Query 018405
Match_columns 356
No_of_seqs 188 out of 2169
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 14:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a6d_A Hydroxyindole O-methylt 100.0 2E-55 7E-60 407.2 33.2 330 10-356 5-345 (353)
2 3p9c_A Caffeic acid O-methyltr 100.0 4E-54 1.4E-58 400.2 39.4 345 7-356 14-364 (364)
3 3reo_A (ISO)eugenol O-methyltr 100.0 1.2E-53 4.1E-58 397.7 38.9 344 9-356 17-366 (368)
4 3lst_A CALO1 methyltransferase 100.0 4.9E-50 1.7E-54 371.1 33.0 325 9-356 18-347 (348)
5 3gwz_A MMCR; methyltransferase 100.0 4.2E-50 1.4E-54 374.2 31.8 333 1-356 26-368 (369)
6 1fp2_A Isoflavone O-methyltran 100.0 5.7E-48 1.9E-52 357.9 33.6 337 8-356 11-352 (352)
7 1zg3_A Isoflavanone 4'-O-methy 100.0 3.8E-48 1.3E-52 359.8 31.9 337 10-356 7-358 (358)
8 1fp1_D Isoliquiritigenin 2'-O- 100.0 2.8E-48 9.6E-53 362.5 31.1 339 11-356 20-372 (372)
9 3i53_A O-methyltransferase; CO 100.0 7.2E-49 2.5E-53 361.2 25.9 316 15-356 7-331 (332)
10 2ip2_A Probable phenazine-spec 100.0 1.5E-47 5.1E-52 352.8 31.7 319 12-356 7-333 (334)
11 3dp7_A SAM-dependent methyltra 100.0 6.5E-45 2.2E-49 338.4 26.6 324 10-356 12-354 (363)
12 1qzz_A RDMB, aclacinomycin-10- 100.0 4.9E-45 1.7E-49 341.1 24.5 324 11-356 14-355 (374)
13 1tw3_A COMT, carminomycin 4-O- 100.0 1.4E-44 5E-49 336.2 25.6 325 10-356 16-355 (360)
14 2r3s_A Uncharacterized protein 100.0 3.2E-43 1.1E-47 323.9 28.3 315 14-355 7-333 (335)
15 1x19_A CRTF-related protein; m 100.0 9.9E-43 3.4E-47 323.6 29.9 312 9-356 26-358 (359)
16 3mcz_A O-methyltransferase; ad 100.0 9.5E-43 3.2E-47 323.0 27.5 313 11-356 22-348 (352)
17 4gek_A TRNA (CMO5U34)-methyltr 99.9 1.7E-21 5.6E-26 172.1 15.9 171 182-356 61-256 (261)
18 3dtn_A Putative methyltransfer 99.8 7.6E-20 2.6E-24 159.0 17.6 174 182-356 33-225 (234)
19 3dlc_A Putative S-adenosyl-L-m 99.8 7.6E-20 2.6E-24 157.0 8.8 169 180-354 32-212 (219)
20 3dh0_A SAM dependent methyltra 99.8 2E-18 6.8E-23 148.4 14.0 155 182-356 27-192 (219)
21 3hnr_A Probable methyltransfer 99.8 4E-18 1.4E-22 146.7 15.7 166 183-356 36-211 (220)
22 3ou2_A SAM-dependent methyltra 99.8 7.7E-18 2.6E-22 144.5 14.9 160 182-346 35-206 (218)
23 3ujc_A Phosphoethanolamine N-m 99.8 4E-18 1.4E-22 150.8 13.6 156 181-346 44-207 (266)
24 1vl5_A Unknown conserved prote 99.8 3.1E-18 1.1E-22 151.3 12.1 154 181-345 26-190 (260)
25 1ve3_A Hypothetical protein PH 99.8 1.2E-18 4.1E-23 150.5 8.9 161 192-356 37-226 (227)
26 3dli_A Methyltransferase; PSI- 99.7 2E-17 6.9E-22 144.3 15.5 150 182-346 30-185 (240)
27 3bus_A REBM, methyltransferase 99.7 1.9E-17 6.6E-22 147.2 15.0 158 180-346 49-217 (273)
28 3pfg_A N-methyltransferase; N, 99.7 7.3E-18 2.5E-22 149.2 12.1 163 192-356 49-248 (263)
29 1kpg_A CFA synthase;, cyclopro 99.7 3.1E-17 1.1E-21 147.0 16.4 163 181-345 53-228 (287)
30 2o57_A Putative sarcosine dime 99.7 1.5E-17 5E-22 149.9 13.6 156 179-345 65-234 (297)
31 1xxl_A YCGJ protein; structura 99.7 2.4E-17 8.2E-22 143.8 13.9 155 180-345 9-174 (239)
32 1xtp_A LMAJ004091AAA; SGPP, st 99.7 8.4E-18 2.9E-22 147.8 10.7 150 181-346 82-239 (254)
33 3hem_A Cyclopropane-fatty-acyl 99.7 6.1E-17 2.1E-21 146.2 16.2 163 181-346 61-244 (302)
34 1nkv_A Hypothetical protein YJ 99.7 1.7E-17 5.7E-22 146.1 11.8 153 181-345 25-187 (256)
35 3ege_A Putative methyltransfer 99.7 8.6E-17 2.9E-21 142.2 16.0 153 180-345 22-178 (261)
36 3bxo_A N,N-dimethyltransferase 99.7 3.6E-17 1.2E-21 142.3 13.1 163 192-356 39-238 (239)
37 3h2b_A SAM-dependent methyltra 99.7 1.4E-17 4.7E-22 141.4 9.8 137 194-346 42-183 (203)
38 2fk8_A Methoxy mycolic acid sy 99.7 8.1E-17 2.8E-21 146.5 15.4 164 180-345 78-254 (318)
39 3vc1_A Geranyl diphosphate 2-C 99.7 7.9E-17 2.7E-21 146.2 15.0 162 173-345 97-269 (312)
40 3f4k_A Putative methyltransfer 99.7 3.6E-17 1.2E-21 144.0 12.2 153 181-346 34-197 (257)
41 3mgg_A Methyltransferase; NYSG 99.7 1.8E-17 6.2E-22 147.6 10.1 153 191-345 35-198 (276)
42 3kkz_A Uncharacterized protein 99.7 3E-17 1E-21 145.6 11.0 152 182-346 35-197 (267)
43 3l8d_A Methyltransferase; stru 99.7 2E-16 7E-21 137.9 15.2 142 192-345 52-200 (242)
44 3i9f_A Putative type 11 methyl 99.7 3E-17 1E-21 135.3 9.2 146 184-355 9-158 (170)
45 3e23_A Uncharacterized protein 99.7 6.3E-17 2.1E-21 138.3 11.4 138 191-345 41-182 (211)
46 3ocj_A Putative exported prote 99.7 4.9E-17 1.7E-21 147.1 11.3 165 191-356 116-303 (305)
47 3gu3_A Methyltransferase; alph 99.7 4.7E-17 1.6E-21 145.7 10.9 162 182-345 11-190 (284)
48 2p7i_A Hypothetical protein; p 99.7 7.4E-17 2.5E-21 141.0 11.6 144 192-345 41-199 (250)
49 2qe6_A Uncharacterized protein 99.7 2.9E-16 9.8E-21 139.6 15.3 151 182-341 66-238 (274)
50 1pjz_A Thiopurine S-methyltran 99.7 5.5E-17 1.9E-21 137.9 10.1 141 183-345 13-176 (203)
51 2ex4_A Adrenal gland protein A 99.7 4.1E-17 1.4E-21 142.4 9.3 138 193-346 79-226 (241)
52 3g2m_A PCZA361.24; SAM-depende 99.7 6.2E-17 2.1E-21 146.0 10.5 174 178-355 69-290 (299)
53 4fsd_A Arsenic methyltransfera 99.7 1.8E-16 6.2E-21 147.9 12.7 144 192-344 82-250 (383)
54 3lcc_A Putative methyl chlorid 99.7 1.6E-16 5.6E-21 138.0 11.5 132 194-346 67-208 (235)
55 3jwh_A HEN1; methyltransferase 99.7 3.4E-16 1.2E-20 134.3 12.6 149 184-341 21-188 (217)
56 3jwg_A HEN1, methyltransferase 99.7 3E-16 1E-20 134.8 12.1 151 183-342 20-189 (219)
57 3bkw_A MLL3908 protein, S-aden 99.7 3.2E-16 1.1E-20 136.7 12.0 159 183-345 34-214 (243)
58 3ccf_A Cyclopropane-fatty-acyl 99.7 5.8E-16 2E-20 138.1 13.8 156 183-345 48-210 (279)
59 2qm3_A Predicted methyltransfe 99.7 1.8E-15 6.2E-20 140.5 16.8 214 37-292 47-279 (373)
60 3bkx_A SAM-dependent methyltra 99.7 8.5E-16 2.9E-20 136.6 13.9 160 182-345 33-219 (275)
61 4htf_A S-adenosylmethionine-de 99.7 2.6E-16 8.8E-21 140.9 10.5 156 182-346 59-233 (285)
62 2p35_A Trans-aconitate 2-methy 99.7 2.1E-16 7.1E-21 139.3 9.6 152 182-340 23-185 (259)
63 3g5l_A Putative S-adenosylmeth 99.7 2.7E-16 9.3E-21 138.2 9.7 160 182-345 34-216 (253)
64 3sm3_A SAM-dependent methyltra 99.6 1.2E-15 4E-20 132.2 13.1 149 192-345 29-207 (235)
65 1vlm_A SAM-dependent methyltra 99.6 2.6E-15 8.9E-20 129.0 15.1 138 193-345 47-188 (219)
66 3cgg_A SAM-dependent methyltra 99.6 1.5E-15 5E-20 127.6 13.3 132 183-345 38-175 (195)
67 2yqz_A Hypothetical protein TT 99.6 9E-16 3.1E-20 135.4 12.1 146 191-343 37-194 (263)
68 1y8c_A S-adenosylmethionine-de 99.6 9.7E-16 3.3E-20 133.7 11.7 162 193-356 37-244 (246)
69 3d2l_A SAM-dependent methyltra 99.6 1.6E-15 5.6E-20 132.1 13.0 95 192-289 32-136 (243)
70 2xvm_A Tellurite resistance pr 99.6 1.8E-15 6.3E-20 127.6 12.8 142 183-345 23-173 (199)
71 3e8s_A Putative SAM dependent 99.6 6.7E-16 2.3E-20 133.0 10.1 154 182-344 42-208 (227)
72 2zfu_A Nucleomethylin, cerebra 99.6 3E-15 1E-19 128.2 12.3 131 183-356 57-190 (215)
73 3g07_A 7SK snRNA methylphospha 99.6 3.3E-16 1.1E-20 140.7 6.5 145 193-345 46-269 (292)
74 4hg2_A Methyltransferase type 99.6 1.6E-15 5.5E-20 133.2 10.7 97 193-294 39-139 (257)
75 3ggd_A SAM-dependent methyltra 99.6 1E-15 3.6E-20 133.7 8.3 147 191-344 54-218 (245)
76 2p8j_A S-adenosylmethionine-de 99.6 8.9E-16 3E-20 130.7 6.5 151 191-342 21-180 (209)
77 2aot_A HMT, histamine N-methyl 99.6 3.4E-15 1.2E-19 134.1 10.6 142 192-342 51-218 (292)
78 3cc8_A Putative methyltransfer 99.6 1.8E-15 6.3E-20 130.5 7.6 151 183-346 24-186 (230)
79 3g5t_A Trans-aconitate 3-methy 99.6 7.1E-15 2.4E-19 132.4 11.1 163 168-338 13-197 (299)
80 2gb4_A Thiopurine S-methyltran 99.6 1.1E-14 3.7E-19 127.7 11.9 132 192-344 67-226 (252)
81 4e2x_A TCAB9; kijanose, tetron 99.5 1.3E-14 4.5E-19 136.8 10.2 153 178-346 93-254 (416)
82 1ri5_A MRNA capping enzyme; me 99.5 7.3E-15 2.5E-19 132.0 8.1 154 191-345 62-250 (298)
83 3thr_A Glycine N-methyltransfe 99.5 3E-15 1E-19 134.4 5.0 105 184-291 49-176 (293)
84 3giw_A Protein of unknown func 99.5 1.2E-13 4.3E-18 120.7 14.3 152 182-341 67-243 (277)
85 2i62_A Nicotinamide N-methyltr 99.5 1.9E-14 6.4E-19 127.1 8.8 141 191-346 54-240 (265)
86 3ofk_A Nodulation protein S; N 99.5 6.2E-15 2.1E-19 126.2 5.4 100 191-292 49-156 (216)
87 2a14_A Indolethylamine N-methy 99.5 1E-14 3.5E-19 128.9 7.0 139 191-345 53-238 (263)
88 3m70_A Tellurite resistance pr 99.5 5.3E-14 1.8E-18 125.8 11.8 139 184-343 112-258 (286)
89 1wzn_A SAM-dependent methyltra 99.5 9.1E-14 3.1E-18 121.8 12.8 105 182-289 31-144 (252)
90 2kw5_A SLR1183 protein; struct 99.5 1.2E-13 4E-18 117.0 12.9 133 193-345 30-171 (202)
91 2gs9_A Hypothetical protein TT 99.5 7.2E-14 2.5E-18 119.1 11.3 138 183-336 28-171 (211)
92 2g72_A Phenylethanolamine N-me 99.5 1.1E-14 3.9E-19 130.4 5.7 138 193-345 71-256 (289)
93 3q87_B N6 adenine specific DNA 99.5 4E-13 1.4E-17 110.6 13.9 118 193-346 23-150 (170)
94 3uwp_A Histone-lysine N-methyl 99.5 1.2E-13 4.2E-18 126.6 11.7 114 180-297 161-295 (438)
95 2b3t_A Protein methyltransfera 99.5 4E-13 1.4E-17 119.5 14.1 144 181-356 99-275 (276)
96 3e05_A Precorrin-6Y C5,15-meth 99.5 5.9E-13 2E-17 112.8 14.2 121 182-337 30-160 (204)
97 1fbn_A MJ fibrillarin homologu 99.5 5E-13 1.7E-17 115.6 13.9 141 191-356 72-227 (230)
98 3grz_A L11 mtase, ribosomal pr 99.5 1.1E-13 3.9E-18 117.4 9.6 129 192-355 59-195 (205)
99 3mq2_A 16S rRNA methyltransfer 99.5 7E-14 2.4E-18 119.9 7.2 142 191-345 25-184 (218)
100 1dus_A MJ0882; hypothetical pr 99.5 6.7E-13 2.3E-17 111.1 12.6 141 182-356 42-193 (194)
101 3orh_A Guanidinoacetate N-meth 99.4 4.8E-14 1.7E-18 122.5 5.1 133 192-342 59-207 (236)
102 3p2e_A 16S rRNA methylase; met 99.4 6.1E-13 2.1E-17 114.6 11.3 146 192-346 23-186 (225)
103 2vdw_A Vaccinia virus capping 99.4 5.2E-13 1.8E-17 120.1 10.7 152 193-345 48-246 (302)
104 4dzr_A Protein-(glutamine-N5) 99.4 1.5E-13 5E-18 117.2 6.3 138 181-347 18-194 (215)
105 3htx_A HEN1; HEN1, small RNA m 99.4 1.4E-12 4.8E-17 128.4 13.7 109 182-292 711-836 (950)
106 3iv6_A Putative Zn-dependent a 99.4 3.2E-13 1.1E-17 118.3 8.0 107 181-291 34-149 (261)
107 3bgv_A MRNA CAP guanine-N7 met 99.4 5.9E-13 2E-17 120.6 8.8 99 192-291 33-156 (313)
108 1af7_A Chemotaxis receptor met 99.4 3.6E-13 1.2E-17 119.0 7.1 96 193-288 105-250 (274)
109 3hm2_A Precorrin-6Y C5,15-meth 99.4 1E-12 3.6E-17 108.5 9.4 102 182-291 15-128 (178)
110 1zx0_A Guanidinoacetate N-meth 99.4 3E-13 1E-17 117.5 5.8 100 192-292 59-172 (236)
111 4df3_A Fibrillarin-like rRNA/T 99.4 2.5E-12 8.6E-17 110.3 10.7 133 191-347 75-219 (233)
112 3fzg_A 16S rRNA methylase; met 99.4 1.2E-12 4.1E-17 107.4 8.0 97 192-290 48-152 (200)
113 2pxx_A Uncharacterized protein 99.4 1.1E-12 3.7E-17 111.8 7.9 101 192-293 41-162 (215)
114 3njr_A Precorrin-6Y methylase; 99.3 1.5E-11 5E-16 104.3 14.2 122 183-343 46-178 (204)
115 1nt2_A Fibrillarin-like PRE-rR 99.3 9.5E-12 3.2E-16 105.9 12.6 137 191-356 55-209 (210)
116 2nxc_A L11 mtase, ribosomal pr 99.3 1.8E-12 6.1E-17 113.8 8.1 128 192-356 119-254 (254)
117 3mb5_A SAM-dependent methyltra 99.3 2.1E-12 7.1E-17 113.4 8.4 128 181-345 82-222 (255)
118 3m33_A Uncharacterized protein 99.3 9.8E-13 3.4E-17 113.4 6.0 114 192-345 47-167 (226)
119 3mti_A RRNA methylase; SAM-dep 99.3 3.2E-12 1.1E-16 106.5 8.8 133 191-346 20-170 (185)
120 1yzh_A TRNA (guanine-N(7)-)-me 99.3 7.9E-12 2.7E-16 106.7 11.5 98 193-290 41-156 (214)
121 2ipx_A RRNA 2'-O-methyltransfe 99.3 4.2E-12 1.4E-16 109.9 9.3 141 191-355 75-230 (233)
122 1yb2_A Hypothetical protein TA 99.3 1.1E-12 3.7E-17 116.7 5.4 125 183-344 101-236 (275)
123 1l3i_A Precorrin-6Y methyltran 99.3 4.5E-12 1.6E-16 105.8 8.6 121 183-340 24-155 (192)
124 3fpf_A Mtnas, putative unchara 99.3 9.4E-12 3.2E-16 110.1 10.9 96 191-291 120-223 (298)
125 3evz_A Methyltransferase; NYSG 99.3 8.5E-12 2.9E-16 107.7 10.4 128 191-347 53-208 (230)
126 3eey_A Putative rRNA methylase 99.3 3E-12 1E-16 107.8 7.1 103 191-293 20-142 (197)
127 1xdz_A Methyltransferase GIDB; 99.3 3.6E-12 1.2E-16 110.9 7.7 120 192-344 69-201 (240)
128 1g8a_A Fibrillarin-like PRE-rR 99.3 1.9E-11 6.6E-16 105.2 12.1 141 191-356 71-226 (227)
129 2ld4_A Anamorsin; methyltransf 99.3 4.1E-12 1.4E-16 105.0 6.8 109 191-337 10-128 (176)
130 2avn_A Ubiquinone/menaquinone 99.3 5.9E-12 2E-16 110.9 7.9 97 193-292 54-154 (260)
131 3bwc_A Spermidine synthase; SA 99.3 1E-11 3.4E-16 111.9 9.5 129 192-345 94-240 (304)
132 3id6_C Fibrillarin-like rRNA/T 99.3 5E-11 1.7E-15 102.5 13.4 150 182-355 63-229 (232)
133 4dcm_A Ribosomal RNA large sub 99.3 7.2E-12 2.4E-16 116.0 8.5 107 183-290 213-334 (375)
134 2h00_A Methyltransferase 10 do 99.3 5.3E-13 1.8E-17 117.2 0.4 145 193-346 65-239 (254)
135 1u2z_A Histone-lysine N-methyl 99.3 2.7E-11 9.2E-16 113.3 11.8 113 180-296 230-365 (433)
136 3lpm_A Putative methyltransfer 99.3 2.1E-11 7.3E-16 107.3 10.5 135 191-356 46-218 (259)
137 2pwy_A TRNA (adenine-N(1)-)-me 99.3 1.1E-11 3.8E-16 108.8 8.6 127 181-344 85-223 (258)
138 2pjd_A Ribosomal RNA small sub 99.3 4.2E-12 1.4E-16 116.4 6.0 110 182-292 186-305 (343)
139 2plw_A Ribosomal RNA methyltra 99.3 4.1E-11 1.4E-15 101.0 11.6 106 181-290 10-154 (201)
140 2fca_A TRNA (guanine-N(7)-)-me 99.2 1.4E-11 4.8E-16 105.1 8.6 98 193-290 38-153 (213)
141 3dxy_A TRNA (guanine-N(7)-)-me 99.2 6.3E-12 2.2E-16 107.7 6.0 98 193-290 34-150 (218)
142 2yxd_A Probable cobalt-precorr 99.2 2.5E-11 8.7E-16 100.4 9.5 121 182-342 25-154 (183)
143 2y1w_A Histone-arginine methyl 99.2 8.9E-12 3E-16 114.5 7.0 106 182-289 40-154 (348)
144 3g89_A Ribosomal RNA small sub 99.2 9E-12 3.1E-16 108.9 6.3 121 192-345 79-212 (249)
145 3hp7_A Hemolysin, putative; st 99.2 7.8E-11 2.7E-15 104.4 12.1 150 181-346 73-233 (291)
146 1o9g_A RRNA methyltransferase; 99.2 3.5E-11 1.2E-15 105.2 9.7 109 183-292 42-216 (250)
147 1ej0_A FTSJ; methyltransferase 99.2 4.5E-11 1.5E-15 98.2 9.7 107 182-292 11-138 (180)
148 3lbf_A Protein-L-isoaspartate 99.2 2.2E-11 7.6E-16 103.5 7.7 100 182-292 67-176 (210)
149 3kr9_A SAM-dependent methyltra 99.2 7E-11 2.4E-15 100.8 10.7 117 192-343 14-141 (225)
150 3opn_A Putative hemolysin; str 99.2 1.9E-11 6.3E-16 105.6 7.0 143 181-346 25-185 (232)
151 2fyt_A Protein arginine N-meth 99.2 4.9E-11 1.7E-15 109.1 10.1 101 183-287 55-168 (340)
152 3b3j_A Histone-arginine methyl 99.2 1.4E-11 4.8E-16 117.5 6.5 106 181-288 147-261 (480)
153 1o54_A SAM-dependent O-methylt 99.2 2.7E-11 9.4E-16 107.6 8.0 103 181-291 101-214 (277)
154 2yxe_A Protein-L-isoaspartate 99.2 3.1E-11 1.1E-15 102.9 7.9 101 182-291 67-178 (215)
155 3duw_A OMT, O-methyltransferas 99.2 2.6E-11 9E-16 104.0 7.4 99 191-294 56-171 (223)
156 3lcv_B Sisomicin-gentamicin re 99.2 1.6E-11 5.4E-16 105.5 5.7 134 192-345 131-272 (281)
157 3p9n_A Possible methyltransfer 99.2 9.5E-11 3.2E-15 97.9 10.2 100 192-293 43-156 (189)
158 3tfw_A Putative O-methyltransf 99.2 4.6E-11 1.6E-15 104.4 8.6 98 191-293 61-173 (248)
159 1jg1_A PIMT;, protein-L-isoasp 99.2 2E-11 6.9E-16 105.8 6.2 103 179-291 78-190 (235)
160 3ckk_A TRNA (guanine-N(7)-)-me 99.2 5E-11 1.7E-15 103.2 8.6 99 192-290 45-168 (235)
161 3u81_A Catechol O-methyltransf 99.2 3.7E-11 1.3E-15 103.1 7.7 99 192-293 57-173 (221)
162 3lec_A NADB-rossmann superfami 99.2 1.3E-10 4.5E-15 99.3 10.7 129 192-355 20-162 (230)
163 1jsx_A Glucose-inhibited divis 99.2 2.4E-11 8.2E-16 103.0 6.0 91 193-289 65-164 (207)
164 2frn_A Hypothetical protein PH 99.2 8.6E-11 2.9E-15 104.5 9.8 120 192-341 124-253 (278)
165 3ntv_A MW1564 protein; rossman 99.2 1.9E-11 6.4E-16 105.8 5.1 98 191-293 69-179 (232)
166 3q7e_A Protein arginine N-meth 99.1 4.1E-11 1.4E-15 110.1 6.8 96 192-288 65-171 (349)
167 3sso_A Methyltransferase; macr 99.1 3.1E-11 1.1E-15 110.6 5.5 104 181-292 206-326 (419)
168 3gnl_A Uncharacterized protein 99.1 1.9E-10 6.4E-15 99.1 10.1 117 192-343 20-147 (244)
169 1vbf_A 231AA long hypothetical 99.1 8.5E-11 2.9E-15 101.4 8.0 102 180-292 58-167 (231)
170 2bm8_A Cephalosporin hydroxyla 99.1 1.2E-10 4E-15 101.0 8.7 94 193-291 81-188 (236)
171 1dl5_A Protein-L-isoaspartate 99.1 7.7E-11 2.6E-15 106.8 7.5 103 181-292 64-177 (317)
172 1p91_A Ribosomal RNA large sub 99.1 1.8E-10 6.1E-15 101.8 9.7 93 192-293 84-181 (269)
173 3r0q_C Probable protein argini 99.1 7.6E-11 2.6E-15 109.4 7.5 101 191-292 61-171 (376)
174 3dmg_A Probable ribosomal RNA 99.1 2.1E-10 7.2E-15 106.3 10.2 96 193-290 233-340 (381)
175 2ozv_A Hypothetical protein AT 99.1 9.8E-11 3.4E-15 103.0 7.6 100 191-290 34-170 (260)
176 3gjy_A Spermidine synthase; AP 99.1 1E-10 3.5E-15 104.8 7.6 98 194-291 90-201 (317)
177 2gpy_A O-methyltransferase; st 99.1 5.8E-11 2E-15 102.7 5.8 97 192-293 53-163 (233)
178 3r3h_A O-methyltransferase, SA 99.1 8E-11 2.7E-15 102.4 6.2 98 193-295 60-175 (242)
179 3adn_A Spermidine synthase; am 99.1 1.4E-10 4.9E-15 103.6 7.7 99 192-290 82-198 (294)
180 3tr6_A O-methyltransferase; ce 99.1 3.3E-11 1.1E-15 103.6 3.4 98 192-294 63-178 (225)
181 3dou_A Ribosomal RNA large sub 99.1 3.8E-10 1.3E-14 94.5 9.3 105 180-290 12-139 (191)
182 2nyu_A Putative ribosomal RNA 99.1 3.8E-10 1.3E-14 94.6 9.1 105 183-291 12-146 (196)
183 2vdv_E TRNA (guanine-N(7)-)-me 99.1 1E-10 3.4E-15 102.1 5.6 94 191-289 47-172 (246)
184 1nv8_A HEMK protein; class I a 99.1 3.6E-10 1.2E-14 100.7 9.2 94 193-288 123-247 (284)
185 1g6q_1 HnRNP arginine N-methyl 99.1 2.1E-10 7.1E-15 104.4 7.8 97 191-288 36-143 (328)
186 3dr5_A Putative O-methyltransf 99.1 1.4E-10 4.7E-15 99.5 5.9 95 194-293 57-166 (221)
187 3bzb_A Uncharacterized protein 99.1 1E-09 3.6E-14 97.6 11.7 96 191-289 77-204 (281)
188 2esr_A Methyltransferase; stru 99.0 1.3E-10 4.4E-15 95.9 5.2 106 184-293 22-141 (177)
189 3c3p_A Methyltransferase; NP_9 99.0 1.1E-10 3.7E-15 99.3 4.5 97 193-294 56-164 (210)
190 2fhp_A Methylase, putative; al 99.0 2.3E-10 7.8E-15 95.1 5.8 107 183-293 34-157 (187)
191 1ixk_A Methyltransferase; open 99.0 7.2E-10 2.5E-14 100.2 9.2 107 186-293 112-249 (315)
192 1sui_A Caffeoyl-COA O-methyltr 99.0 1.7E-10 5.6E-15 100.8 4.8 97 192-293 78-193 (247)
193 2hnk_A SAM-dependent O-methylt 99.0 1.8E-10 6E-15 100.1 4.9 98 191-293 58-184 (239)
194 1r18_A Protein-L-isoaspartate( 99.0 3.2E-10 1.1E-14 97.6 6.4 102 182-291 72-195 (227)
195 3frh_A 16S rRNA methylase; met 99.0 6.3E-10 2.1E-14 94.7 7.6 95 192-290 104-206 (253)
196 3tma_A Methyltransferase; thum 99.0 9.2E-10 3.2E-14 101.3 9.4 112 178-290 189-317 (354)
197 1i9g_A Hypothetical protein RV 99.0 5.4E-10 1.8E-14 99.3 7.5 105 180-292 87-205 (280)
198 2yvl_A TRMI protein, hypotheti 99.0 1.7E-09 5.7E-14 94.1 10.4 101 182-292 81-192 (248)
199 2oxt_A Nucleoside-2'-O-methylt 99.0 8.4E-10 2.9E-14 97.1 8.5 106 182-292 64-187 (265)
200 2pbf_A Protein-L-isoaspartate 99.0 6.2E-10 2.1E-14 95.7 7.1 93 191-291 78-194 (227)
201 1ws6_A Methyltransferase; stru 99.0 2.4E-10 8.1E-15 93.5 3.7 95 193-293 41-150 (171)
202 2p41_A Type II methyltransfera 99.0 1.6E-09 5.3E-14 97.4 9.2 96 191-289 80-190 (305)
203 2wa2_A Non-structural protein 99.0 8.4E-10 2.9E-14 97.6 7.4 105 182-291 72-194 (276)
204 1i1n_A Protein-L-isoaspartate 99.0 1.5E-09 5.1E-14 93.2 8.8 94 191-292 75-184 (226)
205 2avd_A Catechol-O-methyltransf 99.0 3.1E-10 1.1E-14 97.7 3.9 98 191-293 67-182 (229)
206 2ift_A Putative methylase HI07 98.9 2.7E-10 9.2E-15 96.2 3.2 97 193-293 53-166 (201)
207 3c3y_A Pfomt, O-methyltransfer 98.9 4.2E-10 1.4E-14 97.6 4.5 97 192-293 69-184 (237)
208 3cbg_A O-methyltransferase; cy 98.9 3E-10 1E-14 98.1 3.4 97 193-294 72-186 (232)
209 3gdh_A Trimethylguanosine synt 98.9 2.3E-11 7.9E-16 105.7 -3.8 133 193-346 78-220 (241)
210 2i7c_A Spermidine synthase; tr 98.9 4.9E-10 1.7E-14 99.8 4.6 98 192-289 77-191 (283)
211 1xj5_A Spermidine synthase 1; 98.9 5.3E-10 1.8E-14 101.6 4.8 98 192-289 119-234 (334)
212 1zq9_A Probable dimethyladenos 98.9 8.7E-10 3E-14 98.2 6.1 104 180-287 16-144 (285)
213 1uir_A Polyamine aminopropyltr 98.9 5.7E-10 2E-14 100.8 4.7 99 192-290 76-195 (314)
214 2b25_A Hypothetical protein; s 98.9 1.9E-09 6.6E-14 98.4 8.2 104 181-292 94-221 (336)
215 2fpo_A Methylase YHHF; structu 98.9 9.4E-10 3.2E-14 92.9 5.6 96 193-292 54-162 (202)
216 2o07_A Spermidine synthase; st 98.9 5.7E-10 1.9E-14 100.3 4.2 99 192-290 94-209 (304)
217 1iy9_A Spermidine synthase; ro 98.9 5.9E-10 2E-14 98.8 4.2 97 193-289 75-188 (275)
218 2b2c_A Spermidine synthase; be 98.9 5.7E-10 2E-14 100.6 3.9 99 192-290 107-222 (314)
219 2pt6_A Spermidine synthase; tr 98.9 7.4E-10 2.5E-14 100.3 4.3 98 192-289 115-229 (321)
220 1mjf_A Spermidine synthase; sp 98.9 1.2E-09 3.9E-14 97.2 5.5 97 192-289 74-192 (281)
221 1ne2_A Hypothetical protein TA 98.9 5.5E-09 1.9E-13 87.9 9.0 88 191-280 49-139 (200)
222 4azs_A Methyltransferase WBDD; 98.9 6.9E-10 2.4E-14 108.4 3.8 101 192-294 65-177 (569)
223 3a27_A TYW2, uncharacterized p 98.9 1.2E-09 4E-14 96.8 4.5 97 191-293 117-222 (272)
224 1inl_A Spermidine synthase; be 98.8 1.2E-09 4.1E-14 97.8 4.0 97 193-289 90-204 (296)
225 4hc4_A Protein arginine N-meth 98.8 2.4E-09 8.3E-14 98.4 6.0 95 193-288 83-187 (376)
226 2yxl_A PH0851 protein, 450AA l 98.8 8E-09 2.7E-13 98.0 9.5 109 185-294 252-393 (450)
227 2cmg_A Spermidine synthase; tr 98.8 6E-09 2.1E-13 91.5 7.1 89 192-289 71-170 (262)
228 3tm4_A TRNA (guanine N2-)-meth 98.8 1.7E-08 5.7E-13 93.5 10.2 131 180-346 206-353 (373)
229 1qam_A ERMC' methyltransferase 98.8 8.1E-09 2.8E-13 89.8 7.1 105 180-287 18-143 (244)
230 3ajd_A Putative methyltransfer 98.8 4.9E-09 1.7E-13 92.8 5.5 103 191-293 81-214 (274)
231 2f8l_A Hypothetical protein LM 98.8 9E-09 3.1E-13 94.3 7.0 100 192-291 129-257 (344)
232 2xyq_A Putative 2'-O-methyl tr 98.8 1.4E-08 4.7E-13 90.1 7.7 115 191-343 61-195 (290)
233 1yub_A Ermam, rRNA methyltrans 98.7 2.7E-09 9.3E-14 92.9 2.5 106 182-290 19-145 (245)
234 2ih2_A Modification methylase 98.7 2.5E-08 8.5E-13 93.8 8.9 106 182-291 29-165 (421)
235 2h1r_A Dimethyladenosine trans 98.7 2.7E-08 9.2E-13 89.2 8.2 101 180-284 30-153 (299)
236 3b5i_A S-adenosyl-L-methionine 98.7 3.9E-07 1.3E-11 83.5 15.8 152 194-345 53-298 (374)
237 1sqg_A SUN protein, FMU protei 98.7 1.9E-08 6.5E-13 94.9 7.0 109 184-293 238-377 (429)
238 2igt_A SAM dependent methyltra 98.7 2.4E-08 8.2E-13 90.7 7.2 95 193-291 153-273 (332)
239 1wy7_A Hypothetical protein PH 98.7 1.2E-07 4E-12 80.0 10.6 89 191-280 47-141 (207)
240 2frx_A Hypothetical protein YE 98.7 6.1E-08 2.1E-12 92.3 9.5 101 193-293 117-249 (479)
241 3k6r_A Putative transferase PH 98.7 3.8E-08 1.3E-12 86.7 7.3 120 191-340 123-252 (278)
242 3m6w_A RRNA methylase; rRNA me 98.6 1.7E-08 5.7E-13 95.3 4.4 102 191-293 99-232 (464)
243 1uwv_A 23S rRNA (uracil-5-)-me 98.5 1.1E-06 3.9E-11 82.8 12.8 99 181-288 275-387 (433)
244 1rjd_A PPM1P, carboxy methyl t 98.5 1.3E-06 4.4E-11 79.2 12.5 142 192-338 96-281 (334)
245 3ftd_A Dimethyladenosine trans 98.5 4.6E-07 1.6E-11 78.8 9.0 92 180-273 19-116 (249)
246 2efj_A 3,7-dimethylxanthine me 98.5 2E-06 6.7E-11 79.0 13.5 151 194-344 53-291 (384)
247 3k0b_A Predicted N6-adenine-sp 98.5 2.8E-07 9.6E-12 85.6 7.6 114 177-291 186-351 (393)
248 2okc_A Type I restriction enzy 98.4 1.2E-07 3.9E-12 89.9 5.0 111 180-291 159-308 (445)
249 3gru_A Dimethyladenosine trans 98.4 3.4E-07 1.1E-11 81.5 7.6 90 180-273 38-135 (295)
250 3ldg_A Putative uncharacterize 98.4 8E-07 2.7E-11 82.1 10.0 114 177-291 179-344 (384)
251 1wxx_A TT1595, hypothetical pr 98.4 1.2E-07 4E-12 88.1 4.4 97 193-291 209-326 (382)
252 4dmg_A Putative uncharacterize 98.4 6E-07 2.1E-11 83.3 8.8 99 192-292 213-328 (393)
253 2as0_A Hypothetical protein PH 98.4 1.5E-07 5E-12 87.9 4.5 99 193-292 217-337 (396)
254 3m4x_A NOL1/NOP2/SUN family pr 98.4 1.1E-07 3.8E-12 89.6 3.6 103 191-293 103-237 (456)
255 1m6e_X S-adenosyl-L-methionnin 98.4 4.9E-06 1.7E-10 75.7 14.3 152 192-343 50-278 (359)
256 2b78_A Hypothetical protein SM 98.4 1.5E-07 5E-12 87.4 4.2 99 192-291 211-332 (385)
257 4gqb_A Protein arginine N-meth 98.4 3.1E-07 1.1E-11 89.4 5.8 125 156-287 324-464 (637)
258 3fut_A Dimethyladenosine trans 98.4 7.6E-07 2.6E-11 78.2 7.6 90 181-275 36-133 (271)
259 2yx1_A Hypothetical protein MJ 98.4 2.5E-07 8.7E-12 84.2 4.7 92 192-292 194-293 (336)
260 3ldu_A Putative methylase; str 98.3 6.8E-07 2.3E-11 82.8 7.2 113 178-291 181-345 (385)
261 3c0k_A UPF0064 protein YCCW; P 98.3 7E-07 2.4E-11 83.2 6.2 97 193-291 220-340 (396)
262 3v97_A Ribosomal RNA large sub 98.3 7.3E-07 2.5E-11 88.9 6.6 98 193-291 539-658 (703)
263 1qyr_A KSGA, high level kasuga 98.3 1.1E-06 3.7E-11 76.5 6.7 91 180-273 9-111 (252)
264 2qfm_A Spermine synthase; sper 98.3 5.3E-07 1.8E-11 81.8 4.6 97 193-290 188-314 (364)
265 3evf_A RNA-directed RNA polyme 98.3 3.6E-06 1.2E-10 72.8 9.5 112 180-293 62-186 (277)
266 3uzu_A Ribosomal RNA small sub 98.3 3.6E-07 1.2E-11 80.7 3.3 69 181-250 31-105 (279)
267 3ua3_A Protein arginine N-meth 98.2 1.5E-06 5.2E-11 84.6 7.5 125 156-287 379-531 (745)
268 3o4f_A Spermidine synthase; am 98.2 1.2E-06 4.3E-11 77.2 5.9 99 192-290 82-198 (294)
269 3tqs_A Ribosomal RNA small sub 98.2 1.2E-06 4E-11 76.4 5.7 68 180-250 17-90 (255)
270 2jjq_A Uncharacterized RNA met 98.2 2.4E-06 8.1E-11 80.1 7.7 90 192-289 289-386 (425)
271 1m6y_A S-adenosyl-methyltransf 98.0 5.4E-06 1.9E-10 73.9 5.2 77 182-259 16-106 (301)
272 3gcz_A Polyprotein; flavivirus 97.9 1.4E-05 4.9E-10 69.2 6.4 109 179-288 77-199 (282)
273 2b9e_A NOL1/NOP2/SUN domain fa 97.9 3.1E-05 1.1E-09 69.3 8.6 102 191-293 100-237 (309)
274 3iei_A Leucine carboxyl methyl 97.9 0.00035 1.2E-08 62.9 15.5 145 193-345 90-281 (334)
275 3v97_A Ribosomal RNA large sub 97.9 2.2E-05 7.6E-10 78.2 8.2 113 178-291 176-348 (703)
276 3bt7_A TRNA (uracil-5-)-methyl 97.9 2.5E-06 8.5E-11 78.7 1.1 98 182-291 204-327 (369)
277 2r6z_A UPF0341 protein in RSP 97.9 1.9E-05 6.5E-10 68.8 6.5 99 191-293 81-219 (258)
278 2qy6_A UPF0209 protein YFCK; s 97.8 1.9E-05 6.4E-10 68.8 5.9 96 193-288 60-211 (257)
279 2dul_A N(2),N(2)-dimethylguano 97.8 1.6E-05 5.5E-10 73.3 4.8 92 193-290 47-164 (378)
280 2ar0_A M.ecoki, type I restric 97.7 2.3E-05 7.7E-10 75.8 5.0 110 181-291 158-313 (541)
281 2vz8_A Fatty acid synthase; tr 97.7 1.1E-05 3.8E-10 90.7 2.2 142 193-344 1240-1394(2512)
282 4auk_A Ribosomal RNA large sub 97.7 0.00013 4.6E-09 66.0 8.8 95 191-290 209-306 (375)
283 3axs_A Probable N(2),N(2)-dime 97.6 1.9E-05 6.6E-10 72.8 3.0 92 193-290 52-158 (392)
284 3eld_A Methyltransferase; flav 97.5 0.00042 1.4E-08 60.4 9.8 108 180-289 69-190 (300)
285 3khk_A Type I restriction-modi 97.5 6.7E-05 2.3E-09 72.4 4.3 109 180-290 233-395 (544)
286 3s1s_A Restriction endonucleas 97.4 0.00036 1.2E-08 69.3 8.7 100 192-291 320-466 (878)
287 3p8z_A Mtase, non-structural p 97.4 0.0005 1.7E-08 57.8 8.0 113 179-294 65-189 (267)
288 2wk1_A NOVP; transferase, O-me 97.4 0.00049 1.7E-08 60.4 8.2 95 192-290 105-244 (282)
289 3c6k_A Spermine synthase; sper 97.3 0.00013 4.6E-09 66.3 4.3 96 193-289 205-330 (381)
290 2oyr_A UPF0341 protein YHIQ; a 97.3 6.7E-05 2.3E-09 65.2 2.2 76 185-263 79-176 (258)
291 2px2_A Genome polyprotein [con 97.3 0.001 3.4E-08 56.8 9.3 106 180-288 61-181 (269)
292 3lkd_A Type I restriction-modi 97.3 0.00068 2.3E-08 65.3 9.1 99 193-291 221-359 (542)
293 3b73_A PHIH1 repressor-like pr 97.3 0.00034 1.2E-08 52.2 5.2 64 35-111 15-80 (111)
294 3cvo_A Methyltransferase-like 97.3 0.00095 3.3E-08 55.5 8.2 88 193-290 30-154 (202)
295 3lkz_A Non-structural protein 97.2 0.0015 5.3E-08 56.7 9.5 108 179-288 81-202 (321)
296 2k4m_A TR8_protein, UPF0146 pr 97.2 0.00037 1.3E-08 54.2 5.1 84 193-293 35-124 (153)
297 2uyo_A Hypothetical protein ML 97.2 0.0024 8.1E-08 57.0 11.1 144 193-340 102-274 (310)
298 3cuo_A Uncharacterized HTH-typ 97.1 0.00063 2.2E-08 49.5 4.7 62 33-104 24-85 (99)
299 3ll7_A Putative methyltransfer 97.0 0.00036 1.2E-08 64.6 3.7 63 193-257 93-169 (410)
300 1qbj_A Protein (double-strande 97.0 0.00093 3.2E-08 46.7 4.8 64 34-105 11-74 (81)
301 2heo_A Z-DNA binding protein 1 96.9 0.00052 1.8E-08 46.3 2.9 55 35-101 12-66 (67)
302 1wg8_A Predicted S-adenosylmet 96.9 0.001 3.5E-08 57.9 5.5 64 181-247 11-77 (285)
303 2zwa_A Leucine carboxyl methyl 96.9 0.0083 2.8E-07 59.8 12.5 147 193-345 107-309 (695)
304 1xmk_A Double-stranded RNA-spe 96.9 0.00099 3.4E-08 46.2 4.1 61 35-105 13-73 (79)
305 1y0u_A Arsenical resistance op 96.9 0.00089 3.1E-08 48.6 4.1 61 29-105 27-87 (96)
306 2zkz_A Transcriptional repress 96.8 0.00073 2.5E-08 49.4 3.0 87 1-104 1-87 (99)
307 2kko_A Possible transcriptiona 96.8 0.00077 2.6E-08 50.2 3.0 59 34-103 26-84 (108)
308 1qgp_A Protein (double strande 96.7 0.00098 3.3E-08 46.2 3.3 61 34-102 15-75 (77)
309 1r1u_A CZRA, repressor protein 96.7 0.002 6.9E-08 47.6 5.0 60 32-102 25-84 (106)
310 3pqk_A Biofilm growth-associat 96.7 0.0015 5.3E-08 47.9 4.0 59 33-102 23-81 (102)
311 3f6o_A Probable transcriptiona 96.6 0.0015 5.1E-08 49.4 3.7 66 28-104 13-78 (118)
312 3jth_A Transcription activator 96.6 0.0013 4.4E-08 47.9 3.0 63 30-103 20-82 (98)
313 3df8_A Possible HXLR family tr 96.6 0.003 1E-07 47.2 5.1 75 13-108 16-93 (111)
314 1ub9_A Hypothetical protein PH 96.5 0.002 6.8E-08 46.8 3.6 68 28-105 11-81 (100)
315 1u2w_A CADC repressor, cadmium 96.5 0.0024 8.3E-08 48.5 4.1 66 28-103 37-102 (122)
316 2oqg_A Possible transcriptiona 96.3 0.0033 1.1E-07 46.9 4.2 61 34-105 22-82 (114)
317 4fzv_A Putative methyltransfer 96.3 0.0047 1.6E-07 56.1 5.7 105 191-295 146-289 (359)
318 3f6v_A Possible transcriptiona 96.3 0.0031 1.1E-07 49.9 3.9 68 27-105 52-119 (151)
319 3tka_A Ribosomal RNA small sub 96.3 0.0069 2.3E-07 54.0 6.4 67 180-247 45-115 (347)
320 1tbx_A ORF F-93, hypothetical 96.2 0.0052 1.8E-07 44.6 4.7 63 36-108 11-77 (99)
321 2jsc_A Transcriptional regulat 96.2 0.0034 1.2E-07 47.4 3.4 60 33-103 21-80 (118)
322 2hzt_A Putative HTH-type trans 96.1 0.0087 3E-07 44.2 5.4 52 49-107 26-81 (107)
323 4a5n_A Uncharacterized HTH-typ 96.1 0.011 3.8E-07 45.4 5.9 76 13-108 15-94 (131)
324 1z7u_A Hypothetical protein EF 96.1 0.0094 3.2E-07 44.5 5.4 60 38-108 27-90 (112)
325 2gxg_A 146AA long hypothetical 96.0 0.045 1.5E-06 42.3 9.7 64 34-108 38-104 (146)
326 3mq0_A Transcriptional repress 96.0 0.0039 1.3E-07 54.6 3.7 57 36-104 33-89 (275)
327 1oyi_A Double-stranded RNA-bin 95.9 0.007 2.4E-07 42.0 3.8 58 34-103 18-75 (82)
328 2y75_A HTH-type transcriptiona 95.9 0.0082 2.8E-07 46.0 4.6 46 49-102 25-70 (129)
329 2htj_A P fimbrial regulatory p 95.9 0.0094 3.2E-07 41.5 4.6 43 37-89 4-46 (81)
330 3f3x_A Transcriptional regulat 95.9 0.026 9E-07 43.7 7.6 64 34-108 38-104 (144)
331 1r1t_A Transcriptional repress 95.9 0.0068 2.3E-07 46.0 3.8 60 33-103 46-105 (122)
332 1i4w_A Mitochondrial replicati 95.8 0.014 4.6E-07 52.9 6.3 97 179-276 39-166 (353)
333 2fsw_A PG_0823 protein; alpha- 95.8 0.012 4.2E-07 43.4 5.0 76 13-108 14-93 (107)
334 3k0l_A Repressor protein; heli 95.7 0.049 1.7E-06 43.2 8.8 64 35-108 48-114 (162)
335 1yyv_A Putative transcriptiona 95.7 0.015 5.2E-07 44.7 5.3 76 13-108 24-103 (131)
336 3ech_A MEXR, multidrug resista 95.7 0.026 8.8E-07 43.7 6.7 66 33-108 37-105 (142)
337 3bdd_A Regulatory protein MARR 95.7 0.027 9.3E-07 43.4 6.8 65 34-108 32-99 (142)
338 1on2_A Transcriptional regulat 95.6 0.014 4.7E-07 45.4 5.0 50 49-108 21-70 (142)
339 3cdh_A Transcriptional regulat 95.6 0.061 2.1E-06 42.2 8.9 64 35-108 45-111 (155)
340 1xn7_A Hypothetical protein YH 95.6 0.014 4.9E-07 40.3 4.4 43 38-90 7-49 (78)
341 3r24_A NSP16, 2'-O-methyl tran 95.6 0.011 3.9E-07 51.3 4.5 91 191-288 107-215 (344)
342 1r7j_A Conserved hypothetical 95.5 0.018 6E-07 41.5 4.8 47 51-108 21-67 (95)
343 2k02_A Ferrous iron transport 95.5 0.014 4.9E-07 41.1 4.2 43 38-90 7-49 (87)
344 2qww_A Transcriptional regulat 95.5 0.086 2.9E-06 41.2 9.3 65 34-108 42-111 (154)
345 1mkm_A ICLR transcriptional re 95.5 0.016 5.5E-07 49.9 5.3 57 36-104 11-67 (249)
346 2nnn_A Probable transcriptiona 95.5 0.017 5.7E-07 44.5 4.9 65 34-108 39-106 (140)
347 2hr3_A Probable transcriptiona 95.5 0.023 7.7E-07 44.2 5.7 66 33-108 35-104 (147)
348 2nyx_A Probable transcriptiona 95.5 0.068 2.3E-06 42.7 8.7 65 34-108 46-113 (168)
349 1jgs_A Multiple antibiotic res 95.4 0.018 6E-07 44.3 4.9 64 35-108 36-102 (138)
350 3fm5_A Transcriptional regulat 95.4 0.03 1E-06 43.7 6.3 66 34-108 40-108 (150)
351 2jt1_A PEFI protein; solution 95.4 0.013 4.3E-07 40.4 3.4 35 49-90 23-57 (77)
352 3bpv_A Transcriptional regulat 95.4 0.017 5.8E-07 44.3 4.7 65 34-108 30-97 (138)
353 3bja_A Transcriptional regulat 95.4 0.016 5.6E-07 44.5 4.6 65 34-108 34-101 (139)
354 3g3z_A NMB1585, transcriptiona 95.3 0.019 6.4E-07 44.6 4.9 65 34-108 32-99 (145)
355 2xrn_A HTH-type transcriptiona 95.3 0.012 4E-07 50.5 4.0 59 36-105 9-67 (241)
356 2rdp_A Putative transcriptiona 95.3 0.11 3.7E-06 40.4 9.3 64 35-108 44-110 (150)
357 3lwf_A LIN1550 protein, putati 95.3 0.018 6.3E-07 45.8 4.7 46 49-102 43-88 (159)
358 3t8r_A Staphylococcus aureus C 95.3 0.015 5.1E-07 45.5 4.1 46 49-102 27-72 (143)
359 3boq_A Transcriptional regulat 95.2 0.044 1.5E-06 43.3 6.8 65 34-108 48-116 (160)
360 3ufb_A Type I restriction-modi 95.2 0.067 2.3E-06 51.3 9.2 111 180-291 205-363 (530)
361 3r4k_A Transcriptional regulat 95.2 0.0061 2.1E-07 52.9 1.7 58 36-104 9-66 (260)
362 1s3j_A YUSO protein; structura 95.2 0.1 3.5E-06 40.7 8.8 64 35-108 39-105 (155)
363 2fbi_A Probable transcriptiona 95.1 0.019 6.4E-07 44.3 4.2 65 34-108 37-104 (142)
364 2wte_A CSA3; antiviral protein 95.1 0.022 7.6E-07 48.8 4.9 63 34-108 153-215 (244)
365 3oop_A LIN2960 protein; protei 95.1 0.016 5.4E-07 44.9 3.6 65 34-108 38-105 (143)
366 1lj9_A Transcriptional regulat 95.0 0.025 8.5E-07 43.8 4.6 64 35-108 31-97 (144)
367 2f2e_A PA1607; transcription f 95.0 0.034 1.2E-06 43.6 5.4 53 49-108 36-90 (146)
368 2fbh_A Transcriptional regulat 95.0 0.025 8.5E-07 43.8 4.6 64 35-108 39-106 (146)
369 2eth_A Transcriptional regulat 95.0 0.034 1.2E-06 43.7 5.3 65 34-108 45-112 (154)
370 2a61_A Transcriptional regulat 95.0 0.025 8.6E-07 43.8 4.5 65 34-108 34-101 (145)
371 3kp7_A Transcriptional regulat 94.9 0.11 3.7E-06 40.5 8.1 63 35-108 40-107 (151)
372 2o0y_A Transcriptional regulat 94.9 0.016 5.5E-07 50.2 3.5 56 37-104 27-82 (260)
373 3nrv_A Putative transcriptiona 94.8 0.03 1E-06 43.6 4.6 65 34-108 41-108 (148)
374 2pg4_A Uncharacterized protein 94.7 0.041 1.4E-06 39.4 4.8 62 38-108 20-83 (95)
375 3s2w_A Transcriptional regulat 94.7 0.13 4.6E-06 40.4 8.3 63 36-108 53-118 (159)
376 4hbl_A Transcriptional regulat 94.7 0.019 6.4E-07 45.0 3.1 65 34-108 42-109 (149)
377 3e6m_A MARR family transcripti 94.7 0.12 4E-06 40.8 7.9 65 34-108 54-121 (161)
378 3cjn_A Transcriptional regulat 94.7 0.031 1.1E-06 44.3 4.4 65 34-108 53-120 (162)
379 2fa5_A Transcriptional regulat 94.6 0.035 1.2E-06 43.9 4.6 65 34-108 50-117 (162)
380 3hsr_A HTH-type transcriptiona 94.5 0.017 6E-07 44.6 2.6 64 35-108 38-104 (140)
381 2qvo_A Uncharacterized protein 94.5 0.046 1.6E-06 39.2 4.6 51 50-108 30-81 (95)
382 2lkp_A Transcriptional regulat 94.5 0.06 2E-06 40.3 5.4 47 33-90 32-78 (119)
383 3bj6_A Transcriptional regulat 94.5 0.23 7.7E-06 38.6 9.1 64 35-108 42-108 (152)
384 1ylf_A RRF2 family protein; st 94.4 0.024 8.2E-07 44.6 3.2 46 49-103 29-74 (149)
385 3eco_A MEPR; mutlidrug efflux 94.4 0.039 1.3E-06 42.4 4.4 67 34-108 32-101 (139)
386 1z91_A Organic hydroperoxide r 94.4 0.025 8.5E-07 44.0 3.2 66 34-109 41-109 (147)
387 2zig_A TTHA0409, putative modi 94.4 0.032 1.1E-06 49.3 4.3 52 179-234 223-275 (297)
388 2g7u_A Transcriptional regulat 94.4 0.024 8.1E-07 49.0 3.3 59 37-108 18-76 (257)
389 3bro_A Transcriptional regulat 94.3 0.052 1.8E-06 41.7 4.9 65 35-107 36-103 (141)
390 3k69_A Putative transcription 94.2 0.039 1.3E-06 44.0 4.1 47 49-103 27-73 (162)
391 3tgn_A ADC operon repressor AD 94.2 0.044 1.5E-06 42.4 4.4 64 34-108 39-105 (146)
392 2frh_A SARA, staphylococcal ac 94.2 0.036 1.2E-06 42.1 3.8 66 35-108 39-107 (127)
393 2obp_A Putative DNA-binding pr 94.1 0.085 2.9E-06 37.9 5.2 53 49-108 35-88 (96)
394 2pex_A Transcriptional regulat 94.1 0.043 1.5E-06 42.9 4.1 66 34-109 48-116 (153)
395 2bv6_A MGRA, HTH-type transcri 94.1 0.049 1.7E-06 42.0 4.3 65 34-108 38-105 (142)
396 1sfx_A Conserved hypothetical 94.1 0.048 1.6E-06 39.7 4.0 48 34-91 21-68 (109)
397 2fu4_A Ferric uptake regulatio 94.0 0.043 1.5E-06 38.2 3.4 49 34-90 18-71 (83)
398 4aik_A Transcriptional regulat 93.9 0.099 3.4E-06 41.0 5.9 64 36-108 34-100 (151)
399 2ia2_A Putative transcriptiona 93.9 0.025 8.4E-07 49.2 2.5 55 37-104 25-79 (265)
400 3vyw_A MNMC2; tRNA wobble urid 93.9 0.16 5.5E-06 44.7 7.6 119 193-344 96-247 (308)
401 2x4h_A Hypothetical protein SS 93.8 0.069 2.4E-06 41.1 4.7 49 49-108 30-78 (139)
402 2h09_A Transcriptional regulat 93.7 0.079 2.7E-06 41.7 5.0 56 40-108 47-102 (155)
403 2p4w_A Transcriptional regulat 93.6 0.068 2.3E-06 44.3 4.6 66 29-105 11-81 (202)
404 3r0a_A Putative transcriptiona 93.6 0.058 2E-06 40.8 3.8 47 35-90 28-75 (123)
405 3deu_A Transcriptional regulat 93.5 0.064 2.2E-06 42.8 4.1 66 34-108 54-122 (166)
406 1bja_A Transcription regulator 93.5 0.12 4.1E-06 36.9 5.0 60 35-108 18-78 (95)
407 3u1d_A Uncharacterized protein 93.5 0.16 5.5E-06 39.7 6.1 68 34-109 30-107 (151)
408 3nqo_A MARR-family transcripti 93.4 0.089 3E-06 43.0 4.8 70 32-109 40-112 (189)
409 3jw4_A Transcriptional regulat 93.3 0.063 2.1E-06 41.7 3.7 66 35-108 43-111 (148)
410 1q1h_A TFE, transcription fact 93.2 0.089 3.1E-06 38.7 4.2 47 35-90 20-66 (110)
411 4b8x_A SCO5413, possible MARR- 93.0 0.061 2.1E-06 42.0 3.2 53 49-108 50-105 (147)
412 1p6r_A Penicillinase repressor 92.9 0.069 2.4E-06 37.0 3.0 47 35-91 11-61 (82)
413 3hrs_A Metalloregulator SCAR; 92.8 0.097 3.3E-06 43.8 4.3 50 49-108 19-68 (214)
414 1xd7_A YWNA; structural genomi 92.5 0.092 3.2E-06 41.0 3.5 43 52-103 25-67 (145)
415 2fxa_A Protease production reg 92.1 0.1 3.4E-06 43.4 3.5 64 35-108 50-116 (207)
416 2qlz_A Transcription factor PF 92.1 0.041 1.4E-06 46.6 1.2 67 28-105 7-79 (232)
417 3u2r_A Regulatory protein MARR 92.1 0.11 3.6E-06 41.5 3.6 67 34-108 47-116 (168)
418 2lnb_A Z-DNA-binding protein 1 92.0 0.13 4.6E-06 34.7 3.3 55 35-101 21-75 (80)
419 1okr_A MECI, methicillin resis 91.9 0.073 2.5E-06 40.0 2.3 61 36-108 13-80 (123)
420 1sfu_A 34L protein; protein/Z- 91.9 0.37 1.3E-05 32.5 5.4 45 49-101 28-72 (75)
421 2vn2_A DNAD, chromosome replic 91.6 0.25 8.4E-06 37.6 5.0 34 50-90 51-84 (128)
422 4esf_A PADR-like transcription 91.6 0.46 1.6E-05 35.4 6.4 69 29-108 7-86 (117)
423 2fbk_A Transcriptional regulat 91.4 0.078 2.7E-06 42.9 2.0 68 34-108 70-140 (181)
424 4g6q_A Putative uncharacterize 91.3 0.082 2.8E-06 43.0 2.1 65 32-107 22-92 (182)
425 2esh_A Conserved hypothetical 91.1 0.43 1.5E-05 35.6 5.8 67 31-108 11-90 (118)
426 2pn6_A ST1022, 150AA long hypo 91.0 0.19 6.4E-06 39.2 3.9 45 35-89 5-49 (150)
427 2cfx_A HTH-type transcriptiona 90.9 0.21 7.1E-06 38.7 4.0 45 35-89 7-51 (144)
428 2k4b_A Transcriptional regulat 90.7 0.2 7E-06 36.2 3.5 51 34-90 36-86 (99)
429 3l7w_A Putative uncharacterize 90.6 0.26 8.7E-06 36.2 4.0 64 34-108 10-81 (108)
430 2w25_A Probable transcriptiona 90.6 0.23 7.7E-06 38.8 3.9 45 35-89 9-53 (150)
431 2p5v_A Transcriptional regulat 90.3 0.24 8.2E-06 39.3 3.9 45 35-89 12-56 (162)
432 3iht_A S-adenosyl-L-methionine 90.1 0.37 1.2E-05 37.6 4.5 109 182-292 31-149 (174)
433 1ku9_A Hypothetical protein MJ 90.1 0.91 3.1E-05 34.8 7.2 47 49-102 40-87 (152)
434 3tos_A CALS11; methyltransfera 90.0 0.6 2E-05 40.1 6.4 94 193-290 69-217 (257)
435 1jhg_A Trp operon repressor; c 90.0 0.55 1.9E-05 33.9 5.2 41 31-82 43-83 (101)
436 2cyy_A Putative HTH-type trans 89.9 0.25 8.5E-06 38.6 3.7 45 35-89 9-53 (151)
437 2xvc_A ESCRT-III, SSO0910; cel 89.7 0.33 1.1E-05 30.6 3.2 44 36-88 13-56 (59)
438 2dbb_A Putative HTH-type trans 89.7 0.29 1E-05 38.2 3.9 45 35-89 11-55 (151)
439 4fx0_A Probable transcriptiona 89.6 0.34 1.2E-05 37.7 4.2 65 36-108 36-105 (148)
440 2e1c_A Putative HTH-type trans 89.5 0.32 1.1E-05 39.0 4.1 46 34-89 28-73 (171)
441 3ggo_A Prephenate dehydrogenas 89.5 1.8 6.1E-05 38.3 9.4 89 195-288 34-126 (314)
442 2cg4_A Regulatory protein ASNC 89.5 0.26 8.9E-06 38.5 3.5 45 35-89 10-54 (152)
443 3i4p_A Transcriptional regulat 89.5 0.3 1E-05 38.7 3.9 44 35-88 5-48 (162)
444 1uly_A Hypothetical protein PH 89.5 0.33 1.1E-05 39.7 4.2 50 30-90 17-66 (192)
445 1i1g_A Transcriptional regulat 89.4 0.29 1E-05 37.6 3.7 45 35-89 6-50 (141)
446 2d1h_A ST1889, 109AA long hypo 89.4 0.29 9.9E-06 35.4 3.5 35 49-90 35-69 (109)
447 3f8b_A Transcriptional regulat 89.1 1 3.6E-05 33.3 6.5 70 28-108 7-89 (116)
448 1p4x_A Staphylococcal accessor 89.1 0.43 1.5E-05 40.8 4.9 67 34-108 159-228 (250)
449 2ia0_A Putative HTH-type trans 88.9 0.35 1.2E-05 38.7 3.9 46 34-89 18-63 (171)
450 3hhh_A Transcriptional regulat 88.8 0.75 2.6E-05 34.2 5.4 70 28-108 8-88 (116)
451 3cta_A Riboflavin kinase; stru 88.2 0.48 1.6E-05 39.9 4.5 54 49-109 26-79 (230)
452 2v79_A DNA replication protein 88.0 0.64 2.2E-05 35.6 4.6 34 50-90 51-84 (135)
453 3elk_A Putative transcriptiona 87.8 0.39 1.4E-05 35.8 3.3 70 28-108 9-90 (117)
454 1yg2_A Gene activator APHA; vi 87.7 0.65 2.2E-05 37.4 4.8 60 35-105 4-76 (179)
455 1g60_A Adenine-specific methyl 87.2 0.55 1.9E-05 40.3 4.4 51 179-233 200-251 (260)
456 1xma_A Predicted transcription 86.8 0.52 1.8E-05 36.6 3.6 65 33-108 41-118 (145)
457 2dk5_A DNA-directed RNA polyme 86.7 0.46 1.6E-05 33.6 2.9 47 35-89 22-68 (91)
458 1fx7_A Iron-dependent represso 86.6 0.52 1.8E-05 39.7 3.8 47 52-108 26-72 (230)
459 1v4r_A Transcriptional repress 86.1 0.4 1.4E-05 34.6 2.4 34 49-89 33-67 (102)
460 2o03_A Probable zinc uptake re 85.5 0.74 2.5E-05 35.0 3.8 51 31-90 9-64 (131)
461 3k2z_A LEXA repressor; winged 85.1 0.75 2.6E-05 37.6 4.0 34 49-89 23-56 (196)
462 2vxz_A Pyrsv_GP04; viral prote 85.0 0.98 3.4E-05 34.7 4.1 45 36-91 14-58 (165)
463 2fe3_A Peroxide operon regulat 85.0 1 3.6E-05 34.8 4.5 60 32-100 21-86 (145)
464 1cf7_A Protein (transcription 84.9 0.59 2E-05 31.8 2.6 42 49-100 29-71 (76)
465 2ek5_A Predicted transcription 84.7 1.3 4.6E-05 33.5 4.9 43 49-100 26-69 (129)
466 2g9w_A Conserved hypothetical 84.7 0.73 2.5E-05 35.3 3.5 47 34-90 10-61 (138)
467 3tqn_A Transcriptional regulat 84.4 0.92 3.2E-05 33.4 3.8 42 50-100 32-74 (113)
468 1j5y_A Transcriptional regulat 84.4 0.93 3.2E-05 36.8 4.2 59 31-102 19-78 (187)
469 4esb_A Transcriptional regulat 84.4 0.89 3E-05 33.7 3.7 63 35-108 11-84 (115)
470 3mwm_A ZUR, putative metal upt 84.1 1.3 4.3E-05 34.1 4.6 61 32-101 13-79 (139)
471 2qq9_A Diphtheria toxin repres 84.0 1.4 4.7E-05 37.0 5.2 48 51-108 25-72 (226)
472 1hsj_A Fusion protein consisti 83.8 0.87 3E-05 42.8 4.3 64 35-106 406-472 (487)
473 1sd4_A Penicillinase repressor 83.6 0.69 2.3E-05 34.6 2.9 48 34-91 11-62 (126)
474 3b1f_A Putative prephenate deh 83.6 6.2 0.00021 34.0 9.5 88 195-287 7-98 (290)
475 3g7u_A Cytosine-specific methy 83.5 4.6 0.00016 36.6 8.9 96 195-294 3-122 (376)
476 3eyi_A Z-DNA-binding protein 1 83.0 0.86 3E-05 29.9 2.6 47 35-90 12-58 (72)
477 1zkd_A DUF185; NESG, RPR58, st 82.9 2.8 9.4E-05 38.2 7.0 37 191-227 78-121 (387)
478 1pl8_A Human sorbitol dehydrog 82.9 6.5 0.00022 35.1 9.6 93 191-291 169-274 (356)
479 3i71_A Ethanolamine utilizatio 82.7 2.7 9.4E-05 26.4 4.7 43 49-102 17-59 (68)
480 2p8t_A Hypothetical protein PH 82.6 1.6 5.3E-05 35.8 4.7 48 50-108 30-77 (200)
481 3by6_A Predicted transcription 82.4 1.2 4.1E-05 33.5 3.8 42 49-99 33-75 (126)
482 3neu_A LIN1836 protein; struct 82.4 1.6 5.4E-05 32.8 4.5 43 49-100 35-78 (125)
483 4dvj_A Putative zinc-dependent 81.6 3.9 0.00013 36.8 7.6 90 193-290 171-270 (363)
484 2dph_A Formaldehyde dismutase; 81.5 3.9 0.00013 37.3 7.7 103 186-292 179-301 (398)
485 3ri2_A Transcriptional regulat 81.4 4.4 0.00015 30.3 6.6 71 26-108 14-93 (123)
486 2py6_A Methyltransferase FKBM; 80.9 2.5 8.4E-05 38.9 6.1 40 192-231 225-267 (409)
487 2b0l_A GTP-sensing transcripti 80.7 1.2 4.3E-05 32.1 3.2 34 50-90 42-76 (102)
488 2g5c_A Prephenate dehydrogenas 80.6 8.3 0.00028 33.0 9.2 89 195-288 2-94 (281)
489 2pjp_A Selenocysteine-specific 80.6 1.2 4.1E-05 33.3 3.2 42 50-101 20-61 (121)
490 4ham_A LMO2241 protein; struct 80.4 1.5 5.3E-05 33.3 3.8 42 49-99 36-78 (134)
491 2xig_A Ferric uptake regulatio 79.6 2 6.9E-05 33.4 4.3 60 32-100 26-91 (150)
492 2oo3_A Protein involved in cat 79.6 3 0.0001 36.2 5.7 97 194-294 92-202 (283)
493 1pqw_A Polyketide synthase; ro 79.4 4.5 0.00015 32.6 6.7 90 191-292 36-139 (198)
494 1mzb_A Ferric uptake regulatio 79.3 1.7 6E-05 33.1 3.8 61 32-100 17-83 (136)
495 1f8f_A Benzyl alcohol dehydrog 79.3 3.1 0.00011 37.5 6.2 94 191-292 188-291 (371)
496 1g55_A DNA cytosine methyltran 78.0 4.4 0.00015 36.3 6.6 72 194-265 2-82 (343)
497 1e3j_A NADP(H)-dependent ketos 77.9 33 0.0011 30.3 12.5 92 191-291 166-272 (352)
498 3mag_A VP39; methylated adenin 77.5 6.8 0.00023 33.9 7.2 32 193-224 60-95 (307)
499 2p5k_A Arginine repressor; DNA 77.3 3 0.0001 26.7 4.0 35 40-87 12-51 (64)
500 3qv2_A 5-cytosine DNA methyltr 77.2 6.2 0.00021 35.0 7.3 126 193-343 9-158 (327)
No 1
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=100.00 E-value=2e-55 Score=407.20 Aligned_cols=330 Identities=23% Similarity=0.350 Sum_probs=292.4
Q ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+.+++..+++++.||+.+++|++|++|||||.|.+.+ +|.|++|||+++|++ +. .++||||+|++.|++..
T Consensus 5 e~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~--~p~t~~eLA~~~g~~------~~-~l~rlLr~L~~~gll~~ 75 (353)
T 4a6d_A 5 EDQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEAP--GPLDVAAVAAGVRAS------AH-GTELLLDICVSLKLLKV 75 (353)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSS--SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCC--CCCCHHHHHHhhCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 4478889999999999999999999999999998754 699999999999997 88 99999999999999986
Q ss_pred eeeCCCcceecchhch-HhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhC---CChhhhhccCchH
Q 018405 90 SFVDGQRLYSLASVAK-YFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHG---MSIYDYMGVDSRF 165 (356)
Q Consensus 90 ~~~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g---~~~~~~~~~~~~~ 165 (356)
+.+.+++.|++|+.+. ++..++ +.+++.++.+.. +..+..|.+|.+.++++++++...+| .++|+++..+++.
