Query 018406
Match_columns 356
No_of_seqs 315 out of 2734
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 2.1E-33 4.6E-38 281.6 24.3 292 50-352 16-310 (571)
2 COG3104 PTR2 Dipeptide/tripept 99.9 1.5E-24 3.4E-29 209.1 17.4 192 65-286 17-212 (498)
3 PRK10207 dipeptide/tripeptide 99.9 1.9E-23 4.2E-28 208.4 23.2 190 65-285 10-199 (489)
4 TIGR00926 2A1704 Peptide:H+ sy 99.9 1.5E-21 3.2E-26 199.6 21.8 204 83-309 1-211 (654)
5 TIGR00924 yjdL_sub1_fam amino 99.9 2.4E-21 5.1E-26 193.0 22.8 192 65-287 6-199 (475)
6 PRK15462 dipeptide/tripeptide 99.9 6.3E-21 1.4E-25 189.0 23.0 188 66-284 6-193 (493)
7 PRK09584 tppB putative tripept 99.9 3.6E-20 7.9E-25 185.6 23.5 188 66-284 18-205 (500)
8 KOG1330 Sugar transporter/spin 99.8 1.6E-18 3.4E-23 165.7 7.9 179 65-279 29-208 (493)
9 TIGR02332 HpaX 4-hydroxyphenyl 99.7 1.2E-16 2.7E-21 156.3 21.4 176 65-276 4-185 (412)
10 PRK03545 putative arabinose tr 99.7 2.8E-16 6.1E-21 152.2 23.4 175 66-276 6-180 (390)
11 PRK15403 multidrug efflux syst 99.7 4.5E-16 9.8E-21 152.4 24.2 149 95-278 41-189 (413)
12 PRK10054 putative transporter; 99.7 5.2E-16 1.1E-20 151.0 23.2 175 66-276 4-178 (395)
13 PRK14995 methyl viologen resis 99.7 5.8E-16 1.3E-20 155.1 23.4 178 67-279 4-181 (495)
14 PRK10213 nepI ribonucleoside t 99.7 9.1E-16 2E-20 149.3 23.4 177 62-274 13-189 (394)
15 TIGR00710 efflux_Bcr_CflA drug 99.7 1.7E-15 3.7E-20 145.5 23.5 176 67-278 3-178 (385)
16 PF07690 MFS_1: Major Facilita 99.7 5.3E-16 1.1E-20 146.7 19.5 166 75-275 2-167 (352)
17 PRK12382 putative transporter; 99.7 2E-15 4.3E-20 146.2 23.7 172 70-268 16-187 (392)
18 TIGR00900 2A0121 H+ Antiporter 99.7 1.6E-15 3.4E-20 144.0 22.4 172 74-276 4-175 (365)
19 COG2814 AraJ Arabinose efflux 99.7 3E-15 6.4E-20 143.1 23.9 182 64-281 8-189 (394)
20 TIGR00891 2A0112 putative sial 99.7 2.6E-15 5.6E-20 144.9 23.7 173 63-271 6-180 (405)
21 PRK10504 putative transporter; 99.7 3E-15 6.5E-20 148.6 24.5 178 68-281 9-186 (471)
22 PRK15402 multidrug efflux syst 99.7 1.8E-15 3.9E-20 147.3 22.1 175 68-278 9-186 (406)
23 TIGR00903 2A0129 major facilit 99.7 2.5E-15 5.3E-20 145.0 21.9 154 88-277 9-162 (368)
24 PRK11646 multidrug resistance 99.7 4E-15 8.8E-20 145.0 23.5 168 72-275 13-180 (400)
25 PRK05122 major facilitator sup 99.7 4.6E-15 1E-19 143.9 22.7 177 67-270 13-189 (399)
26 PRK11652 emrD multidrug resist 99.7 5E-15 1.1E-19 143.6 22.9 174 65-274 4-177 (394)
27 PRK11551 putative 3-hydroxyphe 99.7 4.6E-15 1E-19 144.2 22.0 174 65-274 11-184 (406)
28 TIGR01299 synapt_SV2 synaptic 99.7 4.8E-15 1E-19 153.7 22.8 181 89-305 186-379 (742)
29 PRK11663 regulatory protein Uh 99.7 5.5E-15 1.2E-19 145.6 21.3 168 69-272 23-190 (434)
30 TIGR00886 2A0108 nitrite extru 99.7 9.4E-15 2E-19 139.6 21.5 159 71-264 3-171 (366)
31 PRK10091 MFS transport protein 99.7 7.7E-15 1.7E-19 141.9 20.9 173 69-277 3-175 (382)
32 PRK10642 proline/glycine betai 99.7 1.5E-14 3.3E-19 144.7 23.6 180 66-277 247-427 (490)
33 PRK12307 putative sialic acid 99.7 9.3E-15 2E-19 143.0 21.5 168 65-268 14-181 (426)
34 TIGR00711 efflux_EmrB drug res 99.7 5.4E-15 1.2E-19 146.8 19.6 172 71-278 4-175 (485)
35 TIGR00895 2A0115 benzoate tran 99.7 1.2E-14 2.7E-19 139.6 20.8 174 65-274 13-186 (398)
36 PRK03699 putative transporter; 99.7 2.8E-14 6E-19 138.6 23.4 175 65-275 3-178 (394)
37 PLN00028 nitrate transmembrane 99.7 3.6E-14 7.8E-19 141.5 24.7 179 61-276 27-215 (476)
38 PRK03893 putative sialic acid 99.6 2E-14 4.4E-19 143.4 22.4 168 65-268 16-183 (496)
39 TIGR00890 2A0111 Oxalate/Forma 99.6 1.4E-14 3E-19 138.0 20.0 155 85-276 19-173 (377)
40 PRK10406 alpha-ketoglutarate t 99.6 2.7E-14 5.8E-19 140.5 22.2 177 67-271 20-210 (432)
41 PF00854 PTR2: POT family; In 99.6 1.4E-15 3.1E-20 146.8 12.3 155 136-312 1-157 (372)
42 TIGR00893 2A0114 d-galactonate 99.6 1.1E-14 2.5E-19 139.0 18.3 152 91-277 15-166 (399)
43 PRK10473 multidrug efflux syst 99.6 5.3E-14 1.2E-18 136.3 22.8 167 73-275 7-173 (392)
44 PRK11043 putative transporter; 99.6 5E-14 1.1E-18 136.9 21.9 161 81-276 15-177 (401)
45 PRK09705 cynX putative cyanate 99.6 4E-14 8.7E-19 137.6 20.9 145 92-272 31-176 (393)
46 PRK11102 bicyclomycin/multidru 99.6 4.2E-14 9.1E-19 135.9 20.8 153 88-276 10-162 (377)
47 TIGR00879 SP MFS transporter, 99.6 2.1E-14 4.6E-19 140.9 18.4 140 104-275 70-212 (481)
48 PRK09874 drug efflux system pr 99.6 2.1E-13 4.6E-18 132.3 24.7 169 71-276 16-189 (408)
49 TIGR00897 2A0118 polyol permea 99.6 1.1E-13 2.5E-18 134.7 22.5 170 65-266 9-179 (402)
50 PRK10077 xylE D-xylose transpo 99.6 3.5E-14 7.6E-19 141.0 19.1 151 101-275 51-210 (479)
51 PRK10642 proline/glycine betai 99.6 9E-14 2E-18 139.1 21.9 175 68-270 15-203 (490)
52 TIGR00892 2A0113 monocarboxyla 99.6 8.4E-14 1.8E-18 138.1 21.1 150 93-278 42-192 (455)
53 cd06174 MFS The Major Facilita 99.6 8.6E-14 1.9E-18 130.9 20.2 168 72-275 2-169 (352)
54 PRK11195 lysophospholipid tran 99.6 1.8E-13 3.9E-18 133.1 22.6 162 71-272 5-166 (393)
