999888888888754 5788895 7776655431 11111 011111 123
Q ss_pred CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405 250 PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV 296 (356)
Q Consensus 250 ~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~ 296 (356)
+..|+|+++++|-.++++....+++++.+.+.+ .|+|+|+-.+..
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 344999999999999988888999999888775 999999876543
No 168
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.22 E-value=4.6e-06 Score=74.62 Aligned_cols=81 Identities=12% Similarity=0.237 Sum_probs=59.0
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--c
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--D 253 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D 253 (356)
...+++.+. ..+..+|||||||+|.++..++++.+ +++++|. +.+++.+++. ++++++.+|+.+ +.++- |
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 345566565 66778999999999999999999876 6778885 7777766543 589999999988 55442 5
Q ss_pred EEEecccccCCC
Q 018405 254 TILMKWVLSSFD 265 (356)
Q Consensus 254 ~i~~~~vlh~~~ 265 (356)
.|+++ .-++.+
T Consensus 108 ~vv~N-lPY~is 118 (272)
T PRK00274 108 KVVAN-LPYNIT 118 (272)
T ss_pred eEEEe-CCccch
Confidence 55544 444443
No 169
>PLN02823 spermine synthase
Probab=98.18 E-value=6.1e-06 Score=75.54 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=70.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCCC--C-CCC-cEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFES--V-PEA-DTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~--~-~~~-D~i~~ 257 (356)
.+.+||.||+|.|..+..+++..+..+++.+|+ +.+++.+++ .+|++++.+|...- . ++. |+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 568999999999999999998666667888996 888877764 26899999998762 2 223 99998
Q ss_pred cccccCCCh--H---HHHHHHH-HHHHhCCCCCEEEEE
Q 018405 258 KWVLSSFDD--E---QSLKLLK-NCYKALPDGGKLLNV 289 (356)
Q Consensus 258 ~~vlh~~~~--~---~~~~~L~-~~~~~L~pgG~lii~ 289 (356)
-.. ..+.. . -...+++ .+++.|+|||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 521 11100 0 0346787 899999999998764
No 170
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.18 E-value=9.7e-06 Score=71.79 Aligned_cols=95 Identities=21% Similarity=0.196 Sum_probs=71.8
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~ 263 (356)
..+-|||||||+|.++...+.+. -.++..++-..+.+.|++. +||.++.|.+.+ ..|+- |+|++--.-+-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m 255 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM 255 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence 45789999999999988766643 3367777777777776542 789999999999 78876 99988665555
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
+-+|.....--.+++.|+|.|+++=
T Consensus 256 L~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 256 LVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcccC
Confidence 5556555555668899999998653
No 171
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.15 E-value=1e-05 Score=68.53 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=63.3
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC--C-C-CcEEEecccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV--P-E-ADTILMKWVL 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~--~-~-~D~i~~~~vl 261 (356)
+..+|||+|||+|.++..++.+.. .+++++|. +..++.++++ .+++++.+|+++.. . . .|+|++.--.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999987665543 57888885 7766655432 46889999987622 2 2 3999986553
Q ss_pred cCCChHHHHHHHHHHHH--hCCCCCEEEEEe
Q 018405 262 SSFDDEQSLKLLKNCYK--ALPDGGKLLNVN 290 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~--~L~pgG~lii~e 290 (356)
+. .-...+++.+.+ .|+|++.+++-.
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 32 123445555544 378888766643
No 172
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=7.5e-06 Score=67.94 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=67.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC--CCCeEEEccc-hHHHHhCCCC----------------CCceEEEccCCCCCC-
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY--PRIKGINYDL-PYVIKNAPSY----------------LGIEHVGGDFFESVP- 250 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~----------------~~v~~~~~D~~~~~~- 250 (356)
+.+..+.||||+|+|.++..++.-. ++...+++|. |+.++.+.+. .++.+++||...-++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5688999999999999988777432 4444488885 8887766542 568899999988333
Q ss_pred CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 251 EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 251 ~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
.+ |.|.+-.. ..++.+++-.-|+|||+++|
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEE
Confidence 33 99887632 45666777788999999998
No 173
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.12 E-value=1.9e-05 Score=71.72 Aligned_cols=104 Identities=13% Similarity=0.236 Sum_probs=76.5
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC----CCeEEEccc-hHHHHhCCC------CCCceE--EEccCCCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP----RIKGINYDL-PYVIKNAPS------YLGIEH--VGGDFFES 248 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------~~~v~~--~~~D~~~~ 248 (356)
..|+..++ +...|+|+|||+|.-+..|++.+. ..+++.+|+ ...++.+.. .+.+++ +.+|+.+.
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 45555554 556899999999998887777663 467999996 455554422 255665 78888652
Q ss_pred ---CC-----C-CcEE-EecccccCCChHHHHHHHHHHHH-hCCCCCEEEE
Q 018405 249 ---VP-----E-ADTI-LMKWVLSSFDDEQSLKLLKNCYK-ALPDGGKLLN 288 (356)
Q Consensus 249 ---~~-----~-~D~i-~~~~vlh~~~~~~~~~~L~~~~~-~L~pgG~lii 288 (356)
.+ . ..++ ++-+++.+++++++..+|+++++ .|+|||.++|
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 11 1 2555 55679999999999999999999 9999998888
No 174
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.12 E-value=6.8e-06 Score=68.98 Aligned_cols=142 Identities=20% Similarity=0.149 Sum_probs=94.2
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCc--eEEEccCCC-CCCCC--cEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGI--EHVGGDFFE-SVPEA--DTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v--~~~~~D~~~-~~~~~--D~i~~~~vlh~ 263 (356)
+....++|||||.|.....+..+.- -+.+..|. ..+++.++.. +.+ .+..+|-.. ++.+. |+|+.+..+|.
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGV-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcch-hheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 3557899999999999999998652 25778885 7788888765 444 455677655 66665 99999999996
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccC------CHHHHHHHHHHcCC
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRER------TKQEYSELAIKAGF 337 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------t~~e~~~ll~~aGf 337 (356)
.+| ...-+.+|..+|||+|.++-. .+..+. . .+.....-+..+-. .+|... ...++-.+|..|||
T Consensus 150 ~Nd--LPg~m~~ck~~lKPDg~Fias-mlggdT----L-yELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF 220 (325)
T KOG2940|consen 150 TND--LPGSMIQCKLALKPDGLFIAS-MLGGDT----L-YELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGF 220 (325)
T ss_pred hcc--CchHHHHHHHhcCCCccchhH-Hhcccc----H-HHHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCc
Confidence 643 889999999999999977652 222111 0 11111111111111 122211 24578889999999
Q ss_pred cceeEE
Q 018405 338 KGVNYE 343 (356)
Q Consensus 338 ~~~~~~ 343 (356)
....+-
T Consensus 221 ~m~tvD 226 (325)
T KOG2940|consen 221 SMLTVD 226 (325)
T ss_pred ccceec
Confidence 987653
No 175
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.12 E-value=8.5e-06 Score=71.29 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=73.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCC-------CCCceEEEccCCCC--C-------CCC
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFES--V-------PEA 252 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~--~-------~~~ 252 (356)
..+..+|||||.++|..+..++...| +.+++.+|. +...+.|++ .++|+++.||..+. . ...
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34678999999999999999998874 678999985 766666543 27899999988662 1 123
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|+|++-. ........++.+.+.|+|||.+++-+...
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~ 193 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence 9998842 23456788999999999999977744433
No 176
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.09 E-value=1.3e-05 Score=81.00 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=70.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCC---CCC-CcEEEecc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFES---VPE-ADTILMKW 259 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~---~~~-~D~i~~~~ 259 (356)
+..+|||+|||+|.++..++.. ...+++++|. +.+++.++++ ++++++.+|+++. .+. .|+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 5689999999999999999985 2336999996 7777777643 3689999998762 222 39999831
Q ss_pred cc-------cC-C-ChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 260 VL-------SS-F-DDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 260 vl-------h~-~-~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
-- .. + ...+...+++.+.+.|+|||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 10 00 0 0123567899999999999988774
No 177
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.07 E-value=8.1e-05 Score=64.37 Aligned_cols=145 Identities=12% Similarity=0.109 Sum_probs=82.2
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHH-hCCCCCCce-EEEccCCC-C---C-CC-
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIK-NAPSYLGIE-HVGGDFFE-S---V-PE- 251 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-~a~~~~~v~-~~~~D~~~-~---~-~~- 251 (356)
...+++.++...+..++||+|||+|.++..+++. +-.+++++|. +.++. ..+..+++. +...|+.. . . ++
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 4455555542235679999999999999999986 3457999996 53444 455556654 33334442 1 1 11
Q ss_pred --CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE-EecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405 252 --ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN-VNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY 328 (356)
Q Consensus 252 --~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 328 (356)
.|+++++.. .+|..+.++|+| |.+++ +.+-.+-.+.. ........+-. ....-.+++
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~--~~~~giv~~~~-------~~~~~~~~~ 201 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGREK--KNKKGVVRDKE-------AIALALHKV 201 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHhh--cCcCCeecCHH-------HHHHHHHHH
Confidence 165555433 357789999999 65544 33322211100 00000011100 011234567
Q ss_pred HHHHHHcCCcceeEEEcc
Q 018405 329 SELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 329 ~~ll~~aGf~~~~~~~~~ 346 (356)
...+.+.||++..+.+++
T Consensus 202 ~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 202 IDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHcCCCeEeeEEECC
Confidence 778888999999888875
No 178
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.05 E-value=8.8e-05 Score=65.38 Aligned_cols=134 Identities=19% Similarity=0.252 Sum_probs=91.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchH-H-------HHhCC---C---------------------------
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPY-V-------IKNAP---S--------------------------- 234 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~-~-------~~~a~---~--------------------------- 234 (356)
...+||-=|||.|.++..++.. +..+.+.+... | +.... +
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4579999999999999999997 34444444321 1 11100 0
Q ss_pred ---------CCCceEEEccCCC-CCCC----C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC
Q 018405 235 ---------YLGIEHVGGDFFE-SVPE----A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN 299 (356)
Q Consensus 235 ---------~~~v~~~~~D~~~-~~~~----~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~ 299 (356)
.+++....|||.+ ..++ . |+|+.++.+.-- ++....|+.|+++|||||..|=+.+..-.....
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~ 211 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM 211 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEecCCccccCCCC
Confidence 0357788899988 3223 2 999888777654 458999999999999999887777665432100
Q ss_pred chhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405 300 SATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 344 (356)
+ .. ....-+.+.+|+..+.++.||++++-..
T Consensus 212 ----------~---~~-~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 212 ----------S---IP-NEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ----------C---CC-CCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 00 0123457899999999999999986544
No 179
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.04 E-value=2.3e-05 Score=70.68 Aligned_cols=90 Identities=20% Similarity=0.336 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------CCCceEEEccCCC-CCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFE-SVP 250 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~-~~~ 250 (356)
.+..+++... ..+..+|||||||+|.++..+++... +++++|+ +.+++.+++ .++++++.+|+.+ +.+
T Consensus 24 i~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 24 VLDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP 100 (294)
T ss_pred HHHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence 3456666665 66778999999999999999998754 5777775 666665543 3579999999987 555
Q ss_pred CCcEEEecccccCCChHHHHHHH
Q 018405 251 EADTILMKWVLSSFDDEQSLKLL 273 (356)
Q Consensus 251 ~~D~i~~~~vlh~~~~~~~~~~L 273 (356)
..|+|++ +.-++++.+-..++|
T Consensus 101 ~~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 101 YFDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred ccCEEEe-cCCcccCcHHHHHHH
Confidence 5587665 555556555444555
No 180
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.04 E-value=3.1e-05 Score=72.70 Aligned_cols=98 Identities=16% Similarity=0.084 Sum_probs=68.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCCC------C-CCcEEE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFESV------P-EADTIL 256 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------~-~~D~i~ 256 (356)
+..+|||+|||+|.++...+.. ...+++.+|. +.+++.++++ ++++++.+|+++.. . ..|+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5689999999999998775542 3448999996 7777766542 26889999988721 1 239999
Q ss_pred ecccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 257 MKWVLSSFDD-------EQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 257 ~~~vlh~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+.---..-+. .....+++.+.+.|+|||.++.+..
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8533211111 1244566778999999999998653
No 181
>PRK00536 speE spermidine synthase; Provisional
Probab=98.03 E-value=1.8e-05 Score=69.62 Aligned_cols=89 Identities=11% Similarity=0.099 Sum_probs=67.4
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCCCCCC-CcEEEecc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFESVPE-ADTILMKW 259 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~~~-~D~i~~~~ 259 (356)
..+.+||-||||.|..++++++. |. +++.+|+ +.+++.+++. +|++++.. +.+...+ .|+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 46799999999999999999986 54 8888886 8888777662 78887762 2222222 39999754
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
. . .....+.++++|+|||.++..-
T Consensus 148 ~----~---~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 E----P---DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C----C---ChHHHHHHHHhcCCCcEEEECC
Confidence 3 1 2677899999999999999853
No 182
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.03 E-value=9.8e-06 Score=70.58 Aligned_cols=95 Identities=23% Similarity=0.206 Sum_probs=74.8
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChH-
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDE- 267 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~- 267 (356)
....++|+|||.|-++. ..|.+-.++.|+ ...+.-+++.+.......|+.. |.++. |..+...++||++..
T Consensus 45 ~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 56789999999998764 238888999997 5566666554444678889888 66543 999999999999754
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEec
Q 018405 268 QSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 268 ~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
....+++++.+.++|||..+|.-+
T Consensus 121 RR~~~l~e~~r~lrpgg~~lvyvw 144 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNALVYVW 144 (293)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEe
Confidence 566999999999999998777544
No 183
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.98 E-value=2.9e-05 Score=74.34 Aligned_cols=99 Identities=14% Similarity=0.234 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC-----
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES----- 248 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~----- 248 (356)
...+.+.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+.
T Consensus 281 ~~~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~ 357 (431)
T TIGR00479 281 VDRALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP 357 (431)
T ss_pred HHHHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH
Confidence 334444444 5567899999999999999999864 37899996 8888777653 5789999998651
Q ss_pred CC-C-CcEEEecccccCCChHH-HHHHHHHHHHhCCCCCEEEE
Q 018405 249 VP-E-ADTILMKWVLSSFDDEQ-SLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 249 ~~-~-~D~i~~~~vlh~~~~~~-~~~~L~~~~~~L~pgG~lii 288 (356)
.. . .|+|++.- |... ...+++.+.+ ++|++.+++
T Consensus 358 ~~~~~~D~vi~dP-----Pr~G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 358 WAGQIPDVLLLDP-----PRKGCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred hcCCCCCEEEECc-----CCCCCCHHHHHHHHh-cCCCEEEEE
Confidence 11 2 28888632 1111 2455555543 788876666
No 184
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.93 E-value=1.6e-05 Score=77.26 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=68.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC-C-----CCCceEEEccCCC---CCCCC--cEEEeccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP-S-----YLGIEHVGGDFFE---SVPEA--DTILMKWV 260 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-~-----~~~v~~~~~D~~~---~~~~~--D~i~~~~v 260 (356)
....+||||||.|.++..+++.+|+..++++|. ...+..+. + ..++.++.+|+.. .++.+ |-|++.+-
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 356899999999999999999999999999995 44333321 1 2577788777642 34544 66665432
Q ss_pred ccCCChHH-------HHHHHHHHHHhCCCCCEEEEEe
Q 018405 261 LSSFDDEQ-------SLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 261 lh~~~~~~-------~~~~L~~~~~~L~pgG~lii~e 290 (356)
== |+... ...+|+.+.+.|+|||.+.+..
T Consensus 427 DP-WpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DP-WIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CC-CCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 11 21110 3589999999999999998854
No 185
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.93 E-value=2e-05 Score=70.80 Aligned_cols=95 Identities=22% Similarity=0.183 Sum_probs=69.7
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCC-CC-cEEEecccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVP-EA-DTILMKWVL 261 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~~-D~i~~~~vl 261 (356)
-+.+.|||||||+|.++..-+++. -.++.++|...+++.+.+. +.|+++.+.+.+ ..| +- |+|++-+.-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG 137 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG 137 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence 367899999999999999877766 4578899977777666542 458888888887 666 33 999987776
Q ss_pred cCCChH-HHHHHHHHHHHhCCCCCEEE
Q 018405 262 SSFDDE-QSLKLLKNCYKALPDGGKLL 287 (356)
Q Consensus 262 h~~~~~-~~~~~L~~~~~~L~pgG~li 287 (356)
+.+--+ -...+|-.=-+.|+|||.++
T Consensus 138 y~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 138 YFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 654322 24455555557899999765
No 186
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.00033 Score=57.03 Aligned_cols=133 Identities=18% Similarity=0.245 Sum_probs=82.4
Q ss_pred CceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCC----C-CCceEEEccCCCC-CCCC-cEEEecccccCC
Q 018405 194 VKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPS----Y-LGIEHVGGDFFES-VPEA-DTILMKWVLSSF 264 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~D~~~~-~~~~-D~i~~~~vlh~~ 264 (356)
+.-++|||||+|..+..+.+.. |+..+...|+ |..++...+ + -++..+..|+.+. .++. |+++++------
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6889999999999998888754 7888899996 776655332 1 3567888888873 2333 887765332111
Q ss_pred ChHH-------------------HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCH
Q 018405 265 DDEQ-------------------SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTK 325 (356)
Q Consensus 265 ~~~~-------------------~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 325 (356)
+++. ..++|..+-..|.|.|.++++-.. .-.+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~-----------------------------~N~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR-----------------------------ANKP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh-----------------------------hcCH
Confidence 1111 234555555556666665553211 1136
Q ss_pred HHHHHHHHHcCCcceeEEEc---cCceeEEEEe
Q 018405 326 QEYSELAIKAGFKGVNYEYG---ACNLYVMEFL 355 (356)
Q Consensus 326 ~e~~~ll~~aGf~~~~~~~~---~~~~~vi~~~ 355 (356)
+|+..+++.-||.+.....- ....+++.++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 78888899999877654332 2345555444
No 187
>PRK04148 hypothetical protein; Provisional
Probab=97.92 E-value=0.00024 Score=55.69 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=68.5
Q ss_pred HHHHhcCCCCCceEEEEcCCccH-HHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCC----CCcEEEe
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGA-TLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVP----EADTILM 257 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~----~~D~i~~ 257 (356)
+.+.++ ..+..+++|||||+|. .+..|.+ .+..++++|. +..++.++.. .++++..|++++.+ .+|+|.+
T Consensus 8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred HHHhcc-cccCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEEE
Confidence 444454 3345899999999996 7777775 3578999996 7777777543 67999999999543 2499988
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
.+. ..+....+.++.+... .-++|.-...
T Consensus 84 irp-----p~el~~~~~~la~~~~--~~~~i~~l~~ 112 (134)
T PRK04148 84 IRP-----PRDLQPFILELAKKIN--VPLIIKPLSG 112 (134)
T ss_pred eCC-----CHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 654 3456666666776554 5666654443
No 188
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.91 E-value=2.8e-05 Score=71.18 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=50.1
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCC-CcEEEec
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPE-ADTILMK 258 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~-~D~i~~~ 258 (356)
++.+|||+|||+|.++..+++ +..+++++|. +.+++.+++. ++++++.+|+.+ . ... .|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 458999999999999999998 4468999996 8888777543 478999999876 2 112 3998875
No 189
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.91 E-value=0.00014 Score=61.52 Aligned_cols=130 Identities=22% Similarity=0.272 Sum_probs=89.8
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEcc-chHHHHhCCCC--------CCceEEEccCCC---CCCCC--cEEE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYD-LPYVIKNAPSY--------LGIEHVGGDFFE---SVPEA--DTIL 256 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D-~~~~~~~a~~~--------~~v~~~~~D~~~---~~~~~--D~i~ 256 (356)
.++..+|||.+.|-|..++.-+++.. ..++.++ .|.+++.|..+ .+|+++.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 45678999999999999999888543 2566666 48888887654 358999999876 45543 8875
Q ss_pred e-----cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 257 M-----KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 257 ~-----~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
- +..-+ =-...+-+++++.|+|||+++-.-...... + .|.. -+....+.
T Consensus 211 HDPPRfS~Age----LYseefY~El~RiLkrgGrlFHYvG~Pg~r---------y------------rG~d-~~~gVa~R 264 (287)
T COG2521 211 HDPPRFSLAGE----LYSEEFYRELYRILKRGGRLFHYVGNPGKR---------Y------------RGLD-LPKGVAER 264 (287)
T ss_pred eCCCccchhhh----HhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------c------------ccCC-hhHHHHHH
Confidence 3 11111 125688999999999999998754322110 1 1111 25678889
Q ss_pred HHHcCCcceeEEEccC
Q 018405 332 AIKAGFKGVNYEYGAC 347 (356)
Q Consensus 332 l~~aGf~~~~~~~~~~ 347 (356)
|+++||.+++......
T Consensus 265 Lr~vGF~~v~~~~~~~ 280 (287)
T COG2521 265 LRRVGFEVVKKVREAL 280 (287)
T ss_pred HHhcCceeeeeehhcc
Confidence 9999999887665533
No 190
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.91 E-value=1.2e-05 Score=70.65 Aligned_cols=99 Identities=20% Similarity=0.276 Sum_probs=72.9
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCC---CCCC-C-cEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE---SVPE-A-DTI 255 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~-~-D~i 255 (356)
+++.+||-||+|.|..+..+++..+-.+++.+|+ |.+++.+++. +|++++.+|... ..++ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3689999999999999999987665678888886 8888777542 689999999865 3334 4 999
Q ss_pred EecccccCCChHH--HHHHHHHHHHhCCCCCEEEEEe
Q 018405 256 LMKWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 256 ~~~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~e 290 (356)
+.-..--..+... ....++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8733321111111 3689999999999999999855
No 191
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=0.00013 Score=63.77 Aligned_cols=96 Identities=22% Similarity=0.406 Sum_probs=66.6
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEcc--chHHHHhC-CCCCCceEEEccCCC-CCCC--C
Q 018405 179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYD--LPYVIKNA-PSYLGIEHVGGDFFE-SVPE--A 252 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D--~~~~~~~a-~~~~~v~~~~~D~~~-~~~~--~ 252 (356)
..+..+++... ..+...|||||+|.|.++..|+++...+.++-+| +...++.. ...++++++.+|+.+ ++++ .
T Consensus 17 ~v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~ 95 (259)
T COG0030 17 NVIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQ 95 (259)
T ss_pred HHHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcC
Confidence 34567777776 6678899999999999999999998877777777 23333332 335789999999998 7775 3
Q ss_pred cEEEecccccCCChHHHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKN 275 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~ 275 (356)
-..+.+|.=++++.+-..++|+.
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhc
Confidence 23344555566655444444443
No 192
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.83 E-value=3.4e-05 Score=64.44 Aligned_cols=89 Identities=24% Similarity=0.263 Sum_probs=68.0
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH---HHhCCC---CCCceEEEccCCC-CCCCC-cEEEecccccCCCh
Q 018405 196 KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV---IKNAPS---YLGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDD 266 (356)
Q Consensus 196 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~ 266 (356)
+++|||+|.|..+.-++-.+|+.+++.+|. ..- ++.+.. .++++++.+...+ ..+.. |+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence 899999999999999999999999999994 432 222221 2679999888877 33333 999998874
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 267 EQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 267 ~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
....+++-+...++|||+++..-
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEEc
Confidence 26789999999999999998854
No 193
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.82 E-value=2e-05 Score=69.01 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=60.4
Q ss_pred EEEccCCC--CC------CC-CcEEEecccccCCC--hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh
Q 018405 240 HVGGDFFE--SV------PE-ADTILMKWVLSSFD--DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI 308 (356)
Q Consensus 240 ~~~~D~~~--~~------~~-~D~i~~~~vlh~~~--~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~ 308 (356)
++..|+.. |. |+ +|+|++..+|.... .+.-.+.++++.++|||||.|++........ ..
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----------Y~ 207 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----------YM 207 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----------EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----------EE
Confidence 66788876 22 23 49999999998753 4467899999999999999999987754321 01
Q ss_pred hhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405 309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 309 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 344 (356)
.+-..+ ..-..+++.+++.++++||.+.+...
T Consensus 208 vG~~~F----~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 VGGHKF----PCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp ETTEEE----E---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred ECCEec----ccccCCHHHHHHHHHHcCCEEEeccc
Confidence 010000 11234799999999999999988764
No 194
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.81 E-value=1.6e-05 Score=74.62 Aligned_cols=98 Identities=16% Similarity=0.239 Sum_probs=68.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEc---cc-hHHHHhCCCCCCceEEEccC---CCCCCCC--cEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINY---DL-PYVIKNAPSYLGIEHVGGDF---FESVPEA--DTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~v~~~~~D~---~~~~~~~--D~i~~~~vlh~ 263 (356)
....+||||||+|.++..++++. +..+.+ |. +..++.|.++ +|-...+-+ .-|+|.. |+|-|+.++-.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhccccccc
Confidence 45789999999999999999854 332222 32 3344454433 233333322 2277865 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
|...+ ..+|-++.|+|+|||.+++..+-..
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 97654 5688899999999999998665443
No 195
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00012 Score=60.12 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=75.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCCcEEEecccccCCCh
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEADTILMKWVLSSFDD 266 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~ 266 (356)
...+|+|+|||||.+++..+-..|. +++++|. |+.++.++++ .++++++.|+.+-....|.++++--+--+-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~r 123 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPFGSQRR 123 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCCccccc
Confidence 4578999999999999987765554 6788885 8888877664 4799999998874444477776544333211
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeE
Q 018405 267 EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNY 342 (356)
Q Consensus 267 ~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 342 (356)
-.-..+|.++.+.-+ . .+++ ++.-+.+-+.+..+++|+++...
T Consensus 124 haDr~Fl~~Ale~s~---v----------------------VYsi--------H~a~~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 124 HADRPFLLKALEISD---V----------------------VYSI--------HKAGSRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred cCCHHHHHHHHHhhh---e----------------------EEEe--------eccccHHHHHHHHHhcCCeEEEE
Confidence 111344444444321 0 1111 11126788888999999888765
No 196
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00013 Score=63.19 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=64.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccC----CCCC--CCC--cEEE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDF----FESV--PEA--DTIL 256 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~----~~~~--~~~--D~i~ 256 (356)
....|||+|||+|..+..++...|..+++++|. +..+..|.++ +++.++..++ +.+. +.+ |+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 445899999999999999999999999999996 6666655443 6777774444 3332 233 7777
Q ss_pred ecc--cccCC----------------------ChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 257 MKW--VLSSF----------------------DDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 257 ~~~--vlh~~----------------------~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
++- +.+.= ..+....++.-+.+.|+|||.+.+
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 642 11100 001234556667788888887766
No 197
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00067 Score=57.07 Aligned_cols=112 Identities=17% Similarity=0.150 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccchHHHHhCCCCCCceEEEccCCCC-------
Q 018405 177 TCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDLPYVIKNAPSYLGIEHVGGDFFES------- 248 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~------- 248 (356)
+.....++.+.+.-+++..+|+|+|+-.|.++..+++... +.+++++|+.++-. .++|.++++|+..+
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~ 104 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLL 104 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHH
Confidence 3344556667665477889999999999999998888664 45689999643322 25699999999873
Q ss_pred --CCC--CcEEEe---cccccCCCh------HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 249 --VPE--ADTILM---KWVLSSFDD------EQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 249 --~~~--~D~i~~---~~vlh~~~~------~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
.+. .|+|++ .++--++.- +-+..++.-+...|+|||.+++-..-
T Consensus 105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 222 288874 222222221 22567788888999999999985543
No 198
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.65 E-value=0.00013 Score=63.12 Aligned_cols=76 Identities=17% Similarity=0.370 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 250 (356)
++..|++.-+ .++...|||||.|||.++..+++... +++.++. |.++....++ ...++..||++. +.|
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 4567777666 88899999999999999999999654 5666654 6655544332 468999999999 778
Q ss_pred CCcEEEec
Q 018405 251 EADTILMK 258 (356)
Q Consensus 251 ~~D~i~~~ 258 (356)
..|.++.+
T Consensus 123 ~fd~cVsN 130 (315)
T KOG0820|consen 123 RFDGCVSN 130 (315)
T ss_pred ccceeecc
Confidence 77877763
No 199
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.64 E-value=0.0016 Score=59.01 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCC--CC-cEEEecccccCCChH
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP--EA-DTILMKWVLSSFDDE 267 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~--~~-D~i~~~~vlh~~~~~ 267 (356)
+.+..++|||||++|.++..++++ +.+++++|...+.......++|.+..+|.+...| .. |.++|--+ +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv------e 280 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV------E 280 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc------c
Confidence 357789999999999999999996 5589999976666666667899999999887333 33 99988655 3
Q ss_pred HHHHHHHHHHHhCCCC-CEEEEEecccCC
Q 018405 268 QSLKLLKNCYKALPDG-GKLLNVNVTIPE 295 (356)
Q Consensus 268 ~~~~~L~~~~~~L~pg-G~lii~e~~~~~ 295 (356)
....+++-+.++|..| .+-.|...-.+.
T Consensus 281 ~P~rva~lm~~Wl~~g~cr~aIfnLKlpm 309 (357)
T PRK11760 281 KPARVAELMAQWLVNGWCREAIFNLKLPM 309 (357)
T ss_pred CHHHHHHHHHHHHhcCcccEEEEEEEcCC
Confidence 3567778888888776 445555554443
No 200
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.00019 Score=61.11 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=85.6
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH---HHhCCC---CCCceEEEccCCC-C-CCC-CcEEEecccccC
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV---IKNAPS---YLGIEHVGGDFFE-S-VPE-ADTILMKWVLSS 263 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~---~~~v~~~~~D~~~-~-~~~-~D~i~~~~vlh~ 263 (356)
..+++|||.|.|-.+.-++-.+|+.+++.+|. ..- ++.+.. .++++++.+...+ . .+. .|+|++..+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 68999999999999999998999999999994 332 333322 2679999888877 2 234 6999998773
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
....++.-+...+++||.++..-... ++. -..+.+.....-|+.+..+.
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~~k~~~--------------------------~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLAYKGLA--------------------------GKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchhhhHHh--------------------------hhh-hHHHHHHHHHhhcCcEEEEE
Confidence 36778888889999998766521110 100 13456667777788888877
Q ss_pred Ecc
Q 018405 344 YGA 346 (356)
Q Consensus 344 ~~~ 346 (356)
...
T Consensus 195 ~~~ 197 (215)
T COG0357 195 SLT 197 (215)
T ss_pred Eee
Confidence 654
No 201
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.61 E-value=0.00018 Score=67.46 Aligned_cols=89 Identities=11% Similarity=0.013 Sum_probs=60.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--C-CCCcEEEecccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--V-PEADTILMKWVL 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~-~~~D~i~~~~vl 261 (356)
+..+|||+|||+|.++..++.. ..+++++|. +..++.++.+ ++++++.+|+.+ . . ...|+|++.--=
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 4579999999999999999864 467999995 7777766543 478999999865 2 1 123988874221
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
-.. ..++++.+. .++|++.+++
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyv 332 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYS 332 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEE
Confidence 111 234445554 3688877776
No 202
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0013 Score=58.24 Aligned_cols=135 Identities=16% Similarity=0.291 Sum_probs=88.9
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc------hHHHHhCC----------------------------------
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL------PYVIKNAP---------------------------------- 233 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~------~~~~~~a~---------------------------------- 233 (356)
..+||-=|||.|.++..|+...+.+++--+.. .-+++..+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 46899999999999999998877666521110 00110000
Q ss_pred --C---CCCceEEEccCCC--CCCC---C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchh
Q 018405 234 --S---YLGIEHVGGDFFE--SVPE---A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSAT 302 (356)
Q Consensus 234 --~---~~~v~~~~~D~~~--~~~~---~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~ 302 (356)
. .+..+.-.|||.+ ..+. . |+|+.++.+.-- ......|..+++.|+|||.++-+.+.........
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~-- 306 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTH-- 306 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEeccceeeeccCCC--
Confidence 0 0223445688887 3333 2 999887766543 4588999999999999999998887664321110
Q ss_pred hhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 303 SREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
+. ....+-+.+.+++..+.+.-||++++-.
T Consensus 307 -------g~----~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 307 -------GV----ENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred -------CC----cccccccccHHHHHHHHHhcCcEEEEee
Confidence 00 0012445789999999999999988654
No 203
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.58 E-value=0.00036 Score=59.40 Aligned_cols=113 Identities=22% Similarity=0.268 Sum_probs=79.7
Q ss_pred EEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC--C-CcEEEecccccCCC
Q 018405 197 LVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP--E-ADTILMKWVLSSFD 265 (356)
Q Consensus 197 vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~--~-~D~i~~~~vlh~~~ 265 (356)
|.||||.+|.+...|+++..--+++..|. +.-++.|+.. ++|++..+|-++..+ + .|+|+++.+--
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H---
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH---
Confidence 68999999999999999888778999996 7766666542 689999999887443 3 48888887754
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405 266 DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 266 ~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 344 (356)
.-..++|.+....+++..++++. |+ .....++++|.+.||.+++=..
T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILq----------------------------P~---~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQ----------------------------PN---THAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp -HHHHHHHHHTGGGGTT--EEEEE----------------------------ES---S-HHHHHHHHHHTTEEEEEEEE
T ss_pred -HHHHHHHHhhHHHhccCCeEEEe----------------------------CC---CChHHHHHHHHHCCCEEEEeEE
Confidence 55788888887776655555551 11 1357889999999999886433
No 204
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=7.9e-05 Score=66.58 Aligned_cols=112 Identities=22% Similarity=0.337 Sum_probs=70.4
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCe-EEEccc-hHHHHhC---CCC---CCceEEEccCCC---CCCC
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIK-GINYDL-PYVIKNA---PSY---LGIEHVGGDFFE---SVPE 251 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a---~~~---~~v~~~~~D~~~---~~~~ 251 (356)
.+-...+++ .+.+|||||.|.|.-+-++-.-+|+++ ++.++. |..-+.. ... ........|+.. ++|.
T Consensus 104 ~L~~~~~df-apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 104 ELQKRVPDF-APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHhCCCc-CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 333344434 346799999999999888888889986 555554 3322111 111 111222233322 4566
Q ss_pred CcEEEecccccCCChHH----HHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 252 ADTILMKWVLSSFDDEQ----SLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~~~----~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
+|.|.+.-++|.+-.+. ....++++...+.|||.|+|+|...+.