T Consensus 76 ~~~~~~~~y~~t~~s~~~l~~~~--~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~ 152 (353)
T 4a6d_A 76 ETRGGKAFYRNTELSSDYLTTVS--PTSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGE 152 (353)
T ss_dssp EEETTEEEEEECHHHHHHHSTTS--TTCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHH
T ss_pred eccCccceeeCCHHHHHHhhcCC--chHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHH
Confidence 5545557899999998 555555 668888887653 45678999999999999999988887 4678888999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC------CCce
Q 018405 166 NDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY------LGIE 239 (356)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------~~v~ 239 (356)
...|+++|...+....+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++. +||+
T Consensus 153 ~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~ 231 (353)
T 4a6d_A 153 RLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQID 231 (353)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCcee
Confidence 999999999988888889999887 889999999999999999999999999999999999998877542 7899
Q ss_pred EEEccCCC-CCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405 240 HVGGDFFE-SVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP 318 (356)
Q Consensus 240 ~~~~D~~~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (356)
++.+|+++ +.|++|+|++.++||+|+|+++.++|++++++|+|||+++|+|.+.+++...+ .....+++.|+..+
T Consensus 232 ~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~~~- 307 (353)
T 4a6d_A 232 FQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLVQT- 307 (353)
T ss_dssp EEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHHSS-
T ss_pred eecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHHhC-
Confidence 99999998 56667999999999999999999999999999999999999999987654332 34456788888765
Q ss_pred CCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 319 HGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
+|++||.+||.++|++|||+.+++.+..+..++|+++|
T Consensus 308 ~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 308 EGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp SCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 89999999999999999999999999999999999998
No 2
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=100.00 E-value=4e-54 Score=400.19 Aligned_cols=345 Identities=46% Similarity=0.830 Sum_probs=301.9
Q ss_pred chHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCC-CCCCchhHhhhHHHHHHHHhhCC
Q 018405 7 QEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPL-KDNNPEAAAMMLDRVLRLLVSYN 85 (356)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~-~~~~~~~~~~~l~r~L~~l~~~g 85 (356)
..++.+++..+++++.+++.+++|++|++||||+.|.+.| ++|+|++|||+++|+ . +|..+. .++||||+|++.|
T Consensus 14 ~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~g-~~~~t~~eLA~~~g~~~--~~~~~~-~l~rlLr~L~~~g 89 (364)
T 3p9c_A 14 ASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAAG-GKSLTPTEVAAKLPSAA--NPEAPD-MVDRILRLLASYN 89 (364)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHTT-TCCBCHHHHHHTTTCTT--CTTHHH-HHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhcC-CCCCCHHHHHHhcCCCC--Cccchh-hHHHHHHHHHhCC
Confidence 3456789999999999999999999999999999998842 248999999999997 2 233355 8999999999999
Q ss_pred cccceee---CC--CcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhc
Q 018405 86 ALHCSFV---DG--QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMG 160 (356)
Q Consensus 86 ~l~~~~~---~~--~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~ 160 (356)
+++++.. ++ +++|++|+.++.|..++ .+.++++++.+...+.++..|.+|.+++++|.++|+..+|.++|+|+.
T Consensus 90 ~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~ 168 (364)
T 3p9c_A 90 VVTCLVEEGKDGRLSRSYGAAPVCKFLTPNE-DGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHG 168 (364)
T ss_dssp SEEEEEEECSSSCEEEEEEECGGGGGSSCCT-TSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHT
T ss_pred CEEEeccccCCCCcCCEEecCHHHHHHcCCC-CCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHH
Confidence 9996421 11 37899999999887665 356899988776667788899999999999999999999999999999
Q ss_pred cCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceE
Q 018405 161 VDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEH 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 240 (356)
.+++..+.|+..|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.++..+++++
T Consensus 169 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~ 248 (364)
T 3p9c_A 169 TDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTH 248 (364)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEE
T ss_pred hCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEE
Confidence 99999999999999888888888998887677889999999999999999999999999999999999999998899999
Q ss_pred EEccCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCC
Q 018405 241 VGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHG 320 (356)
Q Consensus 241 ~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (356)
+.+|+++++|++|+|++.++||+|+++++.++|++++++|+|||+++|+|.+.++.............+++.|+....++
T Consensus 249 ~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g 328 (364)
T 3p9c_A 249 VGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGG 328 (364)
T ss_dssp EECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred EeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCC
Confidence 99999988777799999999999999999999999999999999999999998765443333334456777777443489
Q ss_pred ccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 321 RERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 321 ~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
+.||.++|.+++++|||+.+++.+..++.++||++|
T Consensus 329 ~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 329 RERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 999999999999999999999999999999999997
No 3
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=100.00 E-value=1.2e-53 Score=397.71 Aligned_cols=344 Identities=49% Similarity=0.876 Sum_probs=301.6
Q ss_pred HHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhC-CCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405 9 EETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKA-GAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL 87 (356)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~-~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l 87 (356)
++.+++..+++++.+++.+++|++|++||||+.|.+. |+++|.|++|||+++|.. +|..+. .++||||+|++.|++
T Consensus 17 ~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~--~~~~~~-~l~rlLr~L~~~gll 93 (368)
T 3reo_A 17 SDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTT--NPEAPV-MLDRVLRLLASYSVV 93 (368)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCC--CTTHHH-HHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcC--CCcchh-hHHHHHHHHHhCCCe
Confidence 5778999999999999999999999999999999884 444689999999999842 344456 899999999999999
Q ss_pred cceee---CC--CcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccC
Q 018405 88 HCSFV---DG--QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVD 162 (356)
Q Consensus 88 ~~~~~---~~--~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~ 162 (356)
+++.. ++ +++|++|+.++.|..++ ++.++++++.+...+.++..|.+|.+++++|.++|+..+|.++|+|+..+
T Consensus 94 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~ 172 (368)
T 3reo_A 94 TYTLRELPSGKVERLYGLAPVCKFLTKNE-DGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTD 172 (368)
T ss_dssp EEEEEECTTSCEEEEEEECTTHHHHSCCT-TSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTC
T ss_pred EEecccCCCCcccceeCcCHHHHHHhCCC-CCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhC
Confidence 96421 11 37899999999877665 35689998877766778889999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEE
Q 018405 163 SRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVG 242 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 242 (356)
++..+.|+++|...+......+++.++++++..+|||||||+|.++..+++++|+++++++|+|.+++.++..++++++.
T Consensus 173 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~ 252 (368)
T 3reo_A 173 HRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLG 252 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEE
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEe
Confidence 99999999999988888888888888667788999999999999999999999999999999999999999889999999
Q ss_pred ccCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405 243 GDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE 322 (356)
Q Consensus 243 ~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (356)
+|+++++|++|+|++.++||+|+++++.++|++++++|+|||+++|+|.+.++.............+++.|+....+++.
T Consensus 253 ~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~ 332 (368)
T 3reo_A 253 GDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKE 332 (368)
T ss_dssp CCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCC
T ss_pred cCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCcc
Confidence 99998877779999999999999999999999999999999999999999876544433334455678777754347899
Q ss_pred CCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 323 RTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 323 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
||.++|.++|++|||+.+++.+..++.++||++|
T Consensus 333 rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 333 RTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp CCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 9999999999999999999999999999999987
No 4
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=100.00 E-value=4.9e-50 Score=371.11 Aligned_cols=325 Identities=22% Similarity=0.305 Sum_probs=285.8
Q ss_pred HHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 9 EETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
...++...+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|++ +. .++||||+|++.|+++
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~g~~------~~-~l~rlLr~l~~~g~l~ 86 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVD----GPRTPAELAAATGTD------AD-ALRRVLRLLAVRDVVR 86 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTT----SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHhCCCEE
Confidence 344788899999999999999999999999999986 599999999999997 88 9999999999999999
Q ss_pred ceeeCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHH
Q 018405 89 CSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDV 168 (356)
Q Consensus 89 ~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 168 (356)
+ ++++|++|+.+..|..++ +.++.+++.+...+.++..|.+|++.+++|+++++..+|.++|+++.++++....
T Consensus 87 ~----~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~ 160 (348)
T 3lst_A 87 E----SDGRFALTDKGAALRSDS--PVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEAL 160 (348)
T ss_dssp E----ETTEEEECTTTGGGSTTS--SSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHH
T ss_pred e----cCCEEecCHHHHHHhcCC--CccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHH
Confidence 3 358999999999887665 5578888877655667789999999999999999999998999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC-----CCCceEEEc
Q 018405 169 FNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS-----YLGIEHVGG 243 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----~~~v~~~~~ 243 (356)
|.+.|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|++.++...+. .++++++.+
T Consensus 161 f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~ 239 (348)
T 3lst_A 161 YYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEG 239 (348)
T ss_dssp HHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEEC
T ss_pred HHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEec
Confidence 999999888877888898887 88899999999999999999999999999999999887773321 157999999
Q ss_pred cCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccC
Q 018405 244 DFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRER 323 (356)
Q Consensus 244 D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (356)
|+++++|..|+|++.+++|||+++++.++|++++++|+|||+++|.|.+.++.... .....+++.++.. .+++.+
T Consensus 240 d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~~-~~~~~~ 314 (348)
T 3lst_A 240 DFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLAA-RTGQER 314 (348)
T ss_dssp CTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHHT-TSCCCC
T ss_pred CCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhhc-CCCcCC
Confidence 99987775599999999999999999999999999999999999999988765322 2234566766665 478899
Q ss_pred CHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 324 TKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 324 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
|.++|.++++++||+++++.+..+..++||++|
T Consensus 315 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 315 TAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp BHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 999999999999999999999778899999985
No 5
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=100.00 E-value=4.2e-50 Score=374.23 Aligned_cols=333 Identities=22% Similarity=0.376 Sum_probs=292.0
Q ss_pred CCccccchHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHH
Q 018405 1 MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRL 80 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~ 80 (356)
|++++.+..+.....++++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|++ +. .++|||++
T Consensus 26 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~----g~~t~~eLA~~~g~~------~~-~l~rlLr~ 94 (369)
T 3gwz_A 26 TPENPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQE----GPRTATALAEATGAH------EQ-TLRRLLRL 94 (369)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTT----SCEEHHHHHHHHTCC------HH-HHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcC----CCCCHHHHHHHHCcC------HH-HHHHHHHH
Confidence 35667777778899999999999999999999999999999986 599999999999997 88 99999999
Q ss_pred HhhCCcccceeeCCCcc-eecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhh
Q 018405 81 LVSYNALHCSFVDGQRL-YSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYM 159 (356)
Q Consensus 81 l~~~g~l~~~~~~~~~~-y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~ 159 (356)
|++.|+++ ++++++ |++|+.++.|..+. +.++.+++.+...+..+..|.+|.+.+++++++|...+|.++|+|+
T Consensus 95 L~~~g~l~---~~~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~ 169 (369)
T 3gwz_A 95 LATVGVFD---DLGHDDLFAQNALSAVLLPDP--ASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLT 169 (369)
T ss_dssp HHHTTSSE---ECSSTTEEECCHHHHTTSCCT--TCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHH
T ss_pred HHhCCCEE---EeCCCceEecCHHHHHHhcCC--chhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHH
Confidence 99999999 444688 99999999886655 4578888877655557789999999999999999999998899999
Q ss_pred ccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC-----
Q 018405 160 GVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS----- 234 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----- 234 (356)
.++++....|+..|..........+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 170 ~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~ 248 (369)
T 3gwz_A 170 HEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGR 248 (369)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHT
T ss_pred HhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhc
Confidence 999999999999999888888888999887 88889999999999999999999999999999999888887764
Q ss_pred --CCCceEEEccCCCCCCC-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh
Q 018405 235 --YLGIEHVGGDFFESVPE-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT 311 (356)
Q Consensus 235 --~~~v~~~~~D~~~~~~~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~ 311 (356)
.++|+++.+|+++++|. .|+|++.+++|+|+++++.++|++++++|+|||+++|+|.+.++.... . ...+++
T Consensus 249 ~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~~~~d~ 323 (369)
T 3gwz_A 249 GLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-TLFVDL 323 (369)
T ss_dssp TCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-HHHHHH
T ss_pred CcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-hhHhhH
Confidence 26899999999987774 499999999999999999999999999999999999999988765321 1 346677
Q ss_pred hhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE-ccCceeEEEEeC
Q 018405 312 ICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY-GACNLYVMEFLK 356 (356)
Q Consensus 312 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~~ 356 (356)
.|+... +++.+|.++|.++++++||+++++.+ ..+..++||++|
T Consensus 324 ~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 324 LLLVLV-GGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHH-SCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHhhc-CCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 776654 88999999999999999999999999 678899999986
No 6
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=100.00 E-value=5.7e-48 Score=357.88 Aligned_cols=337 Identities=25% Similarity=0.445 Sum_probs=288.3
Q ss_pred hHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405 8 EEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL 87 (356)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l 87 (356)
.+..++..++++++.+++.+++|++++++|||+.|.+.+ ||.|++|||+++|++ |..+. .++|||++|++.|++
T Consensus 11 ~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~ela~~~~~~---~~~~~-~l~rlLr~L~~~gll 84 (352)
T 1fp2_A 11 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHG--KPISLSNLVSILQVP---SSKIG-NVRRLMRYLAHNGFF 84 (352)
T ss_dssp THHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHHT--SCEEHHHHHHHHTCC---GGGHH-HHHHHHHHHHHTTSE
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhcC--CCccHHHHHHHhCcC---CCChH-HHHHHHHHHHhCCeE
Confidence 345577889999999999999999999999999998742 489999999999994 33377 999999999999999
Q ss_pred cceeeCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHh-hCCchhHHhhCCChhhhhccCchHH
Q 018405 88 HCSFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQIL-EGGTAFNKAHGMSIYDYMGVDSRFN 166 (356)
Q Consensus 88 ~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~g~~~~~~~~~~~~~~ 166 (356)
+++. ++++.|++|+.+++|..++ +.++++++.+...+.++..|.+|++.++ +|+++|+..+|.++|+++..+++..
T Consensus 85 ~~~~-~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~ 161 (352)
T 1fp2_A 85 EIIT-KEEESYALTVASELLVRGS--DLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYN 161 (352)
T ss_dssp EEEE-SSSEEEEECHHHHTTSTTS--SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHH
T ss_pred EEec-CCCCeEeCCHHHHHHhCCC--CccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHH
Confidence 9531 1358999999999888666 5689998887666667889999999999 8889999889999999999999999
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhc-CCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccC
Q 018405 167 DVFNTGMLGHTCVVMEKVLESYK-GFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDF 245 (356)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~ 245 (356)
..|+..|........+. ++.++ .+++..+|||||||+|.++..+++++|+.+++++|++.+++.+++.++++++.+|+
T Consensus 162 ~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~ 240 (352)
T 1fp2_A 162 TSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDM 240 (352)
T ss_dssp HHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCT
T ss_pred HHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccc
Confidence 99999999887766666 66661 26778999999999999999999999999999999999999998877899999999
Q ss_pred CCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCC---CCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405 246 FESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPD---GGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE 322 (356)
Q Consensus 246 ~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~p---gG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (356)
++++|..|+|++.++||||+++++.++|++++++|+| ||+++|.|...++....+........+++.|+. . +++.
T Consensus 241 ~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~ 318 (352)
T 1fp2_A 241 FTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKE 318 (352)
T ss_dssp TTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCC
T ss_pred cCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCC
Confidence 8877767999999999999998889999999999999 999999999887543221111234456666665 3 5888
Q ss_pred CCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 323 RTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 323 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
+|.++|.++++++||+++++.+..+..++||++|
T Consensus 319 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 319 RNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp EEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 9999999999999999999999888889999986
No 7
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=100.00 E-value=3.8e-48 Score=359.83 Aligned_cols=337 Identities=29% Similarity=0.467 Sum_probs=287.0
Q ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
..++...+++++.+++.+++|++++++|||+.|.+.+ +|.|++|||+++|++ |..+. .++||||+|++.|+|++
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~~--~~~t~~eLA~~~g~~---~~~~~-~l~rlLr~L~~~gll~~ 80 (358)
T 1zg3_A 7 LYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNHG--KPMTLSELASSLKLH---PSKVN-ILHRFLRLLTHNGFFAK 80 (358)
T ss_dssp CTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHHT--SCEEHHHHHHHTTCC---TTTHH-HHHHHHHHHHHTTSEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhcC--CCcCHHHHHHhcCCC---CcchH-HHHHHHHHHhhCCcEEE
Confidence 3466778899999999999999999999999998742 489999999999993 22277 99999999999999995
Q ss_pred eee---C-C---CcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhC--CchhHHhhCCChhhhhc
Q 018405 90 SFV---D-G---QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEG--GTAFNKAHGMSIYDYMG 160 (356)
Q Consensus 90 ~~~---~-~---~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~~g~~~~~~~~ 160 (356)
+.. . + ++.|++|+.+++|..++ +.++++++.+..++.++..|.+|++.++++ .++|+..+|.++|+++.
T Consensus 81 ~~~~~~~~~g~~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~ 158 (358)
T 1zg3_A 81 TIVKGKEGDEEEEIAYSLTPPSKLLISGK--PTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLN 158 (358)
T ss_dssp EEECCSSSSCCCEEEEEECHHHHTTCTTS--TTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHT
T ss_pred ecccccccCCCCCCEEeCCHHHHHHhCCC--CccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHh
Confidence 310 1 1 47999999999888766 568999888776666788999999999998 78898888989999999
Q ss_pred cCchHHH--HHHHHHhhhhHHHHHHHHHHhc-CCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCC
Q 018405 161 VDSRFND--VFNTGMLGHTCVVMEKVLESYK-GFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLG 237 (356)
Q Consensus 161 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 237 (356)
.+++... .|+..|...+.... .+++.++ .+++..+|||||||+|.++..+++++|+++++++|++.+++.+++.++
T Consensus 159 ~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 237 (358)
T 1zg3_A 159 KDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNEN 237 (358)
T ss_dssp SGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSS
T ss_pred cChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCC
Confidence 9999988 99999988776655 7777772 266789999999999999999999999999999999999999887778
Q ss_pred ceEEEccCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCC---CCEEEEEecccCCCCCCchhhhhhhhhhhhhh
Q 018405 238 IEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPD---GGKLLNVNVTIPEVPENSATSREISILDTICL 314 (356)
Q Consensus 238 v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~p---gG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~ 314 (356)
++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+| ||+++|.|...++....+........+++.|+
T Consensus 238 v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~ 317 (358)
T 1zg3_A 238 LNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVML 317 (358)
T ss_dssp EEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHH
T ss_pred cEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHh
Confidence 999999999877767999999999999999899999999999999 99999999988764322111234456677666
Q ss_pred hhcCCCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 315 FQVPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 315 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
... +++.||.++|.++++++||+++++.+..+..++||++|
T Consensus 318 ~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 318 TMF-LGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp HHH-SCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred ccC-CCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 543 78899999999999999999999999878889999986
No 8
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=100.00 E-value=2.8e-48 Score=362.49 Aligned_cols=339 Identities=41% Similarity=0.723 Sum_probs=273.9
Q ss_pred hHHHHHHH--HHHhhhHHHHHHHHHHhcCchhHHHhCC-CCCCCCHHHHHHhCCC---CCCCchhHhhhHHHHHHHHhhC
Q 018405 11 TNNFSYAM--ELAGAIVLPAAMHAVVELDVFEIISKAG-AGAKLSVAEIVAQIPL---KDNNPEAAAMMLDRVLRLLVSY 84 (356)
Q Consensus 11 ~~~~~~~~--~~~~~~~~~~~l~~a~~lglf~~L~~~~-~~~~~t~~ela~~~~~---~~~~~~~~~~~l~r~L~~l~~~ 84 (356)
.++.+.++ +++.+++.+++|++++++|||+.|.+.+ ++++.|++|||+++|+ + |..+. .++||||+|++.
T Consensus 20 ~~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~---~~~~~-~l~rlLr~L~~~ 95 (372)
T 1fp1_D 20 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQH---SDLPN-RLDRMLRLLASY 95 (372)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCC---TTHHH-HHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCC---CcChH-HHHHHHHHHhhC
Confidence 36677788 9999999999999999999999999742 1112999999999999 3 22277 999999999999
Q ss_pred Cccccee---eCC--CcceecchhchHhhhCCCCC-CChHHHHHHhcCcchhhhhhhHHHHHhhC-CchhHHhhCCChhh
Q 018405 85 NALHCSF---VDG--QRLYSLASVAKYFVRNNQNG-ASLRPYMALRLDKVPMDYWFRLKDQILEG-GTAFNKAHGMSIYD 157 (356)
Q Consensus 85 g~l~~~~---~~~--~~~y~~t~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~g~~~~~ 157 (356)
|+|+++. +++ ++.|++|+.+++|..++ + .++++++.+..++.++..|.+|++.++++ +++|+..+|.++|+
T Consensus 96 gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~ 173 (372)
T 1fp1_D 96 SVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE--SRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYE 173 (372)
T ss_dssp TSEEEEEEECTTSCEEEEEEECTTGGGGSTTC--TTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------
T ss_pred CceEecccccCCCCcCCeEecCHHHHHHhCCC--CCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHH
Confidence 9999541 111 36999999999888765 4 57888888766666788999999999998 88898888989999
Q ss_pred hhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCC
Q 018405 158 YMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLG 237 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 237 (356)
++..+++....|+..|..........+++.++.+++..+|||||||+|.++..+++++|+++++++|++.+++.+++.++
T Consensus 174 ~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~ 253 (372)
T 1fp1_D 174 FMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSG 253 (372)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTT
T ss_pred HHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCC
Confidence 99999999999999999888877888888886577889999999999999999999999999999999999999988788
Q ss_pred ceEEEccCCCCCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc
Q 018405 238 IEHVGGDFFESVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV 317 (356)
Q Consensus 238 v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (356)
++++.+|+++++|.+|+|++.++||||+++++.++|++++++|+|||+++|.|...++.............+++.|+..
T Consensus 254 v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~- 332 (372)
T 1fp1_D 254 IEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT- 332 (372)
T ss_dssp EEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH-
T ss_pred CEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhc-
Confidence 9999999998777679999999999999998899999999999999999999998776532221111344566666543
Q ss_pred CCCccCCHHHHHHHHHHcCCcceeEEEccCc-eeEEEEeC
Q 018405 318 PHGRERTKQEYSELAIKAGFKGVNYEYGACN-LYVMEFLK 356 (356)
Q Consensus 318 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 356 (356)
.+++.+|.++|.++++++||+++++.+...+ .++||++|
T Consensus 333 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 333 VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred cCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 3688899999999999999999999985433 69999987
No 9
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=100.00 E-value=7.2e-49 Score=361.19 Aligned_cols=316 Identities=24% Similarity=0.343 Sum_probs=276.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC
Q 018405 15 SYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG 94 (356)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~ 94 (356)
+.+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|++ +. .++|||++|++.|++. +++
T Consensus 7 ~~l~~~~~g~~~~~~l~~a~~lglf~~l~~----g~~t~~elA~~~~~~------~~-~l~rlLr~l~~~gl~~---~~~ 72 (332)
T 3i53_A 7 HIGLRALADLATPMAVRVAATLRVADHIAA----GHRTAAEIASAAGAH------AD-SLDRLLRHLVAVGLFT---RDG 72 (332)
T ss_dssp SSCHHHHTCCHHHHHHHHHHHHTHHHHHHT----TCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEE---ECT
T ss_pred HHHHHHHHhhHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHhCCcEE---ecC
Confidence 457889999999999999999999999986 599999999999997 88 9999999999999999 444
Q ss_pred CcceecchhchHhhhCCCCCCChHHHHHHhcCcchh-hhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHH
Q 018405 95 QRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPM-DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGM 173 (356)
Q Consensus 95 ~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 173 (356)
++.|++|+.++.+..++ +.++.+++.+......+ ..|.+|.+.+++++++|+..+|.++|+++.++++....|...|
T Consensus 73 ~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 150 (332)
T 3i53_A 73 QGVYGLTEFGEQLRDDH--AAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLM 150 (332)
T ss_dssp TSBEEECTTGGGGSTTC--TTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHH
T ss_pred CCeEEcCHhHHHHhcCC--chhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHH
Confidence 68999999999886655 45788888665333344 7899999999999999999999889999999999999999999
Q ss_pred hhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCC
Q 018405 174 LGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFF 246 (356)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~ 246 (356)
........+.+++.++ +++..+|||||||+|.++..+++++|+.+++++|+|.+++.++++ ++|+++.+|++
T Consensus 151 ~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 229 (332)
T 3i53_A 151 SHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFF 229 (332)
T ss_dssp HHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred HHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCC
Confidence 9887777777777776 778899999999999999999999999999999998888877642 68999999999
Q ss_pred CCCCC-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCH
Q 018405 247 ESVPE-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTK 325 (356)
Q Consensus 247 ~~~~~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 325 (356)
+++|. .|+|++.+++|||+++++.++|++++++|+|||+++|.|.+.++. .+ ...+++.|+... +++.+|.
T Consensus 230 ~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~~~-~~~~~t~ 301 (332)
T 3i53_A 230 DPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLTYF-GGKERSL 301 (332)
T ss_dssp SCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHHHH-SCCCCCH
T ss_pred CCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHhhC-CCCCCCH
Confidence 87774 599999999999999999999999999999999999999988764 11 235666666554 7889999
Q ss_pred HHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 326 QEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 326 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
++|.++++++||+++++.+... .++||+++
T Consensus 302 ~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 302 AELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 9999999999999999999888 99999975
No 10
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.5e-47 Score=352.77 Aligned_cols=319 Identities=20% Similarity=0.326 Sum_probs=279.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 12 NNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
.+.+.+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|++ +. .++|||++|++.|++++
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~----~~~t~~ela~~~~~~------~~-~l~r~Lr~L~~~g~l~~-- 73 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIES----GIDSDETLAAAVGSD------AE-RIHRLMRLLVAFEIFQG-- 73 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE--
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHhCCceEe--
Confidence 566889999999999999999999999999976 599999999999997 88 99999999999999994
Q ss_pred eCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHH
Q 018405 92 VDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNT 171 (356)
Q Consensus 92 ~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 171 (356)
.+++.|++|+.++.|. ++ +.++++++.+.....+ ..|.+|.+.+++++++|+..+|.++|+++.++++....|+.
T Consensus 74 -~~~~~y~~t~~s~~l~-~~--~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~ 148 (334)
T 2ip2_A 74 -DTRDGYANTPTSHLLR-DV--EGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLL 148 (334)
T ss_dssp -ETTTEEEECHHHHTTS-SS--TTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHH
T ss_pred -cCCCeEecCHHHHHHh-CC--CccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHH
Confidence 4458999999999777 54 5578888877654444 88999999999999999888898999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEcc
Q 018405 172 GMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGD 244 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D 244 (356)
.| ..+......+++.++ +++ .+|||||||+|..+..+++++|+.+++++|++.+++.+++. ++++++.+|
T Consensus 149 ~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d 225 (334)
T 2ip2_A 149 AM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGD 225 (334)
T ss_dssp HH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESC
T ss_pred HH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCC
Confidence 99 888888888888887 777 99999999999999999999999999999997777666542 589999999
Q ss_pred CCCCCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccC
Q 018405 245 FFESVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRER 323 (356)
Q Consensus 245 ~~~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (356)
+++++|.. |+|++.+++|||+++++.++|++++++|+|||+++|.|...++.... .....+++.|+... +++.+
T Consensus 226 ~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~ 300 (334)
T 2ip2_A 226 MLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFMAC-AGRHR 300 (334)
T ss_dssp TTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHHHH-SCCCC
T ss_pred CCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHhhC-CCcCC
Confidence 99877764 99999999999999999999999999999999999999987654321 23445666666554 68889
Q ss_pred CHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 324 TKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 324 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
|.++|.++++++||+++++.+..++.++|+++|
T Consensus 301 t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 301 TTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred CHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 999999999999999999999888899999986
No 11
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=100.00 E-value=6.5e-45 Score=338.43 Aligned_cols=324 Identities=16% Similarity=0.206 Sum_probs=259.6
Q ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
..++..++++++.+++.+++|++++++|||+.|.+.+ ||.|++|||+++|++ +. .++|||++|++.|++++
T Consensus 12 ~~~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~~--~~~t~~eLA~~~g~~------~~-~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 12 AAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGKR--EGYTLQEISGRTGLT------RY-AAQVLLEASLTIGTILL 82 (363)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCT--TCBCHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhcC--CCCCHHHHHHHhCcC------HH-HHHHHHHHHhhCCCeEe
Confidence 3467888999999999999999999999999998732 599999999999997 88 99999999999999984
Q ss_pred eeeCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhC--CChhhhhccCchHHH
Q 018405 90 SFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHG--MSIYDYMGVDSRFND 167 (356)
Q Consensus 90 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g--~~~~~~~~~~~~~~~ 167 (356)
+ +++|++|+.+.+|..++ ....++.+. .+..+..|.+|++++++|++++...+| .++|+++..+++...
T Consensus 83 ---~-~~~y~~t~~s~~L~~~~----~~~~~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 153 (363)
T 3dp7_A 83 ---E-EDRYVLAKAGWFLLNDK----MARVNMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQ 153 (363)
T ss_dssp ---E-TTEEEECHHHHHHHHCH----HHHHHHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHH
T ss_pred ---c-CCEEecccchHHhhCCC----cccchheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHH
Confidence 3 58999999999888765 222233222 355788999999999999988888888 689999998887665
Q ss_pred ----HHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------C
Q 018405 168 ----VFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------L 236 (356)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~ 236 (356)
.|+..|..... ..++..+. ..+..+|||||||+|.++..+++++|+.+++++|+|.+++.++++ +
T Consensus 154 ~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 229 (363)
T 3dp7_A 154 KSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSE 229 (363)
T ss_dssp HHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGG
T ss_pred HHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCccc
Confidence 35565554332 23444443 356789999999999999999999999999999998888877643 4
Q ss_pred CceEEEccCCCC---CCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCch-hhhhhhhhhh
Q 018405 237 GIEHVGGDFFES---VPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSA-TSREISILDT 311 (356)
Q Consensus 237 ~v~~~~~D~~~~---~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~-~~~~~~~~~~ 311 (356)
+++++.+|++++ .|+. |+|++.++||+|+++++.++|++++++|+|||+++|+|.+.++...... ........++
T Consensus 230 ~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~ 309 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYF 309 (363)
T ss_dssp GEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHH
T ss_pred ceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhH
Confidence 799999999984 5644 9999999999999999999999999999999999999998876432110 0011112233
Q ss_pred hhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEcc-CceeEEEEeC
Q 018405 312 ICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGA-CNLYVMEFLK 356 (356)
Q Consensus 312 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 356 (356)
.++.. .+++.||.++|.++|+++||+++++.+.. .+.++|+++|
T Consensus 310 ~~~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 310 TAMAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHSSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred HhhhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 33332 35778999999999999999999998765 4589999875
No 12
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=100.00 E-value=4.9e-45 Score=341.08 Aligned_cols=324 Identities=22% Similarity=0.352 Sum_probs=274.6
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 11 TNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
......+++++.+++.+++|++++++|||+.|.. ||.|++|||+++|++ +. .++|||++|++.|++++
T Consensus 14 ~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~eLA~~~g~~------~~-~l~r~Lr~L~~~Gll~~- 81 (374)
T 1qzz_A 14 DQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLA----GADTLAGLADRTDTH------PQ-ALSRLVRHLTVVGVLEG- 81 (374)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHT----TCCSHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC-
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHhhCCCEEE-
Confidence 3567789999999999999999999999999965 599999999999997 88 99999999999999994
Q ss_pred eeCCCc--ceecchhchHhhhCCCCCCChHHHHHHhcCcchh-hhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHH
Q 018405 91 FVDGQR--LYSLASVAKYFVRNNQNGASLRPYMALRLDKVPM-DYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFND 167 (356)
Q Consensus 91 ~~~~~~--~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 167 (356)
.+++ .|++|+.+..|..+. +.+++.++.+...+..+ ..|.+|.+.+++++++++..+|.++|+++..+++...
T Consensus 82 --~~~~~~~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~ 157 (374)
T 1qzz_A 82 --GEKQGRPLRPTRLGMLLADGH--PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALAD 157 (374)
T ss_dssp --CCC-CCCCEECTTGGGGSTTC--TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHH
T ss_pred --eCCCCeEEEEChHHHhhcCCC--cccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHH
Confidence 3346 999999998888766 56788888665433455 7889999999999999988899999999998999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceE
Q 018405 168 VFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEH 240 (356)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~ 240 (356)
.|+..|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.++++ +++++
T Consensus 158 ~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 236 (374)
T 1qzz_A 158 SFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTV 236 (374)
T ss_dssp HHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEE
T ss_pred HHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEE
Confidence 9999998777766678888777 778899999999999999999999999999999998888777542 48999
Q ss_pred EEccCCCCCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec--ccCCCCCCchhhhhhhhhhhhhhhhc
Q 018405 241 VGGDFFESVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV--TIPEVPENSATSREISILDTICLFQV 317 (356)
Q Consensus 241 ~~~D~~~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (356)
+.+|++++.|.. |+|++.+++|||+++++.++|++++++|+|||+++|.|. ..++.. .......+++.++...
T Consensus 237 ~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~~~~~ 312 (374)
T 1qzz_A 237 AEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA----DRFFSTLLDLRMLTFM 312 (374)
T ss_dssp EECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHHHH
T ss_pred EeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCC----CcchhhhcchHHHHhC
Confidence 999998877765 999999999999998889999999999999999999998 765432 1223345566665544
Q ss_pred CCCccCCHHHHHHHHHHcCCcceeEEEccCce-----eEEEEeC
Q 018405 318 PHGRERTKQEYSELAIKAGFKGVNYEYGACNL-----YVMEFLK 356 (356)
Q Consensus 318 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~~ 356 (356)
++..++.++|.++++++||+++++.+..... ++|+++|
T Consensus 313 -~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 313 -GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp -SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred -CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 7888999999999999999999999887777 8999875
No 13
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=100.00 E-value=1.4e-44 Score=336.18 Aligned_cols=325 Identities=22% Similarity=0.355 Sum_probs=277.0
Q ss_pred HhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 10 ETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
.....+++++++.+++.+++|.+++++|||+.|.. ||.|++|||+++|++ +. .++|||++|++.|++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~~------~~-~l~r~L~~L~~~g~~~~ 84 (360)
T 1tw3_A 16 QQIDALRTLIRLGSLHTPMVVRTAATLRLVDHILA----GARTVKALAARTDTR------PE-ALLRLIRHLVAIGLLEE 84 (360)
T ss_dssp -CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHT----TCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred cccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhC----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCEEe
Confidence 33557888999999999999999999999999975 599999999999997 88 99999999999999994
Q ss_pred eeeCCCcceecchhchHhhhCCCCCCChHHHHHHhcCcc-hhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHH
Q 018405 90 SFVDGQRLYSLASVAKYFVRNNQNGASLRPYMALRLDKV-PMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDV 168 (356)
Q Consensus 90 ~~~~~~~~y~~t~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 168 (356)
+ ++++|++|+.+.+|..+. +.+++.++.+...+. .+..|.+|.+.+++|+++++..+|.++|+++..+++....
T Consensus 85 ~---~~g~y~~t~~s~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~ 159 (360)
T 1tw3_A 85 D---APGEFVPTEVGELLADDH--PAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRAS 159 (360)
T ss_dssp E---ETTEEEECTTGGGGSTTS--TTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHH
T ss_pred c---CCCeEEeCHHHHHHhcCC--chhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHH
Confidence 2 358999999998888766 568888776653332 5678899999999999998888898999999888999999
Q ss_pred HHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEE
Q 018405 169 FNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHV 241 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~ 241 (356)
|...|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.++++ ++++++
T Consensus 160 f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~ 238 (360)
T 1tw3_A 160 FDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVV 238 (360)
T ss_dssp HHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEE
Confidence 999998777766778888887 788899999999999999999999999999999987777766542 489999
Q ss_pred EccCCCCCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc-cCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405 242 GGDFFESVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT-IPEVPENSATSREISILDTICLFQVPH 319 (356)
Q Consensus 242 ~~D~~~~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (356)
.+|++++.|.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|.. .++.... .....+++.++... +
T Consensus 239 ~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~~-~ 313 (360)
T 1tw3_A 239 EGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLVFL-G 313 (360)
T ss_dssp ECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHHHH-S
T ss_pred eCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhhhc-C
Confidence 99999877765 9999999999999988899999999999999999999988 5543211 22345566665543 6
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEccCc-----eeEEEEeC
Q 018405 320 GRERTKQEYSELAIKAGFKGVNYEYGACN-----LYVMEFLK 356 (356)
Q Consensus 320 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~-----~~vi~~~~ 356 (356)
+..++.++|.++++++||+++++.+..+. .++|+++|
T Consensus 314 ~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 314 GALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp CCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 88899999999999999999999888665 78999875
No 14
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=100.00 E-value=3.2e-43 Score=323.91 Aligned_cols=315 Identities=18% Similarity=0.183 Sum_probs=269.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeC
Q 018405 14 FSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD 93 (356)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~ 93 (356)
.+.+++++.+++.+++|++++++|||+.|.+ ||.|++|||+++|++ +. .++|||++|++.|++++ .
T Consensus 7 ~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~----~~~t~~ela~~~~~~------~~-~l~r~L~~L~~~g~l~~---~ 72 (335)
T 2r3s_A 7 PALFFNTVNAYQRSAAIKAAVELNVFTAISQ----GIESSQSLAQKCQTS------ER-GMRMLCDYLVIIGFMTK---Q 72 (335)
T ss_dssp SHHHHHHHTTHHHHHHHHHHHHTTHHHHHTT----SEECHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHhc----CCCCHHHHHHHhCCC------ch-HHHHHHHHHHhcCCeEe---c
Confidence 3678999999999999999999999999986 599999999999997 88 99999999999999983 3
Q ss_pred CCcceecchhc-hHhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHH
Q 018405 94 GQRLYSLASVA-KYFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTG 172 (356)
Q Consensus 94 ~~~~y~~t~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 172 (356)
++.|++|+.+ .++..++ +.++++++.+...+.....|.+|.+.+++++++++ + |+++..+++....|...
T Consensus 73 -~~~y~~t~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~~~~~~~~ 143 (335)
T 2r3s_A 73 -AEGYRLTSDSAMFLDRQS--KFYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPVWVQFAKA 143 (335)
T ss_dssp -TTEEEECHHHHHHTCTTS--TTCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTHHHHHHHH
T ss_pred -CCEEecCHHHHHHhccCC--cHHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHHHHHHHHH
Confidence 5899999999 5777665 55788888776544678899999999999887653 3 77788888888999999
Q ss_pred HhhhhHHHHHHHHHHhcCC--CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEc
Q 018405 173 MLGHTCVVMEKVLESYKGF--EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGG 243 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~ 243 (356)
|..........+++.++ + .+..+|||||||+|..+..+++.+|+.+++++|++.+++.+++. ++++++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~ 222 (335)
T 2r3s_A 144 MSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAG 222 (335)
T ss_dssp SGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEES
T ss_pred HHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEec
Confidence 98888887888888887 6 78899999999999999999999999999999987777777643 47999999
Q ss_pred cCCC-CCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc
Q 018405 244 DFFE-SVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR 321 (356)
Q Consensus 244 D~~~-~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (356)
|+++ +.++. |+|++.+++|+|+++++.++|++++++|+|||+++++|...++..... .....+++.++...+++.
T Consensus 223 d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 299 (335)
T 2r3s_A 223 SAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLATTPNGD 299 (335)
T ss_dssp CTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHHSSSCC
T ss_pred ccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHeeCCCCC
Confidence 9998 66665 999999999999999999999999999999999999999876543221 234455666665544788
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEccCceeEEEEe
Q 018405 322 ERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFL 355 (356)
Q Consensus 322 ~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 355 (356)
.++.++|.++++++||+.+++.+..++.++|+++
T Consensus 300 ~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 300 AYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred cCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 8999999999999999999999988778877765
No 15
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=100.00 E-value=9.9e-43 Score=323.59 Aligned_cols=312 Identities=20% Similarity=0.308 Sum_probs=261.3
Q ss_pred HHhHHHHHHHHHHh-hhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405 9 EETNNFSYAMELAG-AIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNAL 87 (356)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l 87 (356)
+..++..++++++. +++.+++|++++++|||+.|.+ ||.|++|||+++|++ +. .++|||++|++.|++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~----~~~t~~eLA~~~g~~------~~-~l~rlLr~L~~~gll 94 (359)
T 1x19_A 26 DLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE----GPKDLATLAADTGSV------PP-RLEMLLETLRQMRVI 94 (359)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSE
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC----CCCCHHHHHHHhCcC------hH-HHHHHHHHHHhCCCe
Confidence 44567788889986 8999999999999999999986 599999999999997 88 999999999999999
Q ss_pred cceeeCCCcceecchhch-HhhhCCCCC---CChHHHHHHhcCcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCc
Q 018405 88 HCSFVDGQRLYSLASVAK-YFVRNNQNG---ASLRPYMALRLDKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDS 163 (356)
Q Consensus 88 ~~~~~~~~~~y~~t~~~~-~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~ 163 (356)
++ + ++.|++|+.+. ++..++ + .++++++.+. ...++..|.+|++.++++.+ |+++..++
T Consensus 95 ~~---~-~~~y~~t~~~~~~l~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~~~~p 157 (359)
T 1x19_A 95 NL---E-DGKWSLTEFADYMFSPTP--KEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQVPYP 157 (359)
T ss_dssp EE---E-TTEEEECHHHHHHSSSSC--SBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCSSCSS
T ss_pred Ee---e-CCeEecCHHHHHHhcCCC--CCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------CcccccCc
Confidence 94 3 37999999755 676654 4 5788887665 34577889999999998654 56677788
Q ss_pred h---HHHHHHHHHhhhhH-HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC----
Q 018405 164 R---FNDVFNTGMLGHTC-VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY---- 235 (356)
Q Consensus 164 ~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~---- 235 (356)
+ ....|...|..... .....+++.++ +++..+|||||||+|.++..+++++|+.+++++|++.+++.++++
T Consensus 158 ~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~ 236 (359)
T 1x19_A 158 PVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEK 236 (359)
T ss_dssp CCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhc
Confidence 8 88999999998887 77888898887 888899999999999999999999999999999998887777532
Q ss_pred ---CCceEEEccCCC-CCCCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh
Q 018405 236 ---LGIEHVGGDFFE-SVPEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT 311 (356)
Q Consensus 236 ---~~v~~~~~D~~~-~~~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~ 311 (356)
++++++.+|+++ +.+++|+|++.+++|+|+++++.++|++++++|+|||+++|+|...++... .. ....+
T Consensus 237 ~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~---~~~~~-- 310 (359)
T 1x19_A 237 GVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PN---FDYLS-- 310 (359)
T ss_dssp TCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTS-CC---HHHHH--
T ss_pred CCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCC-ch---HHHHH--
Confidence 469999999998 666669999999999999988999999999999999999999988765421 11 11122
Q ss_pred hhhhhcCCCcc----CCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 312 ICLFQVPHGRE----RTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 312 ~~~~~~~~~~~----~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
.++....+++. ++.++|.++++++||+++++.+.. ..++|+++|
T Consensus 311 ~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 311 HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 23222224666 899999999999999999999887 888999987
No 16
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=100.00 E-value=9.5e-43 Score=322.96 Aligned_cols=313 Identities=17% Similarity=0.264 Sum_probs=256.9
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 11 TNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+....+++++.+++.+++|++++++|||+.|.. |.|++|||+++|++ +. .++||||+|++.|++++
T Consensus 22 l~~p~~l~~~~~~~~~~~~l~~a~~lgif~~l~~-----~~t~~elA~~~~~~------~~-~l~rlLr~L~~~gll~~- 88 (352)
T 3mcz_A 22 LTSVVDLVKLSDQYRQSAILHYAVADKLFDLTQT-----GRTPAEVAASFGMV------EG-KAAILLHALAALGLLTK- 88 (352)
T ss_dssp CCSHHHHHHHHHTHHHHHHHHHHHHTTHHHHTTS-----CBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCChHHHhCC-----CCCHHHHHHHhCcC------hH-HHHHHHHHHHHCCCeEe-
Confidence 3555669999999999999999999999999964 89999999999997 88 99999999999999994
Q ss_pred eeCCCcceecchhch-HhhhCCCCCCChHHHHHHhcCcchhhhhhhHHHHHhhCCch-hHHhhCCChhhhhccCchHHHH
Q 018405 91 FVDGQRLYSLASVAK-YFVRNNQNGASLRPYMALRLDKVPMDYWFRLKDQILEGGTA-FNKAHGMSIYDYMGVDSRFNDV 168 (356)
Q Consensus 91 ~~~~~~~y~~t~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~g~~~~~~~~~~~~~~~~ 168 (356)
.+ +.|++|+.+. ++.++. +.+++.++.+. ...+..|.+|.+.+++|.+. |+.. .++..+++....
T Consensus 89 --~~-~~y~~t~~s~~~l~~~~--~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~ 155 (352)
T 3mcz_A 89 --EG-DAFRNTALTERYLTTTS--ADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDA 155 (352)
T ss_dssp --ET-TEEEECHHHHHHHSTTC--TTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHH
T ss_pred --cC-CeeecCHHHHhhccCCC--hhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHH
Confidence 43 7899999998 555444 66888877654 34677899999999988653 2221 234567888889
Q ss_pred HHHHHhhhhHHHHHHHHHHhcCCCC-CceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceE
Q 018405 169 FNTGMLGHTCVVMEKVLESYKGFEH-VKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEH 240 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~ 240 (356)
|..+|...... +..+++.++ +.+ ..+|||||||+|.++..+++++|+.+++++|++.+++.+++. +++++
T Consensus 156 f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~ 233 (352)
T 3mcz_A 156 FNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEF 233 (352)
T ss_dssp HHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEE
T ss_pred HHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEE
Confidence 99988863332 347778777 666 899999999999999999999999999999998777766542 57999
Q ss_pred EEccCCC-C--CCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh
Q 018405 241 VGGDFFE-S--VPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ 316 (356)
Q Consensus 241 ~~~D~~~-~--~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (356)
+.+|+++ + .+.. |+|++.+++|||+++++.++|++++++|+|||+++|.|.+.++..... .....+++.|+..
T Consensus 234 ~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~ 310 (352)
T 3mcz_A 234 FEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMVN 310 (352)
T ss_dssp EECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHHH
T ss_pred EeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHhh
Confidence 9999998 4 5655 999999999999999999999999999999999999999887653322 2345667777655
Q ss_pred cCCCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 317 VPHGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 317 ~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
..+++.+|.++|.++++++||++++.. .+..++++++|
T Consensus 311 ~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 311 TNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp STTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred CCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 457889999999999999999999843 35688888876
No 17
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*
Probab=99.87 E-value=1.7e-21 Score=172.11 Aligned_cols=171 Identities=18% Similarity=0.203 Sum_probs=126.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC--CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY--PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 250 (356)
..+++.+ .++..+|||||||+|..+..+++.+ |+++++++|. +.+++.|+++ .+|+++++|+.+ +.+
T Consensus 61 ~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~ 138 (261)
T 4gek_A 61 GMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE 138 (261)
T ss_dssp HHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCC
T ss_pred HHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccccc
Confidence 3444444 4678899999999999999999975 6789999996 8888887642 579999999988 666
Q ss_pred CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh-hhhhhhh-hcC----------
Q 018405 251 EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI-LDTICLF-QVP---------- 318 (356)
Q Consensus 251 ~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~---------- 318 (356)
+.|+|++..+||++++++...+|++++++|+|||++++.|.....+.... ...... .++.... ...
T Consensus 139 ~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l 216 (261)
T 4gek_A 139 NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSML 216 (261)
T ss_dssp SEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHH
T ss_pred ccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhh
Confidence 66999999999999988889999999999999999999998776542110 000000 0000000 000
Q ss_pred --CCccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 319 --HGRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 319 --~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
--...|.+++.++|++|||+.++++.-..++..+.++|
T Consensus 217 ~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 217 ENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred cccccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 01235889999999999999998876545566666665
No 18
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=99.84 E-value=7.6e-20 Score=159.05 Aligned_cols=174 Identities=17% Similarity=0.210 Sum_probs=128.7
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC-cE
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA-DT 254 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~-D~ 254 (356)
..+++.+....+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 44555444345678999999999999999999999999999996 8777766543 489999999988 55544 99
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh--------hh----hhhcCCCcc
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT--------IC----LFQVPHGRE 322 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~~~~~ 322 (356)
|++..++||+++++...+|++++++|+|||++++.+...+....... .....+... .. .........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIEN-LNKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHH-HHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhh-HHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 99999999999887788999999999999999999987754311000 000000000 00 000012345
Q ss_pred CCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 323 RTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 323 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
++.++|.++|++|||+.+++.....+++++..+|
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 6899999999999999999988877777766554
No 19
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=99.80 E-value=7.6e-20 Score=157.00 Aligned_cols=169 Identities=15% Similarity=0.185 Sum_probs=121.8
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 250 (356)
....+++.++ .++. +|||||||+|.++..+++. ++.+++++|. +.+++.+++. ++++++.+|+.+ +++
T Consensus 32 ~~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 108 (219)
T 3dlc_A 32 IAENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE 108 (219)
T ss_dssp HHHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred HHHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence 3455666665 4444 9999999999999999998 8889999996 8887777543 479999999988 666
Q ss_pred CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhh-hhhhhhhcCCCccCCHHH
Q 018405 251 EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISIL-DTICLFQVPHGRERTKQE 327 (356)
Q Consensus 251 ~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~e 327 (356)
.. |+|++..++||+++ ...+|++++++|+|||++++.+...+............... .+..... .....++.++
T Consensus 109 ~~~~D~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 185 (219)
T 3dlc_A 109 DNYADLIVSRGSVFFWED--VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVER 185 (219)
T ss_dssp TTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHH
T ss_pred cccccEEEECchHhhccC--HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHH
Confidence 44 99999999999954 78999999999999999999876544310000000000000 0000000 0233457899
Q ss_pred HHHHHHHcCCcceeEEEccCceeEEEE
Q 018405 328 YSELAIKAGFKGVNYEYGACNLYVMEF 354 (356)
Q Consensus 328 ~~~ll~~aGf~~~~~~~~~~~~~vi~~ 354 (356)
|.++|+++||+++++.....+.+++..
T Consensus 186 ~~~~l~~aGf~~v~~~~~~~~~~~~~~ 212 (219)
T 3dlc_A 186 FQNVLDEIGISSYEIILGDEGFWIIIS 212 (219)
T ss_dssp HHHHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred HHHHHHHcCCCeEEEEecCCceEEEEe
Confidence 999999999999999988777766543
No 20
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Probab=99.78 E-value=2e-18 Score=148.42 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=125.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~ 252 (356)
..+++.+. ..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++. ++++++.+|+.+ +.++.
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 45566665 6778899999999999999999987 8889999996 8888777543 479999999988 65554
Q ss_pred --cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405 253 --DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE 330 (356)
Q Consensus 253 --D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 330 (356)
|+|++..++||+++ ...+|++++++|+|||++++.+.......... .....++.++|.+
T Consensus 106 ~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSE--PLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCSS--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcCC--HHHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 99999999999965 68999999999999999999987665431100 0122368999999
Q ss_pred HHHHcCCcceeEEEccCceeEEEEeC
Q 018405 331 LAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 331 ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
+++++||++++..........+.++|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999988877777776654
No 21
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=99.78 E-value=4e-18 Score=146.66 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=119.8
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CCCCC-cEEEe
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SVPEA-DTILM 257 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~-D~i~~ 257 (356)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444444 456789999999999999999986 678999996 8787777654 489999999988 65533 99999
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhh---hhh--hhhhcCCCccCCHHHHHHHH
Q 018405 258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISIL---DTI--CLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~t~~e~~~ll 332 (356)
..++||+++++...+|++++++|+|||++++.++..+.... ........ ... .... .....++.++|.+++
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 188 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDA---YDKTVEAAKQRGFHQLANDL-QTEYYTRIPVMQTIF 188 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHH---HHHHHHHHHHTTCHHHHHHH-HHSCCCBHHHHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHH---HHHHHHHHHhCCCccchhhc-chhhcCCHHHHHHHH
Confidence 99999999877777999999999999999999876543210 00000000 000 0000 012345899999999
Q ss_pred HHcCCcceeEEEccCceeEEEEeC
Q 018405 333 IKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 333 ~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
+++||+++..... ...|++++.|
T Consensus 189 ~~aGf~v~~~~~~-~~~w~~~~~~ 211 (220)
T 3hnr_A 189 ENNGFHVTFTRLN-HFVWVMEATK 211 (220)
T ss_dssp HHTTEEEEEEECS-SSEEEEEEEE
T ss_pred HHCCCEEEEeecc-ceEEEEeehh
Confidence 9999987665444 6777776643
No 22
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=99.76 E-value=7.7e-18 Score=144.46 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=114.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCCCCCC-C-cEEE
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFESVPE-A-DTIL 256 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~~~~~-~-D~i~ 256 (356)
..+++.+..+.+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. ++++++.+|+.+..+. . |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 445555554566789999999999999999998 568999996 8888877653 5799999999885443 3 9999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC-------CccCCHHHHH
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH-------GRERTKQEYS 329 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~t~~e~~ 329 (356)
+.+++||+++++...+|++++++|+|||++++.+...+.......... ........ ..+. ....+.++|.
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 189 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRR-TLQDGRSFRIVKVFRSPAELT 189 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEE-ECTTSCEEEEECCCCCHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceee-ecCCcchhhHhhcCCCHHHHH
Confidence 999999999888899999999999999999999876643210000000 00000000 0011 1235999999
Q ss_pred HHHHHcCCcceeEEEcc
Q 018405 330 ELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 330 ~ll~~aGf~~~~~~~~~ 346 (356)
++++++||++.......
T Consensus 190 ~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 190 ERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHTTEEEEEEEEET
T ss_pred HHHHHCCCEEEeeeccc
Confidence 99999999955544443
No 23
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=99.76 E-value=4e-18 Score=150.79 Aligned_cols=156 Identities=23% Similarity=0.287 Sum_probs=122.2
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA-- 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~-- 252 (356)
...+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|. +.+++.+++. ++++++.+|+.+ +++..
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 455666665 6778899999999999999999987 779999996 7777776554 689999999988 66544
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
|+|++..++||+++++...+|++++++|+|||++++.++..+..... ...+...... . +...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------~~~~~~~~~~-~-~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW------DDEFKEYVKQ-R-KYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGC------CHHHHHHHHH-H-TCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccc------hHHHHHHHhc-C-CCCCCCHHHHHHHH
Confidence 99999999999988889999999999999999999999876541111 0111111111 1 34467999999999
Q ss_pred HHcCCcceeEEEcc
Q 018405 333 IKAGFKGVNYEYGA 346 (356)
Q Consensus 333 ~~aGf~~~~~~~~~ 346 (356)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887653
No 24
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=99.76 E-value=3.1e-18 Score=151.30 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=116.8
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~ 252 (356)
...+++.++ ..+..+|||||||+|.++..+++..+ +++++|. +.+++.+++. ++++++.+|+.+ ++++.
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 455666666 66789999999999999999999875 8999996 8888776542 579999999988 76644
Q ss_pred --cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc-CCCccCCHHHHH
Q 018405 253 --DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV-PHGRERTKQEYS 329 (356)
Q Consensus 253 --D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~e~~ 329 (356)
|+|++..++||+++ ...+|++++++|+|||++++.+...+... . ............. .....++.++|.
T Consensus 103 ~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPN--PASFVSEAYRVLKKGGQLLLVDNSAPEND---A---FDVFYNYVEKERDYSHHRAWKKSDWL 174 (260)
T ss_dssp CEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred CEEEEEEhhhhHhcCC--HHHHHHHHHHHcCCCCEEEEEEcCCCCCH---H---HHHHHHHHHHhcCccccCCCCHHHHH
Confidence 99999999999976 68999999999999999999987765431 1 1111111111111 124557899999
Q ss_pred HHHHHcCCcceeEEEc
Q 018405 330 ELAIKAGFKGVNYEYG 345 (356)
Q Consensus 330 ~ll~~aGf~~~~~~~~ 345 (356)
++|+++||+++.+...
T Consensus 175 ~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 175 KMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHTCEEEEEEEE
T ss_pred HHHHHCCCeEEEEEEe
Confidence 9999999998877654
No 25
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.76 E-value=1.2e-18 Score=150.54 Aligned_cols=161 Identities=16% Similarity=0.164 Sum_probs=114.5
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCC-C-cEEEeccccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPE-A-DTILMKWVLS 262 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~-~-D~i~~~~vlh 262 (356)
.+..+|||||||+|.++..+++..+ +++++|. +.+++.++++ .+++++.+|+.+ +.+. . |+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3578999999999999999999877 8899996 8887776543 679999999988 6554 3 9999999977
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC---chhhhhhhhhhhhhhh---------hc-CC-------Ccc
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN---SATSREISILDTICLF---------QV-PH-------GRE 322 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~-~~-------~~~ 322 (356)
++..++..++|++++++|+|||++++.++..+..... ........+... .+. .. .+ ...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISK-VIPDQEERTVVIEFKSEQDSFRVRFNV 193 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCE-EEEETTTTEEEEEC-----CCEEEEEC
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecc-cccCccccEEEEEeccchhhheeehhh
Confidence 7777788999999999999999999987653211000 000000000000 000 00 00 111
Q ss_pred CCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 323 RTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 323 ~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
++ .+|.++|+++||+.+++.......++|+.+|
T Consensus 194 w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 194 WG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp CC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 22 4899999999999999999876778998875
No 26
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}
Probab=99.75 E-value=2e-17 Score=144.30 Aligned_cols=150 Identities=19% Similarity=0.332 Sum_probs=114.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC---CCCCC--cEE
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE---SVPEA--DTI 255 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~i 255 (356)
..+...++.+++..+|||||||+|.++..+++. +.+++++|. +.+++.++++ ++++.+|+.+ ++++. |+|
T Consensus 30 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i 105 (240)
T 3dli_A 30 ARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGV 105 (240)
T ss_dssp HHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEE
T ss_pred HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEE
Confidence 334444443557789999999999999999987 557899996 8888888754 8999999876 45543 999
Q ss_pred EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405 256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA 335 (356)
Q Consensus 256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 335 (356)
++..++||+++++...+|++++++|+|||++++..+..... ....... .. ......++.++|.++++++
T Consensus 106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~-~~-~~~~~~~~~~~l~~~l~~a 174 (240)
T 3dli_A 106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---------YSLINFY-ID-PTHKKPVHPETLKFILEYL 174 (240)
T ss_dssp EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---------HHHHHHT-TS-TTCCSCCCHHHHHHHHHHH
T ss_pred EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---------HHHHHHh-cC-ccccccCCHHHHHHHHHHC
Confidence 99999999998788999999999999999999977643210 0111111 11 1134567899999999999
Q ss_pred CCcceeEEEcc
Q 018405 336 GFKGVNYEYGA 346 (356)
Q Consensus 336 Gf~~~~~~~~~ 346 (356)
||+++++....
T Consensus 175 Gf~~~~~~~~~ 185 (240)
T 3dli_A 175 GFRDVKIEFFE 185 (240)
T ss_dssp TCEEEEEEEEC
T ss_pred CCeEEEEEEec
Confidence 99999877654
No 27
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=99.75 E-value=1.9e-17 Score=147.16 Aligned_cols=158 Identities=13% Similarity=0.121 Sum_probs=121.1
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 250 (356)
....+++.++ +.+..+|||||||+|.++..+++.+ +.+++++|. +.+++.++++ ++++++.+|+.+ +++
T Consensus 49 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 49 LTDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence 3456777776 7788999999999999999999887 679999996 7777766542 479999999988 666
Q ss_pred CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405 251 EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY 328 (356)
Q Consensus 251 ~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 328 (356)
++ |+|++..++||+++ ...+|++++++|+|||++++.+......... . ........... .+....++.++|
T Consensus 127 ~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-~---~~~~~~~~~~~-~~~~~~~~~~~~ 199 (273)
T 3bus_A 127 DASFDAVWALESLHHMPD--RGRALREMARVLRPGGTVAIADFVLLAPVEG-A---KKEAVDAFRAG-GGVLSLGGIDEY 199 (273)
T ss_dssp TTCEEEEEEESCTTTSSC--HHHHHHHHHTTEEEEEEEEEEEEEESSCCCH-H---HHHHHHHHHHH-HTCCCCCCHHHH
T ss_pred CCCccEEEEechhhhCCC--HHHHHHHHHHHcCCCeEEEEEEeeccCCCCh-h---HHHHHHHHHhh-cCccCCCCHHHH
Confidence 54 99999999999966 5899999999999999999999876532111 0 01111111111 124567899999
Q ss_pred HHHHHHcCCcceeEEEcc
Q 018405 329 SELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 329 ~~ll~~aGf~~~~~~~~~ 346 (356)
.++++++||+++++....
T Consensus 200 ~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 200 ESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHTTCEEEEEEECH
T ss_pred HHHHHHcCCeEEEEEECc
Confidence 999999999999877653
No 28
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=99.74 E-value=7.3e-18 Score=149.17 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=117.1
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC-cEEEecc-cccCCCh
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-DTILMKW-VLSSFDD 266 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~~~-vlh~~~~ 266 (356)
.+..+|||||||+|.++..+++.. .+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++.. ++||+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 356899999999999999999875 47899996 8888877653 689999999988 55444 9999998 9999965
Q ss_pred -HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhh---------h-----------hhhhhhhhhhhcCC------
Q 018405 267 -EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR---------E-----------ISILDTICLFQVPH------ 319 (356)
Q Consensus 267 -~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~------ 319 (356)
++...+|++++++|+|||++++.+...+.......... . ...+.+.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 46789999999999999999997554433211100000 0 00001111100001
Q ss_pred -----CccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 320 -----GRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 320 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
.+.+|.++|.++|+++||+++++........++.++|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2346899999999999999999877766666777664
No 29
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=99.74 E-value=3.1e-17 Score=146.98 Aligned_cols=163 Identities=19% Similarity=0.172 Sum_probs=119.9
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEA 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~ 252 (356)
...+++.++ +.+..+|||||||+|.++..+++.++ .+++++|. +.+++.++++ ++++++.+|+.+.....
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~f 130 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 130 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCe
Confidence 455666665 67788999999999999999997765 49999996 7777766542 47999999987621234
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCC-----CchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPE-----NSATSREISILDTICLFQVPHGRERTKQE 327 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 327 (356)
|+|++..++||+++++...+|++++++|+|||++++.+...+.... ...................+++..++.++
T Consensus 131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 210 (287)
T 1kpg_A 131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 210 (287)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence 9999999999998777899999999999999999999887653210 00000000111111111134677789999
Q ss_pred HHHHHHHcCCcceeEEEc
Q 018405 328 YSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 328 ~~~ll~~aGf~~~~~~~~ 345 (356)
|.++++++||+++++...
T Consensus 211 ~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 211 VQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHhCCcEEEEEEeC
Confidence 999999999999988765
No 30
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=99.74 E-value=1.5e-17 Score=149.88 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=119.6
Q ss_pred HHHHHHHHHh---cCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC
Q 018405 179 VVMEKVLESY---KGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE 247 (356)
Q Consensus 179 ~~~~~~~~~~---~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~ 247 (356)
.....+++.+ ..+.+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.++++ ++++++.+|+.+
T Consensus 65 ~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 143 (297)
T 2o57_A 65 RTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143 (297)
T ss_dssp HHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred HHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence 3445666666 137788999999999999999999986 468999996 7777776542 579999999988
Q ss_pred -CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCC
Q 018405 248 -SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERT 324 (356)
Q Consensus 248 -~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 324 (356)
+++++ |+|++..++||+++ ...+|++++++|+|||++++.++..+...... .....+. .. . .....+
T Consensus 144 ~~~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~---~~-~-~~~~~~ 213 (297)
T 2o57_A 144 IPCEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILD---RI-K-LHDMGS 213 (297)
T ss_dssp CSSCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHH---HH-T-CSSCCC
T ss_pred CCCCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH---HHHHHHH---Hh-c-CCCCCC
Confidence 76654 99999999999976 79999999999999999999998765432111 1111111 11 1 223468
Q ss_pred HHHHHHHHHHcCCcceeEEEc
Q 018405 325 KQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 325 ~~e~~~ll~~aGf~~~~~~~~ 345 (356)
.++|.++++++||+++++...
T Consensus 214 ~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 214 LGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEEEC
Confidence 999999999999999988765
No 31
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*
Probab=99.74 E-value=2.4e-17 Score=143.79 Aligned_cols=155 Identities=18% Similarity=0.270 Sum_probs=117.7
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPE 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~ 251 (356)
....+++.+. ..+..+|||||||+|.++..+++..+ +++++|. +.+++.+++. ++++++.+|+.+ ++++
T Consensus 9 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~ 85 (239)
T 1xxl_A 9 SLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 85 (239)
T ss_dssp HHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred CcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence 3455666666 78889999999999999999998875 7899996 7777776542 579999999987 6654
Q ss_pred C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhh-hhhcCCCccCCHHHH
Q 018405 252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTIC-LFQVPHGRERTKQEY 328 (356)
Q Consensus 252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~e~ 328 (356)
. |+|++..++||+++ ...+|++++++|+|||++++.+...+... . ......... .........++.++|
T Consensus 86 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (239)
T 1xxl_A 86 DSFDIITCRYAAHHFSD--VRKAVREVARVLKQDGRFLLVDHYAPEDP---V---LDEFVNHLNRLRDPSHVRESSLSEW 157 (239)
T ss_dssp TCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECBCSSH---H---HHHHHHHHHHHHCTTCCCCCBHHHH
T ss_pred CcEEEEEECCchhhccC--HHHHHHHHHHHcCCCcEEEEEEcCCCCCh---h---HHHHHHHHHHhccccccCCCCHHHH
Confidence 3 99999999999975 68999999999999999999988765431 1 111111111 110112455789999
Q ss_pred HHHHHHcCCcceeEEEc
Q 018405 329 SELAIKAGFKGVNYEYG 345 (356)
Q Consensus 329 ~~ll~~aGf~~~~~~~~ 345 (356)
.++++++||+++++...
T Consensus 158 ~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 158 QAMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHHTTEEEEEEEEE
T ss_pred HHHHHHCCCcEEEEEee
Confidence 99999999998877654
No 32
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42
Probab=99.73 E-value=8.4e-18 Score=147.81 Aligned_cols=150 Identities=16% Similarity=0.245 Sum_probs=116.7
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA-- 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~-- 252 (356)
...+++.++ ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.++++ ++++++.+|+.+ +++..
T Consensus 82 ~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 82 SRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 345566565 5678899999999999999999876 557999996 7777776543 579999999987 55543
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
|+|++.+++||+++++...+|++++++|+|||++++.+....... ...+. ......++.++|.+++
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---------~~~~~-----~~~~~~~~~~~~~~~l 225 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDR---------FLVDK-----EDSSLTRSDIHYKRLF 225 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CC---------EEEET-----TTTEEEBCHHHHHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccc---------ceecc-----cCCcccCCHHHHHHHH
Confidence 999999999999988899999999999999999999987543321 01110 0123357999999999
Q ss_pred HHcCCcceeEEEcc
Q 018405 333 IKAGFKGVNYEYGA 346 (356)
Q Consensus 333 ~~aGf~~~~~~~~~ 346 (356)
+++||+++++....
T Consensus 226 ~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 226 NESGVRVVKEAFQE 239 (254)
T ss_dssp HHHTCCEEEEEECT
T ss_pred HHCCCEEEEeeecC
Confidence 99999999887653
No 33
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=99.73 E-value=6.1e-17 Score=146.21 Aligned_cols=163 Identities=23% Similarity=0.298 Sum_probs=122.2
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEA 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~ 252 (356)
...+++.+. +.+..+|||||||+|.++..+++.++ .+++++|+ +.+++.++++ ++++++.+|+.+. +..
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 456677666 77888999999999999999999877 78999996 8888777543 3799999998765 433
Q ss_pred -cEEEecccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhh-----hhhhhhhhhhhhhcCC
Q 018405 253 -DTILMKWVLSSFDD-------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATS-----REISILDTICLFQVPH 319 (356)
Q Consensus 253 -D~i~~~~vlh~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 319 (356)
|+|++..++||+++ ++...+|++++++|+|||++++.+...+......... ......++......++
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 217 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence 99999999999944 5678999999999999999999988765421000000 0000011111112356
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEcc
Q 018405 320 GRERTKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 320 ~~~~t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
+..++.+++.++++++||+++++....
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 778899999999999999999887654
No 34
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=99.73 E-value=1.7e-17 Score=146.11 Aligned_cols=153 Identities=13% Similarity=0.064 Sum_probs=116.9
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPE 251 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 251 (356)
...+++.+. ..+..+|||||||+|..+..+++.+ +.+++++|. +.+++.++++ ++++++.+|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 455666666 7788999999999999999999987 678999996 8887777542 479999999988 4433
Q ss_pred C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405 252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE 330 (356)
Q Consensus 252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 330 (356)
. |+|++..++||+++ ..++|++++++|+|||++++.++......... .. .... .. ......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~---~~---~~~~-~~-~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAGG--FAGAEELLAQSLKPGGIMLIGEPYWRQLPATE---EI---AQAC-GV-SSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTSS--SHHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---HH---HHTT-TC-SCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcCC--HHHHHHHHHHHcCCCeEEEEecCcccCCCChH---HH---HHHH-hc-ccccccCCHHHHHH
Confidence 3 99999999999965 78999999999999999999987665432111 00 0000 00 01224578999999
Q ss_pred HHHHcCCcceeEEEc
Q 018405 331 LAIKAGFKGVNYEYG 345 (356)
Q Consensus 331 ll~~aGf~~~~~~~~ 345 (356)
+++++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887653
No 35
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Probab=99.72 E-value=8.6e-17 Score=142.17 Aligned_cols=153 Identities=10% Similarity=0.086 Sum_probs=116.7
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEE
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTI 255 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i 255 (356)
....+++.++ ..+..+|||||||+|.++..+++ ++.+++++|. +.+++.++...+++++.+|+.+ +++.. |+|
T Consensus 22 ~~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v 98 (261)
T 3ege_A 22 IVNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGV 98 (261)
T ss_dssp HHHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEE
T ss_pred HHHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEE
Confidence 3455666665 66789999999999999999998 7889999996 8899999887899999999988 66543 999
Q ss_pred EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405 256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA 335 (356)
Q Consensus 256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 335 (356)
++.+++||+++ ...+|++++++|+ ||++++.+...+..... .....+..... .. ....++.+++. +++++
T Consensus 99 ~~~~~l~~~~~--~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~-~~~~~~~~~~~-~l~~a 168 (261)
T 3ege_A 99 ISILAIHHFSH--LEKSFQEMQRIIR-DGTIVLLTFDIRLAQRI----WLYDYFPFLWE-DA-LRFLPLDEQIN-LLQEN 168 (261)
T ss_dssp EEESCGGGCSS--HHHHHHHHHHHBC-SSCEEEEEECGGGCCCC----GGGGTCHHHHH-HH-HTSCCHHHHHH-HHHHH
T ss_pred EEcchHhhccC--HHHHHHHHHHHhC-CcEEEEEEcCCchhHHH----HHHHHHHHHhh-hh-hhhCCCHHHHH-HHHHc
Confidence 99999999955 7899999999999 99999988754332111 00011110000 01 23345778899 99999
Q ss_pred CCcceeEEEc
Q 018405 336 GFKGVNYEYG 345 (356)
Q Consensus 336 Gf~~~~~~~~ 345 (356)
||+.+++...