55 PRK10133 L-fucose transporter; 99.6 3.6E-13 7.9E-18 132.9 24.9 154 67-253 24-177 (438)
56 TIGR00885 fucP L-fucose:H+ sym 99.6 3.2E-13 6.9E-18 132.2 23.4 171 72-275 6-202 (410)
57 COG2271 UhpC Sugar phosphate p 99.6 4E-14 8.6E-19 134.5 16.2 177 70-278 253-432 (448)
58 PRK03633 putative MFS family t 99.6 2.4E-13 5.3E-18 131.3 21.7 155 68-258 5-159 (381)
59 PRK09556 uhpT sugar phosphate 99.6 3.2E-14 7E-19 141.4 15.3 152 93-274 52-206 (467)
60 TIGR00899 2A0120 sugar efflux 99.6 2.5E-13 5.5E-18 130.0 21.0 169 76-277 4-173 (375)
61 PRK15034 nitrate/nitrite trans 99.6 4.2E-13 9.1E-18 132.2 22.8 160 57-249 20-183 (462)
62 TIGR00887 2A0109 phosphate:H+ 99.6 4E-13 8.6E-18 134.8 23.2 178 67-274 14-219 (502)
63 TIGR00881 2A0104 phosphoglycer 99.6 3.5E-14 7.7E-19 135.3 14.8 150 92-276 17-167 (379)
64 PRK11273 glpT sn-glycerol-3-ph 99.6 1.1E-13 2.4E-18 136.9 18.8 152 91-274 50-202 (452)
65 TIGR00805 oat sodium-independe 99.6 2.8E-14 6E-19 146.8 14.8 207 65-278 28-279 (633)
66 PRK10489 enterobactin exporter 99.6 1.8E-13 4E-18 133.7 19.4 171 75-276 23-193 (417)
67 TIGR00894 2A0114euk Na(+)-depe 99.6 7.1E-14 1.5E-18 138.6 16.7 145 99-276 70-215 (465)
68 PRK09556 uhpT sugar phosphate 99.6 3.2E-13 6.9E-18 134.3 20.7 176 69-277 258-446 (467)
69 PRK15011 sugar efflux transpor 99.5 1.7E-12 3.6E-17 126.1 24.2 174 69-278 216-389 (393)
70 PRK15075 citrate-proton sympor 99.5 5.8E-13 1.3E-17 131.1 21.2 175 65-267 11-199 (434)
71 TIGR00712 glpT glycerol-3-phos 99.5 2.2E-13 4.7E-18 134.3 17.7 153 92-276 49-202 (438)
72 PRK09952 shikimate transporter 99.5 6.7E-13 1.5E-17 130.9 21.2 178 65-270 18-210 (438)
73 COG2271 UhpC Sugar phosphate p 99.5 1.4E-13 3.1E-18 130.7 15.4 172 72-278 28-204 (448)
74 TIGR00806 rfc RFC reduced fola 99.5 1.5E-12 3.3E-17 127.0 21.5 152 90-278 46-201 (511)
75 PRK15011 sugar efflux transpor 99.5 3.5E-12 7.6E-17 123.9 23.7 174 70-278 16-192 (393)
76 TIGR00898 2A0119 cation transp 99.5 3.5E-13 7.7E-18 134.9 17.1 144 95-276 114-260 (505)
77 PRK08633 2-acyl-glycerophospho 99.5 1.7E-12 3.8E-17 142.2 23.9 156 68-255 8-165 (1146)
78 TIGR00883 2A0106 metabolite-pr 99.5 4.5E-13 9.9E-18 128.3 16.8 172 66-269 216-390 (394)
79 PRK09952 shikimate transporter 99.5 4.4E-12 9.5E-17 125.2 23.5 182 66-278 247-431 (438)
80 TIGR00882 2A0105 oligosacchari 99.5 1.6E-12 3.4E-17 126.3 19.7 177 70-276 3-179 (396)
81 PRK09528 lacY galactoside perm 99.5 1.5E-12 3.3E-17 127.4 19.6 181 69-279 10-190 (420)
82 KOG0254 Predicted transporter 99.5 1.9E-12 4.1E-17 130.3 20.5 159 106-303 90-252 (513)
83 PRK03699 putative transporter; 99.5 3.1E-12 6.8E-17 124.2 20.9 171 70-276 206-376 (394)
84 TIGR01299 synapt_SV2 synaptic 99.5 3.3E-12 7.1E-17 132.7 21.9 131 111-277 601-731 (742)
85 COG2223 NarK Nitrate/nitrite t 99.5 3E-12 6.4E-17 121.8 19.7 186 65-285 10-198 (417)
86 KOG0255 Synaptic vesicle trans 99.5 6.3E-13 1.4E-17 133.9 16.1 167 98-305 111-279 (521)
87 TIGR00890 2A0111 Oxalate/Forma 99.5 2.5E-12 5.5E-17 122.4 19.1 169 71-273 207-375 (377)
88 PRK05122 major facilitator sup 99.5 6E-12 1.3E-16 122.1 22.0 170 79-286 226-395 (399)
89 cd06174 MFS The Major Facilita 99.5 5.2E-12 1.1E-16 118.8 20.8 171 71-276 177-348 (352)
90 TIGR00896 CynX cyanate transpo 99.5 1.1E-12 2.3E-17 125.4 15.9 146 90-272 20-167 (355)
91 PRK11010 ampG muropeptide tran 99.5 1E-11 2.3E-16 124.3 23.1 177 67-277 10-192 (491)
92 PRK06814 acylglycerophosphoeth 99.5 7.5E-12 1.6E-16 137.3 23.9 133 105-271 52-186 (1140)
93 PRK03893 putative sialic acid 99.5 7.2E-12 1.6E-16 125.0 21.5 150 87-269 293-442 (496)
94 TIGR00899 2A0120 sugar efflux 99.5 1.2E-11 2.5E-16 118.5 21.9 159 83-277 213-371 (375)
95 PF06609 TRI12: Fungal trichot 99.5 2.3E-12 5.1E-17 129.8 17.3 150 90-276 64-213 (599)
96 TIGR00901 2A0125 AmpG-related 99.4 1.2E-11 2.6E-16 118.1 20.8 157 88-277 6-175 (356)
97 TIGR00893 2A0114 d-galactonate 99.4 1.4E-11 3E-16 117.6 20.9 179 69-276 215-395 (399)
98 PRK11273 glpT sn-glycerol-3-ph 99.4 1.3E-11 2.8E-16 122.3 21.0 177 69-277 253-432 (452)
99 PTZ00207 hypothetical protein; 99.4 3.7E-11 8.1E-16 121.6 24.2 173 65-272 24-197 (591)
100 PRK11902 ampG muropeptide tran 99.4 3.6E-11 7.8E-16 117.1 23.4 165 77-275 7-177 (402)
101 KOG3764 Vesicular amine transp 99.4 8.4E-13 1.8E-17 124.4 11.2 163 100-296 101-266 (464)
102 PRK11551 putative 3-hydroxyphe 99.4 2.2E-11 4.7E-16 118.4 21.6 167 73-275 224-391 (406)
103 PRK09705 cynX putative cyanate 99.4 4.2E-11 9.1E-16 116.4 23.5 173 71-279 207-380 (393)
104 PRK11663 regulatory protein Uh 99.4 1.7E-11 3.6E-16 120.8 20.8 178 70-279 244-423 (434)
105 TIGR00891 2A0112 putative sial 99.4 1.2E-11 2.7E-16 119.2 19.0 165 66-264 235-400 (405)
106 PRK09874 drug efflux system pr 99.4 2.1E-11 4.6E-16 118.3 20.5 164 80-278 230-396 (408)
107 PRK15075 citrate-proton sympor 99.4 3.4E-11 7.4E-16 118.6 21.9 160 68-259 237-398 (434)