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 67777776666543222 334899999999999999999976554
No 205
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.55 E-value=0.00058 Score=57.55 Aligned_cols=94 Identities=15% Similarity=0.049 Sum_probs=59.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--C-C--C-CC-cEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--S-V--P-EA-DTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~--~-~~-D~i~~ 257 (356)
...+|||++||+|.++.+++.+... +++.+|. +..++.++++ ++++++.+|.++ . . . .. |+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4579999999999999999998653 6888885 6666555432 468899999855 1 1 1 22 66666
Q ss_pred cccccCCChHHHHHHHHHHH--HhCCCCCEEEEEec
Q 018405 258 KWVLSSFDDEQSLKLLKNCY--KALPDGGKLLNVNV 291 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~--~~L~pgG~lii~e~ 291 (356)
---... .....++..+. .+|+++|.+++ |.
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~-E~ 159 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIVV-EE 159 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEE-Ee
Confidence 333221 11334444443 35777775554 54
No 206
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.55 E-value=0.00018 Score=64.55 Aligned_cols=66 Identities=21% Similarity=0.222 Sum_probs=54.6
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC----CCceEEEccCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE 247 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~ 247 (356)
...+++.+. ..+...+||++||.|.++..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 456777776 56778999999999999999999986 789999996 8888877643 478888888875
No 207
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.52 E-value=0.00014 Score=60.93 Aligned_cols=106 Identities=19% Similarity=0.279 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCC--CCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEccCCCC---------
Q 018405 181 MEKVLESYKGFE--HVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGGDFFES--------- 248 (356)
Q Consensus 181 ~~~~~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~--------- 248 (356)
..++.+.++-++ +..++||+||++|.++..++++. +..+++++|+... ....++.++.+|+.++
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~----~~~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM----DPLQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST----GS-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc----ccccceeeeecccchhhHHHhhhhh
Confidence 445666665233 45899999999999999999987 6788999996433 1113455555555431
Q ss_pred CC---CC-cEEEeccc---ccC------CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 249 VP---EA-DTILMKWV---LSS------FDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 249 ~~---~~-D~i~~~~v---lh~------~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
.+ .. |+|++-.. -.+ ..-+-+...|.-+.+.|+|||.+++--
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 11 23 88877441 111 011224455666667799999888733
No 208
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.49 E-value=5.4e-05 Score=62.68 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=80.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC-CCC--CcEEEecccccCCChHH
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES-VPE--ADTILMKWVLSSFDDEQ 268 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-~~~--~D~i~~~~vlh~~~~~~ 268 (356)
.+.++||+|+|.|..+..++..+.+ +...++ ..|..+.++. +..+ ....+. +.+ -|+|.|.++|.-.- +
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk-~ynV--l~~~ew~~t~~k~dli~clNlLDRc~--~ 184 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK-NYNV--LTEIEWLQTDVKLDLILCLNLLDRCF--D 184 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc-CCce--eeehhhhhcCceeehHHHHHHHHhhc--C
Confidence 4689999999999999998876654 222333 3444444322 1221 111221 112 29999999997653 4
Q ss_pred HHHHHHHHHHhCCC-CCEEEEEecc-----cCCCCCCchhhhhhhhhhhhhhhhcCCCccC--CHHHHHHHHHHcCCcce
Q 018405 269 SLKLLKNCYKALPD-GGKLLNVNVT-----IPEVPENSATSREISILDTICLFQVPHGRER--TKQEYSELAIKAGFKGV 340 (356)
Q Consensus 269 ~~~~L~~~~~~L~p-gG~lii~e~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~~ 340 (356)
.-++|+.++.+|+| +|++++.=.. .+.+....+. .-| ..+ .. +|+.+ ....+.++|+.+||.+.
T Consensus 185 p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~-----rPd-n~L-e~-~Gr~~ee~v~~~~e~lr~~g~~ve 256 (288)
T KOG3987|consen 185 PFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPL-----RPD-NLL-EN-NGRSFEEEVARFMELLRNCGYRVE 256 (288)
T ss_pred hHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcC-----Cch-HHH-Hh-cCccHHHHHHHHHHHHHhcCchhh
Confidence 78999999999999 7888773211 1111100000 000 011 11 34332 22346789999999988
Q ss_pred eEEEcc
Q 018405 341 NYEYGA 346 (356)
Q Consensus 341 ~~~~~~ 346 (356)
..+..+
T Consensus 257 awTrlP 262 (288)
T KOG3987|consen 257 AWTRLP 262 (288)
T ss_pred hhhcCC
Confidence 766553
No 209
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.47 E-value=0.0012 Score=54.28 Aligned_cols=138 Identities=21% Similarity=0.188 Sum_probs=84.0
Q ss_pred CCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhC-----------CC--CCCceEEEccCCC-CCCCC-c
Q 018405 190 GFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNA-----------PS--YLGIEHVGGDFFE-SVPEA-D 253 (356)
Q Consensus 190 ~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a-----------~~--~~~v~~~~~D~~~-~~~~~-D 253 (356)
++++...|+|+=.|.|.++.-++... |.-.+..+--.+....+ ++ ..+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 47889999999999999999888754 33333333211111111 11 1345555555444 33343 6
Q ss_pred EEEecccccCC-----ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405 254 TILMKWVLSSF-----DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY 328 (356)
Q Consensus 254 ~i~~~~vlh~~-----~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 328 (356)
+++....-|++ ......++.+.++++|||||.++|.|.......... +-. . -+ .....-.
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------dt~----~-~~-ri~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------DTI----T-LH-RIDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------hhh----h-hc-ccChHHH
Confidence 66553333322 234578999999999999999999998765532211 100 0 11 1356778
Q ss_pred HHHHHHcCCcceeE
Q 018405 329 SELAIKAGFKGVNY 342 (356)
Q Consensus 329 ~~ll~~aGf~~~~~ 342 (356)
.+..+++||+...-
T Consensus 190 ~a~veaaGFkl~ae 203 (238)
T COG4798 190 IAEVEAAGFKLEAE 203 (238)
T ss_pred HHHHHhhcceeeee
Confidence 88889999987643
No 210
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.35 E-value=0.0012 Score=52.78 Aligned_cols=92 Identities=15% Similarity=0.269 Sum_probs=61.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHh----CCCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCC-CCCCC-cE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISK----YPRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFE-SVPEA-DT 254 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~-~~~~~-D~ 254 (356)
..+..+|+|+|||.|.++..++.. .++++++++|. +...+.+..+ .++++..++... ..... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 357789999999999999999982 28899999995 6665555432 345666665554 22333 78
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
++.-|..-+++ ..+|+...+ |+-..++.
T Consensus 103 ~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 103 LVGLHACGDLS----DRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEEeecccchH----HHHHHHHHH---cCCCEEEE
Confidence 88877766654 355555444 55555543
No 211
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=97.30 E-value=0.0045 Score=54.92 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=95.4
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC---------CCCceEEEccCCCCC----------CCC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS---------YLGIEHVGGDFFESV----------PEA 252 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~----------~~~ 252 (356)
.+...|+.+|||-=....++.. .+++++.-+|+|++++.-++ .++..++..|+...+ +..
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 3456899999998888777743 23688999999987653321 257888999987321 112
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhh-hhhhhhhhh-hhhcCCCccCCHHHHH
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR-EISILDTIC-LFQVPHGRERTKQEYS 329 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~t~~e~~ 329 (356)
-++++-.++.+++.++..++|+.+.+...||+.+++ |.+.+-.. ..... ......... ....+-....+++++.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDG--EWRAGMRAPVYHAARGVDGSGLVFGIDRADVA 235 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-Eeccccch--hHHHHHHHHHHHhhhcccccccccCCChhhHH
Confidence 688889999999999999999999999888877765 55443111 00000 000000000 0000001124689999
Q ss_pred HHHHHcCCcceeE
Q 018405 330 ELAIKAGFKGVNY 342 (356)
Q Consensus 330 ~ll~~aGf~~~~~ 342 (356)
++|++.||+....
T Consensus 236 ~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 236 EWLAERGWRASEH 248 (260)
T ss_pred HHHHHCCCeeecC
Confidence 9999999998765
No 212
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.29 E-value=0.0004 Score=56.78 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=73.4
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCCcEEEecccccCCCh
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEADTILMKWVLSSFDD 266 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~D~i~~~~vlh~~~~ 266 (356)
..+.|+|.|+|.++.-.++. --+++.++. |...+.+.++ .+++++.+|..+ .+..+|+|+|-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 67999999999998866655 235777774 7776666654 679999999999 7866799988544333445
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 267 EQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 267 ~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
+..+.+++.+.+-|+-++.++=.+...
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~~ 138 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVRI 138 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHhh
Confidence 667899999999999999887655443
No 213
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.0004 Score=54.92 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=54.7
Q ss_pred EEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHHHHHHH
Q 018405 197 LVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQSLKLL 273 (356)
Q Consensus 197 vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L 273 (356)
.+-||||.=. -+|++..+-... ++.+.+++--.++ .+.+. |+|.+.+++.|+.-++-...+
T Consensus 6 kv~ig~G~~r-------~npgWi~~d~ed---------~~~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~al 69 (185)
T COG4627 6 KVKIGAGGKR-------VNPGWIITDVED---------RPEVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSAL 69 (185)
T ss_pred EEEEeccccc-------cCCCceeeehhc---------ccccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHH
Confidence 5667887533 236655544321 1234444433333 45443 999999999999988999999
Q ss_pred HHHHHhCCCCCEEEEEec
Q 018405 274 KNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 274 ~~~~~~L~pgG~lii~e~ 291 (356)
+.|++.|||||+|-+.-+
T Consensus 70 kechr~Lrp~G~LriAvP 87 (185)
T COG4627 70 KECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHhCcCcEEEEEcC
Confidence 999999999999988543
No 214
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.28 E-value=0.00036 Score=57.75 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=62.6
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC-------C------CCCceEEEccCCCCCCC----C---
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP-------S------YLGIEHVGGDFFESVPE----A--- 252 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~------~~~v~~~~~D~~~~~~~----~--- 252 (356)
.--+.|||||-|.++..|+..||+.-+.|.++ -.+.+..+ . ..++.+...+.+.-.|. +
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35699999999999999999999999988885 44433221 1 14455555554442221 1
Q ss_pred cEEEecccccCCChHH-----HHHHHHHHHHhCCCCCEEEEEecc
Q 018405 253 DTILMKWVLSSFDDEQ-----SLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
-..++.--=|.+.... ...++.+..-+|++||.++.+.-+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 2222222223321111 346788888899999999987644
No 215
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0037 Score=52.40 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=76.7
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-----CCceEEEc---cCCCCCCCC--cEEEecccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-----LGIEHVGG---DFFESVPEA--DTILMKWVL 261 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-----~~v~~~~~---D~~~~~~~~--D~i~~~~vl 261 (356)
.+.+|||.||-|-|.....+.++-|..+.++---|.+.+..+.. .+|....| |.....|+. |-|+.--.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 57899999999999999999888888777665568888776543 56777666 333345543 877764443
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
.+. ++...+.+.+.++|||+|.+-.+....-+
T Consensus 180 e~y--Edl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 180 ELY--EDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hHH--HHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 434 77999999999999999999887765543
No 216
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.24 E-value=0.00088 Score=62.75 Aligned_cols=90 Identities=12% Similarity=0.021 Sum_probs=67.6
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC---CCCCcEEEecccccC
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES---VPEADTILMKWVLSS 263 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~~~D~i~~~~vlh~ 263 (356)
..+|||++||+|..+..++...+..+++++|. +..++.++++ +++++..+|.... ....|+|++--.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP~--- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDPF--- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECCC---
Confidence 46899999999999999998877567999996 7777766543 3466888887652 123499988431
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
. ....+|..+.+.++|||.+++.
T Consensus 135 -G--s~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 -G--SPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred -C--CcHHHHHHHHHHhcCCCEEEEE
Confidence 1 1357788877888999999997
No 217
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.22 E-value=0.00042 Score=64.00 Aligned_cols=101 Identities=21% Similarity=0.249 Sum_probs=78.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC--cEEEecccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA--DTILMKWVL 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~--D~i~~~~vl 261 (356)
+...++|+|||.|.....+.. +.....++++. +..+.++... ..-.++.+|+.. ++++. |.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 455899999999999987654 55667788885 4433333221 344558889988 77765 999999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV 296 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~ 296 (356)
.|.++ ..+++++++++++|||.++..|.+....
T Consensus 189 ~~~~~--~~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 189 CHAPD--LEKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ccCCc--HHHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 99966 7999999999999999999999876543
No 218
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.20 E-value=0.0019 Score=57.55 Aligned_cols=98 Identities=15% Similarity=0.297 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC----CCCCCceEEEccCCC-CCCC
Q 018405 178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA----PSYLGIEHVGGDFFE-SVPE 251 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~-~~~~ 251 (356)
...+..+++.+. ..+...|||||+|.|.++..|++.. .++++++. +..++.. ...++++++.+|+.+ +.+.
T Consensus 16 ~~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 16 PNIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence 344567788776 7788999999999999999999988 45555553 4443333 235789999999998 5544
Q ss_pred ----CcEEEecccccCCChHHHHHHHHHHHHhCCC
Q 018405 252 ----ADTILMKWVLSSFDDEQSLKLLKNCYKALPD 282 (356)
Q Consensus 252 ----~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~p 282 (356)
..+.+..+.=++. ...++.++...-+.
T Consensus 93 ~~~~~~~~vv~NlPy~i----s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPYNI----SSPILRKLLELYRF 123 (262)
T ss_dssp HCSSSEEEEEEEETGTG----HHHHHHHHHHHGGG
T ss_pred hhcCCceEEEEEecccc----hHHHHHHHhhcccc
Confidence 3344444444444 35666666664444
No 219
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.15 E-value=0.012 Score=49.78 Aligned_cols=116 Identities=15% Similarity=0.133 Sum_probs=83.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------CCCceEEEccCCCCC-CC-C-cEEEecccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFESV-PE-A-DTILMKWVL 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~~~-~~-~-D~i~~~~vl 261 (356)
...++.||||-+|.+.+.+++.++...++..|. +.-.+.|.+ .++++...+|.+.+. ++ . |+|+.+.+-
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMG 95 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMG 95 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCc
Confidence 445699999999999999999999999999995 555544432 268888999988743 33 2 999887765
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN 341 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 341 (356)
- .-...+|.+-.+-|+.=-++++. |+. ...+++++|.+.+|.+..
T Consensus 96 G----~lI~~ILee~~~~l~~~~rlILQ----------------------------Pn~---~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 96 G----TLIREILEEGKEKLKGVERLILQ----------------------------PNI---HTYELREWLSANSYEIKA 140 (226)
T ss_pred H----HHHHHHHHHhhhhhcCcceEEEC----------------------------CCC---CHHHHHHHHHhCCceeee
Confidence 4 44778888877777633344441 122 256778888888888765
Q ss_pred EE
Q 018405 342 YE 343 (356)
Q Consensus 342 ~~ 343 (356)
=.
T Consensus 141 E~ 142 (226)
T COG2384 141 ET 142 (226)
T ss_pred ee
Confidence 33
No 220
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.12 E-value=0.0022 Score=57.98 Aligned_cols=94 Identities=21% Similarity=0.378 Sum_probs=70.7
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC-------------CCceEEEccCCCC-CC--CC-
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY-------------LGIEHVGGDFFES-VP--EA- 252 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~~-~~--~~- 252 (356)
++..++|-+|||.|-.++++++ +|+. +++.+|+ |.+++.++.. +|++++..|.++. .. +.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4668999999999999999886 6854 6888886 9999988732 7899999998873 22 22
Q ss_pred cEEEecccccCCChHH--------HHHHHHHHHHhCCCCCEEEEEec
Q 018405 253 DTILMKWVLSSFDDEQ--------SLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~--------~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
|+|+. +++|++ ...+-.-+++.|+++|.+++.-.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 77765 333332 34667778899999999998543
No 221
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.10 E-value=0.0045 Score=59.48 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=69.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC------CCceEEEccCCC---CCCCC-cEEE--
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE---SVPEA-DTIL-- 256 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~~~-D~i~-- 256 (356)
..++.+|||+++|.|.=+..++....+ -.++..|. +.-++..+++ .++.+...|... ..+.. |.|+
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 467789999999999999999998754 46788885 5444433321 456777777654 23333 8887
Q ss_pred --ecc--cc-------cCCChHHH-------HHHHHHHHHhCCCCCEEEEEecc
Q 018405 257 --MKW--VL-------SSFDDEQS-------LKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 257 --~~~--vl-------h~~~~~~~-------~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
|+. ++ ..|+.++. .++|.++.+.|+|||+|+-....
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 332 22 23333332 68999999999999998665443
No 222
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.06 E-value=0.0053 Score=49.40 Aligned_cols=95 Identities=20% Similarity=0.329 Sum_probs=63.6
Q ss_pred EEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC---CC---ceEEEccCCC---CCCC--C-cEEEeccccc
Q 018405 197 LVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY---LG---IEHVGGDFFE---SVPE--A-DTILMKWVLS 262 (356)
Q Consensus 197 vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~---~~---v~~~~~D~~~---~~~~--~-D~i~~~~vlh 262 (356)
++|+|||+|... .+....+. ..++++|. +.++..+... .. +.+..+|... ++.. . |++ +....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 33333333 46777885 5555543221 11 5777777654 4443 3 999 555554
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
++.+ ....++++.+.++|+|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4433 689999999999999999998776543
No 223
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=97.02 E-value=0.00036 Score=45.36 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=37.6
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+.|++.|.+.+ ++.|+.|||+++|++ .. -+.|+|..|+..|++.+
T Consensus 6 l~iL~~l~~~~--~~~t~~eia~~~gl~------~s-tv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAESG--GPLTLSEIARALGLP------KS-TVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCTB--SCEEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCcCeec
Confidence 45677887764 578999999999997 66 89999999999999994
No 224
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=96.89 E-value=0.0021 Score=44.27 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=46.9
Q ss_pred HHhcCchhHHHhCCCCC-CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 33 VVELDVFEIISKAGAGA-KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 33 a~~lglf~~L~~~~~~~-~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
..+-.|++.|.+.| + +.|+.|||+++|++ .. .++|.|..|...|+|..+.. .++.|+++.
T Consensus 6 ~~~~~IL~~L~~~g--~~~~ta~eLa~~lgl~------~~-~v~r~L~~L~~~G~V~~~~~-~~~~W~i~~ 66 (68)
T smart00550 6 SLEEKILEFLENSG--DETSTALQLAKNLGLP------KK-EVNRVLYSLEKKGKVCKQGG-TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHHCC--CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCC-CCCceEeec
Confidence 34556788888863 2 29999999999997 67 89999999999999996432 237787754
No 225
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=96.89 E-value=0.00055 Score=57.95 Aligned_cols=90 Identities=26% Similarity=0.327 Sum_probs=62.3
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEeccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKWV 260 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~v 260 (356)
..+...|+|.-||.|.++..+++..+...++.+|+ |..++..++. +++....+|..+-.+. +|-|++...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 34778999999999999999999777788999996 7766554432 6688999998873223 288877543
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEE
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKL 286 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~l 286 (356)
+....+|..+.+.+++||.+
T Consensus 179 ------~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 179 ------ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp ------SSGGGGHHHHHHHEEEEEEE
T ss_pred ------HHHHHHHHHHHHHhcCCcEE
Confidence 22457888888999988865
No 226
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=96.86 E-value=0.0022 Score=53.54 Aligned_cols=101 Identities=18% Similarity=0.174 Sum_probs=64.8
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCe---------EEEccc-hHHHHhCCCC-------CCceEEEc
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIK---------GINYDL-PYVIKNAPSY-------LGIEHVGG 243 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~~-------~~v~~~~~ 243 (356)
+..++.... +++...|+|-=||+|.+.++-+...++.. +++.|. +.+++.++.+ ..+.+...
T Consensus 17 A~~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~ 95 (179)
T PF01170_consen 17 AAALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQW 95 (179)
T ss_dssp HHHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE-
T ss_pred HHHHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEec
Confidence 344555444 77888999999999999998877666666 889995 7777766543 45789999
Q ss_pred cCCC-CCCC-C-cEEEecccccC-CCh-HH----HHHHHHHHHHhCCC
Q 018405 244 DFFE-SVPE-A-DTILMKWVLSS-FDD-EQ----SLKLLKNCYKALPD 282 (356)
Q Consensus 244 D~~~-~~~~-~-D~i~~~~vlh~-~~~-~~----~~~~L~~~~~~L~p 282 (356)
|+.+ +.+. . |+|++.--.-. ... .+ -.++++.+.+.++|
T Consensus 96 D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~ 143 (179)
T PF01170_consen 96 DARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP 143 (179)
T ss_dssp -GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred chhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence 9998 6443 3 99988543332 121 11 24667888888988
No 227
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.82 E-value=0.00068 Score=54.08 Aligned_cols=97 Identities=21% Similarity=0.180 Sum_probs=66.2
Q ss_pred CCceEEEEcCC-ccHHHHHHHHhCCCCeEEEcc-chHHHHhCCCC---------CCceEEEccCCCC---CCC--CcEEE
Q 018405 193 HVKKLVDVGGG-LGATLNMIISKYPRIKGINYD-LPYVIKNAPSY---------LGIEHVGGDFFES---VPE--ADTIL 256 (356)
Q Consensus 193 ~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D-~~~~~~~a~~~---------~~v~~~~~D~~~~---~~~--~D~i~ 256 (356)
...+||++|+| +|..+..++...|...+...| ....++..++. .++.....+.... ..+ .|+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 34789999999 566666677777888888888 45555443321 2343444343331 122 29999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
++..+.. ++....+.+.+...|+|.|+-++..+
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhCcccceeEecC
Confidence 9998864 36678899999999999998666444
No 228
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.029 Score=48.09 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc--hHHHHhCCCCCCceEEEc-cCCC----CCCCC-
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL--PYVIKNAPSYLGIEHVGG-DFFE----SVPEA- 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~v~~~~~-D~~~----~~~~~- 252 (356)
....++.+.-..++..+||||+.||.++.-++++-. .++.++|. .+.....+..+||...+. |+.. .+.+.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 345555565234678999999999999999988633 25666773 444445555577665543 4443 12222
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE-EecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN-VNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
|++++--.+- ....+|-.+...++|++.++. +-+-....+.. ...-....+ +.....-..++.++
T Consensus 146 d~~v~DvSFI-----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~--v~kkGvv~d-------~~~~~~v~~~i~~~ 211 (245)
T COG1189 146 DLIVIDVSFI-----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ--VGKKGVVRD-------PKLHAEVLSKIENF 211 (245)
T ss_pred CeEEEEeehh-----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhh--cCcCceecC-------cchHHHHHHHHHHH
Confidence 8888754432 258999999999999986655 33322221100 000000111 11222346788899
Q ss_pred HHHcCCcceeEEEcc
Q 018405 332 AIKAGFKGVNYEYGA 346 (356)
Q Consensus 332 l~~aGf~~~~~~~~~ 346 (356)
+++.||++..+.+.+
T Consensus 212 ~~~~g~~~~gl~~Sp 226 (245)
T COG1189 212 AKELGFQVKGLIKSP 226 (245)
T ss_pred HhhcCcEEeeeEccC
Confidence 999999999988765
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.75 E-value=0.0059 Score=51.88 Aligned_cols=140 Identities=16% Similarity=0.084 Sum_probs=88.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-h----HHHHhCCCCCCceEEEccCCCCCC-----CC-cEEEec
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-P----YVIKNAPSYLGIEHVGGDFFESVP-----EA-DTILMK 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~~-----~~-D~i~~~ 258 (356)
+++..+||-+|..+|....+++.-.. +-.+.+++. | +.+..|++++||--+..|...|.. +. |+|++-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 77889999999999999999998554 666767764 4 457777888999999999987521 23 887763
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
-. + + ++..-+..++...||+||.+++.=-.. ..|. + ....-.-.+-.+-|++.||+
T Consensus 151 Va-Q--p-~Qa~I~~~Na~~fLk~gG~~~i~iKa~--------------siD~-----t-~~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 VA-Q--P-DQARIAALNARHFLKPGGHLIISIKAR--------------SIDS-----T-ADPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp -S-S--T-THHHHHHHHHHHHEEEEEEEEEEEEHH--------------HH-S-----S-SSHHHHHHHHHHHHHCTTCE
T ss_pred CC-C--h-HHHHHHHHHHHhhccCCcEEEEEEecC--------------cccC-----c-CCHHHHHHHHHHHHHHcCCC
Confidence 22 2 2 457888889999999999988842110 1110 0 00000112234566888999
Q ss_pred ceeEEEccC---ceeEEEE
Q 018405 339 GVNYEYGAC---NLYVMEF 354 (356)
Q Consensus 339 ~~~~~~~~~---~~~vi~~ 354 (356)
+.+.+.+.+ .+.++.+
T Consensus 207 ~~e~i~LePy~~dH~~vv~ 225 (229)
T PF01269_consen 207 PLEQITLEPYERDHAMVVG 225 (229)
T ss_dssp EEEEEE-TTTSTTEEEEEE
T ss_pred hheEeccCCCCCCcEEEEE
Confidence 998877643 3444443
No 230
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.74 E-value=0.0093 Score=50.35 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCceEEEEcCCccHHHHHHH---HhC-CCCeEEEccc--hHHHHhCCCC----CCceEEEccCCCC----C------CCC
Q 018405 193 HVKKLVDVGGGLGATLNMII---SKY-PRIKGINYDL--PYVIKNAPSY----LGIEHVGGDFFES----V------PEA 252 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~---~~~-p~~~~~~~D~--~~~~~~a~~~----~~v~~~~~D~~~~----~------~~~ 252 (356)
++..|+|+|.-.|+.+..++ +.+ ++.+++++|+ ...-..+.+. +||++++||..++ . +..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 47899999998887776554 444 7788999985 3333333333 7999999998763 1 111
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
-++++-..-|.+ +.+.+.|+.....++||++++|-|...
T Consensus 112 ~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~ 150 (206)
T PF04989_consen 112 PVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTII 150 (206)
T ss_dssp SEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred ceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccc
Confidence 345555555555 448999999999999999999977654
No 231
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=96.74 E-value=0.0028 Score=46.36 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=46.1
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
+.|++.|...+ ++.|+.|||+.+|++ .. -+.|.|+.|+..|++..+. .++.|++++..
T Consensus 8 ~~Il~~l~~~~--~~~t~~~ia~~l~i~------~~-tv~r~l~~L~~~g~l~~~~--~~~~y~l~~~~ 65 (91)
T smart00346 8 LAVLRALAEEP--GGLTLAELAERLGLS------KS-TAHRLLNTLQELGYVEQDG--QNGRYRLGPKV 65 (91)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCeeecC--CCCceeecHHH
Confidence 45677777642 489999999999997 66 8999999999999999532 24788887643
No 232
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.73 E-value=0.089 Score=49.08 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=64.3
Q ss_pred CCceEEEEcCCccHHHHHHH--------Hh-------CCCCeEEEccchH-----HHHhC---CC------------CCC
Q 018405 193 HVKKLVDVGGGLGATLNMII--------SK-------YPRIKGINYDLPY-----VIKNA---PS------------YLG 237 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~--------~~-------~p~~~~~~~D~~~-----~~~~a---~~------------~~~ 237 (356)
+..+|+|+|||+|..+..+. ++ .|+..+..-|+|. ..... ++ ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 46799999999997664432 22 2567787778763 11111 00 011
Q ss_pred ---ceEEEccCCC-CCCCC--cEEEecccccCCCh--H----------------------------------HHHHHHHH
Q 018405 238 ---IEHVGGDFFE-SVPEA--DTILMKWVLSSFDD--E----------------------------------QSLKLLKN 275 (356)
Q Consensus 238 ---v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~--~----------------------------------~~~~~L~~ 275 (356)
+.-+.|.|.. -+|.. ++++++..||.++. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2234577777 67876 99999999997652 0 12234444
Q ss_pred HHHhCCCCCEEEEEecccC
Q 018405 276 CYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 276 ~~~~L~pgG~lii~e~~~~ 294 (356)
=.+=|.|||++++.-...+
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHHhccCcEEEEEEecCC
Confidence 5567899999999766554
No 233
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.71 E-value=0.013 Score=49.82 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=72.5
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhC-------CCCCCceEEEccCCCCC--------CCC-
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNA-------PSYLGIEHVGGDFFESV--------PEA- 252 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a-------~~~~~v~~~~~D~~~~~--------~~~- 252 (356)
+-+++++||||.=||..+..++.+.|. -+++.+|. +...+.+ .-...|++++++..+.. ++.
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 346899999999999999999999986 46788885 4444333 33367899998876521 122
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
|.++. .+|.+ .....+.++.+++++||.|++-....+.
T Consensus 151 DfaFv----DadK~-nY~~y~e~~l~Llr~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFV----DADKD-NYSNYYERLLRLLRVGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEE----ccchH-HHHHHHHHHHhhcccccEEEEeccccCC
Confidence 88775 34543 3569999999999999998886555543
No 234
>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional
Probab=96.65 E-value=0.0034 Score=48.16 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 26 LPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 26 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
...+|.--.++.|+..|.+. ++.++.||++.++++ +. .+.+.|+.|...|+++.+.+...-.|++++
T Consensus 9 ~fkaLadptRl~IL~~L~~~---~~~~v~ela~~l~ls------qs-tvS~HL~~L~~AGLV~~~r~Gr~~~Y~l~~ 75 (117)
T PRK10141 9 LFKILSDETRLGIVLLLRES---GELCVCDLCTALDQS------QP-KISRHLALLRESGLLLDRKQGKWVHYRLSP 75 (117)
T ss_pred HHHHhCCHHHHHHHHHHHHc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEEEEEcCEEEEEECc
Confidence 34566666888899999764 589999999999997 77 899999999999999976432223466654
No 235
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.61 E-value=0.016 Score=47.57 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=64.4
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEc-cCCCC---------CCC
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGG-DFFES---------VPE 251 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~-D~~~~---------~~~ 251 (356)
++-+++.-+++..+|||+||..|.++.-..++. |+-.+.++|+-.+.. ..++.++.+ |+.+| .|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCC
Confidence 334444446788999999999999998887766 998999999643221 134555555 55543 232
Q ss_pred C--cEEEecccccCC----------ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 252 A--DTILMKWVLSSF----------DDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 252 ~--D~i~~~~vlh~~----------~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
- |+|++- +.++- .-+-|..+|.-....+.|+|.++.--+
T Consensus 135 r~VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w 185 (232)
T KOG4589|consen 135 RPVDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW 185 (232)
T ss_pred CcccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe
Confidence 2 666542 22211 122355566666667788888777433
No 236
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0054 Score=48.15 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=48.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCC-C--cEEEecccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPE-A--DTILMKWVL 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~-~--D~i~~~~vl 261 (356)
.+..++|+|||.|-+... -..|+. .++|+|+ |..++.+.++ -++++.+.|+.++.+. + |..++.--+
T Consensus 48 Egkkl~DLgcgcGmLs~a--~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIA--FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHH--hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 568999999999999843 334544 5899997 9999988765 2467788888774443 2 766665443
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.47 E-value=0.024 Score=46.98 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=65.6
Q ss_pred hcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCCcEEEecccc
Q 018405 188 YKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEADTILMKWVL 261 (356)
Q Consensus 188 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~D~i~~~~vl 261 (356)
-++.-..++|||+|.|+|..++.-++... ..++..|. |......+-+ -.|.++..|..-+.+..|+|+...++
T Consensus 74 ~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlf 152 (218)
T COG3897 74 HPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLF 152 (218)
T ss_pred CccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeecee
Confidence 34355679999999999998887665432 23444554 4444433322 23566677766533344999999999
Q ss_pred cCCChHHHHHHHHHHHHhCC-CCCEEEEEecccCC
Q 018405 262 SSFDDEQSLKLLKNCYKALP-DGGKLLNVNVTIPE 295 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~-pgG~lii~e~~~~~ 295 (356)
++.+ ...+++. +...++ .|-.+++-++-.+.
T Consensus 153 y~~~--~a~~l~~-~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 153 YNHT--EADRLIP-WKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred cCch--HHHHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence 9864 3667777 555555 45566665655443
No 238
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=96.46 E-value=0.0044 Score=44.21 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=47.2
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC----cceecchhch
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ----RLYSLASVAK 105 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~----~~y~~t~~~~ 105 (356)
++++|...|... +..+..+|.+.+|++ .. .+.+.|+.|...|+++......+ -.|++|+.|+
T Consensus 1 vRl~Il~~L~~~---~~~~f~~L~~~l~lt------~g-~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr 66 (80)
T PF13601_consen 1 VRLAILALLYAN---EEATFSELKEELGLT------DG-NLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGR 66 (80)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTT--------HH-HHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHH
T ss_pred CHHHHHHHHhhc---CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHH
Confidence 356777788774 489999999999997 77 99999999999999997533221 2599999987
No 239
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.42 E-value=0.02 Score=51.69 Aligned_cols=146 Identities=16% Similarity=0.099 Sum_probs=96.3
Q ss_pred CCceEEEEcCCccHHHHHHHHhCC-CCeEEEccchHHHHhCCCC---------CCceEEEccCCC-CCCC----------
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYP-RIKGINYDLPYVIKNAPSY---------LGIEHVGGDFFE-SVPE---------- 251 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~---------~~v~~~~~D~~~-~~~~---------- 251 (356)
+...|+-+|||-=.-+.++-. | ++++.-+|.|++++.-++. .+++++..|+++ ++++
T Consensus 92 g~~qvViLgaGLDTRayRl~~--~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLDW--PKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeecCC--CCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 368999999997766655543 4 5888999999987754332 278999999995 5432
Q ss_pred C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC---chhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405 252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN---SATSREISILDTICLFQVPHGRERTKQE 327 (356)
Q Consensus 252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~e 327 (356)
. -++++-.++-+++.+...++|+.|...+.||..++............ ..........+....- .........+
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~e 247 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGE--LVYFGDDPAE 247 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccc--ceeccCCHHH
Confidence 1 68899999999999999999999999999998887754311111000 0000000000000000 0011235789
Q ss_pred HHHHHHHcCCcceeE
Q 018405 328 YSELAIKAGFKGVNY 342 (356)
Q Consensus 328 ~~~ll~~aGf~~~~~ 342 (356)
+..++.+.||.....