T Consensus 169 GF~~v~~~~~ 178 (261)
T 3ege_A 169 TKRRVEAIPF 178 (261)
T ss_dssp HCSEEEEEEC
T ss_pred CCCceeEEEe
Confidence 9999887665
No 36
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=99.72 E-value=3.6e-17 Score=142.33 Aligned_cols=163 Identities=15% Similarity=0.135 Sum_probs=116.4
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC-cEEEe-cccccCCCh
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-DTILM-KWVLSSFDD 266 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~-~~vlh~~~~ 266 (356)
.+..+|||||||+|.++..+++..+ +++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4678999999999999999999876 7899996 8888877654 679999999988 55444 99995 559999854
Q ss_pred -HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhh--------------------hhhhhhhhhhhhcCC------
Q 018405 267 -EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR--------------------EISILDTICLFQVPH------ 319 (356)
Q Consensus 267 -~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~------ 319 (356)
++...+|++++++|+|||++++.+...++......... ......+.++....+
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 57889999999999999999997765543211100000 000000111100001
Q ss_pred -----CccCCHHHHHHHHHHcCCcceeEEEccCceeEEEEeC
Q 018405 320 -----GRERTKQEYSELAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 320 -----~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
.+.+|+++|.++|+++||++..+....+...+++++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 1346999999999999998777665556777888875
No 37
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.72 E-value=1.4e-17 Score=141.44 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=110.9
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ 268 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~ 268 (356)
..+|||||||+|.++..+++. +.+++++|. +.+++.++++ ++++++.+|+.+ +.+.. |+|++.+++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 689999999999999999987 558999996 8888877653 689999999988 65543 9999999999998778
Q ss_pred HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEcc
Q 018405 269 SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 269 ~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
...+|++++++|+|||++++.....+... .+.. . ......++.++|.++++++||+++++....
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----------~~~~---~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 183 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE----------PMYH---P-VATAYRWPLPELAQALETAGFQVTSSHWDP 183 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE----------EECC---S-SSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh----------hhhc---h-hhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence 99999999999999999999876544310 0000 0 012345789999999999999999987764
No 38
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=99.72 E-value=8.1e-17 Score=146.48 Aligned_cols=164 Identities=17% Similarity=0.209 Sum_probs=120.9
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~ 251 (356)
....+++.++ ..+..+|||||||+|.++..+++.+ +.+++++|. +.+++.+++. ++++++.+|+.+....
T Consensus 78 ~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (318)
T 2fk8_A 78 KVDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP 155 (318)
T ss_dssp HHHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred HHHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCC
Confidence 3456666665 6778899999999999999999886 569999996 8877776543 4699999998763223
Q ss_pred CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCc----hhh-hhhhhhhhhhhhhcCCCccCCHH
Q 018405 252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENS----ATS-REISILDTICLFQVPHGRERTKQ 326 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~t~~ 326 (356)
.|+|++..++||+++++...+|++++++|+|||++++.++..+...... +.. ......++......+++..++.+
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 235 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE 235 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence 4999999999999877899999999999999999999988765421000 000 00001111111112456778999
Q ss_pred HHHHHHHHcCCcceeEEEc
Q 018405 327 EYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 327 e~~~ll~~aGf~~~~~~~~ 345 (356)
++.++++++||+++++...
T Consensus 236 ~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 236 MMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHhCCCEEEEEEec
Confidence 9999999999999987664
No 39
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*
Probab=99.72 E-value=7.9e-17 Score=146.19 Aligned_cols=162 Identities=10% Similarity=0.042 Sum_probs=121.6
Q ss_pred HhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEcc
Q 018405 173 MLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGD 244 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D 244 (356)
+..........+++.++.+.+..+|||||||+|.++..+++.+ +.+++++|. +.+++.++++ ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 3344444445666666546678899999999999999999985 578999996 8888777542 479999999
Q ss_pred CCC-CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCc
Q 018405 245 FFE-SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGR 321 (356)
Q Consensus 245 ~~~-~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (356)
+.+ +++.. |+|++..++||++ ...+|++++++|+|||++++.+........... . .......... ..
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~----~~~~~~~~~~--~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-K----WVSQINAHFE--CN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-H----HHHHHHHHHT--CC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-H----HHHHHHhhhc--CC
Confidence 988 66643 9999999999993 799999999999999999999877655321110 1 1111111111 23
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEc
Q 018405 322 ERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 322 ~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
.++.++|.++++++||+++++...
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeC
Confidence 578999999999999999988765
No 40
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=99.72 E-value=3.6e-17 Score=144.02 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=116.5
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPE 251 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~ 251 (356)
...++..+..+.+..+|||||||+|..+..+++..+. +++++|. +.+++.++++ ++++++.+|+.+ +++.
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 112 (257)
T 3f4k_A 34 TRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQN 112 (257)
T ss_dssp HHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCT
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCC
Confidence 3445555544667789999999999999999999986 9999996 7777766542 459999999987 6554
Q ss_pred C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018405 252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS 329 (356)
Q Consensus 252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 329 (356)
. |+|++..++||++ ...+|++++++|+|||++++.++......... .....+... ....++.++|.
T Consensus 113 ~~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~ 180 (257)
T 3f4k_A 113 EELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERPA------EIEDFWMDA---YPEISVIPTCI 180 (257)
T ss_dssp TCEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCCH------HHHHHHHHH---CTTCCBHHHHH
T ss_pred CCEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCChH------HHHHHHHHh---CCCCCCHHHHH
Confidence 3 9999999999983 57899999999999999999987644332111 111111111 12357899999
Q ss_pred HHHHHcCCcceeEEEcc
Q 018405 330 ELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 330 ~ll~~aGf~~~~~~~~~ 346 (356)
++++++||+++.....+
T Consensus 181 ~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 181 DKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHTTEEEEEEEECC
T ss_pred HHHHHCCCeEEEEEECC
Confidence 99999999999887664
No 41
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}
Probab=99.71 E-value=1.8e-17 Score=147.63 Aligned_cols=153 Identities=18% Similarity=0.291 Sum_probs=113.8
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEeccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKWV 260 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~v 260 (356)
+.+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ +++.. |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56789999999999999999999999999999996 8887776543 579999999988 55543 99999999
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh-hhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT-ICLFQVPHGRERTKQEYSELAIKAGFKG 339 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 339 (356)
+||+++ ...+|++++++|+|||++++.+.........+........... .......++..++..+|.++|+++||++
T Consensus 115 l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 192 (276)
T 3mgg_A 115 LEHLQS--PEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192 (276)
T ss_dssp GGGCSC--HHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred hhhcCC--HHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence 999976 5699999999999999999988643221000000011111111 1111112455567889999999999999
Q ss_pred eeEEEc
Q 018405 340 VNYEYG 345 (356)
Q Consensus 340 ~~~~~~ 345 (356)
+++.+.
T Consensus 193 v~~~~~ 198 (276)
T 3mgg_A 193 IRVEPR 198 (276)
T ss_dssp EEEEEE
T ss_pred EEEeeE
Confidence 987754
No 42
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=99.71 E-value=3e-17 Score=145.55 Aligned_cols=152 Identities=16% Similarity=0.060 Sum_probs=116.8
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~ 252 (356)
..++..+..+.+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++ ++++++.+|+.+ +++..
T Consensus 35 ~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (267)
T 3kkz_A 35 LKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNE 113 (267)
T ss_dssp HHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred HHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCC
Confidence 344554444567899999999999999999998 8889999996 8877776543 569999999988 65543
Q ss_pred --cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405 253 --DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE 330 (356)
Q Consensus 253 --D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 330 (356)
|+|++..++||+ + ...+|++++++|+|||++++.+........... ....+.. . ....++.+++.+
T Consensus 114 ~fD~i~~~~~~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~ 181 (267)
T 3kkz_A 114 ELDLIWSEGAIYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAE------INDFWMD-A--YPEIDTIPNQVA 181 (267)
T ss_dssp CEEEEEESSCGGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH------HHHHHHH-H--CTTCEEHHHHHH
T ss_pred CEEEEEEcCCceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH------HHHHHHH-h--CCCCCCHHHHHH
Confidence 999999999999 3 588999999999999999999986543322111 1111111 1 224568999999
Q ss_pred HHHHcCCcceeEEEcc
Q 018405 331 LAIKAGFKGVNYEYGA 346 (356)
Q Consensus 331 ll~~aGf~~~~~~~~~ 346 (356)
+++++||+++++...+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 182 KIHKAGYLPVATFILP 197 (267)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCEEEEEEECC
Confidence 9999999999887765
No 43
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=99.70 E-value=2e-16 Score=137.86 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=109.6
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--cEEEecccccCC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--DTILMKWVLSSF 264 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~ 264 (356)
++..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++.+++||+
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~ 129 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWT 129 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhc
Confidence 46789999999999999999997 568999996 8888777654 689999999988 66544 999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405 265 DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 344 (356)
++ ...+|++++++|+|||++++.+......... . .+...... ......++++++.++++++||++++...
T Consensus 130 ~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---~----~~~~~~~~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 130 EE--PLRALNEIKRVLKSDGYACIAILGPTAKPRE---N----SYPRLYGK-DVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp SC--HHHHHHHHHHHEEEEEEEEEEEECTTCGGGG---G----GGGGGGTC-CCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cC--HHHHHHHHHHHhCCCeEEEEEEcCCcchhhh---h----hhhhhccc-cccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 65 6899999999999999999988654332100 0 11111110 1124457899999999999999998775
Q ss_pred c
Q 018405 345 G 345 (356)
Q Consensus 345 ~ 345 (356)
.
T Consensus 200 ~ 200 (242)
T 3l8d_A 200 V 200 (242)
T ss_dssp E
T ss_pred c
Confidence 4
No 44
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=99.70 E-value=3e-17 Score=135.30 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=115.4
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-CCCceEEEccCCCCCCCC--cEEEecc
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-YLGIEHVGGDFFESVPEA--DTILMKW 259 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~~~~~--D~i~~~~ 259 (356)
+++.++ ..+..+|||||||+|.++..+++... +++++|. +.+++.+++ .+++++..+| .+.+.. |+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 344455 66788999999999999999999874 8999996 777777765 4789999999 444433 9999999
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKG 339 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 339 (356)
++||+++ ...+|++++++|+|||++++.+.......... +....++.++|.++++ ||++
T Consensus 84 ~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMDD--KQHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCSC--HHHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEE
T ss_pred chhcccC--HHHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEE
Confidence 9999965 68999999999999999999987655421110 0122368999999999 9999
Q ss_pred eeEEEccCceeEEEEe
Q 018405 340 VNYEYGACNLYVMEFL 355 (356)
Q Consensus 340 ~~~~~~~~~~~vi~~~ 355 (356)
++..........+.+.
T Consensus 143 ~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEECSSTTEEEEEEE
T ss_pred EEccCCCCceEEEEEe
Confidence 9999887776666654
No 45
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=99.70 E-value=6.3e-17 Score=138.27 Aligned_cols=138 Identities=17% Similarity=0.154 Sum_probs=109.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC-cEEEecccccCCChH
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDDE 267 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~~ 267 (356)
+.+..+|||||||+|.++..+++. +.+++++|. +.+++.++++.++.++.+|+.. +.+.. |+|++..++||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456789999999999999999986 568999996 8888887765578899999887 53333 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC-CcceeEEEc
Q 018405 268 QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG-FKGVNYEYG 345 (356)
Q Consensus 268 ~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~~ 345 (356)
+...+|++++++|+|||++++.......... .... .....++.++|.++++++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGR--------DKLA-------RYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEE--------CTTS-------CEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccc--------cccc-------hhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 8999999999999999999997654332100 0000 0123468999999999999 999987764
No 46
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Probab=99.70 E-value=4.9e-17 Score=147.06 Aligned_cols=165 Identities=17% Similarity=0.185 Sum_probs=118.0
Q ss_pred CCCCceEEEEcCCccHHHHHHH-HhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecc
Q 018405 191 FEHVKKLVDVGGGLGATLNMII-SKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKW 259 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~ 259 (356)
+.+..+|||||||+|..+..++ ...|+.+++++|. +.+++.++++ ++++++.+|+.+ +++.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5678899999999999999986 6789999999996 8887776542 359999999988 65644 9999999
Q ss_pred cccCCChH-HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhh--------hhhhhhhhhhcCC--CccCCHHHH
Q 018405 260 VLSSFDDE-QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREI--------SILDTICLFQVPH--GRERTKQEY 328 (356)
Q Consensus 260 vlh~~~~~-~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~t~~e~ 328 (356)
++||+++. ....+|++++++|+|||++++.+...+....... .+.. ......+...... ...++.+++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS-PWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTC-CCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccc-cceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 99999654 3457999999999999999998876543321110 0000 0000000000001 134799999
Q ss_pred HHHHHHcCCcceeEEEccCc-eeEEEEeC
Q 018405 329 SELAIKAGFKGVNYEYGACN-LYVMEFLK 356 (356)
Q Consensus 329 ~~ll~~aGf~~~~~~~~~~~-~~vi~~~~ 356 (356)
.++++++||+++++...... ...+.++|
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 99999999999998875433 34555554
No 47
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=99.70 E-value=4.7e-17 Score=145.69 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=115.2
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA- 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~- 252 (356)
..+++.+..+.+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.++++ .+++++.+|+.+ +.++.
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 90 (284)
T 3gu3_A 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 90 (284)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCe
Confidence 444555544667899999999999999999999985 89999996 7777766542 379999999998 55554
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc-----CC--CCCCc-hhhhhhhhhhhhhhhh-cCCCccC
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI-----PE--VPENS-ATSREISILDTICLFQ-VPHGRER 323 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~-----~~--~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ 323 (356)
|+|++..++||+++ ...+|++++++|+|||++++.++.. .- +.... .......+..+..... ..+....
T Consensus 91 D~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (284)
T 3gu3_A 91 DIAICHAFLLHMTT--PETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 168 (284)
T ss_dssp EEEEEESCGGGCSS--HHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTT
T ss_pred eEEEECChhhcCCC--HHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhccccc
Confidence 99999999999976 5899999999999999999998761 10 00000 0000111111111000 1133445
Q ss_pred CHHHHHHHHHHcCCcceeEEEc
Q 018405 324 TKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 324 t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
+.+++.+++++|||+.++....
T Consensus 169 ~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 169 IGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp GGGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEEEc
Confidence 6778999999999999876443
No 48
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=99.70 E-value=7.4e-17 Score=141.04 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=106.7
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-C-CceEEEccCCCCCCC-C-cEEEecccccCCCh
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-L-GIEHVGGDFFESVPE-A-DTILMKWVLSSFDD 266 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~-~v~~~~~D~~~~~~~-~-D~i~~~~vlh~~~~ 266 (356)
.+..+|||||||+|.++..+++..+ +++++|. +.+++.+++. . +++++.+|+.+..++ . |+|++.+++||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 4667999999999999999999776 6888896 7777777643 2 899999998874333 3 99999999999976
Q ss_pred HHHHHHHHHHH-HhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh---------hhhhhcCCCccCCHHHHHHHHHHcC
Q 018405 267 EQSLKLLKNCY-KALPDGGKLLNVNVTIPEVPENSATSREISILDT---------ICLFQVPHGRERTKQEYSELAIKAG 336 (356)
Q Consensus 267 ~~~~~~L~~~~-~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~t~~e~~~ll~~aG 336 (356)
...+|++++ ++|+|||++++.++..... .......... .... ......++.++|.++++++|
T Consensus 119 --~~~~l~~~~~~~LkpgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~G 190 (250)
T 2p7i_A 119 --PVALLKRINDDWLAEGGRLFLVCPNANAV-----SRQIAVKMGIISHNSAVTEAEFA-HGHRCTYALDTLERDASRAG 190 (250)
T ss_dssp --HHHHHHHHHHTTEEEEEEEEEEEECTTCH-----HHHHHHHTTSSSSTTCCCHHHHH-TTCCCCCCHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHhcCCCCEEEEEcCChHHH-----HHHHHHHcCccccchhccccccc-ccccccCCHHHHHHHHHHCC
Confidence 589999999 9999999999987643321 0000000000 0001 11345679999999999999
Q ss_pred CcceeEEEc
Q 018405 337 FKGVNYEYG 345 (356)
Q Consensus 337 f~~~~~~~~ 345 (356)
|+++++...
T Consensus 191 f~~~~~~~~ 199 (250)
T 2p7i_A 191 LQVTYRSGI 199 (250)
T ss_dssp CEEEEEEEE
T ss_pred CeEEEEeee
Confidence 999987653
No 49
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}
Probab=99.70 E-value=2.9e-16 Score=139.60 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=112.8
Q ss_pred HHHHHHhcCCCCCceEEEEcCCc---cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCCC-----
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGL---GATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFES----- 248 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~---G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~~----- 248 (356)
..+++.+....+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.++++ ++++++.+|+.++
T Consensus 66 ~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~ 145 (274)
T 2qe6_A 66 VRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILN 145 (274)
T ss_dssp HHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHH
T ss_pred HHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhc
Confidence 34444443123568999999999 998888888899999999997 8888877643 6899999999762
Q ss_pred -------C--CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405 249 -------V--PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH 319 (356)
Q Consensus 249 -------~--~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (356)
+ ...|+|++..+|||+++++...+|++++++|+|||+|++.+...+. ... .......+..... .
T Consensus 146 ~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~~---~~~~~~~~~~~~~-~ 218 (274)
T 2qe6_A 146 HPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LPA---QQKLARITRENLG-E 218 (274)
T ss_dssp SHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CHH---HHHHHHHHHHHHS-C
T ss_pred cchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hHH---HHHHHHHHHhcCC-C
Confidence 2 2349999999999999888999999999999999999999876532 111 1112222221112 3
Q ss_pred CccCCHHHHHHHHHHcCCccee
Q 018405 320 GRERTKQEYSELAIKAGFKGVN 341 (356)
Q Consensus 320 ~~~~t~~e~~~ll~~aGf~~~~ 341 (356)
...++.+++.++| +||++++
T Consensus 219 ~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 219 GWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp CCCBCHHHHHHTT--TTCEECT
T ss_pred CccCCHHHHHHHh--CCCeEcc
Confidence 5568999999999 5998775
No 50
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36
Probab=99.69 E-value=5.5e-17 Score=137.92 Aligned_cols=141 Identities=9% Similarity=0.065 Sum_probs=107.7
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------------------CCceEEEc
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------------------LGIEHVGG 243 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~v~~~~~ 243 (356)
.+++.+. +.+..+|||+|||+|..+..+++. +.+++++|+ +.+++.|+++ .+++++++
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 4445554 567789999999999999999986 568999996 8888777532 47999999
Q ss_pred cCCC-CCC--CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405 244 DFFE-SVP--EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH 319 (356)
Q Consensus 244 D~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (356)
|+.+ +.+ .. |+|++..++|++++++..+++++++++|+|||+++++....+... . . . .
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----------~-~------~-~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----------L-E------G-P 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS----------S-S------S-C
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc----------c-C------C-C
Confidence 9998 544 23 999999999999988888999999999999999555543332110 0 0 0 1
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 320 GRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 320 ~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
....+.+++.+++++ ||+++.+...
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 112578999999998 9998876654
No 51
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42
Probab=99.69 E-value=4.1e-17 Score=142.44 Aligned_cols=138 Identities=18% Similarity=0.233 Sum_probs=110.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC--cEEEeccccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA--DTILMKWVLS 262 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~--D~i~~~~vlh 262 (356)
+..+|||||||+|.++..+++.. ..+++++|. +.+++.++++ .+++++.+|+.+ +.+.. |+|++..++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998876 568999996 8887777543 258899999877 55543 9999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeE
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNY 342 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 342 (356)
|+++++...+|++++++|+|||++++.+...+.. ..++. ......++.++|.++++++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----------~~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG----------VILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS----------EEEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc----------ceecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998878899999999999999999998776531 01110 11233468999999999999999998
Q ss_pred EEcc
Q 018405 343 EYGA 346 (356)
Q Consensus 343 ~~~~ 346 (356)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7653
No 52
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Probab=99.69 E-value=6.2e-17 Score=145.97 Aligned_cols=174 Identities=11% Similarity=0.091 Sum_probs=119.2
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCC
Q 018405 178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFE 247 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~ 247 (356)
......+++.++ . +..+|||||||+|.++..+++. +.+++++|. +.+++.++++ .+++++.+|+.+
T Consensus 69 ~~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~ 144 (299)
T 3g2m_A 69 TSEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSA 144 (299)
T ss_dssp HHHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTB
T ss_pred cHHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhc
Confidence 344556666665 3 3459999999999999999987 568999996 8888877643 579999999998
Q ss_pred -CCCCC-cEEEe-cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCC--chhhhh----hhhh---------
Q 018405 248 -SVPEA-DTILM-KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPEN--SATSRE----ISIL--------- 309 (356)
Q Consensus 248 -~~~~~-D~i~~-~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~--~~~~~~----~~~~--------- 309 (356)
+.++. |+|++ ..++|++++++...+|++++++|+|||+|++.....+..... .....+ ...+
T Consensus 145 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 224 (299)
T 3g2m_A 145 FALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPA 224 (299)
T ss_dssp CCCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEE
T ss_pred CCcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEecc
Confidence 65554 98886 577888887788999999999999999999976544311000 000000 0000
Q ss_pred ----hhhhhh----------hcCCCccCCHHHHHHHHHHcCCcceeEEEccC------ceeEEEEe
Q 018405 310 ----DTICLF----------QVPHGRERTKQEYSELAIKAGFKGVNYEYGAC------NLYVMEFL 355 (356)
Q Consensus 310 ----~~~~~~----------~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~ 355 (356)
.+.+.. .....+.+|.++|.++|+++||+++++.+... ...++|+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 225 EEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred ccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 000000 00011246999999999999999999988752 24566654
No 53
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Probab=99.68 E-value=1.8e-16 Score=147.86 Aligned_cols=144 Identities=22% Similarity=0.278 Sum_probs=112.1
Q ss_pred CCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC--------------CCceEEEccCCC-------C
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY--------------LGIEHVGGDFFE-------S 248 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~-------~ 248 (356)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.++++ ++++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 366899999999999999999987 7889999996 8888777653 589999999987 4
Q ss_pred CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHH
Q 018405 249 VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQ 326 (356)
Q Consensus 249 ~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 326 (356)
+++. |+|++..++|++++ ...+|++++++|+|||++++.+...+..... .. ......... ..+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~----~~--~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTN--KLALFKEIHRVLRDGGELYFSDVYADRRLSE----AA--QQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEESSCCCH----HH--HHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCC--HHHHHHHHHHHcCCCCEEEEEEeccccccCH----hH--hhhHHHhhc-ccccCCCHH
Confidence 4443 99999999999976 6899999999999999999998776542111 00 111111111 134557899
Q ss_pred HHHHHHHHcCCcceeEEE
Q 018405 327 EYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 327 e~~~ll~~aGf~~~~~~~ 344 (356)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887654
No 54
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=99.68 E-value=1.6e-16 Score=138.04 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=107.0
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC-C-cEEEecccccC
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE-A-DTILMKWVLSS 263 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~-~-D~i~~~~vlh~ 263 (356)
..+|||||||+|.++..+++ ++.+++++|. +.+++.++++ .+++++.+|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 36999999999999999876 6778999996 8777776543 3599999999983333 3 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
+++++...+|++++++|+|||++++.+......... ....++.++|.++|+++||+++++.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 998789999999999999999999987654321100 1122689999999999999999887
Q ss_pred Ecc
Q 018405 344 YGA 346 (356)
Q Consensus 344 ~~~ 346 (356)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 764
No 55
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=99.67 E-value=3.4e-16 Score=134.28 Aligned_cols=149 Identities=12% Similarity=0.094 Sum_probs=106.1
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCCC-CCC
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~~ 250 (356)
+++.+. ..+..+|||||||+|.++..+++..|..+++++|. +.+++.++++ ++++++.+|+.. +.+
T Consensus 21 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (217)
T 3jwh_A 21 VVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR 99 (217)
T ss_dssp HHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG
T ss_pred HHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc
Confidence 333343 44678999999999999999999989899999996 8887777543 279999999866 433
Q ss_pred -C-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405 251 -E-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY 328 (356)
Q Consensus 251 -~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 328 (356)
. .|+|++..++||+++++..++|++++++|+|||.+++....... ..+ .......+........++++++
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~l 171 (217)
T 3jwh_A 100 FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-------VKF-ANLPAGKLRHKDHRFEWTRSQF 171 (217)
T ss_dssp GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-------HHT-C-----------CCSCBCHHHH
T ss_pred CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-------hhh-cccccccccccccccccCHHHH
Confidence 2 39999999999999888899999999999999977765432100 000 0000000000112334689998
Q ss_pred H----HHHHHcCCccee
Q 018405 329 S----ELAIKAGFKGVN 341 (356)
Q Consensus 329 ~----~ll~~aGf~~~~ 341 (356)
. ++++++||++..
T Consensus 172 ~~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 172 QNWANKITERFAYNVQF 188 (217)
T ss_dssp HHHHHHHHHHSSEEEEE
T ss_pred HHHHHHHHHHcCceEEE
Confidence 8 899999998754
No 56
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=99.67 E-value=3e-16 Score=134.78 Aligned_cols=151 Identities=16% Similarity=0.134 Sum_probs=107.2
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCCC-CC
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFFE-SV 249 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~ 249 (356)
.+++.+. ..+..+|||||||+|.++..+++..|..+++++|. +.+++.++++ ++++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 3334343 34678999999999999999999999899999996 8888877643 289999999966 43
Q ss_pred CC--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405 250 PE--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQE 327 (356)
Q Consensus 250 ~~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 327 (356)
+. .|+|++..++||+++++..++|++++++|+|||.+++......... +.......+.. ......++.++
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~ 170 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFH-------YGNLFEGNLRH-RDHRFEWTRKE 170 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGC-------CCCT-----GG-GCCTTSBCHHH
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhh-------hcccCcccccc-cCceeeecHHH
Confidence 32 3999999999999988889999999999999996665443211100 00000000000 11233468889
Q ss_pred HH----HHHHHcCCcceeE
Q 018405 328 YS----ELAIKAGFKGVNY 342 (356)
Q Consensus 328 ~~----~ll~~aGf~~~~~ 342 (356)
+. ++++++||++...
T Consensus 171 l~~~~~~l~~~~Gf~v~~~ 189 (219)
T 3jwg_A 171 FQTWAVKVAEKYGYSVRFL 189 (219)
T ss_dssp HHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHHHCCcEEEEE
Confidence 88 8899999976543
No 57
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=99.67 E-value=3.2e-16 Score=136.70 Aligned_cols=159 Identities=18% Similarity=0.119 Sum_probs=109.5
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--cEE
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--DTI 255 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~i 255 (356)
.+...++ ..+..+|||||||+|.++..+++... .+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 3444454 55678999999999999999998732 38999996 7887777654 468999999987 55543 999
Q ss_pred EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC--CCCCCchhh--------hhhhhh-----hhhhhhhcCCC
Q 018405 256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP--EVPENSATS--------REISIL-----DTICLFQVPHG 320 (356)
Q Consensus 256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~--~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~ 320 (356)
++..++||+++ ...+|++++++|+|||++++...... ......... .....+ ....+......
T Consensus 112 ~~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVED--VARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccch--HHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 99999999965 78999999999999999999764211 000000000 000000 00000000122
Q ss_pred ccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 321 RERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 321 ~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
..+|.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3368999999999999999988754
No 58
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=99.67 E-value=5.8e-16 Score=138.15 Aligned_cols=156 Identities=15% Similarity=0.122 Sum_probs=113.0
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC-cEEEec
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA-DTILMK 258 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~-D~i~~~ 258 (356)
.+++.+. ..+..+|||||||+|.++..+++ ++.+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4455555 66778999999999999999998 7889999996 8888877654 689999999988 55544 999999
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhh---hhhhcCCCccCCHHHHHHHHHHc
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTI---CLFQVPHGRERTKQEYSELAIKA 335 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~t~~e~~~ll~~a 335 (356)
.++|++++ ...+|++++++|+|||++++..+..... .............. ..........++.++|.++|+++
T Consensus 125 ~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 200 (279)
T 3ccf_A 125 AMLHWVKE--PEAAIASIHQALKSGGRFVAEFGGKGNI--KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQ 200 (279)
T ss_dssp SCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECTTTT--HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHH
T ss_pred chhhhCcC--HHHHHHHHHHhcCCCcEEEEEecCCcch--HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHc
Confidence 99999975 6899999999999999999976543221 00000000000000 00000012356899999999999
Q ss_pred CCcceeEEEc
Q 018405 336 GFKGVNYEYG 345 (356)
Q Consensus 336 Gf~~~~~~~~ 345 (356)
||+++.+...
T Consensus 201 Gf~~~~~~~~ 210 (279)
T 3ccf_A 201 GFDVTYAALF 210 (279)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 9999876544
No 59
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=99.66 E-value=1.8e-15 Score=140.48 Aligned_cols=214 Identities=11% Similarity=0.008 Sum_probs=137.6
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch-HhhhCCCCCC
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK-YFVRNNQNGA 115 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~-~l~~~~~~~~ 115 (356)
++|..| . +|.|+.|||+.+|++ ++ .+++||+.|++.|+++. .+ + |++|+.+. ++.... ..
T Consensus 47 ~ll~~L-~----~~~t~~eLa~~~g~~------~~-~v~~~L~~l~~~gll~~---~~-~-~~lt~~~~~~l~~~~--~~ 107 (373)
T 2qm3_A 47 NVLSAV-L----ASDDIWRIVDLSEEP------LP-LVVAILESLNELGYVTF---ED-G-VKLTEKGEELVAEYG--IG 107 (373)
T ss_dssp HHHHHH-H----HCSCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEC---SS-S-SEECHHHHHHHHHHT--CC
T ss_pred HHHHHh-c----CCCCHHHHHHHhCCC------hH-HHHHHHHHHhhCCcEEE---CC-C-EEECHHHHHHHHhcC--cc
Confidence 779988 5 489999999999997 78 99999999999999994 32 5 99999877 555432 11
Q ss_pred ChHHHHH-H-hc----CcchhhhhhhHHHHHhhCCchhHHhhCCChhhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhc
Q 018405 116 SLRPYMA-L-RL----DKVPMDYWFRLKDQILEGGTAFNKAHGMSIYDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYK 189 (356)
Q Consensus 116 ~~~~~~~-~-~~----~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (356)
+..+.+. . .. ...+...|..+.+.++....+. ..++.....++ ...... . ... ...
T Consensus 108 ~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~--------l-~~~-~~~ 169 (373)
T 2qm3_A 108 KRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL------HEFDQAYVTPE--TTVARV--------I-LMH-TRG 169 (373)
T ss_dssp CCCC------------CGGGHHHHHHHHHHHTTCCCCC------GGGTCCCBCHH--HHHHHH--------H-HHH-HTT
T ss_pred ccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc------hhcCCeecCHH--HHHHHH--------H-HHh-hcC
Confidence 1111110 0 00 0111223344445544321110 01110000111 110000 0 001 111
Q ss_pred CCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC----C-cEEEe
Q 018405 190 GFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE----A-DTILM 257 (356)
Q Consensus 190 ~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~----~-D~i~~ 257 (356)
..+..+|||+| |+|.++..++...|..+++++|+ +.+++.++++ .+++++.+|+.++.|. . |+|++
T Consensus 170 -~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 170 -DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFIT 247 (373)
T ss_dssp -CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred -CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence 23568999999 99999999999888889999997 8888877653 3799999999884432 3 99999
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
...++.. ....+|++++++|+|||++++++..
T Consensus 248 ~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 248 DPPETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp CCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CCCCchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 8776643 2589999999999999976665543
No 60
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=99.66 E-value=8.5e-16 Score=136.64 Aligned_cols=160 Identities=8% Similarity=0.042 Sum_probs=112.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hH------HHHhCCCC-------CCceEEEcc-C
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PY------VIKNAPSY-------LGIEHVGGD-F 245 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~------~~~~a~~~-------~~v~~~~~D-~ 245 (356)
..+++.++ +.+..+|||||||+|.++..+++.+ |+.+++++|. +. +++.++++ ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 45666666 7788999999999999999999986 7789999997 43 55555432 479999998 4
Q ss_pred CC---CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhh-hhhhhhhhhc--
Q 018405 246 FE---SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREIS-ILDTICLFQV-- 317 (356)
Q Consensus 246 ~~---~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 317 (356)
.. +++.+ |+|++..++||+++. ..+++.++++++|||++++.+...+...... ...... .....+....
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 188 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASA--NALALLFKNMAAVCDHVDVAEWSMQPTALDQ-IGHLQAAMIQGLLYAIAPS 188 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCH--HHHHHHHHHHTTTCSEEEEEEECSSCSSGGG-HHHHHHHHHHHHHHHHSCC
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCH--HHHHHHHHHHhCCCCEEEEEEecCCCCchhh-hhHHHHHHHHHHHhhcccc
Confidence 33 33433 999999999999874 4588888888888999999998775432111 000000 0000000000
Q ss_pred --C-CCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 318 --P-HGRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 318 --~-~~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
. ....++.++|.++++++||++++....
T Consensus 189 ~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 189 DVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred ccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 0 123579999999999999999887655
No 61
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=99.66 E-value=2.6e-16 Score=140.89 Aligned_cols=156 Identities=19% Similarity=0.166 Sum_probs=111.7
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C-CCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S-VPE 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~~~ 251 (356)
..++..++ .++.+|||||||+|.++..+++. +.+++++|. +.+++.+++. ++++++.+|+.+ + ++.
T Consensus 59 ~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG--PQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC--SSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC--CCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 44555554 23679999999999999999987 678999996 8888777643 578999999987 4 343
Q ss_pred C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhh-------hcCCCcc
Q 018405 252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLF-------QVPHGRE 322 (356)
Q Consensus 252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 322 (356)
. |+|++..++||+++ ...+|++++++|+|||++++.++...... ........+...... .......
T Consensus 135 ~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVAD--PRSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccC--HHHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCC
Confidence 3 99999999999976 68999999999999999999876432210 000000000000000 0012345
Q ss_pred CCHHHHHHHHHHcCCcceeEEEcc
Q 018405 323 RTKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 323 ~t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
++.++|.++++++||+++++....
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCHHHHHHHHHHCCCceeeeeeEE
Confidence 689999999999999999887654
No 62
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=99.66 E-value=2.1e-16 Score=139.26 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=111.4
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEE
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTIL 256 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~ 256 (356)
..+++.+. ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+ + +.. |+|+
T Consensus 23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~ 100 (259)
T 2p35_A 23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLY 100 (259)
T ss_dssp HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEE
Confidence 45666665 66778999999999999999999999999999996 8888877653 689999999988 5 443 9999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhh--hhhhh----cCCCccCCHHHHHH
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDT--ICLFQ----VPHGRERTKQEYSE 330 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~t~~e~~~ 330 (356)
+..++||+++ ...+|++++++|+|||++++..+..... ............ +.... ......++.++|.+
T Consensus 101 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (259)
T 2p35_A 101 ANAVFQWVPD--HLAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFN 175 (259)
T ss_dssp EESCGGGSTT--HHHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHH
T ss_pred EeCchhhCCC--HHHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHH
Confidence 9999999965 7899999999999999999987533211 000000000000 00000 00234578999999
Q ss_pred HHHHcCCcce
Q 018405 331 LAIKAGFKGV 340 (356)
Q Consensus 331 ll~~aGf~~~ 340 (356)
+|+++||++.
T Consensus 176 ~l~~aGf~v~ 185 (259)
T 2p35_A 176 ALSPKSSRVD 185 (259)
T ss_dssp HHGGGEEEEE
T ss_pred HHHhcCCceE
Confidence 9999999743
No 63
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=99.65 E-value=2.7e-16 Score=138.15 Aligned_cols=160 Identities=14% Similarity=0.077 Sum_probs=110.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCCC--cE
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPEA--DT 254 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~~--D~ 254 (356)
..+.+.++ ..+..+|||||||+|.++..+++..+. +++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 34444444 446789999999999999999998654 8999996 8787777543 689999999987 66543 99
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC--C---------CCCchhhhhhhhhh-----hhhhhhcC
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE--V---------PENSATSREISILD-----TICLFQVP 318 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~--~---------~~~~~~~~~~~~~~-----~~~~~~~~ 318 (356)
|++..++||+++ ...+|++++++|+|||++++....... . ............+. ..+.....
T Consensus 112 v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (253)
T 3g5l_A 112 VLSSLALHYIAS--FDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDV 189 (253)
T ss_dssp EEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEE
T ss_pred EEEchhhhhhhh--HHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccC
Confidence 999999999955 799999999999999999996432110 0 00000000000000 00000000
Q ss_pred CCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 319 HGRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
....+|.++|.++|+++||+++++...
T Consensus 190 ~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 190 QKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred ccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 112349999999999999999988754
No 64
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=99.65 E-value=1.2e-15 Score=132.24 Aligned_cols=149 Identities=18% Similarity=0.133 Sum_probs=108.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCCC-CCCCC--cEEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFFE-SVPEA--DTIL 256 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~~~~--D~i~ 256 (356)
++..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.. +++.. |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 46789999999999999999997 668999996 7777766542 257899999988 65543 9999
Q ss_pred ecccccCCChH-HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc--------------CCCc
Q 018405 257 MKWVLSSFDDE-QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV--------------PHGR 321 (356)
Q Consensus 257 ~~~vlh~~~~~-~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 321 (356)
+..++||+++. ....+|++++++|+|||++++.+....... . .........+...... ....
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL--K-LYRKRYLHDFPITKEEGSFLARDPETGETEFIAH 183 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS--H-HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH--H-HHHHHhhhhccchhhhcceEecccccCCcceeeE
Confidence 99999999753 456999999999999999999987654321 0 0000000011000000 0013
Q ss_pred cCCHHHHHHHHHHcCCcceeEEEc
Q 018405 322 ERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 322 ~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
.++.++|.++++++||+++++...
T Consensus 184 ~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 184 HFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp CBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eCCHHHHHHHHHHcCCEEEEEEec
Confidence 579999999999999999987643
No 65
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.65 E-value=2.6e-15 Score=129.01 Aligned_cols=138 Identities=22% Similarity=0.203 Sum_probs=103.1
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ 268 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~ 268 (356)
+..+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +.+.. |+|++.+++||+++
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~-- 117 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDD-- 117 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSC--
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccC--
Confidence 3789999999999999988764 88886 8888877765 79999999887 65543 99999999999965
Q ss_pred HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 269 SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 269 ~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
...+|++++++|+|||++++.++.... ............ .........++.++|.++++++||+++++...
T Consensus 118 ~~~~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 118 PERALKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNKEK-SVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTTTC--CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHhcC-cchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 689999999999999999998764322 111100000000 00011244579999999999999999987664
No 66
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=99.65 E-value=1.5e-15 Score=127.57 Aligned_cols=132 Identities=21% Similarity=0.238 Sum_probs=107.8
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEEe
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTILM 257 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~ 257 (356)
.++..+ +++..+|||||||+|.++..+++. +.+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 455555 357789999999999999999986 568999996 7777777654 679999999988 55543 99999
Q ss_pred c-ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405 258 K-WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG 336 (356)
Q Consensus 258 ~-~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 336 (356)
. .++|++++++...+|+++++.|+|||++++.... ...++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~---------------------------~~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA---------------------------GRGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET---------------------------TSSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC---------------------------CCCcCHHHHHHHHHHcC
Confidence 8 8999998888899999999999999999985421 11257899999999999
Q ss_pred CcceeEEEc
Q 018405 337 FKGVNYEYG 345 (356)
Q Consensus 337 f~~~~~~~~ 345 (356)
|++++....
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999887554
No 67
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=99.64 E-value=9e-16 Score=135.41 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=103.8
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--cEEEecccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA--DTILMKWVL 261 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D~i~~~~vl 261 (356)
+.+..+|||||||+|.++..+++. +.+++++|. +.+++.++++ ++++++.+|+.+ +++++ |+|++..++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 567789999999999999999986 568999996 7777766432 689999999987 65543 999999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC---CCccCCHHHHHHHHHHcCCc
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP---HGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~t~~e~~~ll~~aGf~ 338 (356)
|++++ ...+|++++++|+|||++++. ...++ ....................+ ....++.+++.++++++||+
T Consensus 115 ~~~~~--~~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPD--WPKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTT--HHHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCC--HHHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 99975 789999999999999999987 21111 011000000111111100000 11245789999999999999
Q ss_pred ceeEE
Q 018405 339 GVNYE 343 (356)
Q Consensus 339 ~~~~~ 343 (356)
++.+.
T Consensus 190 ~~~~~ 194 (263)
T 2yqz_A 190 PRTRE 194 (263)
T ss_dssp CEEEE
T ss_pred cceEE
Confidence 87653
No 68
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=99.64 E-value=9.7e-16 Score=133.69 Aligned_cols=162 Identities=11% Similarity=0.046 Sum_probs=110.9
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecc-cccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKW-VLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~-vlh~ 263 (356)
+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 6689999999999999999987 468999996 8888777643 279999999987 55544 9999998 9999
Q ss_pred CC-hHHHHHHHHHHHHhCCCCCEEEEEecccCCC----CCCchh---hhhh-----------hhhhhhhhhhc-------
Q 018405 264 FD-DEQSLKLLKNCYKALPDGGKLLNVNVTIPEV----PENSAT---SREI-----------SILDTICLFQV------- 317 (356)
Q Consensus 264 ~~-~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~----~~~~~~---~~~~-----------~~~~~~~~~~~------- 317 (356)
++ .++..++|++++++|+|||++++........ ...... .... ....+.++...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 94 3678999999999999999999843211000 000000 0000 00000000000
Q ss_pred ---CCCccCCHHHHHHHHHHcCCcceeEEEc--------cCceeEEEEeC
Q 018405 318 ---PHGRERTKQEYSELAIKAGFKGVNYEYG--------ACNLYVMEFLK 356 (356)
Q Consensus 318 ---~~~~~~t~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~~ 356 (356)
.....++.++|.++|+++||+++++... .....++.++|
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 0123469999999999999999998754 13445666664
No 69
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=99.64 E-value=1.6e-15 Score=132.12 Aligned_cols=95 Identities=24% Similarity=0.343 Sum_probs=80.1
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecc-ccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKW-VLS 262 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~-vlh 262 (356)
.+..+|||||||+|.++..+++. .+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 35689999999999999999886 68999996 8888777543 579999999987 55544 9999986 999
Q ss_pred CC-ChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 263 SF-DDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 263 ~~-~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
|+ +.++...+|++++++|+|||++++.
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 98 5567889999999999999999873
No 70
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=99.64 E-value=1.8e-15 Score=127.61 Aligned_cols=142 Identities=20% Similarity=0.140 Sum_probs=109.8
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCC-c
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEA-D 253 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~-D 253 (356)
.+++.++ ..+..+|||||||+|..+..+++. +.+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444454 456789999999999999999986 568999996 8777776542 479999999987 55444 9
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAI 333 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 333 (356)
+|++..++||+++++...+|++++++|+|||++++++......... . ......++.+++.++++
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~----------~------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC----------T------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC----------C------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC----------C------CCCCCccCHHHHHHHhc
Confidence 9999999999987789999999999999999999988766443110 0 01223468899999998
Q ss_pred HcCCcceeEEEc
Q 018405 334 KAGFKGVNYEYG 345 (356)
Q Consensus 334 ~aGf~~~~~~~~ 345 (356)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 6 988876543
No 71
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=99.64 E-value=6.7e-16 Score=132.99 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=110.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCC-----CCC--Cc
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFES-----VPE--AD 253 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~-----~~~--~D 253 (356)
..+++.+. ..++.+|||||||+|.++..+++. +.+++++|. +.+++.+++..++.+..+|+.+. .+. .|
T Consensus 42 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 42 QAILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence 34555555 445699999999999999999987 668999996 88888888778888998887541 222 29
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc-----CCCccCCHHHH
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV-----PHGRERTKQEY 328 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~t~~e~ 328 (356)
+|++.+++| ++ +...+|++++++|+|||++++.++........... ..+......... .....++.++|
T Consensus 119 ~v~~~~~l~-~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 3e8s_A 119 LICANFALL-HQ--DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASW 192 (227)
T ss_dssp EEEEESCCC-SS--CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHH
T ss_pred EEEECchhh-hh--hHHHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHH
Confidence 999999999 54 46899999999999999999988755432211000 000000000000 01234699999
Q ss_pred HHHHHHcCCcceeEEE
Q 018405 329 SELAIKAGFKGVNYEY 344 (356)
Q Consensus 329 ~~ll~~aGf~~~~~~~ 344 (356)
.++|+++||+++++..
T Consensus 193 ~~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 193 LNALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHHTTEEEEEEEC
T ss_pred HHHHHHcCCeEEEEec
Confidence 9999999999998765
No 72
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Probab=99.62 E-value=3e-15 Score=128.17 Aligned_cols=131 Identities=17% Similarity=0.206 Sum_probs=102.4
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecc
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKW 259 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~ 259 (356)
.+++.+....+..+|||||||+|.++..+. .+++++|.... +++++.+|+.+ +.+.. |+|++..
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~ 123 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCL 123 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEES
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEeh
Confidence 455555434567899999999999988773 57888986322 68899999988 66543 9999999
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKG 339 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 339 (356)
++|+ ++...+|++++++|+|||++++.+.... ..+.++|.++++++||++
T Consensus 124 ~l~~---~~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~~ 173 (215)
T 2zfu_A 124 SLMG---TNIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFKI 173 (215)
T ss_dssp CCCS---SCHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEEE
T ss_pred hccc---cCHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCEE
Confidence 9984 3478999999999999999999874320 127899999999999999
Q ss_pred eeEEEccCceeEEEEeC
Q 018405 340 VNYEYGACNLYVMEFLK 356 (356)
Q Consensus 340 ~~~~~~~~~~~vi~~~~ 356 (356)
+........+.+++++|
T Consensus 174 ~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 174 VSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEECCSTTCEEEEEEE
T ss_pred EEEecCCCeEEEEEEEe
Confidence 88766666667777654
No 73
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Probab=99.62 E-value=3.3e-16 Score=140.69 Aligned_cols=145 Identities=17% Similarity=0.241 Sum_probs=104.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------------------------------------
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------------------------------------ 235 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------------------------ 235 (356)
+..+|||||||+|.++..+++.++..+++++|+ +.+++.|+++
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 568999999999999999999999999999997 7777766542
Q ss_pred ----------------------------CCceEEEccCCCCC------CC-C-cEEEecccccCC----ChHHHHHHHHH
Q 018405 236 ----------------------------LGIEHVGGDFFESV------PE-A-DTILMKWVLSSF----DDEQSLKLLKN 275 (356)
Q Consensus 236 ----------------------------~~v~~~~~D~~~~~------~~-~-D~i~~~~vlh~~----~~~~~~~~L~~ 275 (356)
.+|+++.+|+.... +. . |+|++..+++++ ++++..++|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998632 33 3 999999999765 66788999999
Q ss_pred HHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHH--cCCcceeEEEc
Q 018405 276 CYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIK--AGFKGVNYEYG 345 (356)
Q Consensus 276 ~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~~~~~~~ 345 (356)
++++|+|||+|++......... ..........- .. ......++++.++|.+ +||+.++++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~------~~~~~~~~~~~-~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYG------KRKTLTETIYK-NY-YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHH------TTTTSCHHHHH-HH-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhh------hhhcccHHHHh-hh-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 9999999999998533221100 00000000000 00 1122357899999999 99988887654
No 74
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}
Probab=99.62 E-value=1.6e-15 Score=133.24 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=85.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ 268 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~ 268 (356)
...+|||||||+|.++..|++.+ .+++++|. +.+++.+++.++++++.+|+.+ +++++ |+|++..++|+++
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~--- 113 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFD--- 113 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCC---
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhh---
Confidence 45799999999999999999875 47899996 8999999988999999999988 77765 9999999998875
Q ss_pred HHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 269 SLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 269 ~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
..+++++++++|||||+|+++....+
T Consensus 114 ~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 114 LDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 36799999999999999999876443
No 75
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=99.61 E-value=1e-15 Score=133.73 Aligned_cols=147 Identities=13% Similarity=0.068 Sum_probs=107.0
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCC-------CcEEEec
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPE-------ADTILMK 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~-------~D~i~~~ 258 (356)
+.+..+|||||||+|.++..+++..+ +++++|. +.+++.++++ .+++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45778999999999999999999888 7888896 7777776543 479999999988 3221 4999999
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh-----hhhh-hhhhcCCCccCCHHHHHHHH
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI-----LDTI-CLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~t~~e~~~ll 332 (356)
.++|++++++..++|++++++|+|||++++.+...+... ........ ..+. .+........++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence 999999987899999999999999999999998654310 00000000 0000 00000011236899999999
Q ss_pred HHcCCcceeEEE
Q 018405 333 IKAGFKGVNYEY 344 (356)
Q Consensus 333 ~~aGf~~~~~~~ 344 (356)
+||+++....
T Consensus 209 --aGf~~~~~~~ 218 (245)
T 3ggd_A 209 --PDFEILSQGE 218 (245)
T ss_dssp --TTEEEEEEEC
T ss_pred --CCCEEEeccc
Confidence 9999987544
No 76
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=99.59 E-value=8.9e-16 Score=130.72 Aligned_cols=151 Identities=11% Similarity=0.018 Sum_probs=106.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--cEEEecccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA--DTILMKWVL 261 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D~i~~~~vl 261 (356)
..+..+|||||||+|..+..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 446789999999999985544443 5679999996 8887776543 579999999988 66543 999999999
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN 341 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 341 (356)
||++.++..++|++++++|+|||++++.+...++.............+.............++.+++.++++++||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99987889999999999999999999988765442110000000000000000000012456899999999999997665
Q ss_pred E
Q 018405 342 Y 342 (356)
Q Consensus 342 ~ 342 (356)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 4
No 77
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Probab=99.59 E-value=3.4e-15 Score=134.10 Aligned_cols=142 Identities=18% Similarity=0.102 Sum_probs=95.3
Q ss_pred CCCceEEEEcCCccHHHH----HHHHhCCCCeE--EEccc-hHHHHhCCCC-------CCceEE--EccCCC-C------
Q 018405 192 EHVKKLVDVGGGLGATLN----MIISKYPRIKG--INYDL-PYVIKNAPSY-------LGIEHV--GGDFFE-S------ 248 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~----~l~~~~p~~~~--~~~D~-~~~~~~a~~~-------~~v~~~--~~D~~~-~------ 248 (356)
.+..+|||||||+|.++. .++.++|+.++ +++|. +.+++.++++ +++.+. .++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 356799999999997654 44556688854 99996 8887766432 344443 444432 2
Q ss_pred CCC-C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhc-CCCccCCH
Q 018405 249 VPE-A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQV-PHGRERTK 325 (356)
Q Consensus 249 ~~~-~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~ 325 (356)
+++ . |+|++.+++||++| ..++|++++++|||||++++.+...+. . .... .......... .....++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~----~-~~~~--~~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKD--IPATLKFFHSLLGTNAKMLIIVVSGSS----G-WDKL--WKKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSC--HHHHHHHHHHTEEEEEEEEEEEECTTS----H-HHHH--HHHHGGGSCCCTTCCCCCH
T ss_pred cCCCceeEEEEeeeeeecCC--HHHHHHHHHHHcCCCcEEEEEEecCCc----c-HHHH--HHHHHHhccCCCcccCCCH
Confidence 233 3 99999999999976 789999999999999999998653211 1 1110 1010000000 01245689
Q ss_pred HHHHHHHHHcCCcceeE
Q 018405 326 QEYSELAIKAGFKGVNY 342 (356)
Q Consensus 326 ~e~~~ll~~aGf~~~~~ 342 (356)
++|.++|+++||+++..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999998763
No 78
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}
Probab=99.58 E-value=1.8e-15 Score=130.46 Aligned_cols=151 Identities=19% Similarity=0.185 Sum_probs=108.2
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC---CCCCC--cEEE
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE---SVPEA--DTIL 256 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~---~~~~~--D~i~ 256 (356)
.+++.++ .+..+|||||||+|..+..+++. + .+++++|. +.+++.++.. ..+++.+|+.+ +.++. |+|+
T Consensus 24 ~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~v~ 98 (230)
T 3cc8_A 24 NLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-LDHVVLGDIETMDMPYEEEQFDCVI 98 (230)
T ss_dssp HHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-SSEEEESCTTTCCCCSCTTCEEEEE
T ss_pred HHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-CCcEEEcchhhcCCCCCCCccCEEE
Confidence 4444443 46789999999999999999987 4 89999996 7888777654 24788899875 33333 9999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhh-hhhhh-----hhcCCCccCCHHHHHH
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISIL-DTICL-----FQVPHGRERTKQEYSE 330 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~t~~e~~~ 330 (356)
+..++||+++ ...+|+++++.|+|||++++..+..... ....... ..+.. ........++.++|.+
T Consensus 99 ~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (230)
T 3cc8_A 99 FGDVLEHLFD--PWAVIEKVKPYIKQNGVILASIPNVSHI------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLR 170 (230)
T ss_dssp EESCGGGSSC--HHHHHHHTGGGEEEEEEEEEEEECTTSH------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHH
T ss_pred ECChhhhcCC--HHHHHHHHHHHcCCCCEEEEEeCCcchH------HHHHHHhcCCceeccCCCCCcceEEEecHHHHHH
Confidence 9999999976 5799999999999999999987543221 0000000 00000 0001124579999999
Q ss_pred HHHHcCCcceeEEEcc
Q 018405 331 LAIKAGFKGVNYEYGA 346 (356)
Q Consensus 331 ll~~aGf~~~~~~~~~ 346 (356)
+++++||+++++....
T Consensus 171 ~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 171 MFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHTTEEEEEEEEEE
T ss_pred HHHHcCCeEEEEEecc
Confidence 9999999999887653
No 79
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=99.58 E-value=7.1e-15 Score=132.41 Aligned_cols=163 Identities=18% Similarity=0.151 Sum_probs=110.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCC--------CCC
Q 018405 168 VFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPS--------YLG 237 (356)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~--------~~~ 237 (356)
.|.+....+.......+.. +. ..+..+|||||||+|..+..+++.+ +..+++++|. +.+++.+++ .++
T Consensus 13 ~y~~~rp~y~~~~~~~l~~-~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 90 (299)
T 3g5t_A 13 RYSSSRPSYPSDFYKMIDE-YH-DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90 (299)
T ss_dssp HHHHHSCCCCHHHHHHHHH-HC-CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred HHhhcCCCCCHHHHHHHHH-Hh-cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence 3443333333334444443 32 3577899999999999999999987 8999999996 888877754 368
Q ss_pred ceEEEccCCC-CCCC------C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh
Q 018405 238 IEHVGGDFFE-SVPE------A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI 308 (356)
Q Consensus 238 v~~~~~D~~~-~~~~------~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~ 308 (356)
++++.+|+.+ +.+. + |+|++..++||+ + ...+|++++++|+|||.+++.+...+...... .....
T Consensus 91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~~~ 164 (299)
T 3g5t_A 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYADPIFPDYP---EFDDL 164 (299)
T ss_dssp EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEEEECTTCG---GGTTH
T ss_pred eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecCCccccCcH---HHHHH
Confidence 9999999988 5544 3 999999999999 3 78999999999999999999554332111111 01111
Q ss_pred hhhhhhh---hcCCCccCCHHHHHHHHHHcCCc
Q 018405 309 LDTICLF---QVPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 309 ~~~~~~~---~~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
+.-.... ..+.......+.+.++++++||.
T Consensus 165 ~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp 197 (299)
T 3g5t_A 165 MIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLD 197 (299)
T ss_dssp HHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCC
T ss_pred HHHhccCcccccchhhchhhHHHHHhhhccCCC
Confidence 1111100 00001114566789999999994
No 80
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=99.58 E-value=1.1e-14 Score=127.72 Aligned_cols=132 Identities=9% Similarity=-0.053 Sum_probs=102.6
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------------------CCCceEEEccCCC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------------------YLGIEHVGGDFFE 247 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------------~~~v~~~~~D~~~ 247 (356)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.|++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999986 568999996 888776632 1578999999998
Q ss_pred -CCC--CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccC
Q 018405 248 -SVP--EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRER 323 (356)
Q Consensus 248 -~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (356)
+.+ .. |+|++..++|++++++...++++++++|+|||+++++....+... .. . .....
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-----------~~------g-~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-----------HA------G-PPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-----------CC------C-SSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-----------CC------C-CCCCC
Confidence 543 33 999999999999988888999999999999999987654432210 00 0 01125
Q ss_pred CHHHHHHHHHHcCCcceeEEE
Q 018405 324 TKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 324 t~~e~~~ll~~aGf~~~~~~~ 344 (356)
+++++.++++. +|+++....
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~ 226 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEE 226 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEec
Confidence 89999999987 599877654
No 81
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=99.54 E-value=1.3e-14 Score=136.84 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC------CCC
Q 018405 178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE------SVP 250 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~------~~~ 250 (356)
......+++.+. ..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. ++......+.. +++
T Consensus 93 ~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 93 AMLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRT 168 (416)
T ss_dssp HHHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccC
Confidence 334556677666 667889999999999999999985 458999996 8888888765 34433322211 222
Q ss_pred -CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405 251 -EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY 328 (356)
Q Consensus 251 -~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 328 (356)
.. |+|++.+++||+++ ...+|++++++|+|||++++..+..... .. ...++... ......++.++|
T Consensus 169 ~~~fD~I~~~~vl~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~------~~-~~~~~~~~---~~~~~~~s~~~l 236 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPY--VQSVLEGVDALLAPDGVFVFEDPYLGDI------VA-KTSFDQIF---DEHFFLFSATSV 236 (416)
T ss_dssp HCCEEEEEEESCGGGCTT--HHHHHHHHHHHEEEEEEEEEEEECHHHH------HH-HTCGGGCS---TTCCEECCHHHH
T ss_pred CCCEEEEEECChHHhcCC--HHHHHHHHHHHcCCCeEEEEEeCChHHh------hh-hcchhhhh---hhhhhcCCHHHH
Confidence 23 99999999999965 8999999999999999999965543210 00 00111110 123456799999
Q ss_pred HHHHHHcCCcceeEEEcc
Q 018405 329 SELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 329 ~~ll~~aGf~~~~~~~~~ 346 (356)
.++++++||+++++...+
T Consensus 237 ~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 237 QGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHcCCEEEEEEEcc
Confidence 999999999999887754
No 82
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=99.54 E-value=7.3e-15 Score=132.00 Aligned_cols=154 Identities=14% Similarity=0.022 Sum_probs=107.6
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CC-CC-C-cEEEec
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SV-PE-A-DTILMK 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~-~~-~-D~i~~~ 258 (356)
+.+..+|||||||+|.++..+++. +..+++++|. +.+++.++++ .+++++.+|+.+ +. +. . |+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 357789999999999999988776 5568999996 7777776543 358999999988 55 33 3 999999
Q ss_pred ccccC--CChHHHHHHHHHHHHhCCCCCEEEEEecccCCC--------CCCch----------hhh-hhhhhhhhhhhhc
Q 018405 259 WVLSS--FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV--------PENSA----------TSR-EISILDTICLFQV 317 (356)
Q Consensus 259 ~vlh~--~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~--------~~~~~----------~~~-~~~~~~~~~~~~~ 317 (356)
.++|+ .+.++...+|++++++|+|||++++..+..... ..... ... ....+.+......
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 99998 566778999999999999999999977542110 00000 000 0000000000000
Q ss_pred --CCCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 318 --PHGRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 318 --~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
.....++.++|.++++++||+++++...
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 0123468999999999999999988765
No 83
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*
Probab=99.54 E-value=3e-15 Score=134.41 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=85.7
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCC-C---
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFE-S--- 248 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~-~--- 248 (356)
+.+.++ ..+..+|||||||+|..+..+++. +.+++++|. +.+++.++++ .++.+..+|+.+ +
T Consensus 49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHH-HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHhc-ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 333343 446789999999999999999997 448999996 7888777431 468899999887 5
Q ss_pred CCCC--cEEEec-ccccCCCh-----HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 249 VPEA--DTILMK-WVLSSFDD-----EQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 249 ~~~~--D~i~~~-~vlh~~~~-----~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
++.. |+|++. +++||+++ ++..++|++++++|+|||++++..+
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4543 999998 99999987 7789999999999999999998764
No 84
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*
Probab=99.53 E-value=1.2e-13 Score=120.71 Aligned_cols=152 Identities=18% Similarity=0.242 Sum_probs=105.8
Q ss_pred HHHHHHhcCCCCCceEEEEcCCc--cHHHHHHHH-hCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC--
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGL--GATLNMIIS-KYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV-- 249 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~--G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-- 249 (356)
...++.+..-.+..+|||||||+ +..+..+++ ..|+.+++++|. |.+++.++.+ .+++++.+|+.++.
T Consensus 67 ~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~ 146 (277)
T 3giw_A 67 NRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASI 146 (277)
T ss_dssp HHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHH
T ss_pred HHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhh
Confidence 34444443123568999999997 444455544 679999999996 9999988653 36899999998731
Q ss_pred ---C---C------CcEEEecccccCCChHH-HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhh
Q 018405 250 ---P---E------ADTILMKWVLSSFDDEQ-SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQ 316 (356)
Q Consensus 250 ---~---~------~D~i~~~~vlh~~~~~~-~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (356)
+ . ...|+++.+|||+++++ ...+|++++++|+|||+|++.+...+..+ . ........+....
T Consensus 147 l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p--~---~~~~~~~~~~~~g 221 (277)
T 3giw_A 147 LDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP--Q---EVGRVAREYAARN 221 (277)
T ss_dssp HTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH--H---HHHHHHHHHHHTT
T ss_pred hcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH--H---HHHHHHHHHHhcC
Confidence 1 1 13689999999999876 68999999999999999999887754321 0 1111122221111
Q ss_pred cCCCccCCHHHHHHHHHHcCCccee
Q 018405 317 VPHGRERTKQEYSELAIKAGFKGVN 341 (356)
Q Consensus 317 ~~~~~~~t~~e~~~ll~~aGf~~~~ 341 (356)
. ....||.+|+.++|. ||+.++
T Consensus 222 ~-p~~~rs~~ei~~~f~--Glelve 243 (277)
T 3giw_A 222 M-PMRLRTHAEAEEFFE--GLELVE 243 (277)
T ss_dssp C-CCCCCCHHHHHHTTT--TSEECT
T ss_pred C-CCccCCHHHHHHHhC--CCcccC
Confidence 1 245689999999995 998654
No 85
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*
Probab=99.52 E-value=1.9e-14 Score=127.06 Aligned_cols=141 Identities=16% Similarity=0.079 Sum_probs=103.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----C-----------------------------
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----L----------------------------- 236 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~----------------------------- 236 (356)
..+..+|||||||+|.++..++...+ .+++++|. +.+++.+++. +
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 34668999999999999998888665 57999996 7777766432 1
Q ss_pred --Cc-eEEEccCCC-CC-CC----C-cEEEecccccCCCh--HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhh
Q 018405 237 --GI-EHVGGDFFE-SV-PE----A-DTILMKWVLSSFDD--EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR 304 (356)
Q Consensus 237 --~v-~~~~~D~~~-~~-~~----~-D~i~~~~vlh~~~~--~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~ 304 (356)
++ .++.+|+.+ +. +. . |+|++..++|+++. ++...+|++++++|+|||++++.+......
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-------- 204 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-------- 204 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce--------
Confidence 17 899999987 22 33 3 99999999994432 468899999999999999999988543210
Q ss_pred hhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEcc
Q 018405 305 EISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
....+.. . .....+.++|.++|+++||+++++....
T Consensus 205 -~~~~~~~----~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 205 -YMIGEQK----F-SSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EEETTEE----E-ECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EEcCCcc----c-cccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 0000000 0 1234589999999999999999877643
No 86
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=99.52 E-value=6.2e-15 Score=126.23 Aligned_cols=100 Identities=22% Similarity=0.243 Sum_probs=83.3
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCCCCCC-C-cEEEecccccC
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFESVPE-A-DTILMKWVLSS 263 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~~~~~-~-D~i~~~~vlh~ 263 (356)
..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++ .++++++.+|+.+..+. . |+|++..++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 5577899999999999999999875 47899996 777776654 25799999999883343 3 99999999999
Q ss_pred CCh-HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 264 FDD-EQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 264 ~~~-~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
+++ +...++|++++++|+|||++++..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 986 45679999999999999999996653
No 87
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=99.52 E-value=1e-14 Score=128.91 Aligned_cols=139 Identities=14% Similarity=0.059 Sum_probs=98.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC---------------------------------
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY--------------------------------- 235 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~--------------------------------- 235 (356)
..+..+|||||||+|.++..++.. +. +++++|. +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 346689999999999887655543 33 6999996 8887765431
Q ss_pred --CCce-EEEccCCCC--CC---C-C-cEEEecccccCC-C-hHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhh
Q 018405 236 --LGIE-HVGGDFFES--VP---E-A-DTILMKWVLSSF-D-DEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATS 303 (356)
Q Consensus 236 --~~v~-~~~~D~~~~--~~---~-~-D~i~~~~vlh~~-~-~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~ 303 (356)
.++. ++.+|+.+. .+ . . |+|+++.+|||. + .++..++|++++++|||||++++.+......
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~------- 203 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS------- 203 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-------
T ss_pred HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc-------
Confidence 0133 889999873 21 2 2 999999999985 2 3567899999999999999999987543211
Q ss_pred hhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 304 REISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
+ ...-.. . ....++.++|.++|+++||+++++...
T Consensus 204 -~--~~g~~~---~-~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 204 -Y--MVGKRE---F-SCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp -E--EETTEE---E-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -c--eeCCeE---e-eccccCHHHHHHHHHHCCCEEEEEeec
Confidence 0 000000 0 122358999999999999999887653
No 88
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}
Probab=99.52 E-value=5.3e-14 Score=125.80 Aligned_cols=139 Identities=19% Similarity=0.178 Sum_probs=106.0
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEE
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTI 255 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i 255 (356)
+++.++ ..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 112 ~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i 188 (286)
T 3m70_A 112 VVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFI 188 (286)
T ss_dssp HHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEE
T ss_pred HHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEE
Confidence 334444 346789999999999999999987 568999996 7777776543 278999999988 44444 999
Q ss_pred EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405 256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA 335 (356)
Q Consensus 256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 335 (356)
++..++||+++++...+|++++++|+|||.++++.....+..... ......++.+++.++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~- 251 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD- 251 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT-
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC-
Confidence 999999999988899999999999999999888776554321110 011234578889998865
Q ss_pred CCcceeEE
Q 018405 336 GFKGVNYE 343 (356)
Q Consensus 336 Gf~~~~~~ 343 (356)
|+++...
T Consensus 252 -~~~~~~~ 258 (286)
T 3m70_A 252 -WEFLEYN 258 (286)
T ss_dssp -SEEEEEE
T ss_pred -CEEEEEE
Confidence 8877654
No 89
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=99.52 E-value=9.1e-14 Score=121.83 Aligned_cols=105 Identities=24% Similarity=0.378 Sum_probs=84.7
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-c
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-D 253 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D 253 (356)
..+++... ..+..+|||||||+|..+..+++. +.+++++|. +.+++.++++ .+++++.+|+.+ +.+.. |
T Consensus 31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 44455444 456789999999999999999986 568999996 8888777543 369999999987 55544 9
Q ss_pred EEEec-ccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 254 TILMK-WVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 254 ~i~~~-~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
+|++. ..+++++.++..++|++++++|+|||++++.
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 99986 5667777778999999999999999999874
No 90
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=99.52 E-value=1.2e-13 Score=116.95 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=100.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC--cEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA--DTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~ 263 (356)
+. +|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++. +.|
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 44 9999999999999999886 568999996 7887777653 378999999988 65543 999985 345
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
++.++...+|++++++|+|||++++.+....... . ..... ......++++++.++++ ||+++.+.
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-------~--~~~~~----~~~~~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ-------Y--NTGGP----KDLDLLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG-------G--TSCCS----SSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc-------C--CCCCC----CcceeecCHHHHHHHhc--CceEEEEE
Confidence 6767889999999999999999999887543210 0 00000 00123579999999999 99999865
Q ss_pred Ec
Q 018405 344 YG 345 (356)
Q Consensus 344 ~~ 345 (356)
..
T Consensus 170 ~~ 171 (202)
T 2kw5_A 170 NL 171 (202)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 91
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=99.51 E-value=7.2e-14 Score=119.10 Aligned_cols=138 Identities=15% Similarity=0.127 Sum_probs=99.2
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEE
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTIL 256 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~ 256 (356)
.++..+. .+..+|||||||+|.++..+ +. +++++|. +.+++.+++. ++++++.+|+.+ +.++. |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 4444443 36789999999999998877 44 8999996 8888777654 689999999988 66553 9999
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcC
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAG 336 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aG 336 (356)
+.+++||+++ ..++|++++++|+|||++++.++..... ...........-.........+|.+++.++++ |
T Consensus 101 ~~~~l~~~~~--~~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 101 LFTTLEFVED--VERVLLEARRVLRPGGALVVGVLEALSP-----WAALYRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp EESCTTTCSC--HHHHHHHHHHHEEEEEEEEEEEECTTSH-----HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred EcChhhhcCC--HHHHHHHHHHHcCCCCEEEEEecCCcCc-----HHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 9999999965 6899999999999999999987654321 01000000000000001244579999999999 7
No 92
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=99.50 E-value=1.1e-14 Score=130.42 Aligned_cols=138 Identities=14% Similarity=0.119 Sum_probs=96.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----C-------------------------------
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----L------------------------------- 236 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~------------------------------- 236 (356)
+..+|||||||+|.+. .++...+..+++++|+ +.+++.++++ +
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3444445669999996 8887765431 0
Q ss_pred -CceEEEccCCC--C-----CCC--CcEEEecccccCCCh--HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhh
Q 018405 237 -GIEHVGGDFFE--S-----VPE--ADTILMKWVLSSFDD--EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSR 304 (356)
Q Consensus 237 -~v~~~~~D~~~--~-----~~~--~D~i~~~~vlh~~~~--~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~ 304 (356)
.++++.+|+.+ + .++ .|+|++..+||++++ ++..++|++++++|||||+|++.+......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~-------- 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW-------- 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE--------
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce--------
Confidence 03466668876 2 223 299999999999543 368999999999999999999986442210
Q ss_pred hhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 305 EISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
....+. .. ....++.++|.++|+++||+++++...
T Consensus 222 -~~~~~~----~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 222 -YLAGEA----RL-TVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp -EEETTE----EE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -EEcCCe----ee-eeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 000000 00 123468999999999999999887654
No 93
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=99.49 E-value=4e-13 Score=110.58 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=96.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCC--cEEEecccccCCChH--
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEA--DTILMKWVLSSFDDE-- 267 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~--D~i~~~~vlh~~~~~-- 267 (356)
+..+|||+|||+|.++..+++.. +++++|. +.+++. .++++++.+|+.++.+.. |+|+++..+|+.++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~ 96 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPI 96 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTT
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCcccc
Confidence 56799999999999999999876 8999996 778877 468999999998865533 999999888865443
Q ss_pred -----HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeE
Q 018405 268 -----QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNY 342 (356)
Q Consensus 268 -----~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 342 (356)
+...+++++.+.+ |||++++.+... .+.+++.++++++||+...+
T Consensus 97 ~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~~ 146 (170)
T 3q87_B 97 IGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRIL 146 (170)
T ss_dssp TBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEEE
T ss_pred ccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEEE
Confidence 4578899999999 999999966321 13678899999999999887
Q ss_pred EEcc
Q 018405 343 EYGA 346 (356)
Q Consensus 343 ~~~~ 346 (356)
....