108 PRK09528 lacY galactoside perm 99.4 8.2E-12 1.8E-16 122.3 17.2 160 83-277 237-400 (420)
109 PRK03633 putative MFS family t 99.4 5.4E-11 1.2E-15 115.0 22.1 152 84-274 215-366 (381)
110 TIGR00902 2A0127 phenyl propri 99.4 3.6E-11 7.8E-16 116.4 20.8 162 72-270 7-169 (382)
111 TIGR00889 2A0110 nucleoside tr 99.4 2.8E-11 6.1E-16 118.8 19.8 175 72-278 211-400 (418)
112 TIGR00880 2_A_01_02 Multidrug 99.4 4.6E-12 9.9E-17 103.1 12.0 130 113-277 6-135 (141)
113 COG0738 FucP Fucose permease [ 99.4 6.9E-11 1.5E-15 112.0 21.1 135 88-254 31-165 (422)
114 PRK03545 putative arabinose tr 99.4 1E-10 2.2E-15 113.4 22.9 171 72-278 208-378 (390)
115 KOG2532 Permease of the major 99.4 3E-11 6.5E-16 119.6 19.1 147 99-278 67-214 (466)
116 PRK10489 enterobactin exporter 99.4 4.7E-11 1E-15 116.7 20.3 159 85-278 239-397 (417)
117 TIGR00897 2A0118 polyol permea 99.4 1.2E-10 2.5E-15 113.6 22.7 176 70-278 223-399 (402)
118 PRK12382 putative transporter; 99.4 4.9E-11 1.1E-15 115.5 19.9 160 80-277 227-386 (392)
119 TIGR00792 gph sugar (Glycoside 99.4 2E-11 4.3E-16 119.7 17.4 174 79-279 9-193 (437)
120 TIGR00902 2A0127 phenyl propri 99.4 1.8E-10 3.8E-15 111.5 22.9 169 69-275 205-374 (382)
121 TIGR01301 GPH_sucrose GPH fami 99.4 1.2E-10 2.7E-15 115.4 22.1 196 71-283 6-221 (477)
122 PRK10406 alpha-ketoglutarate t 99.4 1.9E-10 4E-15 113.3 23.2 173 73-277 247-421 (432)
123 KOG0569 Permease of the major 99.4 3.8E-11 8.3E-16 118.2 18.1 159 108-300 63-225 (485)
124 PF11700 ATG22: Vacuole efflux 99.3 2.2E-10 4.7E-15 114.0 23.3 185 67-278 279-466 (477)
125 TIGR00892 2A0113 monocarboxyla 99.3 5.5E-11 1.2E-15 117.9 19.1 175 69-278 241-419 (455)
126 KOG4686 Predicted sugar transp 99.3 4.1E-11 8.9E-16 108.4 15.5 159 62-257 257-416 (459)
127 PRK11128 putative 3-phenylprop 99.3 1E-10 2.3E-15 113.1 19.5 155 79-273 14-172 (382)
128 PRK11010 ampG muropeptide tran 99.3 3.1E-10 6.8E-15 113.7 23.6 175 75-280 228-403 (491)
129 TIGR00883 2A0106 metabolite-pr 99.3 1.9E-10 4.2E-15 110.1 21.2 129 118-273 48-184 (394)
130 TIGR01272 gluP glucose/galacto 99.3 2E-10 4.3E-15 108.3 20.6 165 67-269 138-304 (310)
131 TIGR00879 SP MFS transporter, 99.3 1E-10 2.3E-15 114.7 19.4 163 92-278 306-468 (481)
132 TIGR00712 glpT glycerol-3-phos 99.3 1.2E-10 2.5E-15 114.9 18.2 178 70-278 252-431 (438)
133 PF05977 MFS_3: Transmembrane 99.3 6.8E-10 1.5E-14 111.6 23.7 152 99-280 39-190 (524)
134 COG2223 NarK Nitrate/nitrite t 99.3 9.2E-11 2E-15 111.8 15.8 183 68-279 217-400 (417)
135 COG2814 AraJ Arabinose efflux 99.3 9.7E-10 2.1E-14 105.5 21.5 181 68-284 210-390 (394)
136 PRK10504 putative transporter; 99.3 6.2E-10 1.3E-14 110.5 21.2 156 71-258 263-418 (471)
137 KOG2504 Monocarboxylate transp 99.3 1.5E-10 3.2E-15 116.0 16.2 179 65-281 40-222 (509)
138 TIGR00894 2A0114euk Na(+)-depe 99.3 6.6E-10 1.4E-14 110.3 20.6 179 66-277 258-447 (465)
139 TIGR02332 HpaX 4-hydroxyphenyl 99.2 2.2E-10 4.8E-15 112.2 16.7 165 69-268 242-409 (412)
140 PLN00028 nitrate transmembrane 99.2 3.6E-10 7.9E-15 112.8 18.5 175 71-280 254-433 (476)
141 TIGR00881 2A0104 phosphoglycer 99.2 2.1E-10 4.6E-15 109.2 15.6 161 70-262 217-379 (379)
142 PRK09669 putative symporter Ya 99.2 6.2E-10 1.3E-14 109.9 19.4 180 68-274 8-198 (444)
143 PRK10091 MFS transport protein 99.2 1.6E-09 3.4E-14 104.8 21.6 170 72-277 202-373 (382)
144 PRK12307 putative sialic acid 99.2 1.4E-09 3.1E-14 106.3 21.3 147 84-264 246-392 (426)
145 KOG2615 Permease of the major 99.2 1.3E-10 2.9E-15 109.1 12.9 132 87-254 46-181 (451)
146 TIGR00900 2A0121 H+ Antiporter 99.2 8E-10 1.7E-14 104.8 18.5 153 71-257 212-365 (365)
147 TIGR00895 2A0115 benzoate tran 99.2 4.8E-10 1E-14 107.6 17.2 149 68-252 249-397 (398)
148 PRK15402 multidrug efflux syst 99.2 3.4E-09 7.3E-14 103.2 23.1 165 71-266 217-381 (406)
149 TIGR00788 fbt folate/biopterin 99.2 1.8E-09 4E-14 107.5 21.5 170 72-274 29-203 (468)
150 TIGR00792 gph sugar (Glycoside 99.2 1.8E-09 3.8E-14 105.9 21.1 161 69-258 222-383 (437)
151 TIGR00711 efflux_EmrB drug res 99.2 5.6E-10 1.2E-14 110.9 17.6 156 70-256 256-411 (485)
152 PRK14995 methyl viologen resis 99.2 7E-10 1.5E-14 111.2 18.1 155 69-255 259-413 (495)
153 PRK11128 putative 3-phenylprop 99.2 3.3E-09 7.1E-14 102.6 22.1 165 70-272 206-371 (382)
154 TIGR00882 2A0105 oligosacchari 99.2 1.5E-09 3.3E-14 105.3 19.6 169 72-275 218-390 (396)
155 PRK10077 xylE D-xylose transpo 99.2 3.5E-09 7.6E-14 105.2 22.3 152 94-276 295-453 (479)
156 PRK15034 nitrate/nitrite trans 99.2 2.8E-09 6.1E-14 105.2 20.8 183 70-277 253-451 (462)
157 TIGR02718 sider_RhtX_FptX side 99.2 6.6E-09 1.4E-13 100.7 22.2 172 72-273 211-384 (390)
158 KOG2533 Permease of the major 99.2 5.6E-10 1.2E-14 111.0 14.7 150 97-281 73-228 (495)
159 TIGR00887 2A0109 phosphate:H+ 99.2 1.4E-09 3E-14 109.2 17.5 171 72-274 291-483 (502)
160 PRK10133 L-fucose transporter; 99.1 3.8E-09 8.2E-14 104.4 20.1 164 73-274 262-427 (438)