T Consensus 248 ~~~~l~~~g~~~~~~ 262 (297)
T COG3315 248 IETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHhcCEEEEec
Confidence 999999999988766
No 240
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=96.42 E-value=0.0027 Score=40.19 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=37.2
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
++.|...|.+ |+.++.||++.+|++ +. .+.+.|+.|...|+++
T Consensus 4 R~~Il~~L~~----~~~~~~el~~~l~~s------~~-~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSE----GPLTVSELAEELGLS------QS-TVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTT----SSEEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh----CCCchhhHHHhcccc------ch-HHHHHHHHHHHCcCee
Confidence 4567778877 599999999999997 77 8999999999999987
No 241
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=96.42 E-value=0.0063 Score=41.75 Aligned_cols=49 Identities=8% Similarity=0.233 Sum_probs=36.3
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhc
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVA 104 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~ 104 (356)
++.|..+|++.++++ .. .+.+.++.|...|+|+......+ ..|++|+.|
T Consensus 17 ~~~t~~~l~~~~~~~------~~-~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G 68 (68)
T PF13463_consen 17 GPMTQSDLAERLGIS------KS-TVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG 68 (68)
T ss_dssp S-BEHHHHHHHTT--------HH-HHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence 599999999999997 67 89999999999999976433222 358888764
No 242
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.39 E-value=0.0052 Score=57.14 Aligned_cols=51 Identities=10% Similarity=0.078 Sum_probs=41.2
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE 247 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 247 (356)
.+|||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999888763 7999995 7787777653 468888888765
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.39 E-value=0.013 Score=52.10 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=57.1
Q ss_pred CCceEEEEcCCccHHHHH-HHHh-CCCCeEEEccc-hHHHHhCCC--------CCCceEEEccCCC-CC--CCCcEEEec
Q 018405 193 HVKKLVDVGGGLGATLNM-IISK-YPRIKGINYDL-PYVIKNAPS--------YLGIEHVGGDFFE-SV--PEADTILMK 258 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~-l~~~-~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~~--~~~D~i~~~ 258 (356)
.+.+|+=||||.=-++.- +++. .++..++++|. |...+.+++ ..+++|+.+|..+ .. .+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 357999999997665544 4443 46788999996 777666643 2679999999876 32 233988887
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
.... ++.++..++|.++.+.|+||.++++-
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 6654 33456899999999999999988884
No 244
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=96.31 E-value=0.0065 Score=43.00 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=38.4
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
++.+..+|+..++++ .. .+.+.|+.|...|++. . +++.|.+|+.|..+.
T Consensus 18 ~~~~~t~i~~~~~L~------~~-~~~~yL~~L~~~gLI~---~-~~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 18 GGAKKTEIMYKANLN------YS-TLKKYLKELEEKGLIK---K-KDGKYRLTEKGKEFL 66 (77)
T ss_dssp T-B-HHHHHTTST--------HH-HHHHHHHHHHHTTSEE---E-ETTEEEE-HHHHHHH
T ss_pred CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCcCee---C-CCCEEEECccHHHHH
Confidence 589999999999997 77 9999999999999997 3 359999999998443
No 245
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.032 Score=47.95 Aligned_cols=96 Identities=18% Similarity=0.338 Sum_probs=73.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCC----CeEEEccc-hHHHHhC-----CCCCCceE--EEccCCC---CCCCC---cE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPR----IKGINYDL-PYVIKNA-----PSYLGIEH--VGGDFFE---SVPEA---DT 254 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a-----~~~~~v~~--~~~D~~~---~~~~~---D~ 254 (356)
+...++|+|+|+..=+..++..+.+ ++++-+|. ..+++.. +.++.+++ +++|+.. ..|.. =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 5789999999999988888888866 78999996 4444322 23465544 5678765 23433 34
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
++...+|-+++.++|..+|.+++.+|+||-.+++
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 5678899999999999999999999999988777
No 246
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.27 E-value=0.01 Score=54.22 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=63.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHh-------CCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCC-C-CC--
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISK-------YPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFE-S-VP-- 250 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~-~~-- 250 (356)
..+..+|+|-+||+|.++.++.+. .+...+.++|. +..+..++.+ ....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 556779999999999999988874 37788999996 6655544321 234588888876 3 22
Q ss_pred CC-cEEEecccccC--CCh-----------------HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 251 EA-DTILMKWVLSS--FDD-----------------EQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 251 ~~-D~i~~~~vlh~--~~~-----------------~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
.. |+|++.--+-. |.+ ..-..++..+.+.|++||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 22 99987422211 111 112358889999999999987754
No 247
>PHA00738 putative HTH transcription regulator
Probab=96.24 E-value=0.0087 Score=44.47 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=47.0
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
.++.|++.|... ++.++.+|++.++++ .. .+.+.|+.|...|+|..+.+...-.|++++.
T Consensus 13 tRr~IL~lL~~~---e~~~V~eLae~l~lS------Qp-tVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~ 72 (108)
T PHA00738 13 LRRKILELIAEN---YILSASLISHTLLLS------YT-TVLRHLKILNEQGYIELYKEGRTLYAKIREN 72 (108)
T ss_pred HHHHHHHHHHHc---CCccHHHHHHhhCCC------HH-HHHHHHHHHHHCCceEEEEECCEEEEEECCC
Confidence 567788888874 379999999999997 66 8999999999999999764322345665543
No 248
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.088 Score=46.93 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=98.6
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC--CCCeEEEccchHHHHhCCC---C-------------------------CCceE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY--PRIKGINYDLPYVIKNAPS---Y-------------------------LGIEH 240 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~---~-------------------------~~v~~ 240 (356)
..+...|+.+|||.-.+...+...+ +.++++-+|.|.++..--. . ++...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 3477899999999999999999987 8889999998776443211 0 23344
Q ss_pred EEccCCC--CC-----C----CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhh
Q 018405 241 VGGDFFE--SV-----P----EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREIS 307 (356)
Q Consensus 241 ~~~D~~~--~~-----~----~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~ 307 (356)
...|..+ .. + .. -++++--+|-+++.+....+++-+.+... .+.+++.|.+.+.++ +..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~-------Fg~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDR-------FGK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCCh-------HHH
Confidence 4445542 00 0 11 46677778889999999999999888764 678888899986542 222
Q ss_pred hhhhhhhhh---cCC-CccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 308 ILDTICLFQ---VPH-GRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 308 ~~~~~~~~~---~~~-~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
.+--+.... .++ -...|.+..++-+.++||+.+.+..+
T Consensus 237 vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 222111110 000 12347888899999999998887664
No 249
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=96.23 E-value=0.0071 Score=43.49 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=37.4
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
++.|..+||+.++++ +. .+++++..|...|+++... ..+|.|.++..
T Consensus 24 ~~~s~~eiA~~~~i~------~~-~l~kil~~L~~~Gli~s~~-G~~GGy~L~~~ 70 (83)
T PF02082_consen 24 KPVSSKEIAERLGIS------PS-YLRKILQKLKKAGLIESSR-GRGGGYRLARP 70 (83)
T ss_dssp C-BEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEET-STTSEEEESS-
T ss_pred CCCCHHHHHHHHCcC------HH-HHHHHHHHHhhCCeeEecC-CCCCceeecCC
Confidence 469999999999997 88 9999999999999999642 22488888643
No 250
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=96.21 E-value=0.0046 Score=41.56 Aligned_cols=53 Identities=11% Similarity=0.289 Sum_probs=42.8
Q ss_pred HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+|.--.++.|++.|... +|.|+.|||+.+|++ +. .+.+.|+.|...|+|+.+
T Consensus 5 ~aL~~p~R~~Il~~L~~~---~~~t~~ela~~l~~~------~~-t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 5 KALSDPTRLRILRLLASN---GPMTVSELAEELGIS------QS-TVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHTSHHHHHHHHHHHHC---STBEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHhcC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEEe
Confidence 344445677888888443 599999999999997 77 899999999999999954
No 251
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=96.18 E-value=0.0043 Score=42.72 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=43.4
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
.+..++..|-.. |+.|+.|||+.+|++ .. .+.+.|+-|...|++..... ....|+..
T Consensus 9 ~E~~vy~~Ll~~---~~~t~~eIa~~l~i~------~~-~v~~~L~~L~~~GlV~~~~~-~~~~Y~a~ 65 (68)
T PF01978_consen 9 NEAKVYLALLKN---GPATAEEIAEELGIS------RS-TVYRALKSLEEKGLVEREEG-RPKVYRAV 65 (68)
T ss_dssp HHHHHHHHHHHH---CHEEHHHHHHHHTSS------HH-HHHHHHHHHHHTTSEEEEEE-CCEEEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEcC-ceEEEEEe
Confidence 344566666543 699999999999997 77 89999999999999997542 23455543
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.13 E-value=0.0034 Score=54.37 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCC--cEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEA--DTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~--D~i~~~~vlh~ 263 (356)
+.+.+|+|||||.--++.-.....|+.+++++|+ ...++..... .+.++...|.....|.. |+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4589999999999999998888889999999997 6665554332 56778888999854443 99999999998
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
+..+.. ..--++-+.++. -.++|..+.
T Consensus 184 le~q~~-g~g~~ll~~~~~-~~~vVSfPt 210 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALRS-PHVVVSFPT 210 (251)
T ss_dssp HHHHST-THHHHHHHHSCE-SEEEEEEES
T ss_pred HHHHhc-chHHHHHHHhCC-CeEEEeccc
Confidence 754333 222334444442 255554443
No 253
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.12 E-value=0.006 Score=56.93 Aligned_cols=51 Identities=10% Similarity=0.073 Sum_probs=40.6
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE 247 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 247 (356)
.+|||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988754 7888885 7777766543 468888888754
No 254
>COG1414 IclR Transcriptional regulator [Transcription]
Probab=96.11 E-value=0.0096 Score=52.39 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=46.5
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
+.|++.|.+.+ ++.++.|||+++|++ +. -+.|+|..|+..|++..+. .+++|++++..
T Consensus 7 l~iL~~l~~~~--~~l~l~ela~~~glp------ks-T~~RlL~tL~~~G~v~~d~--~~g~Y~Lg~~~ 64 (246)
T COG1414 7 LAILDLLAEGP--GGLSLAELAERLGLP------KS-TVHRLLQTLVELGYVEQDP--EDGRYRLGPRL 64 (246)
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCEEEcC--CCCcEeehHHH
Confidence 45778888743 346799999999997 66 8999999999999999542 24789998754
No 255
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.10 E-value=0.0015 Score=49.35 Aligned_cols=90 Identities=22% Similarity=0.242 Sum_probs=39.3
Q ss_pred EEEcCCccHHHHHHHHhCCCC---eEEEccc-h---HHHHhCCC---CCCceEEEccCCCC---CC-CC-cEEEeccccc
Q 018405 198 VDVGGGLGATLNMIISKYPRI---KGINYDL-P---YVIKNAPS---YLGIEHVGGDFFES---VP-EA-DTILMKWVLS 262 (356)
Q Consensus 198 LDiG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~---~~~v~~~~~D~~~~---~~-~~-D~i~~~~vlh 262 (356)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.+|..+. .+ .. |++++=. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999999877655 5788885 5 23333322 26799999998652 23 23 8887743 33
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
.. +....-|+.+.+.|+|||.+++-|
T Consensus 80 ~~--~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 SY--EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -H--HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CH--HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 33 567889999999999999888754
No 256
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.05 E-value=0.045 Score=45.69 Aligned_cols=132 Identities=17% Similarity=0.091 Sum_probs=88.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-h----HHHHhCCCCCCceEEEccCCCCCC-----CC-cEEEecc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-P----YVIKNAPSYLGIEHVGGDFFESVP-----EA-DTILMKW 259 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~----~~~~~a~~~~~v~~~~~D~~~~~~-----~~-D~i~~~~ 259 (356)
+++..+||-+|+.+|....+++.-.++-.+.+++. | +.+..+.+++|+--+.+|...|+. +. |+|+.-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D- 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD- 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-
Confidence 77899999999999999999999887555555553 3 456777888999999999988642 23 887652
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKG 339 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 339 (356)
+- ..++..-+..++..-|++||.+++.=-...-+...+ -.. -..+-.+-|++.||++
T Consensus 153 VA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d-------------------p~~-vf~~ev~kL~~~~f~i 209 (231)
T COG1889 153 VA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD-------------------PEE-VFKDEVEKLEEGGFEI 209 (231)
T ss_pred cC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCC-------------------HHH-HHHHHHHHHHhcCcee
Confidence 21 224567778889999999997766422111110000 000 1122335668889999
Q ss_pred eeEEEcc
Q 018405 340 VNYEYGA 346 (356)
Q Consensus 340 ~~~~~~~ 346 (356)
.+...+.
T Consensus 210 ~e~~~Le 216 (231)
T COG1889 210 LEVVDLE 216 (231)
T ss_pred eEEeccC
Confidence 9887764
No 257
>PRK11050 manganese transport regulator MntR; Provisional
Probab=96.05 E-value=0.062 Score=43.49 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=62.8
Q ss_pred cccchHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhh
Q 018405 4 MADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVS 83 (356)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~ 83 (356)
.+|-..+++.+..+...-.....-..+. -|...+... ++.+..+||+.++++ +. .+.++++.|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~e~~l~-----~I~~~l~~~---~~~t~~eLA~~l~is------~s-tVsr~l~~Le~ 77 (152)
T PRK11050 13 LVDVEEHVEGFRQVREAHRRELIEDYVE-----LIADLIAEV---GEARQVDIAARLGVS------QP-TVAKMLKRLAR 77 (152)
T ss_pred CCCcchhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHhc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHH
Confidence 4566667777777766665544444443 255566654 589999999999997 77 89999999999
Q ss_pred CCcccceeeCCCcceecchhchHhh
Q 018405 84 YNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 84 ~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
.|++... ..+.+.+|+.|..+.
T Consensus 78 ~GlI~r~---~~~~v~LT~~G~~l~ 99 (152)
T PRK11050 78 DGLVEMR---PYRGVFLTPEGEKLA 99 (152)
T ss_pred CCCEEEe---cCCceEECchHHHHH
Confidence 9999842 235678888776544
No 258
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.04 E-value=0.008 Score=47.99 Aligned_cols=52 Identities=15% Similarity=0.170 Sum_probs=40.3
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC
Q 018405 196 KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE 247 (356)
Q Consensus 196 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~ 247 (356)
.++|||||.|.++..+++.+|+.+++++|. |...+.+++. +++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 389999999999999999999999999995 7776655432 346666655544
No 259
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.99 E-value=0.089 Score=48.49 Aligned_cols=105 Identities=20% Similarity=0.312 Sum_probs=60.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHh--------C--------CCCeEEEccchH-----HHHhCC-------CCCC--ceE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISK--------Y--------PRIKGINYDLPY-----VIKNAP-------SYLG--IEH 240 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~--------~--------p~~~~~~~D~~~-----~~~~a~-------~~~~--v~~ 240 (356)
.++..+|+|+||.+|..+..+... + |.+.++.-|+|. ..+... .... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456789999999999987765432 1 345667777763 111110 0122 344
Q ss_pred EEccCCC-CCCCC--cEEEecccccCCCh-------------------------------------HHHHHHHHHHHHhC
Q 018405 241 VGGDFFE-SVPEA--DTILMKWVLSSFDD-------------------------------------EQSLKLLKNCYKAL 280 (356)
Q Consensus 241 ~~~D~~~-~~~~~--D~i~~~~vlh~~~~-------------------------------------~~~~~~L~~~~~~L 280 (356)
+.+.|.. -+|.. |+++++..||.++. .|...+|+.=.+=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 6788888 67876 99999999997652 11223444444568
Q ss_pred CCCCEEEEEecccCC
Q 018405 281 PDGGKLLNVNVTIPE 295 (356)
Q Consensus 281 ~pgG~lii~e~~~~~ 295 (356)
+|||++++.-...++
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 999999998766655
No 260
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.98 E-value=0.027 Score=55.40 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=43.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCC--------CeEEEccc-hHHHHhCCCC----C--CceEEEccCCCC-------C-
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPR--------IKGINYDL-PYVIKNAPSY----L--GIEHVGGDFFES-------V- 249 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~~----~--~v~~~~~D~~~~-------~- 249 (356)
...+|||.|||+|.++..++...+. ..+.++|. +..+..++.. . .+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4579999999999999999887752 45788886 6666555321 2 345555554431 1
Q ss_pred CCCcEEEec
Q 018405 250 PEADTILMK 258 (356)
Q Consensus 250 ~~~D~i~~~ 258 (356)
+..|+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 123998873
No 261
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=95.94 E-value=0.003 Score=51.45 Aligned_cols=61 Identities=25% Similarity=0.425 Sum_probs=41.6
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---CC--C-CcEEEec
Q 018405 196 KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---VP--E-ADTILMK 258 (356)
Q Consensus 196 ~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~--~-~D~i~~~ 258 (356)
.|+|+.||.|..+..+++.+.. ++.+|. |..++.++.+ ++|+++.+|+++. .. . .|+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~--Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDR--VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-E--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCe--EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 6999999999999999998764 666664 6655555432 5899999999872 11 2 3888764
No 262
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.93 E-value=0.057 Score=55.05 Aligned_cols=114 Identities=17% Similarity=0.092 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHhcCC-CCCceEEEEcCCccHHHHHHHHhC----C-----------------------------------
Q 018405 177 TCVVMEKVLESYKGF-EHVKKLVDVGGGLGATLNMIISKY----P----------------------------------- 216 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~----p----------------------------------- 216 (356)
....+..++.... + ++...++|-.||+|.++++.+... |
T Consensus 174 ~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 174 KENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred cHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 3445666666444 6 567899999999999998876521 1
Q ss_pred ---CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC-C---CcEEEecccccC-CC-hHHHHHHHHHHHH
Q 018405 217 ---RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP-E---ADTILMKWVLSS-FD-DEQSLKLLKNCYK 278 (356)
Q Consensus 217 ---~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~---~D~i~~~~vlh~-~~-~~~~~~~L~~~~~ 278 (356)
..+++++|. +.+++.|+.+ +++++..+|+.+ +.+ . .|+|+++--.-. +. .++...+.+.+-+
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~ 332 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGR 332 (702)
T ss_pred cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHH
Confidence 236899996 8888777653 458899999987 333 1 399988633211 22 2334445444444
Q ss_pred hC---CCCCEEEEEec
Q 018405 279 AL---PDGGKLLNVNV 291 (356)
Q Consensus 279 ~L---~pgG~lii~e~ 291 (356)
.+ .||++++++..
T Consensus 333 ~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 333 RLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHhCCCCeEEEEeC
Confidence 44 38888877654
No 263
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.86 E-value=0.012 Score=52.52 Aligned_cols=98 Identities=21% Similarity=0.350 Sum_probs=69.8
Q ss_pred CceEEEEcCCccHHHHHHHHhC--------------------CCCeEEEccc---hHHHHhCCC----C-----------
Q 018405 194 VKKLVDVGGGLGATLNMIISKY--------------------PRIKGINYDL---PYVIKNAPS----Y----------- 235 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~----~----------- 235 (356)
..+||-||||.|.=..+++..+ +.+.++.+|+ ..++..... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999998776666655 2357788886 333332210 0
Q ss_pred --------CCceEEEccCCC-CCC---------CCcEEEecccccCC---ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 236 --------LGIEHVGGDFFE-SVP---------EADTILMKWVLSSF---DDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 236 --------~~v~~~~~D~~~-~~~---------~~D~i~~~~vlh~~---~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
-+++|...|+.+ ..+ ..++|.+.++++.+ +..+..++|.++-+.++||..|+|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 147889999987 321 23888887777653 345678999999999999999999985
No 264
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=95.84 E-value=0.013 Score=37.24 Aligned_cols=44 Identities=9% Similarity=0.312 Sum_probs=36.5
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
+..|+..|.+. ++.|..|||+.+|++ .. .+.+.++-|...|+++
T Consensus 5 ~~~Il~~l~~~---~~~t~~ela~~~~is------~~-tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLREN---PRITQKELAEKLGIS------RS-TVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHC---TTS-HHHHHHHHTS-------HH-HHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCcCcC
Confidence 45678888886 479999999999997 67 8999999999999974
No 265
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=95.69 E-value=0.042 Score=37.39 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=37.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
++.|..+||+.+|++ +. .+.+.|+.|...|++... ..+.|.+++
T Consensus 24 ~~~s~~ela~~~g~s------~~-tv~r~l~~L~~~g~i~~~---~~~~~~l~~ 67 (67)
T cd00092 24 LPLTRQEIADYLGLT------RE-TVSRTLKELEEEGLISRR---GRGKYRVNP 67 (67)
T ss_pred CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEec---CCCeEEeCC
Confidence 489999999999997 77 899999999999999953 236787753
No 266
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.19 Score=45.82 Aligned_cols=102 Identities=16% Similarity=0.117 Sum_probs=72.6
Q ss_pred hcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEc-cCCC-CCCCC--cEEE
Q 018405 188 YKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGG-DFFE-SVPEA--DTIL 256 (356)
Q Consensus 188 ~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~-D~~~-~~~~~--D~i~ 256 (356)
+.+..++.+|||==||||.++.+..- -+++++|.|. ..+++-++.+ ....+... |+.. |+++. |.|+
T Consensus 192 La~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIa 269 (347)
T COG1041 192 LARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIA 269 (347)
T ss_pred HhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEE
Confidence 44466788999999999999987654 6788999996 7788877654 23333444 8777 77764 8877
Q ss_pred ec-----cc-ccCCC-hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 257 MK-----WV-LSSFD-DEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 257 ~~-----~v-lh~~~-~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+- .. ..-.. ++-..++|+.+.+.|++||++++.-+
T Consensus 270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 51 11 11111 34467999999999999999998544
No 267
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.64 E-value=0.096 Score=47.98 Aligned_cols=96 Identities=22% Similarity=0.197 Sum_probs=73.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--CC-CCCcEEEecccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--SV-PEADTILMKWVL 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~-~~~D~i~~~~vl 261 (356)
.+.+|||.=+|.|.++..+++... .+++.+|+ |..++..+++ ++++.+.||..+ +. +.+|-|++...-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 588999999999999999888543 33899996 8876665442 458899999988 33 346999987653
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
...+++..+.+.+++||.+-..+...++
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 2467777888888899999988877654
No 268
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=95.64 E-value=0.031 Score=47.60 Aligned_cols=60 Identities=18% Similarity=0.334 Sum_probs=47.2
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-----CcceecchhchH
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-----QRLYSLASVAKY 106 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-----~~~y~~t~~~~~ 106 (356)
.|...|.++ ||.|+.|||+++|++ +. .+++.|+.|++.|+++.....+ .-.|++|..+..
T Consensus 15 ~il~lL~~~---g~~sa~elA~~Lgis------~~-avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 15 RILELLKKS---GPVSADELAEELGIS------PM-AVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHHhcc---CCccHHHHHHHhCCC------HH-HHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 355566665 699999999999997 77 9999999999999999763221 135888887764
No 269
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=95.63 E-value=0.064 Score=50.20 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=72.1
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC--------CCceEEEccCCCCC----CC---CcEE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY--------LGIEHVGGDFFESV----PE---ADTI 255 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~----~~---~D~i 255 (356)
...+|||+=|=||.++...+. .++ +++.+|. ...++-|+++ .++.++++|+++.. .. .|+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 488999999999999988777 455 7999996 6677776653 46889999998731 22 2999
Q ss_pred Eecc------cccCCC-hHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 256 LMKW------VLSSFD-DEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 256 ~~~~------vlh~~~-~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
++-- -=.-|+ ..+-..++..+.+.|+|||.++++....
T Consensus 295 ilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 8611 000021 2346789999999999999999976543
No 270
>PRK11569 transcriptional repressor IclR; Provisional
Probab=95.62 E-value=0.019 Score=51.48 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=45.7
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
+.|++.|.+.+ ++.|+.|||+.+|++ .. -+.|+|..|+..|++..+ ...++|++.+..
T Consensus 31 l~IL~~l~~~~--~~~~lseia~~lglp------ks-Tv~RlL~tL~~~G~l~~~--~~~~~Y~lG~~l 88 (274)
T PRK11569 31 LKLLEWIAESN--GSVALTELAQQAGLP------NS-TTHRLLTTMQQQGFVRQV--GELGHWAIGAHA 88 (274)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEc--CCCCeEecCHHH
Confidence 45666676542 589999999999997 66 899999999999999853 224889987654
No 271
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=95.61 E-value=0.018 Score=51.12 Aligned_cols=58 Identities=10% Similarity=0.244 Sum_probs=45.5
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
+.|++.|... ++.|+.|||+++|++ +. -+.|+|+.|+..|++..+ ..+++|++.+...
T Consensus 17 l~IL~~l~~~---~~l~l~eia~~lgl~------ks-tv~Rll~tL~~~G~l~~~--~~~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEE---REIGITELSQRVMMS------KS-TVYRFLQTMKTLGYVAQE--GESEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcC---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEc--CCCCcEEecHHHH
Confidence 3455666554 479999999999997 66 899999999999999953 2348899986543
No 272
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=95.57 E-value=0.021 Score=46.07 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=40.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
++.|+++||+..|++ |. .|+++|..|...|+|+... ..+|.|+|....
T Consensus 24 ~~~s~~~IA~~~~is------~~-~L~kil~~L~kaGlV~S~r-G~~GGy~Lar~~ 71 (150)
T COG1959 24 GPVSSAEIAERQGIS------PS-YLEKILSKLRKAGLVKSVR-GKGGGYRLARPP 71 (150)
T ss_pred CcccHHHHHHHhCcC------HH-HHHHHHHHHHHcCCEEeec-CCCCCccCCCCh
Confidence 488999999999998 88 9999999999999999753 335889887543
No 273
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=95.54 E-value=0.032 Score=40.77 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=45.6
Q ss_pred chhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
|+..|.. |+....||.+.+ |++ +. .|.+-|+.|.+.|++++...... -.|++|+.|..+.
T Consensus 10 IL~~l~~----g~~rf~el~~~l~~is------~~-~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 10 ILRALFQ----GPMRFSELQRRLPGIS------PK-VLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHTT----SSEEHHHHHHHSTTS-------HH-HHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHh----CCCcHHHHHHhcchhH------HH-HHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 4455555 599999999999 897 77 89999999999999997533221 3599999997655
No 274
>PRK09834 DNA-binding transcriptional activator MhpR; Provisional
Probab=95.54 E-value=0.022 Score=50.67 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=48.6
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
-+.|++.|...+ ++.|+.|||+.+|++ +. -+.|+|+.|+..|++.++. .++.|++++....+.
T Consensus 13 al~iL~~l~~~~--~~ls~~eia~~lgl~------ks-tv~RlL~tL~~~g~v~~~~--~~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 13 GLMVLRALNRLD--GGATVGLLAELTGLH------RT-TVRRLLETLQEEGYVRRSA--SDDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEec--CCCcEEEcHHHHHHH
Confidence 345667776543 469999999999997 66 8999999999999999642 247899987664433
No 275
>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.
Probab=95.50 E-value=0.021 Score=50.42 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=46.0
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
+.|++.|...+ ++.|+.|||+.+|++ +. -+.|+|..|+..|++.. + +++|++.+...
T Consensus 12 l~IL~~l~~~~--~~~~l~eia~~lglp------ks-T~~RlL~tL~~~G~l~~---~-~~~Y~lG~~~~ 68 (248)
T TIGR02431 12 LAVIEAFGAER--PRLTLTDVAEATGLT------RA-AARRFLLTLVELGYVTS---D-GRLFWLTPRVL 68 (248)
T ss_pred HHHHHHHhcCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEe---C-CCEEEecHHHH
Confidence 45677776542 589999999999997 66 89999999999999993 3 47899987543
No 276
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.46 E-value=0.059 Score=51.35 Aligned_cols=127 Identities=18% Similarity=0.238 Sum_probs=81.7
Q ss_pred hhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCC--CCceEEEEcCCccHHHHHHHHh----CCCCeEEEcc-chHH
Q 018405 156 YDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFE--HVKKLVDVGGGLGATLNMIISK----YPRIKGINYD-LPYV 228 (356)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D-~~~~ 228 (356)
|+-+++|+-.-..|++ .....+.+..++-+ ....|.-+|+|-|-+..+.+++ ...++..+++ .|..
T Consensus 335 YetFEkD~VKY~~Yq~-------Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNA 407 (649)
T KOG0822|consen 335 YETFEKDPVKYDQYQQ-------AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNA 407 (649)
T ss_pred hhhhhccchHHHHHHH-------HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcch
Confidence 4455666554444443 33566777666422 2568899999999887776553 2456677887 4665
Q ss_pred HHhCCCC------CCceEEEccCCC-CCC--CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 229 IKNAPSY------LGIEHVGGDFFE-SVP--EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 229 ~~~a~~~------~~v~~~~~D~~~-~~~--~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
+-..+.. .+|+++..||.+ ..| ++|++++-..-..-++|-..+-|.-+.+.|||+|..|=.
T Consensus 408 ivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 408 IVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred hhhhhhhchhhhcCeeEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 5444332 689999999998 443 349887643333223344557788888999999876543
No 277
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.45 E-value=0.039 Score=49.78 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE 247 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~ 247 (356)
..++++.+. ..+...++|.-+|.|..+..+++.+|+.+++++|. +.+++.+++. +|++++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777776 56778999999999999999999988889999996 8887776542 467777776654
No 278
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional
Probab=95.45 E-value=0.024 Score=50.69 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=45.7
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
+.|++.|.+.+ .+.|+.|||+.+|++ .. -+.|+|..|+..|+|..+. ..++|++.+..
T Consensus 28 l~IL~~~~~~~--~~~tl~eIa~~lglp------kS-tv~RlL~tL~~~G~l~~~~--~~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKSG--GSSSVSDISLNLDLP------LS-TTFRLLKVLQAADFVYQDS--QLGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhCC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEcC--CCCeEEecHHH
Confidence 45666776543 479999999999997 66 8999999999999998542 24889987644
No 279
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=95.43 E-value=0.043 Score=51.25 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=67.5
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC------CCceEEEccCCCC--C--CCCcEEEeccccc
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY------LGIEHVGGDFFES--V--PEADTILMKWVLS 262 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~--~--~~~D~i~~~~vlh 262 (356)
.+|||.-||+|..+.+++.+.++. +++..|. +..++.++++ .++++..+|...- . ...|+|.+-- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 689999999999999999986554 6888896 7777666543 3477888887752 1 1239888743 2
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
.. ...++..+.+.+++||.|.+.-
T Consensus 124 Gs----~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 GT----PAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CC----cHHHHHHHHHhcccCCEEEEEe
Confidence 22 3578888999999999999973
No 280
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=95.43 E-value=0.14 Score=40.90 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=46.1
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++..|... ++.|..+||+.++++ +. .+.+.++-|+..|+|.+...++++ ...+|+.|..+.
T Consensus 44 ~vL~~l~~~---~~~t~~eLa~~l~i~------~~-tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~ 108 (144)
T PRK11512 44 KVLCSIRCA---ACITPVELKKVLSVD------LG-ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHH
Confidence 446666654 589999999999998 77 899999999999999975333332 345666665443
No 281
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=95.34 E-value=0.034 Score=42.85 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=39.1
Q ss_pred hcCchhHHH-hCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceee
Q 018405 35 ELDVFEIIS-KAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV 92 (356)
Q Consensus 35 ~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~ 92 (356)
+..+|..|- .. ||.|+++||+.++.+ .. -+.|-|+-|...|++.++..
T Consensus 29 Dv~v~~~LL~~~---~~~tvdelae~lnr~------rS-tv~rsl~~L~~~GlV~Rek~ 77 (126)
T COG3355 29 DVEVYKALLEEN---GPLTVDELAEILNRS------RS-TVYRSLQNLLEAGLVEREKV 77 (126)
T ss_pred HHHHHHHHHhhc---CCcCHHHHHHHHCcc------HH-HHHHHHHHHHHcCCeeeeee
Confidence 345555565 44 699999999999997 66 89999999999999997654
No 282
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=95.29 E-value=0.095 Score=43.87 Aligned_cols=84 Identities=23% Similarity=0.285 Sum_probs=61.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC---------CCceEEEccCCC-C---------C-CCC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY---------LGIEHVGGDFFE-S---------V-PEA 252 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---------~~v~~~~~D~~~-~---------~-~~~ 252 (356)
+...|+.+|||-=....++....++++++-+|+|.+++.-++. .+.+++..|+.+ . + ++.
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 3459999999999999999988889999999999887654432 236789999986 2 1 122
Q ss_pred -cEEEecccccCCChHHHHHHHHHH
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNC 276 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~ 276 (356)
-++++-.++.+++.++...+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 688889999999999999998876
No 283
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=95.28 E-value=0.036 Score=42.70 Aligned_cols=65 Identities=11% Similarity=0.130 Sum_probs=50.4
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.+..++..|... ++.|..+||+.++++ +. .+.+.++-|...|+|.+...+.+ -.+.+|+.|..+.
T Consensus 29 ~q~~iL~~l~~~---~~~t~~ela~~~~~~------~~-tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~ 96 (118)
T TIGR02337 29 QQWRILRILAEQ---GSMEFTQLANQACIL------RP-SLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALY 96 (118)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHhCCC------ch-hHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHH
Confidence 444577777775 589999999999997 66 89999999999999997532222 2688898887544
No 284
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=95.21 E-value=0.019 Score=38.17 Aligned_cols=47 Identities=9% Similarity=0.254 Sum_probs=38.0
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceee
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV 92 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~ 92 (356)
+.++..|.+. ++.|..+||+.++++ +. .+.++++-|...|++++...
T Consensus 6 ~~iL~~l~~~---~~~~~~~la~~~~~~------~~-~~t~~i~~L~~~g~I~r~~~ 52 (59)
T PF01047_consen 6 FRILRILYEN---GGITQSELAEKLGIS------RS-TVTRIIKRLEKKGLIERERD 52 (59)
T ss_dssp HHHHHHHHHH---SSEEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEeccC
Confidence 3445556665 489999999999997 77 99999999999999997643
No 285
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=95.09 E-value=0.03 Score=37.49 Aligned_cols=49 Identities=10% Similarity=0.259 Sum_probs=37.9
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
+..++..|...+. ...|+.|||+.++++ +. .+.+.++.|...|+|+.+.
T Consensus 7 q~~vL~~l~~~~~-~~~t~~~la~~l~~~------~~-~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 7 QFRVLMALARHPG-EELTQSELAERLGIS------KS-TVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp HHHHHHHHHHSTT-SGEEHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHCCC-CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEeC
Confidence 3445666666531 128999999999997 77 9999999999999999753
No 286
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.08 E-value=0.022 Score=47.64 Aligned_cols=96 Identities=19% Similarity=0.111 Sum_probs=60.3
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC------CCCC-cEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES------VPEA-DTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~------~~~~-D~i~~ 257 (356)
...++||+=||+|.++.+.+.+... +++.+|. +..++..+++ +++.++..|.+.. .... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~-~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAK-SVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-S-EEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 4689999999999999998886533 6777785 5555554432 4578888886541 1233 99988
Q ss_pred cccccCCChHHHHHHHHHHH--HhCCCCCEEEEEecc
Q 018405 258 KWVLSSFDDEQSLKLLKNCY--KALPDGGKLLNVNVT 292 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~--~~L~pgG~lii~e~~ 292 (356)
----... . ...++|..+. .+|+++|.+++ |..