T Consensus 147 ~~~~ 150 (170)
T 3q87_B 147 KVRK 150 (170)
T ss_dssp EEEE
T ss_pred Eeec
Confidence 7654
No 94
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*
Probab=99.49 E-value=1.2e-13 Score=126.65 Aligned_cols=114 Identities=15% Similarity=0.206 Sum_probs=93.0
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC---------------CCCceEEEc
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS---------------YLGIEHVGG 243 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------------~~~v~~~~~ 243 (356)
.+..+++.+. +.+..+|||||||+|..+..++...+..+++++|+ +.+++.|+. .++|+++.+
T Consensus 161 ~i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G 239 (438)
T 3uwp_A 161 LVAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 239 (438)
T ss_dssp HHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence 3456777776 78889999999999999999998887777999997 666555532 257999999
Q ss_pred cCCC-CCC----CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCC
Q 018405 244 DFFE-SVP----EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVP 297 (356)
Q Consensus 244 D~~~-~~~----~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~ 297 (356)
|+.+ +++ .+|+|+++++++ + ++..+.|+++++.|||||+|++.|.+.+.+.
T Consensus 240 D~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 240 DFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp CTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred cccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 9998 553 459999987764 3 5578889999999999999999999887654
No 95
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=99.48 E-value=4e-13 Score=119.51 Aligned_cols=144 Identities=21% Similarity=0.193 Sum_probs=109.0
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EA 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~ 252 (356)
...+++.++ .+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.++.+ ..
T Consensus 99 ~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 176 (276)
T 2b3t_A 99 VEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQ 176 (276)
T ss_dssp HHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCC
T ss_pred HHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCC
Confidence 344555443 4567999999999999999999999999999996 8887777543 479999999988543 33
Q ss_pred -cEEEec-------------ccccCCCh----------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhh
Q 018405 253 -DTILMK-------------WVLSSFDD----------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISI 308 (356)
Q Consensus 253 -D~i~~~-------------~vlh~~~~----------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~ 308 (356)
|+|++. .+++|.|. +....+++++.+.|+|||++++...
T Consensus 177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------------- 239 (276)
T 2b3t_A 177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------------- 239 (276)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------
T ss_pred ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------
Confidence 999997 35554432 3468899999999999999998410
Q ss_pred hhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEEcc-CceeEEEEeC
Q 018405 309 LDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEYGA-CNLYVMEFLK 356 (356)
Q Consensus 309 ~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~~ 356 (356)
..+.+++.++++++||+.+++.... +...++.+++
T Consensus 240 -------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 -------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp -------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred -------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 0246789999999999998887754 4444555543
No 96
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=99.48 E-value=5.9e-13 Score=112.84 Aligned_cols=121 Identities=13% Similarity=0.129 Sum_probs=98.0
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC---C
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP---E 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~---~ 251 (356)
..++..+. ..+..+|||||||+|.++..+++..|..+++++|. +.+++.++++ ++++++.+|+.+..+ .
T Consensus 30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 108 (204)
T 3e05_A 30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD 108 (204)
T ss_dssp HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence 34555565 67789999999999999999999999999999996 8888777643 679999999977332 3
Q ss_pred CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
.|+|++..+++ +...+++++.++|+|||++++..... .+.+++.++
T Consensus 109 ~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------------------~~~~~~~~~ 154 (204)
T 3e05_A 109 PDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL-----------------------------DTLTKAVEF 154 (204)
T ss_dssp CSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc-----------------------------ccHHHHHHH
Confidence 49999988876 36799999999999999999954321 135678889
Q ss_pred HHHcCC
Q 018405 332 AIKAGF 337 (356)
Q Consensus 332 l~~aGf 337 (356)
++++||
T Consensus 155 l~~~g~ 160 (204)
T 3e05_A 155 LEDHGY 160 (204)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 999998
No 97
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=99.48 E-value=5e-13 Score=115.62 Aligned_cols=141 Identities=18% Similarity=0.148 Sum_probs=99.9
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC----CCCCCceEEEccCCCC-----CCCC-cEEEecc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA----PSYLGIEHVGGDFFES-----VPEA-DTILMKW 259 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~~-----~~~~-D~i~~~~ 259 (356)
+.+..+|||+|||+|.++..+++.+|..+++++|. +.+++.+ +..+++.++.+|+.++ .+.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 56778999999999999999999988789999996 7766543 3347899999998762 2233 9988
Q ss_pred cccCCChH-HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405 260 VLSSFDDE-QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 260 vlh~~~~~-~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
|++++. ....+|+++++.|+|||++++. .......... . ......+++. +++++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~---------~---------~~~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTK---------D---------PKEIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSS---------C---------HHHHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCC---------C---------HHHhhHHHHH-HHHHCCCE
Confidence 455433 3467799999999999999996 2111100000 0 0001246787 89999999
Q ss_pred ceeEEEccCc---eeEEEEeC
Q 018405 339 GVNYEYGACN---LYVMEFLK 356 (356)
Q Consensus 339 ~~~~~~~~~~---~~vi~~~~ 356 (356)
.++..+.... ..++.++|
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEE
T ss_pred EEEEEccCCCccceEEEEEEe
Confidence 9998877543 56666553
No 98
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}
Probab=99.48 E-value=1.1e-13 Score=117.38 Aligned_cols=129 Identities=12% Similarity=0.053 Sum_probs=102.2
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCCC-cEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPEA-DTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~~-D~i~~~~vlh~ 263 (356)
.+..+|||||||+|.++..+++ .+..+++++|. +.+++.++++ .++++..+|+.+..+.. |+|++..++|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4678999999999999999776 56779999996 8887777543 34999999998754444 99999887764
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
...++++++++|+|||++++.+... .+.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~-----------------------------~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDY-----------------------------LQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCc-----------------------------ccHHHHHHHHHHcCCceEEee
Confidence 4789999999999999999955332 136788999999999999888
Q ss_pred EccCceeEEEEe
Q 018405 344 YGACNLYVMEFL 355 (356)
Q Consensus 344 ~~~~~~~vi~~~ 355 (356)
......+++.-.
T Consensus 184 ~~~~w~~~~~~~ 195 (205)
T 3grz_A 184 RAGRWIGLAISR 195 (205)
T ss_dssp EETTEEEEEEEE
T ss_pred ccCCEEEEEEec
Confidence 775555555443
No 99
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}
Probab=99.46 E-value=7e-14 Score=119.88 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=95.6
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHh----CCC------CCCceEEEccCCC-CCCCC-cEEEe
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKN----APS------YLGIEHVGGDFFE-SVPEA-DTILM 257 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~------~~~v~~~~~D~~~-~~~~~-D~i~~ 257 (356)
..+..+|||||||+|.++..+++.+|+.+++++|. +.+++. +++ .++++++.+|+.+ +++.. |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 55778999999999999999999999999999996 664443 322 2589999999988 65544 66653
Q ss_pred cc---cc--cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405 258 KW---VL--SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 258 ~~---vl--h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
.. .+ ||+++ ...+|++++++|+|||++++........... ...... ......+..+++.+++
T Consensus 105 ~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGS--SPEMLRGMAAVCRPGASFLVALNLHAWRPSV------PEVGEH-----PEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTS--SSHHHHHHHHTEEEEEEEEEEEEGGGBTTBC------GGGTTC-----CCCCHHHHHHHHHHHH
T ss_pred Eccchhhhhhhhcc--HHHHHHHHHHHcCCCcEEEEEeccccccccc------cccccC-----CccchHHHHHHHHHHH
Confidence 22 22 24433 3799999999999999999943221111000 000000 0011112345688899
Q ss_pred HHcCCcceeEEEc
Q 018405 333 IKAGFKGVNYEYG 345 (356)
Q Consensus 333 ~~aGf~~~~~~~~ 345 (356)
+++||++.++...
T Consensus 172 ~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 172 AEAGWKLADCRYL 184 (218)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCCceeeecc
Confidence 9999999887664
No 100
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=99.45 E-value=6.7e-13 Score=111.09 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=109.0
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C--CceEEEccCCCCCCC-
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L--GIEHVGGDFFESVPE- 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~~~- 251 (356)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.++.. + +++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 45566665 567789999999999999999987 778999996 7777766542 3 499999999885443
Q ss_pred C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405 252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE 330 (356)
Q Consensus 252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 330 (356)
. |+|++...+|+ ..+....+++++++.|+|||++++...... ...++.+
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 168 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ-----------------------------GAKSLAK 168 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTH-----------------------------HHHHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCC-----------------------------ChHHHHH
Confidence 3 99999888875 345688999999999999999999764321 1235677
Q ss_pred HHHHcCCcceeEEEccCceeEEEEeC
Q 018405 331 LAIKAGFKGVNYEYGACNLYVMEFLK 356 (356)
Q Consensus 331 ll~~aGf~~~~~~~~~~~~~vi~~~~ 356 (356)
.+++. |..++++....++.++.++|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 77777 77777777777888887765
No 101
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.44 E-value=4.8e-14 Score=122.50 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=92.6
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC---CCCCC--cEEE----
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE---SVPEA--DTIL---- 256 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~~~~--D~i~---- 256 (356)
.+..+|||||||+|..+..+++..|. +++++|. |.+++.|++. .++.++.+|... +.++. |.|+
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 46789999999999999999887764 7899996 8888887653 457888888654 34443 7765
Q ss_pred -ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHc
Q 018405 257 -MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKA 335 (356)
Q Consensus 257 -~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~a 335 (356)
....++|+ .+...++++++++|||||++++.+...... .....++ .......+.+...|.++
T Consensus 138 ~~~~~~~~~--~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHT--HQFNFIKNHAFRLLKPGGVLTYCNLTSWGE-------LMKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTT--HHHHHHHHTHHHHEEEEEEEEECCHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhh--cchhhhhhhhhheeCCCCEEEEEecCCchh-------hhhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 46667777 458999999999999999998865332110 0000000 00112345677888999
Q ss_pred CCcceeE
Q 018405 336 GFKGVNY 342 (356)
Q Consensus 336 Gf~~~~~ 342 (356)
||++..+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9997654
No 102
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*
Probab=99.43 E-value=6.1e-13 Score=114.60 Aligned_cols=146 Identities=10% Similarity=-0.016 Sum_probs=93.6
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc--hHHHHhC---CCC------CCceEEEccCCC-CCCCCcEEEecc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL--PYVIKNA---PSY------LGIEHVGGDFFE-SVPEADTILMKW 259 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a---~~~------~~v~~~~~D~~~-~~~~~D~i~~~~ 259 (356)
.+..+|||||||+|.++..++++.|+.+++++|. +.+++.| +++ +++.++.+|+.+ +....|.|.+..
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~ 102 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS 102 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence 4678999999999999999999899999999995 4454444 432 578999999877 321126665555
Q ss_pred cccCCChH------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018405 260 VLSSFDDE------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAI 333 (356)
Q Consensus 260 vlh~~~~~------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 333 (356)
+.+.|+.. +...+|++++++|||||+++++....+... .. .. ...... .+.......+++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~-~~--~~--~~~~~~----~~~~~~~~~~el~~~l~ 173 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYE-EA--EI--KKRGLP----LLSKAYFLSEQYKAELS 173 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSHHHHHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccch-hc--hh--hhcCCC----CCChhhcchHHHHHHHH
Confidence 55444321 124689999999999999999554433210 00 00 000000 00000112235999999
Q ss_pred HcCCcceeEEEcc
Q 018405 334 KAGFKGVNYEYGA 346 (356)
Q Consensus 334 ~aGf~~~~~~~~~ 346 (356)
++||++..+....
T Consensus 174 ~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 174 NSGFRIDDVKELD 186 (225)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HcCCCeeeeeecC
Confidence 9999988876553
No 103
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=99.43 E-value=5.2e-13 Score=120.13 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=98.8
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----C--------CceEEEccCCC---------CCC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----L--------GIEHVGGDFFE---------SVP 250 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~--------~v~~~~~D~~~---------~~~ 250 (356)
+..+|||||||+|..+..++.. ...+++++|+ +.+++.|+++ . +++|.+.|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4689999999999877766653 3468999996 8888888753 1 15677888732 234
Q ss_pred CC--cEEEecccccCC-ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCC---C--------Cchh-hhhhhh----hhh
Q 018405 251 EA--DTILMKWVLSSF-DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVP---E--------NSAT-SREISI----LDT 311 (356)
Q Consensus 251 ~~--D~i~~~~vlh~~-~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~---~--------~~~~-~~~~~~----~~~ 311 (356)
.+ |+|+|..++|+. ++++...+|++++++|+|||++++..+....-. . .... ..+... .+.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 206 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR 206 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence 33 999999999974 445678999999999999999998765321100 0 0000 000000 000
Q ss_pred --hhhhh--cCC--CccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 312 --ICLFQ--VPH--GRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 312 --~~~~~--~~~--~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
.+... ... -...+.+++.++++++||+++.....
T Consensus 207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f 246 (302)
T 2vdw_A 207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF 246 (302)
T ss_dssp EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence 00000 000 12457899999999999999887654
No 104
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=99.42 E-value=1.5e-13 Score=117.17 Aligned_cols=138 Identities=15% Similarity=0.085 Sum_probs=90.2
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCC----
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVP---- 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~---- 250 (356)
...+++.+....+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|+.++.+
T Consensus 18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 97 (215)
T 4dzr_A 18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAE 97 (215)
T ss_dssp HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhh
Confidence 345555555236789999999999999999999999999999996 8888888764 157888888877433
Q ss_pred --CC-cEEEeccccc------CCChHHH------------------HHHHHHHHHhCCCCCEEEEEecccCCCCCCchhh
Q 018405 251 --EA-DTILMKWVLS------SFDDEQS------------------LKLLKNCYKALPDGGKLLNVNVTIPEVPENSATS 303 (356)
Q Consensus 251 --~~-D~i~~~~vlh------~~~~~~~------------------~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~ 303 (356)
.. |+|++....+ +++.+.. ..++++++++|+|||++++++...
T Consensus 98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------- 167 (215)
T 4dzr_A 98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---------- 167 (215)
T ss_dssp TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT----------
T ss_pred ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC----------
Confidence 23 9999964443 3322221 789999999999999965544311
Q ss_pred hhhhhhhhhhhhhcCCCccCCHHHHHHHHH--HcCCcceeEEEccC
Q 018405 304 REISILDTICLFQVPHGRERTKQEYSELAI--KAGFKGVNYEYGAC 347 (356)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~~~~~~~~~ 347 (356)
...+++.++++ ++||..+++.+...
T Consensus 168 -------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~ 194 (215)
T 4dzr_A 168 -------------------NQADEVARLFAPWRERGFRVRKVKDLR 194 (215)
T ss_dssp -------------------SCHHHHHHHTGGGGGGTEECCEEECTT
T ss_pred -------------------ccHHHHHHHHHHhhcCCceEEEEEecC
Confidence 13567788888 89998888877653
No 105
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=99.42 E-value=1.4e-12 Score=128.37 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=89.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCC------------CCCceEEEccCCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPS------------YLGIEHVGGDFFE 247 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~ 247 (356)
..+++.+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.|++ .++++++.+|+.+
T Consensus 711 e~LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d 789 (950)
T 3htx_A 711 EYALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE 789 (950)
T ss_dssp HHHHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred HHHHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence 34444444 4467899999999999999999988 5679999996 888877754 2579999999988
Q ss_pred -CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 248 -SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 248 -~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
+.+.. |+|++..++||++++....++++++++|+|| .++|..+.
T Consensus 790 Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 790 FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 55533 9999999999999988889999999999999 77776543
No 106
>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}
Probab=99.41 E-value=3.2e-13 Score=118.25 Aligned_cols=107 Identities=10% Similarity=0.105 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CC------CC-
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SV------PE- 251 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~------~~- 251 (356)
...+++.++ ..+..+|||||||+|.++..++++ +.+++++|. +.+++.++++..-.++..|+.+ +. +.
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 345666665 777899999999999999999986 468999996 8888877654111123333322 11 22
Q ss_pred CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
.|+|++..++||++.++...+|++++++| |||++++...
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 39999999999999888999999999999 9999998643
No 107
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=99.39 E-value=5.9e-13 Score=120.63 Aligned_cols=99 Identities=19% Similarity=0.211 Sum_probs=80.7
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------------CCceEEEccCCC-C----CC--
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------------LGIEHVGGDFFE-S----VP-- 250 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------~~v~~~~~D~~~-~----~~-- 250 (356)
.+..+|||||||+|..+..+++. +..+++++|. +.+++.++++ .+++++.+|+.+ + ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 36789999999999999999874 6779999996 7777766542 268999999987 4 32
Q ss_pred C-C-cEEEecccccCC--ChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 251 E-A-DTILMKWVLSSF--DDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 251 ~-~-D~i~~~~vlh~~--~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
. . |+|++..++|+. +.++...+|++++++|+|||.+++..+
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTP 156 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 2 3 999999999987 445678999999999999999999765
No 108
>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*
Probab=99.39 E-value=3.6e-13 Score=118.96 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=80.2
Q ss_pred CCceEEEEcCCccH----HHHHHHHhCC----CCeEEEccc-hHHHHhCCCC----------------------------
Q 018405 193 HVKKLVDVGGGLGA----TLNMIISKYP----RIKGINYDL-PYVIKNAPSY---------------------------- 235 (356)
Q Consensus 193 ~~~~vLDiG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~~---------------------------- 235 (356)
+..+|+|+|||+|. ++..+++.+| +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 5666666655 478999996 8888777532
Q ss_pred ---------CCceEEEccCCC-CCC--CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 236 ---------LGIEHVGGDFFE-SVP--EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 236 ---------~~v~~~~~D~~~-~~~--~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
.+|.|..+|+.+ +++ .. |+|+|.++|+|++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 258899999998 565 33 999999999999988889999999999999999988
No 109
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=99.39 E-value=1e-12 Score=108.55 Aligned_cols=102 Identities=20% Similarity=0.281 Sum_probs=82.1
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C-CceEEEccCCCCCC---
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L-GIEHVGGDFFESVP--- 250 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~~--- 250 (356)
..+++.+. ..+..+|||||||+|.++..+++.+|..+++++|. +.+++.++++ + ++ ++.+|..+..+
T Consensus 15 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~ 92 (178)
T 3hm2_A 15 ALAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP 92 (178)
T ss_dssp HHHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred HHHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence 34555555 66788999999999999999999999999999996 7777776542 2 67 88888866333
Q ss_pred C-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 251 E-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 251 ~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
. .|+|++..++|+ ..+++++++.|+|||++++.+.
T Consensus 93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 93 DNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp SCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 2 399999999987 6789999999999999998654
No 110
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=99.38 E-value=3e-13 Score=117.47 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=77.2
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC---CCCCC--cEEEe-cc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE---SVPEA--DTILM-KW 259 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~---~~~~~--D~i~~-~~ 259 (356)
.+..+|||||||+|.++..+++..+ .+++++|. +.+++.++++ .+++++.+|+.+ +++++ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4678999999999999999966443 38999996 8887777542 468999999865 35543 99998 55
Q ss_pred c--ccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 260 V--LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 260 v--lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
. .+++..+....+|++++++|||||++++++..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 33444445668899999999999999997754
No 111
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=99.37 E-value=2.5e-12 Score=110.31 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=94.3
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhC----CCCCCceEEEccCCCC--CC---CC-cEEEec
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNA----PSYLGIEHVGGDFFES--VP---EA-DTILMK 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a----~~~~~v~~~~~D~~~~--~~---~~-D~i~~~ 258 (356)
+++..+|||+|||+|.++..+++.. |+-+++++|. +.+++.+ .+.+++..+.+|...+ .+ .. |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 7789999999999999999999864 8889999996 7776554 4457899999988763 12 22 887753
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
+++. ++...+++++++.|||||+++|....... +.. .+.. ....+-.+.|+++||+
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~--------------d~~----~p~~--~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSI--------------DVT----TEPS--EVYKREIKTLMDGGLE 210 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHH--------------HHH----TCCC--HHHHHHHHHHHHTTCC
T ss_pred --ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccC--------------CCC----CChH--HHHHHHHHHHHHCCCE
Confidence 3333 34688999999999999999986432211 100 0000 1123445678999999
Q ss_pred ceeEEEccC
Q 018405 339 GVNYEYGAC 347 (356)
Q Consensus 339 ~~~~~~~~~ 347 (356)
.++.....+
T Consensus 211 l~e~i~L~p 219 (233)
T 4df3_A 211 IKDVVHLDP 219 (233)
T ss_dssp EEEEEECTT
T ss_pred EEEEEccCC
Confidence 998877643
No 112
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=99.36 E-value=1.2e-12 Score=107.43 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=79.1
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~ 263 (356)
.++.+|||+|||+|.++..+....|+++++++|. +.+++.++++ ...++...|..+ +.+.. |+|++..++|+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 4688999999999999999999999999999996 8888887653 112344477766 33343 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+ ++....+.++.++|+|||.+|-.+
T Consensus 128 L--~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 128 L--KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp H--HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred h--hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 9 446677779999999999998877
No 113
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=111.78 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=84.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCCC--cEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPEA--DTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~ 263 (356)
.+..+|||||||+|.++..+++..+. +++++|. +.+++.+++. ++++++.+|+.+ +++.. |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 56789999999999999999998654 8999996 7777766542 589999999988 65543 99999999987
Q ss_pred CC-------------hHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 264 FD-------------DEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 264 ~~-------------~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
+. .++..++|++++++|+|||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 65 3467899999999999999999988654
No 114
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=99.35 E-value=1.5e-11 Score=104.32 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=93.7
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C-CceEEEccCCCCC---CC
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L-GIEHVGGDFFESV---PE 251 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~-~v~~~~~D~~~~~---~~ 251 (356)
.++..+. ..+..+|||||||+|.++..+++. ..+++++|. +.+++.++++ + +++++.+|+.+.. +.
T Consensus 46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence 3455555 677889999999999999999987 778999996 8888777543 3 7999999998722 23
Q ss_pred CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 252 ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
.|+|++...+ + .. +++++.++|+|||++++..... .+..++.++
T Consensus 123 ~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~ 166 (204)
T 3njr_A 123 PEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQL 166 (204)
T ss_dssp CSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHH
Confidence 4999987654 1 34 9999999999999999854321 124577788
Q ss_pred HHHcCCcceeEE
Q 018405 332 AIKAGFKGVNYE 343 (356)
Q Consensus 332 l~~aGf~~~~~~ 343 (356)
+++.|+++.++.
T Consensus 167 l~~~g~~i~~i~ 178 (204)
T 3njr_A 167 HARHGGQLLRID 178 (204)
T ss_dssp HHHHCSEEEEEE
T ss_pred HHhCCCcEEEEE
Confidence 899998877653
No 115
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3
Probab=99.34 E-value=9.5e-12 Score=105.93 Aligned_cols=137 Identities=13% Similarity=0.041 Sum_probs=94.9
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH----HHhCCCCCCceEEEccCCCC-----CCCC-cEEEecc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV----IKNAPSYLGIEHVGGDFFES-----VPEA-DTILMKW 259 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~-----~~~~-D~i~~~~ 259 (356)
+++..+|||||||+|..+..+++..+..+++++|. +.+ .+.++...++.++.+|+..+ .++. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 55778999999999999999999888778999996 653 44454456888999998763 2333 999986
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH----HHHHHc
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS----ELAIKA 335 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~----~ll~~a 335 (356)
+.++ ++...+|++++++|||||++++.-...+ .+ . ..+.+++. +.++++
T Consensus 134 ~~~~---~~~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~---------~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQK---NQIEILKANAEFFLKEKGEVVIMVKARS--------------ID---------S-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCST---THHHHHHHHHHHHEEEEEEEEEEEEHHH--------------HC---------T-TSCHHHHHHHHHHHHHTT
T ss_pred ccCh---hHHHHHHHHHHHHhCCCCEEEEEEecCC--------------cc---------c-cCCHHHHHHHHHHHHHhh
Confidence 3322 3355679999999999999999732110 00 0 01233321 237888
Q ss_pred CCcceeEEEcc---CceeEEEEeC
Q 018405 336 GFKGVNYEYGA---CNLYVMEFLK 356 (356)
Q Consensus 336 Gf~~~~~~~~~---~~~~vi~~~~ 356 (356)
|++++..... ..+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 9999987763 2456666553
No 116
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*
Probab=99.34 E-value=1.8e-12 Score=113.83 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=96.7
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---C--CceEEEccCCCCCCC-C-cEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---L--GIEHVGGDFFESVPE-A-DTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v~~~~~D~~~~~~~-~-D~i~~~~vlh~ 263 (356)
.+..+|||+|||+|.++..+++..+ +++++|. +.+++.++++ . .+++..+|+.+..+. . |+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4678999999999999999888755 8999996 7777766542 1 288999988764432 3 9999865543
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
....+++++++.|+|||++++.+... .+.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~-----------------------------~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILK-----------------------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEG-----------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeecc-----------------------------CCHHHHHHHHHHCCCEEEEEe
Confidence 35789999999999999999965321 136789999999999998877
Q ss_pred EccCceeEEEEeC
Q 018405 344 YGACNLYVMEFLK 356 (356)
Q Consensus 344 ~~~~~~~vi~~~~ 356 (356)
.. .....+.++|
T Consensus 243 ~~-~~W~~l~~~k 254 (254)
T 2nxc_A 243 AE-GEWVLLAYGR 254 (254)
T ss_dssp EE-TTEEEEEEEC
T ss_pred cc-CCeEEEEEEC
Confidence 65 3344444544
No 117
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=99.33 E-value=2.1e-12 Score=113.40 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=99.9
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE 251 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~ 251 (356)
...++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.++++ ++++++.+|+.+.+++
T Consensus 82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 160 (255)
T 3mb5_A 82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE 160 (255)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence 345566665 778899999999999999999998 78999999996 7888777643 4599999999886655
Q ss_pred C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018405 252 A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS 329 (356)
Q Consensus 252 ~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 329 (356)
. |+|++ +.++ ...+|+++.++|+|||++++..+..+ ..+++.
T Consensus 161 ~~~D~v~~-----~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 204 (255)
T 3mb5_A 161 ENVDHVIL-----DLPQ--PERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLH 204 (255)
T ss_dssp CSEEEEEE-----CSSC--GGGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCCC--HHHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHH
Confidence 4 99987 3443 46889999999999999999653211 135667
Q ss_pred HHHHHcC--CcceeEEEc
Q 018405 330 ELAIKAG--FKGVNYEYG 345 (356)
Q Consensus 330 ~ll~~aG--f~~~~~~~~ 345 (356)
++++++| |..+++...
T Consensus 205 ~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 205 EKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHTGGGBSCCEEECC
T ss_pred HHHHHcCCCccccEEEEE
Confidence 7888888 887776543
No 118
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=99.33 E-value=9.8e-13 Score=113.41 Aligned_cols=114 Identities=15% Similarity=0.124 Sum_probs=89.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC--CCC-CC--cEEEecccccCC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE--SVP-EA--DTILMKWVLSSF 264 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~--~~~-~~--D~i~~~~vlh~~ 264 (356)
.+..+|||||||+|.++..+++. +.+++++|. +.+++.++++ ++++++.+|+.+ +++ +. |+|++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 46789999999999999999987 568999996 8888877653 789999999965 444 33 999987
Q ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEEE
Q 018405 265 DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 265 ~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 344 (356)
.+...+|++++++|+|||+++.. +...+.+++.++++++||+...+..
T Consensus 119 --~~~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 119 --RGPTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp --SCCSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred --CCHHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 12568899999999999999910 0012345788888999998877654
Q ss_pred c
Q 018405 345 G 345 (356)
Q Consensus 345 ~ 345 (356)
.
T Consensus 167 ~ 167 (226)
T 3m33_A 167 V 167 (226)
T ss_dssp E
T ss_pred e
Confidence 3
No 119
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=99.33 E-value=3.2e-12 Score=106.49 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=90.0
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC--CCC-CC-cEEEec-
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE--SVP-EA-DTILMK- 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~~-~~-D~i~~~- 258 (356)
+++..+|||+|||+|.++..+++. ..+++++|. +.+++.++++ ++++++..|... ..+ +. |+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 457789999999999999999987 778999996 8888877653 578999877655 133 33 999876
Q ss_pred ccccCC------ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405 259 WVLSSF------DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 259 ~vlh~~------~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
..+++. ..++...+|+++++.|+|||++++......... . .......+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~--------------------~~~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGG-D--------------------MEKDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-------C--------------------HHHHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCC-H--------------------HHHHHHHHHHHhC
Confidence 333320 225567899999999999999999765432110 0 0001134555555
Q ss_pred HHcCCcceeEEEcc
Q 018405 333 IKAGFKGVNYEYGA 346 (356)
Q Consensus 333 ~~aGf~~~~~~~~~ 346 (356)
...+|.+.......
T Consensus 157 ~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 157 DQRVFTAMLYQPLN 170 (185)
T ss_dssp CTTTEEEEEEEESS
T ss_pred CCceEEEEEehhhc
Confidence 66778888776653
No 120
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Probab=99.33 E-value=7.9e-12 Score=106.73 Aligned_cols=98 Identities=19% Similarity=0.232 Sum_probs=78.3
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC--cEEEeccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA--DTILMKWV 260 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~--D~i~~~~v 260 (356)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 467999999999999999999999999999996 8887777542 589999999987 4 4443 99998865
Q ss_pred ccCCChH------HHHHHHHHHHHhCCCCCEEEEEe
Q 018405 261 LSSFDDE------QSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 261 lh~~~~~------~~~~~L~~~~~~L~pgG~lii~e 290 (356)
..+.... ....+|+++.++|+|||.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4322110 12589999999999999998854
No 121
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}
Probab=99.32 E-value=4.2e-12 Score=109.94 Aligned_cols=141 Identities=14% Similarity=0.010 Sum_probs=96.0
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hH----HHHhCCCCCCceEEEccCCCC--C---CCC-cEEEec
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PY----VIKNAPSYLGIEHVGGDFFES--V---PEA-DTILMK 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~----~~~~a~~~~~v~~~~~D~~~~--~---~~~-D~i~~~ 258 (356)
+.+..+|||+|||+|.++..+++.+ |..+++++|. +. +.+.++.+++++++.+|+.++ . +.. |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5677899999999999999999986 7789999996 54 345555457899999999872 2 223 999985
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
.. ..+....++++++++|+|||++++.-......... ... .+-..+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~---------~~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA----------SAE---------AVFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS----------CHH---------HHHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC----------CHH---------HHHHHH-HHHHHHCCCc
Confidence 44 22345677999999999999999932210000000 000 001123 5889999999
Q ss_pred ceeEEEccCc---eeEEEEe
Q 018405 339 GVNYEYGACN---LYVMEFL 355 (356)
Q Consensus 339 ~~~~~~~~~~---~~vi~~~ 355 (356)
+++..+.... ..++.++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEE
T ss_pred eEEEEecCCccCCcEEEEEE
Confidence 9987765432 4555443
No 122
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=99.31 E-value=1.1e-12 Score=116.68 Aligned_cols=125 Identities=10% Similarity=0.073 Sum_probs=93.2
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCC-
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEA- 252 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~- 252 (356)
.++..+. +.+..+|||+|||+|..+..+++. .|..+++++|. +.+++.+++. ++++++.+|+.++.++.
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4555555 677889999999999999999997 78899999996 7777665432 47999999998865543
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
|+|++ ++++ ...+|+++.++|+|||++++..+... ..+++.+.
T Consensus 180 fD~Vi~-----~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPD--PWNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSC--GGGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcC--HHHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99998 4444 46899999999999999999763210 13456667
Q ss_pred HHHcCCcceeEEE
Q 018405 332 AIKAGFKGVNYEY 344 (356)
Q Consensus 332 l~~aGf~~~~~~~ 344 (356)
++++||+.++...
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7778887776654
No 123
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=99.31 E-value=4.5e-12 Score=105.76 Aligned_cols=121 Identities=19% Similarity=0.168 Sum_probs=93.5
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC--CC
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP--EA 252 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~--~~ 252 (356)
.+++.+. ..+..+|||+|||+|..+..+++.. .+++++|. +.+++.+++. +++++..+|+.++.+ ..
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 4445455 6678899999999999999999877 78999996 7777766542 578999999876333 23
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHH
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSEL 331 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~l 331 (356)
|+|++..++++ ...+++++.++|+|||++++..... .+..++.++
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~ 146 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMEC 146 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHH
Confidence 99999988765 4789999999999999999865321 124578889
Q ss_pred HHHcCCcce
Q 018405 332 AIKAGFKGV 340 (356)
Q Consensus 332 l~~aGf~~~ 340 (356)
+++.||.+.
T Consensus 147 l~~~g~~~~ 155 (192)
T 1l3i_A 147 LRDLGFDVN 155 (192)
T ss_dssp HHHTTCCCE
T ss_pred HHHCCCceE
Confidence 999999543
No 124
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Probab=99.31 E-value=9.4e-12 Score=110.10 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=79.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCCCcEEEeccccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPEADTILMKWVLS 262 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~~D~i~~~~vlh 262 (356)
++++.+|||||||+|.++..++.+.++.+++++|. +.+++.|+++ ++++++.+|..+ +....|+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~-- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL-- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT--
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC--
Confidence 77899999999999988777777778999999996 8888888653 689999999987 4222399998655
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
. ++..++++++++.|+|||++++.+.
T Consensus 198 -~--~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 198 -A--EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp -C--SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred -c--cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 3478999999999999999999763
No 125
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=99.30 E-value=8.5e-12 Score=107.66 Aligned_cols=128 Identities=18% Similarity=0.130 Sum_probs=95.0
Q ss_pred CCCCceEEEEcCC-ccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC--CCCCC--cEEEecc
Q 018405 191 FEHVKKLVDVGGG-LGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE--SVPEA--DTILMKW 259 (356)
Q Consensus 191 ~~~~~~vLDiG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~--~~~~~--D~i~~~~ 259 (356)
+++..+|||+||| +|.++..+++.. ..+++++|. +.+++.++++ .+++++.+|+.. +.++. |+|++..
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4577899999999 999999999986 778999996 8888777643 269999999643 44433 9999987
Q ss_pred cccCCChH-----------------HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405 260 VLSSFDDE-----------------QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE 322 (356)
Q Consensus 260 vlh~~~~~-----------------~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (356)
..++.++. ....+++++.+.|+|||+++++-+.. .
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------------~ 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK----------------------------E 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC----------------------------H
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc----------------------------H
Confidence 76654332 23789999999999999999953211 0
Q ss_pred CCHHHHHHHHHHcCCcceeEEEccC
Q 018405 323 RTKQEYSELAIKAGFKGVNYEYGAC 347 (356)
Q Consensus 323 ~t~~e~~~ll~~aGf~~~~~~~~~~ 347 (356)
...+++.++++++||++..+....+
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~~g 208 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFKVG 208 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred hHHHHHHHHHHHcCCceEEEEecCC
Confidence 1246888999999998777655543
No 126
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=99.30 E-value=3e-12 Score=107.77 Aligned_cols=103 Identities=15% Similarity=0.134 Sum_probs=80.9
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C-CC-CC-cEEEe
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S-VP-EA-DTILM 257 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~-~~-~~-D~i~~ 257 (356)
+++..+|||+|||+|..+..+++.+ |..+++++|. +.+++.++++ ++++++.+|+.+ + .. +. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4577899999999999999999986 6779999996 8888777543 579999999876 3 33 33 99998
Q ss_pred ccccc-------CCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 258 KWVLS-------SFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 258 ~~vlh-------~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
...+. ....++..++++++.++|+|||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 76551 1122356789999999999999999987543
No 127
>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20
Probab=99.30 E-value=3.6e-12 Score=110.91 Aligned_cols=120 Identities=16% Similarity=0.115 Sum_probs=92.9
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCC----CC-cEEEec
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVP----EA-DTILMK 258 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~----~~-D~i~~~ 258 (356)
.+..+|||||||+|..+..++...|+.+++++|. +.+++.+++. ++++++.+|+.+ +.+ .. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4678999999999999999998889999999996 8777776542 469999999876 432 33 999987
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
.+ .+...+++.++++|+|||++++....... ...+++.+.++++||+
T Consensus 149 ~~------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV------ARLSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC------SCHHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEE
T ss_pred cc------CCHHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCe
Confidence 63 23689999999999999999886321100 0134677889999999
Q ss_pred ceeEEE
Q 018405 339 GVNYEY 344 (356)
Q Consensus 339 ~~~~~~ 344 (356)
+.+...
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887754
No 128
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Probab=99.29 E-value=1.9e-11 Score=105.22 Aligned_cols=141 Identities=16% Similarity=0.084 Sum_probs=96.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHH----hCCCCCCceEEEccCCCC-----CCCC-cEEEec
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIK----NAPSYLGIEHVGGDFFES-----VPEA-DTILMK 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~----~a~~~~~v~~~~~D~~~~-----~~~~-D~i~~~ 258 (356)
+.+..+|||+|||+|.++..+++.+ |+.+++++|. +.+++ .++..++++++.+|+.++ .++. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5577899999999999999999885 6679999996 64443 344447899999999872 2333 999975
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
.. ..+....++++++++|+|||++++. ....... . .. .....+.+++.++ +++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~-~--------~~---------~~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSID-V--------TK---------EPEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTC-T--------TS---------CHHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCC-C--------CC---------ChhhhhHHHHHHH-Hhh-ce
Confidence 44 1223456699999999999999997 2111100 0 00 0001235677777 777 99
Q ss_pred ceeEEEccCc---eeEEEEeC
Q 018405 339 GVNYEYGACN---LYVMEFLK 356 (356)
Q Consensus 339 ~~~~~~~~~~---~~vi~~~~ 356 (356)
+++....... ..++.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred eeeEeccCcccCCCEEEEEEe
Confidence 9988776443 55666554
No 129
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=99.28 E-value=4.1e-12 Score=104.97 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=84.8
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CC---CCC--cEEEecccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SV---PEA--DTILMKWVL 261 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~---~~~--D~i~~~~vl 261 (356)
.++..+|||||||. +.+|. +.+++.++++ .+++++.+|+.+ +. ++. |+|++..++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56789999999996 23785 7788777654 369999999987 54 443 999999999
Q ss_pred cCC-ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCC
Q 018405 262 SSF-DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGF 337 (356)
Q Consensus 262 h~~-~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf 337 (356)
||+ ++ ..++|++++++|||||++++.++...... .....++.++|.++++++||
T Consensus 74 ~~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLH--SAEILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCC--CHHHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccC--HHHHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence 998 55 58999999999999999999665432210 01223678999999999999
No 130
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41
Probab=99.27 E-value=5.9e-12 Score=110.86 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=78.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChHH
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDEQ 268 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~~ 268 (356)
+..+|||||||+|.++..+++. +.+++++|. +.+++.+++...-.++.+|+.+ +++.. |+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 6789999999999999999986 568999996 8888777654222388999887 66543 999999877766433
Q ss_pred HHHHHHHHHHhCCCCCEEEEEecc
Q 018405 269 SLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 269 ~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
...+|++++++|+|||++++..+.
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 789999999999999999997654
No 131
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=99.27 E-value=1e-11 Score=111.90 Aligned_cols=129 Identities=17% Similarity=0.188 Sum_probs=93.9
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC-CC--C-CC-cEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE-SV--P-EA-DTI 255 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~-~~--~-~~-D~i 255 (356)
.++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|..+ .. + +. |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4668999999999999999998877889999996 777776643 2679999999876 22 2 33 999
Q ss_pred EecccccCCChHHH--HHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHH
Q 018405 256 LMKWVLSSFDDEQS--LKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAI 333 (356)
Q Consensus 256 ~~~~vlh~~~~~~~--~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~ 333 (356)
++....++.+.... ..++++++++|+|||++++..... .. ......++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~-----------~~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WL-----------DLELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TT-----------CHHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------cc-----------chHHHHHHHHHHH
Confidence 99777766544333 689999999999999999863210 00 0123578899999
Q ss_pred HcCCcceeEEEc
Q 018405 334 KAGFKGVNYEYG 345 (356)
Q Consensus 334 ~aGf~~~~~~~~ 345 (356)
++||..++....
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
No 132
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*
Probab=99.27 E-value=5e-11 Score=102.48 Aligned_cols=150 Identities=15% Similarity=0.087 Sum_probs=97.4
Q ss_pred HHHHHHhcC--CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHH----HHhCCCCCCceEEEccCCCCC----
Q 018405 182 EKVLESYKG--FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYV----IKNAPSYLGIEHVGGDFFESV---- 249 (356)
Q Consensus 182 ~~~~~~~~~--~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~----~~~a~~~~~v~~~~~D~~~~~---- 249 (356)
..++..++. +++..+|||+|||+|..+..+++.. |+-+++++|. +.+ ++.++++.++.++.+|...+.
T Consensus 63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~ 142 (232)
T 3id6_C 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKS 142 (232)
T ss_dssp HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTT
T ss_pred HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhc
Confidence 344444432 6678999999999999999999864 6779999996 654 344555578999999987631
Q ss_pred -CCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHH
Q 018405 250 -PEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQE 327 (356)
Q Consensus 250 -~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e 327 (356)
.+. |+|++.... + ++...+++.+++.|+|||++++...... .+.. ..-. ...++
T Consensus 143 ~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~--------------~d~t-----~~~~-e~~~~ 198 (232)
T 3id6_C 143 VVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARS--------------IDVT-----KDPK-EIYKT 198 (232)
T ss_dssp TCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSS-SSTTH
T ss_pred cccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCC--------------cccC-----CCHH-HHHHH
Confidence 223 999886443 2 2344455667779999999999732211 1100 0000 11234
Q ss_pred HHHHHHHcCCcceeEEEccC---ceeEEEEe
Q 018405 328 YSELAIKAGFKGVNYEYGAC---NLYVMEFL 355 (356)
Q Consensus 328 ~~~ll~~aGf~~~~~~~~~~---~~~vi~~~ 355 (356)
..+.|+++||++++.....+ .+.++.++
T Consensus 199 ~~~~L~~~gf~~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 199 EVEKLENSNFETIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp HHHHHHHTTEEEEEEEECTTTCSSCEEEEEE
T ss_pred HHHHHHHCCCEEEEEeccCCCcCceEEEEEE
Confidence 55677889999999887643 35555554
No 133
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}
Probab=99.27 E-value=7.2e-12 Score=115.99 Aligned_cols=107 Identities=17% Similarity=0.215 Sum_probs=85.4
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---------CCceEEEccCCCCCCCC
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---------LGIEHVGGDFFESVPEA 252 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~D~~~~~~~~ 252 (356)
.+++.++ ..+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ .++++..+|+.++.+..
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4556565 44558999999999999999999999999999996 8888777653 14788999999866643
Q ss_pred --cEEEecccccC---CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 253 --DTILMKWVLSS---FDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 253 --D~i~~~~vlh~---~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
|+|++...+|+ .++....++++++.+.|+|||+++++.
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 99999999885 334445689999999999999999965
No 134
>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54
Probab=99.26 E-value=5.3e-13 Score=117.19 Aligned_cols=145 Identities=13% Similarity=0.028 Sum_probs=94.9
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC----CCC----CC-cEE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE----SVP----EA-DTI 255 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~----~~~----~~-D~i 255 (356)
+..+|||+|||+|.++..++.+.|+.+++++|. +.+++.|+++ ++++++.+|+.+ +.+ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999888899999996 8888777542 359999999543 343 23 999
Q ss_pred EecccccCCCh-------------HHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405 256 LMKWVLSSFDD-------------EQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE 322 (356)
Q Consensus 256 ~~~~vlh~~~~-------------~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (356)
++.-..|+... +....++++++++|+|||.+.+++.+.... ........ +.. ...+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~------~~~l~~~g--~~~-~~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS------LQLKKRLR--WYS-CMLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH------HHHGGGBS--CEE-EEESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH------HhcccceE--EEE-ECCCCh
Confidence 99866664431 112356788999999999998876543210 00000000 000 012334
Q ss_pred CCHHHHHHHHHHcCCcceeEEEcc
Q 018405 323 RTKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 323 ~t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
.+.+++.++++++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 456889999999999998877654
No 135
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31
Probab=99.26 E-value=2.7e-11 Score=113.26 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=87.8
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC-------CC--------CCCceEEEc
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA-------PS--------YLGIEHVGG 243 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-------~~--------~~~v~~~~~ 243 (356)
.+..+++.+. +.+..+|||||||+|.++..+++.++..+++++|+ +.+++.| +. ..+++++.+
T Consensus 230 ~v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g 308 (433)
T 1u2z_A 230 FLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 308 (433)
T ss_dssp HHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence 3456666666 77889999999999999999999888788999996 6665555 32 257899887
Q ss_pred cCCC-C--C----CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCC
Q 018405 244 DFFE-S--V----PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEV 296 (356)
Q Consensus 244 D~~~-~--~----~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~ 296 (356)
|.+. + + ...|+|++.++++ . ++....|+++.+.|+|||++++.+.+.+..
T Consensus 309 D~~~~~~~~~~~~~~FDvIvvn~~l~-~--~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 309 KSFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred CccccccccccccCCCCEEEEeCccc-c--ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 6443 2 1 2249999987774 2 457788999999999999999998877654
No 136
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=99.26 E-value=2.1e-11 Score=107.25 Aligned_cols=135 Identities=15% Similarity=0.122 Sum_probs=98.9
Q ss_pred CC-CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-C--CCC-C-cEEE
Q 018405 191 FE-HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-S--VPE-A-DTIL 256 (356)
Q Consensus 191 ~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~--~~~-~-D~i~ 256 (356)
.+ +..+|||+|||+|..+..++++.+. +++++|+ +.+++.++++ ++++++.+|+.+ . ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 66 7889999999999999999998776 9999996 8887777543 479999999987 3 333 3 9999
Q ss_pred ecccccCC------------------ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcC
Q 018405 257 MKWVLSSF------------------DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVP 318 (356)
Q Consensus 257 ~~~vlh~~------------------~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (356)
++-..+.. .......+++.+.++|+|||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 96444322 113456899999999999999999421 1
Q ss_pred CCccCCHHHHHHHHHHcCCcceeEEEcc------CceeEEEEeC
Q 018405 319 HGRERTKQEYSELAIKAGFKGVNYEYGA------CNLYVMEFLK 356 (356)
Q Consensus 319 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~------~~~~vi~~~~ 356 (356)
....++.+.+++.||...++.+.. ....+++++|
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k 218 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIK 218 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEe
Confidence 124577888899999988776642 2345666543
No 137
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=99.26 E-value=1.1e-11 Score=108.80 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=97.5
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 250 (356)
...++..++ +.+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+ +++
T Consensus 85 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 85 ASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE 163 (258)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence 345666666 778899999999999999999998 67889999996 7777766532 579999999988 466
Q ss_pred CC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405 251 EA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY 328 (356)
Q Consensus 251 ~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 328 (356)
+. |+|++ ++++ ...+|+++.++|+|||++++..+..+ ...++
T Consensus 164 ~~~~D~v~~-----~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~ 207 (258)
T 2pwy_A 164 EAAYDGVAL-----DLME--PWKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLEL 207 (258)
T ss_dssp TTCEEEEEE-----ESSC--GGGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHH
T ss_pred CCCcCEEEE-----CCcC--HHHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHH
Confidence 43 99997 3443 45899999999999999999764210 12456
Q ss_pred HHHHHHcCCcceeEEE
Q 018405 329 SELAIKAGFKGVNYEY 344 (356)
Q Consensus 329 ~~ll~~aGf~~~~~~~ 344 (356)
.+.++++||..+++..
T Consensus 208 ~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 208 VRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHTTTTEEEEEEEE
T ss_pred HHHHHHCCCceEEEEE
Confidence 6677788888776554
No 138
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}
Probab=99.25 E-value=4.2e-12 Score=116.45 Aligned_cols=110 Identities=19% Similarity=0.252 Sum_probs=88.4
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCCCC-cE
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVPEA-DT 254 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~~~-D~ 254 (356)
..+++.++ .....+|||+|||+|.++..+++..|+.+++++|. +.+++.++++ ..++++.+|+.+..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 45566664 34567999999999999999999999999999996 7777777543 24678899988743444 99
Q ss_pred EEecccccC---CChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 255 ILMKWVLSS---FDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 255 i~~~~vlh~---~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
|++..++|+ .+.+...++|++++++|+|||+++++...
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 999999986 23456789999999999999999997653
No 139
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}
Probab=99.25 E-value=4.1e-11 Score=101.04 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=80.1
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC--CCeEEEccchHHHHhCCCCCCceEEEccCCC-C---------
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP--RIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-S--------- 248 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p--~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------- 248 (356)
+..+.+.+..+.+..+|||||||+|.++..+++++| +.+++++|...+ ...++++++.+|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence 344556665356778999999999999999999998 689999997442 123679999999987 4
Q ss_pred ----------------CCC-C-cEEEecccccCCC----hHH-----HHHHHHHHHHhCCCCCEEEEEe
Q 018405 249 ----------------VPE-A-DTILMKWVLSSFD----DEQ-----SLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 249 ----------------~~~-~-D~i~~~~vlh~~~----~~~-----~~~~L~~~~~~L~pgG~lii~e 290 (356)
++. . |+|++...+|+.. +.. ..++|++++++|+|||++++..
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 343 3 9999988877632 111 1358999999999999998843
No 140
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53
Probab=99.25 E-value=1.4e-11 Score=105.14 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=76.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC--cEEEeccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA--DTILMKWV 260 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~--D~i~~~~v 260 (356)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999996 7887776542 579999999876 3 4443 98877544
Q ss_pred ccCCChHH------HHHHHHHHHHhCCCCCEEEEEe
Q 018405 261 LSSFDDEQ------SLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 261 lh~~~~~~------~~~~L~~~~~~L~pgG~lii~e 290 (356)
..+..... ...+|+++++.|+|||.+++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 32211100 2689999999999999999854
No 141
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Probab=99.24 E-value=6.3e-12 Score=107.66 Aligned_cols=98 Identities=12% Similarity=0.172 Sum_probs=76.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC----CCCC--cEEEecc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES----VPEA--DTILMKW 259 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~----~~~~--D~i~~~~ 259 (356)
+..+|||||||+|.++..+++.+|+..++++|. +.+++.++++ .+++++.+|+.+. ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 567999999999999999999999999999996 7777766432 5799999997662 4544 9998875
Q ss_pred cccCCChHHH------HHHHHHHHHhCCCCCEEEEEe
Q 018405 260 VLSSFDDEQS------LKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 260 vlh~~~~~~~------~~~L~~~~~~L~pgG~lii~e 290 (356)
.......... ..++++++++|+|||++++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 4432222111 259999999999999999865
No 142
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=99.24 E-value=2.5e-11 Score=100.41 Aligned_cols=121 Identities=11% Similarity=0.057 Sum_probs=93.3
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC--C
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE--A 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~--~ 252 (356)
..+++.+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.++++ ++++++.+|+.++.++ .
T Consensus 25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (183)
T 2yxd_A 25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEF 101 (183)
T ss_dssp HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCC
Confidence 34555555 66778999999999999999998 8889999996 7777777643 5799999998874443 3
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELA 332 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll 332 (356)
|+|++..+ + +...+++++++. |||++++..... .+..++.+.+
T Consensus 102 D~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~-----------------------------~~~~~~~~~l 144 (183)
T 2yxd_A 102 NKAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVL-----------------------------ENAAKIINEF 144 (183)
T ss_dssp SEEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCH-----------------------------HHHHHHHHHH
T ss_pred cEEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEeccc-----------------------------ccHHHHHHHH
Confidence 99999888 2 257889999988 999999966321 0135678889
Q ss_pred HHcCCcceeE
Q 018405 333 IKAGFKGVNY 342 (356)
Q Consensus 333 ~~aGf~~~~~ 342 (356)
+++||.+..+
T Consensus 145 ~~~g~~~~~~ 154 (183)
T 2yxd_A 145 ESRGYNVDAV 154 (183)
T ss_dssp HHTTCEEEEE
T ss_pred HHcCCeEEEE
Confidence 9999876654
No 143
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A
Probab=99.23 E-value=8.9e-12 Score=114.47 Aligned_cols=106 Identities=21% Similarity=0.165 Sum_probs=85.2
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCC-
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEA- 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~- 252 (356)
..+++.+. ..+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.++.
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 34555554 557789999999999999988875 55689999974465555432 579999999988 55555
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
|+|++..+++|+..+.....+.++++.|+|||++++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 9999999999988777888999999999999999854
No 144
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Probab=99.23 E-value=9e-12 Score=108.93 Aligned_cols=121 Identities=14% Similarity=0.004 Sum_probs=93.5
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCC----CC-cEEEec
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVP----EA-DTILMK 258 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~----~~-D~i~~~ 258 (356)
.+..+|||||||+|..+..++..+|+.+++++|. +.+++.++++ .+++++.+|+.+ +.. .. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999996 8877777543 469999999877 431 23 999987
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCc
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 338 (356)
.+- +...+++.+.+.|+|||++++....... ....++...+++.||+
T Consensus 159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR 205 (249)
T ss_dssp SSC------CHHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred CcC------CHHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence 542 2578999999999999999985532110 0123566778889999
Q ss_pred ceeEEEc
Q 018405 339 GVNYEYG 345 (356)
Q Consensus 339 ~~~~~~~ 345 (356)
+.++.+.
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9887765
No 145
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}
Probab=99.22 E-value=7.8e-11 Score=104.36 Aligned_cols=150 Identities=13% Similarity=0.179 Sum_probs=95.9
Q ss_pred HHHHHHHhcCCC-CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhC-CCCCCceEEE-ccCCC----CCCC-
Q 018405 181 MEKVLESYKGFE-HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNA-PSYLGIEHVG-GDFFE----SVPE- 251 (356)
Q Consensus 181 ~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a-~~~~~v~~~~-~D~~~----~~~~- 251 (356)
+..+++.+. +. +..+|||||||||.++..+++. +..+++++|. +.+++.+ +..+++.... .|+.. ..|.
T Consensus 73 l~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~ 150 (291)
T 3hp7_A 73 LEKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG 150 (291)
T ss_dssp HHHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred HHHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence 345566665 44 4579999999999999988886 4458999996 7666653 3334554332 23322 1333
Q ss_pred -CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEE-ecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHH
Q 018405 252 -ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNV-NVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYS 329 (356)
Q Consensus 252 -~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~ 329 (356)
.|+|++..++|++ ..+|++++++|+|||+++++ .+-.+... ..........+.. ...++.+++.
T Consensus 151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~--~~~~~~G~vrd~~-------~~~~~~~~v~ 216 (291)
T 3hp7_A 151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGR--EQIGKNGIVRESS-------IHEKVLETVT 216 (291)
T ss_dssp CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCG--GGCC-CCCCCCHH-------HHHHHHHHHH
T ss_pred CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccCh--hhcCCCCccCCHH-------HHHHHHHHHH
Confidence 4999998888754 78999999999999999886 11111100 0000000000100 1123678999
Q ss_pred HHHHHcCCcceeEEEcc
Q 018405 330 ELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 330 ~ll~~aGf~~~~~~~~~ 346 (356)
++++++||++..+...+
T Consensus 217 ~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 217 AFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHTTEEEEEEEECS
T ss_pred HHHHHCCCEEEEEEECC
Confidence 99999999999887764
No 146
>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A
Probab=99.22 E-value=3.5e-11 Score=105.24 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=83.7
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHh--CCCCeEEEccc-hHHHHhCCCC---C-------C------------
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISK--YPRIKGINYDL-PYVIKNAPSY---L-------G------------ 237 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~p~~~~~~~D~-~~~~~~a~~~---~-------~------------ 237 (356)
.+++.+. ..+..+|||+|||+|.++..+++. .+..+++++|+ +.+++.|+.+ . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444333 235689999999999999999998 77889999996 8888777632 2 2
Q ss_pred -------------ce-------------EEEccCCCCC------CC-C-cEEEecccccCCCh-------HHHHHHHHHH
Q 018405 238 -------------IE-------------HVGGDFFESV------PE-A-DTILMKWVLSSFDD-------EQSLKLLKNC 276 (356)
Q Consensus 238 -------------v~-------------~~~~D~~~~~------~~-~-D~i~~~~vlh~~~~-------~~~~~~L~~~ 276 (356)
++ ++.+|++++. +. . |+|++...+++..+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 66 9999998843 33 3 99999877665432 5677999999
Q ss_pred HHhCCCCCEEEEEecc
Q 018405 277 YKALPDGGKLLNVNVT 292 (356)
Q Consensus 277 ~~~L~pgG~lii~e~~ 292 (356)
+++|+|||+++++...
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999996543
No 147
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Probab=99.21 E-value=4.5e-11 Score=98.23 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=83.8
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccchHHHHhCCCCCCceEEEccCCC-C--------CCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-S--------VPE 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~--------~~~ 251 (356)
..+++.+....+..+|||+|||+|.++..+++.+ |+.+++++|...+++ .++++++.+|+.+ + .+.
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCC
Confidence 3455555545677899999999999999999985 778999999744322 2689999999988 4 554
Q ss_pred C--cEEEecccccCCChHH---------HHHHHHHHHHhCCCCCEEEEEecc
Q 018405 252 A--DTILMKWVLSSFDDEQ---------SLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 252 ~--D~i~~~~vlh~~~~~~---------~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
. |+|++..++|+..+.. ...+++++.+.|+|||++++....
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 3 9999999888765431 168999999999999999986653
No 148
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=99.21 E-value=2.2e-11 Score=103.48 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=80.8
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC-CC-C
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV-PE-A 252 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-~~-~ 252 (356)
..+++.+. ..+..+|||||||+|.++..+++. ..+++++|. +.+++.++++ ++++++.+|..+.. +. .
T Consensus 67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 44555565 678899999999999999999998 578999996 8777776542 57999999998733 22 3
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
|+|++..++|++++ .+.+.|+|||++++.-..
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred ccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999975 478999999999996554
No 149
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=99.21 E-value=7e-11 Score=100.76 Aligned_cols=117 Identities=12% Similarity=0.047 Sum_probs=94.5
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC---CCcEEEeccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP---EADTILMKWV 260 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~---~~D~i~~~~v 260 (356)
++..+|+|||||+|.++..+++..|..+++++|. +..++.|+++ ++|++..+|.+++.+ ..|+|++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3668999999999999999999999989999996 8887777653 479999999988554 2499988766
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcce
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV 340 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 340 (356)
.- +-...+|..+.+.|+|+|++++.-. -..+..+++|.+.||.++
T Consensus 94 Gg----~~i~~Il~~~~~~L~~~~~lVlq~~-------------------------------~~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 GG----RLIARILEEGLGKLANVERLILQPN-------------------------------NREDDLRIWLQDHGFQIV 138 (225)
T ss_dssp CH----HHHHHHHHHTGGGCTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred Ch----HHHHHHHHHHHHHhCCCCEEEEECC-------------------------------CCHHHHHHHHHHCCCEEE
Confidence 33 4478999999999999999888211 125678899999999988
Q ss_pred eEE
Q 018405 341 NYE 343 (356)
Q Consensus 341 ~~~ 343 (356)
+-.
T Consensus 139 ~e~ 141 (225)
T 3kr9_A 139 AES 141 (225)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 150
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}
Probab=99.20 E-value=1.9e-11 Score=105.64 Aligned_cols=143 Identities=15% Similarity=0.154 Sum_probs=88.1
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CC--------ceEEE-ccCCCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LG--------IEHVG-GDFFESV 249 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~--------v~~~~-~D~~~~~ 249 (356)
+...++.+....+..+|||||||+|.++..+++. ...+++++|. +.+++.+.+. ++ +.+.. .|+..+.
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGR 103 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCC
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCC
Confidence 3455555652234569999999999999999987 3348999996 6666654332 23 22222 2222211
Q ss_pred CCCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCC-------cc
Q 018405 250 PEADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHG-------RE 322 (356)
Q Consensus 250 ~~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 322 (356)
.|.+.+..++.++ ..+|++++++|+|||++++.. .+. +..... .. ...| ..
T Consensus 104 --~d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~---------~e~~~~--~~--~~~G~~~d~~~~~ 161 (232)
T 3opn_A 104 --PSFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ---------FEAGRE--QV--GKNGIIRDPKVHQ 161 (232)
T ss_dssp --CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH---------HHSCHH--HH--C-CCCCCCHHHHH
T ss_pred --CCEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc---------cccCHH--Hh--CcCCeecCcchhH
Confidence 1444444444443 679999999999999999852 110 000000 00 0011 12
Q ss_pred CCHHHHHHHHHHcCCcceeEEEcc
Q 018405 323 RTKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 323 ~t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
.+.+++.++++++||++..+...+
T Consensus 162 ~~~~~l~~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 162 MTIEKVLKTATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEECS
T ss_pred HHHHHHHHHHHHCCCEEEEEEEcc
Confidence 367899999999999999887653
No 151
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Probab=99.20 E-value=4.9e-11 Score=109.08 Aligned_cols=101 Identities=22% Similarity=0.232 Sum_probs=78.1
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCC-C-
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPE-A- 252 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~- 252 (356)
.+.+.+. ..+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.+. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444343 567789999999999999998886 45689999974477666542 689999999988 6663 3
Q ss_pred cEEEeccc---ccCCChHHHHHHHHHHHHhCCCCCEEE
Q 018405 253 DTILMKWV---LSSFDDEQSLKLLKNCYKALPDGGKLL 287 (356)
Q Consensus 253 D~i~~~~v---lh~~~~~~~~~~L~~~~~~L~pgG~li 287 (356)
|+|++..+ +++. .....+|++++++|+|||+++
T Consensus 133 D~Ivs~~~~~~l~~~--~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLFE--SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTTT--CHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccCH--HHHHHHHHHHHhhcCCCcEEE
Confidence 99998764 4443 347789999999999999987
No 152
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}
Probab=99.20 E-value=1.4e-11 Score=117.54 Aligned_cols=106 Identities=21% Similarity=0.156 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEA 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~ 252 (356)
...+++.+. ..+..+|||||||+|.++..+++ .+..+++++|...+++.|++. ++++++.+|+.+ +.++.
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 445566555 45678999999999999998877 577899999975476665432 679999999998 66655
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
|+|++..++|++.+++....+.+++++|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998888988877788899999999999999985
No 153
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=99.19 E-value=2.7e-11 Score=107.63 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=83.1
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE 251 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~ 251 (356)
...++..++ +.+..+|||+|||+|.++..+++. .|..+++++|. +.+++.++++ ++++++.+|+.+..++
T Consensus 101 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 179 (277)
T 1o54_A 101 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 179 (277)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence 345666665 778889999999999999999998 67899999996 8777776543 4789999998875554
Q ss_pred -C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 252 -A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 252 -~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
. |+|++ +.++ ...+|+++.++|+|||++++.++
T Consensus 180 ~~~D~V~~-----~~~~--~~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 180 KDVDALFL-----DVPD--PWNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp CSEEEEEE-----CCSC--GGGTHHHHHHHEEEEEEEEEEES
T ss_pred CccCEEEE-----CCcC--HHHHHHHHHHHcCCCCEEEEEeC
Confidence 3 99987 3433 46899999999999999999764
No 154
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=99.19 E-value=3.1e-11 Score=102.92 Aligned_cols=101 Identities=18% Similarity=0.140 Sum_probs=82.0
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC--C
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP--E 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~--~ 251 (356)
..+++.+. ..+..+|||||||+|.++..+++.. |+.+++++|. +.+++.++++ ++++++.+|+..+.+ .
T Consensus 67 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 145 (215)
T 2yxe_A 67 GMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA 145 (215)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred HHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence 45555555 6678899999999999999999987 6689999996 7777777543 569999999866444 2
Q ss_pred C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
. |+|++..++|++++ ++.+.|+|||++++...
T Consensus 146 ~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 146 PYDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp CEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred CeeEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence 3 99999999999863 78899999999999754
No 155
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=99.19 E-value=2.6e-11 Score=104.05 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=78.5
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC--------CCCc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV--------PEAD 253 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~--------~~~D 253 (356)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|..+.. ...|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 34678999999999999999999998 789999996 8777766532 46999999986521 1239
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
+|++.... +....+++++.++|+|||.+++.+...+
T Consensus 136 ~v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 136 FIFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp EEEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred EEEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 99886542 3467999999999999998888666543
No 156
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Probab=99.19 E-value=1.6e-11 Score=105.51 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=100.9
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~ 263 (356)
..+.+|||||||+|.++..+....|..+++++|. +.+++.++.+ .+.++...|+.. +.+.. |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 3578999999999999999999999999999996 8888777653 457888999998 43433 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNYE 343 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 343 (356)
+.++.....+ ++.++|+|+|.++..+.-.=..+. ..++ ..-.+.|.+.+.+.|..+.++.
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--------~gm~-----------~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--------KGMF-----------QNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------CHH-----------HHHHHHHHHHHHHHTCCEEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--------cchh-----------hHHHHHHHHHHHhcCCceeeee
Confidence 9877666777 899999999998887752111110 0111 1125789999999998655544
Q ss_pred Ec
Q 018405 344 YG 345 (356)
Q Consensus 344 ~~ 345 (356)
.-
T Consensus 271 ~~ 272 (281)
T 3lcv_B 271 IG 272 (281)
T ss_dssp ET
T ss_pred ec
Confidence 43
No 157
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.18 E-value=9.5e-11 Score=97.92 Aligned_cols=100 Identities=12% Similarity=-0.044 Sum_probs=80.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--C-CC-CcEEEecc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--V-PE-ADTILMKW 259 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~-~~-~D~i~~~~ 259 (356)
.+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ ++++++.+|+.+ . . ++ .|+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999987774 5568999996 8888877653 579999999876 2 2 22 39999988
Q ss_pred cccCCChHHHHHHHHHHHH--hCCCCCEEEEEeccc
Q 018405 260 VLSSFDDEQSLKLLKNCYK--ALPDGGKLLNVNVTI 293 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~--~L~pgG~lii~e~~~ 293 (356)
.+|+. .++..++++.+.+ +|+|||++++.....
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 86653 3568899999999 999999999976544
No 158
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=99.18 E-value=4.6e-11 Score=104.40 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=78.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC---CCC---CCcEE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE---SVP---EADTI 255 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~---~~D~i 255 (356)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|+.+ ..+ ..|+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34678999999999999999999998 889999996 8777776543 479999999865 222 23999
Q ss_pred EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
++... .+....+|+++.++|+|||++++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 98542 3456789999999999999998866654
No 159
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=99.18 E-value=2e-11 Score=105.77 Aligned_cols=103 Identities=18% Similarity=0.194 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCCC
Q 018405 179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVPE 251 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~~ 251 (356)
.....+++.+. ..+..+|||||||+|.++..+++..+ .+++++|. +.+++.++++ ++++++.+|+..+++.
T Consensus 78 ~~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 155 (235)
T 1jg1_A 78 HMVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP 155 (235)
T ss_dssp HHHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred HHHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC
Confidence 34556666665 77888999999999999999999887 78999995 7777776542 4689999998545442
Q ss_pred ---CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 252 ---ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 252 ---~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
.|+|++..+++++++ ++.+.|+|||++++...
T Consensus 156 ~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp GCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CCCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 299999999999864 57889999999999654
No 160
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}
Probab=99.18 E-value=5e-11 Score=103.21 Aligned_cols=99 Identities=15% Similarity=0.263 Sum_probs=73.8
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC------------CCCCceEEEccCCC--C--CCCC--
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP------------SYLGIEHVGGDFFE--S--VPEA-- 252 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~D~~~--~--~~~~-- 252 (356)
.+..+|||||||+|.++..+++.+|+..++++|. +.+++.|+ ...+++++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 4567999999999999999999999999999996 77766442 23679999999886 3 4444
Q ss_pred cEEEecccccCCCh--HH----HHHHHHHHHHhCCCCCEEEEEe
Q 018405 253 DTILMKWVLSSFDD--EQ----SLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 253 D~i~~~~vlh~~~~--~~----~~~~L~~~~~~L~pgG~lii~e 290 (356)
|.|++...-.+... .. ...+|+++.++|+|||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 98876543221110 00 1479999999999999999864
No 161
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=99.18 E-value=3.7e-11 Score=103.06 Aligned_cols=99 Identities=14% Similarity=0.208 Sum_probs=78.8
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC---CCC-----C-Cc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE---SVP-----E-AD 253 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~---~~~-----~-~D 253 (356)
.+..+|||||||+|..+..+++.++ +.+++++|. +.+++.++++ ++++++.+|..+ ..+ . .|
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3578999999999999999999875 789999996 8888877653 469999999744 222 2 39
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
+|++....+++ .....+++.+ ++|+|||.+++.+...
T Consensus 137 ~V~~d~~~~~~--~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 137 MVFLDHWKDRY--LPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEEECSCGGGH--HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEEcCCcccc--hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 99998888776 3356788888 9999999998855543
No 162
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=99.17 E-value=1.3e-10 Score=99.28 Aligned_cols=129 Identities=12% Similarity=-0.004 Sum_probs=99.7
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC-CC--CCcEEEeccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES-VP--EADTILMKWV 260 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-~~--~~D~i~~~~v 260 (356)
++..+|+|||||+|.++..+++..|..+++++|. +..++.|+++ ++|++..+|.++. .+ ..|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4668999999999999999999988889999996 8888777643 5799999999984 33 2499998777
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcce
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV 340 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 340 (356)
.- +-...+|....+.|+++|++++.-. ...+.+++++.+.||.++
T Consensus 100 Gg----~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 GG----RLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKWLAANDFEIV 144 (230)
T ss_dssp CH----HHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred ch----HHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHHHHHCCCEEE
Confidence 54 4478999999999999999888321 126788999999999998
Q ss_pred eEEEc--cC-ceeEEEEe
Q 018405 341 NYEYG--AC-NLYVMEFL 355 (356)
Q Consensus 341 ~~~~~--~~-~~~vi~~~ 355 (356)
+-.-. .+ .+.+|.+.
T Consensus 145 ~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 145 AEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEC--CEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 75432 23 34455543
No 163
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20
Probab=99.17 E-value=2.4e-11 Score=102.97 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=75.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CC-cEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EA-DTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~-D~i~~~~vlh~ 263 (356)
+..+|||||||+|..+..++..+|+.+++++|. +.+++.++.. ++++++.+|+.+..+ .. |+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 367999999999999999999999999999996 7777766542 458999999988433 33 99997542 2
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
+...+++++++.|+|||++++.
T Consensus 143 ----~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----SHHHHHHHHTTSEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEE
Confidence 2579999999999999999995
No 164
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*
Probab=99.17 E-value=8.6e-11 Score=104.46 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=92.6
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVL 261 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vl 261 (356)
++..+|||+|||+|.++..+++..+. +++++|. +.+++.++++ ++++++.+|+.+ ..+.. |+|++...
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p- 201 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV- 201 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC-
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc-
Confidence 46789999999999999999998776 8999996 8887776542 458999999998 33333 99988533
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCccee
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVN 341 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 341 (356)
.....+++++.++|+|||++++.+...... ......+++.+.++++||+...