161 PRK10429 melibiose:sodium symp 99.1 4.1E-09 8.9E-14 105.1 19.9 174 74-275 11-196 (473)
162 TIGR00710 efflux_Bcr_CflA drug 99.1 9.9E-09 2.2E-13 98.4 21.9 161 72-264 209-370 (385)
163 TIGR00889 2A0110 nucleoside tr 99.1 9E-09 1.9E-13 101.1 21.8 160 72-273 5-173 (418)
164 PRK08633 2-acyl-glycerophospho 99.1 3.5E-09 7.6E-14 116.2 20.8 163 71-268 234-398 (1146)
165 TIGR00896 CynX cyanate transpo 99.1 4.6E-09 9.9E-14 100.3 18.6 155 70-259 198-353 (355)
166 PRK10054 putative transporter; 99.1 3.5E-09 7.6E-14 103.1 18.0 171 71-276 208-380 (395)
167 PRK11462 putative transporter; 99.1 1.4E-08 3E-13 101.0 22.4 180 72-278 12-202 (460)
168 PRK09848 glucuronide transport 99.1 4.9E-09 1.1E-13 103.6 19.1 162 70-258 229-391 (448)
169 PRK10213 nepI ribonucleoside t 99.1 2.2E-08 4.9E-13 97.4 23.2 164 71-270 218-381 (394)
170 COG2270 Permeases of the major 99.1 2.8E-09 6E-14 101.9 16.1 173 70-277 253-426 (438)
171 PF00083 Sugar_tr: Sugar (and 99.1 1.7E-12 3.6E-17 128.0 -6.9 134 106-271 47-183 (451)
172 PRK11902 ampG muropeptide tran 99.1 3.2E-08 6.9E-13 96.4 23.2 151 91-276 231-386 (402)
173 PRK06814 acylglycerophosphoeth 99.1 5.1E-09 1.1E-13 115.1 18.8 184 70-268 226-410 (1140)
174 KOG0253 Synaptic vesicle trans 99.1 8.6E-09 1.9E-13 96.7 17.3 185 93-316 101-286 (528)
175 PF05977 MFS_3: Transmembrane 99.1 1.9E-08 4.2E-13 101.2 20.9 164 78-276 227-390 (524)
176 PF13347 MFS_2: MFS/sugar tran 99.1 8.9E-10 1.9E-14 108.3 11.1 178 79-282 11-200 (428)
177 PRK11646 multidrug resistance 99.1 1.4E-08 3E-13 99.1 19.0 153 88-275 227-383 (400)
178 COG2807 CynX Cyanate permease 99.0 3E-08 6.6E-13 93.1 19.8 165 70-269 209-374 (395)
179 PF13347 MFS_2: MFS/sugar tran 99.0 8.4E-09 1.8E-13 101.4 17.1 162 69-258 225-387 (428)
180 TIGR02718 sider_RhtX_FptX side 99.0 7.5E-08 1.6E-12 93.3 22.5 177 71-279 3-183 (390)
181 TIGR00903 2A0129 major facilit 99.0 3.5E-08 7.6E-13 95.3 19.6 166 69-276 192-361 (368)
182 TIGR00898 2A0119 cation transp 99.0 1.4E-08 3.1E-13 101.6 17.4 129 113-276 363-491 (505)
183 PRK09848 glucuronide transport 99.0 5E-08 1.1E-12 96.5 20.8 157 68-250 7-172 (448)
184 COG2807 CynX Cyanate permease 99.0 6.5E-08 1.4E-12 90.9 20.0 161 81-279 24-185 (395)
185 PF05631 DUF791: Protein of un 99.0 1.5E-07 3.3E-12 88.7 21.6 155 93-278 57-214 (354)
186 TIGR00901 2A0125 AmpG-related 99.0 3.1E-08 6.7E-13 94.6 17.3 145 70-239 210-355 (356)
187 KOG0252 Inorganic phosphate tr 99.0 4.7E-09 1E-13 101.0 11.5 121 102-250 81-205 (538)
188 PRK10429 melibiose:sodium symp 98.9 7.5E-08 1.6E-12 96.0 19.8 165 69-258 231-396 (473)
189 PRK11195 lysophospholipid tran 98.9 1.5E-07 3.2E-12 91.7 21.2 155 85-275 221-375 (393)
190 KOG2532 Permease of the major 98.9 3.4E-08 7.3E-13 97.9 16.1 182 68-278 257-445 (466)
191 PRK11102 bicyclomycin/multidru 98.9 3.4E-07 7.4E-12 87.8 22.3 146 72-249 197-343 (377)
192 PF07690 MFS_1: Major Facilita 98.9 2E-08 4.3E-13 94.8 13.5 143 72-246 209-352 (352)
193 KOG0569 Permease of the major 98.9 2.6E-07 5.7E-12 91.3 21.0 186 65-278 265-452 (485)
194 KOG2325 Predicted transporter/ 98.9 3.8E-08 8.2E-13 96.8 14.9 187 61-279 26-228 (488)
195 PRK11043 putative transporter; 98.9 5.8E-07 1.3E-11 87.3 23.1 148 80-259 214-361 (401)
196 PRK09669 putative symporter Ya 98.9 2E-07 4.3E-12 92.1 20.0 159 72-258 232-391 (444)
197 PRK10473 multidrug efflux syst 98.9 5.6E-07 1.2E-11 87.1 22.6 69 87-156 221-289 (392)
198 COG2211 MelB Na+/melibiose sym 98.8 2.8E-07 6.2E-12 90.4 19.4 160 68-254 11-174 (467)
199 KOG2504 Monocarboxylate transp 98.8 4.6E-08 1E-12 98.1 14.3 176 69-280 298-476 (509)
200 KOG0253 Synaptic vesicle trans 98.8 1E-07 2.2E-12 89.6 15.4 150 65-249 322-490 (528)
201 TIGR00885 fucP L-fucose:H+ sym 98.8 3.8E-07 8.3E-12 89.4 19.3 163 71-271 234-403 (410)
202 PRK11462 putative transporter; 98.8 1.4E-06 3.1E-11 86.6 22.4 158 73-258 232-390 (460)
203 COG2211 MelB Na+/melibiose sym 98.8 9.8E-07 2.1E-11 86.6 19.8 162 70-258 237-399 (467)
204 PF01306 LacY_symp: LacY proto 98.7 1.7E-06 3.7E-11 84.0 20.8 178 67-279 218-399 (412)
205 PF01306 LacY_symp: LacY proto 98.7 4.7E-07 1E-11 87.9 16.7 73 69-142 7-79 (412)
206 TIGR00886 2A0108 nitrite extru 98.7 1.8E-07 3.9E-12 89.2 12.9 139 71-241 227-365 (366)
207 PRK11652 emrD multidrug resist 98.7 5.8E-06 1.2E-10 80.1 22.3 138 89-259 227-364 (394)
208 PF03825 Nuc_H_symport: Nucleo 98.6 7E-06 1.5E-10 80.2 21.9 173 76-278 214-393 (400)
209 KOG2563 Permease of the major 98.6 1.8E-06 3.8E-11 83.4 16.9 165 62-255 38-202 (480)
210 PF06813 Nodulin-like: Nodulin 98.6 7.2E-06 1.6E-10 74.6 19.6 151 67-249 1-151 (250)
211 TIGR00924 yjdL_sub1_fam amino 98.6 2.5E-06 5.5E-11 85.2 18.2 187 70-281 273-469 (475)
212 PF03825 Nuc_H_symport: Nucleo 98.6 1.5E-05 3.3E-10 77.8 22.5 116 74-218 7-122 (400)
213 KOG3626 Organic anion transpor 98.5 1.4E-06 3E-11 89.3 14.3 209 69-284 96-347 (735)