T Consensus 121 DPPY~~~-~-~~~~~l~~l~~~~~l~~~~~ii~-E~~ 154 (183)
T PF03602_consen 121 DPPYAKG-L-YYEELLELLAENNLLNEDGLIII-EHS 154 (183)
T ss_dssp --STTSC-H-HHHHHHHHHHHTTSEEEEEEEEE-EEE
T ss_pred CCCcccc-h-HHHHHHHHHHHCCCCCCCEEEEE-Eec
Confidence 5433321 1 1366777776 68888876666 443
No 287
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=95.07 E-value=0.055 Score=36.19 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=37.0
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
++.|..+|++.++++ +. .+.+.|+.|...|++..........|.++.
T Consensus 9 ~~~~~~~i~~~l~is------~~-~v~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 55 (66)
T smart00418 9 GELCVCELAEILGLS------QS-TVSHHLKKLREAGLVESRREGKRVYYSLTD 55 (66)
T ss_pred CCccHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeeeeecCCEEEEEEch
Confidence 589999999999997 66 899999999999999965322224555554
No 288
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.03 E-value=0.05 Score=49.11 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFF 246 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~ 246 (356)
..++++.+. ..+...++|.--|.|+++..+++++|+.+++++|. |.+++.++++ +|+.++..+|.
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 456777776 67888999999999999999999999999999996 8888776543 56666666554
No 289
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.03 E-value=0.033 Score=38.43 Aligned_cols=43 Identities=12% Similarity=0.288 Sum_probs=35.4
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
|.+.|.+. +..|+.|||.+++++ +. .++.+|+.|+..|.|.+.
T Consensus 5 i~~~l~~~---~~~S~~eLa~~~~~s------~~-~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRER---GRVSLAELAREFGIS------PE-AVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS----SEEHHHHHHHTT--------HH-HHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEEe
Confidence 45667775 689999999999997 88 999999999999999954
No 290
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=95.00 E-value=0.041 Score=34.56 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=34.3
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
+.|..+||+.+|++ +. .+.+.|+.|...|++.. . .+.|.+
T Consensus 8 ~~s~~~la~~l~~s------~~-tv~~~l~~L~~~g~l~~---~-~~~~~i 47 (48)
T smart00419 8 PLTRQEIAELLGLT------RE-TVSRTLKRLEKEGLISR---E-GGRIVI 47 (48)
T ss_pred ccCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE---e-CCEEEE
Confidence 68999999999997 77 89999999999999994 3 366764
No 291
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=94.99 E-value=0.14 Score=44.87 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=53.9
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhC----CCC---CCceEEEccCCC-CCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNA----PSY---LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~---~~v~~~~~D~~~-~~~ 250 (356)
+.-|+..+. ..+..+|++-|.|+|.++.++++.. |.-+..-+|. ..-.+.| +.. +++++...|+-. -++
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 456777777 8899999999999999999999866 6667777775 3333333 332 678888877765 333
Q ss_pred C----CcEEEe
Q 018405 251 E----ADTILM 257 (356)
Q Consensus 251 ~----~D~i~~ 257 (356)
. +|.|++
T Consensus 173 ~ks~~aDaVFL 183 (314)
T KOG2915|consen 173 IKSLKADAVFL 183 (314)
T ss_pred ccccccceEEE
Confidence 2 377766
No 292
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.97 E-value=0.15 Score=44.55 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=64.2
Q ss_pred CC-CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC------------CCceEEEccCCCC------CCC
Q 018405 191 FE-HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY------------LGIEHVGGDFFES------VPE 251 (356)
Q Consensus 191 ~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------~~v~~~~~D~~~~------~~~ 251 (356)
++ ...+||++|+|+|..++ ++.......++.-|.+......... ..+.....+-..+ .|.
T Consensus 83 ~~~~~~~vlELGsGtglvG~-~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGI-LAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred ccccceeEEEecCCccHHHH-HHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 44 46789999999995554 4444467788888876554433211 1344443333221 233
Q ss_pred -CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 252 -ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 252 -~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
.|+|+.+.++++- +....++.-++..|..++.+++.-...
T Consensus 162 ~~DlilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 162 PFDLILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred cccEEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 5999999999875 446788888888888888555544443
No 293
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=94.96 E-value=0.048 Score=43.22 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=38.4
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
++.|.++||+.++++ +. .++++|+.|...|++... +...|.|+++.
T Consensus 24 ~~~s~~~ia~~~~ip------~~-~l~kil~~L~~~glv~s~-~G~~Ggy~l~~ 69 (135)
T TIGR02010 24 GPVTLADISERQGIS------LS-YLEQLFAKLRKAGLVKSV-RGPGGGYQLGR 69 (135)
T ss_pred CcCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEEE-eCCCCCEeccC
Confidence 489999999999997 77 999999999999999863 23346788764
No 294
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=94.93 E-value=0.058 Score=43.11 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=42.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
|+.++.+||+.++++ +. .+.+.++.|...|+|.+. ..+.|++|+.|..+.
T Consensus 21 ~~~~~~ela~~l~vs------~~-svs~~l~~L~~~Gli~~~---~~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSVH------PS-SVTKMVQKLDKDEYLIYE---KYRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCCC------hh-HHHHHHHHHHHCCCEEEe---cCceEEECHHHHHHH
Confidence 588999999999997 67 899999999999999853 236799999986443
No 295
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.93 E-value=0.074 Score=50.67 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=67.5
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC--C-
Q 018405 179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE--S- 248 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~- 248 (356)
..+....+.+. ..+..+++|+=||.|.++..++++ ..++++++. +..++.|+.+ .+++|+.+|.++ +
T Consensus 280 kl~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 280 KLYETALEWLE-LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHHHHHHHHh-hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 33445555554 567789999999999999999964 446888885 7777776543 568999999876 2
Q ss_pred CC---CCcEEEecccccCCChHHHH-HHHHHHHHhCCCCCEEEE
Q 018405 249 VP---EADTILMKWVLSSFDDEQSL-KLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 249 ~~---~~D~i~~~~vlh~~~~~~~~-~~L~~~~~~L~pgG~lii 288 (356)
+. ..|+|+. +-|..-+. .+++.+. .++|...++|
T Consensus 357 ~~~~~~~d~Vvv-----DPPR~G~~~~~lk~l~-~~~p~~IvYV 394 (432)
T COG2265 357 WWEGYKPDVVVV-----DPPRAGADREVLKQLA-KLKPKRIVYV 394 (432)
T ss_pred ccccCCCCEEEE-----CCCCCCCCHHHHHHHH-hcCCCcEEEE
Confidence 21 1288877 33333334 4555444 4566666766
No 296
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=94.92 E-value=0.054 Score=46.19 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=47.8
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceee-CCCc----ceecchhchHhh
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV-DGQR----LYSLASVAKYFV 108 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~-~~~~----~y~~t~~~~~l~ 108 (356)
..|+..|... ++.|..+||+.+|++ +. .+++.|+.|...|+|++... .+.| .|++|+.+..+.
T Consensus 4 ~~IL~~L~~~---~~~t~~eLA~~lgis------~~-tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~ 71 (203)
T TIGR02702 4 EDILSYLLKQ---GQATAAALAEALAIS------PQ-AVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF 71 (203)
T ss_pred HHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence 3466677664 589999999999998 77 99999999999999986521 1123 378888776443
No 297
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=94.83 E-value=0.035 Score=49.70 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=66.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCCC------CCCcEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFESV------PEADTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~~------~~~D~i~~ 257 (356)
...+|||+=|=||.++...+.. .-.+++.+|. ...++.++++ .+++++..|+++.. ...|+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 5689999999999999976652 2336899996 6667666542 57899999998621 12299986
Q ss_pred ---cccccCCC-hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 258 ---KWVLSSFD-DEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 258 ---~~vlh~~~-~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
++.=..+. ..+-.++++++.++|+|||.|+.+..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 11111111 13467899999999999999887654
No 298
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.75 E-value=0.05 Score=40.54 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=26.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEcc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYD 224 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D 224 (356)
.+....+|||||+|.+.--|.. .+.++.++|
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD 87 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNS--EGYPGWGID 87 (112)
T ss_pred CCCCceEEccCCchHHHHHHHh--CCCCccccc
Confidence 4567899999999999888777 566788888
No 299
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=94.70 E-value=0.14 Score=42.45 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=40.2
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
..|+++|..+ |++|.++||..+|++ .. .+++.|..|...|++.+..
T Consensus 25 ~~Vl~~L~~~---g~~tdeeLA~~Lgi~------~~-~VRk~L~~L~e~gLv~~~r 70 (178)
T PRK06266 25 FEVLKALIKK---GEVTDEEIAEQTGIK------LN-TVRKILYKLYDARLADYKR 70 (178)
T ss_pred hHHHHHHHHc---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEEee
Confidence 3488888876 599999999999997 77 9999999999999999643
No 300
>COG4742 Predicted transcriptional regulator [Transcription]
Probab=94.63 E-value=0.06 Score=47.09 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=56.1
Q ss_pred HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
++....+..|+-.|.+ ||+|++||-..++++ +. .+..-++-|...|++. ++ ++.|++|..|..+.
T Consensus 9 if~SekRk~lLllL~e----gPkti~EI~~~l~vs------~~-ai~pqiKkL~~~~LV~---~~-~~~Y~LS~~G~iiv 73 (260)
T COG4742 9 LFLSEKRKDLLLLLKE----GPKTIEEIKNELNVS------SS-AILPQIKKLKDKGLVV---QE-GDRYSLSSLGKIIV 73 (260)
T ss_pred HHccHHHHHHHHHHHh----CCCCHHHHHHHhCCC------cH-HHHHHHHHHhhCCCEE---ec-CCEEEecchHHHHH
Confidence 3455577888888988 699999999999997 66 7888899999999999 44 59999999998766
Q ss_pred hC
Q 018405 109 RN 110 (356)
Q Consensus 109 ~~ 110 (356)
..
T Consensus 74 ~k 75 (260)
T COG4742 74 EK 75 (260)
T ss_pred HH
Confidence 43
No 301
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=94.61 E-value=0.054 Score=42.62 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=38.1
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
++.|..+||+.++++ +. .++++|+.|...|++.... ...|.|.++.-
T Consensus 24 ~~~s~~eia~~~~i~------~~-~v~~il~~L~~~gli~~~~-g~~ggy~l~~~ 70 (132)
T TIGR00738 24 GPVSVKEIAERQGIS------RS-YLEKILRTLRRAGLVESVR-GPGGGYRLARP 70 (132)
T ss_pred CcCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEecc-CCCCCccCCCC
Confidence 489999999999997 77 9999999999999998531 22367877543
No 302
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=94.60 E-value=0.092 Score=36.31 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=42.0
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
.++..+... +.+..||++.++++ .. .+.+.|+.|...|++..........|++++
T Consensus 11 ~il~~l~~~----~~~~~ei~~~~~i~------~~-~i~~~l~~L~~~g~i~~~~~~~~~~~~~~~ 65 (78)
T cd00090 11 RILRLLLEG----PLTVSELAERLGLS------QS-TVSRHLKKLEEAGLVESRREGRRVYYSLTD 65 (78)
T ss_pred HHHHHHHHC----CcCHHHHHHHHCcC------Hh-HHHHHHHHHHHCCCeEEEEeccEEEEEeCC
Confidence 455666653 58999999999997 66 899999999999999964322236677775
No 303
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=94.56 E-value=0.054 Score=44.38 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=38.7
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
++.|+++||+.++++ +. .+.++|..|...|+|... +..+|.|.+..
T Consensus 24 ~~vs~~eIA~~~~ip------~~-~l~kIl~~L~~aGLv~s~-rG~~GGy~Lar 69 (164)
T PRK10857 24 GPVPLADISERQGIS------LS-YLEQLFSRLRKNGLVSSV-RGPGGGYLLGK 69 (164)
T ss_pred CcCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEeC-CCCCCCeeccC
Confidence 489999999999997 77 999999999999999963 23347788753
No 304
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.56 E-value=0.09 Score=48.40 Aligned_cols=110 Identities=17% Similarity=0.322 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc---hHHHHh------------CCC-CCCceEEEcc
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL---PYVIKN------------APS-YLGIEHVGGD 244 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~------------a~~-~~~v~~~~~D 244 (356)
...+++.+. ..+.....|+|+|.|.....++.....-.-+|+.+ |.-+.. +.+ ...++++.++
T Consensus 181 l~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gs 259 (419)
T KOG3924|consen 181 LRSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGS 259 (419)
T ss_pred HHHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccc
Confidence 345566666 77889999999999999998877655545555552 222111 111 2457888899
Q ss_pred CCCC------CCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 245 FFES------VPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 245 ~~~~------~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
+..+ .+++++|++.++..+ ++...=++++..-+++|-+++-.++..+
T Consensus 260 f~~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 260 FLDPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred cCCHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEeccccccc
Confidence 8874 356799999998764 3344445588888999999999888876
No 305
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=94.54 E-value=0.069 Score=34.55 Aligned_cols=40 Identities=18% Similarity=0.469 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHH
Q 018405 27 PAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLR 79 (356)
Q Consensus 27 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~ 79 (356)
-.+|.+|.+.|-|+. .. ..|+.|||+.+|++ +. .+...||
T Consensus 6 ~e~L~~A~~~GYfd~-PR-----~~tl~elA~~lgis------~s-t~~~~LR 45 (53)
T PF04967_consen 6 REILKAAYELGYFDV-PR-----RITLEELAEELGIS------KS-TVSEHLR 45 (53)
T ss_pred HHHHHHHHHcCCCCC-CC-----cCCHHHHHHHhCCC------HH-HHHHHHH
Confidence 468999999999998 33 68999999999997 44 4444444
No 306
>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length. The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.
Probab=94.43 E-value=0.098 Score=37.90 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=49.6
Q ss_pred HHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHH----------HHhhCCcc-cceeeCCCcceec
Q 018405 32 AVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLR----------LLVSYNAL-HCSFVDGQRLYSL 100 (356)
Q Consensus 32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~----------~l~~~g~l-~~~~~~~~~~y~~ 100 (356)
.=++..++..|.+..| .+.++.|||..++++ +. .+..-|+ .|+.+|++ .+....+...|++
T Consensus 8 S~~R~~vl~~L~~~yp-~~~~~~eIar~v~~~------~s-nV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~l 79 (90)
T PF07381_consen 8 SKVRKKVLEYLCSIYP-EPAYPSEIARSVGSD------YS-NVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRL 79 (90)
T ss_pred HHHHHHHHHHHHHcCC-CcCCHHHHHHHHCCC------HH-HHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEe
Confidence 3456778888888633 589999999999997 66 5555553 68899999 4332233357999
Q ss_pred chhchHhh
Q 018405 101 ASVAKYFV 108 (356)
Q Consensus 101 t~~~~~l~ 108 (356)
|+.|..+.
T Consensus 80 T~~G~~~~ 87 (90)
T PF07381_consen 80 TEKGKRIA 87 (90)
T ss_pred ChhhhhHH
Confidence 99887543
No 307
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=94.24 E-value=0.062 Score=36.03 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=35.2
Q ss_pred CchhHHHh-CCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 37 DVFEIISK-AGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 37 glf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.|.+.|.. . +|.|..|||+++|++ .. -.+++|..|...|.+...
T Consensus 4 ~Il~~i~~~~---~p~~T~eiA~~~gls------~~-~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQN---GPLKTREIADALGLS------IY-QARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHHT---S-EEHHHHHHHHTS-------HH-HHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHcC---CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe
Confidence 35556655 3 599999999999997 77 899999999999999853
No 308
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.22 E-value=0.3 Score=45.80 Aligned_cols=110 Identities=17% Similarity=0.263 Sum_probs=62.5
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-------CCCeEEEccchH-----HHHhCCCC-------CCce--E
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-------PRIKGINYDLPY-----VIKNAPSY-------LGIE--H 240 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~~~-----~~~~a~~~-------~~v~--~ 240 (356)
..|++.+. -.+...|+|+|.|.|.--..|.+.+ |.+++|+++.|. .++.+.++ -+|. |
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef 178 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEF 178 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEE
Confidence 46777776 4466799999999997554444433 778899998622 23332221 2333 3
Q ss_pred EEc--cCCCC-------CCCCc--EEEecccccCCChH------HHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 241 VGG--DFFES-------VPEAD--TILMKWVLSSFDDE------QSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 241 ~~~--D~~~~-------~~~~D--~i~~~~vlh~~~~~------~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
... +-.+. ...++ +|-+...||++.++ ....+|+.++ .|+|. .++++|.-.+
T Consensus 179 ~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~-vvv~~E~ea~ 247 (374)
T PF03514_consen 179 HPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPK-VVVLVEQEAD 247 (374)
T ss_pred EecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCC-EEEEEeecCC
Confidence 331 11111 11122 33467778998633 2345777666 67886 5666666544
No 309
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.07 E-value=0.19 Score=47.87 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=63.1
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCe--EEEccchHHHHhCCCCCCceEEEccCCC---CCCCC-cEEEecccccCC
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIK--GINYDLPYVIKNAPSYLGIEHVGGDFFE---SVPEA-DTILMKWVLSSF 264 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~--~~~~D~~~~~~~a~~~~~v~~~~~D~~~---~~~~~-D~i~~~~vlh~~ 264 (356)
......|+|..+|.|.++.+|.+. |=+. ++-.+-+..+...-.+ ++-=+-+|.-+ .+|.. |+|-..+++..+
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~vIydR-GLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~ 440 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPVIYDR-GLIGVYHDWCEAFSTYPRTYDLLHADGLFSLY 440 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-CceEEEecccCCCCcchhhhhc-ccchhccchhhccCCCCcchhheehhhhhhhh
Confidence 446689999999999999999763 3211 1111112222222111 12223344434 34555 999988888776
Q ss_pred ChH-HHHHHHHHHHHhCCCCCEEEEEec
Q 018405 265 DDE-QSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 265 ~~~-~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
.+. +...+|-++-|.|+|||.++|-|.
T Consensus 441 ~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 441 KDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred cccccHHHHHHHhHhhcCCCceEEEecc
Confidence 433 567999999999999999999653
No 310
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=93.89 E-value=0.089 Score=42.63 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=39.5
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
++.|+.+||+..+++ +. .|+++|..|...|++.+.. ...|.|+++..
T Consensus 23 ~~~s~~eIA~~~~is------~~-~L~kIl~~L~~aGlv~S~r-G~~GGy~La~~ 69 (153)
T PRK11920 23 KLSRIPEIARAYGVS------EL-FLFKILQPLVEAGLVETVR-GRNGGVRLGRP 69 (153)
T ss_pred CcCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEeec-CCCCCeeecCC
Confidence 478999999999997 78 9999999999999999753 33588887643
No 311
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=93.85 E-value=0.13 Score=37.90 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=46.9
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC---CcceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG---QRLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~---~~~y~~t~~~~~l~ 108 (356)
++.++..|... ++.|..+|++.++++ +. .+.+.++-|+..|++......+ ...|.+|+.|..+.
T Consensus 12 ~~~il~~l~~~---~~~~~~~la~~~~~s------~~-~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 12 QFLVLRILYEE---GPLSVSELAKRLGVS------PS-TVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCCC------ch-hHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 45567777664 479999999999997 66 8999999999999998542111 13567777765433
No 312
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=93.76 E-value=0.12 Score=41.22 Aligned_cols=46 Identities=9% Similarity=0.032 Sum_probs=38.0
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
.+.|..+||+.+|++ +. .+++.|..|...|++..... ..|.|.+..
T Consensus 24 ~~~s~~~ia~~~~is------~~-~vrk~l~~L~~~Glv~s~~G-~~GG~~l~~ 69 (141)
T PRK11014 24 RMTSISEVTEVYGVS------RN-HMVKIINQLSRAGYVTAVRG-KNGGIRLGK 69 (141)
T ss_pred CccCHHHHHHHHCcC------HH-HHHHHHHHHHhCCEEEEecC-CCCCeeecC
Confidence 478999999999997 77 99999999999999997532 236787753
No 313
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=93.61 E-value=0.11 Score=44.41 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=46.9
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
.+..++..|.+. ++.+..+||+.++++ +. .+.+.|+.|...|++.+... ....|.+|+.|
T Consensus 144 ~~~~IL~~l~~~---g~~s~~eia~~l~is------~s-tv~r~L~~Le~~GlI~r~~~-r~~~~~lT~~G 203 (203)
T TIGR01884 144 EELKVLEVLKAE---GEKSVKNIAKKLGKS------LS-TISRHLRELEKKGLVEQKGR-KGKRYSLTKLG 203 (203)
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEcC-CccEEEeCCCC
Confidence 345677777765 478999999999997 67 89999999999999996531 23568887654
No 314
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.50 E-value=0.18 Score=43.00 Aligned_cols=94 Identities=26% Similarity=0.334 Sum_probs=65.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC----CC-----CeEEEccchHHHHhCCCCCCceEEEccCCCC---------CC--
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY----PR-----IKGINYDLPYVIKNAPSYLGIEHVGGDFFES---------VP-- 250 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~----p~-----~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~---------~~-- 250 (356)
+.+..|++|+.+-.|.++.-+.+++ |. -+++.+|+..|.. .++|.-+++|+.++ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence 5577899999999999988887765 21 1278888754433 25788889998873 22
Q ss_pred CCcEEEec-----ccccCCChHH----HHHHHHHHHHhCCCCCEEEE
Q 018405 251 EADTILMK-----WVLSSFDDEQ----SLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 251 ~~D~i~~~-----~vlh~~~~~~----~~~~L~~~~~~L~pgG~lii 288 (356)
.+|+|+|- --+|+++.-- ....|.-...+|+|||.++-
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 24999984 3578774321 33456666778999998875
No 315
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=93.49 E-value=0.18 Score=34.41 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=43.1
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
|++.|.+.+ +|++..+|++.+.....+ ..+. .++|.|++|...|++.. .+.+.+.+|+.|.
T Consensus 3 IL~~L~~~~--~P~g~~~l~~~L~~~g~~-~se~-avRrrLr~me~~Glt~~---~g~~G~~iT~~G~ 63 (66)
T PF08461_consen 3 ILRILAESD--KPLGRKQLAEELKLRGEE-LSEE-AVRRRLRAMERDGLTRK---VGRQGRIITEKGL 63 (66)
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHhcChh-hhHH-HHHHHHHHHHHCCCccc---cCCcccccCHHHH
Confidence 456676653 699999999998764111 1145 89999999999997773 3334457887764
No 316
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=93.42 E-value=0.098 Score=41.09 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=36.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
++.|+.|||++++++ +. .+.+.|+.|...|++.... ..+|.|.+.
T Consensus 24 ~~~s~~eia~~l~is------~~-~v~~~l~~L~~~Gli~~~~-g~~ggy~l~ 68 (130)
T TIGR02944 24 QPYSAAEIAEQTGLN------AP-TVSKILKQLSLAGIVTSKR-GVEGGYTLA 68 (130)
T ss_pred CCccHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEecC-CCCCChhhc
Confidence 589999999999997 77 9999999999999998531 223567664
No 317
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.36 E-value=1.1 Score=41.81 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCC--CeEEEccc-hHHHHhCCC----C--CCceEEEccCCC---CCCC---CcEE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPR--IKGINYDL-PYVIKNAPS----Y--LGIEHVGGDFFE---SVPE---ADTI 255 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~---~~~~---~D~i 255 (356)
..++.+|||..++.|.=+.++++..++ ..++.+|. +.-++.... . .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 667899999999999999999998876 45688885 443333222 1 345667766542 1221 3666
Q ss_pred Ee------cccc-------cCCChHH-------HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 256 LM------KWVL-------SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 256 ~~------~~vl-------h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
++ ..++ ..++.++ -.++|..+.+.|||||.|+-......
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 53 2233 3333332 34789999999999999998766554
No 318
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=93.34 E-value=0.16 Score=33.50 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=37.1
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
|.+.|... +..|++|||+.+|++ +. -++|=|..|...|++.+
T Consensus 5 Il~~l~~~---~~~s~~ela~~~~VS------~~-TiRRDl~~L~~~g~i~r 46 (57)
T PF08220_consen 5 ILELLKEK---GKVSVKELAEEFGVS------EM-TIRRDLNKLEKQGLIKR 46 (57)
T ss_pred HHHHHHHc---CCEEHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 56677775 699999999999998 77 89999999999999984
No 319
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=93.29 E-value=0.47 Score=45.12 Aligned_cols=100 Identities=20% Similarity=0.324 Sum_probs=71.9
Q ss_pred ceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhC-----CCCCCceEEEccCCC-CCCCC--cEEEecccccCC
Q 018405 195 KKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNA-----PSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSF 264 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a-----~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~ 264 (356)
-+++-+|||.-.+...+-+. +++ ++.+|. +.+++.. +.++...+...|+.. .+++. |+|+....++++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~d--I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal 127 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFED--ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDAL 127 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCC--ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccc
Confidence 39999999999988888773 343 455554 3333322 334668889999888 77754 999999999985
Q ss_pred -ChHH-------HHHHHHHHHHhCCCCCEEEEEecc--cCCC
Q 018405 265 -DDEQ-------SLKLLKNCYKALPDGGKLLNVNVT--IPEV 296 (356)
Q Consensus 265 -~~~~-------~~~~L~~~~~~L~pgG~lii~e~~--~~~~ 296 (356)
.+++ ....+..+.++++|||+++.+... .+..
T Consensus 128 ~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 128 FEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred cCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 2322 335789999999999999998774 4444
No 320
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=93.23 E-value=0.19 Score=40.69 Aligned_cols=51 Identities=8% Similarity=0.088 Sum_probs=43.8
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVR 109 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 109 (356)
|+....+||+.++++ |. -+...++-|...|+++++ ..+.+.+|+.|.....
T Consensus 23 ~~~~~~diA~~L~Vs------p~-sVt~ml~rL~~~GlV~~~---~y~gi~LT~~G~~~a~ 73 (154)
T COG1321 23 GFARTKDIAERLKVS------PP-SVTEMLKRLERLGLVEYE---PYGGVTLTEKGREKAK 73 (154)
T ss_pred CcccHHHHHHHhCCC------cH-HHHHHHHHHHHCCCeEEe---cCCCeEEChhhHHHHH
Confidence 689999999999998 77 888999999999999974 2478999999875554
No 321
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=93.16 E-value=0.13 Score=49.04 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=42.6
Q ss_pred CCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccC
Q 018405 190 GFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDF 245 (356)
Q Consensus 190 ~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~ 245 (356)
+++....++|+-||||.+...+++.. .+++++++ |+.++.|+.. .+.+|++|-.
T Consensus 380 ~l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa 440 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA 440 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecch
Confidence 37788999999999999999998844 46788875 7777777653 5788998833
No 322
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.00 E-value=0.23 Score=44.07 Aligned_cols=99 Identities=21% Similarity=0.241 Sum_probs=65.6
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCe-EEEccc-hHHHHhCCCC----------CCceEEEccCCC---CCCCC--c
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIK-GINYDL-PYVIKNAPSY----------LGIEHVGGDFFE---SVPEA--D 253 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~---~~~~~--D 253 (356)
...+.++|-||+|-|...+..++. +.+. +..+|. ..+++..+++ ++|.++.||-+. ..+++ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 447899999999999999988876 6654 455564 5555554432 689999999765 33333 8
Q ss_pred EEEecccccCCChH--HHHHHHHHHHHhCCCCCEEEEEe
Q 018405 254 TILMKWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 254 ~i~~~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+|+.-..=-..|-. -....++-+.++|||||.+++..
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 88763221111110 02355667788999999998865
No 323
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=92.91 E-value=0.24 Score=37.54 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=46.0
Q ss_pred HhcCchhHHH--hCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHh
Q 018405 34 VELDVFEIIS--KAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYF 107 (356)
Q Consensus 34 ~~lglf~~L~--~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l 107 (356)
.+..++..|. ..+ +++.|..+||..++++ +. .+.+.++.|+..|+|.+...+.+. ...+|+.|..+
T Consensus 26 ~q~~vL~~l~~~~~~-~~~~t~~eL~~~l~~~------~s-tvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~ 96 (109)
T TIGR01889 26 EELLILYYLGKLENN-EGKLTLKEIIKEILIK------QS-ALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSK 96 (109)
T ss_pred HHHHHHHHHHhhhcc-CCcCcHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHH
Confidence 3444555555 111 1589999999999997 77 899999999999999975333232 24566666533
No 324
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.89 E-value=0.039 Score=41.39 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=42.3
Q ss_pred cEEEeccccc----CCChHHHHHHHHHHHHhCCCCCEEEEEeccc-CCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405 253 DTILMKWVLS----SFDDEQSLKLLKNCYKALPDGGKLLNVNVTI-PEVPENSATSREISILDTICLFQVPHGRERTKQE 327 (356)
Q Consensus 253 D~i~~~~vlh----~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 327 (356)
|+|+|..|.- ++.|+-...+++++++.|+|||.+++ |+-. ...... ........-.+ ..-...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~---~~~~~~~~~n~-----~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKA---KRLSEEIRENY-----KSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTT---TTS-HHHHHHH-----HH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHH---hhhhHHHHhHH-----hceEEChHH
Confidence 7777765532 35788899999999999999999888 3211 000000 00000000011 111134567
Q ss_pred HHHHHHH--cCCcceeEEEc
Q 018405 328 YSELAIK--AGFKGVNYEYG 345 (356)
Q Consensus 328 ~~~ll~~--aGf~~~~~~~~ 345 (356)
+.+.|.+ .||+..+....
T Consensus 74 F~~~L~~~evGF~~~e~~~~ 93 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGV 93 (110)
T ss_dssp HHHHHTSTTT---EEEEE--
T ss_pred HHHHHHhcccceEEEEEccc
Confidence 8888877 69998875544
No 325
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=92.82 E-value=0.22 Score=42.72 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=43.4
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
...|..|||+.++++ +. .+.|.|+.|...|++++........+++|+.|..+.
T Consensus 20 ~~IS~~eLA~~L~iS------~~-Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG~~ll 72 (217)
T PRK14165 20 VKISSSEFANHTGTS------SK-TAARILKQLEDEGYITRTIVPRGQLITITEKGLDVL 72 (217)
T ss_pred CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEEcCCceEEEECHHHHHHH
Confidence 368999999999998 77 899999999999999975333346788888887444
No 326
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=92.78 E-value=0.26 Score=37.74 Aligned_cols=56 Identities=18% Similarity=0.378 Sum_probs=45.7
Q ss_pred HHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC-ccee
Q 018405 31 HAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ-RLYS 99 (356)
Q Consensus 31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~-~~y~ 99 (356)
+..++..|.+.+.++ |..|+.+++..+|++ .. -+++.++.|++.|-|.. .+. |.|.
T Consensus 10 r~eLk~rIvElVRe~---GRiTi~ql~~~TGas------R~-Tvk~~lreLVa~G~l~~---~G~~GvF~ 66 (127)
T PF06163_consen 10 REELKARIVELVREH---GRITIKQLVAKTGAS------RN-TVKRYLRELVARGDLYR---HGRSGVFP 66 (127)
T ss_pred HHHHHHHHHHHHHHc---CCccHHHHHHHHCCC------HH-HHHHHHHHHHHcCCeEe---CCCccccc
Confidence 345667788888887 699999999999997 66 89999999999999994 333 5553
No 327
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=92.75 E-value=1.2 Score=35.46 Aligned_cols=62 Identities=15% Similarity=0.143 Sum_probs=45.0
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
++..|...+ ++.|..+||+.++++ +. .+.+.++-|+..|+|++...+.+ -...+|+.|..+.
T Consensus 36 vL~~l~~~~--~~~t~~eLa~~l~~~------~~-tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 100 (144)
T PRK03573 36 TLHNIHQLP--PEQSQIQLAKAIGIE------QP-SLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLI 100 (144)
T ss_pred HHHHHHHcC--CCCCHHHHHHHhCCC------hh-hHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHH
Confidence 455555432 368999999999998 67 89999999999999997532222 2456777776444
No 328
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=92.71 E-value=0.16 Score=33.90 Aligned_cols=35 Identities=9% Similarity=0.231 Sum_probs=31.5
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
++.+..+||+.+|++ +. -+...++-|...|+++++
T Consensus 21 ~~v~~~~iA~~L~vs------~~-tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 21 GPVRTKDIAERLGVS------PP-TVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp SSBBHHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHCCC------hH-HHHHHHHHHHHCCCEEec
Confidence 699999999999997 77 899999999999999964
No 329
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.64 E-value=0.14 Score=47.67 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccC
Q 018405 178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDF 245 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~ 245 (356)
...+..+++.++ .++. +|||+=||.|.++..+++... ++++++. +.+++.|+.+ .+++|+.++.
T Consensus 183 ~~l~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 183 EKLYEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344555666565 4444 899999999999999998654 6888885 7777777543 6788887654
No 330
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=92.58 E-value=0.21 Score=40.64 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=39.2
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
..|+++|-.+ |.+|-+|||+.+|++ .. .+++.|..|...|++.+..
T Consensus 17 v~Vl~aL~~~---~~~tdEeLa~~Lgi~------~~-~VRk~L~~L~e~~Lv~~~r 62 (158)
T TIGR00373 17 GLVLFSLGIK---GEFTDEEISLELGIK------LN-EVRKALYALYDAGLADYKR 62 (158)
T ss_pred HHHHHHHhcc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCceeee
Confidence 4467777755 589999999999997 77 8999999999999998543
No 331
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=92.52 E-value=0.32 Score=43.43 Aligned_cols=66 Identities=24% Similarity=0.260 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCe-EEEccc-hHHHHhCCCC-----CCceEEEccCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIK-GINYDL-PYVIKNAPSY-----LGIEHVGGDFF 246 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~ 246 (356)
.....++.+. ..+.+..+|.--|.|+++..+++.+|... .+++|. |.+++.|++. +|+.++..+|.
T Consensus 11 Ll~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 3466777777 77889999999999999999999998765 999996 8888888653 46777666543
No 332
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=92.48 E-value=0.27 Score=31.27 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=35.2
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+++.|.+. ++.|+.+|++.++++ +. .+.+.|..|...|++..