T Consensus 202 -----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 -----VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp -----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEEE
T ss_pred -----hhHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeEE
Confidence 124688999999999999999987653210 0013467889999999998766
No 165
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=99.16 E-value=1.9e-11 Score=105.81 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=79.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCC----CC-cEEEe
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVP----EA-DTILM 257 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~----~~-D~i~~ 257 (356)
..+..+|||||||+|..+..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+..+ .. |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 34678999999999999999999889999999996 8887777542 489999999987332 33 99997
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
.... +....+++++.++|+|||++++-+...
T Consensus 149 ~~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 149 DAAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp ETTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred cCcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 6432 336789999999999999998866554
No 166
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Probab=99.14 E-value=4.1e-11 Score=110.06 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=76.4
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCC--cEEEecccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEA--DTILMKWVL 261 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~--D~i~~~~vl 261 (356)
.+..+|||||||+|.++..++++ +..+++++|..++++.|++. ++++++.+|+.+ +.|.. |+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 46789999999999999999987 66689999975576666542 459999999998 66643 999997765
Q ss_pred cCCC-hHHHHHHHHHHHHhCCCCCEEEE
Q 018405 262 SSFD-DEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 262 h~~~-~~~~~~~L~~~~~~L~pgG~lii 288 (356)
+++. .+....+++.+.++|+|||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 5442 23478899999999999999874
No 167
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*
Probab=99.14 E-value=3.1e-11 Score=110.55 Aligned_cols=104 Identities=13% Similarity=0.208 Sum_probs=79.7
Q ss_pred HHHHHHHhcCCCCCceEEEEcCC------ccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCC-
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGG------LGATLNMIISK-YPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVP- 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G------~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~- 250 (356)
+..++..+. .++.+||||||| +|..+..++++ +|+.+++++|+ +.+. ...++++++++|+.+ ++.
T Consensus 206 Ye~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~ 280 (419)
T 3sso_A 206 YDRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLD 280 (419)
T ss_dssp HHHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHH
T ss_pred HHHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhh
Confidence 344454443 356899999999 67667777765 69999999997 6553 234789999999988 544
Q ss_pred ------CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 251 ------EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 251 ------~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
.. |+|++. ..|++ ++..+.|++++++|||||++++.|..
T Consensus 281 ~l~~~d~sFDlVisd-gsH~~--~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 281 RIARRYGPFDIVIDD-GSHIN--AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHHCCEEEEEEC-SCCCH--HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hhhcccCCccEEEEC-Ccccc--hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 33 999986 45666 45789999999999999999998865
No 168
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=99.14 E-value=1.9e-10 Score=99.11 Aligned_cols=117 Identities=12% Similarity=0.060 Sum_probs=94.2
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC-CC--CcEEEeccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV-PE--ADTILMKWV 260 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-~~--~D~i~~~~v 260 (356)
++..+|||||||+|.++..+++..|..+++++|. +..++.|+++ ++|++..+|.++.. +. .|+|++.++
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 3668999999999999999999988889999996 8888777653 57999999999843 32 499988766
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcce
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV 340 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 340 (356)
.- +-...+|....+.|++++++++.-. -..+.++++|.+.||.++
T Consensus 100 Gg----~lI~~IL~~~~~~L~~~~~lIlq~~-------------------------------~~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 GG----TLIRTILEEGAAKLAGVTKLILQPN-------------------------------IAAWQLREWSEQNNWLIT 144 (244)
T ss_dssp CH----HHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHHTEEEE
T ss_pred ch----HHHHHHHHHHHHHhCCCCEEEEEcC-------------------------------CChHHHHHHHHHCCCEEE
Confidence 54 4578999999999999999888321 025688899999999986
Q ss_pred eEE
Q 018405 341 NYE 343 (356)
Q Consensus 341 ~~~ 343 (356)
+-.
T Consensus 145 ~E~ 147 (244)
T 3gnl_A 145 SEA 147 (244)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 169
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=99.14 E-value=8.5e-11 Score=101.39 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=81.8
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCCCCC--CC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFESVP--EA 252 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~~~~--~~ 252 (356)
....+++.+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+..+ ..
T Consensus 58 ~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~ 134 (231)
T 1vbf_A 58 LGIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP 134 (231)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred HHHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCC
Confidence 3455666665 6778899999999999999999986 68999996 7777776543 279999999887333 23
Q ss_pred -cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
|+|++..++|++++ ++.+.|+|||++++....
T Consensus 135 fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 135 YDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred ccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 99999999999864 588899999999998653
No 170
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*
Probab=99.13 E-value=1.2e-10 Score=100.97 Aligned_cols=94 Identities=16% Similarity=0.144 Sum_probs=75.9
Q ss_pred CCceEEEEcCCccHHHHHHHHh----CCCCeEEEccc-hHHHHhCCC-CCCceEEEccCCCC----C-CC--CcEEEecc
Q 018405 193 HVKKLVDVGGGLGATLNMIISK----YPRIKGINYDL-PYVIKNAPS-YLGIEHVGGDFFES----V-PE--ADTILMKW 259 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~----~-~~--~D~i~~~~ 259 (356)
+..+|||||||+|..+..+++. .|+.+++++|. +.+++.++. .++|+++.+|..+. . +. .|+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 4579999999999999999987 68899999996 777777754 26899999998773 1 22 39998765
Q ss_pred cccCCChHHHHHHHHHHHH-hCCCCCEEEEEec
Q 018405 260 VLSSFDDEQSLKLLKNCYK-ALPDGGKLLNVNV 291 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~-~L~pgG~lii~e~ 291 (356)
. |. +...+|+++.+ .|+|||++++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 42 36789999997 9999999999664
No 171
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1
Probab=99.12 E-value=7.7e-11 Score=106.83 Aligned_cols=103 Identities=16% Similarity=0.240 Sum_probs=82.5
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC-C-
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV-P- 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~-~- 250 (356)
...+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|. +.+++.++++ ++++++.+|+.+.. +
T Consensus 64 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~ 142 (317)
T 1dl5_A 64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (317)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred HHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccC
Confidence 345566665 67789999999999999999999887 478999996 7777776543 46999999998732 2
Q ss_pred CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 251 EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 251 ~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
.. |+|++..++|+++ +++.+.|+|||++++....
T Consensus 143 ~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 143 SPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred CCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 23 9999999999986 3678899999999997543
No 172
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=99.12 E-value=1.8e-10 Score=101.77 Aligned_cols=93 Identities=15% Similarity=0.244 Sum_probs=77.6
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCC-CCCCC--cEEEecccccCCCh
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDD 266 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~ 266 (356)
.+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. +++.+..+|+.+ +++++ |+|++..+.+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~---- 159 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPC---- 159 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCC----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCChh----
Confidence 4678999999999999999999988899999996 8888777654 678999999887 65543 9999876532
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 267 EQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 267 ~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
.+++++++|+|||++++..+..
T Consensus 160 -----~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 160 -----KAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp -----CHHHHHHHEEEEEEEEEEEECT
T ss_pred -----hHHHHHHhcCCCcEEEEEEcCH
Confidence 4788999999999999987653
No 173
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}
Probab=99.12 E-value=7.6e-11 Score=109.36 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=79.5
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVL 261 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vl 261 (356)
..+..+|||||||+|.++..++++. ..+++++|...+++.+++. ++++++.+|+.+ +.++. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 5677899999999999999999873 3489999965666655432 569999999988 66544 999997766
Q ss_pred cCCCh-HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 262 SSFDD-EQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 262 h~~~~-~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
|+... .....+++.+++.|+|||++++.+..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 66543 34778999999999999999876543
No 174
>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Probab=99.11 E-value=2.1e-10 Score=106.25 Aligned_cols=96 Identities=15% Similarity=0.124 Sum_probs=80.1
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCC-CC-cEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVP-EA-DTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~-~~-D~i~~~~vlh~ 263 (356)
+..+|||+|||+|.++..+++. +.+++++|. +.+++.++++ .+++++.+|+.+ ..+ .. |+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 568999996 8888777653 258999999998 444 23 99999999997
Q ss_pred ---CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 264 ---FDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 264 ---~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
...+....+++++++.|+|||+++++.
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 334668899999999999999999964
No 175
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Probab=99.11 E-value=9.8e-11 Score=103.04 Aligned_cols=100 Identities=15% Similarity=0.232 Sum_probs=76.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCCC--------CCC
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFES--------VPE 251 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~--------~~~ 251 (356)
..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.++++ ++++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 55678999999999999999999999999999996 7777665432 2589999999874 233
Q ss_pred -C-cEEEeccccc----------------CCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 252 -A-DTILMKWVLS----------------SFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 252 -~-D~i~~~~vlh----------------~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
. |+|++.-..+ |........+++.+.++|+|||+++++-
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 9999973322 2222336789999999999999999853
No 176
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=99.11 E-value=1e-10 Score=104.81 Aligned_cols=98 Identities=14% Similarity=0.272 Sum_probs=77.9
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC---CCC-CC-cEEEecccc
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE---SVP-EA-DTILMKWVL 261 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~-~~-D~i~~~~vl 261 (356)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ +|++++.+|..+ ..+ +. |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999997 8888877642 589999999876 233 33 999986554
Q ss_pred cCCChHH--HHHHHHHHHHhCCCCCEEEEEec
Q 018405 262 SSFDDEQ--SLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 262 h~~~~~~--~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+...... ...++++++++|+|||.+++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 4322222 26899999999999999988654
No 177
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=99.11 E-value=5.8e-11 Score=102.68 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=79.8
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC--C---CCC-cEEEe
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES--V---PEA-DTILM 257 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~--~---~~~-D~i~~ 257 (356)
.+..+|||||||+|..+..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+. . +.. |+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 3568999999999999999999999999999996 7877776543 4799999998762 1 233 99999
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
....+ +...+|+++.++|+|||++++.+...
T Consensus 133 ~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 133 DAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred CCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 77754 35789999999999999999976554
No 178
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=99.10 E-value=8e-11 Score=102.44 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=77.9
Q ss_pred CCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--CC------CCC-cE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--SV------PEA-DT 254 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~------~~~-D~ 254 (356)
++.+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++|+++.+|..+ +. ++. |+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 568999999999999999999886 789999996 7666655432 589999999876 21 233 99
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
|++... .+....+|+++.++|+|||.+++.+.....
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 988654 244678999999999999999997776543
No 179
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=99.09 E-value=1.4e-10 Score=103.57 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=73.9
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------CCCceEEEccCCCC--CC-CC-cEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------YLGIEHVGGDFFES--VP-EA-DTI 255 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~--~~-~~-D~i 255 (356)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .+ +. |+|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fDvI 161 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---CCCCCEEEE
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhhcCCCccEE
Confidence 3578999999999999999999877888999996 888777643 25899999998873 22 23 999
Q ss_pred EecccccCCChHHH--HHHHHHHHHhCCCCCEEEEEe
Q 018405 256 LMKWVLSSFDDEQS--LKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 256 ~~~~vlh~~~~~~~--~~~L~~~~~~L~pgG~lii~e 290 (356)
++...-+..+.+.. ..+++.++++|+|||++++..
T Consensus 162 i~D~~~p~~~~~~l~~~~f~~~~~~~LkpgG~lv~~~ 198 (294)
T 3adn_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EECC----------CCHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCccCcchhccHHHHHHHHHHhcCCCCEEEEec
Confidence 99555443332222 789999999999999999864
No 180
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=99.09 E-value=3.3e-11 Score=103.56 Aligned_cols=98 Identities=19% Similarity=0.100 Sum_probs=78.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---CC-----CC-c
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---VP-----EA-D 253 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~-----~~-D 253 (356)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|..+. .+ .. |
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3568999999999999999999988 789999996 7777766542 4699999998652 11 33 9
Q ss_pred EEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 254 TILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
+|++... .+....+++++.++|+|||++++.+...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 9986443 24468899999999999999999776653
No 181
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0
Probab=99.08 E-value=3.8e-10 Score=94.48 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCC----------
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESV---------- 249 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~---------- 249 (356)
.+..+.+.+.-+++..+|||+|||+|.++..++++ ..+++++|+... ...++++++.+|+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhh
Confidence 34566666764567899999999999999999987 778999997432 22368999999998731
Q ss_pred ----CCCcEEEecccccC---CC-h-----HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 250 ----PEADTILMKWVLSS---FD-D-----EQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 250 ----~~~D~i~~~~vlh~---~~-~-----~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
...|+|++...... +. + +.+..+|+.+.++|+|||++++..
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 22399998532211 11 1 224678999999999999999744
No 182
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}
Probab=99.07 E-value=3.8e-10 Score=94.61 Aligned_cols=105 Identities=22% Similarity=0.203 Sum_probs=76.8
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC---------CeEEEccchHHHHhCCCCCCceEE-EccCCC-C---
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR---------IKGINYDLPYVIKNAPSYLGIEHV-GGDFFE-S--- 248 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~---------~~~~~~D~~~~~~~a~~~~~v~~~-~~D~~~-~--- 248 (356)
.+.+.+..+.+..+|||||||+|.++..+++.++. .+++++|...+ ...++++++ .+|+.. +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 34444553567789999999999999999999865 78999997432 123578999 999876 2
Q ss_pred -----CCC-C-cEEEecccccC----CChHH-----HHHHHHHHHHhCCCCCEEEEEec
Q 018405 249 -----VPE-A-DTILMKWVLSS----FDDEQ-----SLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 249 -----~~~-~-D~i~~~~vlh~----~~~~~-----~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
.++ . |+|++...+|. ..+.. ...++++++++|+|||++++...
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 222 3 99998654443 12211 15889999999999999998754
No 183
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Probab=99.07 E-value=1e-10 Score=102.10 Aligned_cols=94 Identities=16% Similarity=0.317 Sum_probs=72.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC--------------CCCCceEEEccCCCC----CCC
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP--------------SYLGIEHVGGDFFES----VPE 251 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------~~~~v~~~~~D~~~~----~~~ 251 (356)
.++..+|||||||+|.++..+++.+|+..++++|. +.+++.++ ..++++++.+|+.+. ++.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34678999999999999999999999999999996 77766552 225799999998862 333
Q ss_pred C--cEEEecccccCCChHHH-----------HHHHHHHHHhCCCCCEEEEE
Q 018405 252 A--DTILMKWVLSSFDDEQS-----------LKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 252 ~--D~i~~~~vlh~~~~~~~-----------~~~L~~~~~~L~pgG~lii~ 289 (356)
. |.|++. ++++.. ..+++++.++|+|||+|++.
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 3 666542 233211 48999999999999999995
No 184
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*
Probab=99.07 E-value=3.6e-10 Score=100.68 Aligned_cols=94 Identities=20% Similarity=0.209 Sum_probs=74.9
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC-CCC---cEEEec--
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV-PEA---DTILMK-- 258 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-~~~---D~i~~~-- 258 (356)
+..+|||+|||+|.++..+++. |+.+++++|. +.+++.++.+ ++++++.+|++++. ... |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 5579999999999999999999 9999999996 8888777643 35999999998843 245 999996
Q ss_pred ----------ccccCCChH------HHHHHHHHHH-HhCCCCCEEEE
Q 018405 259 ----------WVLSSFDDE------QSLKLLKNCY-KALPDGGKLLN 288 (356)
Q Consensus 259 ----------~vlh~~~~~------~~~~~L~~~~-~~L~pgG~lii 288 (356)
.+. |.+.. +...+++++. +.++|||++++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 333 33321 1237899999 99999999997
No 185
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6
Probab=99.07 E-value=2.1e-10 Score=104.45 Aligned_cols=97 Identities=21% Similarity=0.251 Sum_probs=75.0
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC-------CCceEEEccCCC-CCC-CC-cEEEeccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY-------LGIEHVGGDFFE-SVP-EA-DTILMKWV 260 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-------~~v~~~~~D~~~-~~~-~~-D~i~~~~v 260 (356)
..+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.| +. |+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345689999999999999988876 45689999975566655432 579999999988 666 33 99999865
Q ss_pred ccCCC-hHHHHHHHHHHHHhCCCCCEEEE
Q 018405 261 LSSFD-DEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 261 lh~~~-~~~~~~~L~~~~~~L~pgG~lii 288 (356)
.+++. .+....+|+.+.++|+|||+++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 55432 23467899999999999999874
No 186
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=99.06 E-value=1.4e-10 Score=99.47 Aligned_cols=95 Identities=9% Similarity=0.087 Sum_probs=75.1
Q ss_pred CceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC--------CCceEEEccCCC---CC-CCC-cEEEec
Q 018405 194 VKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFE---SV-PEA-DTILMK 258 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~---~~-~~~-D~i~~~ 258 (356)
..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|..+ .. ++. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999996 8777776542 479999999866 23 233 999886
Q ss_pred ccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 259 WVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 259 ~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
... .+...+++++.++|+|||.+++.+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 443 335779999999999999999965544
No 187
>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}
Probab=99.05 E-value=1e-09 Score=97.59 Aligned_cols=96 Identities=17% Similarity=0.142 Sum_probs=72.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc--hHHHHhCCCC----------------CCceEEEccCCCC---C
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL--PYVIKNAPSY----------------LGIEHVGGDFFES---V 249 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~----------------~~v~~~~~D~~~~---~ 249 (356)
..+..+|||||||+|.++..+++.. ..+++++|. +.+++.++.+ +++++...|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3466799999999999999888753 348999997 5665554321 2677886664431 1
Q ss_pred -----CCC-cEEEecccccCCChHHHHHHHHHHHHhCC---C--CCEEEEE
Q 018405 250 -----PEA-DTILMKWVLSSFDDEQSLKLLKNCYKALP---D--GGKLLNV 289 (356)
Q Consensus 250 -----~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~---p--gG~lii~ 289 (356)
+.. |+|++..++||. ++...+++.+.++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~--~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFH--QAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCG--GGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccCh--HHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 223 999999999986 448899999999999 9 9998774
No 188
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=99.05 E-value=1.3e-10 Score=95.90 Aligned_cols=106 Identities=7% Similarity=0.003 Sum_probs=78.8
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---CCCC
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---VPEA 252 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~~~ 252 (356)
+++.+....+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ ++++++.+|+.+. .+..
T Consensus 22 ~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 100 (177)
T 2esr_A 22 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR 100 (177)
T ss_dssp HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred HHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCC
Confidence 3333432346789999999999999999887 6678999996 8887777542 3689999998762 2233
Q ss_pred -cEEEecccccCCChHHHHHHHHHHH--HhCCCCCEEEEEeccc
Q 018405 253 -DTILMKWVLSSFDDEQSLKLLKNCY--KALPDGGKLLNVNVTI 293 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~~~~~L~~~~--~~L~pgG~lii~e~~~ 293 (356)
|+|++...+|. ......++.+. ++|+|||++++.....
T Consensus 101 fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 101 FDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp EEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 99999876542 33567777776 8999999999976544
No 189
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=99.04 E-value=1.1e-10 Score=99.29 Aligned_cols=97 Identities=18% Similarity=0.160 Sum_probs=77.3
Q ss_pred CCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--CCCC-CcEEEeccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--SVPE-ADTILMKWV 260 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~~~~-~D~i~~~~v 260 (356)
+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|..+ +... .|+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 567999999999999999999988 789999996 8887777643 468999999865 2222 499987632
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
. .+...++++++++|+|||.+++.+....
T Consensus 136 ---~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 136 ---V--FNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp ---T--SCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred ---h--hhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 1 3468999999999999999998665543
No 190
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=99.03 E-value=2.3e-10 Score=95.12 Aligned_cols=107 Identities=12% Similarity=0.019 Sum_probs=78.3
Q ss_pred HHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC-----
Q 018405 183 KVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV----- 249 (356)
Q Consensus 183 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~----- 249 (356)
.+++.+....+..+|||+|||+|.++..+++ .+..+++++|. +.+++.++++ ++++++.+|+.+..
T Consensus 34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 3444443244678999999999999998887 45678999996 8888777643 46899999987621
Q ss_pred -CCC-cEEEecccccCCChHHHHHHHHHH--HHhCCCCCEEEEEeccc
Q 018405 250 -PEA-DTILMKWVLSSFDDEQSLKLLKNC--YKALPDGGKLLNVNVTI 293 (356)
Q Consensus 250 -~~~-D~i~~~~vlh~~~~~~~~~~L~~~--~~~L~pgG~lii~e~~~ 293 (356)
+.. |+|++...++... ....++.+ .++|+|||++++.....
T Consensus 113 ~~~~fD~i~~~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYAKQE---IVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp TTCCEEEEEECCCGGGCC---HHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cCCCCCEEEECCCCCchh---HHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 233 9999987765333 34555666 88899999999865544
No 191
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.02 E-value=7.2e-10 Score=100.24 Aligned_cols=107 Identities=12% Similarity=0.156 Sum_probs=79.2
Q ss_pred HHhcCCCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CC-CCC-cE
Q 018405 186 ESYKGFEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SV-PEA-DT 254 (356)
Q Consensus 186 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~-~~~-D~ 254 (356)
..+. ..+..+|||+|||+|..+..+++..+ ..+++++|. +..++.++++ .+++++.+|+.+ +. +.. |+
T Consensus 112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence 3444 66788999999999999999999875 478999996 7777766543 478999999887 32 333 99
Q ss_pred EEec------ccccCCC-------hHH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 255 ILMK------WVLSSFD-------DEQ-------SLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 255 i~~~------~vlh~~~-------~~~-------~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|++. .++++.+ .++ ..++|+++.+.|+|||++++.....
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 9973 2344322 221 2589999999999999999976544
No 192
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=99.02 E-value=1.7e-10 Score=100.76 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=77.1
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--C-C------CCC-
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--S-V------PEA- 252 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~------~~~- 252 (356)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|..+ + . +..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3568999999999999999999988 789999996 7777766542 478999999865 2 1 233
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|+|++.... .....+++++.++|+|||.+++.+...
T Consensus 158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence 999986432 346889999999999999998866544
No 193
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=99.01 E-value=1.8e-10 Score=100.07 Aligned_cols=98 Identities=21% Similarity=0.174 Sum_probs=77.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---C---------
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---V--------- 249 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~--------- 249 (356)
..+..+|||||||+|..+..+++.+| ..+++++|. +.+++.++++ ++++++.+|..+. .
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34678999999999999999999987 689999996 8777776543 3589999997651 1
Q ss_pred ------C-CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 250 ------P-EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 250 ------~-~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
+ .. |+|++.... +....+|+++.++|+|||++++.+...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred cccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 1 33 999987543 346789999999999999999976544
No 194
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=99.01 E-value=3.2e-10 Score=97.57 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=79.4
Q ss_pred HHHHHHhc-CCCCCceEEEEcCCccHHHHHHHHhCC------CCeEEEccc-hHHHHhCCC-----------CCCceEEE
Q 018405 182 EKVLESYK-GFEHVKKLVDVGGGLGATLNMIISKYP------RIKGINYDL-PYVIKNAPS-----------YLGIEHVG 242 (356)
Q Consensus 182 ~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~~p------~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~ 242 (356)
..+++.+. .+.+..+|||||||+|.++..+++..+ ..+++++|. +.+++.+++ .++++++.
T Consensus 72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 151 (227)
T 1r18_A 72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 151 (227)
T ss_dssp HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 34444442 255678999999999999999998765 368999996 777777654 24799999
Q ss_pred ccCCCCCCC-C--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 243 GDFFESVPE-A--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 243 ~D~~~~~~~-~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+|..++++. + |+|++...+|+++ +++.+.|+|||++++.-.
T Consensus 152 ~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 152 GDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 998875543 3 9999999999875 468899999999998643
No 195
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*
Probab=99.00 E-value=6.3e-10 Score=94.72 Aligned_cols=95 Identities=15% Similarity=0.110 Sum_probs=78.8
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-SVPEA-DTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~ 263 (356)
.++.+|||||||+|.++..+. |..+++++|+ +.+++.++.. .+..+...|... +.+.. |+|++.-++|+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~ 180 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPL 180 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHH
Confidence 468899999999999999877 8999999997 8888777653 457788999998 55544 99999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+.+++....+ ++.+.|+|+|.++-..
T Consensus 181 LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 181 LEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred hhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 9777666666 8999999998777766
No 196
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Probab=99.00 E-value=9.2e-10 Score=101.27 Aligned_cols=112 Identities=19% Similarity=0.085 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C
Q 018405 178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S 248 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~ 248 (356)
...+..++.... +.+..+|||+|||+|.++..++... |+.+++++|. +.+++.|+.+ ++++++.+|+.+ +
T Consensus 189 ~~la~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~ 267 (354)
T 3tma_A 189 PVLAQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP 267 (354)
T ss_dssp HHHHHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG
T ss_pred HHHHHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc
Confidence 334555666555 7788999999999999999999987 8899999996 8888877653 379999999988 4
Q ss_pred CC-CC-cEEEecccccCCCh--H----HHHHHHHHHHHhCCCCCEEEEEe
Q 018405 249 VP-EA-DTILMKWVLSSFDD--E----QSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 249 ~~-~~-D~i~~~~vlh~~~~--~----~~~~~L~~~~~~L~pgG~lii~e 290 (356)
.+ .. |+|++.-..+.... . ....+++++++.|+|||+++++.
T Consensus 268 ~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 268 RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 43 23 99999544332111 1 13689999999999999999954
No 197
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=99.00 E-value=5.4e-10 Score=99.28 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCC---------CCCceEEEccCCC-
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPS---------YLGIEHVGGDFFE- 247 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~- 247 (356)
....++..++ ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+
T Consensus 87 ~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 87 DAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS 165 (280)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC
T ss_pred HHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc
Confidence 3445666666 778889999999999999999986 57889999996 777766643 2479999999987
Q ss_pred CCCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 248 SVPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 248 ~~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
+.+.. |+|++ +.++ ...+|+++.++|+|||++++..+.
T Consensus 166 ~~~~~~~D~v~~-----~~~~--~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 166 ELPDGSVDRAVL-----DMLA--PWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCCTTCEEEEEE-----ESSC--GGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCCceeEEEE-----CCcC--HHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45433 99988 2333 358899999999999999997753
No 198
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=99.00 E-value=1.7e-09 Score=94.15 Aligned_cols=101 Identities=17% Similarity=0.231 Sum_probs=80.1
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC-CC-
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV-PE- 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~-~~- 251 (356)
..++..+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. +++++..+|+.+.. +.
T Consensus 81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 157 (248)
T 2yvl_A 81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG 157 (248)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence 45555555 677889999999999999999998 678999996 7777766542 57899999998854 43
Q ss_pred C-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 252 A-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 252 ~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
. |+|++ +.++ ...+++++.++|+|||++++..+.
T Consensus 158 ~~D~v~~-----~~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 158 IFHAAFV-----DVRE--PWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp CBSEEEE-----CSSC--GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred cccEEEE-----CCcC--HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 3 99987 2332 468899999999999999997753
No 199
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=98.99 E-value=8.4e-10 Score=97.06 Aligned_cols=106 Identities=16% Similarity=0.050 Sum_probs=74.2
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC--C------CceEE--EccCCCCCCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY--L------GIEHV--GGDFFESVPE 251 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~~~~~ 251 (356)
..+.+... +.+..+|||||||+|.++..+++. .+++++|+..++..++.. . ++.++ .+|+.+-.+.
T Consensus 64 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 139 (265)
T 2oxt_A 64 AWMEERGY-VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVE 139 (265)
T ss_dssp HHHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCC
Confidence 44444422 567789999999999999998886 579999974453333221 2 68888 8999872233
Q ss_pred -CcEEEecccccCCChHH-----HHHHHHHHHHhCCCCC--EEEEEecc
Q 018405 252 -ADTILMKWVLSSFDDEQ-----SLKLLKNCYKALPDGG--KLLNVNVT 292 (356)
Q Consensus 252 -~D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~pgG--~lii~e~~ 292 (356)
.|+|++... ++.++.. ...+|+.++++|+||| .+++-...
T Consensus 140 ~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 140 RTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 399999766 4432211 1248999999999999 88885443
No 200
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}
Probab=98.99 E-value=6.2e-10 Score=95.68 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=75.7
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-----CCCeEEEccc-hHHHHhCCCC-----------CCceEEEccCCCCC----
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-----PRIKGINYDL-PYVIKNAPSY-----------LGIEHVGGDFFESV---- 249 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~~~---- 249 (356)
..+..+|||||||+|.++..+++.. |..+++++|. +.+++.++++ ++++++.+|..+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 5677899999999999999999986 5679999996 7777766542 47999999988743
Q ss_pred -C-CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 250 -P-EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 250 -~-~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+ .. |+|++...+|++. +++.+.|+|||++++.-.
T Consensus 158 ~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 158 KELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEc
Confidence 2 22 9999999998764 578899999999999654
No 201
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=98.97 E-value=2.4e-10 Score=93.49 Aligned_cols=95 Identities=14% Similarity=0.009 Sum_probs=72.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----C-CceEEEccCCCCC------C-CCcEEEecc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----L-GIEHVGGDFFESV------P-EADTILMKW 259 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~------~-~~D~i~~~~ 259 (356)
+..+|||+|||+|.++..+++..+. ++++|. +.+++.++++ . +++++.+|+.+.. + ..|+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5689999999999999999998765 999996 8888777653 2 7899999987621 1 239999988
Q ss_pred cccCCChHHHHHHHHHHH--HhCCCCCEEEEEeccc
Q 018405 260 VLSSFDDEQSLKLLKNCY--KALPDGGKLLNVNVTI 293 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~--~~L~pgG~lii~e~~~ 293 (356)
.+| -. ...+++.+. ++|+|||++++.....
T Consensus 119 ~~~-~~---~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA-MD---LAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTT-SC---TTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCc-hh---HHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 776 22 234445554 9999999999866544
No 202
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*
Probab=98.97 E-value=1.6e-09 Score=97.36 Aligned_cols=96 Identities=20% Similarity=0.135 Sum_probs=68.1
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-----hHHHHhCC--CC--CCceEEEc-cCCC-CCCCCcEEEecc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-----PYVIKNAP--SY--LGIEHVGG-DFFE-SVPEADTILMKW 259 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~a~--~~--~~v~~~~~-D~~~-~~~~~D~i~~~~ 259 (356)
+++..+|||||||+|.++..++++ .+++++|. +..++... .. +++.++.+ |+.. +....|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 556789999999999999999987 36888886 33222221 11 56899999 8887 433349999966
Q ss_pred ccc---CCChHH-HHHHHHHHHHhCCCCCEEEEE
Q 018405 260 VLS---SFDDEQ-SLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 260 vlh---~~~~~~-~~~~L~~~~~~L~pgG~lii~ 289 (356)
.++ +..+.. ...+|+.++++|+|||.+++.
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k 190 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 190 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 553 222221 226899999999999988873
No 203
>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*
Probab=98.97 E-value=8.4e-10 Score=97.61 Aligned_cols=105 Identities=17% Similarity=0.033 Sum_probs=73.4
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCC--C------CceEE--EccCCC-CCC
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSY--L------GIEHV--GGDFFE-SVP 250 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~--~------~v~~~--~~D~~~-~~~ 250 (356)
..+.+... +++..+|||+|||+|.++..+++. .+++++|+..+...++.. . ++.++ .+|+.+ +..
T Consensus 72 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 147 (276)
T 2wa2_A 72 AWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPF 147 (276)
T ss_dssp HHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCC
T ss_pred HHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCC
Confidence 34444422 567789999999999999999887 579999974453333221 2 68899 899887 422
Q ss_pred CCcEEEecccccCCChHH-----HHHHHHHHHHhCCCCC--EEEEEec
Q 018405 251 EADTILMKWVLSSFDDEQ-----SLKLLKNCYKALPDGG--KLLNVNV 291 (356)
Q Consensus 251 ~~D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~pgG--~lii~e~ 291 (356)
..|+|++... ++.++.. ...+|+.+.++|+||| .+++...
T Consensus 148 ~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 148 QADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred CcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeC
Confidence 2399999776 4432211 1248999999999999 8888443
No 204
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=98.97 E-value=1.5e-09 Score=93.21 Aligned_cols=94 Identities=20% Similarity=0.147 Sum_probs=75.1
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCC-----------CCCceEEEccCCCCC-CC-C-cE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPS-----------YLGIEHVGGDFFESV-PE-A-DT 254 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~-~~-~-D~ 254 (356)
..+..+|||||||+|..+..+++.. |..+++++|. +.+++.+++ .++++++.+|..... +. . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999875 6679999996 777776643 247999999987632 22 3 99
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
|++...++++. +++.+.|+|||++++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99999988764 4688999999999997543
No 205
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=98.95 E-value=3.1e-10 Score=97.66 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=77.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC---CC-----CC-
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES---VP-----EA- 252 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~~-----~~- 252 (356)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|+.+. .+ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34678999999999999999999887 789999996 7777766542 5799999998652 11 33
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|+|++... ......+++++.++|+|||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 99998543 2346789999999999999999977554
No 206
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=98.95 E-value=2.7e-10 Score=96.20 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=74.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCC-CC----CC-CcEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFE-SV----PE-ADTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~----~~-~D~i~~ 257 (356)
+..+|||+|||+|.++..++.+.. .+++++|. +.+++.++++ ++++++.+|+.+ .. .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 457999999999999998777643 58999996 8888777642 478999999866 21 24 599999
Q ss_pred cccccCCChHHHHHHHHHH--HHhCCCCCEEEEEeccc
Q 018405 258 KWVLSSFDDEQSLKLLKNC--YKALPDGGKLLNVNVTI 293 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~--~~~L~pgG~lii~e~~~ 293 (356)
...+| . .....+++.+ .++|+|||.+++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 87755 3 3467888888 56799999999866543
No 207
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=98.94 E-value=4.2e-10 Score=97.60 Aligned_cols=97 Identities=18% Similarity=0.123 Sum_probs=76.8
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC--C-C------CCC-
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE--S-V------PEA- 252 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~--~-~------~~~- 252 (356)
.+..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|..+ + . +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3578999999999999999999987 789999996 7777766542 479999999865 2 1 233
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|+|++... ......+++++.++|+|||.+++.+...
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~~ 184 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTLW 184 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 99987532 2457899999999999999998865543
No 208
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=98.94 E-value=3e-10 Score=98.14 Aligned_cols=97 Identities=19% Similarity=0.148 Sum_probs=77.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCC-----CC---CC-cE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFES-----VP---EA-DT 254 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~-----~~---~~-D~ 254 (356)
+..+|||||||+|..+..+++.+| +.+++++|. +..++.++++ ++++++.+|..+. .+ .. |+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 567999999999999999999987 789999996 7777776542 4699999997541 11 33 99
Q ss_pred EEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 255 ILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
|++... .++...+++++.++|+|||++++.+....
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 987654 24468899999999999999999776543
No 209
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*
Probab=98.94 E-value=2.3e-11 Score=105.70 Aligned_cols=133 Identities=17% Similarity=0.119 Sum_probs=92.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCC-CcEEEeccccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPE-ADTILMKWVLS 262 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~-~D~i~~~~vlh 262 (356)
+..+|||+|||+|..+..+++.. .+++++|. +.+++.++.+ ++++++.+|+.+ +.+. .|+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 57899999999999999999864 78999996 8888777643 479999999987 4233 39999999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcceeE
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGVNY 342 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 342 (356)
+.++ ....+.+++++|+|||.+++........ ..... . -.....+++..++...|.-.+..
T Consensus 156 ~~~~--~~~~~~~~~~~L~pgG~~i~~~~~~~~~-------------~~~~~--l--p~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDY--ATAETFDIRTMMSPDGFEIFRLSKKITN-------------NIVYF--L--PRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGG--GGSSSBCTTTSCSSCHHHHHHHHHHHCS-------------CEEEE--E--ETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccch--hhhHHHHHHhhcCCcceeHHHHHHhhCC-------------ceEEE--C--CCCCCHHHHHHHhccCCCEEEEe
Confidence 8754 3447788999999999855422111000 00000 0 11235678888887777655554
Q ss_pred EEcc
Q 018405 343 EYGA 346 (356)
Q Consensus 343 ~~~~ 346 (356)
....
T Consensus 217 ~~~~ 220 (241)
T 3gdh_A 217 NFLN 220 (241)
T ss_dssp EEET
T ss_pred hhhc
Confidence 4443
No 210
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=98.93 E-value=4.9e-10 Score=99.76 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=76.8
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCCC---CCCC-cEEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFES---VPEA-DTIL 256 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~~~~-D~i~ 256 (356)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .++. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999996 877776543 25799999998762 2333 9999
Q ss_pred ecccccCCChHHH--HHHHHHHHHhCCCCCEEEEE
Q 018405 257 MKWVLSSFDDEQS--LKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 257 ~~~vlh~~~~~~~--~~~L~~~~~~L~pgG~lii~ 289 (356)
+....+..+.+.. ..++++++++|+|||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 8655443333332 69999999999999999985
No 211
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=98.93 E-value=5.3e-10 Score=101.61 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=76.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC---CCCC-C-cEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE---SVPE-A-DTI 255 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~---~~~~-~-D~i 255 (356)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ ..++ . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4678999999999999999999888889999996 888776653 2589999999865 2232 3 999
Q ss_pred EecccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 018405 256 LMKWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 256 ~~~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~ 289 (356)
++....+..+.+. ...++++++++|+|||++++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854422211121 478999999999999999985
No 212
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=98.93 E-value=8.7e-10 Score=98.25 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 250 (356)
.+..+++.+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.++++ ++++++.+|+.+ +.+
T Consensus 16 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~ 92 (285)
T 1zq9_A 16 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 92 (285)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence 3456677676 6778899999999999999999975 47888886 7776665432 478999999988 666
Q ss_pred CCcEEEecccccCCChHHHHHHHH--------------HH--HHhCCCCCEEE
Q 018405 251 EADTILMKWVLSSFDDEQSLKLLK--------------NC--YKALPDGGKLL 287 (356)
Q Consensus 251 ~~D~i~~~~vlh~~~~~~~~~~L~--------------~~--~~~L~pgG~li 287 (356)
..|+|+++. -++|+.+....+|. ++ +.+++|||+++
T Consensus 93 ~fD~vv~nl-py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 FFDTCVANL-PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CCSEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hhcEEEEec-CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 569988844 44455444445553 22 46899999653
No 213
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=98.92 E-value=5.7e-10 Score=100.81 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=77.3
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------CCCceEEEccCCC--C-CCCC-cEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------YLGIEHVGGDFFE--S-VPEA-DTI 255 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~--~-~~~~-D~i 255 (356)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ + .++. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999878889999996 777766542 3579999999876 2 2333 999
Q ss_pred EecccccC---CChHH--HHHHHHHHHHhCCCCCEEEEEe
Q 018405 256 LMKWVLSS---FDDEQ--SLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 256 ~~~~vlh~---~~~~~--~~~~L~~~~~~L~pgG~lii~e 290 (356)
++....|. -+.+. ...++++++++|+|||.+++..
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 99766654 21111 3689999999999999999864
No 214
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13
Probab=98.92 E-value=1.9e-09 Score=98.41 Aligned_cols=104 Identities=13% Similarity=0.194 Sum_probs=79.1
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh-CCCCeEEEccc-hHHHHhCCCC-----------------CCceEE
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK-YPRIKGINYDL-PYVIKNAPSY-----------------LGIEHV 241 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~-----------------~~v~~~ 241 (356)
...++..+. ..+..+|||||||+|.++..+++. .|..+++++|. +.+++.++++ ++++++
T Consensus 94 ~~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~ 172 (336)
T 2b25_A 94 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 172 (336)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence 345566665 778889999999999999999998 57789999996 7777666431 579999
Q ss_pred EccCCCC---CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 242 GGDFFES---VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 242 ~~D~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
.+|+.+. .+.. |+|++... + ...+++++.+.|+|||++++....
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~-----~--~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDML-----N--PHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECSS-----S--TTTTHHHHGGGEEEEEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECCC-----C--HHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9999873 3332 99988432 1 234889999999999999987754
No 215
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=98.92 E-value=9.4e-10 Score=92.90 Aligned_cols=96 Identities=10% Similarity=-0.003 Sum_probs=73.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC--CCCC-C-cEEEecccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE--SVPE-A-DTILMKWVL 261 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~--~~~~-~-D~i~~~~vl 261 (356)
+..+|||+|||+|.++..++.+.. .+++++|. +.+++.++++ ++++++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 457999999999999998877643 38999996 8888877643 479999999876 3332 3 999998775
Q ss_pred cCCChHHHHHHHHHHHH--hCCCCCEEEEEecc
Q 018405 262 SSFDDEQSLKLLKNCYK--ALPDGGKLLNVNVT 292 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~--~L~pgG~lii~e~~ 292 (356)
| . .....+++.+.+ +|+|||++++....
T Consensus 133 ~-~--~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 133 R-R--GLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp S-T--TTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred C-C--CcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 5 3 335678888876 49999999886544
No 216
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=98.91 E-value=5.7e-10 Score=100.27 Aligned_cols=99 Identities=20% Similarity=0.189 Sum_probs=74.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC--CC-CCC-cEEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE--SV-PEA-DTIL 256 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~~-D~i~ 256 (356)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +. ++. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4668999999999999999999888889999996 877776643 3689999999865 22 233 9999
Q ss_pred ecccccCCChH--HHHHHHHHHHHhCCCCCEEEEEe
Q 018405 257 MKWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 257 ~~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+....+..+.+ ....++++++++|+|||++++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 86554332211 13578999999999999999854
No 217
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=98.91 E-value=5.9e-10 Score=98.80 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=75.1
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC--CC-CCC-cEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE--SV-PEA-DTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~~-D~i~~ 257 (356)
++.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|..+ +. ++. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998777789999996 888776643 2689999999876 22 233 99999
Q ss_pred cccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 018405 258 KWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 258 ~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~ 289 (356)
....+..+.+. ...++++++++|+|||.+++.
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 55443322111 268999999999999999885
No 218
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=98.90 E-value=5.7e-10 Score=100.58 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=72.1
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCCC--C-CCC-cEEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFES--V-PEA-DTIL 256 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~--~-~~~-D~i~ 256 (356)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. . ++. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999888889999996 877776543 25789999998762 2 233 9999
Q ss_pred ecccccCCChHHH--HHHHHHHHHhCCCCCEEEEEe
Q 018405 257 MKWVLSSFDDEQS--LKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 257 ~~~vlh~~~~~~~--~~~L~~~~~~L~pgG~lii~e 290 (356)
+...-+..+.+.. ..++++++++|+|||++++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8554332222222 689999999999999999854
No 219
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=98.89 E-value=7.4e-10 Score=100.31 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=75.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCCC---CCCC-cEEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFES---VPEA-DTIL 256 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~~---~~~~-D~i~ 256 (356)
.++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+. .++. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878889999996 877776543 25799999998662 2333 9999
Q ss_pred ecccccCCChHHH--HHHHHHHHHhCCCCCEEEEE
Q 018405 257 MKWVLSSFDDEQS--LKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 257 ~~~vlh~~~~~~~--~~~L~~~~~~L~pgG~lii~ 289 (356)
+...-+..+.+.. ..++++++++|+|||++++.
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 229 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 229 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 8643222122222 79999999999999999985
No 220
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=98.89 E-value=1.2e-09 Score=97.25 Aligned_cols=97 Identities=21% Similarity=0.205 Sum_probs=73.2
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC----------------CCCCceEEEccCCCC--CCCC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP----------------SYLGIEHVGGDFFES--VPEA 252 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----------------~~~~v~~~~~D~~~~--~~~~ 252 (356)
.++.+|||||||+|..+..+++. |..+++++|+ +.+++.++ ..++++++.+|..+. .+..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999996 77776543 235789999997651 1333
Q ss_pred -cEEEecccccCCChHH--HHHHHHHHHHhCCCCCEEEEE
Q 018405 253 -DTILMKWVLSSFDDEQ--SLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 253 -D~i~~~~vlh~~~~~~--~~~~L~~~~~~L~pgG~lii~ 289 (356)
|+|++....+..+.+. ...++++++++|+|||++++.
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 9999865543322222 268899999999999999885
No 221
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=98.88 E-value=5.5e-09 Score=87.89 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=67.0
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-CCceEEEccCCCCCCCC-cEEEecccccCCChH
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-LGIEHVGGDFFESVPEA-DTILMKWVLSSFDDE 267 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~~~~~-D~i~~~~vlh~~~~~ 267 (356)
..+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ .+++++.+|+.+. +.. |+|++...+|++++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~-~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEI-SGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGC-CCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHC-CCCeeEEEECCCchhccCc
Confidence 346689999999999999999886 5557999996 8888877654 3799999998872 344 999999999998765
Q ss_pred HHHHHHHHHHHhC
Q 018405 268 QSLKLLKNCYKAL 280 (356)
Q Consensus 268 ~~~~~L~~~~~~L 280 (356)
...++++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 5568999999998
No 222
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.88 E-value=6.9e-10 Score=108.43 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=79.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC---CCCC--CcEEEecc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE---SVPE--ADTILMKW 259 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~---~~~~--~D~i~~~~ 259 (356)
.++.+|||||||.|.++..+++. +.+++++|. +..++.|+.+ .+|+|..+|..+ ..+. .|+|+|..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 36789999999999999999985 678999996 8888776542 258999998865 2333 39999999
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
+|||+++++....+.++.+.|+++|+.++...+..
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~ 177 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVK 177 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence 99999887655556677788888887777665543
No 223
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}
Probab=98.87 E-value=1.2e-09 Score=96.78 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=79.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC-CCCC-cEEEecccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES-VPEA-DTILMKWVL 261 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~-~~~~-D~i~~~~vl 261 (356)
+.+..+|||+|||+|.++..+++..+..+++++|. +.+++.++++ +++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 55778999999999999999999988889999996 8888777642 4688999999874 3223 999886543
Q ss_pred cCCChHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 262 SSFDDEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
....+++++.+.|+|||++++.+...
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 35678999999999999999877654
No 224
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=98.85 E-value=1.2e-09 Score=97.82 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=72.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----------CCCceEEEccCCC--CC-CCC-cEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----------YLGIEHVGGDFFE--SV-PEA-DTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~v~~~~~D~~~--~~-~~~-D~i~~ 257 (356)
++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +. ++. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999878889999996 777766543 2589999999765 22 233 99997
Q ss_pred cccccCCCh-H--HHHHHHHHHHHhCCCCCEEEEE
Q 018405 258 KWVLSSFDD-E--QSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 258 ~~vlh~~~~-~--~~~~~L~~~~~~L~pgG~lii~ 289 (356)
...-+.... . ...+++++++++|+|||++++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 433220110 0 1268999999999999999985
No 225
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}
Probab=98.84 E-value=2.4e-09 Score=98.38 Aligned_cols=95 Identities=22% Similarity=0.253 Sum_probs=70.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC-------CCCceEEEccCCC-CCCCC-cEEEecccccC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS-------YLGIEHVGGDFFE-SVPEA-DTILMKWVLSS 263 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-------~~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~ 263 (356)
+..+|||||||+|.++...+++. -.+++++|...+++.|++ .++|+++.+|+.+ ..|+. |+|++-..-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 46799999999999987666643 347899996445555543 2679999999988 67765 99988444333
Q ss_pred CChH-HHHHHHHHHHHhCCCCCEEEE
Q 018405 264 FDDE-QSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 264 ~~~~-~~~~~L~~~~~~L~pgG~lii 288 (356)
+..+ ....++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 3323 467888888899999998764
No 226
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=98.84 E-value=8e-09 Score=98.00 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=82.6
Q ss_pred HHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CC-CC
Q 018405 185 LESYKGFEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VP-EA 252 (356)
Q Consensus 185 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~-~~ 252 (356)
...++ ..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++.+ ++++++.+|+.+ + ++ ..
T Consensus 252 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 252 SIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred HHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence 33444 667789999999999999999999887 79999996 7766655432 478999999887 3 44 33
Q ss_pred -cEEEe------cccccCCChH-------HH-------HHHHHHHHHhCCCCCEEEEEecccC
Q 018405 253 -DTILM------KWVLSSFDDE-------QS-------LKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 253 -D~i~~------~~vlh~~~~~-------~~-------~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
|+|++ ..++++.++. +. .++|+++.+.|+|||++++.+....
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 99986 4455554432 11 6899999999999999999876553
No 227
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=98.81 E-value=6e-09 Score=91.47 Aligned_cols=89 Identities=11% Similarity=0.096 Sum_probs=72.6
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----------CCceEEEccCCCCCCCCcEEEeccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----------LGIEHVGGDFFESVPEADTILMKWV 260 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~v~~~~~D~~~~~~~~D~i~~~~v 260 (356)
..+.+|||||||+|..+..+++. + .+++++|+ +.+++.++++ ++++++.+|..+.....|+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES--
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC--
Confidence 35689999999999999999988 7 89999996 8899988753 47899999987733223999985
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
.+++ ..++++++++|+|||.+++.
T Consensus 147 ---~~dp--~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPD--IHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp ---SCCC--HHHHHHHHTTEEEEEEEEEE
T ss_pred ---CCCh--HHHHHHHHHhcCCCcEEEEE
Confidence 2332 35999999999999999985
No 228
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Probab=98.80 E-value=1.7e-08 Score=93.45 Aligned_cols=131 Identities=15% Similarity=0.050 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~ 250 (356)
....++... +.+..+|||+|||+|.++..++...+..+++++|. +.+++.|+.+ ++++++.+|+.+ +.+
T Consensus 206 la~~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~ 283 (373)
T 3tm4_A 206 IANAMIELA--ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY 283 (373)
T ss_dssp HHHHHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT
T ss_pred HHHHHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc
Confidence 344444433 56788999999999999999999888678999996 8888877653 478999999998 554
Q ss_pred C-C-cEEEecccccCCC-----hHH-HHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCcc
Q 018405 251 E-A-DTILMKWVLSSFD-----DEQ-SLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRE 322 (356)
Q Consensus 251 ~-~-D~i~~~~vlh~~~-----~~~-~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (356)
. . |+|++.-..+... -++ ...+++.+++.| +|+++++..
T Consensus 284 ~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~------------------------------- 330 (373)
T 3tm4_A 284 VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT------------------------------- 330 (373)
T ss_dssp CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-------------------------------
T ss_pred cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-------------------------------
Confidence 3 3 9999965543211 112 267888999988 555555321
Q ss_pred CCHHHHHHHHHHcCCcceeEEEcc
Q 018405 323 RTKQEYSELAIKAGFKGVNYEYGA 346 (356)
Q Consensus 323 ~t~~e~~~ll~~aGf~~~~~~~~~ 346 (356)
+.+.+.+.+++.||+..+..+..
T Consensus 331 -~~~~~~~~~~~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 331 -EKKAIEEAIAENGFEIIHHRVIG 353 (373)
T ss_dssp -CHHHHHHHHHHTTEEEEEEEEEE
T ss_pred -CHHHHHHHHHHcCCEEEEEEEEE
Confidence 24566678899999988877764
No 229
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=98.79 E-value=8.1e-09 Score=89.79 Aligned_cols=105 Identities=10% Similarity=0.179 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC-CCCC-C
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE-SVPE-A 252 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~~-~ 252 (356)
....+++.+. ..+..+|||||||+|.++..++++. .+++++|. +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 18 ~~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~ 94 (244)
T 1qam_A 18 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 94 (244)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence 3456666665 6677899999999999999999986 67899996 777766543 2689999999988 6664 3
Q ss_pred cEEEecccccCCChHHHHHHH--------------HHHHHhCCCCCEEE
Q 018405 253 DTILMKWVLSSFDDEQSLKLL--------------KNCYKALPDGGKLL 287 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L--------------~~~~~~L~pgG~li 287 (356)
+.+++++.-++++.+-..+++ +.+.+.++|+|++.
T Consensus 95 ~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 95 SYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp CCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred CeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 555555655555444334444 33677777777543
No 230
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=98.78 E-value=4.9e-09 Score=92.84 Aligned_cols=103 Identities=13% Similarity=0.117 Sum_probs=76.3
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CC-----CCC-cEE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SV-----PEA-DTI 255 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~-----~~~-D~i 255 (356)
..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++++ .+++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 557789999999999999999998877 78999996 7777665432 478999999876 32 333 999
Q ss_pred Eec------ccccC---CCh-------HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 256 LMK------WVLSS---FDD-------EQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 256 ~~~------~vlh~---~~~-------~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
++. .+++. |+. +...++|+++.+.|+|||++++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 885 22221 111 124789999999999999999976554
No 231
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45
Probab=98.76 E-value=9e-09 Score=94.25 Aligned_cols=100 Identities=13% Similarity=0.210 Sum_probs=79.1
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCC-----CeEEEccc-hHHHHhCCCC-----CCceEEEccCCCCCC-CC-cEEEec
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPR-----IKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFESVP-EA-DTILMK 258 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~~~~-~~-D~i~~~ 258 (356)
.+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.|+.. .++.++.+|.+.+.+ .. |+|++.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 45689999999999999999988765 68999996 7777766542 268899999988543 33 999999
Q ss_pred ccccCCChHHH----------------HHHHHHHHHhCCCCCEEEEEec
Q 018405 259 WVLSSFDDEQS----------------LKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 259 ~vlh~~~~~~~----------------~~~L~~~~~~L~pgG~lii~e~ 291 (356)
-.+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 88777654432 2689999999999999988653
No 232
>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*
Probab=98.76 E-value=1.4e-08 Score=90.07 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=81.4
Q ss_pred CCCCceEEEEcCC------ccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCCCCceE-EEccCCC-CCCCC-cEEEecc
Q 018405 191 FEHVKKLVDVGGG------LGATLNMIISKYP-RIKGINYDL-PYVIKNAPSYLGIEH-VGGDFFE-SVPEA-DTILMKW 259 (356)
Q Consensus 191 ~~~~~~vLDiG~G------~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~v~~-~~~D~~~-~~~~~-D~i~~~~ 259 (356)
+++..+|||+||| +|. ..+++..| +.+++++|+ +. .+++++ +.+|+.+ +.+.. |+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------VSDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------BCSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------CCCCEEEEECccccCCccCcccEEEEcC
Confidence 5677899999994 476 44566666 689999997 44 147999 9999988 54444 9999853
Q ss_pred cccC--------C-ChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHH
Q 018405 260 VLSS--------F-DDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSE 330 (356)
Q Consensus 260 vlh~--------~-~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ 330 (356)
..+. . ..+....+|+.+++.|+|||++++..... + ...++.+
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~--------------------------~---~~~~l~~ 182 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH--------------------------S---WNADLYK 182 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS--------------------------S---CCHHHHH
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc--------------------------C---CHHHHHH
Confidence 3221 0 01235689999999999999999853211 0 1237778
Q ss_pred HHHHcCCcceeEE
Q 018405 331 LAIKAGFKGVNYE 343 (356)
Q Consensus 331 ll~~aGf~~~~~~ 343 (356)
++++.||..+++.
T Consensus 183 ~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 183 LMGHFSWWTAFVT 195 (290)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHHHcCCcEEEEE
Confidence 8888888877665
No 233
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=98.74 E-value=2.7e-09 Score=92.89 Aligned_cols=106 Identities=8% Similarity=0.123 Sum_probs=78.9
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCC-CcE
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPE-ADT 254 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~-~D~ 254 (356)
..+++.+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.++++ ++++++.+|+.+ +++. ...
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 45666665 6678899999999999999999975 78999996 7787777654 478999999988 6653 334
Q ss_pred EEecccccCCChHHHHHHH--------------HHHHHhCCCCCEEEEEe
Q 018405 255 ILMKWVLSSFDDEQSLKLL--------------KNCYKALPDGGKLLNVN 290 (356)
Q Consensus 255 i~~~~vlh~~~~~~~~~~L--------------~~~~~~L~pgG~lii~e 290 (356)
+++++.-++.+.+....++ +.+.++|+|||++.++.
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 5555555555544444444 66899999999887754
No 234
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=98.73 E-value=2.5e-08 Score=93.79 Aligned_cols=106 Identities=17% Similarity=0.131 Sum_probs=78.2
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCC-CC-cEEEe
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVP-EA-DTILM 257 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~-~~-D~i~~ 257 (356)
..+++.+. ..+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+.+..+ .. |+|++
T Consensus 29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 44455454 3456799999999999999999887 6789999996 7777666 589999999988433 33 99999
Q ss_pred cccc----------cCCChHHH-----------------HHHHHHHHHhCCCCCEEEEEec
Q 018405 258 KWVL----------SSFDDEQS-----------------LKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 258 ~~vl----------h~~~~~~~-----------------~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+--. +|++++.. ..+++++.+.|+|||+++++-+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 5221 11323221 2679999999999999998654
No 235
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=98.71 E-value=2.7e-08 Score=89.16 Aligned_cols=101 Identities=18% Similarity=0.273 Sum_probs=72.0
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVPE 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~~ 251 (356)
....+++.+. ..+..+|||||||+|.++..+++. ..+++++|. +.+++.++++ ++++++.+|+.+ +.+.
T Consensus 30 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~ 106 (299)
T 2h1r_A 30 ILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK 106 (299)
T ss_dssp HHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred HHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence 3455666665 667889999999999999999986 458999996 7777666432 579999999988 5555
Q ss_pred CcEEEecccccCCChHHHHHHH---------------HHHHHhCCCCC
Q 018405 252 ADTILMKWVLSSFDDEQSLKLL---------------KNCYKALPDGG 284 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~~~~~~~L---------------~~~~~~L~pgG 284 (356)
.|+|++.. -++++.+....+| +.+.++++|+|
T Consensus 107 ~D~Vv~n~-py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 107 FDVCTANI-PYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp CSEEEEEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CCEEEEcC-CcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 59998854 4556666566666 44678888876
No 236
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=98.70 E-value=3.9e-07 Score=83.55 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=93.6
Q ss_pred CceEEEEcCCccHHHHHH--------HHhC-------CCCeEEEccchHH--------HHhCCC----------C-CC--
Q 018405 194 VKKLVDVGGGLGATLNMI--------ISKY-------PRIKGINYDLPYV--------IKNAPS----------Y-LG-- 237 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l--------~~~~-------p~~~~~~~D~~~~--------~~~a~~----------~-~~-- 237 (356)
..+|+|+|||+|..+..+ .+++ |++++...|+|.- +...++ . .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 589999999999988876 2233 7888888887541 122111 0 01
Q ss_pred -ceEEEccCCC-CCCCC--cEEEecccccCCCh------------------------------------HHHHHHHHHHH
Q 018405 238 -IEHVGGDFFE-SVPEA--DTILMKWVLSSFDD------------------------------------EQSLKLLKNCY 277 (356)
Q Consensus 238 -v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~------------------------------------~~~~~~L~~~~ 277 (356)
+.-+.+.+.. .+|+. |+|+++.+||.+++ .|...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234566666 67765 99999999998762 13456799999
Q ss_pred HhCCCCCEEEEEecccCCCCCCchhh--hhh--hhhhhh-hhhh------------cCCCccCCHHHHHHHHH-HcCCcc
Q 018405 278 KALPDGGKLLNVNVTIPEVPENSATS--REI--SILDTI-CLFQ------------VPHGRERTKQEYSELAI-KAGFKG 339 (356)
Q Consensus 278 ~~L~pgG~lii~e~~~~~~~~~~~~~--~~~--~~~~~~-~~~~------------~~~~~~~t~~e~~~ll~-~aGf~~ 339 (356)
+.|+|||++++.-...++........ ... .....+ -+.. ..-...++.+|++++++ +.||++
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I 292 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI 292 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence 99999999999766554321110000 000 000000 0100 00123479999999998 599998
Q ss_pred eeEEEc
Q 018405 340 VNYEYG 345 (356)
Q Consensus 340 ~~~~~~ 345 (356)
.++...
T Consensus 293 ~~le~~ 298 (374)
T 3b5i_A 293 DKLVVY 298 (374)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 876543
No 237
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=98.69 E-value=1.9e-08 Score=94.85 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=81.1
Q ss_pred HHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-C--CCC-C-
Q 018405 184 VLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-S--VPE-A- 252 (356)
Q Consensus 184 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~~~-~- 252 (356)
+...++ ..+..+|||+|||+|..+..+++..++.+++++|. +..++.++++ -+++++.+|+.+ + ++. .
T Consensus 238 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 238 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred HHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCC
Confidence 344444 56778999999999999999999998889999996 6655554432 257899999887 3 332 3
Q ss_pred cEEEe------cccccCCChH-------HH-------HHHHHHHHHhCCCCCEEEEEeccc
Q 018405 253 DTILM------KWVLSSFDDE-------QS-------LKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 253 D~i~~------~~vlh~~~~~-------~~-------~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
|+|++ ..++++.++. +. .++|+++.+.|+|||++++.+...
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99986 3445554431 11 588999999999999999987654
No 238
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=98.69 E-value=2.4e-08 Score=90.72 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=72.2
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C--CceEEEccCCCCC------CC-CcEEE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L--GIEHVGGDFFESV------PE-ADTIL 256 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~------~~-~D~i~ 256 (356)
+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ + +++++.+|+++.. .. .|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 56799999999999999999854 48999996 8888777643 2 4899999987721 22 39999
Q ss_pred eccc----------ccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 257 MKWV----------LSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 257 ~~~v----------lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+.-. ++.. ++...+++++.++|+|||.+++...
T Consensus 231 ~dPP~~~~~~~~~~~~~~--~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLF--DHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp ECCCSEEECTTCCEEEHH--HHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ECCccccCCchHHHHHHH--HHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 8322 2222 4567999999999999999777543
No 239
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Probab=98.67 E-value=1.2e-07 Score=80.01 Aligned_cols=89 Identities=15% Similarity=0.063 Sum_probs=70.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----C-CceEEEccCCCCCCCCcEEEecccccCC
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----L-GIEHVGGDFFESVPEADTILMKWVLSSF 264 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~-~v~~~~~D~~~~~~~~D~i~~~~vlh~~ 264 (356)
..+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++.+ . +++++.+|+.+.....|+|++...+|.+
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCccc
Confidence 3466899999999999999998873 347999996 7777776543 2 6899999988732234999999988887
Q ss_pred ChHHHHHHHHHHHHhC
Q 018405 265 DDEQSLKLLKNCYKAL 280 (356)
Q Consensus 265 ~~~~~~~~L~~~~~~L 280 (356)
.......+|+++.+.+
T Consensus 126 ~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS 141 (207)
T ss_dssp STTTTHHHHHHHHHHC
T ss_pred cCCchHHHHHHHHHhc
Confidence 6555678899999998
No 240
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=98.66 E-value=6.1e-08 Score=92.28 Aligned_cols=101 Identities=21% Similarity=0.287 Sum_probs=76.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCC-CCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC-cEEEec--
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYP-RIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA-DTILMK-- 258 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~-D~i~~~-- 258 (356)
+..+|||+|||+|..+..+++..+ ..+++++|. +..++.++++ .++.++.+|..+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999996 7777666542 478999999887 3 3344 999871
Q ss_pred ----ccc-------cCCChHH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 259 ----WVL-------SSFDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 259 ----~vl-------h~~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
.++ .+|+.++ ..++|+++.++|+|||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 223 2343322 3578999999999999999876544
No 241
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*
Probab=98.65 E-value=3.8e-08 Score=86.69 Aligned_cols=120 Identities=18% Similarity=0.185 Sum_probs=88.1
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCC--CcEEEeccc
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPE--ADTILMKWV 260 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~--~D~i~~~~v 260 (356)
.+++.+|||+|||+|.++..+++. ...+++++|+ |..++.++++ ++++++.+|..+-.++ +|.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 347889999999999999998876 4568999996 8777766542 6799999999873333 398887533
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcce
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKGV 340 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~ 340 (356)
- ....+|..+.++|+|||+|.+.+....+. ......+.++++.++.|+++.
T Consensus 202 ~------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred C------cHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcEE
Confidence 1 24567888899999999998876653221 001235678888899998764
No 242
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=98.62 E-value=1.7e-08 Score=95.32 Aligned_cols=102 Identities=10% Similarity=0.109 Sum_probs=76.2
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC-cEEEe-
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA-DTILM- 257 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~-D~i~~- 257 (356)
..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++++ . +.++.+|..+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 567889999999999999999998865 68999996 7777766543 4 8888898766 3 2333 99985
Q ss_pred -----ccccc-------CCChHHH-------HHHHHHHHHhCCCCCEEEEEeccc
Q 018405 258 -----KWVLS-------SFDDEQS-------LKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 258 -----~~vlh-------~~~~~~~-------~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
..+++ .|+.++. .++|+++.+.|+|||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 12222 2332222 789999999999999999865443
No 243
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=98.49 E-value=1.1e-06 Score=82.75 Aligned_cols=99 Identities=12% Similarity=0.167 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC---
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP--- 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~--- 250 (356)
...+++.+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.|+.+ ++++++.+|+.+..+
T Consensus 275 ~~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~ 351 (433)
T 1uwv_A 275 VARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP 351 (433)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred HHHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh
Confidence 445555555 566789999999999999999987 568999996 8888777542 479999999987322
Q ss_pred --C--CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 251 --E--ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 251 --~--~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
. .|+|++.- |......+++.+.+ ++|++.+++
T Consensus 352 ~~~~~fD~Vv~dP-----Pr~g~~~~~~~l~~-~~p~~ivyv 387 (433)
T 1uwv_A 352 WAKNGFDKVLLDP-----ARAGAAGVMQQIIK-LEPIRIVYV 387 (433)
T ss_dssp GGTTCCSEEEECC-----CTTCCHHHHHHHHH-HCCSEEEEE
T ss_pred hhcCCCCEEEECC-----CCccHHHHHHHHHh-cCCCeEEEE
Confidence 2 39998832 22212345555543 678777766
No 244
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=98.48 E-value=1.3e-06 Score=79.16 Aligned_cols=142 Identities=13% Similarity=0.151 Sum_probs=104.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC---------------------------CCCceEEEcc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS---------------------------YLGIEHVGGD 244 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------------------------~~~v~~~~~D 244 (356)
.+...||.+|||......++...+++++++-+|+|.+++.-++ .++..++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999999999999999888999999999887654321 1578899999
Q ss_pred CCC-CC---------C-CC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhh
Q 018405 245 FFE-SV---------P-EA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTI 312 (356)
Q Consensus 245 ~~~-~~---------~-~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~ 312 (356)
+.+ ++ . .. .++++-.+|++++.++..++|+.+.+.+ |+|.+++.|.+.+..+... +...+-..
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~----fg~~m~~~ 250 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR----FGAIMQSN 250 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC----HHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch----HHHHHHHH
Confidence 987 32 1 22 8999999999999999999999999987 7888888998876322111 11111100
Q ss_pred h---hhh-cCC-CccCCHHHHHHHHHHcCCc
Q 018405 313 C---LFQ-VPH-GRERTKQEYSELAIKAGFK 338 (356)
Q Consensus 313 ~---~~~-~~~-~~~~t~~e~~~ll~~aGf~ 338 (356)
+ ... ..+ ....+.++..+.|.++||+
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 0 000 111 2346899999999999997
No 245
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=98.47 E-value=4.6e-07 Score=78.79 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CCCCC--c
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SVPEA--D 253 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~~~--D 253 (356)
....+++.+. ..+..+|||||||+|.++..+++. +..+++++|. +.+++.++++ .+++++.+|+.+ ++++. +
T Consensus 19 i~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 96 (249)
T 3ftd_A 19 VLKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE 96 (249)
T ss_dssp HHHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred HHHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence 3456677666 667889999999999999999986 4578999996 8888777654 578999999988 66542 5
Q ss_pred EEEecccccCCChHHHHHHH
Q 018405 254 TILMKWVLSSFDDEQSLKLL 273 (356)
Q Consensus 254 ~i~~~~vlh~~~~~~~~~~L 273 (356)
.+++.+.-++.+.+-..++|
T Consensus 97 ~~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHH
T ss_pred cEEEEECchhccHHHHHHHH
Confidence 66777777766543333333
No 246
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=98.47 E-value=2e-06 Score=78.95 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=91.7
Q ss_pred CceEEEEcCCccHHHHHHHHh-----------------CCCCeEEEccchH------------HHHhC----CCCCCceE
Q 018405 194 VKKLVDVGGGLGATLNMIISK-----------------YPRIKGINYDLPY------------VIKNA----PSYLGIEH 240 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~-----------------~p~~~~~~~D~~~------------~~~~a----~~~~~v~~ 240 (356)
..+|+|+||++|..+..+... .|++.++..|+|. ..+.. ....+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999998887766 4778888889771 11111 11123344
Q ss_pred EE---ccCCC-CCCCC--cEEEecccccCCChHH-------------------------H------------HHHHHHHH
Q 018405 241 VG---GDFFE-SVPEA--DTILMKWVLSSFDDEQ-------------------------S------------LKLLKNCY 277 (356)
Q Consensus 241 ~~---~D~~~-~~~~~--D~i~~~~vlh~~~~~~-------------------------~------------~~~L~~~~ 277 (356)
+. +.|.. .+|.. |+|+++.+||.+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 55555 67766 9999999999765321 1 12377779
Q ss_pred HhCCCCCEEEEEecccCCCC-CCchh-hhhhhhhhhhhhh---------hcCCCccCCHHHHHHHHHHcC-CcceeEEE
Q 018405 278 KALPDGGKLLNVNVTIPEVP-ENSAT-SREISILDTICLF---------QVPHGRERTKQEYSELAIKAG-FKGVNYEY 344 (356)
Q Consensus 278 ~~L~pgG~lii~e~~~~~~~-~~~~~-~~~~~~~~~~~~~---------~~~~~~~~t~~e~~~ll~~aG-f~~~~~~~ 344 (356)
+.|+|||++++.-...++.. .+... .....+.++..-. ...-...++.+|++++++++| |++.++..
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~ 291 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLET 291 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEE
Confidence 99999999999766554420 11100 0001111110000 000134579999999999985 77776543
No 247
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}
Probab=98.45 E-value=2.8e-07 Score=85.55 Aligned_cols=114 Identities=9% Similarity=-0.011 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC--------------------------------------C
Q 018405 177 TCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR--------------------------------------I 218 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~ 218 (356)
....+..++.... +.+...|||.+||+|.++++.+....+ .
T Consensus 186 ~e~lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 186 KETMAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp CHHHHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred cHHHHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 3445566676555 888899999999999999888765433 5
Q ss_pred eEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccC-CC-hHHHHHHHHHHHHhCCC--CC
Q 018405 219 KGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSS-FD-DEQSLKLLKNCYKALPD--GG 284 (356)
Q Consensus 219 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~-~~-~~~~~~~L~~~~~~L~p--gG 284 (356)
+++++|. +.+++.|+.+ ++++++.+|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.|++ ||
T Consensus 265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~ 344 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTW 344 (393)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCC
Confidence 6999996 8888877643 469999999988 44444 99999744322 11 23456667766666665 89
Q ss_pred EEEEEec
Q 018405 285 KLLNVNV 291 (356)
Q Consensus 285 ~lii~e~ 291 (356)
.++++..