214 PRK15403 multidrug efflux syst 98.5 1.7E-05 3.7E-10 77.7 21.4 168 70-269 219-386 (413)
215 PF03137 OATP: Organic Anion T 98.5 1.3E-08 2.9E-13 102.7 -0.9 202 76-285 10-255 (539)
216 COG0477 ProP Permeases of the 98.5 1.9E-05 4.1E-10 71.3 18.8 142 96-269 28-174 (338)
217 COG0738 FucP Fucose permease [ 98.5 1.5E-05 3.3E-10 76.2 18.3 155 71-263 238-392 (422)
218 KOG2533 Permease of the major 98.4 3.3E-06 7.1E-11 84.3 12.6 165 70-267 274-443 (495)
219 PRK10207 dipeptide/tripeptide 98.4 1.6E-05 3.4E-10 79.8 17.5 178 79-281 279-477 (489)
220 KOG3764 Vesicular amine transp 98.4 9.5E-07 2.1E-11 84.0 7.9 180 71-278 272-452 (464)
221 PF03209 PUCC: PUCC protein; 98.3 3.8E-05 8.3E-10 73.8 18.0 142 96-257 6-153 (403)
222 PF03209 PUCC: PUCC protein; 98.3 7.5E-05 1.6E-09 71.8 20.0 154 91-275 230-393 (403)
223 PRK09584 tppB putative tripept 98.3 4.3E-05 9.4E-10 76.9 19.0 174 79-278 282-477 (500)
224 PF03092 BT1: BT1 family; Int 98.3 3.2E-05 6.9E-10 76.4 17.7 155 92-275 12-170 (433)
225 KOG2816 Predicted transporter 98.3 2E-05 4.3E-10 78.2 15.3 155 88-282 40-201 (463)
226 PF06609 TRI12: Fungal trichot 98.3 0.00015 3.2E-09 73.8 21.1 152 66-250 307-462 (599)
227 TIGR00788 fbt folate/biopterin 98.2 7E-06 1.5E-10 81.9 10.1 136 97-257 280-415 (468)
228 TIGR01301 GPH_sucrose GPH fami 98.2 0.0002 4.3E-09 71.4 19.8 205 65-282 254-473 (477)
229 PF11700 ATG22: Vacuole efflux 98.1 0.00072 1.6E-08 67.6 22.8 136 108-270 73-237 (477)
230 KOG0254 Predicted transporter 98.1 0.00023 4.9E-09 71.9 17.8 91 65-157 290-380 (513)
231 PF12832 MFS_1_like: MFS_1 lik 98.0 8.4E-05 1.8E-09 55.0 9.8 67 78-146 9-75 (77)
232 TIGR00805 oat sodium-independe 97.9 0.00048 1E-08 71.4 17.9 82 70-152 331-415 (633)
233 KOG3762 Predicted transporter 97.9 0.00011 2.3E-09 72.8 10.9 148 98-280 399-547 (618)
234 PF00083 Sugar_tr: Sugar (and 97.9 4.4E-08 9.5E-13 96.6 -12.8 178 69-275 252-431 (451)
235 KOG0252 Inorganic phosphate tr 97.9 1.8E-05 3.9E-10 76.7 5.5 177 69-277 304-495 (538)
236 KOG4686 Predicted sugar transp 97.9 1.4E-06 3E-11 79.4 -2.2 155 70-256 45-199 (459)
237 PF05978 UNC-93: Ion channel r 97.8 0.0012 2.6E-08 55.7 15.1 107 107-249 39-145 (156)
238 PTZ00207 hypothetical protein; 97.7 0.00094 2E-08 68.2 15.7 171 70-278 354-550 (591)
239 PRK03612 spermidine synthase; 97.6 0.015 3.3E-07 58.8 22.4 149 80-259 25-176 (521)
240 KOG0637 Sucrose transporter an 97.6 7.8E-05 1.7E-09 72.3 5.4 166 69-252 32-202 (498)
241 COG2270 Permeases of the major 97.6 0.0025 5.3E-08 61.7 15.3 128 90-249 36-171 (438)
242 TIGR01272 gluP glucose/galacto 97.6 0.00051 1.1E-08 64.7 10.5 84 186-275 9-108 (310)
243 KOG0255 Synaptic vesicle trans 97.5 0.013 2.9E-07 59.0 20.0 146 69-254 322-467 (521)
244 KOG2615 Permease of the major 97.5 0.0017 3.8E-08 61.9 12.0 153 68-254 259-413 (451)
245 KOG2563 Permease of the major 97.4 0.0011 2.4E-08 64.4 10.4 184 70-286 267-456 (480)
246 TIGR00769 AAA ADP/ATP carrier 97.4 0.048 1E-06 54.4 21.6 170 67-254 5-190 (472)
247 PRK15462 dipeptide/tripeptide 97.3 0.026 5.6E-07 56.7 19.5 120 107-252 310-437 (493)
248 PF01770 Folate_carrier: Reduc 97.2 0.034 7.4E-07 54.2 18.1 153 90-278 24-180 (412)
249 KOG2816 Predicted transporter 97.0 0.0083 1.8E-07 59.7 11.7 152 67-253 238-390 (463)
250 KOG4332 Predicted sugar transp 96.9 0.0019 4E-08 59.0 6.0 97 90-216 57-154 (454)
251 PF06779 DUF1228: Protein of u 96.7 0.031 6.8E-07 41.9 9.9 65 91-156 13-77 (85)
252 PF03137 OATP: Organic Anion T 96.6 0.00055 1.2E-08 69.5 0.0 182 69-256 305-515 (539)
253 KOG3626 Organic anion transpor 96.4 0.072 1.6E-06 55.4 13.7 81 70-150 393-475 (735)
254 PF06963 FPN1: Ferroportin1 (F 96.3 0.31 6.7E-06 48.1 17.1 151 72-248 261-411 (432)
255 KOG3098 Uncharacterized conser 96.3 0.52 1.1E-05 46.8 18.6 117 113-246 287-405 (461)
256 KOG3098 Uncharacterized conser 96.1 0.091 2E-06 52.0 12.5 80 111-220 56-135 (461)
257 COG3104 PTR2 Dipeptide/tripept 96.1 0.22 4.8E-06 49.4 14.9 89 185-279 392-486 (498)
258 TIGR00926 2A1704 Peptide:H+ sy 95.9 0.29 6.3E-06 51.0 15.7 185 100-308 15-207 (654)
259 PF06963 FPN1: Ferroportin1 (F 95.8 2.3 5E-05 42.0 20.9 187 72-275 5-195 (432)
260 KOG1330 Sugar transporter/spin 95.4 0.21 4.6E-06 49.1 11.8 138 96-259 274-417 (493)
261 KOG3762 Predicted transporter 95.3 0.017 3.7E-07 57.5 3.9 67 87-155 29-96 (618)
262 KOG2325 Predicted transporter/ 94.7 0.1 2.2E-06 51.9 7.4 197 66-272 259-467 (488)
263 KOG3574 Acetyl-CoA transporter 94.3 1.2 2.7E-05 43.0 13.3 159 64-249 26-189 (510)
264 PF02487 CLN3: CLN3 protein; 94.0 0.64 1.4E-05 45.4 11.1 63 186-254 334-396 (402)
265 TIGR00769 AAA ADP/ATP carrier 93.7 8.4 0.00018 38.6 22.1 71 197-272 276-346 (472)
266 KOG3097 Predicted membrane pro 93.1 8.1 0.00018 36.7 16.2 153 61-250 21-182 (390)
267 PF02487 CLN3: CLN3 protein; 92.5 3.3 7.2E-05 40.4 13.5 78 110-217 64-141 (402)
268 PF03219 TLC: TLC ATP/ADP tran 92.0 13 0.00027 37.5 17.4 169 66-254 21-205 (491)