T Consensus 5 il~~l~~~---~~~s~~~l~~~l~~s------~~-tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 5 ILELLAQQ---GKVSVEELAELLGVS------EM-TIRRDLNKLEEQGLLTR 46 (53)
T ss_pred HHHHHHHc---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE
Confidence 44555554 479999999999997 77 89999999999999994
No 333
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.29 E-value=1.2 Score=40.77 Aligned_cols=93 Identities=24% Similarity=0.172 Sum_probs=64.3
Q ss_pred CCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEcc---CCCCCCC-CcEEEecccccCC
Q 018405 191 FEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGD---FFESVPE-ADTILMKWVLSSF 264 (356)
Q Consensus 191 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D---~~~~~~~-~D~i~~~~vlh~~ 264 (356)
.++..+|+-+|+| .|.++.+++++.- .+++++|. ++-.+.|++...-.++... ..+...+ .|+|+..-.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~---- 238 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG---- 238 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence 5577888888876 6679999999876 99999996 6667777665444555432 2222222 488776544
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 265 DDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
...+....++|++||+++++-...
T Consensus 239 -----~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 239 -----PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -----hhhHHHHHHHHhcCCEEEEECCCC
Confidence 234556677889999999987663
No 334
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=92.17 E-value=0.63 Score=38.76 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=59.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-------CCCceEEEccCCC--CC--CC--CcEEEec
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-------YLGIEHVGGDFFE--SV--PE--ADTILMK 258 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~~--~~--~~--~D~i~~~ 258 (356)
...++||+=+|+|.++.+-+.+... +++.+|. .......++ ..++.+...|... .. .. .|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAA-RVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCc-eEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 4689999999999999998887543 5666664 444433332 2567777777763 11 12 4999985
Q ss_pred ccccCCChHHHHHHHHH--HHHhCCCCCEEEEE
Q 018405 259 WVLSSFDDEQSLKLLKN--CYKALPDGGKLLNV 289 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~--~~~~L~pgG~lii~ 289 (356)
--.+. .--+....+.. -..+|+|+|.+++-
T Consensus 122 PPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E 153 (187)
T COG0742 122 PPYAK-GLLDKELALLLLEENGWLKPGALIVVE 153 (187)
T ss_pred CCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence 55551 11111222322 45679999887773
No 335
>PHA02943 hypothetical protein; Provisional
Probab=92.12 E-value=0.33 Score=38.44 Aligned_cols=44 Identities=9% Similarity=0.113 Sum_probs=36.5
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
.+++.|.. |..|..|||+++|++ .. ..+-.|..|...|.+.+..
T Consensus 15 eILE~Lk~----G~~TtseIAkaLGlS------~~-qa~~~LyvLErEG~VkrV~ 58 (165)
T PHA02943 15 KTLRLLAD----GCKTTSRIANKLGVS------HS-MARNALYQLAKEGMVLKVE 58 (165)
T ss_pred HHHHHHhc----CCccHHHHHHHHCCC------HH-HHHHHHHHHHHcCceEEEe
Confidence 45666633 689999999999997 66 7888999999999999753
No 336
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=0.58 Score=37.11 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=66.6
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~ 252 (356)
.++++.++ -.+.++.+|+|+|.|....+.++.. -...+++++ |..+..++-+ .+..|...|+++ +..+.
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 45566555 4456899999999999887766543 345677886 6655544321 467888888887 55544
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
.++++ .+= .-...+-.+++.-|+.+.+++-+-+-.|+
T Consensus 140 ~~vviF-gae-----s~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIF-GAE-----SVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEe-ehH-----HHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 33322 111 11233445677778888888887665543
No 337
>TIGR00122 birA_repr_reg BirA biotin operon repressor domain. This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.
Probab=92.08 E-value=0.27 Score=33.73 Aligned_cols=53 Identities=9% Similarity=0.214 Sum_probs=40.7
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
+.++..|.+ ++.|..+||+.+|++ .. .+++-++.|.+.|+.... . +..|++.+
T Consensus 3 ~~il~~L~~----~~~~~~eLa~~l~vS------~~-tv~~~l~~L~~~g~~i~~--~-~~g~~l~~ 55 (69)
T TIGR00122 3 LRLLALLAD----NPFSGEKLGEALGMS------RT-AVNKHIQTLREWGVDVLT--V-GKGYRLPP 55 (69)
T ss_pred HHHHHHHHc----CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEEe--c-CCceEecC
Confidence 456777776 488999999999998 77 899999999999996532 2 35566543
No 338
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.04 E-value=0.81 Score=38.02 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=74.3
Q ss_pred CCceEEEEcCCccHHHHHHHH----hCCCCeEEEccch--HHHHhCCCCCCceEEEccCCCC-C-------CCC--cEEE
Q 018405 193 HVKKLVDVGGGLGATLNMIIS----KYPRIKGINYDLP--YVIKNAPSYLGIEHVGGDFFES-V-------PEA--DTIL 256 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~----~~p~~~~~~~D~~--~~~~~a~~~~~v~~~~~D~~~~-~-------~~~--D~i~ 256 (356)
++..|+++|.-.|..+..++. .....+++++|+. ..-..|.+.++|.|++++-.+| . ... -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 578999999988877666554 2234677777742 2223334458999999997764 1 111 6778
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCC
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVP 297 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~ 297 (356)
|-..-|++ +...+.|+-...+|..|-++++-|...++-+
T Consensus 149 ilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 88888877 6688999999999999999999888776543
No 339
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=91.88 E-value=0.44 Score=44.17 Aligned_cols=111 Identities=17% Similarity=0.123 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCC---------------------------------------
Q 018405 178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRI--------------------------------------- 218 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~--------------------------------------- 218 (356)
...+..++.. .++.+...++|==||+|.++++.+-..+++
T Consensus 177 etLAaAil~l-agw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 177 ETLAAAILLL-AGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred HHHHHHHHHH-cCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 3445556553 448888899999999999999988766532
Q ss_pred eEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC-CC-cEEEecccccC-CChH-HHH----HHHHHHHHhCC
Q 018405 219 KGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP-EA-DTILMKWVLSS-FDDE-QSL----KLLKNCYKALP 281 (356)
Q Consensus 219 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~~-D~i~~~~vlh~-~~~~-~~~----~~L~~~~~~L~ 281 (356)
.++++|. +.+++.|+.+ +.|+|.++|+.. ..| +. |+|+++--=-. +.++ ... .+.+.+++.++
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~ 335 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLA 335 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhc
Confidence 2668996 8888887654 569999999887 333 33 88888532111 1222 122 34445555555
Q ss_pred CCCEEEEE
Q 018405 282 DGGKLLNV 289 (356)
Q Consensus 282 pgG~lii~ 289 (356)
.-++.++.
T Consensus 336 ~ws~~v~t 343 (381)
T COG0116 336 GWSRYVFT 343 (381)
T ss_pred CCceEEEE
Confidence 55566664
No 340
>COG4189 Predicted transcriptional regulator [Transcription]
Probab=91.67 E-value=0.35 Score=41.15 Aligned_cols=55 Identities=15% Similarity=0.323 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 26 LPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 26 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
+-++|...++..|++.|... ||+.+.|||+++|++ .. -+..-+..|+..|++..+
T Consensus 16 v~kalaS~vRv~Il~lL~~k---~plNvneiAe~lgLp------qs-t~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 16 VLKALASKVRVAILQLLHRK---GPLNVNEIAEALGLP------QS-TMSANIKVLEKAGLIRTE 70 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCHHHHHHHhCCc------hh-hhhhhHHHHHhcCceeee
Confidence 45778888999999999987 699999999999996 44 677789999999999864
No 341
>KOG2730 consensus Methylase [General function prediction only]
Probab=91.66 E-value=0.19 Score=42.67 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=56.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC--C-C-cEEEeccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP--E-A-DTILMKWV 260 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~--~-~-D~i~~~~v 260 (356)
....|+|.-||.|+.+..++..+|. ++.+|. |.-+..|+.+ +||+|++||+++... + + |.+.+...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFL 171 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeec
Confidence 5678999999999999999998875 555554 5556555543 799999999987211 2 2 44433333
Q ss_pred ccCCCh-HHHHHHHHHHHHhCCCCC
Q 018405 261 LSSFDD-EQSLKLLKNCYKALPDGG 284 (356)
Q Consensus 261 lh~~~~-~~~~~~L~~~~~~L~pgG 284 (356)
---|.- .....-+-.+...++|.|
T Consensus 172 sppwggp~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 172 SPPWGGPSYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCCcchhhhhhhhhhhhcchhH
Confidence 333321 223444444555555553
No 342
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=91.65 E-value=0.27 Score=37.04 Aligned_cols=45 Identities=18% Similarity=0.376 Sum_probs=39.2
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
.+..|+..|... ++.|..+||+.+|++ +. .+.+.++.|...|++.
T Consensus 4 ~D~~il~~L~~~---~~~~~~~la~~l~~s------~~-tv~~~l~~L~~~g~i~ 48 (108)
T smart00344 4 IDRKILEELQKD---ARISLAELAKKVGLS------PS-TVHNRVKRLEEEGVIK 48 (108)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCee
Confidence 356677888775 489999999999997 77 8999999999999998
No 343
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=91.63 E-value=0.35 Score=35.53 Aligned_cols=46 Identities=13% Similarity=0.226 Sum_probs=37.8
Q ss_pred HHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 53 VAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 53 ~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
+.+||+.++++ +. .+.+.++.|...|++.. ..+..|.+|+.+..+.
T Consensus 2 ~~ela~~l~is------~s-tvs~~l~~L~~~glI~r---~~~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNVS------PP-TVTQMLKKLEKDGLVEY---EPYRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCCC------hH-HHHHHHHHHHHCCCEEE---cCCCceEechhHHHHH
Confidence 46899999997 67 89999999999999995 3335789998886544
No 344
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=91.41 E-value=1.2 Score=38.43 Aligned_cols=95 Identities=19% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-----hHHHHhCCCCCCceEEEccCCCCCCC----C--cEEEec
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-----PYVIKNAPSYLGIEHVGGDFFESVPE----A--DTILMK 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~~v~~~~~D~~~~~~~----~--D~i~~~ 258 (356)
+++..+||-+|+++|....++..-. |+--+..++. -+.+..|+++++|--+..|...|..- + |+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa- 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA- 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec-
Confidence 6688999999999999988887743 5544445543 24678888889999999998886431 2 76655
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
.+-+ || +..-+--++..-|++||.++|.
T Consensus 233 Dvaq--pd-q~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 233 DVAQ--PD-QARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred cCCC--ch-hhhhhhhhhhhhhccCCeEEEE
Confidence 2222 33 3444455688899999988884
No 345
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=91.09 E-value=0.55 Score=30.73 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=30.0
Q ss_pred CC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 50 KL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 50 ~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
.. |..+||+.++++ +. .+++.|+.|...|++..
T Consensus 19 ~l~s~~~la~~~~vs------~~-tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 19 KLPSERELAAQLGVS------RT-TVREALSRLEAEGLVQR 52 (60)
T ss_pred cCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE
Confidence 45 899999999997 77 89999999999999985
No 346
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=90.96 E-value=0.32 Score=27.81 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=25.4
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL 87 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l 87 (356)
|+|-.|||..+|+. +. -+.|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~t------~E-TVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGLT------RE-TVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-------HH-HHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCCc------HH-HHHHHHHHHHHcCCC
Confidence 57889999999997 77 899999999999875
No 347
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=90.92 E-value=1.3 Score=32.53 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=51.9
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc------cCCHHHHHHH
Q 018405 258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR------ERTKQEYSEL 331 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~t~~e~~~l 331 (356)
..+|=|++.++..++|+.+...-+ |.+++ .+.|.. ..+ ..+- ...-.+|++. .-.++++.+.
T Consensus 2 mDvLIHYp~~d~~~~l~~La~~t~--~~~if--TfAP~T------~~L-~~m~-~iG~lFP~~dRsp~i~~~~e~~l~~~ 69 (97)
T PF07109_consen 2 MDVLIHYPAEDAAQMLAHLASRTR--GSLIF--TFAPRT------PLL-ALMH-AIGKLFPRPDRSPRIYPHREEDLRRA 69 (97)
T ss_pred cceEeccCHHHHHHHHHHHHHhcc--CcEEE--EECCCC------HHH-HHHH-HHhccCCCCCCCCcEEEeCHHHHHHH
Confidence 345667888999999999998755 67666 222221 011 1110 0111123332 1257899999
Q ss_pred HHHcCCcceeEEEccCcee---EEEEe
Q 018405 332 AIKAGFKGVNYEYGACNLY---VMEFL 355 (356)
Q Consensus 332 l~~aGf~~~~~~~~~~~~~---vi~~~ 355 (356)
++++||++.+......+++ ++|++
T Consensus 70 l~~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 70 LAAAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred HHhCCCeeeecccccCcChHHHHhhcc
Confidence 9999999998877765544 45544
No 348
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=90.50 E-value=0.34 Score=42.48 Aligned_cols=96 Identities=21% Similarity=0.286 Sum_probs=53.6
Q ss_pred CCceEEEEcCCccHHHHHH---HHhC--CCCeEEEccc-h---HHH---------------------------HhCCCC-
Q 018405 193 HVKKLVDVGGGLGATLNMI---ISKY--PRIKGINYDL-P---YVI---------------------------KNAPSY- 235 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l---~~~~--p~~~~~~~D~-~---~~~---------------------------~~a~~~- 235 (356)
-++.|+|+||=.|..+..+ ++.+ ++.++.++|. . ..- +...+.
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 4589999999998766543 3333 4566777772 2 211 111111
Q ss_pred ---CCceEEEccCCCCCCCC---cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 236 ---LGIEHVGGDFFESVPEA---DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 236 ---~~v~~~~~D~~~~~~~~---D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+++.++.|.+.+..|.. .+.++.-=. ++= +.....|+.++..|.|||.+++-|
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~-DlY-esT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDC-DLY-ESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE----SH-HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEec-cch-HHHHHHHHHHHhhcCCCeEEEEeC
Confidence 47899999987744432 332322211 221 447899999999999999999844
No 349
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=90.31 E-value=1.1 Score=32.92 Aligned_cols=44 Identities=7% Similarity=0.105 Sum_probs=36.8
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
.+.|..|||+.+|++ +. -+.|.|+.|...|+|... .+.+.|..+
T Consensus 46 ~~is~~eLa~~~g~s------r~-tVsr~L~~Le~~GlI~r~--~~~~~~~~n 89 (95)
T TIGR01610 46 DRVTATVIAELTGLS------RT-HVSDAIKSLARRRIIFRQ--GMMGIVGVN 89 (95)
T ss_pred CccCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeeee--cCCceeecC
Confidence 389999999999997 77 899999999999999953 223677665
No 350
>PRK10870 transcriptional repressor MprA; Provisional
Probab=90.14 E-value=0.61 Score=38.73 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=46.7
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
..++-.|...+ +++.|..|||+.++++ +. .+.++++-|+..|+|++...+.++ ...+|+.|..+.
T Consensus 58 ~~iL~~L~~~~-~~~it~~eLa~~l~l~------~~-tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~ 125 (176)
T PRK10870 58 FMALITLESQE-NHSIQPSELSCALGSS------RT-NATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFL 125 (176)
T ss_pred HHHHHHHhcCC-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 34455554321 1478999999999997 67 899999999999999975433332 456787776544
No 351
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=90.08 E-value=0.26 Score=38.98 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=61.4
Q ss_pred eEEEccc-hHHHHhCCCC-------CCceEEEccCCC---CCCC-C-cEEEecccccCCCh---------HHHHHHHHHH
Q 018405 219 KGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE---SVPE-A-DTILMKWVLSSFDD---------EQSLKLLKNC 276 (356)
Q Consensus 219 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~~-~-D~i~~~~vlh~~~~---------~~~~~~L~~~ 276 (356)
++.+||+ +..++.++++ +|++++..+-.. ..++ . |+++++. -++|. +.....|+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 4678886 7777766543 578888765544 2444 3 7777653 23332 3467899999
Q ss_pred HHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc--CCHHHHHHHHHHcCCcceeEEEcc
Q 018405 277 YKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE--RTKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 277 ~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
.++|+|||.+.|+-....+ +|.. ....+|.+-|.+..|.+.+..+..
T Consensus 79 l~lL~~gG~i~iv~Y~GH~-----------------------gG~eE~~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHP-----------------------GGKEESEAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STC-----------------------HHHHHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCC-----------------------CCHHHHHHHHHHHHhCCcceEEEEEEEccC
Confidence 9999999999996543322 1211 113455555566778887777664
No 352
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=89.97 E-value=0.6 Score=31.24 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=29.0
Q ss_pred CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 51 LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
.|..+||+.++++ +. .+++.|..|...|+++.
T Consensus 26 ~~~~~la~~~~is------~~-~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGVS------RT-TVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEe
Confidence 4599999999997 77 89999999999999984
No 353
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=89.75 E-value=0.49 Score=46.17 Aligned_cols=67 Identities=13% Similarity=0.206 Sum_probs=52.9
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhhCC
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN 111 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~ 111 (356)
.+..++..|... ++.|..+||+.++++ +. .+.+.++.|.+.|+++.+... ...|.+|+.|+.+..+.
T Consensus 7 ~e~~vL~~L~~~---~~~s~~eLA~~l~l~------~~-tVt~~i~~Le~kGlV~~~~~~-~~~i~LTeeG~~~~~~g 73 (489)
T PRK04172 7 NEKKVLKALKEL---KEATLEELAEKLGLP------PE-AVMRAAEWLEEKGLVKVEERV-EEVYVLTEEGKKYAEEG 73 (489)
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHhCcC------HH-HHHHHHHHHHhCCCEEEEeee-EEEEEECHHHHHHHHhc
Confidence 345566677664 589999999999997 77 899999999999999975322 36799999999665544
No 354
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=89.63 E-value=0.39 Score=35.06 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=40.8
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
++....-|.-.++++ .. ..+..++.|+..|++..........|.+|+.|.-|.
T Consensus 30 ~~~~~Tri~y~aNln------y~-~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fl 82 (95)
T COG3432 30 GGIGITRIIYGANLN------YK-RAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCceeeeeecCcC------HH-HHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHH
Confidence 578888899999997 77 899999999999976642111123799999998443
No 355
>COG4190 Predicted transcriptional regulator [Transcription]
Probab=89.32 E-value=0.56 Score=36.17 Aligned_cols=47 Identities=17% Similarity=0.307 Sum_probs=40.8
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
-.+.|.+.|... +|.|+.|+|+..|-+ .. .+.|-|+.|...|++..+
T Consensus 65 ~nleLl~~Ia~~---~P~Si~ElAe~vgRd------v~-nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 65 RNLELLELIAQE---EPASINELAELVGRD------VK-NVHRTLSTLADLGLIFFE 111 (144)
T ss_pred hHHHHHHHHHhc---CcccHHHHHHHhCcc------hH-HHHHHHHHHHhcCeEEEe
Confidence 456677888876 699999999999997 67 899999999999999964
No 356
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=89.25 E-value=0.62 Score=31.38 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=29.7
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
..+ |..+||+.++++ .. -+++-|+.|.+.|+++..
T Consensus 22 ~~lps~~~la~~~~vs------r~-tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 22 DRLPSERELAERYGVS------RT-TVREALRRLEAEGLIERR 57 (64)
T ss_dssp SBE--HHHHHHHHTS-------HH-HHHHHHHHHHHTTSEEEE
T ss_pred CEeCCHHHHHHHhccC------Cc-HHHHHHHHHHHCCcEEEE
Confidence 467 999999999997 77 899999999999999963
No 357
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.05 E-value=3 Score=39.25 Aligned_cols=100 Identities=21% Similarity=0.189 Sum_probs=62.4
Q ss_pred CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEE---cc-CCC---CC-CC-C-cEEEec
Q 018405 191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVG---GD-FFE---SV-PE-A-DTILMK 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~D-~~~---~~-~~-~-D~i~~~ 258 (356)
..+..+||.+|||. |..+..+++...-.++++++. +...+.+++.....++. .+ +.. .. +. + |+|+-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 55678999999988 889999999876445777774 66666655442223221 11 111 11 11 3 777653
Q ss_pred c---------------cccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 259 W---------------VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 259 ~---------------vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
- +|+-.++ ....++.+.+.++|+|+++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~G~iv~~g~~ 308 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETD--RPDALREAIQAVRKGGTVSIIGVY 308 (386)
T ss_pred CCCcccccccccccccccccccC--chHHHHHHHHHhccCCEEEEEcCC
Confidence 2 1121122 356788899999999999998643
No 358
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=88.96 E-value=0.8 Score=42.91 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=51.7
Q ss_pred CCceEEEccCCC---CCCC-C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 236 LGIEHVGGDFFE---SVPE-A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 236 ~~v~~~~~D~~~---~~~~-~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
++|+++.+++.+ ..|. . |.+++...+..+++++..+.++++.+.++|||+++.-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999998876 2333 3 9999999999999999999999999999999999997766543
No 359
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=88.93 E-value=1.1 Score=31.43 Aligned_cols=49 Identities=8% Similarity=-0.050 Sum_probs=39.7
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
.|+...+||+.++.+ +. -++.-+..|.++|+|+...-+ .+.|..|..+.
T Consensus 22 ~PVgSk~ia~~l~~s------~a-TIRN~M~~Le~lGlve~~p~~-s~GriPT~~aY 70 (78)
T PF03444_consen 22 EPVGSKTIAEELGRS------PA-TIRNEMADLEELGLVESQPHP-SGGRIPTDKAY 70 (78)
T ss_pred CCcCHHHHHHHHCCC------hH-HHHHHHHHHHHCCCccCCCCC-CCCCCcCHHHH
Confidence 599999999999997 77 899999999999999842112 36678887776
No 360
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=88.79 E-value=1.3 Score=38.77 Aligned_cols=85 Identities=18% Similarity=0.149 Sum_probs=65.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCC--CC-cEEEecccccCCChH
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP--EA-DTILMKWVLSSFDDE 267 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~--~~-D~i~~~~vlh~~~~~ 267 (356)
+.+.+.-+|+|+-.|+.+-.|.+ .++.++.+|...+.+.....++|+....|-+.-.| .. |-.+|-.| +
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVk--r~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmVCDmV------E 280 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVK--RNMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMVCDMV------E 280 (358)
T ss_pred hcCCceeeecccCCCccchhhhh--cceEEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEEeehh------c
Confidence 44789999999999999999998 57889999987777777777899999999998444 33 76666544 4
Q ss_pred HHHHHHHHHHHhCCCC
Q 018405 268 QSLKLLKNCYKALPDG 283 (356)
Q Consensus 268 ~~~~~L~~~~~~L~pg 283 (356)
+..++-..+...|..|
T Consensus 281 kP~rv~~li~~Wl~nG 296 (358)
T COG2933 281 KPARVAALIAKWLVNG 296 (358)
T ss_pred CcHHHHHHHHHHHHcc
Confidence 4566666677777654
No 361
>PRK06474 hypothetical protein; Provisional
Probab=88.48 E-value=0.82 Score=38.03 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=50.7
Q ss_pred HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC--C---Ccceecc
Q 018405 28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD--G---QRLYSLA 101 (356)
Q Consensus 28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~--~---~~~y~~t 101 (356)
.+|.--.++.|++.|...+ ++.|+.+|++.+ +++ .. -+.|.|+.|...|+|...... + +..|+++
T Consensus 6 ~~La~p~R~~Il~~L~~~~--~~~ta~el~~~l~~is------~a-TvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~ 76 (178)
T PRK06474 6 EILMHPVRMKICQVLMRNK--EGLTPLELVKILKDVP------QA-TLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAIN 76 (178)
T ss_pred HhhCCHHHHHHHHHHHhCC--CCCCHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCEEEeecccccCceeEEEEec
Confidence 4556667888899997753 249999999998 575 45 789999999999999964321 1 2357777
Q ss_pred hhch
Q 018405 102 SVAK 105 (356)
Q Consensus 102 ~~~~ 105 (356)
+.+.
T Consensus 77 ~~~~ 80 (178)
T PRK06474 77 EEDA 80 (178)
T ss_pred ccee
Confidence 6553
No 362
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=88.39 E-value=1 Score=31.55 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=36.6
Q ss_pred hhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 39 FEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 39 f~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
=|.|... |-.++.+||.+++++ +. .++-+|..|+..|-+++.
T Consensus 8 Rd~l~~~---gr~s~~~Ls~~~~~p------~~-~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 8 RDLLALR---GRMEAAQISQTLNTP------QP-MINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHHc---CcccHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEee
Confidence 3566665 589999999999997 77 999999999999999964
No 363
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=88.03 E-value=1.1 Score=29.00 Aligned_cols=40 Identities=8% Similarity=0.322 Sum_probs=31.7
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCC
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYN 85 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g 85 (356)
.|+..|.+.. ++.|.++||+.++++ .+ -+++-+..|...|
T Consensus 4 ~il~~L~~~~--~~it~~eLa~~l~vS------~r-Ti~~~i~~L~~~~ 43 (55)
T PF08279_consen 4 QILKLLLESK--EPITAKELAEELGVS------RR-TIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHTT--TSBEHHHHHHHCTS-------HH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHcC--CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHCC
Confidence 3556663332 579999999999998 77 8999999999999
No 364
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=87.89 E-value=10 Score=31.15 Aligned_cols=121 Identities=19% Similarity=0.179 Sum_probs=72.8
Q ss_pred EEcCCccHHHHHHHHhCC---CCeEEEccc-hHHHHhCCC---------CCCceEE-EccCCC--C-C--CCC--cEEEe
Q 018405 199 DVGGGLGATLNMIISKYP---RIKGINYDL-PYVIKNAPS---------YLGIEHV-GGDFFE--S-V--PEA--DTILM 257 (356)
Q Consensus 199 DiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~---------~~~v~~~-~~D~~~--~-~--~~~--D~i~~ 257 (356)
=||=|.=.++..|++.++ ++.++.+|. ..+.+.-.. ..++.+. ..|..+ . . ... |.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367777788888999887 445677775 433333321 1334433 335444 1 2 112 98888
Q ss_pred cccccCCC----h-------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHH
Q 018405 258 KWVLSSFD----D-------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQ 326 (356)
Q Consensus 258 ~~vlh~~~----~-------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 326 (356)
++----.. . +=...+|+.+.+.|+++|.+.|.-.. +..++.=
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~---------------------------~~py~~W 134 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD---------------------------GQPYDSW 134 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC---------------------------CCCCccc
Confidence 65432200 1 12457889999999999999883221 1112222
Q ss_pred HHHHHHHHcCCcceeEEEcc
Q 018405 327 EYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 327 e~~~ll~~aGf~~~~~~~~~ 346 (356)
++.++.+++||...+..+..
T Consensus 135 ~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 135 NIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cHHHHHHhcCCEEEEEecCC
Confidence 45678888999999887764
No 365
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=87.70 E-value=0.8 Score=31.07 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=28.1
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
|-|+.|||+.+|++ + +. .+.+.|+.|...|+|..
T Consensus 25 ~Pt~rEIa~~~g~~--S---~~-tv~~~L~~Le~kG~I~r 58 (65)
T PF01726_consen 25 PPTVREIAEALGLK--S---TS-TVQRHLKALERKGYIRR 58 (65)
T ss_dssp ---HHHHHHHHTSS--S---HH-HHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCCC--C---hH-HHHHHHHHHHHCcCccC
Confidence 66999999999995 2 66 89999999999999995
No 366
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=87.67 E-value=1.1 Score=40.43 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=66.6
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCC----C--CCceEEEccCCCC----CCC-CcEEEe
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPS----Y--LGIEHVGGDFFES----VPE-ADTILM 257 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~--~~v~~~~~D~~~~----~~~-~D~i~~ 257 (356)
..+..+|||..++.|.=+..+++... ...++..|. +.-+...+. . .++.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 55778999999999999999999877 567888885 443333322 1 4566665665442 122 266654
Q ss_pred ------cccccCCCh-------HH-------HHHHHHHHHHhC----CCCCEEEEEeccc
Q 018405 258 ------KWVLSSFDD-------EQ-------SLKLLKNCYKAL----PDGGKLLNVNVTI 293 (356)
Q Consensus 258 ------~~vlh~~~~-------~~-------~~~~L~~~~~~L----~pgG~lii~e~~~ 293 (356)
..++..-++ ++ -.++|+++.+.+ +|||+++-.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 122222221 11 347899999999 9999988866543
No 367
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=87.62 E-value=1 Score=43.28 Aligned_cols=68 Identities=12% Similarity=0.190 Sum_probs=54.3
Q ss_pred HHhcCchhHHHhCCCCCC-CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhhCC
Q 018405 33 VVELDVFEIISKAGAGAK-LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN 111 (356)
Q Consensus 33 a~~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~ 111 (356)
+.+..|+..|.+. ++ .+.++||+.+|++ +. .+.+.+..|.+.|+++.+.+. ...|.+|+.|+....+.
T Consensus 3 ~~e~~iL~~l~~~---~~~~~~~~la~~~g~~------~~-~v~~~~~~L~~kg~v~~~~~~-~~~~~LT~eG~~~l~~G 71 (492)
T PLN02853 3 MAEEALLGALSNN---EEISDSGQFAASHGLD------HN-EVVGVIKSLHGFRYVDAQDIK-RETWVLTEEGKKYAAEG 71 (492)
T ss_pred hHHHHHHHHHHhc---CCCCCHHHHHHHcCCC------HH-HHHHHHHHHHhCCCEEEEEEE-EEEEEECHHHHHHHHcC
Confidence 4566677888764 34 7999999999997 77 899999999999999976543 48999999999544444
No 368
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=87.56 E-value=1.1 Score=34.27 Aligned_cols=68 Identities=16% Similarity=0.225 Sum_probs=49.4
Q ss_pred HHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 32 AVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
...+..++..|...+ +.+..+||+.++++ +. .+.++++-|...|++.+...+.+ -.+.+|+.|..+.
T Consensus 21 t~~q~~~L~~l~~~~---~~~~~~la~~l~i~------~~-~vt~~l~~Le~~glv~r~~~~~DrR~~~l~lT~~G~~~~ 90 (126)
T COG1846 21 TPPQYQVLLALYEAG---GITVKELAERLGLD------RS-TVTRLLKRLEDKGLIERLRDPEDRRAVLVRLTEKGRELL 90 (126)
T ss_pred CHHHHHHHHHHHHhC---CCcHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeeecCCccccceeeEEECccHHHHH
Confidence 445666677777752 44449999999997 77 89999999999999997543322 2467787777444
Q ss_pred h
Q 018405 109 R 109 (356)
Q Consensus 109 ~ 109 (356)
.
T Consensus 91 ~ 91 (126)
T COG1846 91 E 91 (126)
T ss_pred H
Confidence 3
No 369
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=87.43 E-value=1.4 Score=33.64 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=37.2
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
+.-|++.|.+.+ ++.|++||.+++ +++ .. -+-|.|+.|+..|++.+.
T Consensus 3 R~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~i~------~~-TVYR~L~~L~~~Gli~~~ 54 (116)
T cd07153 3 RLAILEVLLESD--GHLTAEEIYERLRKKGPSIS------LA-TVYRTLELLEEAGLVREI 54 (116)
T ss_pred HHHHHHHHHhCC--CCCCHHHHHHHHHhcCCCCC------HH-HHHHHHHHHHhCCCEEEE
Confidence 345777887643 589999999998 344 55 789999999999999964
No 370
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=87.07 E-value=1.7 Score=33.53 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCC-CCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIP-LKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
+++...+.+.+=|..-+|+... . |+.-..||...++ ++ +. .|.+-|+.|+..|++.+..
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~---------~----g~~RF~eL~r~i~~Is------~k-~Ls~~Lk~Le~~Glv~R~~ 71 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLF---------D----GPKRFNELRRSIGGIS------PK-MLSRRLKELEEDGLVERVV 71 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHh---------c----CCCcHHHHHHHccccC------HH-HHHHHHHHHHHCCCEEeee
Confidence 4677777787777777665443 3 3889999999998 87 77 9999999999999999753
Q ss_pred eC---CCcceecchhchHhh
Q 018405 92 VD---GQRLYSLASVAKYFV 108 (356)
Q Consensus 92 ~~---~~~~y~~t~~~~~l~ 108 (356)
.. ..-.|++|+.|.-|.
T Consensus 72 ~~~~PprveY~LT~~G~~L~ 91 (120)
T COG1733 72 YPEEPPRVEYRLTEKGRDLL 91 (120)
T ss_pred cCCCCceeEEEEhhhHHHHH
Confidence 21 125699998886444
No 371
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=86.82 E-value=0.84 Score=41.11 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=38.3
Q ss_pred CceEEEEcCCccHH-HHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEc----cCCCCC--C-CC-cEE
Q 018405 194 VKKLVDVGGGLGAT-LNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGG----DFFESV--P-EA-DTI 255 (356)
Q Consensus 194 ~~~vLDiG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~----D~~~~~--~-~~-D~i 255 (356)
..++||||+|.... ..--++. .++++++.|. +..++.|++. ++|+++.. +++... + +. |+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999998743 3333344 4899999996 7777777542 56877644 344421 1 22 999
Q ss_pred EecccccCCCh
Q 018405 256 LMKWVLSSFDD 266 (356)
Q Consensus 256 ~~~~vlh~~~~ 266 (356)
+|+--+|.-.+
T Consensus 182 mCNPPFy~s~~ 192 (299)
T PF05971_consen 182 MCNPPFYSSQE 192 (299)
T ss_dssp EE-----SS--
T ss_pred ecCCccccChh
Confidence 99888887544
No 372
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=86.79 E-value=0.72 Score=34.64 Aligned_cols=44 Identities=11% Similarity=0.265 Sum_probs=33.0
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
-|++.|... |.++-++||+.+|++ +. -++++|..|...|++...
T Consensus 17 ~Il~~L~~~---~~l~de~la~~~~l~------~~-~vRkiL~~L~~~~lv~~~ 60 (105)
T PF02002_consen 17 RILDALLRK---GELTDEDLAKKLGLK------PK-EVRKILYKLYEDGLVSYR 60 (105)
T ss_dssp HHHHHHHHH-----B-HHHHHHTT-S-------HH-HHHHHHHHHHHHSS-EEE
T ss_pred HHHHHHHHc---CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCeEEE
Confidence 357778755 589999999999997 77 999999999999999864
No 373
>PRK05638 threonine synthase; Validated
Probab=86.77 E-value=0.96 Score=43.53 Aligned_cols=62 Identities=18% Similarity=0.314 Sum_probs=47.1
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCC--CCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-CcceecchhchHh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIP--LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSLASVAKYF 107 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~--~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-~~~y~~t~~~~~l 107 (356)
++.|+..|.+ ++.+..||++.++ ++ +. .+.+.|+.|...|+++...+.+ .-.|++|+.+..+
T Consensus 373 r~~IL~~L~~----~~~~~~el~~~l~~~~s------~~-~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~ 437 (442)
T PRK05638 373 KLEILKILSE----REMYGYEIWKALGKPLK------YQ-AVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRL 437 (442)
T ss_pred HHHHHHHHhh----CCccHHHHHHHHcccCC------cc-hHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHH
Confidence 4456667776 5899999999998 65 66 8999999999999998532222 2459999888743
No 374
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=86.68 E-value=1.5 Score=36.62 Aligned_cols=62 Identities=13% Similarity=0.066 Sum_probs=46.4
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++..|... ++.|..+||+.++++ +. -+.++++-|...|+|.+...+++. ...+|+.|..+.