T Consensus 345 ~~~iit~ 351 (393)
T 3k0b_A 345 SVYVLTS 351 (393)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 8888764
No 248
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45
Probab=98.45 E-value=1.2e-07 Score=89.91 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-------------CCCeEEEccc-hHHHHhCCCC------C--C
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-------------PRIKGINYDL-PYVIKNAPSY------L--G 237 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~--~ 237 (356)
.+..+++.+. ..+..+|+|.|||+|.++..+.+.. +..+++++|+ +.+++.|+.+ . +
T Consensus 159 v~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~ 237 (445)
T 2okc_A 159 LIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 237 (445)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence 3445555554 4566799999999999999888754 4467899996 7777666432 2 6
Q ss_pred ceEEEccCCC-CCCCC-cEEEecccccCCChH---------------HHHHHHHHHHHhCCCCCEEEEEec
Q 018405 238 IEHVGGDFFE-SVPEA-DTILMKWVLSSFDDE---------------QSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 238 v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~~---------------~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+.+..+|.+. +.... |+|+++-.++..... ....+++++.+.|+|||+++++-+
T Consensus 238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 7899999988 44334 999998666553211 124789999999999999988764
No 249
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=98.45 E-value=3.4e-07 Score=81.47 Aligned_cols=90 Identities=16% Similarity=0.222 Sum_probs=65.6
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCC--
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPE-- 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~-- 251 (356)
.+..+++.+. ..+..+|||||||+|.++..+++. ..+++++|. +.+++.++++ ++++++.+|+.+ ++++
T Consensus 38 i~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~ 114 (295)
T 3gru_A 38 FVNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD 114 (295)
T ss_dssp HHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence 4566777776 677889999999999999999997 457888885 7776666542 689999999998 6665
Q ss_pred CcEEEecccccCCChHHHHHHH
Q 018405 252 ADTILMKWVLSSFDDEQSLKLL 273 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~~~~~~~L 273 (356)
.|+|+++... +++.+-..++|
T Consensus 115 fD~Iv~NlPy-~is~pil~~lL 135 (295)
T 3gru_A 115 FNKVVANLPY-QISSPITFKLI 135 (295)
T ss_dssp CSEEEEECCG-GGHHHHHHHHH
T ss_pred ccEEEEeCcc-cccHHHHHHHH
Confidence 3998866443 34333333333
No 250
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}
Probab=98.43 E-value=8e-07 Score=82.13 Aligned_cols=114 Identities=9% Similarity=-0.023 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC--------------------------------------C
Q 018405 177 TCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR--------------------------------------I 218 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~ 218 (356)
....+..++.... +.+...|+|.+||+|.++++.+....+ .
T Consensus 179 ~e~LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 179 KENMAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp CHHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred cHHHHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 3445566676555 888899999999999999988765433 5
Q ss_pred eEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccC-C-ChHHHHHHHHHHHHhCCC--CC
Q 018405 219 KGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSS-F-DDEQSLKLLKNCYKALPD--GG 284 (356)
Q Consensus 219 ~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~-~-~~~~~~~~L~~~~~~L~p--gG 284 (356)
+++++|. +.+++.|+.+ ++++++.+|+.+ +.+.. |+|++.--.+. + ..++...+.+.+.+.|++ ||
T Consensus 258 ~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~ 337 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTW 337 (384)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCc
Confidence 6999996 8888877653 468999999988 44444 99998744332 2 235677888888888876 89
Q ss_pred EEEEEec
Q 018405 285 KLLNVNV 291 (356)
Q Consensus 285 ~lii~e~ 291 (356)
+++|+..
T Consensus 338 ~~~iit~ 344 (384)
T 3ldg_A 338 SQFILTN 344 (384)
T ss_dssp EEEEEES
T ss_pred EEEEEEC
Confidence 9888765
No 251
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=98.43 E-value=1.2e-07 Score=88.09 Aligned_cols=97 Identities=13% Similarity=0.090 Sum_probs=73.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCC------CCC-cEEEec
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESV------PEA-DTILMK 258 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~------~~~-D~i~~~ 258 (356)
+..+|||+|||+|.++..++.. ..+++++|. +.+++.++.+ ++++++.+|+++.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 6789999999999999999987 567999996 8887777543 35899999987621 233 999984
Q ss_pred ccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 259 WVLSSFDD-------EQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 259 ~vlh~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
-.-+..+. +....+++++.+.|+|||.+++...
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 32211111 3467899999999999999999764
No 252
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=98.41 E-value=6e-07 Score=83.27 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=71.5
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---C--CceEEEccCCCC---CCC-CcEEEecccc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---L--GIEHVGGDFFES---VPE-ADTILMKWVL 261 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~--~v~~~~~D~~~~---~~~-~D~i~~~~vl 261 (356)
++..+|||+|||+|.++..++... .+++++|+ +.+++.++++ . ..++..+|+++. .+. .|+|++.-..
T Consensus 213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 347899999999999999999863 45999996 8888777653 1 235778888762 222 3999985332
Q ss_pred cCCCh-------HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 262 SSFDD-------EQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 262 h~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
..-+. .....+++.+.++|+|||+|+++...
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11111 23468999999999999999976654
No 253
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=98.41 E-value=1.5e-07 Score=87.86 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=74.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCC------CCC-cEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESV------PEA-DTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~------~~~-D~i~~ 257 (356)
+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ ++++++.+|+++.. +.. |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6789999999999999999986 3458999996 7777776543 27899999987621 223 99998
Q ss_pred cccccCCCh-------HHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 258 KWVLSSFDD-------EQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 258 ~~vlh~~~~-------~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
.-..+..+. .....+++++.+.|+|||.+++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 432221111 44678999999999999999887643
No 254
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=98.40 E-value=1.1e-07 Score=89.57 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=75.0
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC------CCceEEEccCCC-C--CCCC-cEEEec
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-S--VPEA-DTILMK 258 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~--~~~~-D~i~~~ 258 (356)
..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++++ .++.++.+|... + .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 567889999999999999999988664 68999996 7777666542 468888888766 2 3333 999873
Q ss_pred c------cccCCCh-------HH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 259 W------VLSSFDD-------EQ-------SLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 259 ~------vlh~~~~-------~~-------~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
- ++..-++ ++ ..++|+++.++|+|||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 2 2222111 11 2388999999999999999865543
No 255
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=98.40 E-value=4.9e-06 Score=75.68 Aligned_cols=152 Identities=16% Similarity=0.166 Sum_probs=91.9
Q ss_pred CCCceEEEEcCCccHHHHHHHHh----------------CCCCeEEEccchH-----HHHhCCC---CCCceE---EEcc
Q 018405 192 EHVKKLVDVGGGLGATLNMIISK----------------YPRIKGINYDLPY-----VIKNAPS---YLGIEH---VGGD 244 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~----------------~p~~~~~~~D~~~-----~~~~a~~---~~~v~~---~~~D 244 (356)
.+..+|+|+||++|..+..+... .|.+.++..|+|. ..+.... ..+-.| +.+.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999876654433 5777888888753 1111111 012234 4566
Q ss_pred CCC-CCCCC--cEEEecccccCCCh-------------------------------HHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 245 FFE-SVPEA--DTILMKWVLSSFDD-------------------------------EQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 245 ~~~-~~~~~--D~i~~~~vlh~~~~-------------------------------~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
|.. .+|+. |+|+++.+||.+++ .|...+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 766 67776 99999999997653 123456999999999999999876
Q ss_pred cccCCCCCCc-----hhh-hhhhhhhhhhhhh---------cCCCccCCHHHHHHHHHHcCC-cceeEE
Q 018405 291 VTIPEVPENS-----ATS-REISILDTICLFQ---------VPHGRERTKQEYSELAIKAGF-KGVNYE 343 (356)
Q Consensus 291 ~~~~~~~~~~-----~~~-~~~~~~~~~~~~~---------~~~~~~~t~~e~~~ll~~aGf-~~~~~~ 343 (356)
...++..... ... ....+.++..-.. ..-...++.+|++++++++|. ++.+..
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 5554321000 000 0011111100000 001345689999999999965 666543
No 256
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=98.40 E-value=1.5e-07 Score=87.43 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=72.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------C--CceEEEccCCCCC------CCC-cEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------L--GIEHVGGDFFESV------PEA-DTI 255 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~--~v~~~~~D~~~~~------~~~-D~i 255 (356)
.+..+|||+|||+|.++..+++.. ..+++++|. +.+++.|+++ + +++++.+|+++.. ... |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456899999999999999999853 237999996 8787776542 2 7899999987621 223 999
Q ss_pred Eecccc-----cCCC--hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 256 LMKWVL-----SSFD--DEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 256 ~~~~vl-----h~~~--~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
++.-.. ++.. .+...++++.+.+.|+|||.+++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 984222 1221 13355788999999999999988653
No 257
>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*
Probab=98.37 E-value=3.1e-07 Score=89.43 Aligned_cols=125 Identities=22% Similarity=0.217 Sum_probs=81.7
Q ss_pred hhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcC---CCCCceEEEEcCCccHHHHHHHHhC----CCCeEEEccchHH
Q 018405 156 YDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKG---FEHVKKLVDVGGGLGATLNMIISKY----PRIKGINYDLPYV 228 (356)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vLDiG~G~G~~~~~l~~~~----p~~~~~~~D~~~~ 228 (356)
|+-+++|+-.-..|.+++. +.+.+..++ ..+...|+|||||+|.+....+++. -++++.+++-..+
T Consensus 324 YevFEkD~vKy~~Ye~AI~-------~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~ 396 (637)
T 4gqb_A 324 YEVFEKDPIKYSQYQQAIY-------KCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN 396 (637)
T ss_dssp HHHHTTCHHHHHHHHHHHH-------HHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH
T ss_pred hhhhcCChhhHHHHHHHHH-------HHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH
Confidence 5556677655555555442 333333321 2244679999999999844433322 2346788885334
Q ss_pred HHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEE
Q 018405 229 IKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLL 287 (356)
Q Consensus 229 ~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~li 287 (356)
+..+++. ++|+++.+|+.+ ..|+- |+|++-..-+..-.|-...+|....+.|||||.++
T Consensus 397 A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 397 AVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 4444321 679999999999 77765 99998666555555656678888889999998753
No 258
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=98.36 E-value=7.6e-07 Score=78.20 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---CCceEEEccCCC-CCCC--C-
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---LGIEHVGGDFFE-SVPE--A- 252 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~v~~~~~D~~~-~~~~--~- 252 (356)
...+++.+. ..+. +|||||||+|.++..+++.. .+++++|. +.+++.++++ ++++++.+|+.+ ++++ .
T Consensus 36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 456677666 6677 99999999999999999975 46777775 6666655432 579999999988 6553 2
Q ss_pred cEEEecccccCCChHHHHHHHHH
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKN 275 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~ 275 (356)
|. +..+.-++.+.+-..++|..
T Consensus 112 ~~-iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SL-LVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EE-EEEEECSSCCHHHHHHHHHH
T ss_pred cE-EEecCcccccHHHHHHHhcC
Confidence 55 44556666766555566654
No 259
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Probab=98.36 E-value=2.5e-07 Score=84.21 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=72.1
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCCCCCCCcEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFESVPEADTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~~~~~D~i~~~~vlh~ 263 (356)
.+..+|||+|||+|.++.. ++ ...+++++|. +.+++.++++ ++++++.+|+++.....|+|++.-. +
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP-~- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP-K- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT-T-
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc-H-
Confidence 4678999999999999999 76 5678999996 8887776543 4799999999884333399998422 1
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
....+++.+.+.|+|||++++.+..
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEee
Confidence 1348899999999999999997654
No 260
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Probab=98.34 E-value=6.8e-07 Score=82.80 Aligned_cols=113 Identities=17% Similarity=0.070 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC--------------------------------------Ce
Q 018405 178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR--------------------------------------IK 219 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--------------------------------------~~ 219 (356)
...+..++.... +.+..+|||.+||+|.++...+....+ .+
T Consensus 181 e~lAa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 181 ETLAAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp HHHHHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 344556666555 778899999999999999998775322 57
Q ss_pred EEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCCCC-cEEEecccccC-CC-hHHHHHHHHHHHHhCCC--CCE
Q 018405 220 GINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVPEA-DTILMKWVLSS-FD-DEQSLKLLKNCYKALPD--GGK 285 (356)
Q Consensus 220 ~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~~~-D~i~~~~vlh~-~~-~~~~~~~L~~~~~~L~p--gG~ 285 (356)
++++|. +.+++.|+.+ +++++..+|+.+ +.+.. |+|++.--... +. .++...+.+.+.+.|++ |+.
T Consensus 260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~ 339 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS 339 (385)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence 999996 8888887653 368999999988 44443 99999655432 22 24566777777777776 888
Q ss_pred EEEEec
Q 018405 286 LLNVNV 291 (356)
Q Consensus 286 lii~e~ 291 (356)
++++..
T Consensus 340 ~~iit~ 345 (385)
T 3ldu_A 340 YYLITS 345 (385)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 888754
No 261
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=98.29 E-value=7e-07 Score=83.23 Aligned_cols=97 Identities=19% Similarity=0.119 Sum_probs=73.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-------C-CceEEEccCCCCC------CCC-cEEE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-------L-GIEHVGGDFFESV------PEA-DTIL 256 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~-~v~~~~~D~~~~~------~~~-D~i~ 256 (356)
+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++++ + +++++.+|+++.. +.. |+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 56899999999999999999864 458999996 7777766542 2 6889999987621 223 9999
Q ss_pred ecccc--------cCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 257 MKWVL--------SSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 257 ~~~vl--------h~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+.-.. +... .....++.++.+.|+|||.+++...
T Consensus 299 ~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp ECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 85321 1111 3478999999999999999998653
No 262
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=98.29 E-value=7.3e-07 Score=88.86 Aligned_cols=98 Identities=17% Similarity=0.136 Sum_probs=72.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCC--C-CCC-cEEEecc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFES--V-PEA-DTILMKW 259 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~--~-~~~-D~i~~~~ 259 (356)
+..+|||+|||+|.++..++.... .+++++|. +.+++.++++ ++++++.+|+++. . ... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 568999999999999999887432 36999996 7777777542 3799999998872 2 233 9999843
Q ss_pred ccc--------CCC-hHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 260 VLS--------SFD-DEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 260 vlh--------~~~-~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
.-. .+. ..+...+++.+.++|+|||+|++...
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 211 111 13567899999999999999997543
No 263
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=98.28 E-value=1.1e-06 Score=76.52 Aligned_cols=91 Identities=11% Similarity=0.095 Sum_probs=63.3
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC-CCCC--
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE-SVPE-- 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~~~~-- 251 (356)
....+++.+. ..+..+|||||||+|.++. +. +.+..+++++|. +.+++.++++ ++++++.+|+.+ ++++
T Consensus 9 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~ 85 (252)
T 1qyr_A 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhh
Confidence 3456677666 6777899999999999999 64 445444899996 8888777654 479999999987 5432
Q ss_pred ----CcEEEecccccCCChHHHHHHH
Q 018405 252 ----ADTILMKWVLSSFDDEQSLKLL 273 (356)
Q Consensus 252 ----~D~i~~~~vlh~~~~~~~~~~L 273 (356)
.+.+++.+.-++.+.+-..++|
T Consensus 86 ~~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 86 EKMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred cccCCceEEEECCCCCccHHHHHHHH
Confidence 2345556666666544444444
No 264
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=98.27 E-value=5.3e-07 Score=81.76 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=69.3
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------------CCceEEEccCCCCC------CC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------------LGIEHVGGDFFESV------PE 251 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~~~------~~ 251 (356)
++.+||+||||+|..+..+++..+ .+++.+|+ +.+++.++++ ++++++.+|.++.. ++
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~-~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~ 266 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 266 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCEEEEEECChhHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCC
Confidence 578999999999999999998765 78999996 8888776532 27999999988721 23
Q ss_pred C-cEEEecccc-cC--CCh-HHHHHHHHHH----HHhCCCCCEEEEEe
Q 018405 252 A-DTILMKWVL-SS--FDD-EQSLKLLKNC----YKALPDGGKLLNVN 290 (356)
Q Consensus 252 ~-D~i~~~~vl-h~--~~~-~~~~~~L~~~----~~~L~pgG~lii~e 290 (356)
. |+|++-..- .. -+. --...+++.+ +++|+|||.+++..
T Consensus 267 ~fDvII~D~~d~P~~~~p~~L~t~eFy~~~~~~~~~~L~pgGilv~qs 314 (364)
T 2qfm_A 267 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 314 (364)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CceEEEECCCCcccCcCchhhhHHHHHHHHHHHHHhhCCCCcEEEEEc
Confidence 3 999885432 10 010 0124555555 99999999998853
No 265
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*
Probab=98.27 E-value=3.6e-06 Score=72.81 Aligned_cols=112 Identities=15% Similarity=0.077 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccch-HHHHhCCCC----CCceEEEccCCC-CCCC--
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLP-YVIKNAPSY----LGIEHVGGDFFE-SVPE-- 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~----~~v~~~~~D~~~-~~~~-- 251 (356)
.+.++.+... +++..+|||+|||.|.++...++..+-..+.++|.. ......... .++.....++.. .++.
T Consensus 62 KL~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~ 140 (277)
T 3evf_A 62 KLRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVK 140 (277)
T ss_dssp HHHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCC
Confidence 3455555533 777889999999999999988876554455555542 111111111 134445555433 3333
Q ss_pred CcEEEeccccc---CCChH-HHHHHHHHHHHhCCCC-CEEEEEeccc
Q 018405 252 ADTILMKWVLS---SFDDE-QSLKLLKNCYKALPDG-GKLLNVNVTI 293 (356)
Q Consensus 252 ~D~i~~~~vlh---~~~~~-~~~~~L~~~~~~L~pg-G~lii~e~~~ 293 (356)
.|+|++-...+ ++.|+ ....+|+.+.+.|+|| |.+++ ..+.
T Consensus 141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~ 186 (277)
T 3evf_A 141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA 186 (277)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence 39999976444 22222 2235789999999999 99988 4433
No 266
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=98.26 E-value=3.6e-07 Score=80.69 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCC--CeEEEccc-hHHHHhCCCC--CCceEEEccCCC-CCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPR--IKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE-SVP 250 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~-~~~ 250 (356)
...+++.+. ..+..+|||||||+|.++..+++..+. .+++++|. +.+++.++++ ++++++.+|+.+ +++
T Consensus 31 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 31 IDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 355666666 677889999999999999999998654 45888885 7777777653 689999999987 544
No 267
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A
Probab=98.25 E-value=1.5e-06 Score=84.58 Aligned_cols=125 Identities=18% Similarity=0.115 Sum_probs=78.1
Q ss_pred hhhhccCchHHHHHHHHHhhhhHHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-------------CCCeEEE
Q 018405 156 YDYMGVDSRFNDVFNTGMLGHTCVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-------------PRIKGIN 222 (356)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~ 222 (356)
|+-+.+|+-.-..|.+++. ..+.+...+-.+...|||||||+|.++...+.+. ...++++
T Consensus 379 Ye~fekD~vRy~~Y~~AI~-------~al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyA 451 (745)
T 3ua3_A 379 YNTFEQDQIKYDVYGEAVV-------GALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYI 451 (745)
T ss_dssp HHHHHHCHHHHHHHHHHHH-------HHHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEE
T ss_pred HHHHcCChhhHHHHHHHHH-------HHHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEE
Confidence 4445555554445544442 2222322211235689999999999965432221 2347888
Q ss_pred ccc-hHHHHhCCC------CCCceEEEccCCC-CC------CC-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEE
Q 018405 223 YDL-PYVIKNAPS------YLGIEHVGGDFFE-SV------PE-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLL 287 (356)
Q Consensus 223 ~D~-~~~~~~a~~------~~~v~~~~~D~~~-~~------~~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~li 287 (356)
++- +..+...+. .++|+++.+|+.+ .. ++ .|+|++-..-.....|-....|..+.+.|+|||.++
T Consensus 452 VEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 452 VEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp EECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred EeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 885 433322211 1679999999998 44 44 499998777665555556678888889999999754
No 268
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=98.23 E-value=1.2e-06 Score=77.17 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=74.2
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC-----------CCCceEEEccCCCCC--C-CC-cEE
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS-----------YLGIEHVGGDFFESV--P-EA-DTI 255 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~~v~~~~~D~~~~~--~-~~-D~i 255 (356)
..+.+||-||+|.|..++++++..|..+++.+|+ +.+++.+++ .+|++++.+|...-. . +. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4679999999999999999998777778888886 888876643 279999999998732 2 23 999
Q ss_pred EecccccCCChH--HHHHHHHHHHHhCCCCCEEEEEe
Q 018405 256 LMKWVLSSFDDE--QSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 256 ~~~~vlh~~~~~--~~~~~L~~~~~~L~pgG~lii~e 290 (356)
+.-..=-.-+.+ -...+++.|+++|+|||.++..-
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 864321110100 12578999999999999999864
No 269
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=98.22 E-value=1.2e-06 Score=76.38 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCceEEEccCCC-CCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIEHVGGDFFE-SVP 250 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~D~~~-~~~ 250 (356)
....+++.+. ..+..+|||||||+|.++..++++. .+++++|. +.+++.+++ .++++++.+|+.+ +++
T Consensus 17 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 90 (255)
T 3tqs_A 17 VLQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS 90 (255)
T ss_dssp HHHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred HHHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence 3456777676 7778899999999999999999875 57888886 777776654 3689999999988 553
No 270
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=98.20 E-value=2.4e-06 Score=80.12 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=66.0
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCCCC-CCcEEEecccccC
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFESVP-EADTILMKWVLSS 263 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~~-~~D~i~~~~vlh~ 263 (356)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.|+++ + ++++.+|+.+..+ ..|+|++.-.-..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 36689999999999999999986 458999996 8888877643 3 8999999988433 3499998433221
Q ss_pred CChHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 264 FDDEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 264 ~~~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
.. ..+++.+. .|+|+|.+++.
T Consensus 366 ~~----~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHCCSEEEEEE
T ss_pred hH----HHHHHHHH-hcCCCcEEEEE
Confidence 11 23555554 48999988884
No 271
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=97.99 E-value=5.4e-06 Score=73.90 Aligned_cols=77 Identities=25% Similarity=0.287 Sum_probs=60.5
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC-----CCceEEEccCCC-C--C---
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY-----LGIEHVGGDFFE-S--V--- 249 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~v~~~~~D~~~-~--~--- 249 (356)
..+++.+. ..+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ + .
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 45556665 66778999999999999999999999889999996 8888776542 589999999876 3 1
Q ss_pred --CCCcEEEecc
Q 018405 250 --PEADTILMKW 259 (356)
Q Consensus 250 --~~~D~i~~~~ 259 (356)
...|.|++..
T Consensus 95 g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 95 GIEKVDGILMDL 106 (301)
T ss_dssp TCSCEEEEEEEC
T ss_pred CCCCCCEEEEcC
Confidence 1238888743
No 272
>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}
Probab=97.92 E-value=1.4e-05 Score=69.20 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC----CCCce-EEEc-cCCCCCC-
Q 018405 179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS----YLGIE-HVGG-DFFESVP- 250 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~-~~~~-D~~~~~~- 250 (356)
..+.++.+++. +.+..+|||+|||.|.++...++..+-..++++|+ ......+.. ..++. +... |+..-.+
T Consensus 77 fKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~ 155 (282)
T 3gcz_A 77 AKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVI 155 (282)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCC
Confidence 34566777764 78888999999999999999888776666777875 222112211 01222 2222 3333112
Q ss_pred CCcEEEeccccc----CCChHHHHHHHHHHHHhCCCC--CEEEE
Q 018405 251 EADTILMKWVLS----SFDDEQSLKLLKNCYKALPDG--GKLLN 288 (356)
Q Consensus 251 ~~D~i~~~~vlh----~~~~~~~~~~L~~~~~~L~pg--G~lii 288 (356)
..|+|++-...+ ..+......+|+-+.+.|+|| |.+++
T Consensus 156 ~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~ 199 (282)
T 3gcz_A 156 PGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI 199 (282)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 239999865554 111112335788889999999 99888
No 273
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=97.90 E-value=3.1e-05 Score=69.31 Aligned_cols=102 Identities=14% Similarity=0.104 Sum_probs=68.4
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC------CCceEEEccCCC-CCC----C-CcEEE
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFE-SVP----E-ADTIL 256 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~~----~-~D~i~ 256 (356)
..+..+|||+|||+|..+..+++.. +..+++++|. +..++.++++ .+++++.+|+.+ +.. . .|.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5677899999999999999999875 5578999996 7766655432 578999999876 221 2 39998
Q ss_pred ec------ccccCCCh---------HH-------HHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 257 MK------WVLSSFDD---------EQ-------SLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 257 ~~------~vlh~~~~---------~~-------~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
+- .++...+| ++ ..++|+++.+.++ ||+|+......
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 61 22222111 11 1357888888776 89877755443
No 274
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*
Probab=97.90 E-value=0.00035 Score=62.93 Aligned_cols=145 Identities=15% Similarity=0.146 Sum_probs=102.5
Q ss_pred CCceEEEEcCCccHHHHHHHHh-CCCCeEEEccchHHHHhCC-----------------------------CCCCceEEE
Q 018405 193 HVKKLVDVGGGLGATLNMIISK-YPRIKGINYDLPYVIKNAP-----------------------------SYLGIEHVG 242 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~-~p~~~~~~~D~~~~~~~a~-----------------------------~~~~v~~~~ 242 (356)
+...|+-+|||.=....++... .++++++-+|+|++++.-+ ..++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999998888875 4688999999988765311 135788999
Q ss_pred ccCCC--C---------CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhh
Q 018405 243 GDFFE--S---------VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISIL 309 (356)
Q Consensus 243 ~D~~~--~---------~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~ 309 (356)
.|+.+ . ++.. -++++-.+|.+++.++..++|+.+.+... +|.+++.|.+.+.+ .+...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d-------~fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGD-------RFGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTS-------HHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCC-------HHHHHH
Confidence 99976 1 2222 68899999999999999999999998874 56777889886542 111111
Q ss_pred hhhhhhh-c--CC-CccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 310 DTICLFQ-V--PH-GRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 310 ~~~~~~~-~--~~-~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
--.+-.. . .+ ....+.++..+.|.++||+.+++..+
T Consensus 242 ~~~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1111000 0 01 12357888999999999998876654
No 275
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Probab=97.89 E-value=2.2e-05 Score=78.22 Aligned_cols=113 Identities=15% Similarity=0.014 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC------------------------------------------
Q 018405 178 CVVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY------------------------------------------ 215 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~------------------------------------------ 215 (356)
...+..++.... +.+..+|||.+||+|.++++.+...
T Consensus 176 e~LAa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~ 254 (703)
T 3v97_A 176 ETLAAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE 254 (703)
T ss_dssp HHHHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence 345566666655 7788899999999999998877642
Q ss_pred CCCeEEEccc-hHHHHhCCCC-------CCceEEEccCCC-CCC----CCcEEEecccccC-C-ChHHHHHHHHHHHH--
Q 018405 216 PRIKGINYDL-PYVIKNAPSY-------LGIEHVGGDFFE-SVP----EADTILMKWVLSS-F-DDEQSLKLLKNCYK-- 278 (356)
Q Consensus 216 p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~~----~~D~i~~~~vlh~-~-~~~~~~~~L~~~~~-- 278 (356)
+..+++++|. +.+++.|+.+ +.+++..+|+.+ ..| ..|+|+++--... + .+++...+.+.+.+
T Consensus 255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l 334 (703)
T 3v97_A 255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM 334 (703)
T ss_dssp CCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence 3357999996 8888877653 358999999987 333 2399999733221 1 22344555554444
Q ss_pred -hCCCCCEEEEEec
Q 018405 279 -ALPDGGKLLNVNV 291 (356)
Q Consensus 279 -~L~pgG~lii~e~ 291 (356)
.+.|||+++|+..
T Consensus 335 k~~~~g~~~~ilt~ 348 (703)
T 3v97_A 335 KNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHCTTCEEEEEES
T ss_pred HhhCCCCeEEEEeC
Confidence 4458999999754
No 276
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.88 E-value=2.5e-06 Score=78.67 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=66.8
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC------CCceEEEccCCCC---CC-
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY------LGIEHVGGDFFES---VP- 250 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~---~~- 250 (356)
..+++.+. .. ..+|||+|||+|.++..+++.. .+++++|. +.+++.|+.+ ++++++.+|..+. .+
T Consensus 204 ~~~~~~~~-~~-~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~ 279 (369)
T 3bt7_A 204 EWALDVTK-GS-KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG 279 (369)
T ss_dssp HHHHHHTT-TC-CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSS
T ss_pred HHHHHHhh-cC-CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhh
Confidence 44445444 33 4789999999999999888743 47999996 8887777542 5789999998651 11
Q ss_pred ---------------CCcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 251 ---------------EADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 251 ---------------~~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
..|+|++.- |. ..+.+++.+.|+|+|+++.+..
T Consensus 280 ~~~~~~l~~~~~~~~~fD~Vv~dP-----Pr---~g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 280 VREFNRLQGIDLKSYQCETIFVDP-----PR---SGLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp CCCCTTGGGSCGGGCCEEEEEECC-----CT---TCCCHHHHHHHTTSSEEEEEES
T ss_pred ccccccccccccccCCCCEEEECc-----Cc---cccHHHHHHHHhCCCEEEEEEC
Confidence 238888632 11 1234456666778898888653
No 277
>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}
Probab=97.87 E-value=1.9e-05 Score=68.84 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=67.6
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-h-------HHHHhCCCC-------CCceEEEccCCCC---CC--
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-P-------YVIKNAPSY-------LGIEHVGGDFFES---VP-- 250 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~-------~~~~~a~~~-------~~v~~~~~D~~~~---~~-- 250 (356)
..+..+|||+|||+|..+..++.. +.+++++|. + .+++.++.+ ++++++.+|..+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445679999999999999999985 568999996 7 777776543 4699999998762 33
Q ss_pred -C-CcEEEecccccCCC------------------hHHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 251 -E-ADTILMKWVLSSFD------------------DEQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 251 -~-~D~i~~~~vlh~~~------------------~~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
. .|+|++.-.+++-. +.+...+++.+.++.+ .+++|-.+..
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence 3 39999966554421 1234556666777654 3666655543
No 278
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=97.84 E-value=1.9e-05 Score=68.77 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=62.0
Q ss_pred CCceEEEEcCCccHHHHHHHHh-------CCC-----CeEEEccc-h---HHHHhC-----------C------------
Q 018405 193 HVKKLVDVGGGLGATLNMIISK-------YPR-----IKGINYDL-P---YVIKNA-----------P------------ 233 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-~---~~~~~a-----------~------------ 233 (356)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999988887664 674 57888884 4 222211 0
Q ss_pred --------CCCCceEEEccCCC--C-CCC----C-cEEEecc-cccCCChHHHHHHHHHHHHhCCCCCEEEE
Q 018405 234 --------SYLGIEHVGGDFFE--S-VPE----A-DTILMKW-VLSSFDDEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 234 --------~~~~v~~~~~D~~~--~-~~~----~-D~i~~~~-vlh~~~~~~~~~~L~~~~~~L~pgG~lii 288 (356)
...+++++.+|..+ + .+. . |+|++-. .-..-|+=-...+|+.+++.|+|||.|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 11346788899765 2 222 3 9998732 11101110136899999999999999885
No 279
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=97.79 E-value=1.6e-05 Score=73.27 Aligned_cols=92 Identities=12% Similarity=-0.025 Sum_probs=69.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC---------------------CCceEEEccCCCC--
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY---------------------LGIEHVGGDFFES-- 248 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~v~~~~~D~~~~-- 248 (356)
+..+|||+|||+|..+..++++.+..+++++|. +..++.++++ .+++++.+|....
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 467999999999999999999988888999996 7766655432 1378888998652
Q ss_pred -CCCC-cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 249 -VPEA-DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 249 -~~~~-D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
.+.. |+|++-- .. ....+|..+.+.|+|||.+++..
T Consensus 127 ~~~~~fD~I~lDP-~~-----~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG-----SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS-----CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC-----CHHHHHHHHHHhcCCCCEEEEEe
Confidence 2333 9998532 11 13688999999999999887754
No 280
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=97.73 E-value=2.3e-05 Score=75.80 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=75.9
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC------------------CCeEEEccc-hHHHHhCCCC------
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP------------------RIKGINYDL-PYVIKNAPSY------ 235 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p------------------~~~~~~~D~-~~~~~~a~~~------ 235 (356)
+..+++.+. ..+..+|+|.|||+|.++..+.+... ...++++|+ +.+++.|+.+
T Consensus 158 v~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi 236 (541)
T 2ar0_A 158 IKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 236 (541)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCC
Confidence 344455554 45667999999999999988876532 236899996 7776665421
Q ss_pred CC-----ceEEEccCCC-C-CC--CCcEEEecccccCCCh------------HHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 236 LG-----IEHVGGDFFE-S-VP--EADTILMKWVLSSFDD------------EQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 236 ~~-----v~~~~~D~~~-~-~~--~~D~i~~~~vlh~~~~------------~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
.. +.+..+|.+. + .+ ..|+|+++-.+..... .....++.++.+.|+|||++.++-+
T Consensus 237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 32 7889999887 3 22 2399998654443211 1234789999999999999998743
No 281
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.67 E-value=1.1e-05 Score=90.68 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=64.3
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCC-----CeEEEccc-hHHHHhCCCC-C--CceEEEccCCCC---CCCC-cEEEecc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPR-----IKGINYDL-PYVIKNAPSY-L--GIEHVGGDFFES---VPEA-DTILMKW 259 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~-----~~~~~~D~-~~~~~~a~~~-~--~v~~~~~D~~~~---~~~~-D~i~~~~ 259 (356)
+..+|||||+|+|..+..+++.... .+++..|. +...+.+++. . .++....|..++ .++. |+|++.+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 5679999999999887777766532 35666675 4444444433 1 122211233222 1233 9999999
Q ss_pred cccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHHHHHHHHcCCcc
Q 018405 260 VLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEYSELAIKAGFKG 339 (356)
Q Consensus 260 vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 339 (356)
+||..+ +....|++++++|+|||++++.+...... +.....+.-..........+.++|.++|+++||+.
T Consensus 1320 vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~~~~~~--------~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLG--DPAVAVGNMAATLKEGGFLLLHTLLAGHP--------LGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred cccccc--cHHHHHHHHHHhcCCCcEEEEEecccccc--------ccccccccccccccCCcccCHHHHHHHHHhCCCce
Confidence 999764 36889999999999999999988643110 00000000000000122346789999999999988
Q ss_pred eeEEE
Q 018405 340 VNYEY 344 (356)
Q Consensus 340 ~~~~~ 344 (356)
+....
T Consensus 1390 ~~~~~ 1394 (2512)
T 2vz8_A 1390 VALKR 1394 (2512)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 76543
No 282
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Probab=97.67 E-value=0.00013 Score=66.03 Aligned_cols=95 Identities=11% Similarity=0.035 Sum_probs=64.9
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCC-CCCCC--cEEEecccccCCChH
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFE-SVPEA--DTILMKWVLSSFDDE 267 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~--D~i~~~~vlh~~~~~ 267 (356)
+++..++||+||++|.++..++++ +.+++++|...+.......++|+++.+|.+. ..+.. |+|+|-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 567899999999999999999986 5789999964433333345799999999998 33333 9998866543 13
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEe
Q 018405 268 QSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 268 ~~~~~L~~~~~~L~pgG~lii~e 290 (356)
....++.+.......++.++.+.
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEE
T ss_pred HhHHHHHHHHhccccceEEEEEE
Confidence 34444444444444445554444
No 283
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=97.65 E-value=1.9e-05 Score=72.85 Aligned_cols=92 Identities=13% Similarity=0.003 Sum_probs=69.9
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCC-CeEEEccc-hHHHHhCCCC-------CC-ceEEEccCCC--C--CCCC-cEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPR-IKGINYDL-PYVIKNAPSY-------LG-IEHVGGDFFE--S--VPEA-DTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~-------~~-v~~~~~D~~~--~--~~~~-D~i~~ 257 (356)
+..+|||++||+|.++..++.+.++ .+++++|. +..++.++++ ++ ++++.+|.++ . .+.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 5689999999999999999998766 47899996 7777766543 33 8899999865 2 2223 99988
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
-- +.. ...++..+.++|+|||.|++..
T Consensus 132 DP--~g~----~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--FGT----PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--SSC----CHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CcC----HHHHHHHHHHHhCCCCEEEEEe
Confidence 54 111 2468899999999999887755
No 284
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Probab=97.55 E-value=0.00042 Score=60.43 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=66.3
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccch-HHHHhCCC----CCCc-eEEEc-cCCCCCC-C
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLP-YVIKNAPS----YLGI-EHVGG-DFFESVP-E 251 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~----~~~v-~~~~~-D~~~~~~-~ 251 (356)
.+..+.+. .-+.+..+|||+||++|.++..+++..+-..++++|+. ........ ..++ .+..+ |+..-.+ .
T Consensus 69 KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~ 147 (300)
T 3eld_A 69 KIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEP 147 (300)
T ss_dssp HHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCC
Confidence 34455555 43667899999999999999999987655567777752 11111110 0122 23322 4443222 2
Q ss_pred CcEEEecccccCCCh---H--HHHHHHHHHHHhCCCC-CEEEEE
Q 018405 252 ADTILMKWVLSSFDD---E--QSLKLLKNCYKALPDG-GKLLNV 289 (356)
Q Consensus 252 ~D~i~~~~vlh~~~~---~--~~~~~L~~~~~~L~pg-G~lii~ 289 (356)
.|+|++-..-+ -.. + ....+|+-+.+.|+|| |.+++-
T Consensus 148 ~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K 190 (300)
T 3eld_A 148 SDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK 190 (300)
T ss_dssp CSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred cCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 39999855544 221 1 2346788889999999 998884
No 285
>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}
Probab=97.48 E-value=6.7e-05 Score=72.45 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCC---------------CCeEEEccc-hHHHHhCCCC-------C
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYP---------------RIKGINYDL-PYVIKNAPSY-------L 236 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p---------------~~~~~~~D~-~~~~~~a~~~-------~ 236 (356)
.+..+++.+. . ...+|+|.+||+|.++..+.+..+ ...+.++|+ +.+++.|+.+ .
T Consensus 233 Vv~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~ 310 (544)
T 3khk_A 233 IVTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF 310 (544)
T ss_dssp HHHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 3445555554 3 335999999999999988765432 567899996 7777666432 2
Q ss_pred CceEEEccCCC-C-CCC-C-cEEEeccccc--CCChH-------------------------HHHHHHHHHHHhCCCCCE
Q 018405 237 GIEHVGGDFFE-S-VPE-A-DTILMKWVLS--SFDDE-------------------------QSLKLLKNCYKALPDGGK 285 (356)
Q Consensus 237 ~v~~~~~D~~~-~-~~~-~-D~i~~~~vlh--~~~~~-------------------------~~~~~L~~~~~~L~pgG~ 285 (356)
++.+..+|.+. + .+. . |+|+++--.. .|..+ ....+++.+.+.|+|||+
T Consensus 311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr 390 (544)
T 3khk_A 311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS 390 (544)
T ss_dssp BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence 34447888776 3 222 2 9999854333 12211 112689999999999999
Q ss_pred EEEEe
Q 018405 286 LLNVN 290 (356)
Q Consensus 286 lii~e 290 (356)
+.++-
T Consensus 391 ~aiVl 395 (544)
T 3khk_A 391 MALLL 395 (544)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88864
No 286
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=97.42 E-value=0.00036 Score=69.25 Aligned_cols=100 Identities=12% Similarity=0.075 Sum_probs=66.6
Q ss_pred CCCceEEEEcCCccHHHHHHHHhCC---CCeEEEccc-hHHHHhC--C----C----C--CCceEEEccCCCCC--C-C-
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKYP---RIKGINYDL-PYVIKNA--P----S----Y--LGIEHVGGDFFESV--P-E- 251 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a--~----~----~--~~v~~~~~D~~~~~--~-~- 251 (356)
.+..+|+|.|||+|.++..+++..+ ..++.++|+ +.+++.| + . . +...+...|+..+. + .
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 3568999999999999999998876 357889996 6665555 1 1 1 22355556666521 2 2
Q ss_pred CcEEEecccccC-CC-hHH-------------------------HHHHHHHHHHhCCCCCEEEEEec
Q 018405 252 ADTILMKWVLSS-FD-DEQ-------------------------SLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 252 ~D~i~~~~vlh~-~~-~~~-------------------------~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
.|+|+++--.-. +. +.. ...+++++.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 299998544411 11 111 23478889999999999998654
No 287
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=97.40 E-value=0.0005 Score=57.76 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHh---CCC--CCCceEEEc-cCCC-CCC
Q 018405 179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKN---APS--YLGIEHVGG-DFFE-SVP 250 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~~--~~~v~~~~~-D~~~-~~~ 250 (356)
..+..+.+.+. +++..+|||+||++|.++...+....-.++.++|. +.-.+. .+. .+.|+|..+ |++. +..
T Consensus 65 ~KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~ 143 (267)
T 3p8z_A 65 AKLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPE 143 (267)
T ss_dssp HHHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCc
Confidence 34566777774 78888999999999999998887765557899996 222221 111 267999999 9776 322
Q ss_pred CCcEEEecccccCCC---hH-HHHHHHHHHHHhCCCCCEEEEEecccC
Q 018405 251 EADTILMKWVLSSFD---DE-QSLKLLKNCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 251 ~~D~i~~~~vlh~~~---~~-~~~~~L~~~~~~L~pgG~lii~e~~~~ 294 (356)
..|+|+|--.=-.-+ ++ ...++|.-+.+.|++ |-+++ -.+.+
T Consensus 144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~p 189 (267)
T 3p8z_A 144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNP 189 (267)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCC
T ss_pred cccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccC
Confidence 249998832221111 11 123577777899998 66666 33333
No 288
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Probab=97.38 E-value=0.00049 Score=60.44 Aligned_cols=95 Identities=17% Similarity=0.106 Sum_probs=66.5
Q ss_pred CCCceEEEEcCCccHHHHHHHHhC-----CCCeEEEccc-hH--------------------------HHHhCC------
Q 018405 192 EHVKKLVDVGGGLGATLNMIISKY-----PRIKGINYDL-PY--------------------------VIKNAP------ 233 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~~~~-----p~~~~~~~D~-~~--------------------------~~~~a~------ 233 (356)
..+++|||||+..|..+..++... ++.+++++|. +. ..+.++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 457899999999999998887654 4778888882 11 011111
Q ss_pred -C-CCCceEEEccCCCC---CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 234 -S-YLGIEHVGGDFFES---VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 234 -~-~~~v~~~~~D~~~~---~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
- .++|+++.||+.+. .+.. |+|++=.-.+ +.....|+.+...|+|||.+++-+
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 1 26899999998762 2222 7877754322 346789999999999999888733
No 289
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=97.34 E-value=0.00013 Score=66.33 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=68.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------------CCceEEEccCCCC------CCC
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------------LGIEHVGGDFFES------VPE 251 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------------~~v~~~~~D~~~~------~~~ 251 (356)
++.+||-||+|.|..++++++. |..+++.+|+ |.+++.+++. +|++++.+|...- ...
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 5689999999999999999975 5568888886 8888766431 4688999997641 112
Q ss_pred -CcEEEecccccC-------CC-hHHHHHHHHHHHHhCCCCCEEEEE
Q 018405 252 -ADTILMKWVLSS-------FD-DEQSLKLLKNCYKALPDGGKLLNV 289 (356)
Q Consensus 252 -~D~i~~~~vlh~-------~~-~~~~~~~L~~~~~~L~pgG~lii~ 289 (356)
.|+|+.-..=.. .. ..-...+++.++++|+|||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 299987422110 00 011357889999999999998874
No 290
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=97.34 E-value=6.7e-05 Score=65.22 Aligned_cols=76 Identities=11% Similarity=0.160 Sum_probs=53.4
Q ss_pred HHHhcCCCCC--ceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH-------HHhCCC-------C-CCceEEEccCC
Q 018405 185 LESYKGFEHV--KKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV-------IKNAPS-------Y-LGIEHVGGDFF 246 (356)
Q Consensus 185 ~~~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~-------~~~a~~-------~-~~v~~~~~D~~ 246 (356)
.+.+. +++. .+|||+|||+|..+..++.+ +.+++++|. +.+ ++.++. . .+++++.+|..
T Consensus 79 ~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~ 155 (258)
T 2oyr_A 79 AKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL 155 (258)
T ss_dssp HHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred HHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence 33343 5555 89999999999999999987 457999996 543 333321 1 46899999986
Q ss_pred C---CCCCC-cEEEecccccC
Q 018405 247 E---SVPEA-DTILMKWVLSS 263 (356)
Q Consensus 247 ~---~~~~~-D~i~~~~vlh~ 263 (356)
+ ..++. |+|++--..++
T Consensus 156 ~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 156 TALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHhCcccCCEEEEcCCCCC
Confidence 5 23333 99999766654
No 291
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=97.33 E-value=0.001 Score=56.78 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHh--CCCCe--EEEccchHHHHhCCCC-CCc---eEEEc-cCCCCCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISK--YPRIK--GINYDLPYVIKNAPSY-LGI---EHVGG-DFFESVP 250 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~--~p~~~--~~~~D~~~~~~~a~~~-~~v---~~~~~-D~~~~~~ 250 (356)
.+.+|-++. -+++..+|||+||+.|.++...++. ...+. ++++|. . +...... .++ .+..+ |+++..+
T Consensus 61 KL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~~~ 137 (269)
T 2px2_A 61 KLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYKPS 137 (269)
T ss_dssp HHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGSCC
T ss_pred HHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCCCC
Confidence 345666665 3788999999999999999988875 21112 234442 1 1111111 355 44447 9988434
Q ss_pred C-CcEEEecc---cccCCChH-HHHHHHHHHHHhCCCCC-EEEE
Q 018405 251 E-ADTILMKW---VLSSFDDE-QSLKLLKNCYKALPDGG-KLLN 288 (356)
Q Consensus 251 ~-~D~i~~~~---vlh~~~~~-~~~~~L~~~~~~L~pgG-~lii 288 (356)
. .|+|+|-. +-+...|. ....+|.-+.+.|+||| .+++
T Consensus 138 ~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv 181 (269)
T 2px2_A 138 EISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI 181 (269)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 3 49998732 21111121 12246777889999999 7777
No 292
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=97.31 E-value=0.00068 Score=65.31 Aligned_cols=99 Identities=19% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCceEEEEcCCccHHHHHHHHhC---CCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCC-CCC---C--CcE
Q 018405 193 HVKKLVDVGGGLGATLNMIISKY---PRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFE-SVP---E--ADT 254 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~-~~~---~--~D~ 254 (356)
+..+|+|.+||+|.++..+.+.. +...+.++|+ +.+.+.|+.+ +++.+..+|.+. ++| . .|+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999988875 3568899996 7766666432 356789999887 433 2 299
Q ss_pred EEeccccc-CCCh--------------------HHHHHHHHHHHHhCC-CCCEEEEEec
Q 018405 255 ILMKWVLS-SFDD--------------------EQSLKLLKNCYKALP-DGGKLLNVNV 291 (356)
Q Consensus 255 i~~~~vlh-~~~~--------------------~~~~~~L~~~~~~L~-pgG~lii~e~ 291 (356)
|+++--.. .|.. ..-..++.++.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 99752221 1110 001358999999999 9999988653
No 293
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=97.28 E-value=0.00034 Score=52.17 Aligned_cols=64 Identities=16% Similarity=0.250 Sum_probs=52.6
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhC--CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhhCC
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQI--PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVRNN 111 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~--~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~~~ 111 (356)
+..|++.|.+. |+.|+.+||+.+ +++ +. .+++.|+.|...|+|+.. +.+.|++|+.+..+....
T Consensus 15 d~~IL~~L~~~---g~~s~~eLA~~l~~giS------~~-aVs~rL~~Le~~GLV~~~---~rg~Y~LT~~G~~~l~~~ 80 (111)
T 3b73_A 15 DDRILEIIHEE---GNGSPKELEDRDEIRIS------KS-SVSRRLKKLADHDLLQPL---ANGVYVITEEGEAYLNGE 80 (111)
T ss_dssp HHHHHHHHHHH---SCBCHHHHHTSTTCCSC------HH-HHHHHHHHHHHTTSEEEC---STTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCEEec---CCceEEECchHHHHHHHH
Confidence 45577888764 599999999999 997 77 999999999999999953 346999999998555443
No 294
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.25 E-value=0.00095 Score=55.49 Aligned_cols=88 Identities=10% Similarity=0.030 Sum_probs=59.6
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC---------CCCceEEEccCCCC--------------
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS---------YLGIEHVGGDFFES-------------- 248 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~-------------- 248 (356)
+..+||||||| ..+..+++ .++.+++.+|. +...+.+++ .++|+++.+|..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 56899999984 66666666 45778888884 666555542 34689999985431
Q ss_pred ----------CC--C-CcEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 249 ----------VP--E-ADTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 249 ----------~~--~-~D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
.+ . .|+|++-.- .....+..+.+.|+|||.|++-+
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEEeC
Confidence 12 2 299998542 12355666778999999885533
No 295
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=97.24 E-value=0.0015 Score=56.69 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHH-HHh---CCCC--CCceEEEc-cCCC-CCC
Q 018405 179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYV-IKN---APSY--LGIEHVGG-DFFE-SVP 250 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~-~~~---a~~~--~~v~~~~~-D~~~-~~~ 250 (356)
..+..+.+.+. +++..+|||+||++|.++...+....-.++.++|.... .+. .++. .-|.+..+ |++. +..
T Consensus 81 ~KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~ 159 (321)
T 3lkz_A 81 AKLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSE 159 (321)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCC
Confidence 34556666655 77888999999999999997777655557899996221 111 1111 34788888 8766 322
Q ss_pred CCcEEEecccccCCChHH-----HHHHHHHHHHhCCCC-CEEEE
Q 018405 251 EADTILMKWVLSSFDDEQ-----SLKLLKNCYKALPDG-GKLLN 288 (356)
Q Consensus 251 ~~D~i~~~~vlh~~~~~~-----~~~~L~~~~~~L~pg-G~lii 288 (356)
..|+|+|--. .--+.+. ..++|.-+.+.|++| |-+++
T Consensus 160 ~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 160 CCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 3499887444 3223221 234777778999988 77766
No 296
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=97.23 E-value=0.00037 Score=54.20 Aligned_cols=84 Identities=18% Similarity=0.094 Sum_probs=58.1
Q ss_pred CCceEEEEcCCcc-HHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCC----CCcEEEecccccCCCh
Q 018405 193 HVKKLVDVGGGLG-ATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVP----EADTILMKWVLSSFDD 266 (356)
Q Consensus 193 ~~~~vLDiG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~----~~D~i~~~~vlh~~~~ 266 (356)
...+|||||||.| ..+..|++. .+..++++|+ |.. +.++..|++++.. .+|+|...+- |
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~A---------v~~v~dDiF~P~~~~Y~~~DLIYsirP----P- 99 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSH---------GGIVRDDITSPRMEIYRGAALIYSIRP----P- 99 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSS---------TTEECCCSSSCCHHHHTTEEEEEEESC----C-
T ss_pred CCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCccc---------cceEEccCCCCcccccCCcCEEEEcCC----C-
Confidence 5689999999999 588877764 4678999995 533 2389999999655 3399977554 2
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccc
Q 018405 267 EQSLKLLKNCYKALPDGGKLLNVNVTI 293 (356)
Q Consensus 267 ~~~~~~L~~~~~~L~pgG~lii~e~~~ 293 (356)
.+....+.++.+... .-++|.-...
T Consensus 100 ~El~~~i~~lA~~v~--adliI~pL~~ 124 (153)
T 2k4m_A 100 AEIHSSLMRVADAVG--ARLIIKPLTG 124 (153)
T ss_dssp TTTHHHHHHHHHHHT--CEEEEECBTT
T ss_pred HHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 335556666666544 6777754443
No 297
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*
Probab=97.23 E-value=0.0024 Score=57.02 Aligned_cols=144 Identities=11% Similarity=0.026 Sum_probs=93.8
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCC---------CCCceEEEccCCCCC---------C-CC-
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPS---------YLGIEHVGGDFFESV---------P-EA- 252 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~---------~~~v~~~~~D~~~~~---------~-~~- 252 (356)
+...||++|||-=....++.. .++++++-+|.|.+++..++ .++..++..|+.+.+ . ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456799999998888766652 12588999999987665432 256788999987621 1 11
Q ss_pred cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhh-hhh-hhh-----hcCCCcc-CC
Q 018405 253 DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISIL-DTI-CLF-----QVPHGRE-RT 324 (356)
Q Consensus 253 D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~-~t 324 (356)
-++++-.+||++++++...+|+.+.+.+.||+.+++ |.+.++.. .......... ... ... ....... ++
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 257 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD--EWREQMQLRFRRVSDALGFEQAVDVQELIYHDE 257 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS--HHHHHHHHHHHHHHC-----------CCTTCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc--chhHHHHHHHHHHHHHcCCcCCCCccccccCCC
Confidence 688899999999999999999999999988887666 55544321 0000000000 000 000 0001112 26
Q ss_pred -HHHHHHHHHHcCCcce
Q 018405 325 -KQEYSELAIKAGFKGV 340 (356)
Q Consensus 325 -~~e~~~ll~~aGf~~~ 340 (356)
.++..++|.+.||+.+
T Consensus 258 ~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 258 NRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TCCCHHHHHTTTTEEEE
T ss_pred ChHHHHHHHHHCcCccc
Confidence 7899999999999987
No 298
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.05 E-value=0.00063 Score=49.49 Aligned_cols=62 Identities=18% Similarity=0.144 Sum_probs=47.2
Q ss_pred HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
-.++.|+..|... ++.|..|||+.+|++ +. .+.+.|+.|...|++..........|++++.+
T Consensus 24 ~~~~~il~~l~~~---~~~s~~ela~~l~is------~~-tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~ 85 (99)
T 3cuo_A 24 PKRLLILCMLSGS---PGTSAGELTRITGLS------AS-ATSQHLARMRDEGLIDSQRDAQRILYSIKNEA 85 (99)
T ss_dssp HHHHHHHHHHTTC---CSEEHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred hHHHHHHHHHHhC---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 3456677777664 489999999999997 77 89999999999999996532222457776554
No 299
>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}
Probab=97.02 E-value=0.00036 Score=64.61 Aligned_cols=63 Identities=29% Similarity=0.385 Sum_probs=49.4
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--------CCceEEEccCCCC--C-C--CCcEEEe
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--------LGIEHVGGDFFES--V-P--EADTILM 257 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--------~~v~~~~~D~~~~--~-~--~~D~i~~ 257 (356)
+..+|||+|||+|..+..+++. ..+++++|. +.+++.++.+ ++++++.+|+.+. . + ..|+|++
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 4689999999999999998876 468999996 7777766532 4689999999873 2 1 3499988
No 300
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=96.99 E-value=0.00093 Score=46.71 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=47.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
.+..|++.|.+.+++.+.|+.+||+++|++ .. -+++.|..|...|+|...+ ..++.|.+.+...
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs------r~-tV~~~L~~Le~~G~I~~~g-~~~~~W~i~~~~~ 74 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTP------KK-EINRVLYSLAKKGKLQKEA-GTPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEES-SSSCEEEEC----
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEecC-CCCCeeEEeCcHH
Confidence 345577788776444479999999999997 67 8999999999999999654 2347888876554
No 301
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.93 E-value=0.00052 Score=46.25 Aligned_cols=55 Identities=16% Similarity=0.372 Sum_probs=43.7
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
+..|++.|.+.+ .+.|..|||+.+|++ .. .+.+.+..|...|+|.. +..+.|+++
T Consensus 12 ~~~IL~~L~~~~--~~~s~~eLA~~lgls------r~-tv~~~l~~L~~~G~I~~---~~~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDDG--GPVAIFQLVKKCQVP------KK-TLNQVLYRLKKEDRVSS---PSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHHC--SCEEHHHHHHHHCSC------HH-HHHHHHHHHHHTTSEEE---EETTEEEEC
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEec---CCCceEeeC
Confidence 445777886642 489999999999997 67 89999999999999874 224778764
No 302
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=96.92 E-value=0.001 Score=57.89 Aligned_cols=64 Identities=20% Similarity=0.227 Sum_probs=51.7
Q ss_pred HHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC
Q 018405 181 MEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE 247 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~ 247 (356)
...+++.+. .++...+||.+||.|.++..++++ +.+++++|. |.+++.+++. +|++++.+|+.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456777776 778899999999999999999998 679999996 7777655321 588899888865
No 303
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.88 E-value=0.0083 Score=59.81 Aligned_cols=147 Identities=15% Similarity=0.096 Sum_probs=102.5
Q ss_pred CCceEEEEcCCccHHHHHHHHhCC--------CCeEEEccchHHHHhCCC------------------------------
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYP--------RIKGINYDLPYVIKNAPS------------------------------ 234 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~~~~a~~------------------------------ 234 (356)
+...||-+|||.=....+|....| +++++-+|+|++++.-++
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467899999999999999988755 788999999887543211
Q ss_pred CCCceEEEccCCCC-----------C-CCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecccCCCCCCc
Q 018405 235 YLGIEHVGGDFFES-----------V-PEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVTIPEVPENS 300 (356)
Q Consensus 235 ~~~v~~~~~D~~~~-----------~-~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~ 300 (356)
.++..++..|+.+. + ... -++++-.+|.+++.++..++|+.+.+ + |+|.+++.|.+.+......
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d~ 264 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFEP 264 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTSH
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCCh
Confidence 03678899999872 1 222 67888999999999999999999985 4 6889999998876432221
Q ss_pred hhhhhhhhhhhhhhhh---cC-CCccCCHHHHHHHHHHcCCcceeEEEc
Q 018405 301 ATSREISILDTICLFQ---VP-HGRERTKQEYSELAIKAGFKGVNYEYG 345 (356)
Q Consensus 301 ~~~~~~~~~~~~~~~~---~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~ 345 (356)
+...+--.+... .. -....+.++..+.|.+.||+.+....+
T Consensus 265 ----f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 265 ----FSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp ----HHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred ----HHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 111111111000 00 013357999999999999987766543
No 304
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.88 E-value=0.00099 Score=46.20 Aligned_cols=61 Identities=11% Similarity=0.122 Sum_probs=48.4
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
+-.|++.|... ||.|+.+||+.+|++ ... .+++.|..|...|+|.+.+.. ...|.+|+.+.
T Consensus 13 ~~~IL~~Lk~~---g~~ta~eiA~~Lgit-----~~~-aVr~hL~~Le~eGlV~~~~~g-RP~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV---SDSSALNLAKNIGLT-----KAR-DINAVLIDMERQGDVYRQGTT-PPIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT---CCEEHHHHHHHHCGG-----GHH-HHHHHHHHHHHTTSEEEECSS-SCEEEECHHHH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHcCCC-----cHH-HHHHHHHHHHHCCCEEecCCC-CCCeEeCHhHH
Confidence 44567778776 699999999999996 123 789999999999999865332 34899998875
No 305
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.87 E-value=0.00089 Score=48.59 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=49.6
Q ss_pred HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
++..-.++.|++.| . ++.|+.|||+.+|++ +. .+.+.|+.|...|++.. .. +.|++++.+.
T Consensus 27 ~l~~~~r~~Il~~L-~----~~~~~~eLa~~l~is------~~-tv~~~L~~L~~~Glv~~---~~-g~y~l~~~g~ 87 (96)
T 1y0u_A 27 AVTNPVRRKILRML-D----KGRSEEEIMQTLSLS------KK-QLDYHLKVLEAGFCIER---VG-ERWVVTDAGK 87 (96)
T ss_dssp HHSCHHHHHHHHHH-H----TTCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---ET-TEEEECTTTC
T ss_pred HhCCHHHHHHHHHH-c----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE---EC-CEEEECCCch
Confidence 34444566788888 5 589999999999997 77 89999999999999995 33 6899987664
No 306
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=96.79 E-value=0.00073 Score=49.43 Aligned_cols=87 Identities=18% Similarity=0.208 Sum_probs=51.7
Q ss_pred CCccccchHHhHHHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHH
Q 018405 1 MASMADQEEETNNFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRL 80 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~ 80 (356)
||.-+++..+....+.+.+.. .+|.--.++.|+..|... |+.|+.|||+.+|++ +. .+.+.|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~------~aL~~~~Rl~IL~~l~~~---~~~~~~ela~~l~is------~s-tvs~hL~~ 64 (99)
T 2zkz_A 1 MTVFVDHKIEYMSLEDDAELL------KTMAHPMRLKIVNELYKH---KALNVTQIIQILKLP------QS-TVSQHLCK 64 (99)
T ss_dssp ----------CCCHHHHHHHH------HHHCSHHHHHHHHHHHHH---SCEEHHHHHHHHTCC------HH-HHHHHHHH
T ss_pred CeeeeccccchhhHHHHHHHH------HHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCcC------HH-HHHHHHHH
Confidence 555666666665555555544 333334556677444333 589999999999997 77 89999999
Q ss_pred HhhCCcccceeeCCCcceecchhc
Q 018405 81 LVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 81 l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
|... ++........-.|++++.+
T Consensus 65 L~~~-lv~~~~~gr~~~y~l~~~~ 87 (99)
T 2zkz_A 65 MRGK-VLKRNRQGLEIYYSINNPK 87 (99)
T ss_dssp HBTT-TBEEEEETTEEEEECCCHH
T ss_pred HHHH-hhhheEeCcEEEEEEChHH
Confidence 9999 9886432222357766543
No 307
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.76 E-value=0.00077 Score=50.15 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=43.9
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
.++.|+..|.. ++.|+.|||+.+|++ +. .+.+.|+.|...|++..........|++++.
T Consensus 26 ~r~~IL~~L~~----~~~s~~eLa~~lgis------~s-tvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~ 84 (108)
T 2kko_A 26 RRLQILDLLAQ----GERAVEAIATATGMN------LT-TASANLQALKSGGLVEARREGTRQYYRIAGE 84 (108)
T ss_dssp TTHHHHHHHTT----CCEEHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEEEEETTEEEEEESCH
T ss_pred HHHHHHHHHHc----CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 34556666765 489999999999997 77 8999999999999999653221234666543
No 308
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=96.75 E-value=0.00098 Score=46.21 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=47.4
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
.+..|++.|.+.+.+.+.|+.|||+++|++ .. .+.+.|..|...|+|...+ ..++.|.+++
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs------~~-tV~~~L~~L~~~G~I~~~g-~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGTP------KK-EINRVLYSLAKKGKLQKEA-GTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCCC------HH-HHHHHHHHHHHHTSEEEEC-SSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEecC-CCCCceEecC
Confidence 345677888776333379999999999997 67 8999999999999998654 2347777654
No 309
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.71 E-value=0.002 Score=47.62 Aligned_cols=60 Identities=23% Similarity=0.331 Sum_probs=44.9
Q ss_pred HHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 32 AVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
--.++.|+..|.. ++.|+.|||+.+|++ +. .+.+.|+.|...|++..........|++++
T Consensus 25 ~~~r~~IL~~L~~----~~~~~~ela~~l~is------~s-tvs~~L~~L~~~Glv~~~~~gr~~~y~l~~ 84 (106)
T 1r1u_A 25 DYNRIRIMELLSV----SEASVGHISHQLNLS------QS-NVSHQLKLLKSVHLVKAKRQGQSMIYSLDD 84 (106)
T ss_dssp SHHHHHHHHHHHH----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred CHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEECh
Confidence 3345567777775 489999999999997 77 899999999999999965321113466554
No 310
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.66 E-value=0.0015 Score=47.87 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=44.6
Q ss_pred HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
-.++.|+..|.+ |+.|+.|||+.+|++ +. .+.+.|+.|...|++..........|++++
T Consensus 23 ~~r~~Il~~L~~----~~~~~~ela~~l~is------~~-tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (102)
T 3pqk_A 23 PVRLMLVCTLVE----GEFSVGELEQQIGIG------QP-TLSQQLGVLRESGIVETRRNIKQIFYRLTE 81 (102)
T ss_dssp HHHHHHHHHHHT----CCBCHHHHHHHHTCC------TT-HHHHHHHHHHHTTSEEEECSSSCCEEEECS
T ss_pred HHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEECc
Confidence 345556677765 589999999999997 66 899999999999999865322224566664
No 311
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.60 E-value=0.0015 Score=49.43 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=50.2
Q ss_pred HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
.+|.--.++.|+..|.+ |+.|+.|||+.+|++ +. .+.+.|+.|...|+|..........|++++.+
T Consensus 13 ~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~is------~~-tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~ 78 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSR----GPATVSELAKPFDMA------LP-SFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEP 78 (118)
T ss_dssp HHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECSHH
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCeEEEecCCEEEEEECHHH
Confidence 33444466677777775 589999999999997 77 89999999999999986533223467777654
No 312
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.56 E-value=0.0013 Score=47.89 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 30 MHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 30 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
|.--.++.|+..|.+ ++.|+.|||+.+|++ +. .+.+.|+.|...|++..........|++++.
T Consensus 20 l~~~~r~~Il~~L~~----~~~~~~ela~~l~is------~~-tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~ 82 (98)
T 3jth_A 20 MANERRLQILCMLHN----QELSVGELCAKLQLS------QS-ALSQHLAWLRRDGLVTTRKEAQTVYYTLKSE 82 (98)
T ss_dssp HCSHHHHHHHHHTTT----SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCTTCCEEEECCH
T ss_pred cCCHHHHHHHHHHhc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEECHH
Confidence 333456667777776 489999999999997 77 8999999999999999653222245766643
No 313
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.56 E-value=0.003 Score=47.17 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=55.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCC--HHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLS--VAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t--~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+...+.+.+.+.|...+| ..|.. |+.+ +.||++.+ |++ +. .+.+.|+.|...|+|++
T Consensus 16 ~~~~~l~~l~~~wrl~IL---------~~L~~----g~~~~~~~eL~~~l~gis------~~-~ls~~L~~Le~~GlV~r 75 (111)
T 3df8_A 16 PSESVLHLLGKKYTMLII---------SVLGN----GSTRQNFNDIRSSIPGIS------ST-ILSRRIKDLIDSGLVER 75 (111)
T ss_dssp TTSSTHHHHHSTTHHHHH---------HHHTS----SSSCBCHHHHHHTSTTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCccHHHHH---------HHHhc----CCCCCCHHHHHHHccCCC------HH-HHHHHHHHHHHCCCEEE
Confidence 444555566666655444 34444 4777 99999999 998 77 99999999999999997
Q ss_pred eeeCCCcceecchhchHhh
Q 018405 90 SFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 90 ~~~~~~~~y~~t~~~~~l~ 108 (356)
... ....|++|+.|..+.
T Consensus 76 ~~~-r~~~y~LT~~G~~l~ 93 (111)
T 3df8_A 76 RSG-QITTYALTEKGMNVR 93 (111)
T ss_dssp EES-SSEEEEECHHHHHHH
T ss_pred eec-CcEEEEECccHHHHH
Confidence 532 346799999987554
No 314
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.48 E-value=0.002 Score=46.84 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=51.8
Q ss_pred HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeC--C-Ccceecchhc
Q 018405 28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD--G-QRLYSLASVA 104 (356)
Q Consensus 28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~--~-~~~y~~t~~~ 104 (356)
.++..-.++.|+..|... ++.|..+||+.+|++ +. .+.+.|+.|...|++...... + ...|++|+.+
T Consensus 11 ~~l~~~~~~~iL~~L~~~---~~~~~~ela~~l~is------~~-tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g 80 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR---RKAPFSQIQKVLDLT------PG-NLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFG 80 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH---SEEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred cccCChHHHHHHHHHHhc---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHH
Confidence 345555677788877643 489999999999997 77 899999999999999964311 1 2468888877
Q ss_pred h
Q 018405 105 K 105 (356)
Q Consensus 105 ~ 105 (356)
.
T Consensus 81 ~ 81 (100)
T 1ub9_A 81 M 81 (100)
T ss_dssp H
T ss_pred H
Confidence 5
No 315
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.46 E-value=0.0024 Score=48.54 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=48.7
Q ss_pred HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
.+|.--.++.|+..|... ++.|+.|||+.+|++ +. .+.+.|+.|...|++..........|++++.
T Consensus 37 ~al~~~~rl~IL~~L~~~---~~~s~~eLa~~l~is------~s-tvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~ 102 (122)
T 1u2w_A 37 KAIADENRAKITYALCQD---EELCVCDIANILGVT------IA-NASHHLRTLYKQGVVNFRKEGKLALYSLGDE 102 (122)
T ss_dssp HHHHSHHHHHHHHHHHHS---SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEC----CCEEEESCH
T ss_pred HHhCCHHHHHHHHHHHHC---CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEECCEEEEEECHH
Confidence 344444677888988754 589999999999997 77 8999999999999998542111235776643
No 316
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.34 E-value=0.0033 Score=46.92 Aligned_cols=61 Identities=11% Similarity=0.226 Sum_probs=46.1
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
.++.|+..|.. ++.|+.|||+.+|++ +. .+.+.|+.|...|++..........|.+|+.+.
T Consensus 22 ~r~~IL~~L~~----~~~~~~ela~~l~is------~~-tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 22 TRWEILTELGR----ADQSASSLATRLPVS------RQ-AIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHH----SCBCHHHHHHHSSSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred HHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 34556677744 589999999999997 77 899999999999999964321123477776653
No 317
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=96.31 E-value=0.0047 Score=56.15 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=71.0
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC------------CCCceEEEccCCC-C--CCCC-c
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS------------YLGIEHVGGDFFE-S--VPEA-D 253 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~v~~~~~D~~~-~--~~~~-D 253 (356)
..++.+|||+++|.|.=+.+++...++-.++.+|. +.-++..++ ..++.+...|... + .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 66789999999999999999998877667888885 433322211 1467788888765 2 2333 8
Q ss_pred EEEe----cc----c-------ccCCChHH-------HHHHHHHHHHhCCCCCEEEEEecccCC
Q 018405 254 TILM----KW----V-------LSSFDDEQ-------SLKLLKNCYKALPDGGKLLNVNVTIPE 295 (356)
Q Consensus 254 ~i~~----~~----v-------lh~~~~~~-------~~~~L~~~~~~L~pgG~lii~e~~~~~ 295 (356)
.|++ +. + ...+..++ -.++|+++.++|||||+|+-.......
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~ 289 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSH 289 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCT
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCch
Confidence 8875 22 1 11222222 247899999999999998877655543
No 318
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.27 E-value=0.0031 Score=49.91 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 27 PAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 27 ~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
..+|.--.++.|+..|.. ++.|+.|||+.+|++ +. .+.+.|+.|...|+|..........|++|+.+.
T Consensus 52 l~aL~~p~R~~IL~~L~~----~~~t~~eLa~~lgls------~s-tvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 52 LEVAAEPTRRRLVQLLTS----GEQTVNNLAAHFPAS------RS-AISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL 119 (151)
T ss_dssp HHHHTSHHHHHHHHHGGG----CCEEHHHHHTTSSSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence 355556678888888885 589999999999997 77 899999999999999965322224688877654
No 319
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=96.27 E-value=0.0069 Score=54.02 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-CCCeEEEccc-hHHHHhCCCC--CCceEEEccCCC
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-PRIKGINYDL-PYVIKNAPSY--LGIEHVGGDFFE 247 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--~~v~~~~~D~~~ 247 (356)
...++++.+. .++...+||..+|.|..+..++++. |+.+++++|. |.+++.+++. +|++++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3467777776 7788999999999999999999985 7889999996 8888877432 466677666543
No 320
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.23 E-value=0.0052 Score=44.64 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=48.6
Q ss_pred cCchhHHHhCCCCCCCCHHHH----HHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 36 LDVFEIISKAGAGAKLSVAEI----VAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~el----a~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
+.++..|... ++.|..+| |+.++++ +. .+.+.++.|...|++.+........|.+|+.|..+.