269 PRK10263 DNA translocase FtsK; 91.5 4 8.6E-05 45.3 13.8 31 240-270 142-172 (1355)
270 PF03092 BT1: BT1 family; Int 90.7 1.2 2.7E-05 43.9 8.8 127 102-257 252-382 (433)
271 PF03219 TLC: TLC ATP/ADP tran 90.7 20 0.00044 36.1 23.4 73 197-274 292-364 (491)
272 COG3202 ATP/ADP translocase [E 89.9 23 0.00049 35.5 17.8 171 65-254 23-209 (509)
273 KOG1479 Nucleoside transporter 88.9 24 0.00053 34.5 17.5 32 187-219 117-148 (406)
274 KOG4112 Signal peptidase subun 85.2 2.5 5.5E-05 31.8 5.1 57 228-287 22-78 (101)
275 TIGR00806 rfc RFC reduced fola 85.1 15 0.00031 37.0 12.0 97 107-236 300-396 (511)
276 KOG4332 Predicted sugar transp 84.7 7.4 0.00016 36.1 9.0 136 107-274 284-425 (454)
277 TIGR00880 2_A_01_02 Multidrug 84.2 17 0.00038 28.1 11.2 45 107-152 89-133 (141)
278 PF05631 DUF791: Protein of un 83.9 42 0.0009 32.2 18.6 54 195-248 247-301 (354)
279 TIGR00939 2a57 Equilibrative N 83.8 13 0.00029 36.8 11.2 55 187-247 372-426 (437)
280 TIGR00939 2a57 Equilibrative N 83.5 49 0.0011 32.8 15.5 32 186-218 105-136 (437)
281 KOG0637 Sucrose transporter an 83.4 3.3 7.1E-05 41.0 6.6 90 64-154 274-380 (498)
282 COG3619 Predicted membrane pro 80.6 42 0.00092 30.0 17.6 27 108-135 58-84 (226)
283 PF01770 Folate_carrier: Reduc 80.5 47 0.001 32.6 13.4 97 107-236 287-383 (412)
284 COG5336 Uncharacterized protei 77.5 11 0.00023 29.5 6.3 26 121-146 58-83 (116)
285 PF13000 Acatn: Acetyl-coenzym 75.8 95 0.0021 31.5 14.1 56 193-254 411-466 (544)
286 TIGR01667 YCCS_YHJK integral m 73.6 56 0.0012 34.6 12.6 28 129-156 50-77 (701)
287 TIGR01666 YCCS hypothetical me 72.2 58 0.0013 34.4 12.3 48 129-203 50-97 (704)
288 PF06645 SPC12: Microsomal sig 71.5 12 0.00026 27.4 5.1 53 231-286 10-62 (76)
289 PF11947 DUF3464: Protein of u 70.2 25 0.00054 29.5 7.3 48 188-244 98-145 (153)
290 PF01733 Nucleoside_tran: Nucl 69.1 1.7 3.7E-05 40.8 0.3 34 187-220 248-281 (309)
291 KOG1237 H+/oligopeptide sympor 67.8 21 0.00045 36.7 7.8 67 184-256 455-521 (571)
292 COG3202 ATP/ADP translocase [E 63.4 1.7E+02 0.0037 29.5 22.2 201 65-277 145-370 (509)
293 PF09527 ATPase_gene1: Putativ 58.0 54 0.0012 22.0 6.8 31 113-143 8-38 (55)
294 KOG1278 Endosomal membrane pro 57.8 1.2E+02 0.0027 30.8 10.6 31 102-132 356-386 (628)
295 KOG1479 Nucleoside transporter 57.8 30 0.00066 33.8 6.5 108 91-220 265-376 (406)
296 COG4262 Predicted spermidine s 54.6 2.1E+02 0.0046 27.8 15.3 118 100-247 38-161 (508)
297 PF07672 MFS_Mycoplasma: Mycop 52.4 1.9E+02 0.0042 26.6 10.9 33 108-140 144-176 (267)
298 PF12273 RCR: Chitin synthesis 51.4 8.1 0.00018 31.3 1.3 11 259-269 1-11 (130)
299 PF12805 FUSC-like: FUSC-like 51.3 2E+02 0.0043 26.5 11.4 17 187-203 23-39 (284)
300 KOG3574 Acetyl-CoA transporter 50.6 1.9E+02 0.004 28.6 10.3 57 196-258 378-434 (510)
301 PF01528 Herpes_glycop: Herpes 46.5 1.2E+02 0.0026 29.4 8.5 24 130-153 197-220 (374)
302 TIGR02230 ATPase_gene1 F0F1-AT 45.7 92 0.002 24.1 6.2 18 120-137 57-74 (100)
303 KOG3810 Micronutrient transpor 45.0 1.8E+02 0.0038 28.3 9.1 96 108-236 274-369 (433)
304 PF13000 Acatn: Acetyl-coenzym 43.2 3.8E+02 0.0082 27.3 11.7 26 227-252 152-177 (544)
305 PF06912 DUF1275: Protein of u 42.7 2.3E+02 0.0049 24.6 19.6 20 109-128 50-69 (209)
306 PF10777 YlaC: Inner membrane 41.5 99 0.0022 25.7 6.0 38 250-287 53-90 (155)
307 COG3086 RseC Positive regulato 38.5 1.6E+02 0.0035 24.4 6.8 16 120-136 87-102 (150)
308 COG2233 UraA Xanthine/uracil p 36.3 4.5E+02 0.0098 26.2 11.3 58 92-150 36-94 (451)
309 PF13829 DUF4191: Domain of un 34.9 1.3E+02 0.0028 26.9 6.3 44 233-279 29-72 (224)
310 COG1268 BioY Uncharacterized c 31.1 2E+02 0.0044 24.9 6.7 21 112-132 89-109 (184)
311 PF00854 PTR2: POT family; In 30.3 3.5E+02 0.0076 25.6 9.2 74 81-155 43-121 (372)
312 PRK11469 hypothetical protein; 29.5 3.7E+02 0.0081 23.2 11.6 52 101-153 130-182 (188)
313 PF08566 Pam17: Mitochondrial 29.3 1.1E+02 0.0024 26.1 4.7 32 97-128 69-102 (173)
314 PRK02237 hypothetical protein; 29.3 1.5E+02 0.0032 23.3 5.0 48 105-153 56-103 (109)
315 COG5336 Uncharacterized protei 28.2 3E+02 0.0065 21.7 7.4 18 239-256 52-69 (116)
316 TIGR02916 PEP_his_kin putative 27.8 7.2E+02 0.016 26.0 17.1 15 243-257 242-256 (679)
317 PF07672 MFS_Mycoplasma: Mycop 27.4 74 0.0016 29.2 3.6 55 227-281 4-64 (267)
318 TIGR02230 ATPase_gene1 F0F1-AT 25.5 3.2E+02 0.0069 21.1 7.7 20 238-257 52-71 (100)
319 TIGR00927 2A1904 K+-dependent 24.7 5.1E+02 0.011 28.6 9.4 22 91-112 954-975 (1096)
320 TIGR00836 amt ammonium transpo 24.6 6.7E+02 0.015 24.6 10.8 74 70-151 195-268 (403)
321 PF03988 DUF347: Repeat of Unk 23.8 2.4E+02 0.0051 19.0 5.5 22 238-259 7-28 (55)
322 PRK10692 hypothetical protein; 23.5 1.3E+02 0.0028 22.5 3.6 22 134-155 2-23 (92)
323 PF06779 DUF1228: Protein of u 23.4 3.2E+02 0.0069 20.4 8.4 58 198-264 5-62 (85)
324 KOG3827 Inward rectifier K+ ch 22.1 1.4E+02 0.0031 28.8 4.5 40 65-104 59-98 (400)