T Consensus 49 ~iL~~L~~~---~~itq~eLa~~l~l~------~s-Tvtr~l~rLE~kGlI~R~~~~~DrR~~~I~LTekG~~l~ 113 (185)
T PRK13777 49 HILWIAYHL---KGASISEIAKFGVMH------VS-TAFNFSKKLEERGYLTFSKKEDDKRNTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHhC---CCcCHHHHHHHHCCC------Hh-hHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 456666665 489999999999997 66 789999999999999975323232 355777776554
No 375
>COG2512 Predicted membrane-associated trancriptional regulator [Transcription]
Probab=86.43 E-value=0.95 Score=39.96 Aligned_cols=49 Identities=20% Similarity=0.372 Sum_probs=40.9
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceee
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFV 92 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~ 92 (356)
+..+.++|.+.| |-.+-+||.+++|++ .. -+.|.|+-|...|++++..+
T Consensus 197 e~~il~~i~~~G--Gri~Q~eL~r~lgls------kt-TvsR~L~~LEk~GlIe~~K~ 245 (258)
T COG2512 197 EKEILDLIRERG--GRITQAELRRALGLS------KT-TVSRILRRLEKRGLIEKEKK 245 (258)
T ss_pred HHHHHHHHHHhC--CEEeHHHHHHhhCCC------hH-HHHHHHHHHHhCCceEEEEe
Confidence 445677787764 679999999999997 56 89999999999999997643
No 376
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.32 E-value=6.2 Score=36.66 Aligned_cols=94 Identities=24% Similarity=0.155 Sum_probs=64.8
Q ss_pred CceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCC--------C-CCCC-CcEEEecccc
Q 018405 194 VKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFF--------E-SVPE-ADTILMKWVL 261 (356)
Q Consensus 194 ~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~--------~-~~~~-~D~i~~~~vl 261 (356)
..+|+=+||| .|.++..+++.+.-.++++.|. +.-++.|++......+.-.-. + .... .|+++=..-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3499999999 5777788888888889999996 888888876422222211111 1 1122 388765544
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
....+..+.++++|||.++++-.....
T Consensus 248 -------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 244788899999999999998876554
No 377
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=85.83 E-value=23 Score=30.87 Aligned_cols=123 Identities=16% Similarity=0.083 Sum_probs=63.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----C-CCceEEEccCCCCCCCC-----cEEEecccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----Y-LGIEHVGGDFFESVPEA-----DTILMKWVL 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~v~~~~~D~~~~~~~~-----D~i~~~~vl 261 (356)
.+++||=||-+--. +.+++-..+..+++++|+ +..++...+ . -.|+.+..|+..+.|+. |+++.--.
T Consensus 44 ~gk~il~lGDDDLt-SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLT-SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT-H-HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcHH-HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 46899999965543 333333445568888886 555444332 1 24889999999987752 99887432
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCH---HHHHHHHHHcCCc
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTK---QEYSELAIKAGFK 338 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~---~e~~~ll~~aGf~ 338 (356)
++.+-..-++.+..++||..|......... +..+. -++++.+.+.||-
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~---------------------------~~~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYFGFTH---------------------------KEASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-T---------------------------TT--HHHHHHHHHHHHTS--E
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEEEEec---------------------------CcCcHHHHHHHHHHHHHCCcC
Confidence 334667899999999998666333322111 11122 2556777788888
Q ss_pred ceeEEEcc
Q 018405 339 GVNYEYGA 346 (356)
Q Consensus 339 ~~~~~~~~ 346 (356)
+.+++|..
T Consensus 173 i~dii~~F 180 (243)
T PF01861_consen 173 ITDIIPDF 180 (243)
T ss_dssp EEEEEEEE
T ss_pred HHHHHhhh
Confidence 88887753
No 378
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=85.52 E-value=2.2 Score=31.13 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=38.4
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+.|+..|.+. ||=.+.-||..++++ .. .++..|+-|...|+|++.
T Consensus 9 ~~~IL~hl~~~---~~Dy~k~ia~~l~~~------~~-~v~~~l~~Le~~GLler~ 54 (92)
T PF10007_consen 9 DLKILQHLKKA---GPDYAKSIARRLKIP------LE-EVREALEKLEEMGLLERV 54 (92)
T ss_pred HHHHHHHHHHH---CCCcHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEEe
Confidence 45567777776 578889999999997 67 899999999999999953
No 379
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=85.44 E-value=1.3 Score=35.83 Aligned_cols=45 Identities=11% Similarity=0.216 Sum_probs=39.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
.+..|.+.|... +..|..+||+++|++ +. .+++=++.|...|++.
T Consensus 10 ~D~~Il~~Lq~d---~R~s~~eiA~~lglS------~~-tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 10 LDRGILEALMEN---ARTPYAELAKQFGVS------PG-TIHVRVEKMKQAGIIT 54 (153)
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCee
Confidence 567788889886 589999999999998 77 8888899999999998
No 380
>PRK10742 putative methyltransferase; Provisional
Probab=85.05 E-value=1.9 Score=37.70 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCc--eEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH
Q 018405 182 EKVLESYKGFEHVK--KLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV 228 (356)
Q Consensus 182 ~~~~~~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 228 (356)
..+++.+. +++.. +|||.=+|+|..+..++.+ +++++.++. |.+
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~v 122 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVV 122 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHH
Confidence 35566665 66655 9999999999999999986 667888885 543
No 381
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=85.02 E-value=1.2 Score=37.79 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=32.4
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+.|++|+|+++|++ .. -.+|.|.+|++.|++..+
T Consensus 172 ~~~Taeela~~~giS------Rv-TaRRYLeyl~~~~~l~a~ 206 (224)
T COG4565 172 QELTAEELAQALGIS------RV-TARRYLEYLVSNGILEAE 206 (224)
T ss_pred CccCHHHHHHHhCcc------HH-HHHHHHHHHHhcCeeeEE
Confidence 589999999999997 77 899999999999999965
No 382
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=84.90 E-value=1.9 Score=38.15 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=49.7
Q ss_pred HHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCE
Q 018405 207 TLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGK 285 (356)
Q Consensus 207 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~ 285 (356)
++..|.++.++.+++++|. +..++.+.+.+-+.-...+ .+...++|+|+++- |-.....+|+++...+++|+.
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCcE
Confidence 3567888889999999996 7777777554444433333 22334459988863 445678999999998888876
Q ss_pred EEEE
Q 018405 286 LLNV 289 (356)
Q Consensus 286 lii~ 289 (356)
+.=+
T Consensus 75 v~Dv 78 (258)
T PF02153_consen 75 VTDV 78 (258)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 5543
No 383
>PF13730 HTH_36: Helix-turn-helix domain
Probab=84.84 E-value=1.4 Score=28.51 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=27.0
Q ss_pred CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405 52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL 87 (356)
Q Consensus 52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l 87 (356)
|.+.||+.+|++ .. -+.+.++.|+..|++
T Consensus 27 S~~~la~~~g~s------~~-Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGVS------RR-TVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCcC------HH-HHHHHHHHHHHCcCC
Confidence 899999999997 77 899999999999986
No 384
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=84.75 E-value=1.1 Score=33.39 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=35.2
Q ss_pred hcCchhHHHh-CCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 35 ELDVFEIISK-AGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 35 ~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
+-.|++.|.. ...+.++++++|+++++++ .. .++..++.|...|+|-
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l~~~------~~-~v~~al~~L~~eG~IY 96 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQLGMS------EN-EVRKALDFLSNEGHIY 96 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHSTS-------HH-HHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHhCcC------HH-HHHHHHHHHHhCCeEe
Confidence 4445555554 1113579999999999997 66 8999999999999997
No 385
>COG1378 Predicted transcriptional regulators [Transcription]
Probab=84.57 E-value=1.7 Score=38.13 Aligned_cols=63 Identities=14% Similarity=0.098 Sum_probs=47.2
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
+..++-+|-.. |+.|+.||++.+|++ .. .+-.+|+.|...|++...+ ..+..|+.-+....+.
T Consensus 18 Ea~vY~aLl~~---g~~tA~eis~~sgvP------~~-kvY~vl~sLe~kG~v~~~~-g~P~~y~av~p~~~i~ 80 (247)
T COG1378 18 EAKVYLALLCL---GEATAKEISEASGVP------RP-KVYDVLRSLEKKGLVEVIE-GRPKKYRAVPPEELIE 80 (247)
T ss_pred HHHHHHHHHHh---CCccHHHHHHHcCCC------ch-hHHHHHHHHHHCCCEEeeC-CCCceEEeCCHHHHHH
Confidence 44455666665 699999999999997 55 7899999999999999642 3357888765554333
No 386
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=84.49 E-value=2.2 Score=36.77 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=41.3
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
.....|||..+|+. +. .+...++-|+..|++.+ .+.++|..|..|.
T Consensus 25 ~v~q~eIA~~lgiT------~Q-aVsehiK~Lv~eG~i~~---~gR~~Y~iTkkG~ 70 (260)
T COG1497 25 RVKQKEIAKKLGIT------LQ-AVSEHIKELVKEGLIEK---EGRGEYEITKKGA 70 (260)
T ss_pred CCCHHHHHHHcCCC------HH-HHHHHHHHHHhccceee---cCCeeEEEehhHH
Confidence 68899999999998 88 99999999999999995 3447999999987
No 387
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=84.34 E-value=1.9 Score=35.55 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=37.9
Q ss_pred CCHHHHHHhC--CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 51 LSVAEIVAQI--PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 51 ~t~~ela~~~--~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
.+.++||+.+ +++ .. -++.-|+.|...|+++ ++++|.|..|..+
T Consensus 40 ~d~~~iak~l~p~is------~~-ev~~sL~~L~~~gli~---k~~~g~y~~t~~~ 85 (171)
T PF14394_consen 40 PDPEWIAKRLRPKIS------AE-EVRDSLEFLEKLGLIK---KDGDGKYVQTDKS 85 (171)
T ss_pred CCHHHHHHHhcCCCC------HH-HHHHHHHHHHHCCCeE---ECCCCcEEEecce
Confidence 3899999999 997 66 8999999999999999 4556899988654
No 388
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=84.18 E-value=2.1 Score=41.32 Aligned_cols=68 Identities=9% Similarity=0.187 Sum_probs=53.0
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhhCC
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN 111 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~ 111 (356)
.+..|+..|.+.. +..+..+||+.+|++ +. .+.+.+..|.+.|+++.+... ...|.+|+.|+....+.
T Consensus 7 ~e~~iL~~l~~~~--~~~~~~~la~~~~~~------~~-~v~~~~~~L~~kg~v~~~~~~-~~~~~LT~eG~~~~~~G 74 (494)
T PTZ00326 7 EENTILSKLESEN--EIVNSLALAESLNID------HQ-KVVGAIKSLESANYITTEMKK-SNTWTLTEEGEDYLKNG 74 (494)
T ss_pred HHHHHHHHHHhcC--CCCCHHHHHHHcCCC------HH-HHHHHHHHHHhCCCEEEEEEE-EEEEEECHHHHHHHHcC
Confidence 4455667776521 378999999999997 77 899999999999999976543 48999999999544444
No 389
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=84.03 E-value=6.4 Score=35.31 Aligned_cols=86 Identities=22% Similarity=0.138 Sum_probs=55.3
Q ss_pred ceEEEEcCC--ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEE-ccC-CCCCCCCcEEEecccccCCChHHH
Q 018405 195 KKLVDVGGG--LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVG-GDF-FESVPEADTILMKWVLSSFDDEQS 269 (356)
Q Consensus 195 ~~vLDiG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~-~D~-~~~~~~~D~i~~~~vlh~~~~~~~ 269 (356)
.+|+=+|.| -|.++..+.++.+...+++.|. ....+.+... ++.... .+. ......+|+|+.+- |-...
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-gv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~~ 77 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-GVIDELTVAGLAEAAAEADLVIVAV-----PIEAT 77 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-CcccccccchhhhhcccCCEEEEec-----cHHHH
Confidence 567778877 4667777777778888899986 5555555433 222221 222 22344459998864 33557
Q ss_pred HHHHHHHHHhCCCCCEE
Q 018405 270 LKLLKNCYKALPDGGKL 286 (356)
Q Consensus 270 ~~~L~~~~~~L~pgG~l 286 (356)
..+++++...|+||..+
T Consensus 78 ~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 78 EEVLKELAPHLKKGAIV 94 (279)
T ss_pred HHHHHHhcccCCCCCEE
Confidence 88999988888887544
No 390
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=83.61 E-value=1.4 Score=36.01 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=40.2
Q ss_pred HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
..+..|+..|.+. +..|..+||+++|++ +. .+.+=++-|...|++.
T Consensus 14 ~~D~~IL~~Lq~d---~R~s~~eiA~~lglS------~~-tv~~Ri~rL~~~GvI~ 59 (164)
T PRK11169 14 RIDRNILNELQKD---GRISNVELSKRVGLS------PT-PCLERVRRLERQGFIQ 59 (164)
T ss_pred HHHHHHHHHhccC---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeE
Confidence 3677888889886 689999999999998 77 8888899999999998
No 391
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.52 E-value=8.6 Score=37.64 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=60.5
Q ss_pred CCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC--------------C--------
Q 018405 193 HVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE--------------S-------- 248 (356)
Q Consensus 193 ~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~--------------~-------- 248 (356)
++.+|+=+|||. |..+...++... .+++++|. +...+.++.. +.+++..|..+ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 578999999995 556666777664 58999995 7777777654 33332211110 1
Q ss_pred ----CCCCcEEEecccccCCChHHHHHH-HHHHHHhCCCCCEEEEEec
Q 018405 249 ----VPEADTILMKWVLSSFDDEQSLKL-LKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 249 ----~~~~D~i~~~~vlh~~~~~~~~~~-L~~~~~~L~pgG~lii~e~ 291 (356)
..+.|+|+..-..-. .....+ .+.+.+.++|||.++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg---~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPG---KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCc---ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 022498887654322 112344 5999999999999888754
No 392
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=83.46 E-value=1.1 Score=28.23 Aligned_cols=41 Identities=10% Similarity=0.189 Sum_probs=22.8
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCc
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNA 86 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~ 86 (356)
.++.+...+.+ +.|..+||+.+|++ +. -+.+|++.....|+
T Consensus 6 ~R~~ii~l~~~-----G~s~~~ia~~lgvs------~~-Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLRE-----GWSIREIAKRLGVS------RS-TVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHH-----T--HHHHHHHHTS-------HH-HHHHHHT-------
T ss_pred HHHHHHHHHHC-----CCCHHHHHHHHCcC------HH-HHHHHHHHcccccc
Confidence 34455666665 68999999999997 77 89999987766663
No 393
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=83.28 E-value=4.6 Score=29.53 Aligned_cols=43 Identities=14% Similarity=0.130 Sum_probs=33.3
Q ss_pred HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHh
Q 018405 29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82 (356)
Q Consensus 29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~ 82 (356)
.-..+.+.||+..|.+ ++.|-.|||+.+|++ .. .+.|+=+.|.
T Consensus 38 ~~~l~~R~~i~~~Ll~----~~~tQrEIa~~lGiS------~a-tIsR~sn~lk 80 (94)
T TIGR01321 38 REDLGDRIRIVNELLN----GNMSQREIASKLGVS------IA-TITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHHHh----CCCCHHHHHHHhCCC------hh-hhhHHHhhcc
Confidence 3445678999998877 489999999999997 55 6677666554
No 394
>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species. The region in question is approximately 150 amino acid residues long.
Probab=83.17 E-value=1.9 Score=33.98 Aligned_cols=46 Identities=11% Similarity=0.192 Sum_probs=37.0
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
|++|.+|||-+.|++ .+ .+-.-|.++++-|-|.+...++.=+|+++
T Consensus 5 Ga~T~eELA~~FGvt------tR-kvaStLa~~ta~Grl~Rv~q~gkfRy~iP 50 (155)
T PF07789_consen 5 GAKTAEELAGKFGVT------TR-KVASTLAMVTATGRLIRVNQNGKFRYCIP 50 (155)
T ss_pred CcccHHHHHHHhCcc------hh-hhHHHHHHHHhcceeEEecCCCceEEeCC
Confidence 799999999999997 77 88899999999999997543333345553
No 395
>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication. ; GO: 0006260 DNA replication, 0006276 plasmid maintenance
Probab=82.97 E-value=1.7 Score=35.67 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=38.2
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
-.|..+||+.+|++ .. -+.|.+..|...+++.+ ...|.|.++|.-
T Consensus 75 ~~t~~~ia~~l~iS------~~-Tv~r~ik~L~e~~iI~k---~~~G~Y~iNP~~ 119 (165)
T PF05732_consen 75 VATQKEIAEKLGIS------KP-TVSRAIKELEEKNIIKK---IRNGAYMINPNF 119 (165)
T ss_pred EeeHHHHHHHhCCC------HH-HHHHHHHHHHhCCcEEE---ccCCeEEECcHH
Confidence 35899999999997 66 79999999999999994 345899998754
No 396
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=82.81 E-value=1.9 Score=41.14 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=36.5
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
.|.|.++|+++++++ +. .++++|+.|...|++. +.+++.|.+.
T Consensus 309 ~~~t~~~La~~l~~~------~~-~v~~iL~~L~~agLI~---~~~~g~~~l~ 351 (412)
T PRK04214 309 KALDVDEIRRLEPMG------YD-ELGELLCELARIGLLR---RGERGQWVLA 351 (412)
T ss_pred CCCCHHHHHHHhCCC------HH-HHHHHHHHHHhCCCeE---ecCCCceEec
Confidence 589999999999997 77 9999999999999998 3434667654
No 397
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=82.69 E-value=2 Score=32.87 Aligned_cols=35 Identities=6% Similarity=0.071 Sum_probs=32.3
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+.|++|||+.+.++ ++ .++.+|+.|...|+|+-.
T Consensus 18 ~~vtl~elA~~l~cS------~R-n~r~lLkkm~~~gWi~W~ 52 (115)
T PF12793_consen 18 VEVTLDELAELLFCS------RR-NARTLLKKMQEEGWITWQ 52 (115)
T ss_pred cceeHHHHHHHhCCC------HH-HHHHHHHHHHHCCCeeee
Confidence 478999999999998 88 999999999999999964
No 398
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=82.64 E-value=1.6 Score=30.25 Aligned_cols=41 Identities=15% Similarity=0.223 Sum_probs=34.6
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
+.|-++||..+|++ +. .+.+.|+.|...|++.. . .+.+...
T Consensus 28 ~lt~~~iA~~~g~s------r~-tv~r~l~~l~~~g~I~~---~-~~~i~I~ 68 (76)
T PF13545_consen 28 PLTQEEIADMLGVS------RE-TVSRILKRLKDEGIIEV---K-RGKIIIL 68 (76)
T ss_dssp ESSHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEE---E-TTEEEES
T ss_pred cCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE---c-CCEEEEC
Confidence 78999999999998 77 89999999999999994 3 2555543
No 399
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=82.54 E-value=1.5 Score=35.69 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=33.4
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG 94 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~ 94 (356)
.|+|++||++++|++ .. .+..-++-|...|++.+..++|
T Consensus 40 ~Pmtl~Ei~E~lg~S------ks-~vS~~lkkL~~~~lV~~~~~~G 78 (177)
T COG1510 40 KPLTLDEIAEALGMS------KS-NVSMGLKKLQDWNLVKKVFEKG 78 (177)
T ss_pred CCccHHHHHHHHCCC------cc-hHHHHHHHHHhcchHHhhhccC
Confidence 599999999999998 55 7888899999999999765444
No 400
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=82.53 E-value=1.9 Score=34.64 Aligned_cols=45 Identities=16% Similarity=0.353 Sum_probs=39.3
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
.+..|.+.|.+. +..|..+||+++|++ +. .+.+-++-|...|++.
T Consensus 9 ~D~~IL~~L~~d---~r~~~~eia~~lglS------~~-~v~~Ri~~L~~~GiI~ 53 (154)
T COG1522 9 IDRRILRLLQED---ARISNAELAERVGLS------PS-TVLRRIKRLEEEGVIK 53 (154)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCcee
Confidence 456678888886 589999999999998 77 8889999999999999
No 401
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=82.46 E-value=2 Score=28.80 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=33.6
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+++.|-.. |..|+.+|++.++++ +. .++.-|-.|.-.|++.+
T Consensus 18 V~~~Ll~~---G~ltl~~i~~~t~l~------~~-~Vk~~L~~LiQh~~v~y 59 (62)
T PF08221_consen 18 VGEVLLSR---GRLTLREIVRRTGLS------PK-QVKKALVVLIQHNLVQY 59 (62)
T ss_dssp HHHHHHHC----SEEHHHHHHHHT--------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHc---CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHcCCeee
Confidence 45666665 689999999999997 77 89999999999999985
No 402
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.40 E-value=7.1 Score=35.48 Aligned_cols=90 Identities=17% Similarity=0.034 Sum_probs=49.2
Q ss_pred CceEEEEcCCc-c-HHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHH
Q 018405 194 VKKLVDVGGGL-G-ATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSL 270 (356)
Q Consensus 194 ~~~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~ 270 (356)
..+|.=||+|. | .++..+.+.....+++++|. +...+.+....-......+..+...++|+|+++-- .....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence 35788899885 3 34444444322246788885 55555544322111111121112234588877643 33456
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 018405 271 KLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 271 ~~L~~~~~~L~pgG~lii 288 (356)
.+++.+...++||..++.
T Consensus 81 ~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 81 AVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred HHHHHHHhhCCCCCEEEe
Confidence 777888888888875544
No 403
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=82.39 E-value=3.7 Score=36.36 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=31.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-----CCCeEEEccch
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-----PRIKGINYDLP 226 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~~ 226 (356)
+.+...++|+|||.|.++..+.... +...++.+|..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~ 56 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRA 56 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecC
Confidence 5677899999999999999999988 56789999963
No 404
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=81.89 E-value=2.2 Score=36.69 Aligned_cols=33 Identities=6% Similarity=0.300 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCC
Q 018405 25 VLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLK 63 (356)
Q Consensus 25 ~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~ 63 (356)
..-.+|+.|.+.|-||. .+ ..++.|||+.+|++
T Consensus 159 rQ~~vL~~A~~~GYFd~-PR-----~~~l~dLA~~lGIS 191 (215)
T COG3413 159 RQLEVLRLAYKMGYFDY-PR-----RVSLKDLAKELGIS 191 (215)
T ss_pred HHHHHHHHHHHcCCCCC-Cc-----cCCHHHHHHHhCCC
Confidence 34578999999999999 44 68999999999998
No 405
>PRK13699 putative methylase; Provisional
Probab=80.89 E-value=6.9 Score=33.91 Aligned_cols=76 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred ceEEEccCCC---CCCCC--cEEEec-------------ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC
Q 018405 238 IEHVGGDFFE---SVPEA--DTILMK-------------WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN 299 (356)
Q Consensus 238 v~~~~~D~~~---~~~~~--D~i~~~-------------~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~ 299 (356)
+++..+|..+ ..|+. |+|+.. ..-.....+-....+++++++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i----------- 70 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS----------- 70 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE-----------
Q ss_pred chhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 300 SATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
.........+...++++||.+...+
T Consensus 71 -------------------f~~~~~~~~~~~al~~~GF~l~~~I 95 (227)
T PRK13699 71 -------------------FYGWNRVDRFMAAWKNAGFSVVGHL 95 (227)
T ss_pred -------------------EeccccHHHHHHHHHHCCCEEeeEE
No 406
>PF13518 HTH_28: Helix-turn-helix domain
Probab=80.44 E-value=2.7 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=26.5
Q ss_pred CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405 51 LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL 87 (356)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l 87 (356)
.|+.++|+.+|++ +. -+.+|++.....|+-
T Consensus 13 ~s~~~~a~~~gis------~~-tv~~w~~~y~~~G~~ 42 (52)
T PF13518_consen 13 ESVREIAREFGIS------RS-TVYRWIKRYREGGIE 42 (52)
T ss_pred CCHHHHHHHHCCC------Hh-HHHHHHHHHHhcCHH
Confidence 4999999999997 77 899999999888853
No 407
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=80.38 E-value=9.5 Score=34.11 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=70.4
Q ss_pred eEEEEcCCccHHHHHHHHhCCCCe-EEEccc-hHHHHhCCCC-CCceEEEccCCC-C----CCCCcEEEecccccCCChH
Q 018405 196 KLVDVGGGLGATLNMIISKYPRIK-GINYDL-PYVIKNAPSY-LGIEHVGGDFFE-S----VPEADTILMKWVLSSFDDE 267 (356)
Q Consensus 196 ~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~----~~~~D~i~~~~vlh~~~~~ 267 (356)
+++|+-||.|.+...+.... .+ +..+|. +..++..+.+ +.. +..+|+.+ . .+..|+++...-...++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-LIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-CccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 69999999999998888753 44 456775 6655554433 222 56677766 2 1223999876655544321
Q ss_pred --------HHHHHHHHHHH---hCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405 268 --------QSLKLLKNCYK---ALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG 336 (356)
Q Consensus 268 --------~~~~~L~~~~~---~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 336 (356)
....++..+.+ .++| +++++|.+..-. . ........+|.+.|++.|
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~~~P--~~~v~ENV~g~~-------------~--------~~~~~~~~~i~~~l~~~G 135 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLL-------------T--------HDNGNTLKVILNTLEELG 135 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHhcCC--CEEEEEcCcchh-------------c--------cCchHHHHHHHHHHHhCC
Confidence 11223333333 3344 566777664311 0 011124678888899999
Q ss_pred CcceeEE
Q 018405 337 FKGVNYE 343 (356)
Q Consensus 337 f~~~~~~ 343 (356)
|.+...+
T Consensus 136 Y~~~~~~ 142 (275)
T cd00315 136 YNVYWKL 142 (275)
T ss_pred cEEEEEE
Confidence 9875443
No 408
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=80.06 E-value=2.3 Score=40.78 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=40.6
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
|...|.. ||.|+.||++.+|++ .. .+.+.|+.| .|+|...++...-+|+++...
T Consensus 5 ~~~~L~~----g~~~~~eL~~~l~~s------q~-~~s~~L~~L--~~~V~~~~~gr~~~Y~l~~~~ 58 (442)
T PRK09775 5 LTTLLLQ----GPLSAAELAARLGVS------QA-TLSRLLAAL--GDQVVRFGKARATRYALLRPL 58 (442)
T ss_pred HHHHHhc----CCCCHHHHHHHhCCC------HH-HHHHHHHHh--hcceeEeccCceEEEEecccc
Confidence 4456665 699999999999998 66 899999999 888886543333567776543
No 409
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=79.04 E-value=18 Score=26.22 Aligned_cols=34 Identities=3% Similarity=0.048 Sum_probs=25.9
Q ss_pred hHHHHHHHHhhCCcccceeeCCCcceecchhchHhhh
Q 018405 73 MLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVR 109 (356)
Q Consensus 73 ~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 109 (356)
.+.=-+..|...|+|+. .+.|.|++|+.|+.+..
T Consensus 56 ri~Wa~~~L~~aGli~~---~~rG~~~iT~~G~~~l~ 89 (92)
T PF14338_consen 56 RIRWARSYLKKAGLIER---PKRGIWRITEKGRKALA 89 (92)
T ss_pred hHHHHHHHHHHCCCccC---CCCCceEECHhHHHHHh
Confidence 34434889999999994 44699999999995443
No 410
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=78.86 E-value=15 Score=31.34 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=57.9
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCC--eEEEccc-hHHHHhCCCC---------------------------------
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRI--KGINYDL-PYVIKNAPSY--------------------------------- 235 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~~--------------------------------- 235 (356)
+.+.++-|-.||+|+++.-+.--+++. .+.+-|. +.+++.|+++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 467899999999999887766555543 3566675 7776666432
Q ss_pred ---------------CCceEEEccCCCCC-------CCC-cEEEec---ccccCCC----hHHHHHHHHHHHHhCCCCCE
Q 018405 236 ---------------LGIEHVGGDFFESV-------PEA-DTILMK---WVLSSFD----DEQSLKLLKNCYKALPDGGK 285 (356)
Q Consensus 236 ---------------~~v~~~~~D~~~~~-------~~~-D~i~~~---~vlh~~~----~~~~~~~L~~~~~~L~pgG~ 285 (356)
.-......|++++. +.+ |+|+.- .-+-+|. .+-..++|..++.+|.+++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV 209 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV 209 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence 01346677888742 222 888762 2233452 34477999999999965666
Q ss_pred EEEEe
Q 018405 286 LLNVN 290 (356)
Q Consensus 286 lii~e 290 (356)
+.+.+
T Consensus 210 V~v~~ 214 (246)
T PF11599_consen 210 VAVSD 214 (246)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66633
No 411
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=78.79 E-value=3 Score=36.79 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=38.4
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
..|.+.|.+. +..++.|||+.+|++ +. -++|-|+.|.+.|++.+
T Consensus 8 ~~Il~~l~~~---~~~~~~ela~~l~vS------~~-TirRdL~~Le~~g~i~r 51 (251)
T PRK13509 8 QILLELLAQL---GFVTVEKVIERLGIS------PA-TARRDINKLDESGKLKK 51 (251)
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 3467788876 589999999999997 77 89999999999999984
No 412
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=77.87 E-value=7.6 Score=37.03 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=58.2
Q ss_pred CCceEEEEcCCccHHHH--HHHHhCCCCeEEEccc-hHHHHhCCCC--C----CceEEEc----cCCCCCC--CC-cEEE
Q 018405 193 HVKKLVDVGGGLGATLN--MIISKYPRIKGINYDL-PYVIKNAPSY--L----GIEHVGG----DFFESVP--EA-DTIL 256 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~--~l~~~~p~~~~~~~D~-~~~~~~a~~~--~----~v~~~~~----D~~~~~~--~~-D~i~ 256 (356)
.+..+.|+|.|.|.-.- .++-+.-.-.++.+|. -.+....... + +-.++.. +-+-|.+ .. |+|+
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEE
Confidence 45678888888665433 3333333345788885 3443333221 1 1111222 2222322 23 9999
Q ss_pred ecccccCCChH-HHHHHHHHH-HHhCCCCCEEEEEecccC
Q 018405 257 MKWVLSSFDDE-QSLKLLKNC-YKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 257 ~~~vlh~~~~~-~~~~~L~~~-~~~L~pgG~lii~e~~~~ 294 (356)
+++++|+.... ....+.++. ++..++|+.++++|....
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence 99999998644 334455544 455689999999987544
No 413
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=77.08 E-value=4.5 Score=37.48 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL 225 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~ 225 (356)
..++..+.++.+...++|||.|.|+++.-+.-.+ ++.+.++|-
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIeg 184 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEG 184 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEecc
Confidence 3455555557788999999999999999877665 678888884
No 414
>PTZ00357 methyltransferase; Provisional
Probab=77.03 E-value=19 Score=36.27 Aligned_cols=91 Identities=20% Similarity=0.149 Sum_probs=54.8
Q ss_pred ceEEEEcCCccHHHHHHHHhCC----CCeEEEcc-chHHH---HhCC-C---C--------CCceEEEccCCC-CCC---
Q 018405 195 KKLVDVGGGLGATLNMIISKYP----RIKGINYD-LPYVI---KNAP-S---Y--------LGIEHVGGDFFE-SVP--- 250 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p----~~~~~~~D-~~~~~---~~a~-~---~--------~~v~~~~~D~~~-~~~--- 250 (356)
..|+-+|+|-|-+....+++.. .+++.+++ .|..+ .... . . ++|+++..|+.+ ..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 4689999999998887776554 45677777 43321 1111 1 1 248999999987 322
Q ss_pred ----------CCcEEEecccccCCChHHHHHHHHHHHHhCCC----CCE
Q 018405 251 ----------EADTILMKWVLSSFDDEQSLKLLKNCYKALPD----GGK 285 (356)
Q Consensus 251 ----------~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~p----gG~ 285 (356)
..|+||+-..-.+=++|-..+.|.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 24888763332222233344666666667765 665
No 415
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=76.94 E-value=4.2 Score=35.85 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCceEEEEcCCccHHHHHHHHhCC--------CCeEEEccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYP--------RIKGINYDL 225 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~ 225 (356)
.+.+|+|+|+|+|.++..++..+. .++++.++.
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~ 58 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEI 58 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-T
T ss_pred cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcC
Confidence 358999999999999999888653 357888885
No 416
>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle. Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.
Probab=76.87 E-value=2.3 Score=29.39 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=33.3
Q ss_pred CCCCHHHHHHhC---CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCccee
Q 018405 49 AKLSVAEIVAQI---PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYS 99 (356)
Q Consensus 49 ~~~t~~ela~~~---~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~ 99 (356)
+..++.++|+.+ +.. + ..+ ++-.++..|.+.|++++. +.+.|.
T Consensus 23 ~~i~l~~ia~~l~~~~~k--~--~~R-RlYDI~NVLealgli~K~---~k~~~~ 68 (71)
T PF02319_consen 23 KSISLNEIADKLISENVK--T--QRR-RLYDIINVLEALGLIEKQ---SKNSYK 68 (71)
T ss_dssp TEEEHHHHHHHCHHHCCH--H--HCH-HHHHHHHHHHHCTSEEEE---ETTEEE
T ss_pred CcccHHHHHHHHcccccc--c--ccc-hhhHHHHHHHHhCceeec---CCCceE
Confidence 589999999999 882 0 155 899999999999999952 235554
No 417
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=76.57 E-value=13 Score=33.21 Aligned_cols=83 Identities=17% Similarity=0.082 Sum_probs=48.0
Q ss_pred eEEEEcCCc--cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHHHH
Q 018405 196 KLVDVGGGL--GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKL 272 (356)
Q Consensus 196 ~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~ 272 (356)
+|.=||+|. |.++..+.+. +.+++++|. +...+.+.....+.....+. +...++|+|+++ .|.+...++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila-----vp~~~~~~~ 73 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA-----LPIGLLLPP 73 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc-----CCHHHHHHH
Confidence 466778773 3455555553 457888885 66666554332222111111 112234988886 344567788
Q ss_pred HHHHHHhCCCCCEE
Q 018405 273 LKNCYKALPDGGKL 286 (356)
Q Consensus 273 L~~~~~~L~pgG~l 286 (356)
++++...++|+..+
T Consensus 74 ~~~l~~~l~~~~ii 87 (279)
T PRK07417 74 SEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHhCCCCcEE
Confidence 89998888876433
No 418
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=76.28 E-value=5.8 Score=32.74 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=32.8
Q ss_pred cEEEecccccCCCh----------HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 253 DTILMKWVLSSFDD----------EQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 253 D~i~~~~vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|+|++++.||+++. +...++++++.++|+|+..+|......