T Consensus 11 ~~iL~~l~~~---~~~~~~el~~~la~~l~is------~~-tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~ 77 (99)
T 1tbx_A 11 AIVLAYLYDN---EGIATYDLYKKVNAEFPMS------TA-TFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFA 77 (99)
T ss_dssp HHHHHHHTTC---TTCBHHHHHHHHHTTSCCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHc---CCcCHHHHHHHHHHHcCCC------HH-HHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHH
Confidence 3455666554 58999999 9999997 77 899999999999999975433335688888887544
No 321
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.16 E-value=0.0034 Score=47.42 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=45.4
Q ss_pred HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
-.++.|+..|.. ++.++.|||+.+|++ +. .+.+.|+.|...|++..........|++++.
T Consensus 21 ~~r~~IL~~L~~----~~~~~~eLa~~lgis------~s-tvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~ 80 (118)
T 2jsc_A 21 PTRCRILVALLD----GVCYPGQLAAHLGLT------RS-NVSNHLSCLRGCGLVVATYEGRQVRYALADS 80 (118)
T ss_dssp HHHHHHHHHHHT----TCCSTTTHHHHHSSC------HH-HHHHHHHHHTTTTSEEEEECSSSEEEEESSH
T ss_pred HHHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEEEEECCEEEEEEChH
Confidence 345566677765 488999999999997 77 8999999999999999653221235777653
No 322
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.11 E-value=0.0087 Score=44.23 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=42.1
Q ss_pred CCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHh
Q 018405 49 AKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYF 107 (356)
Q Consensus 49 ~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l 107 (356)
|+.+..||++.+ |++ +. .+.+.|+.|...|+|++.....+ -.|.+|+.|..+
T Consensus 26 ~~~~~~eLa~~l~~is------~~-tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l 81 (107)
T 2hzt_A 26 GKKRTSELKRLMPNIT------QK-MLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSL 81 (107)
T ss_dssp CCBCHHHHHHHCTTSC------HH-HHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGG
T ss_pred CCCCHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHH
Confidence 589999999999 997 77 89999999999999997543222 358888877543
No 323
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.07 E-value=0.011 Score=45.39 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
+....++++.+-|...+|. .|.. |+.+..||++.+ |++ +. .|.+.|+.|...|+|++..
T Consensus 15 pi~~~l~~lg~kW~l~IL~---------~L~~----g~~rf~eL~~~l~gIs------~~-~Ls~~L~~Le~~GLV~R~~ 74 (131)
T 4a5n_A 15 PVEFTLDVIGGKWKGILFY---------HMID----GKKRFNEFRRICPSIT------QR-MLTLQLRELEADGIVHREV 74 (131)
T ss_dssp HHHHHHHHHCSSSHHHHHH---------HHTT----SCBCHHHHHHHCTTSC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred cHHHHHHHHcCcCHHHHHH---------HHhc----CCcCHHHHHHHhcccC------HH-HHHHHHHHHHHCCCEEEEe
Confidence 4555666666666555443 3333 589999999999 997 77 9999999999999999753
Q ss_pred eCCC---cceecchhchHhh
Q 018405 92 VDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 92 ~~~~---~~y~~t~~~~~l~ 108 (356)
...+ -.|++|+.|..+.
T Consensus 75 ~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 75 YHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp ECSSSCEEEEEECTTGGGGH
T ss_pred cCCCCCeEEEEECHhHHHHH
Confidence 3221 3699999887554
No 324
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.05 E-value=0.0094 Score=44.45 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=46.2
Q ss_pred chhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
|+..|.. |+.+..||++.+ +++ +. .+.+.|+.|...|+|++.....+ -.|.+|+.|..+.
T Consensus 27 IL~~L~~----~~~~~~eLa~~l~~is------~~-tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 27 LMDELFQ----GTKRNGELMRALDGIT------QR-VLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY 90 (112)
T ss_dssp HHHHHHH----SCBCHHHHHHHSTTCC------HH-HHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHh----CCCCHHHHHHHhccCC------HH-HHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence 3444554 489999999999 997 77 89999999999999997543222 3589998886444
No 325
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.05 E-value=0.045 Score=42.34 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=48.3
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|. . ++.|..+||+.++++ +. .+.+.++.|...|++.......++ .+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~-~---~~~~~~ela~~l~~s------~~-tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 38 LDFLVLRATS-D---GPKTMAYLANRYFVT------QS-AITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HHHHHHHHHT-T---SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHh-c---CCcCHHHHHHHhCCC------ch-hHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence 3445666776 4 589999999999997 77 899999999999999975322222 367788776444
No 326
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=96.04 E-value=0.0039 Score=54.64 Aligned_cols=57 Identities=11% Similarity=0.253 Sum_probs=45.5
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
+.|++.|...+ ++.|+.|||+.+|++ .. -+.|+|..|+..|++.. +.+++|++.+..
T Consensus 33 l~IL~~l~~~~--~~ltl~eia~~lgl~------ks-Tv~RlL~tL~~~G~v~~---~~~~~Y~LG~~~ 89 (275)
T 3mq0_A 33 VRILDLVAGSP--RDLTAAELTRFLDLP------KS-SAHGLLAVMTELDLLAR---SADGTLRIGPHS 89 (275)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHHHHTCC---------CHHHHHHHHHHTTSEEE---CTTSEEEECTHH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE---CCCCcEEehHHH
Confidence 45778887753 479999999999997 56 89999999999999995 334789998654
No 327
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.93 E-value=0.007 Score=42.04 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=45.0
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
....|.+.|.+. +.|+.|||+++|++ .. .+++.|..|...|+|.... ..+-.|+++..
T Consensus 18 ~~~~IL~lL~~~----g~sa~eLAk~LgiS------k~-aVr~~L~~Le~eG~I~~~~-~~PP~W~~~~~ 75 (82)
T 1oyi_A 18 IVCEAIKTIGIE----GATAAQLTRQLNME------KR-EVNKALYDLQRSAMVYSSD-DIPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHSSS----TEEHHHHHHHSSSC------HH-HHHHHHHHHHHHTSSEECS-SSSCEEESCC-
T ss_pred HHHHHHHHHHHc----CCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEeCC-CCCCcceeccC
Confidence 445567778764 49999999999997 77 9999999999999999653 22466776644
No 328
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=95.91 E-value=0.0082 Score=45.99 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=37.1
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
++.|..+||+.+|++ +. .++++|+.|...|++.... ...|.|.++.
T Consensus 25 ~~~s~~ela~~~~i~------~~-~v~~il~~L~~~Glv~~~~-g~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNLS------EH-YLEQLVSPLRNAGLVKSIR-GAYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTSC------HH-HHHHHHHHHHHTTSEEEC-----CCEEESS
T ss_pred CcCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEecC-CCCCceEeCC
Confidence 589999999999997 77 9999999999999998542 1236788764
No 329
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.91 E-value=0.0094 Score=41.53 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=37.1
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
.|++.|... ++.|..|||+.+|++ +. .+++.|+.|...|++..
T Consensus 4 ~Il~~L~~~---~~~s~~eLa~~lgvs------~~-tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH---NGGKTAEIAEALAVT------DY-QARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS---CCCCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 466677664 589999999999997 77 89999999999999984
No 330
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.89 E-value=0.026 Score=43.73 Aligned_cols=64 Identities=6% Similarity=0.147 Sum_probs=49.9
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|... ++ |..+||+.++++ +. .+.+.++.|...|++.+...+.++ .+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~---~~-~~~~la~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 38 LDFSILKATSEE---PR-SMVYLANRYFVT------QS-AITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHHHS---CE-EHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CC-CHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 455677888775 35 999999999998 77 899999999999999975433222 478888887544
No 331
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.85 E-value=0.0068 Score=46.05 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=45.6
Q ss_pred HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
-.++.|+..|.+ ++.++.+||+.+|++ +. .+.+.|+.|...|++..........|++++.
T Consensus 46 ~~rl~IL~~L~~----~~~s~~ela~~lgis------~s-tvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~ 105 (122)
T 1r1t_A 46 PNRLRLLSLLAR----SELCVGDLAQAIGVS------ES-AVSHQLRSLRNLRLVSYRKQGRHVYYQLQDH 105 (122)
T ss_dssp HHHHHHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEESSH
T ss_pred HHHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEEEeCCEEEEEEChH
Confidence 356677888875 489999999999997 77 8999999999999999653221134666543
No 332
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=95.83 E-value=0.014 Score=52.94 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCCCC------CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHH---HHhCCCCCCceEEEccCCC-
Q 018405 179 VVMEKVLESYKGFEH------VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYV---IKNAPSYLGIEHVGGDFFE- 247 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~------~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~~~~v~~~~~D~~~- 247 (356)
..+..|++.+. +.+ ...|||||.|.|.++..|+++....++++++. +.. ++.....++++++.+|+++
T Consensus 39 ~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 39 TVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDW 117 (353)
T ss_dssp HHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCH
T ss_pred HHHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccch
Confidence 34566776665 442 47899999999999999998643335666653 333 2221135789999999975
Q ss_pred C-C----CC--------------C-cEEEecccccCCChHHHHHHHHHH
Q 018405 248 S-V----PE--------------A-DTILMKWVLSSFDDEQSLKLLKNC 276 (356)
Q Consensus 248 ~-~----~~--------------~-D~i~~~~vlh~~~~~~~~~~L~~~ 276 (356)
+ + .+ . .+.+..|.=++.+.+-..++|..+
T Consensus 118 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~~ 166 (353)
T 1i4w_A 118 STYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCI 166 (353)
T ss_dssp HHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHH
T ss_pred hhHHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHhc
Confidence 3 1 11 1 245666666666554444566543
No 333
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.80 E-value=0.012 Score=43.39 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
+...+.+.+.+-+...+| ..|.. |+.+..||++.+ |++ +. .+.+.|+.|...|+|++..
T Consensus 14 ~~~~~l~~l~~~~~~~IL---------~~L~~----~~~~~~eL~~~l~gis------~~-~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLII---------FQINR----RIIRYGELKRAIPGIS------EK-MLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp HHHHHHHHHTSSSHHHHH---------HHHTT----SCEEHHHHHHHSTTCC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHcCccHHHHH---------HHHHh----CCcCHHHHHHHcccCC------HH-HHHHHHHHHHHCCCEEEee
Confidence 445555555555544433 34443 489999999999 597 77 8999999999999999754
Q ss_pred eCCC---cceecchhchHhh
Q 018405 92 VDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 92 ~~~~---~~y~~t~~~~~l~ 108 (356)
.+.+ -.|.+|+.|..+.
T Consensus 74 ~~~d~r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 74 YPEVPPRVEYSLTPLGEKVL 93 (107)
T ss_dssp ECSSSCEEEEEECHHHHTTH
T ss_pred cCCCCCeeEEEECccHHHHH
Confidence 3222 3599999886433
No 334
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.73 E-value=0.049 Score=43.18 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=50.2
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
+..++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|++...+.++ .+.+|+.|..+.
T Consensus 48 q~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 114 (162)
T 3k0l_A 48 QFTALSVLAAK---PNLSNAKLAERSFIK------PQ-SANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKL 114 (162)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTSC------GG-GHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHH
Confidence 44577788776 589999999999997 77 899999999999999975432222 477888887544
No 335
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.69 E-value=0.015 Score=44.66 Aligned_cols=76 Identities=11% Similarity=0.036 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-CCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 13 NFSYAMELAGAIVLPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-PLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
+...+.+.+.+-|... |+..|.. |+.+..||++.+ |++ +. .+.+.|+.|...|+|++..
T Consensus 24 ~~~~~l~~l~~~w~l~---------IL~~L~~----g~~~~~eLa~~l~gis------~~-tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVL---------ILVALRD----GTHRFSDLRRXMGGVS------EX-MLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp THHHHHHHHHSHHHHH---------HHHHGGG----CCEEHHHHHHHSTTCC------HH-HHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHcCCcHHH---------HHHHHHc----CCCCHHHHHHHhccCC------HH-HHHHHHHHHHHCCcEEEEe
Confidence 3444555554444433 3344444 589999999999 797 77 9999999999999999754
Q ss_pred eCCC---cceecchhchHhh
Q 018405 92 VDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 92 ~~~~---~~y~~t~~~~~l~ 108 (356)
...+ -.|.+|+.|..+.
T Consensus 84 ~~~d~r~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 84 YPVVPPHVEYSLTPLGEQVS 103 (131)
T ss_dssp ECSSSCEEEEEECHHHHHHH
T ss_pred cCCCCCeEEEEECccHHHHH
Confidence 3222 3699999887544
No 336
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.68 E-value=0.026 Score=43.69 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=46.2
Q ss_pred HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
..+..++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|.+...+.++ .+.+|+.|..+.
T Consensus 37 ~~~~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 105 (142)
T 3ech_A 37 PPDVHVLKLIDEQ---RGLNLQDLGRQMCRD------KA-LITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH 105 (142)
T ss_dssp HHHHHHHHHHHHT---TTCCHHHHHHHHC---------C-HHHHHHHHHHHTTSEEC----------CCEECHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHH
Confidence 4566678888876 589999999999997 66 899999999999999975322222 367787776444
No 337
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.67 E-value=0.027 Score=43.37 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=51.3
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|++.......+ ..|.+|+.|..+.
T Consensus 32 ~~~~iL~~l~~~---~~~~~~ela~~l~is------~~-~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 32 TRYSILQTLLKD---APLHQLALQERLQID------RA-AVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 445577777765 489999999999997 77 89999999999999997543222 3588899998665
No 338
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.64 E-value=0.014 Score=45.40 Aligned_cols=50 Identities=16% Similarity=0.138 Sum_probs=42.7
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
++.|..+||+.++++ +. .+.+.++.|...|+|.+. ..+.|.+|+.|..+.
T Consensus 21 ~~~~~~ela~~l~vs------~~-tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 21 GYARVSDIAEALAVH------PS-SVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIG 70 (142)
T ss_dssp SSCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHH
Confidence 489999999999997 77 899999999999999953 246799999887544
No 339
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.62 E-value=0.061 Score=42.16 Aligned_cols=64 Identities=6% Similarity=0.080 Sum_probs=47.5
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
++.++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|.+.....+ -.+.+|+.|..+.
T Consensus 45 ~~~iL~~l~~~---~~~t~~ela~~l~i~------~~-tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 111 (155)
T 3cdh_A 45 EWRVLACLVDN---DAMMITRLAKLSLME------QS-RMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA 111 (155)
T ss_dssp HHHHHHHHSSC---SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence 44566677664 589999999999997 77 89999999999999996422112 2477888886444
No 340
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.62 E-value=0.014 Score=40.26 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=38.0
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
|.+.|.+. |..++.|||+.++++ +. -++|-|+.|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLa~~l~VS------~~-TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR---GRMEAAQISQTLNTP------QP-MINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS---CSBCHHHHHHHTTCC------HH-HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe
Confidence 56777776 699999999999998 77 999999999999999953
No 341
>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}
Probab=95.57 E-value=0.011 Score=51.26 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=58.5
Q ss_pred CCCCceEEEEcC------CccHHHHHHHHhCCC-CeEEEccchHHHHhCCCCCCceEEEccCCC-CCCCC-cEEEe---c
Q 018405 191 FEHVKKLVDVGG------GLGATLNMIISKYPR-IKGINYDLPYVIKNAPSYLGIEHVGGDFFE-SVPEA-DTILM---K 258 (356)
Q Consensus 191 ~~~~~~vLDiG~------G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~-~~~~~-D~i~~---~ 258 (356)
.+...+|||+|+ -.|.. .+.+..|+ ..++.+|+.++...+ . .++.||+.+ ..... |+|++ .
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 346789999996 55663 33445676 689999974332211 2 458999876 22233 88876 2
Q ss_pred ccccCCC------hHHHHHHHHHHHHhCCCCCEEEE
Q 018405 259 WVLSSFD------DEQSLKLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 259 ~vlh~~~------~~~~~~~L~~~~~~L~pgG~lii 288 (356)
+.--+.+ ..=++.+|.=+.+.|+|||.+++
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvV 215 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAV 215 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 2211111 11377888889999999999998
No 342
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.54 E-value=0.018 Score=41.55 Aligned_cols=47 Identities=15% Similarity=0.273 Sum_probs=41.6
Q ss_pred CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 51 LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
.+..+||..+|++ +. .+++.++.|...|+++. . .+.|.+|+.|..+.
T Consensus 21 ~~~t~La~~~~ls------~~-~~~~~l~~L~~~GLI~~---~-~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANLS------YA-LTGRYIKMLMDLEIIRQ---E-GKQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---E-TTEEEECHHHHHHH
T ss_pred CCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCeEE---E-CCeeEEChhHHHHH
Confidence 8999999999998 88 99999999999999994 3 36799999998544
No 343
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=95.52 E-value=0.014 Score=41.07 Aligned_cols=43 Identities=9% Similarity=0.251 Sum_probs=38.3
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
|.+.|.+. |..|+.|||+.++++ +. -++|.|+.|...|++.+.
T Consensus 7 Il~~L~~~---g~vsv~eLA~~l~VS------~~-TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ---GRMEAKQLSARLQTP------QP-LIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS---CSEEHHHHHHHTTCC------HH-HHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc---CCCcHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence 56777776 699999999999998 77 999999999999999965
No 344
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.50 E-value=0.086 Score=41.19 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=49.4
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc--eeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC--SFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~--~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|+|.+ ...+.++ .+.+|+.|..+.
T Consensus 42 ~~~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~ 111 (154)
T 2qww_A 42 QQLAMINVIYST---PGISVADLTKRLIIT------GS-SAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLS 111 (154)
T ss_dssp HHHHHHHHHHHS---TTEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHH
Confidence 345567777775 589999999999997 77 89999999999999996 3222222 478888887444
No 345
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=95.49 E-value=0.016 Score=49.89 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=45.9
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
+.|++.|.+.+ ++.|+.|||+.+|++ +. -+.|+|+.|+..|++..+ ..+.|++++..
T Consensus 11 l~iL~~l~~~~--~~~~~~ela~~~gl~------~s-tv~r~l~~L~~~G~v~~~---~~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKNP--GDVSVSEIAEKFNMS------VS-NAYKYMVVLEEKGFVLRK---KDKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHCS--SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEC---TTSCEEECTHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEEC---CCCcEEECHHH
Confidence 45667776642 379999999999997 66 899999999999999953 34789997654
No 346
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.48 E-value=0.017 Score=44.50 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=49.8
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|+..|++.......++ .+.+|+.|..+.
T Consensus 39 ~~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (140)
T 2nnn_A 39 TQWAALVRLGET---GPCPQNQLGRLTAMD------AA-TIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL 106 (140)
T ss_dssp HHHHHHHHHHHH---SSBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence 355677888665 489999999999997 77 899999999999999974322222 377888776444
No 347
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.46 E-value=0.023 Score=44.21 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=49.7
Q ss_pred HHhcCchhHHHh-CCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 33 VVELDVFEIISK-AGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 33 a~~lglf~~L~~-~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
..++.++..|.. . ++.|..+||+.++++ +. .+.+.++.|...|+|.+.....+ -.+.+|+.|..+.
T Consensus 35 ~~~~~iL~~l~~~~---~~~~~~~la~~l~i~------~~-~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG---GDVTPSELAAAERMR------SS-NLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL 104 (147)
T ss_dssp HHHHHHHHHHHHTT---SCBCHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCCCHHHHHHHhCCC------hh-hHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence 345667788876 5 589999999999997 77 89999999999999996432222 2377888886444
No 348
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.46 E-value=0.068 Score=42.67 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=49.8
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|.+.....++ .+.+|+.|..+.
T Consensus 46 ~~~~iL~~L~~~---~~~t~~eLa~~l~is------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 113 (168)
T 2nyx_A 46 PQFRTLVILSNH---GPINLATLATLLGVQ------PS-ATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVV 113 (168)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 445677777765 589999999999997 77 899999999999999975322222 377888886444
No 349
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.42 E-value=0.018 Score=44.30 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=48.9
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|++.+...+.++ .+.+|+.|..+.
T Consensus 36 ~~~iL~~l~~~---~~~~~~~la~~l~~~------~~-tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 36 QFKVLCSIRCA---ACITPVELKKVLSVD------LG-ALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp HHHHHHHHHHH---SSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHHCCC------hH-HHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHH
Confidence 44566677664 489999999999997 77 899999999999999975322222 377888887444
No 350
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.40 E-value=0.03 Score=43.72 Aligned_cols=66 Identities=9% Similarity=0.113 Sum_probs=46.6
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.+..++..|...+ ++.|..+||+.++++ +. .+.+.++.|+..|+|.+...+.+. .+.+|+.|..+.
T Consensus 40 ~q~~vL~~l~~~~--~~~t~~eLa~~l~i~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 108 (150)
T 3fm5_A 40 RSYSVLVLACEQA--EGVNQRGVAATMGLD------PS-QIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (150)
T ss_dssp HHHHHHHHHHHST--TCCCSHHHHHHHTCC------HH-HHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCcCHHHHHHHHCCC------Hh-HHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHH
Confidence 4555666776542 478999999999997 77 899999999999999964322222 267888876444
No 351
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.39 E-value=0.013 Score=40.43 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=32.4
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
+|.|+.|||+.+|++ +. .+++-|..|...|+|.+.
T Consensus 23 ~~psv~EIa~~lgvS------~~-TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 23 APVKTRDIADAAGLS------IY-QVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEec
Confidence 589999999999997 77 899999999999999964
No 352
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.38 E-value=0.017 Score=44.34 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=48.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|+..|++.......++ .+.+|+.|..+.
T Consensus 30 ~~~~iL~~l~~~---~~~~~~ela~~l~~s------~~-tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 30 AQVACLLRIHRE---PGIKQDELATFFHVD------KG-TIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp HHHHHHHHHHHS---TTCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHH
Confidence 344566777665 589999999999997 77 899999999999999975322222 367787776443
No 353
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.37 E-value=0.016 Score=44.47 Aligned_cols=65 Identities=11% Similarity=0.198 Sum_probs=49.0
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|++.+...+.++ .+.+|+.|..+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~ela~~l~~~------~~-tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 34 VQFGVIQVLAKS---GKVSMSKLIENMGCV------PS-NMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHCSSC------CT-THHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence 345567777765 589999999999997 66 899999999999999965322222 367788776444
No 354
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.35 E-value=0.019 Score=44.63 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=50.6
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.+..++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|++...+.+ -.+.+|+.|..+.
T Consensus 32 ~q~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 32 NLFAVLYTLATE---GSRTQKHIGEKWSLP------KQ-TVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HHHHHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence 456677788665 489999999999997 77 89999999999999996432222 2478888887544
No 355
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=95.35 E-value=0.012 Score=50.47 Aligned_cols=59 Identities=14% Similarity=0.135 Sum_probs=46.2
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhch
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAK 105 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~ 105 (356)
+.|++.|.+.+ ++.|+.|||+.+|++ +. -+.|+|+.|+..|++..+. ..++|++++...
T Consensus 9 l~iL~~l~~~~--~~~s~~ela~~~gl~------~s-tv~r~l~~L~~~G~v~~~~--~~~~Y~lg~~~~ 67 (241)
T 2xrn_A 9 ASIMRALGSHP--HGLSLAAIAQLVGLP------RS-TVQRIINALEEEFLVEALG--PAGGFRLGPALG 67 (241)
T ss_dssp HHHHHHHHTCT--TCEEHHHHHHHTTSC------HH-HHHHHHHHHHTTTSEEECG--GGCEEEECSHHH
T ss_pred HHHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEeC--CCCeEEECHHHH
Confidence 34667776642 479999999999997 66 8999999999999999532 237899986543
No 356
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.34 E-value=0.11 Score=40.37 Aligned_cols=64 Identities=9% Similarity=0.130 Sum_probs=48.3
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|++.......++ .+.+|+.|..+.
T Consensus 44 ~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 110 (150)
T 2rdp_A 44 QFVALQWLLEE---GDLTVGELSNKMYLA------CS-TTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII 110 (150)
T ss_dssp HHHHHHHHHHH---CSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCCC------ch-hHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence 44566777765 589999999999997 77 899999999999999975322222 377888876444
No 357
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.32 E-value=0.018 Score=45.77 Aligned_cols=46 Identities=15% Similarity=0.189 Sum_probs=38.8
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
++.|..+||+.++++ +. .++++|..|...|+|.... ...|.|+++.
T Consensus 43 ~~~s~~eIA~~~~i~------~~-~l~kil~~L~~aGlv~s~r-G~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNLS------EH-YLEQLIGPLRNAGIVKSIR-GAHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC-STTCEEEECS
T ss_pred CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCeEEEec-CCCCceEecC
Confidence 589999999999997 88 9999999999999999642 2247788753
No 358
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=95.31 E-value=0.015 Score=45.47 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=38.5
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
++.|..+||+.++++ +. .++++|..|...|+|.... ..+|.|+++.
T Consensus 27 ~~~s~~~IA~~~~i~------~~-~l~kil~~L~~aGlv~s~r-G~~GGy~Lar 72 (143)
T 3t8r_A 27 GCISLKSIAEENNLS------DL-YLEQLVGPLRNAGLIRSVR-GAKGGYQLRV 72 (143)
T ss_dssp CCEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEECS-SSSSEEEESS
T ss_pred CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCEEEecC-CCCCCeeecC
Confidence 489999999999997 78 9999999999999998642 2247788764
No 359
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.24 E-value=0.044 Score=43.26 Aligned_cols=65 Identities=9% Similarity=0.165 Sum_probs=46.9
Q ss_pred HhcCchhHHH-hCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIIS-KAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~-~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|. .. ++.|..+||+.++++ +. .+.+.++.|+..|+|.+.....++ .+.+|+.|..+.
T Consensus 48 ~~~~iL~~L~~~~---~~~~~~ela~~l~i~------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 116 (160)
T 3boq_A 48 AKFDAMAQLARNP---DGLSMGKLSGALKVT------NG-NVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF 116 (160)
T ss_dssp HHHHHHHHHHHCT---TCEEHHHHHHHCSSC------CS-CHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCCCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence 3555778883 43 589999999999997 66 899999999999999964222222 367888776444
No 360
>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}
Probab=95.23 E-value=0.067 Score=51.35 Aligned_cols=111 Identities=14% Similarity=0.071 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhC-------------CCCeEEEccc-hHHHHhCCCC------CCce
Q 018405 180 VMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKY-------------PRIKGINYDL-PYVIKNAPSY------LGIE 239 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-------------p~~~~~~~D~-~~~~~~a~~~------~~v~ 239 (356)
++.-+++.+. .....+|+|-+||+|.++....+.. ....+.|+|. +.+...++.+ +.-.
T Consensus 205 Vv~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 205 VVRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence 4455555554 5566799999999999988765532 1345788885 6655555321 3345
Q ss_pred EEEccCCC-CCC------CCcEEEecccccC-CC-------------hHHHHHHHHHHHHhCC-------CCCEEEEEec
Q 018405 240 HVGGDFFE-SVP------EADTILMKWVLSS-FD-------------DEQSLKLLKNCYKALP-------DGGKLLNVNV 291 (356)
Q Consensus 240 ~~~~D~~~-~~~------~~D~i~~~~vlh~-~~-------------~~~~~~~L~~~~~~L~-------pgG~lii~e~ 291 (356)
+..+|... +.. ..|+|+++--+-. +. .+.....+..+.+.|+ |||++.++-+
T Consensus 284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 67788765 321 1399988544421 11 0112356777888776 6999888643
No 361
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=95.22 E-value=0.0061 Score=52.94 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=45.2
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
+.|++.|.+.+ ++.|+.|||+++|++ +. -+.|+|+.|+..|++..+. ..++|++.+..
T Consensus 9 l~IL~~l~~~~--~~lsl~eia~~lgl~------ks-T~~RlL~tL~~~G~v~~~~--~~~~Y~lG~~~ 66 (260)
T 3r4k_A 9 LTLLTYFNHGR--LEIGLSDLTRLSGMN------KA-TVYRLMSELQEAGFVEQVE--GARSYRLGPQV 66 (260)
T ss_dssp HHHHTTCBTTB--SEEEHHHHHHHHCSC------HH-HHHHHHHHHHHTTSEEECS--SSSEEEECTTH
T ss_pred HHHHHHHhhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEcC--CCCcEEcCHHH
Confidence 34666666532 589999999999997 66 8999999999999999532 23899997644
No 362
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.16 E-value=0.1 Score=40.74 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=48.3
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
++.++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|.+.....+ -.+.+|+.|..+.
T Consensus 39 ~~~iL~~l~~~---~~~t~~ela~~l~~s------~~-tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 105 (155)
T 1s3j_A 39 QLFVLASLKKH---GSLKVSEIAERMEVK------PS-AVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF 105 (155)
T ss_dssp HHHHHHHHHHH---SEEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence 34467777664 489999999999997 77 89999999999999997532222 2467787776444
No 363
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.11 E-value=0.019 Score=44.32 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=49.6
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.+..++..|... ++.|..+||+.++++ +. .+.+.++.|...|++.+.....++ .+.+|+.|..+.
T Consensus 37 ~~~~iL~~l~~~---~~~t~~ela~~l~~s------~~-~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 104 (142)
T 2fbi_A 37 QQWRVIRILRQQ---GEMESYQLANQACIL------RP-SMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCF 104 (142)
T ss_dssp HHHHHHHHHHHH---CSEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------Hh-HHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHH
Confidence 455667777765 489999999999997 77 899999999999999975332222 367787776444
No 364
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.09 E-value=0.022 Score=48.75 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=50.5
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
.++.++..|.+. ++.|..|||+.+|++ +. .+.|.|+.|...|++...+ ....|++|+.+..+.
T Consensus 153 ~~~~IL~~L~~~---~~~s~~eLA~~lgls------ks-Tv~r~L~~Le~~GlV~r~~--r~~~~~LT~~G~~l~ 215 (244)
T 2wte_A 153 EEMKLLNVLYET---KGTGITELAKMLDKS------EK-TLINKIAELKKFGILTQKG--KDRKVELNELGLNVI 215 (244)
T ss_dssp HHHHHHHHHHHH---TCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEET--TTTEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEeC--CccEEEECHHHHHHH
Confidence 345566666554 589999999999997 77 8999999999999999642 247899999998654
No 365
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.05 E-value=0.016 Score=44.94 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=48.9
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.+..++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|++...+.+ -.+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~---~~~t~~eLa~~l~~~------~~-~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 105 (143)
T 3oop_A 38 EQWSVLEGIEAN---EPISQKEIALWTKKD------TP-TVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET 105 (143)
T ss_dssp HHHHHHHHHHHH---SSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCCC------Hh-hHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence 455567777765 589999999999997 77 89999999999999996432222 2477888886444
No 366
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=95.02 E-value=0.025 Score=43.80 Aligned_cols=64 Identities=8% Similarity=0.007 Sum_probs=48.8
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
+..++..|... ++.|..+||+.++++ +. .+.+.++.|...|++.....+.++ .+.+|+.|..+.
T Consensus 31 ~~~iL~~l~~~---~~~t~~~la~~l~~s------~~-~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 31 QYLYLVRVCEN---PGIIQEKIAELIKVD------RT-TAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---cCcCHHHHHHHHCCC------Hh-HHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence 34466677665 489999999999997 77 899999999999999975322222 377888886444
No 367
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.01 E-value=0.034 Score=43.55 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=42.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC--CcceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG--QRLYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~--~~~y~~t~~~~~l~ 108 (356)
|+.+..||++.+|++ +. .+.+.|+.|...|+|++..... .-.|++|+.|..+.
T Consensus 36 g~~~~~eLa~~lgis------~~-tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLA------KN-ILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF 90 (146)
T ss_dssp TCCSHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred CCCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence 489999999999997 77 8999999999999999753211 13788998886433
No 368
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=94.99 E-value=0.025 Score=43.83 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=46.9
Q ss_pred hcCchhHH-HhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 35 ELDVFEII-SKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L-~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
+..++..| ... ++.|..+||+.++++ +. .+.+.++.|...|++.....+.++ .+.+|+.|..+.
T Consensus 39 ~~~iL~~l~~~~---~~~t~~~la~~l~~s------~~-~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 106 (146)
T 2fbh_A 39 RWLVLLHLARHR---DSPTQRELAQSVGVE------GP-TLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI 106 (146)
T ss_dssp HHHHHHHHHHCS---SCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHhCCC------hh-hHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence 34466677 443 589999999999997 77 899999999999999975322222 366776665433
No 369
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.95 E-value=0.034 Score=43.70 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=49.6
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|.+.....+ -.+.+|+.|..+.
T Consensus 45 ~~~~iL~~l~~~---~~~t~~ela~~l~is------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 45 TELYAFLYVALF---GPKKMKEIAEFLSTT------KS-NVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHTTSC------HH-HHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence 455677777665 489999999999997 77 89999999999999997532222 2367788776444
No 370
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=94.95 E-value=0.025 Score=43.79 Aligned_cols=65 Identities=9% Similarity=0.129 Sum_probs=49.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|++.......++ .+.+|+.|..+.
T Consensus 34 ~~~~iL~~l~~~---~~~~~~~la~~l~~s------~~-tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 34 AQFDILQKIYFE---GPKRPGELSVLLGVA------KS-TVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------ch-hHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHH
Confidence 455667777664 589999999999997 77 899999999999999975322222 477888886444
No 371
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=94.90 E-value=0.11 Score=40.54 Aligned_cols=63 Identities=14% Similarity=0.303 Sum_probs=45.5
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee--eCCC---cceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF--VDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~--~~~~---~~y~~t~~~~~l~ 108 (356)
+..++..| .. ++.|..+||+.++++ +. .+.+.++.|...|++.+.. .+.+ -.+.+|+.|..+.
T Consensus 40 q~~iL~~l-~~---~~~t~~eLa~~l~~~------~~-~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~ 107 (151)
T 3kp7_A 40 QSHVLNML-SI---EALTVGQITEKQGVN------KA-AVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI 107 (151)
T ss_dssp HHHHHHHH-HH---SCBCHHHHHHHHCSC------SS-HHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred HHHHHHHH-Hc---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence 33477788 54 599999999999997 66 8999999999999999621 1122 2366777776444
No 372
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=94.87 E-value=0.016 Score=50.22 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=43.4
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
.|++.|...+ ++.|+.|||+.+|++ +. -+.|+|+.|+..|++..+ .+++|++++..
T Consensus 27 ~iL~~l~~~~--~~~~~~eia~~~gl~------ks-tv~r~l~tL~~~G~v~~~---~~~~Y~lg~~~ 82 (260)
T 2o0y_A 27 DLLELFDAAH--PTRSLKELVEGTKLP------KT-TVVRLVATMCARSVLTSR---ADGSYSLGPEM 82 (260)
T ss_dssp HHHTTCBTTB--SSBCHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEEEC---TTSCEEECHHH
T ss_pred HHHHHHhhCC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEC---CCCeEEecHHH
Confidence 3455554321 489999999999997 66 899999999999999953 23489998754
No 373
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=94.83 E-value=0.03 Score=43.61 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=48.2
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|.+...+.+ ..+.+|+.|..+.
T Consensus 41 ~~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~ 108 (148)
T 3nrv_A 41 TEWRIISVLSSA---SDCSVQKISDILGLD------KA-AVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY 108 (148)
T ss_dssp HHHHHHHHHHHS---SSBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHcC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence 455677777775 589999999999997 77 89999999999999996532222 3477787776444
No 374
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.72 E-value=0.041 Score=39.45 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=45.3
Q ss_pred chhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhh-HHHHHHHHhhCCcccceeeCC-CcceecchhchHhh
Q 018405 38 VFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMM-LDRVLRLLVSYNALHCSFVDG-QRLYSLASVAKYFV 108 (356)
Q Consensus 38 lf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~-l~r~L~~l~~~g~l~~~~~~~-~~~y~~t~~~~~l~ 108 (356)
++..|...+ ++.|..|||+.++++ +. . +.+.++.|...|++..+..+. ...+.+|+.|..+.
T Consensus 20 ~L~~l~~~~--~~~t~~eLa~~l~is------~~-t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 20 TLLEFEKKG--YEPSLAEIVKASGVS------EK-TFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA 83 (95)
T ss_dssp HHHHHHHTT--CCCCHHHHHHHHCCC------HH-HHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCCC------ch-HHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence 444555541 279999999999997 77 8 999999999999999432221 13477888887544
No 375
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=94.70 E-value=0.13 Score=40.37 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=47.4
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
..++..|... ++.|..+||+.++++ +. .+.++++.|+..|+|++...+.++ .+.+|+.|..+.
T Consensus 53 ~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE---DGINQESLSDYLKID------KG-TTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS---CSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 3456666665 589999999999997 77 899999999999999975322222 467888886444
No 376
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=94.68 E-value=0.019 Score=44.98 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=48.0
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.+..++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|++...+.+ -.+.+|+.|..+.
T Consensus 42 ~q~~iL~~l~~~---~~~~~~eLa~~l~~~------~~-~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 109 (149)
T 4hbl_A 42 SQYLVMLTLWEE---NPQTLNSIGRHLDLS------SN-TLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ 109 (149)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence 455667777765 589999999999997 77 89999999999999996532222 2477787776444
No 377
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=94.67 E-value=0.12 Score=40.85 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=49.0
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|.+...+.+ -.+.+|+.|..+.
T Consensus 54 ~q~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 121 (161)
T 3e6m_A 54 PKLRLLSSLSAY---GELTVGQLATLGVME------QS-TTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKL 121 (161)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHH
Confidence 344577777765 489999999999997 77 89999999999999996532222 2477888887444
No 378
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=94.65 E-value=0.031 Score=44.29 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=49.3
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|+..|+|.+.....+ -.+.+|+.|..+.
T Consensus 53 ~~~~iL~~l~~~---~~~t~~ela~~l~is------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~ 120 (162)
T 3cjn_A 53 AKMRALAILSAK---DGLPIGTLGIFAVVE------QS-TLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY 120 (162)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 455677788775 589999999999997 77 89999999999999997432212 2477787776444
No 379
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=94.57 E-value=0.035 Score=43.89 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=47.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|+|.+.....+ ..+.+|+.|..+.
T Consensus 50 ~~~~iL~~l~~~---~~~t~~ela~~l~is------~~-tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 117 (162)
T 2fa5_A 50 PEWRVITILALY---PGSSASEVSDRTAMD------KV-AVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY 117 (162)
T ss_dssp HHHHHHHHHHHS---TTCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence 345577777765 589999999999997 77 89999999999999996421111 3477787776444
No 380
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=94.53 E-value=0.017 Score=44.62 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=47.2
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
+..++..|... ++.|..+||+.++++ +. .+.++++.|+..|+|++...+.+ -.+.+|+.|..+.
T Consensus 38 q~~vL~~l~~~---~~~t~~eLa~~l~~~------~~-tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (140)
T 3hsr_A 38 GYIVLMAIEND---EKLNIKKLGERVFLD------SG-TLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK 104 (140)
T ss_dssp HHHHHHHSCTT---CEEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred HHHHHHHHHHc---CCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence 34455566554 589999999999997 77 89999999999999997532222 2577888886444
No 381
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.49 E-value=0.046 Score=39.22 Aligned_cols=51 Identities=8% Similarity=0.236 Sum_probs=40.0
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-CcceecchhchHhh
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSLASVAKYFV 108 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-~~~y~~t~~~~~l~ 108 (356)
+.|..+||+.++++ +. .+.++++.|...|+|.. ..++ ...+++|+.|..+.
T Consensus 30 ~~t~~eLa~~l~i~------~~-tvs~~l~~Le~~Glv~~-~~d~R~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNSP------HS-YVWLIIKKFEEAKMVEC-ELEGRTKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSSC------HH-HHHHHHHHHHHTTSEEE-EEETTEEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCcC------HH-HHHHHHHHHHHCcCccC-CCCCCeEEEEEChhHHHHH
Confidence 38999999999997 77 89999999999999942 2221 13588998887544
No 382
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=94.48 E-value=0.06 Score=40.31 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=40.1
Q ss_pred HHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 33 VVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 33 a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
-.++.++..|.+ ++.|+.+||+.++++ +. .+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~----~~~s~~ela~~l~is------~s-tvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRN----GPLPVTDLAEAIGME------QS-AVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHH----CCCCHHHHHHHHSSC------HH-HHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence 456677777776 378999999999997 77 899999999999999864
No 383
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=94.47 E-value=0.23 Score=38.55 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=48.8
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|+|.+.....+ -.+.+|+.|..+.
T Consensus 42 ~~~iL~~l~~~---~~~t~~ela~~l~~~------~~-~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~ 108 (152)
T 3bj6_A 42 QRAILEGLSLT---PGATAPQLGAALQMK------RQ-YISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (152)
T ss_dssp HHHHHHHHHHS---TTEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence 45567777765 589999999999997 77 89999999999999997432222 2467788776443
No 384
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=94.45 E-value=0.024 Score=44.59 Aligned_cols=46 Identities=7% Similarity=0.055 Sum_probs=37.8
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
++.|..+||+.++++ +. .++++|..|...|+|.... +.|.|.++..
T Consensus 29 ~~~~~~~iA~~~~i~------~~-~l~kil~~L~~~Glv~s~r--G~GGy~L~~~ 74 (149)
T 1ylf_A 29 SLCTSDYMAESVNTN------PV-VIRKIMSYLKQAGFVYVNR--GPGGAGLLKD 74 (149)
T ss_dssp GGCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEC-----CCEEESSC
T ss_pred CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEEcc--CCCceEeCCC
Confidence 489999999999997 88 9999999999999999642 2577887643
No 385
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=94.43 E-value=0.039 Score=42.39 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=49.4
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.+..++..|...| +++.|..+||+.++++ +. .+.+.++.|+..|+|++...+.+ -.+.+|+.|..+.
T Consensus 32 ~~~~vL~~l~~~~-~~~~t~~ela~~l~~~------~~-tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~ 101 (139)
T 3eco_A 32 EQGHTLGYLYAHQ-QDGLTQNDIAKALQRT------GP-TVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLV 101 (139)
T ss_dssp HHHHHHHHHHHST-TTCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHhCCC------cc-cHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHH
Confidence 3455677776642 1389999999999997 77 89999999999999997532222 2467788776444
No 386
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.41 E-value=0.025 Score=43.96 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=50.0
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFVR 109 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 109 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|+|.+.....+ -.+.+|+.|..+..
T Consensus 41 ~~~~iL~~l~~~---~~~~~~~la~~l~~~------~~-tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 41 PQYLALLLLWEH---ETLTVKKMGEQLYLD------SG-TLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHHHHHHHH---SEEEHHHHHHTTTCC------HH-HHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHHHHHC---CCCCHHHHHHHHCCC------cC-cHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 445566777664 489999999999997 77 89999999999999996432222 23778888875443
No 387
>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A
Probab=94.38 E-value=0.032 Score=49.31 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCC
Q 018405 179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPS 234 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 234 (356)
..+..++..+. .+...|||++||+|..+...++. +.+++++|+ +.+++.+++
T Consensus 223 ~l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 223 ELAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 44566666654 46679999999999999988774 568999996 777777654
No 388
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=94.37 E-value=0.024 Score=49.04 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=46.6
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
.|++.|...+ ++.|+.|||+.+|++ +. -+.|+|+.|+..|++.. + ++.|++++....+.
T Consensus 18 ~iL~~l~~~~--~~~~~~eia~~~gl~------~s-tv~r~l~~L~~~G~v~~---~-~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 18 AVLLAFDAQR--PNPTLAELATEAGLS------RP-AVRRILLTLQKLGYVAG---S-GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHTCSSSC--SSCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---E-TTEEEECGGGHHHH
T ss_pred HHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEe---C-CCEEEEcHHHHHHH
Confidence 4556665432 489999999999997 66 89999999999999994 3 38999987765554
No 389
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=94.30 E-value=0.052 Score=41.69 Aligned_cols=65 Identities=9% Similarity=0.170 Sum_probs=47.5
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYF 107 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l 107 (356)
+..++..|...+ +++.|..+||+.++++ +. .+.+.++.|...|++.+...+.++ .+.+|+.|..+
T Consensus 36 ~~~iL~~l~~~~-~~~~~~~ela~~l~~~------~~-tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~ 103 (141)
T 3bro_A 36 QMTIIDYLSRNK-NKEVLQRDLESEFSIK------SS-TATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKL 103 (141)
T ss_dssp HHHHHHHHHHTT-TSCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTT
T ss_pred HHHHHHHHHHCC-CCCcCHHHHHHHHCCC------cc-hHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHH
Confidence 444567776652 1279999999999997 77 899999999999999975322222 46677777533
No 390
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.25 E-value=0.039 Score=44.01 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=39.1
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
++.|.++||+.++++ +. .+++++..|...|+++... ...|.|++...
T Consensus 27 ~~~s~~~IA~~~~is------~~-~l~kil~~L~~aGlv~s~r-G~~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHLN------PV-MIRNILSVLHKHGYLTGTV-GKNGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTSC------GG-GTHHHHHHHHHTTSSEEEC-STTCEEECCSC
T ss_pred CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEeec-CCCCCeEecCC
Confidence 489999999999997 77 9999999999999998642 22477988643
No 391
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=94.25 E-value=0.044 Score=42.44 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=46.0
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.+..++..|... +.|..+||+.++++ +. .+.+.++.|...|+|.+...+.+ -.+.+|+.|..+.
T Consensus 39 ~~~~iL~~l~~~----~~t~~eLa~~l~~s------~~-tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 39 TQEHILMLLSEE----SLTNSELARRLNVS------QA-AVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHHHTTC----CCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHHHhC----CCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 455667777764 49999999999998 77 89999999999999996432212 3467777775443
No 392
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=94.24 E-value=0.036 Score=42.13 Aligned_cols=66 Identities=12% Similarity=0.188 Sum_probs=47.8
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
+..++..|...+ +++.|..|||+.++++ +. .+.++++.|+..|+|.+...+.+ -.+.+|+.|..+.
T Consensus 39 q~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~ 107 (127)
T 2frh_A 39 EFAVLTYISENK-EKEYYLKDIINHLNYK------QP-QVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI 107 (127)
T ss_dssp HHHHHHHHHHTC-CSEEEHHHHHHHSSSH------HH-HHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred HHHHHHHHHhcc-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 444666666531 1479999999999997 77 89999999999999997432222 2366777776444
No 393
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=94.14 E-value=0.085 Score=37.87 Aligned_cols=53 Identities=21% Similarity=0.190 Sum_probs=42.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-CcceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-~~~y~~t~~~~~l~ 108 (356)
++.+..+||+.++++ .. .|.|.|..|...|++......+ -++-.+|+.|..+.
T Consensus 35 ~~~s~~eLa~~l~l~------~s-tLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l 88 (96)
T 2obp_A 35 TPWSLPKIAKRAQLP------MS-VLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA 88 (96)
T ss_dssp CCCBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCCc------hh-hHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence 578999999999997 67 9999999999999999754321 24567788887443
No 394
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=94.13 E-value=0.043 Score=42.94 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=49.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFVR 109 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~~ 109 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|+|.+.....+ -.+.+|+.|..+..
T Consensus 48 ~~~~iL~~l~~~---~~~t~~ela~~l~~s------~~-tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~ 116 (153)
T 2pex_A 48 PQYLVMLVLWET---DERSVSEIGERLYLD------SA-TLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRS 116 (153)
T ss_dssp HHHHHHHHHHHS---CSEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGG
T ss_pred HHHHHHHHHHhC---CCcCHHHHHHHhCCC------cc-cHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHH
Confidence 345567777765 589999999999997 77 89999999999999996432212 24788888875553
No 395
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=94.10 E-value=0.049 Score=41.96 Aligned_cols=65 Identities=11% Similarity=0.223 Sum_probs=49.6
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|... ++.|..+||+.++++ +. .+.+.++.|...|++.....+.++ .+.+|+.|..+.
T Consensus 38 ~~~~iL~~l~~~---~~~~~~ela~~l~~~------~~-tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~ 105 (142)
T 2bv6_A 38 PQFLVLTILWDE---SPVNVKKVVTELALD------TG-TVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR 105 (142)
T ss_dssp HHHHHHHHHHHS---SEEEHHHHHHHTTCC------TT-THHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHc---CCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence 455677777765 589999999999997 66 899999999999999975322222 467788876444
No 396
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=94.05 E-value=0.048 Score=39.75 Aligned_cols=48 Identities=15% Similarity=0.362 Sum_probs=39.5
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
.+..|+..|... ++.|..+||+.+|++ +. .+.+.|+.|...|+|....
T Consensus 21 ~~~~il~~l~~~---~~~s~~ela~~l~is------~~-tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 21 SDVRIYSLLLER---GGMRVSEIARELDLS------AR-FVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHH---CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEEe
Confidence 345566667554 489999999999997 77 8999999999999999653
No 397
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=93.97 E-value=0.043 Score=38.18 Aligned_cols=49 Identities=14% Similarity=0.272 Sum_probs=39.3
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+..|++.|.+.+ +++.|+.||++.+ +++ .. -+.|.|+.|+..|+|.+.
T Consensus 18 ~r~~IL~~l~~~~-~~~~s~~el~~~l~~~~~~is------~~-TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPD-NHHVSAEDLYKRLIDMGEEIG------LA-TVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGG-GSSBCHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCC-CCCCCHHHHHHHHHHhCCCCC------Hh-hHHHHHHHHHHCCCeEEE
Confidence 4455788886531 0389999999999 887 66 899999999999999964
No 398
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.93 E-value=0.099 Score=41.00 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=47.4
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
..++-.|...+ ++.+..+||+.++++ +. .+.++++.|+..|+|.+...+.++ ...+|+.|..+.
T Consensus 34 ~~vL~~L~~~~--~~~~~~eLa~~l~~~------~~-tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 34 WVTLYNINRLP--PEQSQIQLAKAIGIE------QP-SLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHHSC--TTSCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHHcC--CCCcHHHHHHHHCcC------HH-HHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 34555666543 367889999999998 77 899999999999999976433333 366788776444
No 399
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=93.91 E-value=0.025 Score=49.19 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=44.1
Q ss_pred CchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhc
Q 018405 37 DVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVA 104 (356)
Q Consensus 37 glf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~ 104 (356)
.|++.|...+ ++.|+.|||+.+|++ +. -+.|+|+.|+..|++.. + ++.|++++..
T Consensus 25 ~iL~~l~~~~--~~~~~~eia~~~gl~------~s-tv~r~l~tL~~~G~v~~---~-~~~Y~Lg~~~ 79 (265)
T 2ia2_A 25 AVIRCFDHRN--QRRTLSDVARATDLT------RA-TARRFLLTLVELGYVAT---D-GSAFWLTPRV 79 (265)
T ss_dssp HHHHTCCSSC--SSEEHHHHHHHHTCC------HH-HHHHHHHHHHHHTSEEE---S-SSEEEECGGG
T ss_pred HHHHHHHhCC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEe---c-CCEEEEcHHH
Confidence 4566665422 489999999999997 66 89999999999999994 4 4899998754
No 400
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=93.89 E-value=0.16 Score=44.74 Aligned_cols=119 Identities=19% Similarity=0.263 Sum_probs=66.3
Q ss_pred CCceEEEEcCCccHHHHH----HHHhCCCCe--EEEccc-h------------HHH----HhCCC--CCC--ceEEEccC
Q 018405 193 HVKKLVDVGGGLGATLNM----IISKYPRIK--GINYDL-P------------YVI----KNAPS--YLG--IEHVGGDF 245 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~----l~~~~p~~~--~~~~D~-~------------~~~----~~a~~--~~~--v~~~~~D~ 245 (356)
+.-+|+|+|-|+|..... +.+..|+.+ ++.++. + ... +.... ..+ +++..||.
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 457899999999975433 234467654 455542 1 000 00000 023 34566776
Q ss_pred CC---CCCC--CcEEEecccccCCChH-HHHHHHHHHHHhCCCCCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCC
Q 018405 246 FE---SVPE--ADTILMKWVLSSFDDE-QSLKLLKNCYKALPDGGKLLNVNVTIPEVPENSATSREISILDTICLFQVPH 319 (356)
Q Consensus 246 ~~---~~~~--~D~i~~~~vlh~~~~~-~~~~~L~~~~~~L~pgG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (356)
.+ ..+. .|++++-..--.-.++ -...++++++++++|||.++-..
T Consensus 176 ~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laTYt----------------------------- 226 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVSYS----------------------------- 226 (308)
T ss_dssp HHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEESC-----------------------------
T ss_pred HHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEEEe-----------------------------
Confidence 55 2232 2887763321111111 13578888999999888765310
Q ss_pred CccCCHHHHHHHHHHcCCcceeEEE
Q 018405 320 GRERTKQEYSELAIKAGFKGVNYEY 344 (356)
Q Consensus 320 ~~~~t~~e~~~ll~~aGf~~~~~~~ 344 (356)
....+++-|++|||++.++--
T Consensus 227 ----aag~VRR~L~~aGF~V~k~~G 247 (308)
T 3vyw_A 227 ----SSLSVRKSLLTLGFKVGSSRE 247 (308)
T ss_dssp ----CCHHHHHHHHHTTCEEEEEEC
T ss_pred ----CcHHHHHHHHHCCCEEEecCC
Confidence 123567888999999766543
No 401
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.85 E-value=0.069 Score=41.10 Aligned_cols=49 Identities=4% Similarity=-0.024 Sum_probs=41.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
++.|..+||+.++++ +. .+.+.++.|...|+|.+. . +.|.+|+.+..+.
T Consensus 30 ~~~s~~ela~~l~is------~~-tv~~~l~~Le~~Gli~r~---~-~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKDLKIA------PS-SVFEEVSHLEEKGLVKKK---E-DGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE---T-TEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCCC------hH-HHHHHHHHHHHCCCEEec---C-CeEEEChhHHHHH
Confidence 589999999999997 77 899999999999999953 2 6789998886443
No 402
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.73 E-value=0.079 Score=41.66 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=44.1
Q ss_pred hHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 40 EIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 40 ~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
..|... ++.|..+||+.++++ +. .+.+.|+.|...|+|... . +..+.+|+.|..+.
T Consensus 47 ~~l~~~---~~~~~~~la~~l~vs------~~-tvs~~l~~Le~~Glv~r~--~-~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 47 DLIREV---GEARQVDMAARLGVS------QP-TVAKMLKRLATMGLIEMI--P-WRGVFLTAEGEKLA 102 (155)
T ss_dssp HHHHHH---SCCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTCEEEE--T-TTEEEECHHHHHHH
T ss_pred HHHHhC---CCcCHHHHHHHhCcC------HH-HHHHHHHHHHHCCCEEEe--c-CCceEEChhHHHHH
Confidence 355543 478999999999998 77 899999999999999853 2 35678888886444
No 403
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=93.64 E-value=0.068 Score=44.32 Aligned_cols=66 Identities=11% Similarity=0.181 Sum_probs=48.6
Q ss_pred HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeC----C-Ccceecchh
Q 018405 29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD----G-QRLYSLASV 103 (356)
Q Consensus 29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~----~-~~~y~~t~~ 103 (356)
+|..-.++.|+..|.. +|.|+.+|++.+|++ +. .+.+.|+.|...|+|...... + .-.|++|+.
T Consensus 11 aL~~~~rl~IL~~L~~----~~~s~~eLa~~l~is------~s-tvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~ 79 (202)
T 2p4w_A 11 VLGNETRRRILFLLTK----RPYFVSELSRELGVG------QK-AVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKG 79 (202)
T ss_dssp HHHSHHHHHHHHHHHH----SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTT
T ss_pred HhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChH
Confidence 3444455666677765 589999999999997 77 899999999999999975331 1 135776665
Q ss_pred ch
Q 018405 104 AK 105 (356)
Q Consensus 104 ~~ 105 (356)
+.
T Consensus 80 ~~ 81 (202)
T 2p4w_A 80 LR 81 (202)
T ss_dssp EE
T ss_pred HH
Confidence 43
No 404
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=93.58 E-value=0.058 Score=40.80 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=39.2
Q ss_pred hcCchhHHHhCCCCCC-CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 35 ELDVFEIISKAGAGAK-LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~-~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
+..|+..|.+.+ +| .|+.|||+.++++ +. -+.|.|+.|...|++.+.
T Consensus 28 e~~il~~L~~~~--~~~~t~~eLa~~l~~s------~s-TV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 28 DLNVMKSFLNEP--DRWIDTDALSKSLKLD------VS-TVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHST--TCCEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCC--CCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEee
Confidence 455677776653 45 8999999999997 77 899999999999999964
No 405
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=93.50 E-value=0.064 Score=42.81 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=48.0
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.++.++..|...+ ++.|..+||+.++++ +. .+.+.++.|+..|+|.+...+.+ -.+.+|+.|..+.
T Consensus 54 ~q~~vL~~L~~~~--~~~t~~eLa~~l~i~------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 122 (166)
T 3deu_A 54 THWVTLHNIHQLP--PDQSQIQLAKAIGIE------QP-SLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI 122 (166)
T ss_dssp HHHHHHHHHHHSC--SSEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHCCC------Hh-hHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence 4555677776622 479999999999997 77 89999999999999996532222 2467787776444
No 406
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=93.47 E-value=0.12 Score=36.90 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=48.1
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHH-hCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVA-QIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~-~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
+..|+-.|.+. ++.|+.+||+ ..+++ .. .+.|-++.|...|+++. .++| ..+|+.|..+.
T Consensus 18 QfsiL~~L~~~---~~~t~~~Lae~~l~~d------rs-tvsrnl~~L~r~GlVe~---~~~D-l~LT~~G~~~l 78 (95)
T 1bja_A 18 TATILITIAKK---DFITAAEVREVHPDLG------NA-VVNSNIGVLIKKGLVEK---SGDG-LIITGEAQDII 78 (95)
T ss_dssp HHHHHHHHHHS---TTBCHHHHHHTCTTSC------HH-HHHHHHHHHHTTTSEEE---ETTE-EEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHhccc------HH-HHHHHHHHHHHCCCeec---CCCC-eeeCHhHHHHH
Confidence 44556667776 4899999999 99997 77 89999999999999982 3345 89999998544
No 407
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=93.47 E-value=0.16 Score=39.68 Aligned_cols=68 Identities=22% Similarity=0.192 Sum_probs=50.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCC-CCCCCchhHhhhHHHHHHHHhhCCcccceeeC----CC----cceecchhc
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIP-LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD----GQ----RLYSLASVA 104 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~----~~----~~y~~t~~~ 104 (356)
.++.|+..|..++ .+..|+++|+..++ ++ .. -+.+.|+.|+..|+|.+.... +. ..|++|+.|
T Consensus 30 tR~~IL~~Ll~~p-~~~~ta~eL~~~l~~lS------~a-TVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~G 101 (151)
T 3u1d_A 30 TRLDVLHQILAQP-DGVLSVEELLYRNPDET------EA-NLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEG 101 (151)
T ss_dssp HHHHHHHHHHHST-TSCBCHHHHHHHCTTSC------HH-HHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHH
T ss_pred HHHHHHHHHHcCC-CCCCCHHHHHHhcCCCC------HH-HHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHH
Confidence 5566677776542 14689999999999 87 77 899999999999999964211 11 279999999
Q ss_pred h-Hhhh
Q 018405 105 K-YFVR 109 (356)
Q Consensus 105 ~-~l~~ 109 (356)
. .|..
T Consensus 102 r~~l~~ 107 (151)
T 3u1d_A 102 IALLRA 107 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 8 5544
No 408
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=93.35 E-value=0.089 Score=42.97 Aligned_cols=70 Identities=7% Similarity=0.003 Sum_probs=52.7
Q ss_pred HHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 32 AVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
+..+..++..|...+ .++.|..+||+.++++ +. .+.+.++.|+..|+|.+...+.+ -.+.+|+.|..+.
T Consensus 40 t~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 111 (189)
T 3nqo_A 40 TSRQYMTILSILHLP-EEETTLNNIARKMGTS------KQ-NINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVM 111 (189)
T ss_dssp CHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHH
T ss_pred CHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHH
Confidence 345666777777521 1589999999999997 77 89999999999999997543222 3478899888554
Q ss_pred h
Q 018405 109 R 109 (356)
Q Consensus 109 ~ 109 (356)
.
T Consensus 112 ~ 112 (189)
T 3nqo_A 112 V 112 (189)
T ss_dssp H
T ss_pred H
Confidence 3
No 409
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=93.35 E-value=0.063 Score=41.75 Aligned_cols=66 Identities=8% Similarity=0.051 Sum_probs=41.3
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
+..++..|...+ +++.|..+||+.++++ +. .+.+.++.|+..|+|.+...+.+ -.+.+|+.|..+.
T Consensus 43 q~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~-~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~ 111 (148)
T 3jw4_A 43 QGRMIGYIYENQ-ESGIIQKDLAQFFGRR------GA-SITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV 111 (148)
T ss_dssp HHHHHHHHHHHT-TTCCCHHHHHHC-------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCCCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence 344666666531 1489999999999997 67 89999999999999996532222 2466777776444
No 410
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=93.22 E-value=0.089 Score=38.73 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=37.6
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+.|+..+...| .+.|..+||+.+|++ +. -+++.|..|...|++...
T Consensus 20 ~l~Il~~l~~~g--~~~s~~eLa~~lgvs------~~-tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDKG--TEMTDEEIANQLNIK------VN-DVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHHC--SCBCHHHHHHTTTSC------HH-HHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence 344566664331 378999999999997 77 899999999999999864
No 411
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=93.04 E-value=0.061 Score=41.99 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=41.4
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
++.|..+||+.++++ +. .+.++++.|+..|+|++...+.++ ...+|+.|..+.
T Consensus 50 ~~~t~~eLa~~l~~~------~~-tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMVH------PT-SVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCCC------HH-HHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHH
Confidence 579999999999998 77 899999999999999976433333 366788886444
No 412
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=92.87 E-value=0.069 Score=37.01 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=38.0
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCC----CCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIP----LKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~----~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
+..+++.|.+. ++.|+.||++.++ ++ +. -+.++|+.|...|+|.+..
T Consensus 11 e~~vL~~L~~~---~~~t~~ei~~~l~~~~~~s------~~-Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 11 ELEVMKVIWKH---SSINTNEVIKELSKTSTWS------PK-TIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHTS---SSEEHHHHHHHHHHHSCCC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHhhcCCcc------HH-HHHHHHHHHHHCCCeEEEe
Confidence 45566777654 5899999999996 54 66 8999999999999999753
No 413
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=92.80 E-value=0.097 Score=43.79 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=43.1
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
++.+..+||+.++++ +. .+.+.++.|...|++.+. .+..+.+|+.|..+.
T Consensus 19 ~~~~~~~lA~~l~vs------~~-tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQVS------PP-AVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCCC------hh-HHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHH
Confidence 589999999999998 77 899999999999999963 246789999987554
No 414
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=92.49 E-value=0.092 Score=40.95 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=36.8
Q ss_pred CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchh
Q 018405 52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASV 103 (356)
Q Consensus 52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~ 103 (356)
|+++||+.++++ +. .++++|..|...|+|.... . .|.|+++..
T Consensus 25 s~~~IA~~~~i~------~~-~l~kIl~~L~~aGlv~s~r-G-~GGy~Lar~ 67 (145)
T 1xd7_A 25 SSEIIADSVNTN------PV-VVRRMISLLKKADILTSRA-G-VPGASLKKD 67 (145)
T ss_dssp CHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEECCS-S-SSSCEESSC
T ss_pred CHHHHHHHHCcC------HH-HHHHHHHHHHHCCceEeec-C-CCCceecCC
Confidence 999999999997 88 9999999999999999642 3 577887643
No 415
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=92.14 E-value=0.1 Score=43.43 Aligned_cols=64 Identities=14% Similarity=0.020 Sum_probs=48.3
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
+..++..|... ++.|..+||+.++++ +. .+.++++.|...|+|.+...+.++ .+.+|+.|..+.
T Consensus 50 q~~iL~~L~~~---~~~t~~eLa~~l~i~------~s-tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~ 116 (207)
T 2fxa_A 50 EHHILWIAYQL---NGASISEIAKFGVMH------VS-TAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF 116 (207)
T ss_dssp HHHHHHHHHHH---TSEEHHHHHHHTTCC------HH-HHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred HHHHHHHHHHC---CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence 44567777665 489999999999997 77 899999999999999975322222 577888887444
No 416
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=92.12 E-value=0.041 Score=46.62 Aligned_cols=67 Identities=7% Similarity=0.182 Sum_probs=49.9
Q ss_pred HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC------Ccceecc
Q 018405 28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG------QRLYSLA 101 (356)
Q Consensus 28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~------~~~y~~t 101 (356)
.+|.--.++.|+..|.. +|.|+.+||+.+|++ +. .+.+.|+.|...|++......+ .-.|+++
T Consensus 7 kaL~~~~R~~IL~~L~~----g~~s~~ELa~~lglS------~s-tVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt 75 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC----MECYFSLLSSKVSVS------ST-AVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKIS 75 (232)
T ss_dssp HHHTSHHHHHHHHHHTT----TTTCSSSSCTTCCCC------HH-HHHHHHHHHHHTTSEEEEEECC-----CEEEEEEC
T ss_pred HHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEc
Confidence 33444456667788875 589999999999997 77 8999999999999999622222 1247877
Q ss_pred hhch
Q 018405 102 SVAK 105 (356)
Q Consensus 102 ~~~~ 105 (356)
+.+.
T Consensus 76 ~~~~ 79 (232)
T 2qlz_A 76 IAKS 79 (232)
T ss_dssp CCEE
T ss_pred cchh
Confidence 7654
No 417
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=92.12 E-value=0.11 Score=41.46 Aligned_cols=67 Identities=9% Similarity=0.130 Sum_probs=46.8
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.++.++..|...+ +++.|..+||+.++++ +. .+.++++.|+..|+|.+...+.++ .+.+|+.|..+.
T Consensus 47 ~q~~vL~~l~~~~-~~~~t~~eLa~~l~~~------~~-tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 116 (168)
T 3u2r_A 47 QQYNTLRLLRSVH-PEGMATLQIADRLISR------AP-DITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLL 116 (168)
T ss_dssp HHHHHHHHHHHHT-TSCEEHHHHHHHC---------CT-HHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHH
Confidence 4455667776631 0489999999999997 66 899999999999999975433322 467788877444
No 418
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=92.03 E-value=0.13 Score=34.65 Aligned_cols=55 Identities=16% Similarity=0.308 Sum_probs=43.6
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
+-.|+++|.+.| .|++..+||+.+|++ .. -+.+.|..|-..|.|.+. ..-.|.++
T Consensus 21 eekVLe~LkeaG--~PlkageIae~~Gvd------KK-eVdKaik~LKkEgkI~SP---kRCyw~~~ 75 (80)
T 2lnb_A 21 EQRILQVLTEAG--SPVKLAQLVKECQAP------KR-ELNQVLYRMKKELKVSLT---SPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHT--SCEEHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEE---ETTEEEES
T ss_pred HHHHHHHHHHcC--CCCCHHHHHHHHCCC------HH-HHHHHHHHHHHcCCccCC---CCceeeCC
Confidence 445677777765 699999999999997 56 899999999999999953 23566654
No 419
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.94 E-value=0.073 Score=39.95 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=43.8
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCC----CCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcc---eecchhchHhh
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIP----LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRL---YSLASVAKYFV 108 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~----~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~---y~~t~~~~~l~ 108 (356)
..++..|... ++.|..+||+.++ ++ +. .+.++|+.|...|+|.+... +.+ +.+|+.|..+.
T Consensus 13 ~~vL~~l~~~---~~~t~~ela~~l~~~~~~s------~~-tv~~~l~~L~~~Glv~r~~~--~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 13 WEVMNIIWMK---KYASANNIIEEIQMQKDWS------PK-TIRTLITRLYKKGFIDRKKD--NKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHHHH---SSEEHHHHHHHHHHHCCCC------HH-HHHHHHHHHHHHTSEEEEEE--TTEEEEEESSCHHHHHH
T ss_pred HHHHHHHHhC---CCcCHHHHHHHHhccCCCc------Hh-hHHHHHHHHHHCCCeEEEec--CCeEEEEEecCHHHHHH
Confidence 3455556543 5899999999998 65 66 89999999999999997532 232 24666665443
No 420
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=91.92 E-value=0.37 Score=32.54 Aligned_cols=45 Identities=4% Similarity=0.042 Sum_probs=35.5
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
+..|+.+||+++|++ .. -+.|.|..|...|+|...... +-.|+.+
T Consensus 28 ~~~Ta~~IAkkLg~s------K~-~vNr~LY~L~kkG~V~~~~~~-PP~W~~~ 72 (75)
T 1sfu_A 28 DYTTAISLSNRLKIN------KK-KINQQLYKLQKEDTVKMVPSN-PPKWFKN 72 (75)
T ss_dssp CEECHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEEECCS-SCEEEEC
T ss_pred cchHHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEecCCCC-CCCccCC
Confidence 459999999999997 66 899999999999999865322 3455443
No 421
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=91.62 E-value=0.25 Score=37.57 Aligned_cols=34 Identities=18% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
..|..+||+.++++ +. .+.+.++.|...|+|...
T Consensus 51 ~ps~~~LA~~l~~s------~~-~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTVS------AA-ECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSSC------HH-HHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence 36999999999998 77 899999999999999963
No 422
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=91.60 E-value=0.46 Score=35.41 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=50.2
Q ss_pred HHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC------CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--Ccc
Q 018405 29 AMHAVVELDVFEIISKAGAGAKLSVAEIVAQI------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QRL 97 (356)
Q Consensus 29 ~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--~~~ 97 (356)
+++-.+++=|+..|.. +|.+.-+|++.+ +++ +. .+...|+-|...|+|+..... + .-.
T Consensus 7 l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~ 75 (117)
T 4esf_A 7 MLKGSLEGCVLEIISR----RETYGYEITRHLNDLGFTEVV------EG-TVYTILVRLEKKKLVNIEKKPSDMGPPRKF 75 (117)
T ss_dssp HHHHHHHHHHHHHHHH----SCBCHHHHHHHHHHHTCTTCC------HH-HHHHHHHHHHHTTCEEEEEEC-----CEEE
T ss_pred HHHChHHHHHHHHHHc----CCCCHHHHHHHHHHcCCCCCC------cc-HHHHHHHHHHHCCCEEEEeecCCCCCCceE
Confidence 3444445556667776 589999999887 676 77 899999999999999975321 1 135
Q ss_pred eecchhchHhh
Q 018405 98 YSLASVAKYFV 108 (356)
Q Consensus 98 y~~t~~~~~l~ 108 (356)
|++|+.|+...
T Consensus 76 Y~LT~~G~~~l 86 (117)
T 4esf_A 76 YSLNEAGRQEL 86 (117)
T ss_dssp EEECHHHHHHH
T ss_pred EEECHHHHHHH
Confidence 99999997433
No 423
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=91.37 E-value=0.078 Score=42.90 Aligned_cols=68 Identities=10% Similarity=0.096 Sum_probs=47.2
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC---cceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ---RLYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~---~~y~~t~~~~~l~ 108 (356)
.++.++..|...+..++.|..+||+.++++ +. .+.+.++.|+..|+|.+...+.+ -.+.+|+.|..+.
T Consensus 70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~is------~~-tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~ 140 (181)
T 2fbk_A 70 AGWDLLLTLYRSAPPEGLRPTELSALAAIS------GP-STSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV 140 (181)
T ss_dssp HHHHHHHHHHHHCCSSCBCHHHHHHHCSCC------SG-GGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHCCC------HH-HHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 345567777765310129999999999997 66 88899999999999996422222 2467787776444
No 424
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=91.35 E-value=0.082 Score=43.01 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=48.6
Q ss_pred HHHhcCchhHHHhCCCCCCCCHHHHHHhCC-CCCCCchhHhhhHHHHHHHHhhCCcccceeeC--C---Ccceecchhch
Q 018405 32 AVVELDVFEIISKAGAGAKLSVAEIVAQIP-LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD--G---QRLYSLASVAK 105 (356)
Q Consensus 32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~~-~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~--~---~~~y~~t~~~~ 105 (356)
-=.++.|+..|.+ ++.|+.+|++.++ ++ .. .+.+.|+.|...|+|+...+. . +..|++++.+.