325 PF02694 UPF0060: Uncharacteri 21.3 4.1E+02 0.0088 20.8 8.6 50 104-154 53-102 (107)
326 PTZ00370 STEVOR; Provisional 20.9 4.9E+02 0.011 24.2 7.5 6 212-217 218-223 (296)
327 PF03213 Pox_P35: Poxvirus P35 20.7 2.3E+02 0.005 26.7 5.4 17 116-132 253-269 (325)
328 COG4232 Thiol:disulfide interc 20.2 9.6E+02 0.021 24.7 14.3 33 187-219 325-357 (569)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-33 Score=281.61 Aligned_cols=292 Identities=42% Similarity=0.682 Sum_probs=260.2
Q ss_pred CccccCCCCCcccc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 018406 50 TPVNVHGKPIADLS---KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGG 126 (356)
Q Consensus 50 ~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G 126 (356)
...|+++.|. ... ++++|++..++++.+.++++++|++..+++.|++.++|.+...++..++.|.+...+.+++++
T Consensus 16 ~~~d~~~~~~-~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~ 94 (571)
T KOG1237|consen 16 TSVDYRGPLL-GSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGA 94 (571)
T ss_pred ceeeccCCcc-cccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566666665 554 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhh
Q 018406 127 FLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRP 206 (356)
Q Consensus 127 ~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~ 206 (356)
+++|.|+||++++.++.+++.+|++++.++...|.+.|. .| ........|+.++..+...++.++.++++|.|+.++
T Consensus 95 ~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~ 171 (571)
T KOG1237|consen 95 FLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRP 171 (571)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCC
Confidence 999999999999999999999999999999999988886 54 111123469999999999999999999999999999
Q ss_pred hhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccccc
Q 018406 207 CVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (356)
Q Consensus 207 ~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (356)
+..++++|||++..+.++.++.++|+|+|+..++|.+++.++..|++++.||.++|.++.+++++++++|+.+.+.|+++
T Consensus 172 ~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~ 251 (571)
T KOG1237|consen 172 CLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYK 251 (571)
T ss_pred cchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEee
Confidence 99999999999888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccccCCCCcccccccccCCccccccCCccccCCCCceeccccccccC
Q 018406 287 LPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFSLCEPADVWTR 352 (356)
Q Consensus 287 ~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (356)
+|.++|...+.+|++++.+||+...+.++++ +.+ .........+++.|||+|||+++++
T Consensus 252 ~p~gsp~t~i~~Vlvaa~~k~~~~~~~~~~~-~~~------~~~~~~~~~~t~~f~~l~kaa~~~~ 310 (571)
T KOG1237|consen 252 KPRGSPKTRIGQVLVAAAFKRKAVVSLDPEE-LYY------DCTDSVAIEGTKPFRFLDKAALKTS 310 (571)
T ss_pred CCCCCchhHHHHHHHHHHHHHhccCCCcchh-ccc------cccccccccCCcccchhhHhhccCC
Confidence 9999999999999999999999988887555 311 1112223345889999999999865
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.92 E-value=1.5e-24 Score=209.05 Aligned_cols=192 Identities=21% Similarity=0.396 Sum_probs=178.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH----KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~----~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~ 140 (356)
-+++|.++.++.++++|+++|||+...+..|++.+++ ++.+++..+.+.|....++.+++|||++||++|+|+++.
T Consensus 17 f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~ 96 (498)
T COG3104 17 FGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIV 96 (498)
T ss_pred CCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 4578899999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (356)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~ 220 (356)
++.+++.+|.++++.+.. .....++++++++++|.|+.+++..++++|++|+++
T Consensus 97 lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D 150 (498)
T COG3104 97 LGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD 150 (498)
T ss_pred HHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence 999999999999887520 135679999999999999999999999999999888
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccccc
Q 018406 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (356)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (356)
+ ||.+.++++|++.|+|+.++|++.+++.+++||+.+|.+.++-+.++++.+.++++++...
T Consensus 151 p----rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~ 212 (498)
T COG3104 151 P----RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGI 212 (498)
T ss_pred c----ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCC
Confidence 5 5899999999999999999999999999999999999999999999999999998877544
No 3
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.92 E-value=1.9e-23 Score=208.44 Aligned_cols=190 Identities=17% Similarity=0.305 Sum_probs=167.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+++||.++.+++.++++++++|++..+++.|+++++|++..+++++.+.+.+..++.++++|+++||++|||++++++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999994499999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