T Consensus 52 DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 52 DLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred eEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 99999999999865 457788888899998887776655443
No 419
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=76.08 E-value=3.1 Score=25.75 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=15.0
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHH
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVL 78 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L 78 (356)
+.|+.+||+.+|++ .. -+.|+|
T Consensus 21 G~si~~IA~~~gvs------r~-TvyR~l 42 (45)
T PF02796_consen 21 GMSIAEIAKQFGVS------RS-TVYRYL 42 (45)
T ss_dssp T--HHHHHHHTTS-------HH-HHHHHH
T ss_pred CCCHHHHHHHHCcC------HH-HHHHHH
Confidence 49999999999997 55 566655
No 420
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=76.06 E-value=3.1 Score=29.03 Aligned_cols=49 Identities=8% Similarity=0.116 Sum_probs=40.1
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+..+++.++.... .+.+..||++.+|.+ ++ .+-..++.|...|++.+.
T Consensus 3 ~~~~~Le~I~rsR~-~Gi~q~~L~~~~~~D------~r-~i~~~~k~L~~~gLI~k~ 51 (75)
T PF04182_consen 3 IQYCLLERIARSRY-NGITQSDLSKLLGID------PR-SIFYRLKKLEKKGLIVKQ 51 (75)
T ss_pred hHHHHHHHHHhcCC-CCEehhHHHHHhCCC------ch-HHHHHHHHHHHCCCEEEE
Confidence 44556777776543 478999999999997 88 999999999999999964
No 421
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=76.02 E-value=4.3 Score=24.75 Aligned_cols=27 Identities=15% Similarity=0.409 Sum_probs=19.9
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCC
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLK 63 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~ 63 (356)
++..|...|.+. +..|..+||+.+|++
T Consensus 4 ~D~~Il~~Lq~d---~r~s~~~la~~lglS 30 (42)
T PF13404_consen 4 LDRKILRLLQED---GRRSYAELAEELGLS 30 (42)
T ss_dssp HHHHHHHHHHH----TTS-HHHHHHHHTS-
T ss_pred HHHHHHHHHHHc---CCccHHHHHHHHCcC
Confidence 345677788776 589999999999997
No 422
>PF08222 HTH_CodY: CodY helix-turn-helix domain; InterPro: IPR013198 This family consists of the C-terminal helix-turn-helix domain found in several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; PDB: 2B0L_C.
Probab=75.89 E-value=2.9 Score=27.19 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=28.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
|-.+...||.+.|+. .. .+-.-||-|.+.|+++..
T Consensus 3 g~lvas~iAd~~GiT------RS-vIVNALRKleSaGvIesr 37 (61)
T PF08222_consen 3 GRLVASKIADRVGIT------RS-VIVNALRKLESAGVIESR 37 (61)
T ss_dssp EEE-HHHHHHHHT--------HH-HHHHHHHHHHHTTSEEEE
T ss_pred ceehHHHHHHHhCcc------HH-HHHHHHHHHHhcCceeec
Confidence 467899999999997 66 888999999999999964
No 423
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=75.71 E-value=3.9 Score=36.07 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=38.8
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|.+.|.+. +..++.|||+.++++ +. -++|-|..|...|++.+
T Consensus 7 ~~~Il~~l~~~---~~~~~~ela~~l~vS------~~-TiRRdL~~Le~~g~l~r 51 (252)
T PRK10906 7 HDAIIELVKQQ---GYVSTEELVEHFSVS------PQ-TIRRDLNDLAEQNKILR 51 (252)
T ss_pred HHHHHHHHHHc---CCEeHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEE
Confidence 34567788776 589999999999997 77 89999999999999984
No 424
>PRK00215 LexA repressor; Validated
Probab=75.55 E-value=4.7 Score=34.26 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=31.2
Q ss_pred CCCCHHHHHHhCCC-CCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 49 AKLSVAEIVAQIPL-KDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 49 ~~~t~~ela~~~~~-~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+.|..|||+++|+ + +. .+.++|+.|...|++++.
T Consensus 22 ~~~s~~ela~~~~~~~------~~-tv~~~l~~L~~~g~i~~~ 57 (205)
T PRK00215 22 YPPSRREIADALGLRS------PS-AVHEHLKALERKGFIRRD 57 (205)
T ss_pred CCCCHHHHHHHhCCCC------hH-HHHHHHHHHHHCCCEEeC
Confidence 37899999999999 6 66 899999999999999954
No 425
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=75.44 E-value=19 Score=32.63 Aligned_cols=87 Identities=20% Similarity=0.151 Sum_probs=52.2
Q ss_pred CCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCC-cEEEecccccCCChHHH
Q 018405 193 HVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEA-DTILMKWVLSSFDDEQS 269 (356)
Q Consensus 193 ~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~-D~i~~~~vlh~~~~~~~ 269 (356)
+..++|=+|+| .|.++..+++...-..++++|. +..++.+.... ..|..+....+ |+|+-.-. .
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~-----~i~~~~~~~~g~Dvvid~~G-----~--- 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE-----VLDPEKDPRRDYRAIYDASG-----D--- 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc-----ccChhhccCCCCCEEEECCC-----C---
Confidence 34678888865 6778888888765444666674 55555554321 11111111223 77765322 1
Q ss_pred HHHHHHHHHhCCCCCEEEEEecc
Q 018405 270 LKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 270 ~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
...+..+.+.|+|+|+++++-..
T Consensus 211 ~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 211 PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred HHHHHHHHHhhhcCcEEEEEeec
Confidence 34677888899999999987653
No 426
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=75.28 E-value=5 Score=34.74 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=37.8
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.|++.|... +|-.+..+||+++|++ +. .+++=++.|.+.|+++..
T Consensus 187 ~IL~~L~~~--egrlse~eLAerlGVS------Rs-~ireAlrkLE~aGvIe~r 231 (251)
T TIGR02787 187 HIFEELDGN--EGLLVASKIADRVGIT------RS-VIVNALRKLESAGVIESR 231 (251)
T ss_pred HHHHHhccc--cccccHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEec
Confidence 467777662 1589999999999998 77 899999999999999963
No 427
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=75.11 E-value=2.9 Score=39.41 Aligned_cols=90 Identities=17% Similarity=0.088 Sum_probs=52.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEcc-chHHHHhCCCC-------CCceEEEccCCC--CCCC--CcEEEeccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYD-LPYVIKNAPSY-------LGIEHVGGDFFE--SVPE--ADTILMKWV 260 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D-~~~~~~~a~~~-------~~v~~~~~D~~~--~~~~--~D~i~~~~v 260 (356)
+...|||||.|||.++...+++..+ .++.++ ...+.+.|++. ++|.++..--.+ ..|. +|+++...+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4468999999999999887777644 477777 45565555432 456655432222 1222 366655444
Q ss_pred ccCCChHHHHHHHHHHHHhC-CCC
Q 018405 261 LSSFDDEQSLKLLKNCYKAL-PDG 283 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L-~pg 283 (356)
.-.+.-+-+...++.+.+.| +||
T Consensus 145 dtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred hhhhhccccchhHHHHHHHhcccC
Confidence 44333333445566666555 344
No 428
>PF14502 HTH_41: Helix-turn-helix domain
Probab=74.96 E-value=6.7 Score=24.67 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
-.|++|++++++++ .- -++.-|..|...|.+..+.
T Consensus 6 i~tI~e~~~~~~vs------~G-tiQ~Alk~Le~~gaI~Le~ 40 (48)
T PF14502_consen 6 IPTISEYSEKFGVS------RG-TIQNALKFLEENGAIKLES 40 (48)
T ss_pred cCCHHHHHHHhCcc------hh-HHHHHHHHHHHCCcEEeee
Confidence 46999999999997 67 8999999999999999654
No 429
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=74.24 E-value=9 Score=30.65 Aligned_cols=56 Identities=7% Similarity=0.126 Sum_probs=39.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhh-------hHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAM-------MLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~-------~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
||..+..|++.+|...++-..|.+ .++..|+.|..+|+++.+ ..|+ .+|+.|..+.
T Consensus 66 gpvGV~~L~~~yGg~k~~G~~P~h~~~~sg~iiR~~LqqLE~~glVek~---~~GR-~lT~~G~~~L 128 (150)
T PRK09333 66 GPVGVERLRTAYGGRKNRGVRPEHFVKGSGSIIRKILQQLEKAGLVEKT---KKGR-VITPKGRSLL 128 (150)
T ss_pred CCccHHHHHHHHCCCcCCCCCCCccccCccHHHHHHHHHHHHCCCeeeC---CCCC-EeCHHHHHHH
Confidence 599999999999984322111111 489999999999999953 2355 6888886444
No 430
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=74.13 E-value=3.6 Score=28.76 Aligned_cols=35 Identities=11% Similarity=0.283 Sum_probs=23.0
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHh
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~ 82 (356)
++..|.++ .|.|+++||.++|.+ .. .++..|..+-
T Consensus 29 LLr~LA~G---~PVt~~~LA~a~g~~------~e-~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKG---QPVTVEQLAAALGWP------VE-EVRAALAAMP 63 (77)
T ss_dssp HHHHHTTT---S-B-HHHHHHHHT--------HH-HHHHHHHH-T
T ss_pred HHHHHHcC---CCcCHHHHHHHHCCC------HH-HHHHHHHhCC
Confidence 67888885 699999999999995 44 5666665554
No 431
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=74.12 E-value=6.2 Score=34.52 Aligned_cols=44 Identities=11% Similarity=0.221 Sum_probs=37.8
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
..|.+.|.+. +..++.|||+.++++ +. -++|-|..|...|.+.+
T Consensus 7 ~~Il~~l~~~---~~~~~~eLa~~l~VS------~~-TiRRdL~~L~~~~~l~r 50 (240)
T PRK10411 7 QAIVDLLLNH---TSLTTEALAEQLNVS------KE-TIRRDLNELQTQGKILR 50 (240)
T ss_pred HHHHHHHHHc---CCCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 3467777775 589999999999997 77 89999999999999984
No 432
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=73.91 E-value=5.9 Score=35.33 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCCHHHHHHhCC--CCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 50 KLSVAEIVAQIP--LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 50 ~~t~~ela~~~~--~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
..++++||+.++ ++ .. -++.-|+.|+..|+++ ++++|.|..|..+
T Consensus 137 ~~~~~~ia~~l~p~is------~~-ev~~sL~~L~~~glik---k~~~g~y~~t~~~ 183 (271)
T TIGR02147 137 ADDPEELAKRCFPKIS------AE-QVKESLDLLERLGLIK---KNEDGFYKQTDKA 183 (271)
T ss_pred CCCHHHHHHHhCCCCC------HH-HHHHHHHHHHHCCCee---ECCCCcEEeecce
Confidence 448899999998 54 55 7899999999999999 4557899988654
No 433
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=73.73 E-value=21 Score=33.55 Aligned_cols=91 Identities=14% Similarity=0.047 Sum_probs=57.2
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCeEEEccc--hH--HHHhCCCCCCc---eEEEccCCCCCCCC-cEEEecccccCCCh
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIKGINYDL--PY--VIKNAPSYLGI---EHVGGDFFESVPEA-DTILMKWVLSSFDD 266 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~--~~~~a~~~~~v---~~~~~D~~~~~~~~-D~i~~~~vlh~~~~ 266 (356)
.+||-|+-.-|.+++.++...|. ...|. .. ....+.. .++ .+...+..++.|++ |+|++..-= +-
T Consensus 46 ~~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~-n~~~~~~~~~~~~~~~~~~~~d~vl~~~PK---~~ 118 (378)
T PRK15001 46 GPVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRL-NGIDESSVKFLDSTADYPQQPGVVLIKVPK---TL 118 (378)
T ss_pred CCEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHH-cCCCcccceeecccccccCCCCEEEEEeCC---CH
Confidence 38999999999999999975553 33552 11 1111111 222 13333444556665 888764221 12
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 267 EQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 267 ~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
+.....|..+...|+||+.+++.+..
T Consensus 119 ~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 119 ALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 35778899999999999998876654
No 434
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=73.40 E-value=8.1 Score=26.66 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=34.9
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
|...|+. +..|.+||-+.+|++ .. -+...|.-|...|++++.
T Consensus 10 IL~~ls~----~c~TLeeL~ekTgi~------k~-~LlV~LsrL~k~GiI~Rk 51 (72)
T PF05584_consen 10 ILIILSK----RCCTLEELEEKTGIS------KN-TLLVYLSRLAKRGIIERK 51 (72)
T ss_pred HHHHHHh----ccCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeeee
Confidence 4445565 489999999999997 66 788899999999999953
No 435
>PRK09954 putative kinase; Provisional
Probab=73.28 E-value=5.4 Score=37.17 Aligned_cols=43 Identities=9% Similarity=0.207 Sum_probs=37.7
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
..|++.|.+. +..|..|||+.++++ +. .+.+.++.|...|++.
T Consensus 6 ~~il~~l~~~---~~~s~~~la~~l~~s------~~-~v~~~i~~L~~~g~i~ 48 (362)
T PRK09954 6 KEILAILRRN---PLIQQNEIADILQIS------RS-RVAAHIMDLMRKGRIK 48 (362)
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCcC
Confidence 3477788776 489999999999997 77 8999999999999997
No 436
>PRK01381 Trp operon repressor; Provisional
Probab=73.19 E-value=8.5 Score=28.39 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=26.0
Q ss_pred HHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCC
Q 018405 30 MHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLK 63 (356)
Q Consensus 30 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~ 63 (356)
-..+.+++|+..|.+ |..|-.|||+.+|++
T Consensus 39 ~al~~R~~I~~~L~~----g~~sQREIa~~lGvS 68 (99)
T PRK01381 39 EALGTRVRIVEELLR----GELSQREIKQELGVG 68 (99)
T ss_pred HHHHHHHHHHHHHHc----CCcCHHHHHHHhCCc
Confidence 345688999999988 589999999999996
No 437
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=72.85 E-value=6 Score=31.71 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=35.5
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
.-|+++|-.+ +.+|-++||+.+|++ .. .++++|..|...+++.
T Consensus 4 ~~v~d~L~~~---~~~~dedLa~~l~i~------~n-~vRkiL~~L~ed~~~~ 46 (147)
T smart00531 4 FLVLDALMRN---GCVTEEDLAELLGIK------QK-QLRKILYLLYDEKLIK 46 (147)
T ss_pred EeehHHHHhc---CCcCHHHHHHHhCCC------HH-HHHHHHHHHHhhhcch
Confidence 3467877665 589999999999997 77 9999999999955544
No 438
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=72.84 E-value=40 Score=25.73 Aligned_cols=85 Identities=20% Similarity=0.160 Sum_probs=54.6
Q ss_pred CCceEEEEcCCccH-HHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCC----CCCcEEEecccccCCChH
Q 018405 193 HVKKLVDVGGGLGA-TLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESV----PEADTILMKWVLSSFDDE 267 (356)
Q Consensus 193 ~~~~vLDiG~G~G~-~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~----~~~D~i~~~~vlh~~~~~ 267 (356)
..++|++||-|-=. .+..|+++ ++.++..|..+. .+. ..++++.-|+++|. ..+|+|.+... .+
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~--~a~--~g~~~v~DDitnP~~~iY~~A~lIYSiRp-----pp 81 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK--TAP--EGLRFVVDDITNPNISIYEGADLIYSIRP-----PP 81 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc--cCc--ccceEEEccCCCccHHHhhCccceeecCC-----CH
Confidence 45699999998765 44445443 367888886332 332 67999999999863 23488887543 34
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEe
Q 018405 268 QSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 268 ~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+....+=++.++++ ..++|.-
T Consensus 82 El~~~ildva~aVg--a~l~I~p 102 (129)
T COG1255 82 ELQSAILDVAKAVG--APLYIKP 102 (129)
T ss_pred HHHHHHHHHHHhhC--CCEEEEe
Confidence 45666666666655 4555543
No 439
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.72 E-value=24 Score=32.22 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=64.0
Q ss_pred CCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEE---c-----cCCC----CCCC--CcE
Q 018405 191 FEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVG---G-----DFFE----SVPE--ADT 254 (356)
Q Consensus 191 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~---~-----D~~~----~~~~--~D~ 254 (356)
++...+||-+|+| .|..+...++.+.-.++++.|. +.-++.|++. +.+.+. . ++.+ -... .|+
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~ 245 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSSHKSSPQELAELVEKALGKKQPDV 245 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCeEEeeccccccHHHHHHHHHhhccccCCCe
Confidence 6778999999999 5778888888888889999996 8778888763 111111 1 1111 0111 276
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
.+-...+ ...++.+..++++||.++++....+
T Consensus 246 ~~dCsG~--------~~~~~aai~a~r~gGt~vlvg~g~~ 277 (354)
T KOG0024|consen 246 TFDCSGA--------EVTIRAAIKATRSGGTVVLVGMGAE 277 (354)
T ss_pred EEEccCc--------hHHHHHHHHHhccCCEEEEeccCCC
Confidence 6665554 3455566778999999888886544
No 440
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=72.52 E-value=17 Score=29.34 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=39.1
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
.|+++.||+..++.+ + -. .+..-|+.|...|+++..+...+-+|..|+.|.
T Consensus 97 R~K~laDic~~ln~e--D---th-~itYslrKL~k~gLit~t~~gkevTy~vTa~G~ 147 (199)
T COG5631 97 RPKSLADICQMLNRE--D---TH-NITYSLRKLLKGGLITRTGSGKEVTYEVTALGH 147 (199)
T ss_pred chhhHHHHHHHhccc--c---ch-hHHHHHHHHHhccceecCCCCceEEEEEecchH
Confidence 599999999999996 2 33 777889999999999953211235788888875
No 441
>PF11972 HTH_13: HTH DNA binding domain; InterPro: IPR021068 The proteins in this entry have not been characterised. They contain a C-terminal helix-turn-helix DNA binding domain.
Probab=72.04 E-value=9.2 Score=24.74 Aligned_cols=47 Identities=9% Similarity=0.226 Sum_probs=33.3
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
+.|.|-..| -.|+..+++.++++ +. ...++++- +|+-+ .++.++|+.
T Consensus 4 Lidll~~~P---~Vsa~mva~~L~vT------~~-~A~~li~e---Lg~rE---iTGr~R~Ra 50 (54)
T PF11972_consen 4 LIDLLLSRP---LVSAPMVAKELGVT------PQ-AAQRLIAE---LGLRE---ITGRGRYRA 50 (54)
T ss_pred HHHHHHhCc---cccHHHHHHHhCCC------HH-HHHHHHHH---hhcee---ecCCcccch
Confidence 566676654 68999999999997 77 77776644 55522 456677763
No 442
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=71.78 E-value=4.8 Score=35.59 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=39.1
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|.+.|.+. +..++.|||+.++++ +. -+||=|+.|...|++.+
T Consensus 7 ~~~Il~~L~~~---~~v~v~eLa~~l~VS------~~-TIRRDL~~Le~~g~l~r 51 (256)
T PRK10434 7 QAAILEYLQKQ---GKTSVEELAQYFDTT------GT-TIRKDLVILEHAGTVIR 51 (256)
T ss_pred HHHHHHHHHHc---CCEEHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE
Confidence 44577888886 589999999999997 67 89999999999999994
No 443
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=71.69 E-value=6.6 Score=30.43 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=34.0
Q ss_pred CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 51 LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
-|+.++|..++++ |. -++|-.+.|...|++... .+.|.|-.
T Consensus 36 PSvRelA~~~~VN------pn-Tv~raY~eLE~eG~i~t~--rg~G~fV~ 76 (125)
T COG1725 36 PSVRELAKDLGVN------PN-TVQRAYQELEREGIVETK--RGKGTFVT 76 (125)
T ss_pred CcHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe--cCeeEEEc
Confidence 3899999999997 77 899999999999999963 33466643
No 444
>PF07848 PaaX: PaaX-like protein; InterPro: IPR012906 This entry describes the N-terminal region of proteins that are similar to, and nclude, the product of the paaX gene of Escherichia coli (P76086 from SWISSPROT). PaaX is a transcriptional regulator that is always found in association with operons believed to be involved in the degradation of phenylacetic acid []. The gene product has been shown to bind to the promoter sites and repress their transcription []. ; PDB: 3KFW_X 3L09_B.
Probab=71.65 E-value=4.3 Score=27.98 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=31.9
Q ss_pred CCCCHHHH---HHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 49 AKLSVAEI---VAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 49 ~~~t~~el---a~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
+++++.+| .+.+|++ +. .++.-|.=|+..|+|+.+.......|++|+.+
T Consensus 19 ~~i~~~~Li~ll~~~Gv~------e~-avR~alsRl~~~G~L~~~r~Gr~~~Y~Lt~~g 70 (70)
T PF07848_consen 19 GWIWVASLIRLLAAFGVS------ES-AVRTALSRLVRRGWLESERRGRRSYYRLTERG 70 (70)
T ss_dssp S-EEHHHHHHHHCCTT--------HH-HHHHHHHHHHHTTSEEEECCCTEEEEEE-HHH
T ss_pred CceeHHHHHHHHHHcCCC------hH-HHHHHHHHHHHcCceeeeecCccceEeeCCCC
Confidence 45555554 5567886 77 88888999999999997533223479988753
No 445
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=71.43 E-value=3.9 Score=28.39 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=28.5
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
..|..|||+.+|++ +. .++.++..+...|.+.
T Consensus 32 GlS~kEIAe~LGIS------~~-TVk~~l~~~~~~~~~~ 63 (73)
T TIGR03879 32 GKTASEIAEELGRT------EQ-TVRNHLKGETKAGGLV 63 (73)
T ss_pred CCCHHHHHHHHCcC------HH-HHHHHHhcCcccchHH
Confidence 68999999999998 77 8999999888888776
No 446
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=71.43 E-value=13 Score=29.66 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=52.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCCC-----CcEEE
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVPE-----ADTIL 256 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~~-----~D~i~ 256 (356)
...+.... .-.+-|+|+|=|.|..=-++.+.+|+-++.++|..-.+.-...-+.-.++.||+.+..+. ..+.+
T Consensus 19 ~~a~~~v~--~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~l 96 (160)
T PF12692_consen 19 NWAAAQVA--GLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAAL 96 (160)
T ss_dssp HHHHHHTT--T--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEE
T ss_pred HHHHHHhc--CCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEE
Confidence 34444444 234789999999999999999999999999999532211111113446788887762211 13333
Q ss_pred ecccccCCChHHHHHHHH----HHHHhCCCCCEEEEEeccc
Q 018405 257 MKWVLSSFDDEQSLKLLK----NCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~----~~~~~L~pgG~lii~e~~~ 293 (356)
...=+-.-..++-..... -+..+|.|||.++--.+..
T Consensus 97 aHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 97 AHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp EEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred EEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 332222222232233333 3445678888887754443
No 447
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=71.35 E-value=6.4 Score=32.48 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=38.4
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.-++++|.+. |-.|=++||..+|+. .. -++++|.+|...|++.+.
T Consensus 21 ~~v~~~l~~k---ge~tDeela~~l~i~------~~-~vrriL~~L~e~~li~~~ 65 (176)
T COG1675 21 VLVVDALLEK---GELTDEELAELLGIK------KN-EVRRILYALYEDGLISYR 65 (176)
T ss_pred hHHHHHHHhc---CCcChHHHHHHhCcc------HH-HHHHHHHHHHhCCceEEE
Confidence 4467777775 468999999999997 77 899999999999999964
No 448
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=71.21 E-value=6.9 Score=33.67 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 48 GAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
|..++..+||+.+|++ .. -++.-|+.|...|+|+..
T Consensus 28 G~~L~e~eLae~lgVS------Rt-pVREAL~~L~~eGlv~~~ 63 (224)
T PRK11534 28 DEKLRMSLLTSRYALG------VG-PLREALSQLVAERLVTVV 63 (224)
T ss_pred CCcCCHHHHHHHHCCC------hH-HHHHHHHHHHHCCCEEEe
Confidence 3588999999999998 66 899999999999999964
No 449
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=71.21 E-value=6.2 Score=33.57 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=31.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
..++-.+||+.+|++ .. -++.-|+.|...|+|+..
T Consensus 33 ~~L~e~~La~~lgVS------Rt-pVReAL~~L~~eGlv~~~ 67 (212)
T TIGR03338 33 AKLNESDIAARLGVS------RG-PVREAFRALEEAGLVRNE 67 (212)
T ss_pred CEecHHHHHHHhCCC------hH-HHHHHHHHHHHCCCEEEe
Confidence 578999999999998 66 899999999999999963
No 450
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional
Probab=70.35 E-value=6.7 Score=35.93 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=40.9
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
..|.+.|.+. .+.+..+||+++|++ +. .+.+.++.|...|+..+. .. ...|++.+.
T Consensus 7 ~~il~~L~~~---~~~s~~~LA~~lgvs------r~-tV~~~l~~L~~~G~~i~~-~~-~~Gy~L~~~ 62 (319)
T PRK11886 7 LQLLSLLADG---DFHSGEQLGEELGIS------RA-AIWKHIQTLEEWGLDIFS-VK-GKGYRLAEP 62 (319)
T ss_pred HHHHHHHHcC---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCceEE-ec-CCeEEecCc
Confidence 3456666653 478999999999997 77 899999999999994422 12 235776543
No 451
>PRK12423 LexA repressor; Provisional
Probab=69.93 E-value=6.1 Score=33.53 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=29.6
Q ss_pred CCCHHHHHHhCCC-CCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 50 KLSVAEIVAQIPL-KDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 50 ~~t~~ela~~~~~-~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
+-|..|||+++|+ + +. .+++.|+.|...|+++..
T Consensus 25 ~Ps~~eia~~~g~~s------~~-~v~~~l~~L~~~G~l~~~ 59 (202)
T PRK12423 25 PPSLAEIAQAFGFAS------RS-VARKHVQALAEAGLIEVV 59 (202)
T ss_pred CCCHHHHHHHhCCCC------hH-HHHHHHHHHHHCCCEEec
Confidence 4599999999996 4 66 789999999999999953
No 452
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=69.68 E-value=8.7 Score=29.78 Aligned_cols=87 Identities=22% Similarity=0.250 Sum_probs=44.1
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCC----CCcEEEecccccCCChH
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVP----EADTILMKWVLSSFDDE 267 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~----~~D~i~~~~vlh~~~~~ 267 (356)
+..+|+|||-|.=.-....++.. +..++..|. +. .+. .++.++.-|+++|.. .+|+|.+.+.= .
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYSiRPP-----~ 81 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYSIRPP-----P 81 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------T
T ss_pred CCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEEeCCC-----h
Confidence 45699999999775444444433 378888885 44 222 689999999999643 34999886652 3
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 268 QSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 268 ~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
+....+-++.+... .-++|.-..
T Consensus 82 El~~~il~lA~~v~--adlii~pL~ 104 (127)
T PF03686_consen 82 ELQPPILELAKKVG--ADLIIRPLG 104 (127)
T ss_dssp TSHHHHHHHHHHHT---EEEEE-BT
T ss_pred HHhHHHHHHHHHhC--CCEEEECCC
Confidence 34555555665543 566664443
No 453
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=69.63 E-value=33 Score=31.49 Aligned_cols=95 Identities=16% Similarity=0.152 Sum_probs=59.8
Q ss_pred CCCCCceEEEEcC--CccHHHHHHHHhCCCCeEEEccchHHHHhCCCCC---CceEEEccCCCC----CC-CC-cEEEec
Q 018405 190 GFEHVKKLVDVGG--GLGATLNMIISKYPRIKGINYDLPYVIKNAPSYL---GIEHVGGDFFES----VP-EA-DTILMK 258 (356)
Q Consensus 190 ~~~~~~~vLDiG~--G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~---~v~~~~~D~~~~----~~-~~-D~i~~~ 258 (356)
++++..+||=.|+ |.|.++.+|+++.-...++....++-.+.+++.. -+.+...|+.+. .. .+ |+|+-.
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~ 218 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDT 218 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEEC
Confidence 3777889999984 6778999999988653344444333333333321 234445554432 12 23 888764
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
-- ...+.+..+.|+++|+++.+....
T Consensus 219 vG---------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 219 VG---------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence 22 456667888999999999987765
No 454
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=69.53 E-value=5.7 Score=40.47 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=57.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhC-------C-----CCeEEEccc-h---HHHHhCC----------------------C
Q 018405 193 HVKKLVDVGGGLGATLNMIISKY-------P-----RIKGINYDL-P---YVIKNAP----------------------S 234 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~----------------------~ 234 (356)
+.-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999998666655444 3 467888873 3 1111110 0
Q ss_pred -------CCC--ceEEEccCCCC---CC-CCcEEEeccccc-CCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 235 -------YLG--IEHVGGDFFES---VP-EADTILMKWVLS-SFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 235 -------~~~--v~~~~~D~~~~---~~-~~D~i~~~~vlh-~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
..+ +++..||+.+. .. ..|++++-..-= .=|+=-...+|+.+++.++|||.++-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 012 34556776552 22 238887632111 111112468999999999999988854
No 455
>COG0640 ArsR Predicted transcriptional regulators [Transcription]
Probab=69.39 E-value=11 Score=27.21 Aligned_cols=53 Identities=15% Similarity=0.328 Sum_probs=41.9
Q ss_pred HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
++....++.++..|.+. .+.++.+|+..++++ .. .+.+.|..|...|++....
T Consensus 21 ~l~~~~r~~il~~l~~~---~~~~~~~l~~~~~~~------~~-~v~~hL~~L~~~glv~~~~ 73 (110)
T COG0640 21 ALADPTRLEILSLLAEG---GELTVGELAEALGLS------QS-TVSHHLKVLREAGLVELRR 73 (110)
T ss_pred HhCCHHHHHHHHHHHhc---CCccHHHHHHHHCCC------hh-HHHHHHHHHHHCCCeEEEe
Confidence 34444667777777763 278899999999997 66 8999999999999999753
No 456
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=69.26 E-value=6.3 Score=35.17 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=39.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
-...|.+.|... +..|+.|||+.++++ +. -++|=|..|...|++.+
T Consensus 18 R~~~Il~~L~~~---~~vtv~eLa~~l~VS------~~-TIRRDL~~Le~~G~l~r 63 (269)
T PRK09802 18 RREQIIQRLRQQ---GSVQVNDLSALYGVS------TV-TIRNDLAFLEKQGIAVR 63 (269)
T ss_pred HHHHHHHHHHHc---CCEeHHHHHHHHCCC------HH-HHHHHHHHHHhCCCeEE
Confidence 445677888876 589999999999997 67 89999999999999994
No 457
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=68.71 E-value=8.2 Score=33.93 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=35.9
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
..+ |-.+||+.+|++ .. -++.-|+.|...|+|+.. .+.|.|-..
T Consensus 32 ~~LpsE~eLa~~lgVS------Rt-pVREAL~~L~~eGlv~~~--~~~G~~V~~ 76 (254)
T PRK09464 32 EKLPPERELAKQFDVS------RP-SLREAIQRLEAKGLLLRR--QGGGTFVQS 76 (254)
T ss_pred CcCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe--cCceeEEec
Confidence 467 899999999998 67 899999999999999964 334666544
No 458
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=68.60 E-value=9.5 Score=31.55 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=39.4
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
++..|++.|...| ...|+-+||+++|++ .. -+.|-|.-|...|.|...
T Consensus 5 ~~~~i~~~l~~~~--~~~~a~~i~k~l~i~------k~-~vNr~LY~L~~~~~v~~~ 52 (183)
T PHA02701 5 CASLILTLLSSSG--DKLPAKRIAKELGIS------KH-EANRCLYRLLESDAVSCE 52 (183)
T ss_pred HHHHHHHHHHhcC--CCCcHHHHHHHhCcc------HH-HHHHHHHHHhhcCcEecC
Confidence 4567889998873 269999999999997 55 788999999999999754
No 459
>PRK09990 DNA-binding transcriptional regulator GlcC; Provisional
Probab=68.33 E-value=8.5 Score=33.78 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=35.6
Q ss_pred CCCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 48 GAKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 48 ~~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
|..+ +-.+||+.+|++ .. -++.-|+.|...|+|+.. .+.|.|-.
T Consensus 28 G~~LPsE~eLa~~~gVS------Rt-pVREAL~~L~~eGlV~~~--~~~G~~V~ 72 (251)
T PRK09990 28 GQALPSERRLCEKLGFS------RS-ALREGLTVLRGRGIIETA--QGRGSFVA 72 (251)
T ss_pred CCcCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEe--CCCeeEEe
Confidence 3578 889999999998 67 899999999999999964 33455543
No 460
>PF02295 z-alpha: Adenosine deaminase z-alpha domain; InterPro: IPR000607 Double-stranded RNA-specific adenosine deaminase (3.5 from EC) converts multiple adenosines to inosines and creates I/U mismatched base pairs in double-helical RNA substrates without apparent sequence specificity. DRADA has been found to modify adenosines in AU-rich regions more frequently, probably due to the relative ease of melting A/U base pairs compared to G/C base pairs. The protein functions to modify viral RNA genomes, and may be responsible for hypermutation of certain negative-stranded viruses. DRADA edits the mRNAs for the glutamate receptor subunits by site-selective adenosine deamination. The DRADA repeat is also found in viral E3 proteins, which contain a double-stranded RNA-binding domain.; GO: 0003723 RNA binding, 0003726 double-stranded RNA adenosine deaminase activity; PDB: 1OYI_A 3EYI_A 2L4M_A 2HEO_D 1J75_A 1SFU_B 3IRR_B 2ACJ_C 3F22_B 2L54_A ....
Probab=68.31 E-value=7.8 Score=26.32 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=40.1
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
.+-.|++.|... |+.++..||...|++ -| .. .+.+.|..|...|.|.++. ..+-.|+++.
T Consensus 5 ~ee~Il~~L~~~---g~~~a~~ia~~~~L~--~~--kk-~VN~~LY~L~k~g~v~k~~-~~PP~W~l~~ 64 (66)
T PF02295_consen 5 LEEKILDFLKEL---GGSTATAIAKALGLS--VP--KK-EVNRVLYRLEKQGKVCKEG-GTPPKWSLTE 64 (66)
T ss_dssp HHHHHHHHHHHH---TSSEEEHHHHHHHHT--S---HH-HHHHHHHHHHHTTSEEEEC-SSSTEEEE-H
T ss_pred HHHHHHHHHHhc---CCccHHHHHHHhCcc--hh--HH-HHHHHHHHHHHCCCEeeCC-CCCCceEecc
Confidence 455677888776 356666666666553 11 34 7999999999999999653 2346777654
No 461
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=68.20 E-value=23 Score=32.77 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=37.6
Q ss_pred CchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC----C----CCeEEEccc
Q 018405 162 DSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY----P----RIKGINYDL 225 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~----p----~~~~~~~D~ 225 (356)
.|+....|.+..+.+-- +....+. .+.+..++|+|+|+|.++..+++.. | .+++..++.