T Consensus 22 ~P~Rl~il~~L~~----~~~~~~~l~~~l~~~~------~~-~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~ 90 (182)
T 4g6q_A 22 HPLRWRITQLLIG----RSLTTRELAELLPDVA------TT-TLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAG 90 (182)
T ss_dssp SHHHHHHHHHTTT----SCEEHHHHHHHCTTBC------HH-HHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTT
T ss_pred CHHHHHHHHHHHh----CCCCHHHHHHHhcCCC------HH-HHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccc
Confidence 3367778888876 5899999999996 76 56 799999999999999864321 1 24688776554
Q ss_pred Hh
Q 018405 106 YF 107 (356)
Q Consensus 106 ~l 107 (356)
.+
T Consensus 91 ~~ 92 (182)
T 4g6q_A 91 DA 92 (182)
T ss_dssp TS
T ss_pred cC
Confidence 33
No 425
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=91.09 E-value=0.43 Score=35.60 Aligned_cols=67 Identities=12% Similarity=0.212 Sum_probs=49.4
Q ss_pred HHHHhcCchhHHHhCCCCCCCCHHHHHHhCC--------CCCCCchhH-hhhHHHHHHHHhhCCcccceeeC--C--Ccc
Q 018405 31 HAVVELDVFEIISKAGAGAKLSVAEIVAQIP--------LKDNNPEAA-AMMLDRVLRLLVSYNALHCSFVD--G--QRL 97 (356)
Q Consensus 31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~--------~~~~~~~~~-~~~l~r~L~~l~~~g~l~~~~~~--~--~~~ 97 (356)
.-..++-|+..|.. +|.+.-+|++.+. ++ + . .+.+.|+-|...|+|+..... + .-.
T Consensus 11 ~~~~~~~IL~~L~~----~~~~gyel~~~l~~~g~~~~~is------~~~-tly~~L~~Le~~GlI~~~~~~~~~~~r~~ 79 (118)
T 2esh_A 11 GWWLASTILLLVAE----KPSHGYELAERLAEFGIEIPGIG------HMG-NIYRVLADLEESGFLSTEWDTTVSPPRKI 79 (118)
T ss_dssp HHHHHHHHHHHHHH----SCBCHHHHHHHHHTTCCSSTTCC------CCC-CHHHHHHHHHHTTSEEEEEECSSSSCEEE
T ss_pred cchHHHHHHHHHHc----CCCCHHHHHHHHHHhCCcccCCC------Ccc-hHHHHHHHHHHCCCeEEEeecCCCCCceE
Confidence 33455566777776 4899999999883 55 6 6 899999999999999975432 1 136
Q ss_pred eecchhchHhh
Q 018405 98 YSLASVAKYFV 108 (356)
Q Consensus 98 y~~t~~~~~l~ 108 (356)
|++|+.|..+.
T Consensus 80 Y~LT~~G~~~l 90 (118)
T 2esh_A 80 YRITPQGKLYL 90 (118)
T ss_dssp EEECHHHHHHH
T ss_pred EEEChHHHHHH
Confidence 89999997443
No 426
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=91.03 E-value=0.19 Score=39.24 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=39.0
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|+..|.+. ++.|..|||+.+|++ +. .+.+.++.|...|++..
T Consensus 5 ~~~il~~L~~~---~~~~~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 5 DLRILKILQYN---AKYSLDEIAREIRIP------KA-TLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHTTC---TTSCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEE
Confidence 45677788765 589999999999998 77 89999999999999983
No 427
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=90.86 E-value=0.21 Score=38.74 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=38.7
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|++.|.+. ++.|..|||+++|++ +. .+.+.++.|...|++..
T Consensus 7 d~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 7 DLNIIEELKKD---SRLSMRELGRKIKLS------PP-SVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHC---SCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEE
Confidence 34577778775 589999999999998 77 89999999999999983
No 428
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=90.73 E-value=0.2 Score=36.16 Aligned_cols=51 Identities=31% Similarity=0.302 Sum_probs=38.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+..|++.|-+. ++.|+.||++.++.+ .+-.+. -+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~---~~~t~~eL~~~l~~~--~~~s~s-TVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSL---GEARVDEIYAQIPQE--LEWSLA-TVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHH---SCEEHHHHHHTCCGG--GCCCHH-HHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhC---CCCCHHHHHHHHhcc--cCCCHh-hHHHHHHHHHHCCCEEEE
Confidence 345677777664 589999999999742 000156 899999999999999965
No 429
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=90.61 E-value=0.26 Score=36.21 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=46.3
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHh----CCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC----cceecchhch
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQ----IPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ----RLYSLASVAK 105 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~----~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~----~~y~~t~~~~ 105 (356)
.++-|+..|.. +|.+--+|++. ++++ +. .+.+.|+.|...|+|+......+ -.|++|+.|.
T Consensus 10 l~~~IL~~L~~----~~~~gyel~~~l~~~~~i~------~~-tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~ 78 (108)
T 3l7w_A 10 IEYLILAIVSK----HDSYGYDISQTIKLIASIK------ES-TLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGE 78 (108)
T ss_dssp HHHHHHHHHHH----SCEEHHHHHHHHTTTCCCC------HH-HHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHH
T ss_pred HHHHHHHHHHc----CCCcHHHHHHHHHHHhCCC------cC-hHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHH
Confidence 44555666766 47777777777 4776 77 89999999999999997532212 2489999997
Q ss_pred Hhh
Q 018405 106 YFV 108 (356)
Q Consensus 106 ~l~ 108 (356)
...
T Consensus 79 ~~l 81 (108)
T 3l7w_A 79 KHL 81 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 430
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=90.57 E-value=0.23 Score=38.81 Aligned_cols=45 Identities=11% Similarity=0.191 Sum_probs=38.5
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|+..|.+. ++.|..|||+++|++ +. .+.+.++.|...|++..
T Consensus 9 ~~~iL~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 9 DRILVRELAAD---GRATLSELATRAGLS------VS-AVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 44567777765 589999999999998 77 89999999999999974
No 431
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=90.32 E-value=0.24 Score=39.25 Aligned_cols=45 Identities=13% Similarity=0.313 Sum_probs=38.5
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|++.|.+. ++.|..|||+++|++ +. .+.+.++.|...|++..
T Consensus 12 ~~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 12 DIKILQVLQEN---GRLTNVELSERVALS------PS-PCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEee
Confidence 34567777765 589999999999998 77 89999999999999983
No 432
>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}
Probab=90.12 E-value=0.37 Score=37.60 Aligned_cols=109 Identities=15% Similarity=0.173 Sum_probs=64.5
Q ss_pred HHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccchHHHHhCCCCCCceEEEccCCCCCC------CCcEE
Q 018405 182 EKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDLPYVIKNAPSYLGIEHVGGDFFESVP------EADTI 255 (356)
Q Consensus 182 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~~------~~D~i 255 (356)
...+..+. .-.+-|||+|-|+|..=-++.+.+|+.++.++|..-.+.-...-+.-.++.||+.+..| ...+.
T Consensus 31 ~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~~e~~ilGdi~~tL~~~~~r~g~~a~ 108 (174)
T 3iht_A 31 EHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPPEAQLILGDIRETLPATLERFGATAS 108 (174)
T ss_dssp HHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCCGGGEEESCHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCchHheecccHHHHHHHHHHhcCCceE
Confidence 34444443 34567999999999999999999999999999942111111111345678888776222 11344
Q ss_pred EecccccCCChHHHHHHHH----HHHHhCCCCCEEEEEecc
Q 018405 256 LMKWVLSSFDDEQSLKLLK----NCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 256 ~~~~vlh~~~~~~~~~~L~----~~~~~L~pgG~lii~e~~ 292 (356)
+...=+-.-..++-..... -+..+|.|||.++--.+.
T Consensus 109 LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 109 LVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp EEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 4333333223333333333 344567888888775554
No 433
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=90.08 E-value=0.91 Score=34.77 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=36.8
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCC-cceecch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQ-RLYSLAS 102 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~-~~y~~t~ 102 (356)
++.|..|||+.+|++ +. .+.+.++.|...|++.....+++ ..|.++.
T Consensus 40 ~~~t~~ela~~l~~~------~s-tvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 40 KPLTISDIMEELKIS------KG-NVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 589999999999997 77 89999999999999996421222 3455543
No 434
>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*
Probab=90.05 E-value=0.6 Score=40.06 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=64.1
Q ss_pred CCceEEEEcCCccHHHHHHHHh-------CCCCeEEEcc----chHH------------------------HH-------
Q 018405 193 HVKKLVDVGGGLGATLNMIISK-------YPRIKGINYD----LPYV------------------------IK------- 230 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~-------~p~~~~~~~D----~~~~------------------------~~------- 230 (356)
-++.|+|+|+-.|..+..++.. .++.++.++| +|.. ++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 4579999999999988886642 4667888888 2221 01
Q ss_pred hCCC----CCCceEEEccCCCC-------CCCC--cEEEecccccCCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 231 NAPS----YLGIEHVGGDFFES-------VPEA--DTILMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 231 ~a~~----~~~v~~~~~D~~~~-------~~~~--D~i~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
..+. .++|+++.|++.+. .|.. |++.+=.-.+ +.....|+.+...|+|||.+++-+
T Consensus 149 ~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 149 CSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp TTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred hhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcC
Confidence 0011 16799999998762 2332 7776644221 446788999999999999998844
No 435
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=89.97 E-value=0.55 Score=33.87 Aligned_cols=41 Identities=15% Similarity=0.150 Sum_probs=32.5
Q ss_pred HHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHh
Q 018405 31 HAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLV 82 (356)
Q Consensus 31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~ 82 (356)
..+.++||+..|.. |..|..|||+.+|++ .. .+.|+=++|.
T Consensus 43 ~l~~R~~l~~~L~~----ge~TQREIA~~lGiS------~s-tISRi~r~L~ 83 (101)
T 1jhg_A 43 ALGTRVRIIEELLR----GEMSQRELKNELGAG------IA-TITRGSNSLK 83 (101)
T ss_dssp HHHHHHHHHHHHHH----CCSCHHHHHHHHCCC------HH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCcCHHHHHHHHCCC------hh-hhhHHHHHHH
Confidence 44567999999988 479999999999997 55 7777655553
No 436
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=89.93 E-value=0.25 Score=38.62 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=38.5
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|++.|.+. ++.|..|||+.+|++ +. .+.+.++.|...|++..
T Consensus 9 ~~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 9 DKKIIKILQND---GKAPLREISKITGLA------ES-TIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHCSC------HH-HHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEE
Confidence 44567777765 589999999999998 77 89999999999999983
No 437
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=89.72 E-value=0.33 Score=30.59 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=37.9
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
-.|++.+..+| |-+.+..+++..|++ +. .+..+|+.|...|++.
T Consensus 13 ~~lL~yIr~sG--GildI~~~a~kygV~------kd-eV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNNG--GFLDIEHFSKVYGVE------KQ-EVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHTT--SEEEHHHHHHHHCCC------HH-HHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcC--CEEeHHHHHHHhCCC------HH-HHHHHHHHHHHCCCee
Confidence 34677787765 899999999999997 66 8999999999999987
No 438
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=89.68 E-value=0.29 Score=38.16 Aligned_cols=45 Identities=13% Similarity=0.281 Sum_probs=38.5
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|+..|.+. ++.|..|||+++|++ +. .+.+.++.|...|++..
T Consensus 11 d~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 11 DMQLVKILSEN---SRLTYRELADILNTT------RQ-RIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHTTSC------HH-HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 44577777775 589999999999998 77 89999999999999983
No 439
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=89.55 E-value=0.34 Score=37.68 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=39.3
Q ss_pred cCchhHHHhCCC--CCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 36 LDVFEIISKAGA--GAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 36 lglf~~L~~~~~--~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
..++..|...+. +++.|..+||+.++++ +. .+.++++.|+..|+|.... +.++ ...+|+.|..+.
T Consensus 36 ~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~------~~-tvsr~v~~Le~~glVr~~~-~~DrR~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 36 FSTLAVISLSEGSAGIDLTMSELAARIGVE------RT-TLTRNLEVMRRDGLVRVMA-GADARCKRIELTAKGRAAL 105 (148)
T ss_dssp HHHHHHHHC---------CHHHHHHHHTCC------HH-HHHHHHHHHHHTTSBC------------CCBCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeeC-CCCCCeeEEEECHHHHHHH
Confidence 334455544321 2468999999999998 77 8999999999999996422 2222 356677776443
No 440
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=89.54 E-value=0.32 Score=38.98 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=39.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
.+..|++.|.+. +..|..|||+++|++ +. .+.+.|+.|...|++..
T Consensus 28 ~d~~IL~~L~~~---~~~s~~eLA~~lglS------~~-tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 28 IDKKIIKILQND---GKAPLREISKITGLA------ES-TIHERIRKLRESGVIKK 73 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEe
Confidence 455678888775 589999999999998 77 89999999999999983
No 441
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=89.54 E-value=1.8 Score=38.30 Aligned_cols=89 Identities=16% Similarity=0.127 Sum_probs=55.1
Q ss_pred ceEEEEcCCc-c-HHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CCCCCcEEEecccccCCChHHHH
Q 018405 195 KKLVDVGGGL-G-ATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SVPEADTILMKWVLSSFDDEQSL 270 (356)
Q Consensus 195 ~~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~~~~D~i~~~~vlh~~~~~~~~ 270 (356)
.+|.=||+|. | .++..+.+.....+++++|. +..++.+.+..-+.-...|..+ ...++|+|+++- +.....
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~~ 108 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR 108 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGHH
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHHH
Confidence 6899999883 3 34555555433337889995 6666655433222222333333 233459998763 445567
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 018405 271 KLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 271 ~~L~~~~~~L~pgG~lii 288 (356)
.+++++...++|+..++-
T Consensus 109 ~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 109 EIAKKLSYILSEDATVTD 126 (314)
T ss_dssp HHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHhhccCCCcEEEE
Confidence 889999999999875544
No 442
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=89.50 E-value=0.26 Score=38.53 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=38.5
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|+..|.+. ++.|..|||+++|++ +. .+.+.++.|...|++..
T Consensus 10 d~~il~~L~~~---~~~s~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 10 DRGILEALMGN---ARTAYAELAKQFGVS------PE-TIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHC---TTSCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHcCCcce
Confidence 34567777775 589999999999998 77 89999999999999993
No 443
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=89.49 E-value=0.3 Score=38.72 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=38.9
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALH 88 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~ 88 (356)
+..|++.|.+. ++.|..+||+++|++ +. .+++-++.|...|++.
T Consensus 5 d~~il~~L~~~---~~~s~~~la~~lg~s------~~-tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 5 DRKILRILQED---STLAVADLAKKVGLS------TT-PCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHTTC---SCSCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCee
Confidence 45678888775 589999999999998 77 8999999999999998
No 444
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=89.46 E-value=0.33 Score=39.73 Aligned_cols=50 Identities=4% Similarity=0.147 Sum_probs=42.1
Q ss_pred HHHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 30 MHAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 30 l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
+....+..|+..|.+ ++.|..|||+.+|++ +. .+.+.++.|...|++...
T Consensus 17 l~d~~~~~IL~~L~~----~~~s~~eLA~~lglS------~s-tv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 17 MLEDTRRKILKLLRN----KEMTISQLSEILGKT------PQ-TIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHSHHHHHHHHHHTT----CCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred hCCHHHHHHHHHHHc----CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence 334456678888874 589999999999998 77 899999999999999964
No 445
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=89.40 E-value=0.29 Score=37.61 Aligned_cols=45 Identities=16% Similarity=0.295 Sum_probs=37.7
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
+..|+..|... ++.|..|||+.+|++ +. .+.+.|+.|...|++..
T Consensus 6 ~~~il~~L~~~---~~~~~~ela~~lg~s------~~-tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKD---ARTPFTEIAKKLGIS------ET-AVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEec
Confidence 34566677664 589999999999998 77 89999999999999983
No 446
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.36 E-value=0.29 Score=35.39 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
++.|..|||+.+|++ +. -+.+.|+.|...|++...
T Consensus 35 ~~~t~~ela~~l~is------~~-tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 35 KPITSEELADIFKLS------KT-TVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEee
Confidence 589999999999997 77 899999999999999964
No 447
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=89.13 E-value=1 Score=33.34 Aligned_cols=70 Identities=17% Similarity=0.308 Sum_probs=50.3
Q ss_pred HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC--------CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--
Q 018405 28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI--------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G-- 94 (356)
Q Consensus 28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~-- 94 (356)
++++-..++=|+..|.+ +|.+--+|.+.+ +++ +. .+.+.|+-|...|+|+..... +
T Consensus 7 ~~~~g~l~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~~~i~------~g-tly~~L~rLe~~GlI~~~~~~~~~~~~ 75 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQ----GDNYVYGIIKQVKEASNGEMELN------EA-TLYTIFKRLEKDGIISSYWGDESQGGR 75 (116)
T ss_dssp HHHHHHHHHHHHHHHHH----CCBCHHHHHHHHHHHTTTCCCCC------HH-HHHHHHHHHHHTTSEEEEEEC----CC
T ss_pred HHHhchHHHHHHHHHHh----CCCCHHHHHHHHHHHhCCCCCCC------cc-hHHHHHHHHHHCCCEEEEeeccCCCCC
Confidence 34444455556667776 588999998887 565 77 899999999999999975321 1
Q ss_pred CcceecchhchHhh
Q 018405 95 QRLYSLASVAKYFV 108 (356)
Q Consensus 95 ~~~y~~t~~~~~l~ 108 (356)
.-.|++|+.|+...
T Consensus 76 rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 76 RKYYRLTEIGHENM 89 (116)
T ss_dssp EEEEEECHHHHHHH
T ss_pred ceEEEECHHHHHHH
Confidence 13599999997433
No 448
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=89.12 E-value=0.43 Score=40.83 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=48.9
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchHhh
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKYFV 108 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~l~ 108 (356)
.+..++..|...+ +++.|..|||+.++++ +. .+.++++-|...|+|.+...+.+. ...+|+.|..+.
T Consensus 159 ~q~~vL~~L~~~~-~~~~t~~eLa~~l~i~------~~-tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~ 228 (250)
T 1p4x_A 159 VEFTILAIITSQN-KNIVLLKDLIETIHHK------YP-QTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHA 228 (250)
T ss_dssp HHHHHHHHHHTTT-TCCEEHHHHHHHSSSC------HH-HHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCCcCHHHHHHHHCCC------hh-hHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHH
Confidence 3445667776642 0259999999999998 77 899999999999999986433333 355677776444
No 449
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=88.93 E-value=0.35 Score=38.75 Aligned_cols=46 Identities=13% Similarity=0.330 Sum_probs=39.1
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
.+..|++.|... ++.|..|||+++|++ +. .+.+.++.|...|++..
T Consensus 18 ~d~~IL~~L~~~---~~~s~~eLA~~lglS------~~-tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKD---ARLTISELSEQLKKP------ES-TIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHC---TTCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc---CCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEe
Confidence 344577788775 589999999999998 77 89999999999999983
No 450
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=88.82 E-value=0.75 Score=34.18 Aligned_cols=70 Identities=17% Similarity=0.180 Sum_probs=50.3
Q ss_pred HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC------CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--Cc
Q 018405 28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QR 96 (356)
Q Consensus 28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~------~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--~~ 96 (356)
++++-..++=|+..|.+ +|.+--+|++.+ +++ +. .+...|+-|...|+|+..... + ..
T Consensus 8 ~l~~g~l~~~IL~lL~~----~p~~Gyei~~~l~~~g~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~g~~rk 76 (116)
T 3hhh_A 8 ELLKGILEGLVLAIIQR----KETYGYEITKILNDQGFTEIV------EG-TVYTILLRLEKNQWVIAEKKPSEKGPMRK 76 (116)
T ss_dssp HHHTTHHHHHHHHHHHH----SCBCHHHHHHHHHTTSCSSCC------HH-HHHHHHHHHHHTTSEEEEEEECC--CEEE
T ss_pred HHHhhhHHHHHHHHHhc----CCCCHHHHHHHHHHcCCCCCC------cc-HHHHHHHHHHHCCCEEEEeeecCCCCCce
Confidence 33444445556667776 588999999987 565 77 899999999999999975321 1 13
Q ss_pred ceecchhchHhh
Q 018405 97 LYSLASVAKYFV 108 (356)
Q Consensus 97 ~y~~t~~~~~l~ 108 (356)
.|++|+.|+...
T Consensus 77 ~Y~lT~~G~~~l 88 (116)
T 3hhh_A 77 FYRLTSSGEAEL 88 (116)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 599999997433
No 451
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=88.19 E-value=0.48 Score=39.90 Aligned_cols=54 Identities=7% Similarity=0.105 Sum_probs=43.3
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhhh
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFVR 109 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~~ 109 (356)
++.|..++|+.++++ +. .+.+.++.|...|++.+...+....+.+|+.|..+..
T Consensus 26 ~~~s~s~aA~~L~is------q~-avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 26 AYLTSSKLADMLGIS------QQ-SASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLY 79 (230)
T ss_dssp EECCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHH
Confidence 368999999999998 77 8999999999999999642112356889999985553
No 452
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=87.98 E-value=0.64 Score=35.64 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=31.4
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
..|.++||+.+|++ +. -+.+.|+.|...|++...
T Consensus 51 ~ps~~~LA~~~~~s------~~-~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 51 FPTPNQLQEGMSIS------VE-ECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp SCCHHHHHTTSSSC------HH-HHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence 57999999999998 77 899999999999999974
No 453
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=87.80 E-value=0.39 Score=35.79 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=51.5
Q ss_pred HHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhCC------CCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--Cc
Q 018405 28 AAMHAVVELDVFEIISKAGAGAKLSVAEIVAQIP------LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QR 96 (356)
Q Consensus 28 ~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--~~ 96 (356)
+++.-..++-|+..|.. +|.+.-+|++.+. ++ +. .+.+.|+.|...|+|+..... + ..
T Consensus 9 ~l~~g~l~~~IL~lL~~----~p~~gyel~~~l~~~~~~~i~------~g-tly~~L~~Le~~GlI~~~~~~~~~~~~rk 77 (117)
T 3elk_A 9 RILHGLITLYILKELVK----RPMHGYELQKSMFETTGQALP------QG-SIYILLKTMKERGFVISESSVNEKGQQLT 77 (117)
T ss_dssp HHHHHHHHHHHHHHHHH----SCEEHHHHHHHHHHHHSCCCC------TT-HHHHHHHHHHHHTSEEEEEEEC-CCCEEE
T ss_pred HHHhhHHHHHHHHHHHc----CCCCHHHHHHHHHHHhCCCCC------cc-hHHHHHHHHHHCCCEEEEeeecCCCCCce
Confidence 44455556667777776 5889999998875 65 56 899999999999999975321 1 13
Q ss_pred ceecchhch-Hhh
Q 018405 97 LYSLASVAK-YFV 108 (356)
Q Consensus 97 ~y~~t~~~~-~l~ 108 (356)
.|++|+.|+ .+.
T Consensus 78 ~Y~lT~~G~~~l~ 90 (117)
T 3elk_A 78 VYHITDAGKKFLC 90 (117)
T ss_dssp EEEECHHHHHHHH
T ss_pred EEEECHHHHHHHH
Confidence 699999998 444
No 454
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=87.67 E-value=0.65 Score=37.41 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=45.6
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhC--------CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-----Ccceecc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQI--------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-----QRLYSLA 101 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-----~~~y~~t 101 (356)
++-|+..|.. +|.+.-||++.+ +++ +. .+.+.|+-|...|+|+...... ...|++|
T Consensus 4 ~~~iL~lL~~----~~~~gyel~~~l~~~~~~~~~~s------~~-~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT 72 (179)
T 1yg2_A 4 PHVILTVLST----RDATGYDITKEFSASIGYFWKAS------HQ-QVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSIT 72 (179)
T ss_dssp HHHHHHHHHH----CCBCHHHHHHHHTTGGGGTCCCC------HH-HHHHHHHHHHHTTSEEECCC---------CEEEC
T ss_pred HHHHHHHHhc----CCCCHHHHHHHHHHHhCCccCCC------cC-cHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeC
Confidence 3446667776 599999999988 565 67 8999999999999999643211 2369999
Q ss_pred hhch
Q 018405 102 SVAK 105 (356)
Q Consensus 102 ~~~~ 105 (356)
+.|+
T Consensus 73 ~~G~ 76 (179)
T 1yg2_A 73 QAGR 76 (179)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 9997
No 455
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=87.24 E-value=0.55 Score=40.34 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCCCceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCC
Q 018405 179 VVMEKVLESYKGFEHVKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAP 233 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 233 (356)
..+..+++.+. .+...|||..||+|..+....+. +.+++++|+ +..++.++
T Consensus 200 ~l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 200 DLIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 45566666553 46689999999999999987774 568999996 77766654
No 456
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=86.77 E-value=0.52 Score=36.61 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=48.4
Q ss_pred HHhcCchhHHHhCCCCCCCCHHHHHHhC--------CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--Cccee
Q 018405 33 VVELDVFEIISKAGAGAKLSVAEIVAQI--------PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QRLYS 99 (356)
Q Consensus 33 a~~lglf~~L~~~~~~~~~t~~ela~~~--------~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--~~~y~ 99 (356)
-.++-|+..|.+ +|.+.-||++.+ +++ +. .+.+.|+-|...|+|++.... + .-.|+
T Consensus 41 ~~~~~IL~~L~~----~~~~gyeI~~~l~~~~~~~~~is------~g-tLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~ 109 (145)
T 1xma_A 41 YVDTIILSLLIE----GDSYGYEISKNIRIKTDELYVIK------ET-TLYSAFARLEKNGYIKSYYGEETQGKRRTYYR 109 (145)
T ss_dssp THHHHHHHHHHH----CCEEHHHHHHHHHHHHTTSCCCC------HH-HHHHHHHHHHHTTSEEEEEEEEC--CEEEEEE
T ss_pred cHHHHHHHHHHh----CCCCHHHHHHHHHHhhCCccCcC------hh-HHHHHHHHHHHCCCEEEEEeccCCCCCeEEEE
Confidence 355666677766 488989988887 576 77 899999999999999875322 1 14699
Q ss_pred cchhchHhh
Q 018405 100 LASVAKYFV 108 (356)
Q Consensus 100 ~t~~~~~l~ 108 (356)
+|+.|+.+.
T Consensus 110 LT~~G~~~l 118 (145)
T 1xma_A 110 ITPEGIKYY 118 (145)
T ss_dssp ECHHHHHHH
T ss_pred ECHHHHHHH
Confidence 999997444
No 457
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=86.67 E-value=0.46 Score=33.64 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=37.9
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
++.|+..|.+.+. .+++..||+++++++ .. -+.+.|+.|...|+|.+
T Consensus 22 q~~Vl~~I~~~g~-~gi~qkeLa~~~~l~------~~-tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 22 EKLVYQIIEDAGN-KGIWSRDVRYKSNLP------LT-EINKILKNLESKKLIKA 68 (91)
T ss_dssp HHHHHHHHHHHCT-TCEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCC-CCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE
Confidence 3456677766311 379999999999997 66 89999999999999994
No 458
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=86.65 E-value=0.52 Score=39.69 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=39.2
Q ss_pred CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 52 SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 52 t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
+..+||+.++++ +. .+.+.|+.|...|++++. .+..+.+|+.|..+.
T Consensus 26 ~~~~La~~l~vs------~~-tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQS------GP-TVSQTVSRMERDGLLRVA---GDRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEC---TTSCEEECHHHHHHH
T ss_pred cHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe---CCccEEECHHHHHHH
Confidence 449999999997 77 899999999999999953 346788999887554
No 459
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=86.10 E-value=0.4 Score=34.63 Aligned_cols=34 Identities=35% Similarity=0.382 Sum_probs=30.4
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
..+ |..+||+.+|++ .. -+++-|+.|...|++..
T Consensus 33 ~~lps~~eLa~~~~vS------r~-tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVA------AK-TVSRALAVLKSEGLVSS 67 (102)
T ss_dssp SBCCCHHHHHHHSSSC------TT-HHHHHTTTTTTSSCCEE
T ss_pred CCCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEE
Confidence 355 999999999997 66 89999999999999985
No 460
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=85.48 E-value=0.74 Score=34.97 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 31 HAVVELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+-.+.-|++.|.+.+ ++.|++||.+.+ +++ .. -+-|.|+.|+..|++.+.
T Consensus 9 ~T~qR~~Il~~l~~~~--~~~sa~ei~~~l~~~~~~is------~~-TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 9 STRQRAAISTLLETLD--DFRSAQELHDELRRRGENIG------LT-TVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHHCC--SCEEHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHTTTSEEEE
T ss_pred CCHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------Hh-hHHHHHHHHHHCCCEEEE
Confidence 3556777888887642 589999999998 675 66 899999999999999964
No 461
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=85.09 E-value=0.75 Score=37.62 Aligned_cols=34 Identities=18% Similarity=-0.017 Sum_probs=31.1
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccc
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHC 89 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~ 89 (356)
.|.|..|||+++|++ .. .+.+.|+.|...|++..
T Consensus 23 ~~~s~~eia~~lgl~------~~-tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 23 YPPSVREIARRFRIT------PR-GALLHLIALEKKGYIER 56 (196)
T ss_dssp SCCCHHHHHHHHTSC------HH-HHHHHHHHHHHTTSEEC
T ss_pred CCCCHHHHHHHcCCC------cH-HHHHHHHHHHHCCCEEe
Confidence 378999999999997 66 79999999999999995
No 462
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=85.02 E-value=0.98 Score=34.69 Aligned_cols=45 Identities=9% Similarity=0.120 Sum_probs=38.2
Q ss_pred cCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 36 LDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 36 lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
-.+.+.|.+ |+.|..+||+++|++ .. ..+-.|..|.-.|++.+..
T Consensus 14 ~~ILE~Lk~----G~~~t~~Iak~LGlS------hg-~aq~~Ly~LeREG~V~~Vk 58 (165)
T 2vxz_A 14 RDILALLAD----GCKTTSLIQQRLGLS------HG-RAKALIYVLEKEGRVTRVA 58 (165)
T ss_dssp HHHHHHHTT----CCEEHHHHHHHHTCC------HH-HHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHHHh----CCccHHHHHHHhCCc------HH-HHHHHHHHHHhcCceEEEE
Confidence 346677774 699999999999998 67 8888899999999999653
No 463
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=84.98 E-value=1 Score=34.80 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=44.2
Q ss_pred HHHhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-Ccceec
Q 018405 32 AVVELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSL 100 (356)
Q Consensus 32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-~~~y~~ 100 (356)
+-.+.-|++.|...+ ++.|++||.+.+ +++ .. -+-|.|+.|+..|++.+....+ ..+|.+
T Consensus 21 T~qR~~Il~~L~~~~--~~~sa~ei~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 86 (145)
T 2fe3_A 21 TPQRHAILEYLVNSM--AHPTADDIYKALEGKFPNMS------VA-TVYNNLRVFRESGLVKELTYGDASSRFDF 86 (145)
T ss_dssp CHHHHHHHHHHHHCS--SCCCHHHHHHHHGGGCTTCC------HH-HHHHHHHHHHHTTSEEEECCTTSCCEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------hh-hHHHHHHHHHHCCCEEEEeeCCCceEEEC
Confidence 345666888887642 589999999998 565 56 8999999999999999643221 234654
No 464
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=84.92 E-value=0.59 Score=31.81 Aligned_cols=42 Identities=5% Similarity=0.074 Sum_probs=34.9
Q ss_pred CCCCHHHHHHhCCC-CCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 49 AKLSVAEIVAQIPL-KDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 49 ~~~t~~ela~~~~~-~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
+.+++.++|+.+++ . .+ ++-.++.+|.+.|++++ .+.+.|..
T Consensus 29 ~~i~l~~aa~~L~v~~------kR-RiYDI~NVLe~igli~K---~~k~~~~W 71 (76)
T 1cf7_A 29 GVLDLKLAADTLAVRQ------KR-RIYDITNVLEGIGLIEK---KSKNSIQW 71 (76)
T ss_dssp TEEEHHHHHHHTTTCC------TH-HHHHHHHHHHHHTSEEE---EETTEEEE
T ss_pred CcCcHHHHHHHhCCcc------ce-ehhhHHHHHhHhcceee---cCCCcEEE
Confidence 68999999999999 6 67 89999999999999995 33455653
No 465
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=84.74 E-value=1.3 Score=33.47 Aligned_cols=43 Identities=23% Similarity=0.240 Sum_probs=34.8
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
..+ |..+||+.+|++ +. -+++-|+.|...|++... .+.|.|-.
T Consensus 26 ~~LPse~~La~~~gvS------r~-tVr~Al~~L~~~Gli~~~--~g~G~~V~ 69 (129)
T 2ek5_A 26 QRVPSTNELAAFHRIN------PA-TARNGLTLLVEAGILYKK--RGIGMFVS 69 (129)
T ss_dssp SCBCCHHHHHHHTTCC------HH-HHHHHHHHHHTTTSEEEE--TTTEEEEC
T ss_pred CcCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCcEEEe--cCCEEEEe
Confidence 356 899999999998 77 899999999999999963 33455543
No 466
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=84.71 E-value=0.73 Score=35.27 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=38.2
Q ss_pred HhcCchhHHHh-CCCCCCCCHHHHHHhCC----CCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 34 VELDVFEIISK-AGAGAKLSVAEIVAQIP----LKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 34 ~~lglf~~L~~-~~~~~~~t~~ela~~~~----~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+..|+..|.+ . ++.|..||++.++ ++ +. -+.++|+-|+..|+|.+.
T Consensus 10 ~e~~vL~~L~~~~---~~~t~~el~~~l~~~~~~~------~~-Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 10 LERAVMDHLWSRT---EPQTVRQVHEALSARRDLA------YT-TVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHTCS---SCEEHHHHHHHHTTTCCCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcC---CCCCHHHHHHHHhccCCCC------HH-HHHHHHHHHHHCCCEEEE
Confidence 34556667765 3 4899999999997 65 66 899999999999999975
No 467
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=84.43 E-value=0.92 Score=33.43 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=34.1
Q ss_pred CC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 50 KL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 50 ~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
.+ |..+||+.+|++ +. -+++-|+.|...|+++.. .+.|.|-.
T Consensus 32 ~lPs~~~La~~~~vS------r~-tvr~al~~L~~~Gli~~~--~~~G~~V~ 74 (113)
T 3tqn_A 32 MIPSIRKISTEYQIN------PL-TVSKAYQSLLDDNVIEKR--RGLGMLVK 74 (113)
T ss_dssp EECCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred cCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence 55 899999999998 77 899999999999999853 33455543
No 468
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=84.42 E-value=0.93 Score=36.78 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=44.7
Q ss_pred HHHHhcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCc-ccceeeCCCcceecch
Q 018405 31 HAVVELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNA-LHCSFVDGQRLYSLAS 102 (356)
Q Consensus 31 ~~a~~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~-l~~~~~~~~~~y~~t~ 102 (356)
..--...|.+.|.+.+ ++.|..|||+.+|++ +. -++|-++.|...|+ +.. . .+.|.+.+
T Consensus 19 ~~~R~~~Il~~L~~~~--~~~s~~eLa~~l~vS------~~-Ti~rdi~~L~~~G~~I~~---~-~~Gy~l~~ 78 (187)
T 1j5y_A 19 RQERLKSIVRILERSK--EPVSGAQLAEELSVS------RQ-VIVQDIAYLRSLGYNIVA---T-PRGYVLAG 78 (187)
T ss_dssp HHHHHHHHHHHHHHCS--SCBCHHHHHHHHTSC------HH-HHHHHHHHHHHHTCCCEE---E-TTEEECCT
T ss_pred HHHHHHHHHHHHHHcC--CCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCeEEE---E-CCEEEECC
Confidence 3445667888887532 479999999999998 77 89999999999999 763 2 25576654
No 469
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=84.37 E-value=0.89 Score=33.70 Aligned_cols=63 Identities=13% Similarity=0.177 Sum_probs=46.0
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCC------CCCCCchhHhhhHHHHHHHHhhCCcccceeeC---C--Ccceecchh
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIP------LKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD---G--QRLYSLASV 103 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~------~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~---~--~~~y~~t~~ 103 (356)
++-|+..|.. +|.+--+|++.+. ++ +. .+.+.|+-|...|+|+..... + .-.|++|+.
T Consensus 11 ~~~IL~~L~~----~~~~Gyei~~~l~~~~~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~ 79 (115)
T 4esb_A 11 EGCILYIISQ----EEVYGYELSTKLNKHGFTFVS------EG-SIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDK 79 (115)
T ss_dssp HHHHHHHHHH----SCEEHHHHHHHHHHTTCTTCC------HH-HHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHH
T ss_pred HHHHHHHHHc----CCCCHHHHHHHHHHcCCCCCC------cC-hHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHH
Confidence 3345556666 4888999998874 65 77 899999999999999975321 1 135999999
Q ss_pred chHhh
Q 018405 104 AKYFV 108 (356)
Q Consensus 104 ~~~l~ 108 (356)
|+...
T Consensus 80 G~~~l 84 (115)
T 4esb_A 80 GLEQL 84 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97433
No 470
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=84.08 E-value=1.3 Score=34.08 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC-CCcceecc
Q 018405 32 AVVELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQRLYSLA 101 (356)
Q Consensus 32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~-~~~~y~~t 101 (356)
+..+.-|++.|.+.+ ++.|++||.+.+ +++ .. -+-|.|+.|+..|++.+.... +..+|.+.
T Consensus 13 T~qR~~Il~~L~~~~--~h~sa~eI~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~ 79 (139)
T 3mwm_A 13 TRQRAAVSAALQEVE--EFRSAQELHDMLKHKGDAVG------LT-TVYRTLQSLADAGEVDVLRTAEGESVYRRC 79 (139)
T ss_dssp HHHHHHHHHHHTTCS--SCEEHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------HH-HHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence 456677888887643 589999999887 454 55 799999999999999964322 22456553
No 471
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=84.01 E-value=1.4 Score=36.98 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=40.1
Q ss_pred CCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 51 LSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 51 ~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
.+..+||+.++++ +. .+.+.++.|...|++.+ ..+..+.+|+.|..+.
T Consensus 25 ~~~~~la~~l~vs------~~-tvs~~l~~Le~~GlV~r---~~~~~v~LT~~G~~~~ 72 (226)
T 2qq9_A 25 PLRARIAERLEQS------GP-TVSQTVARMERDGLVVV---ASDRSLQMTPTGRTLA 72 (226)
T ss_dssp CBHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---CTTSBEEECHHHHHHH
T ss_pred ccHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEEE---eCCCCeEECHHHHHHH
Confidence 3559999999998 77 89999999999999995 3346789999997554
No 472
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=83.75 E-value=0.87 Score=42.84 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=46.3
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCc---ceecchhchH
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQR---LYSLASVAKY 106 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~---~y~~t~~~~~ 106 (356)
+..++..|.+.+ +++.|..|||+.++++ +. .+.|+++-|...|+|++...+.+. .-.+|+.|+.
T Consensus 406 q~~vl~~l~~~~-~~~~~~~~l~~~~~~~------~~-~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~ 472 (487)
T 1hsj_A 406 EIYILNHILRSE-SNEISSKEIAKCSEFK------PY-YLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKA 472 (487)
T ss_dssp HHHHHHHHHTCS-CSEEEHHHHHHSSCCC------HH-HHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHCCC------HH-HHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHH
Confidence 445666776641 1479999999999998 77 899999999999999976433332 2445555543
No 473
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=83.65 E-value=0.69 Score=34.57 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=38.7
Q ss_pred HhcCchhHHHhCCCCCCCCHHHHHHhCCC----CCCCchhHhhhHHHHHHHHhhCCccccee
Q 018405 34 VELDVFEIISKAGAGAKLSVAEIVAQIPL----KDNNPEAAAMMLDRVLRLLVSYNALHCSF 91 (356)
Q Consensus 34 ~~lglf~~L~~~~~~~~~t~~ela~~~~~----~~~~~~~~~~~l~r~L~~l~~~g~l~~~~ 91 (356)
.+..++..|.+. +|.|..||++.++. + +. -+.++|+-|...|+|.+..
T Consensus 11 ~q~~vL~~L~~~---~~~t~~el~~~l~~~~~~~------~~-Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 11 AEWDVMNIIWDK---KSVSANEIVVEIQKYKEVS------DK-TIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHHHS---SSEEHHHHHHHHHTTSCCC------HH-HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhc---CCCCHHHHHHHHhhcCCCC------hh-hHHHHHHHHHHCCceEEEe
Confidence 345566777665 58999999999974 4 66 8999999999999999753
No 474
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=83.58 E-value=6.2 Score=34.01 Aligned_cols=88 Identities=19% Similarity=0.158 Sum_probs=51.8
Q ss_pred ceEEEEcCCc-c-HHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCCCCcEEEecccccCCChHHHHH
Q 018405 195 KKLVDVGGGL-G-ATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVPEADTILMKWVLSSFDDEQSLK 271 (356)
Q Consensus 195 ~~vLDiG~G~-G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~~~D~i~~~~vlh~~~~~~~~~ 271 (356)
.+|.=||+|. | .++..+.+..++.+++++|. +...+.+.+.........|..+...++|+|++. .+......
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVila-----vp~~~~~~ 81 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILA-----VPIKKTID 81 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEEC-----SCHHHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEc-----CCHHHHHH
Confidence 5788899885 3 34555655544678888885 555544332211112223332222344988875 34455678
Q ss_pred HHHHHHHh-CCCCCEEE
Q 018405 272 LLKNCYKA-LPDGGKLL 287 (356)
Q Consensus 272 ~L~~~~~~-L~pgG~li 287 (356)
+++++... ++|+..++
T Consensus 82 v~~~l~~~~l~~~~ivi 98 (290)
T 3b1f_A 82 FIKILADLDLKEDVIIT 98 (290)
T ss_dssp HHHHHHTSCCCTTCEEE
T ss_pred HHHHHHhcCCCCCCEEE
Confidence 88888888 88876554
No 475
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}
Probab=83.53 E-value=4.6 Score=36.62 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=60.9
Q ss_pred ceEEEEcCCccHHHHHHHHhCCCCe-EEEccc-hHHHHhCCC-CCCceEEEccCCCC----C-------CCCcEEEeccc
Q 018405 195 KKLVDVGGGLGATLNMIISKYPRIK-GINYDL-PYVIKNAPS-YLGIEHVGGDFFES----V-------PEADTILMKWV 260 (356)
Q Consensus 195 ~~vLDiG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~-~~~v~~~~~D~~~~----~-------~~~D~i~~~~v 260 (356)
.+++|+-||.|.++..+..+. .+ +.++|. +..++..+. .+...++.+|+.+- . ++.|+|+...-
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP 80 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP 80 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence 589999999999999998864 54 457775 555554433 25678888888762 1 22399988766
Q ss_pred ccCCCh-------HHHHHHHH---HHHHhCCCCCEEEEEecccC
Q 018405 261 LSSFDD-------EQSLKLLK---NCYKALPDGGKLLNVNVTIP 294 (356)
Q Consensus 261 lh~~~~-------~~~~~~L~---~~~~~L~pgG~lii~e~~~~ 294 (356)
...++. +..-.++. ++.+.++| ++++.|.+..
T Consensus 81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~g 122 (376)
T 3g7u_A 81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPG 122 (376)
T ss_dssp CCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTT
T ss_pred CCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchH
Confidence 665541 11222333 34444566 6777787653
No 476
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=82.95 E-value=0.86 Score=29.93 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=38.7
Q ss_pred hcCchhHHHhCCCCCCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 35 ELDVFEIISKAGAGAKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 35 ~lglf~~L~~~~~~~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
+-.|++.|... ||.++-.||+.+|+. . .. -+.+-|..|...|+|..+
T Consensus 12 ee~I~~fL~~~---Gp~~AL~IAK~LGlk--t---AK-~VNp~LY~m~~~~lL~~D 58 (72)
T 3eyi_A 12 EEDIYRFLKDN---GPQRALVIAQALGMR--T---AK-DVNRDLYRMKSRHLLDMD 58 (72)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHTTCC--S---GG-GTHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHc---CCchHHHHHHHhCcc--h---hh-hcCHHHHHHHHccCcCCC
Confidence 44578888887 699999999999996 1 33 588999999999999754
No 477
>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52
Probab=82.90 E-value=2.8 Score=38.22 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=28.3
Q ss_pred CCCCceEEEEcCCccHHHHHHHHhC-------CCCeEEEccchH
Q 018405 191 FEHVKKLVDVGGGLGATLNMIISKY-------PRIKGINYDLPY 227 (356)
Q Consensus 191 ~~~~~~vLDiG~G~G~~~~~l~~~~-------p~~~~~~~D~~~ 227 (356)
.+.+-+|+|+|+|.|.++..+++.. ..+++..++.+.
T Consensus 78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp 121 (387)
T 1zkd_A 78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP 121 (387)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH
Confidence 3455689999999999999887652 345889998633
No 478
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=82.86 E-value=6.5 Score=35.11 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=57.7
Q ss_pred CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEcc------CCCC----CCCC-cEEEe
Q 018405 191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGD------FFES----VPEA-DTILM 257 (356)
Q Consensus 191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D------~~~~----~~~~-D~i~~ 257 (356)
.++..+||-+|+|. |.++..+++...-.+++++|. +.-.+.+++..--.++..+ ..+. .+.+ |+|+-
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 67788999999885 888888988764337888874 5545544433111222111 1100 1123 88765
Q ss_pred cccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 258 KWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 258 ~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
.-. . ...++.+.++|+|+|+++++..
T Consensus 249 ~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 249 CTG-----A---EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CSC-----C---HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCC-----C---hHHHHHHHHHhcCCCEEEEEec
Confidence 322 1 3457788899999999998764
No 479
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=82.71 E-value=2.7 Score=26.39 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecch
Q 018405 49 AKLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLAS 102 (356)
Q Consensus 49 ~~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~ 102 (356)
.+.|+.|+|...+++ -. ..+.-|+.|-..|-+.+ . ..+|++.|
T Consensus 17 QGMTaGEVAA~f~w~------Le-~ar~aLeqLf~~G~LRK---R-sSRYrlkp 59 (68)
T 3i71_A 17 QGMTAGEVAAHFGWP------LE-KARNALEQLFSAGTLRK---R-SSRYRLKP 59 (68)
T ss_dssp TCBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEE---E-CCEEEECC
T ss_pred ccccHHHHHHHhCCc------HH-HHHHHHHHHHhcchhhh---h-ccccccCc
Confidence 589999999999996 55 77888999999999994 3 37888764
No 480
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=82.63 E-value=1.6 Score=35.80 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=40.4
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecchhchHhh
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLASVAKYFV 108 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t~~~~~l~ 108 (356)
|.+..+||+.++++ +. -++..++-|...|+++++ . +...+|+.|..+.
T Consensus 30 ~V~~~~LA~~LgvS------~~-SV~~~lkkL~e~GLV~~~---~-~Gv~LTe~G~~~A 77 (200)
T 2p8t_A 30 PLGRKQISERLELG------EG-SVRTLLRKLSHLDIIRSK---Q-RGHFLTLKGKEIR 77 (200)
T ss_dssp CBCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEC------CEEECHHHHHHH
T ss_pred CccHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEEe---C-CCeEECHHHHHHH
Confidence 89999999999998 77 899999999999999953 2 5678999887444
No 481
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=82.43 E-value=1.2 Score=33.53 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=34.5
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCccee
Q 018405 49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYS 99 (356)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~ 99 (356)
..+ |..+||+.+|++ +. -+++-|+.|...|++... .+.|.|-
T Consensus 33 ~~lPse~~La~~~~vS------r~-tvr~Al~~L~~~Gli~~~--~g~G~~V 75 (126)
T 3by6_A 33 DQLPSVRETALQEKIN------PN-TVAKAYKELEAQKVIRTI--PGKGTFI 75 (126)
T ss_dssp CEECCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred CcCcCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEe--cCCeEEE
Confidence 356 999999999997 77 899999999999999963 3345554
No 482
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=82.41 E-value=1.6 Score=32.78 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=34.9
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceec
Q 018405 49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSL 100 (356)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~ 100 (356)
..+ |..+||+.+|++ +. -+++-|..|...|+|... .+.|.|-.
T Consensus 35 ~~Lps~~~La~~~~vS------r~-tvr~Al~~L~~~G~i~~~--~g~G~~V~ 78 (125)
T 3neu_A 35 DKLPSVREMGVKLAVN------PN-TVSRAYQELERAGYIYAK--RGMGSFVT 78 (125)
T ss_dssp CBCCCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred CCCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCeEEEe--cCCEEEEe
Confidence 355 699999999998 77 899999999999999963 34466644
No 483
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}
Probab=81.56 E-value=3.9 Score=36.82 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=56.9
Q ss_pred CCceEEEEc--CCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEc--cCCC----CCCCC-cEEEeccccc
Q 018405 193 HVKKLVDVG--GGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGG--DFFE----SVPEA-DTILMKWVLS 262 (356)
Q Consensus 193 ~~~~vLDiG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~--D~~~----~~~~~-D~i~~~~vlh 262 (356)
+..+||-+| +|.|.++..+++...+.++++++. +.-.+.+++..--.++.. |+.+ ..+.+ |+|+-+-
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~--- 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTT--- 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECS---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECC---
Confidence 567899998 457889999998766789999985 555555543321111111 1111 11223 7776532
Q ss_pred CCChHHHHHHHHHHHHhCCCCCEEEEEe
Q 018405 263 SFDDEQSLKLLKNCYKALPDGGKLLNVN 290 (356)
Q Consensus 263 ~~~~~~~~~~L~~~~~~L~pgG~lii~e 290 (356)
. ....++.+.+.|+|+|+++++.
T Consensus 248 --g---~~~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 248 --H---TDKHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp --C---HHHHHHHHHHHSCTTCEEEECS
T ss_pred --C---chhhHHHHHHHhcCCCEEEEEC
Confidence 1 2457788899999999999873
No 484
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}
Probab=81.54 E-value=3.9 Score=37.31 Aligned_cols=103 Identities=16% Similarity=0.060 Sum_probs=63.3
Q ss_pred HHhcCCCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-CC---------CC-C
Q 018405 186 ESYKGFEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-SV---------PE-A 252 (356)
Q Consensus 186 ~~~~~~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~~---------~~-~ 252 (356)
+... +++..+||-+|+|. |.++..+++...-.+++++|. +.-.+.+++.. .+++ |..+ +. +. +
T Consensus 179 ~~~~-~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG-a~~i--~~~~~~~~~~~~~~~~~g~g 254 (398)
T 2dph_A 179 VSAG-VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAG-FETI--DLRNSAPLRDQIDQILGKPE 254 (398)
T ss_dssp HHTT-CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTT-CEEE--ETTSSSCHHHHHHHHHSSSC
T ss_pred HHcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEE--cCCCcchHHHHHHHHhCCCC
Confidence 3344 77888999999986 888999998764338888884 66566655432 3332 2222 11 11 3
Q ss_pred -cEEEecccccCC---C---hHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 253 -DTILMKWVLSSF---D---DEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 253 -D~i~~~~vlh~~---~---~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
|+|+-.-.-... + .......++.+.+.|+|||+++++...
T Consensus 255 ~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~ 301 (398)
T 2dph_A 255 VDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY 301 (398)
T ss_dssp EEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred CCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence 887654332110 0 000134688888999999999887654
No 485
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=81.44 E-value=4.4 Score=30.29 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC----Cc
Q 018405 26 LPAAMHAVVELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG----QR 96 (356)
Q Consensus 26 ~~~~l~~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~----~~ 96 (356)
.+++++-..++=|+..|. . |.+--+|.+.+ +++ +. .+-..|+-|...|+|+...... ..
T Consensus 14 ~~~l~~g~l~~~IL~lL~-~----p~~GYei~~~l~~~~~~is------~g-tlY~~L~rLe~~GlI~~~~~~~~~~~rk 81 (123)
T 3ri2_A 14 VLELRRGTLVMLVLSQLR-E----PAYGYALVKSLADHGIPIE------AN-TLYPLMRRLESQGLLASEWDNGGSKPRK 81 (123)
T ss_dssp HHHHHHHHHHHHHHHHTT-S----CEEHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHTTSEEEEEEECSSCEEE
T ss_pred HHHHHhCcHHHHHHHHHc-C----CCCHHHHHHHHHHhCCCCC------cc-hHHHHHHHHHHCCCEEEEeccCCCCCce
Confidence 344455555566666666 3 67777777774 675 77 8999999999999999753211 13
Q ss_pred ceecchhchHhh
Q 018405 97 LYSLASVAKYFV 108 (356)
Q Consensus 97 ~y~~t~~~~~l~ 108 (356)
.|++|+.|+...
T Consensus 82 ~Y~LT~~Gr~~l 93 (123)
T 3ri2_A 82 YYRTTDEGLRVL 93 (123)
T ss_dssp EEEECHHHHHHH
T ss_pred EEEECHHHHHHH
Confidence 699999997433
No 486
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=80.92 E-value=2.5 Score=38.95 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCceEEEEcCCccHHHHHHH-HhCCC-CeEEEccc-hHHHHh
Q 018405 192 EHVKKLVDVGGGLGATLNMII-SKYPR-IKGINYDL-PYVIKN 231 (356)
Q Consensus 192 ~~~~~vLDiG~G~G~~~~~l~-~~~p~-~~~~~~D~-~~~~~~ 231 (356)
++...++|||++.|.++..++ +..+. .+++.++. |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 577899999999999999988 56665 78999994 665443
No 487
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=80.74 E-value=1.2 Score=32.10 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=30.8
Q ss_pred CC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccce
Q 018405 50 KL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCS 90 (356)
Q Consensus 50 ~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~ 90 (356)
.+ |..+||+.+|++ +. -+++-|+.|...|+|...
T Consensus 42 ~lps~~eLa~~lgVS------r~-tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 42 GLLVASKIADRVGIT------RS-VIVNALRKLESAGVIESR 76 (102)
T ss_dssp EEECHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE
T ss_pred cCCCHHHHHHHHCcC------HH-HHHHHHHHHHHCCCEEEE
Confidence 45 999999999998 77 899999999999999964
No 488
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=80.62 E-value=8.3 Score=33.01 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=50.7
Q ss_pred ceEEEEcCCc-cH-HHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCCCCC-CCcEEEecccccCCChHHHH
Q 018405 195 KKLVDVGGGL-GA-TLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFESVP-EADTILMKWVLSSFDDEQSL 270 (356)
Q Consensus 195 ~~vLDiG~G~-G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~~-~~D~i~~~~vlh~~~~~~~~ 270 (356)
.+|.=||+|. |. ++..+.+.....+++++|. +...+.+.+..-......|..+... ++|+|++. .+.....
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVila-----vp~~~~~ 76 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFR 76 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEc-----CCHHHHH
Confidence 3678888874 33 3334444322237888885 5555544332211111223322233 55998875 3545567
Q ss_pred HHHHHHHHhCCCCCEEEE
Q 018405 271 KLLKNCYKALPDGGKLLN 288 (356)
Q Consensus 271 ~~L~~~~~~L~pgG~lii 288 (356)
.+++++...++|+..++.
T Consensus 77 ~v~~~l~~~l~~~~iv~~ 94 (281)
T 2g5c_A 77 EIAKKLSYILSEDATVTD 94 (281)
T ss_dssp HHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhhCCCCcEEEE
Confidence 888889889998875554
No 489
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=80.55 E-value=1.2 Score=33.26 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=34.7
Q ss_pred CCCHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCcceecc
Q 018405 50 KLSVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYSLA 101 (356)
Q Consensus 50 ~~t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~~t 101 (356)
|.++.||++.++++ +. .++.||+.|+..|.+.. -.++.|..+
T Consensus 20 p~~~~~la~~~~~~------~~-~~~~~l~~l~~~G~l~~---i~~~~~~~~ 61 (121)
T 2pjp_A 20 PWWVRDLAKETGTD------EQ-AMRLTLRQAAQQGIITA---IVKDRYYRN 61 (121)
T ss_dssp CEEHHHHHHHTTCC------HH-HHHHHHHHHHHTTSEEE---EETTEEEEH
T ss_pred CCCHHHHHHHhCCC------HH-HHHHHHHHHHHCCCEEE---ecCCceECH
Confidence 67999999999997 77 89999999999999994 334666544
No 490
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=80.39 E-value=1.5 Score=33.27 Aligned_cols=42 Identities=14% Similarity=0.288 Sum_probs=34.7
Q ss_pred CCC-CHHHHHHhCCCCCCCchhHhhhHHHHHHHHhhCCcccceeeCCCccee
Q 018405 49 AKL-SVAEIVAQIPLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDGQRLYS 99 (356)
Q Consensus 49 ~~~-t~~ela~~~~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~~~~y~ 99 (356)
..+ |..+||+.+|++ +. -+++-|+.|...|++... .+.|.|-
T Consensus 36 ~~LPser~La~~~gVS------r~-tVReAl~~L~~eGlv~~~--~g~G~~V 78 (134)
T 4ham_A 36 EKILSIREFASRIGVN------PN-TVSKAYQELERQEVIITV--KGKGTFI 78 (134)
T ss_dssp CEECCHHHHHHHHTCC------HH-HHHHHHHHHHHTTSEEEE--TTTEEEE
T ss_pred CCCccHHHHHHHHCCC------HH-HHHHHHHHHHHCCcEEEE--cCcEEEE
Confidence 356 889999999998 77 899999999999999963 4456665
No 491
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=79.60 E-value=2 Score=33.37 Aligned_cols=60 Identities=22% Similarity=0.291 Sum_probs=45.2
Q ss_pred HHHhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccceeeCC-Ccceec
Q 018405 32 AVVELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVDG-QRLYSL 100 (356)
Q Consensus 32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~~-~~~y~~ 100 (356)
+-.+.-|++.|...+ ++.|++||.+.+ +++ .. -+-|.|+.|+..|++.+....+ ..+|..
T Consensus 26 T~qR~~IL~~l~~~~--~~~sa~ei~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 91 (150)
T 2xig_A 26 SKQREEVVSVLYRSG--THLSPEEITHSIRQKDKNTS------IS-SVYRILNFLEKENFISVLETSKSGRRYEI 91 (150)
T ss_dssp HHHHHHHHHHHHHCS--SCBCHHHHHHHHHHHSTTCC------HH-HHHHHHHHHHHTTSEEEEEETTTEEEEEE
T ss_pred CHHHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCC------Hh-hHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 566777889987643 589999999998 565 56 7999999999999999643222 234654
No 492
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=79.57 E-value=3 Score=36.17 Aligned_cols=97 Identities=9% Similarity=-0.086 Sum_probs=65.7
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCC----CCceEEEccCCC------CCCC-CcEEEecccc
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRIKGINYDL-PYVIKNAPSY----LGIEHVGGDFFE------SVPE-ADTILMKWVL 261 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~------~~~~-~D~i~~~~vl 261 (356)
...+||+=+|||.++.+.+. +.-+++.+|. +..++..+++ ++++++..|.+. +.++ .|+|++=--.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS--~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLR--SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSC--TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCC
Confidence 45689999999999999988 4467888886 6665554443 578999999654 1222 3998885443
Q ss_pred cCCChHHHHHHHHHHHH--hCCCCCEEEEEecccC
Q 018405 262 SSFDDEQSLKLLKNCYK--ALPDGGKLLNVNVTIP 294 (356)
Q Consensus 262 h~~~~~~~~~~L~~~~~--~L~pgG~lii~e~~~~ 294 (356)
..- ++..++++.+.+ .+.|+|.++|.=++.+
T Consensus 170 e~k--~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~ 202 (283)
T 2oo3_A 170 ERK--EEYKEIPYAIKNAYSKFSTGLYCVWYPVVN 202 (283)
T ss_dssp CST--THHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred CCC--cHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence 321 235555555555 3468899999766654
No 493
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1
Probab=79.37 E-value=4.5 Score=32.57 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=55.1
Q ss_pred CCCCceEEEEcC--CccHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEccCCC-C--------C-CCC-cEEE
Q 018405 191 FEHVKKLVDVGG--GLGATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGGDFFE-S--------V-PEA-DTIL 256 (356)
Q Consensus 191 ~~~~~~vLDiG~--G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~-~--------~-~~~-D~i~ 256 (356)
+++..+||.+|+ |.|..+..+++.. +.++++++. ++..+.+++. ....+ .|..+ . . ..+ |+++
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~-g~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi 112 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRL-GVEYV-GDSRSVDFADEILELTDGYGVDVVL 112 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTT-CCSEE-EETTCSTHHHHHHHHTTTCCEEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCCEE-eeCCcHHHHHHHHHHhCCCCCeEEE
Confidence 667789999994 5677777777654 457888775 5444444332 12211 13222 1 1 123 8777
Q ss_pred ecccccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 257 MKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 257 ~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
.+.. ...++.+.+.|+|+|+++++...
T Consensus 113 ~~~g---------~~~~~~~~~~l~~~G~~v~~g~~ 139 (198)
T 1pqw_A 113 NSLA---------GEAIQRGVQILAPGGRFIELGKK 139 (198)
T ss_dssp ECCC---------THHHHHHHHTEEEEEEEEECSCG
T ss_pred ECCc---------hHHHHHHHHHhccCCEEEEEcCC
Confidence 5321 13577888999999999987653
No 494
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=79.34 E-value=1.7 Score=33.07 Aligned_cols=61 Identities=15% Similarity=0.297 Sum_probs=43.3
Q ss_pred HHHhcCchhHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcccceeeC-CCcceec
Q 018405 32 AVVELDVFEIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNALHCSFVD-GQRLYSL 100 (356)
Q Consensus 32 ~a~~lglf~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l~~~~~~-~~~~y~~ 100 (356)
+-.+.-|++.|.+.+ +++.|++||.+.+ +++ .. -+-|.|+.|+..|++.+.... +..+|.+
T Consensus 17 T~qR~~Il~~L~~~~-~~~~sa~ei~~~l~~~~~~is------~a-TVYR~L~~L~e~Glv~~~~~~~~~~~Y~~ 83 (136)
T 1mzb_A 17 TLPRVKILQMLDSAE-QRHMSAEDVYKALMEAGEDVG------LA-TVYRVLTQFEAAGLVVRHNFDGGHAVFEL 83 (136)
T ss_dssp CHHHHHHHHHHHCC--CCSBCHHHHHHHHHHTTCCCC------HH-HHHHHHHHHHHHTSEEEECSSSSSCEEEE
T ss_pred CHHHHHHHHHHHhCC-CCCCCHHHHHHHHHhhCCCCC------HH-HHHHHHHHHHHCCcEEEEEeCCCceEEEe
Confidence 345566788886531 0389999999998 665 56 799999999999999964321 2245754
No 495
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1
Probab=79.29 E-value=3.1 Score=37.49 Aligned_cols=94 Identities=17% Similarity=0.091 Sum_probs=58.1
Q ss_pred CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEc---cCCCC----CCCC-cEEEeccc
Q 018405 191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGG---DFFES----VPEA-DTILMKWV 260 (356)
Q Consensus 191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~---D~~~~----~~~~-D~i~~~~v 260 (356)
+++..+||-+|+|. |.++..+++...-.+++++|. +.-.+.+++..--.++.. |+.+. .+.+ |+|+-.-.
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCC
Confidence 66788999999886 888888888764336788874 555555443211112211 11110 1123 77764322
Q ss_pred ccCCChHHHHHHHHHHHHhCCCCCEEEEEecc
Q 018405 261 LSSFDDEQSLKLLKNCYKALPDGGKLLNVNVT 292 (356)
Q Consensus 261 lh~~~~~~~~~~L~~~~~~L~pgG~lii~e~~ 292 (356)
. ...++.+.+.|+|+|+++++...
T Consensus 268 -----~---~~~~~~~~~~l~~~G~iv~~G~~ 291 (371)
T 1f8f_A 268 -----S---PEILKQGVDALGILGKIAVVGAP 291 (371)
T ss_dssp -----C---HHHHHHHHHTEEEEEEEEECCCC
T ss_pred -----C---HHHHHHHHHHHhcCCEEEEeCCC
Confidence 1 35678889999999999987654
No 496
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26
Probab=77.96 E-value=4.4 Score=36.26 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=46.9
Q ss_pred CceEEEEcCCccHHHHHHHHhCCCC-eEEEccc-hHHHHhCCCC-CCceEEEccCCCC----CC--CCcEEEecccccCC
Q 018405 194 VKKLVDVGGGLGATLNMIISKYPRI-KGINYDL-PYVIKNAPSY-LGIEHVGGDFFES----VP--EADTILMKWVLSSF 264 (356)
Q Consensus 194 ~~~vLDiG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~-~~v~~~~~D~~~~----~~--~~D~i~~~~vlh~~ 264 (356)
..+++|+-||.|.+...+..+.-+. .+.++|. +..++..+.+ +...++.+|+.+- .+ ..|+++...-...+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC----
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcch
Confidence 3689999999999999998864323 3667785 6655555433 4566788888762 22 34999887665555
Q ss_pred C
Q 018405 265 D 265 (356)
Q Consensus 265 ~ 265 (356)
+
T Consensus 82 S 82 (343)
T 1g55_A 82 T 82 (343)
T ss_dssp -
T ss_pred h
Confidence 4
No 497
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1
Probab=77.86 E-value=33 Score=30.32 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=56.7
Q ss_pred CCCCceEEEEcCCc-cHHHHHHHHhCCCCeEEEccc-hHHHHhCCCCCCceEEEc----cCCCC----C----CCC-cEE
Q 018405 191 FEHVKKLVDVGGGL-GATLNMIISKYPRIKGINYDL-PYVIKNAPSYLGIEHVGG----DFFES----V----PEA-DTI 255 (356)
Q Consensus 191 ~~~~~~vLDiG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~----D~~~~----~----~~~-D~i 255 (356)
+++..+||-+|+|. |.++..+++.. +.++++.+. +.-.+.+++..--.++.. |..+. . ..+ |+|
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v 244 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 244 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence 67788999999874 78888888875 556777774 555554443211112211 11110 1 123 887
Q ss_pred EecccccCCChHHHHHHHHHHHHhCCCCCEEEEEec
Q 018405 256 LMKWVLSSFDDEQSLKLLKNCYKALPDGGKLLNVNV 291 (356)
Q Consensus 256 ~~~~vlh~~~~~~~~~~L~~~~~~L~pgG~lii~e~ 291 (356)
+-.-. . ...++.+.++|+|+|+++++..
T Consensus 245 id~~g-----~---~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 245 IDCSG-----N---EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp EECSC-----C---HHHHHHHHHHSCTTCEEEECSC
T ss_pred EECCC-----C---HHHHHHHHHHHhcCCEEEEEec
Confidence 65322 1 3457778889999999998764
No 498
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*
Probab=77.49 E-value=6.8 Score=33.92 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=26.7
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCC----CeEEEcc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPR----IKGINYD 224 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~----~~~~~~D 224 (356)
+...|+=||||.|.+...|.+.+|+ ++++.+|
T Consensus 60 ~~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiD 95 (307)
T 3mag_A 60 DGATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLID 95 (307)
T ss_dssp TTCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCcEEEEecccCccHHHHHHHhchhhCCCeEEEEEc
Confidence 3469999999999999999988775 4777777
No 499
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=77.32 E-value=3 Score=26.67 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=26.6
Q ss_pred hHHHhCCCCCCCCHHHHHHhC-----CCCCCCchhHhhhHHHHHHHHhhCCcc
Q 018405 40 EIISKAGAGAKLSVAEIVAQI-----PLKDNNPEAAAMMLDRVLRLLVSYNAL 87 (356)
Q Consensus 40 ~~L~~~~~~~~~t~~ela~~~-----~~~~~~~~~~~~~l~r~L~~l~~~g~l 87 (356)
..+... ++.|++||++.+ +++ .. -+.|.|+ ..|++
T Consensus 12 ~ll~~~---~~~t~~el~~~l~~~~~~vs------~~-Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 12 EIITSN---EIETQDELVDMLKQDGYKVT------QA-TVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHS---CCCSHHHHHHHHHHTTCCCC------HH-HHHHHHH---HHTCE
T ss_pred HHHHcC---CCCCHHHHHHHHHHhCCCcC------HH-HHHHHHH---HcCCE
Confidence 344444 589999999999 887 66 6777777 66877
No 500
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}
Probab=77.24 E-value=6.2 Score=35.01 Aligned_cols=126 Identities=13% Similarity=0.086 Sum_probs=76.3
Q ss_pred CCceEEEEcCCccHHHHHHHHhCCCCe-E-EEccc-hHHHHhCCCC-CCceEEEccCCC-C---CC--CCcEEEeccccc
Q 018405 193 HVKKLVDVGGGLGATLNMIISKYPRIK-G-INYDL-PYVIKNAPSY-LGIEHVGGDFFE-S---VP--EADTILMKWVLS 262 (356)
Q Consensus 193 ~~~~vLDiG~G~G~~~~~l~~~~p~~~-~-~~~D~-~~~~~~a~~~-~~v~~~~~D~~~-~---~~--~~D~i~~~~vlh 262 (356)
+..+++|+-||.|.+...+..+.-+.+ + .++|. +..++..+.+ +.. ++.+|+.+ . .+ +.|+++...-..
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ 87 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-VQVKNLDSISIKQIESLNCNTWFMSPPCQ 87 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-CBCCCTTTCCHHHHHHTCCCEEEECCCCT
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-cccCChhhcCHHHhccCCCCEEEecCCcc
Confidence 457999999999999999988642223 3 57886 5554443322 222 55677766 2 23 249998776666
Q ss_pred CC--C--------hHHHHHHHHHHHH-hCCC---CCEEEEEecccCCCCCCchhhhhhhhhhhhhhhhcCCCccCCHHHH
Q 018405 263 SF--D--------DEQSLKLLKNCYK-ALPD---GGKLLNVNVTIPEVPENSATSREISILDTICLFQVPHGRERTKQEY 328 (356)
Q Consensus 263 ~~--~--------~~~~~~~L~~~~~-~L~p---gG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~ 328 (356)
.+ + ++..-.++..+.+ .++. .-+++++|.+..- . .+ .+.+.+
T Consensus 88 ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl-------------~---------~~--~~~~~i 143 (327)
T 3qv2_A 88 PYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLF-------------K---------ES--LVFKEI 143 (327)
T ss_dssp TCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGG-------------G---------GS--HHHHHH
T ss_pred CcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhh-------------c---------Ch--HHHHHH
Confidence 65 1 1122245555555 4431 2367777766421 0 01 245788
Q ss_pred HHHHHHcCCcceeEE
Q 018405 329 SELAIKAGFKGVNYE 343 (356)
Q Consensus 329 ~~ll~~aGf~~~~~~ 343 (356)
.+.|++.||.+...+
T Consensus 144 ~~~l~~~GY~v~~~v 158 (327)
T 3qv2_A 144 YNILIKNQYYIKDII 158 (327)
T ss_dssp HHHHHHTTCEEEEEE
T ss_pred HHHHHhCCCEEEEEE
Confidence 889999999876544
Done!