T Consensus 51 Apels~lFGella~~~~----~~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~ 117 (370)
T COG1565 51 APELSQLFGELLAEQFL----QLWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEP 117 (370)
T ss_pred chhHHHHHHHHHHHHHH----HHHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEec
Confidence 45555666554432222 2222333 4456789999999999999888754 3 467777774
No 462
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=68.07 E-value=8.7 Score=33.41 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=35.5
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
..+ |-.+||+++|++ .. -++.-|+.|...|+|+.. .+.|.|-.
T Consensus 29 ~~LPsE~eLae~~gVS------Rt-~VReAL~~L~~eGlv~~~--~g~G~~V~ 72 (239)
T PRK04984 29 SILPAERELSELIGVT------RT-TLREVLQRLARDGWLTIQ--HGKPTKVN 72 (239)
T ss_pred CcCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEe--CCCeeEeC
Confidence 467 788999999998 67 899999999999999964 34466654
No 463
>COG2186 FadR Transcriptional regulators [Transcription]
Probab=67.94 E-value=7.3 Score=34.11 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=35.3
Q ss_pred CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
+-.|||+.+|++ .. .++.-|+.|.+.|+|+.. .+.|.|-.+
T Consensus 36 ~EreLae~fgVS------R~-~vREAl~~L~a~Glve~r--~G~Gt~V~~ 76 (241)
T COG2186 36 SERELAERFGVS------RT-VVREALKRLEAKGLVEIR--QGSGTFVRP 76 (241)
T ss_pred CHHHHHHHHCCC------cH-HHHHHHHHHHHCCCeeec--CCCceEecC
Confidence 678999999998 66 899999999999999974 456888764
No 464
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=67.69 E-value=9.1 Score=33.19 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=35.4
Q ss_pred CCCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 48 GAKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 48 ~~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
|..+ |-.+||+.+|++ .. -++.-|+.|...|+|+.. ++.|.|-.
T Consensus 27 G~~LpsE~~La~~lgVS------Rt-pVREAL~~Le~eGlV~~~--~~~G~~V~ 71 (235)
T TIGR02812 27 GSILPAERELSELIGVT------RT-TLREVLQRLARDGWLTIQ--HGKPTKVN 71 (235)
T ss_pred CCcCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe--CCCccEec
Confidence 3578 799999999998 67 899999999999999964 33455543
No 465
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=67.54 E-value=4.7 Score=24.34 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=19.7
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~ 82 (356)
.+.|+++||..+|++ +. .+.|.++...
T Consensus 7 ~~~~l~~iA~~~g~S------~~-~f~r~Fk~~~ 33 (42)
T PF00165_consen 7 QKLTLEDIAEQAGFS------PS-YFSRLFKKET 33 (42)
T ss_dssp SS--HHHHHHHHTS-------HH-HHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCC------HH-HHHHHHHHHH
Confidence 379999999999997 77 8888877543
No 466
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=67.45 E-value=25 Score=32.40 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=53.9
Q ss_pred CCCCceEEEEcCC-ccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChH
Q 018405 191 FEHVKKLVDVGGG-LGATLNMIISK-YPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDE 267 (356)
Q Consensus 191 ~~~~~~vLDiG~G-~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~ 267 (356)
..+..+||-+||| .|.++..++++ ....+++++|. +.-.+.++.... .+...+..+. ...|+|+=.-- . +
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~-~~~~~~~~~~-~g~d~viD~~G-~----~ 233 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE-TYLIDDIPED-LAVDHAFECVG-G----R 233 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc-eeehhhhhhc-cCCcEEEECCC-C----C
Confidence 3456789999976 45566677775 45567888874 555555543221 1111111111 11276653221 1 1
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEec
Q 018405 268 QSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 268 ~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
.....+..+.++|++||+++++..
T Consensus 234 ~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCcCCcEEEEEee
Confidence 124577888899999999998864
No 467
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=67.28 E-value=8.5 Score=22.87 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=19.4
Q ss_pred CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
|+.|+|+.+|++ +. .||.....|+|.
T Consensus 1 ti~e~A~~~gvs------~~-----tlR~ye~~Gll~ 26 (38)
T PF00376_consen 1 TIGEVAKLLGVS------PR-----TLRYYEREGLLP 26 (38)
T ss_dssp EHHHHHHHHTS-------HH-----HHHHHHHTTSS-
T ss_pred CHHHHHHHHCCC------HH-----HHHHHHHCCCCC
Confidence 578999999996 54 666777799994
No 468
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=66.93 E-value=7.6 Score=33.32 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=36.5
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.|++.+.++. .+.|..|||++++++ +. -+++.+..|+..|++..+
T Consensus 166 ~Vl~~~~~g~--~g~s~~eIa~~l~iS------~~-Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 166 AVRKLFKEPG--VQHTAETVAQALTIS------RT-TARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHHcCC--CCcCHHHHHHHhCcc------HH-HHHHHHHHHHhCCeEEEE
Confidence 3566666520 158999999999998 77 899999999999999964
No 469
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=66.93 E-value=9.4 Score=33.56 Aligned_cols=43 Identities=23% Similarity=0.246 Sum_probs=35.0
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
..+ +-.+||+.+|++ .. -++.-|+.|...|+|+.. .+.|.|-.
T Consensus 24 ~~LpsE~eLae~~gVS------Rt-pVREAL~~Le~~GlV~~~--~~~G~~V~ 67 (253)
T PRK10421 24 MKLPAERQLAMQLGVS------RN-SLREALAKLVSEGVLLSR--RGGGTFIR 67 (253)
T ss_pred CcCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe--CCCeEEEe
Confidence 467 688999999998 67 899999999999999963 34466544
No 470
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=66.82 E-value=7.9 Score=25.96 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=33.7
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
+++.+++.++.|.+ ... ....-+..+...|+++ .+ ++++++|+.|.
T Consensus 20 Gi~~~~~~~~~g~~-----~~~-~~~~~l~~l~~~Gll~---~~-~~~l~lT~~G~ 65 (66)
T PF06969_consen 20 GIDLSEFEQRFGID-----FAE-EFQKELEELQEDGLLE---ID-GGRLRLTEKGR 65 (66)
T ss_dssp EEEHHHHHHHTT-------THH-H-HHHHHHHHHTTSEE---E--SSEEEE-TTTG
T ss_pred CcCHHHHHHHHCcC-----HHH-HHHHHHHHHHHCCCEE---Ee-CCEEEECcccC
Confidence 78999999999985 133 5577899999999999 34 48999998774
No 471
>PRK08507 prephenate dehydrogenase; Validated
Probab=66.80 E-value=25 Score=31.27 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=46.9
Q ss_pred eEEEEcCCc--cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHHHH
Q 018405 196 KLVDVGGGL--GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKL 272 (356)
Q Consensus 196 ~vLDiG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~ 272 (356)
+|.=||+|. +.++..+.+.....+++++|. +...+.+....-+.. ..+..+ ..++|+|+++ .|++....+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~-~~~~~~-~~~aD~Vila-----vp~~~~~~~ 74 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDE-IVSFEE-LKKCDVIFLA-----IPVDAIIEI 74 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcc-cCCHHH-HhcCCEEEEe-----CcHHHHHHH
Confidence 466778774 445555655433456888885 555554433221111 112111 1235888875 355667788
Q ss_pred HHHHHHhCCCCCEEE
Q 018405 273 LKNCYKALPDGGKLL 287 (356)
Q Consensus 273 L~~~~~~L~pgG~li 287 (356)
++++.. ++|+..++
T Consensus 75 ~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 75 LPKLLD-IKENTTII 88 (275)
T ss_pred HHHHhc-cCCCCEEE
Confidence 888888 88776433
No 472
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=66.67 E-value=9.4 Score=33.65 Aligned_cols=44 Identities=20% Similarity=0.365 Sum_probs=35.4
Q ss_pred CCCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 48 GAKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 48 ~~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
|..+ |-.+||+.+|++ .. -++.-|+.|.+.|+|+.. .+.|.|-.
T Consensus 30 G~~LpsE~eLa~~~gVS------Rt-pVREAL~~L~~eGlV~~~--~~~G~~V~ 74 (257)
T PRK10225 30 GERLPPEREIAEMLDVT------RT-VVREALIMLEIKGLVEVR--RGAGIYVL 74 (257)
T ss_pred CCcCcCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe--cCCEEEEe
Confidence 3577 689999999998 67 899999999999999964 33466544
No 473
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=66.39 E-value=7.3 Score=29.68 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=30.1
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
++.|++|||..++++ -. .++-++.-|...|++..
T Consensus 54 ~~~SVAEiAA~L~lP------lg-VvrVLvsDL~~~G~v~v 87 (114)
T PF05331_consen 54 RPLSVAEIAARLGLP------LG-VVRVLVSDLADAGLVRV 87 (114)
T ss_pred CCccHHHHHHhhCCC------ch-hhhhhHHHHHhCCCEEE
Confidence 389999999999996 55 78888999999999994
No 474
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=65.92 E-value=8.3 Score=33.42 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=34.8
Q ss_pred CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
|-.|||+.+|++ .. -+++-|+.|+..|+|.+. .|.|+|-.
T Consensus 26 sE~eLa~~~gVS------R~-TVR~Al~~L~~eGli~r~--~G~GTfV~ 65 (233)
T TIGR02404 26 SEHELMDQYGAS------RE-TVRKALNLLTEAGYIQKI--QGKGSIVL 65 (233)
T ss_pred CHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEe--CCceEEEe
Confidence 789999999997 66 899999999999999974 45688864
No 475
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=65.43 E-value=6.1 Score=33.05 Aligned_cols=45 Identities=9% Similarity=-0.010 Sum_probs=38.5
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+.-|.+.|... +..++.+||+.++++ +. -+||=|+.|...|++.+
T Consensus 9 ~~~Il~~l~~~---~~~~~~~La~~~~vS------~~-TiRRDl~~L~~~g~~~r 53 (185)
T PRK04424 9 QKALQELIEEN---PFITDEELAEKFGVS------IQ-TIRLDRMELGIPELRER 53 (185)
T ss_pred HHHHHHHHHHC---CCEEHHHHHHHHCcC------HH-HHHHHHHHHhcchHHHH
Confidence 33466777776 589999999999997 67 89999999999999994
No 476
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=65.42 E-value=8.2 Score=34.09 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=39.6
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|.+.|.+. |..+++|||+.++++ +. -+||=|+.|...|++.+
T Consensus 7 ~~~Il~~l~~~---g~v~v~eLa~~~~VS------~~-TIRRDL~~Le~~g~l~R 51 (253)
T COG1349 7 HQKILELLKEK---GKVSVEELAELFGVS------EM-TIRRDLNELEEQGLLLR 51 (253)
T ss_pred HHHHHHHHHHc---CcEEHHHHHHHhCCC------HH-HHHHhHHHHHHCCcEEE
Confidence 34577888886 699999999999998 77 89999999999999994
No 477
>PF03551 PadR: Transcriptional regulator PadR-like family; InterPro: IPR005149 Phenolic acids, also called substituted hydroxycinnamic acids, are abundant in the plant kingdom because they are involved in the structure of plant cell walls and are present in some vacuoles. In plant-soil ecosystems they are released as free acids by hemicellulases produced by several fungi and bacteria. Of these weak acids, the most abundant are p-coumaric, ferulic, and caffeic acids, considered to be natural toxins that inhibit the growth of microorganisms, especially at low pHs. In spite of this chemical stress, some bacteria can use phenolic acids as a sole source of carbon. For other microorganisms, these compounds induce a specific response by which the organism adapts to its environment. The ubiquitous lactic acid bacterium Lactobacillus plantarum exhibits an inducible phenolic acid decarboxylase (PAD) activity which converts these substrates into less-toxic vinyl phenol derivatives. PadR acts as a repressor of padA gene expression in the phenolic acid stress response [].; PDB: 1XMA_B 2ESH_A 2DQL_B 3L9F_C 3ELK_B 4EJO_B 3L7W_A 3HHH_A 1YG2_A 3F8B_A ....
Probab=65.41 E-value=8.6 Score=26.62 Aligned_cols=56 Identities=11% Similarity=0.187 Sum_probs=37.0
Q ss_pred CCCCHHHHHHhCCCCCCC--chhHhhhHHHHHHHHhhCCcccceeeC-----CCcceecchhch
Q 018405 49 AKLSVAEIVAQIPLKDNN--PEAAAMMLDRVLRLLVSYNALHCSFVD-----GQRLYSLASVAK 105 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~--~~~~~~~l~r~L~~l~~~g~l~~~~~~-----~~~~y~~t~~~~ 105 (356)
+|.+.-+|.+.+.-.-++ .-.+. .+-..|+-|...|+|+..... ....|++|+.|+
T Consensus 8 ~~~~Gyei~~~l~~~~~~~~~i~~g-~lY~~L~~Le~~gli~~~~~~~~~~~~rk~Y~iT~~G~ 70 (75)
T PF03551_consen 8 GPMHGYEIKQELEERTGGFWKISPG-SLYPALKRLEEEGLIESRWEEEGNGRPRKYYRITEKGR 70 (75)
T ss_dssp S-EEHHHHHHHHHHCSTTTEETTHH-HHHHHHHHHHHTTSEEEEEEEETTSSEEEEEEESHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCcccChh-HHHHHHHHHHhCCCEEEeeeccCCCCCCEEEEECHHHH
Confidence 377777777665321000 01156 899999999999999976433 124699999987
No 478
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=65.15 E-value=8.4 Score=29.48 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=44.3
Q ss_pred HHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchh-HhhhHHHHHHHHhhCCcccceeeCC-Ccceecc
Q 018405 32 AVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEA-AAMMLDRVLRLLVSYNALHCSFVDG-QRLYSLA 101 (356)
Q Consensus 32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~-~~~~l~r~L~~l~~~g~l~~~~~~~-~~~y~~t 101 (356)
+..+.-|++.|.+.+ ++.|++||-+.+.-. .+.. .. -+-|-|+.|...|++.+....+ ...|...
T Consensus 7 T~~R~~Il~~l~~~~--~~~ta~ei~~~l~~~--~~~is~~-TVYR~L~~L~e~Gli~~~~~~~~~~~Y~~~ 73 (120)
T PF01475_consen 7 TPQRLAILELLKESP--EHLTAEEIYDKLRKK--GPRISLA-TVYRTLDLLEEAGLIRKIEFGDGESRYELS 73 (120)
T ss_dssp HHHHHHHHHHHHHHS--SSEEHHHHHHHHHHT--TTT--HH-HHHHHHHHHHHTTSEEEEEETTSEEEEEES
T ss_pred CHHHHHHHHHHHcCC--CCCCHHHHHHHhhhc--cCCcCHH-HHHHHHHHHHHCCeEEEEEcCCCcceEeec
Confidence 455667788887754 599999999987532 1111 33 6889999999999999754331 2456554
No 479
>PF09681 Phage_rep_org_N: N-terminal phage replisome organiser (Phage_rep_org_N); InterPro: IPR010056 This entry is represented by the N-terminal domain of Bacteriophage A500, Gp45. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The proteins in this entry contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The low-complexity region is adjacent to this N-terminal domain.
Probab=64.87 E-value=12 Score=28.80 Aligned_cols=46 Identities=4% Similarity=0.099 Sum_probs=38.1
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
.|.|.++||..++-+ .. .++.-|..+...|+++ ..++|.|.++...
T Consensus 52 ipy~~e~LA~~~~~~------~~-~V~~AL~~f~k~glIe---~~ed~~i~i~~~~ 97 (121)
T PF09681_consen 52 IPYTAEMLALEFDRP------VD-TVRLALAVFQKLGLIE---IDEDGVIYIPNWE 97 (121)
T ss_pred CCCcHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEE---EecCCeEEeecHH
Confidence 499999999999986 66 8999999999999999 4446778776433
No 480
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=64.60 E-value=21 Score=34.93 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=56.4
Q ss_pred CCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC--------------C--------
Q 018405 193 HVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE--------------S-------- 248 (356)
Q Consensus 193 ~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~--------------~-------- 248 (356)
++.+++=+|+|. |..+..+++.. +..++++|. +...+.++.. ..+++..|..+ +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence 458999999995 46666666664 456888884 6666666543 23333333211 0
Q ss_pred ----CCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 249 ----VPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 249 ----~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
..+.|+|+..-.+.-- +...-+.+++.+.||||+.++=
T Consensus 241 ~~e~~~~~DIVI~TalipG~--~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGK--PAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHhCCCCEEEECcccCCC--CCCeeehHHHHhhCCCCCEEEE
Confidence 1234999766544322 1234577888999999988553
No 481
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=64.53 E-value=16 Score=24.06 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=38.0
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhh---CCcccceeeCCCcceecchhch
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVS---YNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~---~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
++.+|..+.+. .|+..-|+.++++ +. .+.+.++.|.. .-++. +.+ +.+.+|+.|+
T Consensus 3 ~l~~f~~v~~~-----gs~~~AA~~l~is------~~-~vs~~i~~LE~~lg~~Lf~---r~~-~~~~lT~~G~ 60 (60)
T PF00126_consen 3 QLRYFLAVAET-----GSISAAAEELGIS------QS-AVSRQIKQLEEELGVPLFE---RSG-RGLRLTEAGE 60 (60)
T ss_dssp HHHHHHHHHHH-----SSHHHHHHHCTSS------HH-HHHHHHHHHHHHHTS-SEE---ECS-SSEEE-HHHH
T ss_pred HHHHHHHHHHh-----CCHHHHHHHhhcc------ch-HHHHHHHHHHHHhCCeEEE---ECC-CCeeEChhhC
Confidence 45677788774 4999999999998 66 67777666654 55677 333 5688888763
No 482
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=64.51 E-value=8.9 Score=36.73 Aligned_cols=92 Identities=18% Similarity=0.150 Sum_probs=53.1
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEE------Eccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGI------NYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFD 265 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~------~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~ 265 (356)
...+|+-||||+=..+.++--+-.++.++ ++|. +...+.|.. +.. ...+..+-.+.+|+|++. .|
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~-dGF--~v~~~~Ea~~~ADvVviL-----lP 106 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE-NGF--KVGTYEELIPQADLVINL-----TP 106 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh-cCC--ccCCHHHHHHhCCEEEEc-----CC
Confidence 35899999999766544433333344443 2221 122222221 222 223322234567998874 45
Q ss_pred hHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 266 DEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 266 ~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
|+....+.+++...||||..|.....+
T Consensus 107 Dt~q~~v~~~i~p~LK~Ga~L~fsHGF 133 (487)
T PRK05225 107 DKQHSDVVRAVQPLMKQGAALGYSHGF 133 (487)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEecCCc
Confidence 555667779999999999988886543
No 483
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=64.37 E-value=9.2 Score=33.18 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=35.1
Q ss_pred CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
|-.|||+..|++ .. -+++-|+.|+..|+|.+. .+.|+|-..
T Consensus 34 sE~eLa~~~~VS------R~-TvR~Al~~L~~eGli~r~--~G~GtfV~~ 74 (238)
T TIGR02325 34 AEMQLAERFGVN------RH-TVRRAIAALVERGLLRAE--QGRGTFVAA 74 (238)
T ss_pred CHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEe--cCCEEEECC
Confidence 888999999997 66 899999999999999974 456888753
No 484
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=64.37 E-value=33 Score=32.34 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=45.1
Q ss_pred ceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCCC------CCCCcEEEeccc
Q 018405 195 KKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFES------VPEADTILMKWV 260 (356)
Q Consensus 195 ~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~~------~~~~D~i~~~~v 260 (356)
.+||-|||| .|......+.+..+.++++.|. +..++.+... ++++..+.|..+. ..+.|+|+...-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 578999996 5666666656566678999996 5666666443 5899999998873 123377765433
No 485
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=64.36 E-value=36 Score=31.23 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=52.6
Q ss_pred CCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEE---EccCCC-CC-CC-CcEEEecccccC
Q 018405 192 EHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHV---GGDFFE-SV-PE-ADTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~---~~D~~~-~~-~~-~D~i~~~~vlh~ 263 (356)
.+..+||-+|+| .|.++..+++...-.++++.|. ++-.+.+++..--.++ ..|+.+ .. .. .|+|+-.--
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G--- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG--- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC---
Confidence 356788888876 5567777777653335777774 5555555543211111 111111 01 11 277654321
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
. ...++.+.++|+|||+++++..
T Consensus 245 --~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 --H---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred --C---HHHHHHHHHHhhcCCEEEEEcc
Confidence 1 2456778889999999999875
No 486
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=64.19 E-value=9.3 Score=28.75 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=45.3
Q ss_pred CCccHHHHHHHHhC--CCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC--C-----CCCcEEEecccccCCChHHHHH
Q 018405 202 GGLGATLNMIISKY--PRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES--V-----PEADTILMKWVLSSFDDEQSLK 271 (356)
Q Consensus 202 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~--~-----~~~D~i~~~~vlh~~~~~~~~~ 271 (356)
||.|.++..+++.+ .+..++++|. +..++.++.. .+.++.||..++ + .++|.+++..- +|+....
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~~ 78 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENLL 78 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCccccCEEEEccC----CHHHHHH
Confidence 34455555555533 4457888885 7777766544 488999998873 1 22366665422 3333334
Q ss_pred HHHHHHHhCCCCCEEEE
Q 018405 272 LLKNCYKALPDGGKLLN 288 (356)
Q Consensus 272 ~L~~~~~~L~pgG~lii 288 (356)
+.. ..+.+.|..+++.
T Consensus 79 ~~~-~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IAL-LARELNPDIRIIA 94 (116)
T ss_dssp HHH-HHHHHTTTSEEEE
T ss_pred HHH-HHHHHCCCCeEEE
Confidence 444 3445566666665
No 487
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=64.17 E-value=9.9 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.4
Q ss_pred CCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 51 LSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 51 ~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
.|-.+|+..+ |++ +. -++|.++.|+..|+|.+
T Consensus 71 pSN~~La~r~~G~s------~~-tlrR~l~~LveaGLI~r 103 (177)
T PF03428_consen 71 PSNAQLAERLNGMS------ER-TLRRHLARLVEAGLIVR 103 (177)
T ss_pred cCHHHHHHHHcCCC------HH-HHHHHHHHHHHCCCeee
Confidence 4779999999 997 78 99999999999999996
No 488
>PLN02494 adenosylhomocysteinase
Probab=64.08 E-value=16 Score=35.28 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=57.0
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEE
Q 018405 179 VVMEKVLESYKGFEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTIL 256 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~ 256 (356)
..+..+.+.-+..-...+|+-+|+| .|......++.+ +.+++++|. +.....+.. ....+. ++.+..+.+|+|+
T Consensus 239 S~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~-Ga~VIV~e~dp~r~~eA~~-~G~~vv--~leEal~~ADVVI 314 (477)
T PLN02494 239 SLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA-GARVIVTEIDPICALQALM-EGYQVL--TLEDVVSEADIFV 314 (477)
T ss_pred cHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCchhhHHHHh-cCCeec--cHHHHHhhCCEEE
Confidence 3455555543322346899999998 455555555555 568888875 432222221 122222 2222233459888
Q ss_pred ecccccCCChHHHHHH-HHHHHHhCCCCCEEEEEec
Q 018405 257 MKWVLSSFDDEQSLKL-LKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~-L~~~~~~L~pgG~lii~e~ 291 (356)
..-- ...+ .....+.||||+.|+.+-.
T Consensus 315 ~tTG--------t~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 315 TTTG--------NKDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ECCC--------CccchHHHHHhcCCCCCEEEEcCC
Confidence 7322 1232 3677889999999988754
No 489
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=63.81 E-value=9.5 Score=32.97 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=32.5
Q ss_pred CCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 48 GAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
|..++..+||+.+|++ .. -++.-|..|+..|+|+..
T Consensus 37 G~~l~e~~La~~~gvS------rt-PVReAL~rL~~eGlv~~~ 72 (230)
T COG1802 37 GERLSEEELAEELGVS------RT-PVREALRRLEAEGLVEIE 72 (230)
T ss_pred CCCccHHHHHHHhCCC------Cc-cHHHHHHHHHHCCCeEec
Confidence 4699999999999997 66 789999999999999964
No 490
>PF09929 DUF2161: Uncharacterized conserved protein (DUF2161); InterPro: IPR018679 This family of various hypothetical prokaryotic proteins has no known function.
Probab=63.80 E-value=9.6 Score=29.03 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=35.6
Q ss_pred hHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 40 EIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 40 ~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
..|... ||.+..+|++.++++ . ..++|+- ---|++++ .+.|.|.||+.|.
T Consensus 66 ~~L~~~---Gp~~~~~l~~~~~~~-------~--A~~IL~~-N~YGWFeR---v~rGvY~LT~~G~ 115 (118)
T PF09929_consen 66 AALAEH---GPSRPADLRKATGVP-------K--ATSILRD-NHYGWFER---VERGVYALTPAGR 115 (118)
T ss_pred HHHHHc---CCCCHHHHHHhcCCC-------h--HHHHHHh-Ccccceee---eccceEecCcchh
Confidence 456655 699999999999984 2 2334432 23688884 4469999999885
No 491
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=63.69 E-value=79 Score=25.69 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=40.3
Q ss_pred CCceEEEEcCCccHHH-HHHHHhCCCCeEEEccc-hHHHHhCCCCC--CceEEEccCCCCCCCCcEEEecccccCCChHH
Q 018405 193 HVKKLVDVGGGLGATL-NMIISKYPRIKGINYDL-PYVIKNAPSYL--GIEHVGGDFFESVPEADTILMKWVLSSFDDEQ 268 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~-~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~ 268 (356)
...+|+=.|+|+...+ ..++..-++.-..++|. |. ++.+-.+ ++.++.-+..... ..|.|+...-- -
T Consensus 67 ~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~--K~G~~~PGt~ipI~~p~~l~~~-~pd~vivlaw~------y 137 (160)
T PF08484_consen 67 EGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL--KQGKYLPGTHIPIVSPEELKER-KPDYVIVLAWN------Y 137 (160)
T ss_dssp TT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG--GTTEE-TTT--EEEEGGG--SS---SEEEES-GG------G
T ss_pred cCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh--hcCcccCCCCCeECCHHHHhhC-CCCEEEEcChh------h
Confidence 5688999999987654 44554434433344453 32 1211112 4555555443321 11766553322 2
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 018405 269 SLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 269 ~~~~L~~~~~~L~pgG~lii 288 (356)
...+.+++.+.+..||++++
T Consensus 138 ~~EI~~~~~~~~~~gg~fi~ 157 (160)
T PF08484_consen 138 KDEIIEKLREYLERGGKFIV 157 (160)
T ss_dssp HHHHHHHTHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHhcCCEEEE
Confidence 57788888888889999987
No 492
>PRK11523 DNA-binding transcriptional repressor ExuR; Provisional
Probab=63.67 E-value=12 Score=32.93 Aligned_cols=43 Identities=12% Similarity=0.150 Sum_probs=34.7
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
..+ |-.+||+.+|++ .. -++.-|+.|...|+|+.. .+.|.|-.
T Consensus 30 ~~LpsE~eLae~~gVS------Rt-pVREAL~~L~~eGlV~~~--~~~G~~V~ 73 (253)
T PRK11523 30 DKLPAERFIADEKNVS------RT-VVREAIIMLEVEGYVEVR--KGSGIHVV 73 (253)
T ss_pred CCCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEe--cCCeeEEe
Confidence 577 578999999998 67 899999999999999964 33465544
No 493
>PRK14999 histidine utilization repressor; Provisional
Probab=63.62 E-value=9.4 Score=33.30 Aligned_cols=42 Identities=29% Similarity=0.316 Sum_probs=35.6
Q ss_pred CC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 50 KL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 50 ~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
.+ |-.+||+.+|++ .. -+++-|+.|+..|+|.+. .+.|+|-.
T Consensus 35 ~LPsE~eLa~~~gVS------R~-TVR~Al~~L~~eGli~r~--~GkGTfV~ 77 (241)
T PRK14999 35 RIPSEAELVAQYGFS------RM-TINRALRELTDEGWLVRL--QGVGTFVA 77 (241)
T ss_pred cCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEe--cCcEEEEC
Confidence 44 899999999997 66 899999999999999974 45688864
No 494
>COG2188 PhnF Transcriptional regulators [Transcription]
Probab=63.31 E-value=10 Score=33.09 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=36.5
Q ss_pred CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
|-.|||+.+|++ +. -+++-|+.|+..|+|.+. .|.|+|-..+
T Consensus 33 sE~eLa~~f~VS------R~-TvRkAL~~L~~eGli~r~--~G~GtfV~~~ 74 (236)
T COG2188 33 SERELAEQFGVS------RM-TVRKALDELVEEGLIVRR--QGKGTFVASP 74 (236)
T ss_pred CHHHHHHHHCCc------HH-HHHHHHHHHHHCCcEEEE--ecCeeEEcCc
Confidence 778999999997 66 899999999999999974 3568998765
No 495
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=63.23 E-value=9.9 Score=32.06 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=29.6
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+.|+.|||+.+|++ .+. -+.+.|+.|...|++..
T Consensus 25 ~~~~~ela~~~~~~-----s~~-tv~~~l~~L~~~g~i~~ 58 (199)
T TIGR00498 25 PPSIREIARAVGLR-----SPS-AAEEHLKALERKGYIER 58 (199)
T ss_pred CCcHHHHHHHhCCC-----ChH-HHHHHHHHHHHCCCEec
Confidence 67899999999994 145 78999999999999994
No 496
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=63.20 E-value=15 Score=28.66 Aligned_cols=47 Identities=15% Similarity=0.271 Sum_probs=35.3
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhC----CCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQI----PLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.++.|.+.|=+. ++.|+.||.+.+ +++ +. -+..+|+-|...|+|...
T Consensus 5 ~E~~VM~vlW~~---~~~t~~eI~~~l~~~~~~~------~t-Tv~T~L~rL~~KG~v~~~ 55 (130)
T TIGR02698 5 AEWEVMRVVWTL---GETTSRDIIRILAEKKDWS------DS-TIKTLLGRLVDKGCLTTE 55 (130)
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHhhccCCc------HH-HHHHHHHHHHHCCceeee
Confidence 345566666444 588999977775 554 56 789999999999999964
No 497
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=63.14 E-value=28 Score=35.82 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=81.1
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------------------CCceEEEccCCCCC
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------------------LGIEHVGGDFFESV 249 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------------~~v~~~~~D~~~~~ 249 (356)
..+|.-||+|+=...+...-...+..++.+|. ++.++.+..+ .++++. .|+ +..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~ 390 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AGF 390 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HHh
Confidence 46899999997544444444446888999995 6655443211 234332 222 223
Q ss_pred CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc--------CCC-
Q 018405 250 PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV--------PHG- 320 (356)
Q Consensus 250 ~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~- 320 (356)
.++|+|+=+ +..++ +-..++++++-+.++|+..|.-.....+-..-.....+......++++.-. ..+
T Consensus 391 ~~aDlViEa-v~E~l--~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~ 467 (715)
T PRK11730 391 ERVDVVVEA-VVENP--KVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGE 467 (715)
T ss_pred cCCCEEEec-ccCcH--HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCC
Confidence 334877654 55555 457899999999999997776654443311000000001112222222100 001
Q ss_pred --ccCCHHHHHHHHHHcCCcceeEEEccC
Q 018405 321 --RERTKQEYSELAIKAGFKGVNYEYGAC 347 (356)
Q Consensus 321 --~~~t~~e~~~ll~~aGf~~~~~~~~~~ 347 (356)
...+.+...++++..|...+.+...++
T Consensus 468 ~T~~~~~~~~~~~~~~lgk~pv~v~d~pG 496 (715)
T PRK11730 468 KTSDETIATVVAYASKMGKTPIVVNDCPG 496 (715)
T ss_pred CCCHHHHHHHHHHHHHhCCceEEecCcCc
Confidence 122456677889999999888754444
No 498
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=62.92 E-value=29 Score=25.07 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHHHHhcCchh-HHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHH
Q 018405 28 AAMHAVVELDVFE-IISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLL 81 (356)
Q Consensus 28 ~~l~~a~~lglf~-~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l 81 (356)
-.-..+.++.|+. .|.. +.|..+|++.+|++ .. -+.|.=+.|
T Consensus 31 E~~~l~~R~~va~~lL~~-----g~syreIa~~tgvS------~a-TItRvsr~L 73 (87)
T PF01371_consen 31 ELEALAQRWQVAKELLDE-----GKSYREIAEETGVS------IA-TITRVSRCL 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHT-----TSSHHHHHHHHTST------HH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHC-----CCCHHHHHHHhCCC------HH-HHHHHHHHH
Confidence 4556678999999 6664 79999999999997 44 555555544
No 499
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=62.79 E-value=11 Score=32.28 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 48 GAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 48 ~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
|..++..+||+.+|++ .. -++.-|+.|...|+|+..
T Consensus 32 G~~L~e~~La~~lgVS------Rt-pVREAL~~L~~eGLV~~~ 67 (221)
T PRK11414 32 GARLITKNLAEQLGMS------IT-PVREALLRLVSVNALSVA 67 (221)
T ss_pred CCccCHHHHHHHHCCC------ch-hHHHHHHHHHHCCCEEec
Confidence 3578889999999998 66 799999999999999953
No 500
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.64 E-value=74 Score=27.40 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=49.3
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCC--CeEEEcc--chHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHH
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPR--IKGINYD--LPYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQ 268 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D--~~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~ 268 (356)
.+..||-.||..|....++++.|.+ ..+...- ++.+.+.+.+ .++.....|+.++ ++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-~gl~~~kLDV~~~------------------~~ 66 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-FGLKPYKLDVSKP------------------EE 66 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-hCCeeEEeccCCh------------------HH
Confidence 5678999999999999999998754 3444433 2444443322 2455555554443 66
Q ss_pred HHHHHHHHHHhCCCCCEEEE
Q 018405 269 SLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 269 ~~~~L~~~~~~L~pgG~lii 288 (356)
...+..++++- |+|+|=+
T Consensus 67 V~~v~~evr~~--~~Gkld~ 84 (289)
T KOG1209|consen 67 VVTVSGEVRAN--PDGKLDL 84 (289)
T ss_pred HHHHHHHHhhC--CCCceEE
Confidence 88888888875 7776644
Done!