++.++.+++.++.. ....++++++++++|.|+..++..++++|+||+++
T Consensus 90 ~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~---- 138 (489)
T PRK10207 90 VLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD---- 138 (489)
T ss_pred HHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc----
Confidence 99999998887531 13346688999999999999999999999999765
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcccccc
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 285 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~ 285 (356)
+||++.+++++++.++|+.++|.+++++.++.||+++|++..+.++++++.+...++.+++
T Consensus 139 ~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~ 199 (489)
T PRK10207 139 PRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKD 199 (489)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcc
Confidence 2468889999999999999999999999999999999999877666666666666555543
No 4
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=99.89 E-value=1.5e-21 Score=199.58 Aligned_cols=204 Identities=27% Similarity=0.555 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018406 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (356)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~ 162 (356)
++|||+...+..|+++.+|++.+.+..+...+.....+.++++|+++|+++||+++++++.+++.+|.+++++....+..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999888875421111
Q ss_pred CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 018406 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~ 242 (356)
. ..+....+++++++++|.|++.+++.++++|||++++ ++++.++++|+|++.|+|+
T Consensus 81 ~--------------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGS 137 (654)
T TIGR00926 81 H--------------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGS 137 (654)
T ss_pred c--------------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHH
Confidence 1 1234557788999999999999999999999998643 2358999999999999999
Q ss_pred HHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhHHHHHHHHHHHhcccc
Q 018406 243 IVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHA 309 (356)
Q Consensus 243 ~i~p~i~~~i~~~~-------gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~ 309 (356)
.+++++.+++.+.. +|.++|.+++++++++++++..+++++++.++.+++..++.+++..+++++..
T Consensus 138 lis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~ 211 (654)
T TIGR00926 138 LISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFS 211 (654)
T ss_pred HHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhc
Confidence 99999999998553 69999999999999999999999999988888888888888999888876544
No 5
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.88 E-value=2.4e-21 Score=192.98 Aligned_cols=192 Identities=18% Similarity=0.252 Sum_probs=167.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~ 142 (356)
.+++|.++.+++.++++++++|++..+++.|++++ +|++..+++.+.+.+.++..++++++|+++||++|||+++.++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 35667889999999999999999999999999988 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChh
Q 018406 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (356)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~ 222 (356)
.+++.++.++++++. +...+++++++.|+|.|+..++..++++|+++++++
T Consensus 86 ~~~~~~g~~~~~~~~----------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~- 136 (475)
T TIGR00924 86 GIVLMLGHFMLAMSI----------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM- 136 (475)
T ss_pred HHHHHHHHHHHHhcc----------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc-
Confidence 999999988877642 356677889999999999999999999999986542
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcccccccC
Q 018406 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL 287 (356)
Q Consensus 223 ~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~ 287 (356)
.+|++.++++|++.++|++++|.+++++.++.||++.|.+.++.+++++++++..++.+++.+
T Consensus 137 --~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~ 199 (475)
T TIGR00924 137 --PRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIG 199 (475)
T ss_pred --ccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCC
Confidence 147889999999999999999999999999999999999988777777666666666555443
No 6
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.88 E-value=6.3e-21 Score=188.98 Aligned_cols=188 Identities=20% Similarity=0.336 Sum_probs=162.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
++++.++.+++.++++++++|++...++.|+++.+|++..+++.+...+.+...++++++|+++||++|||++++++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
..++.+++..... ....++++..+.++|.|...++..++++|+||++++
T Consensus 86 ~~lg~lll~~~~~---------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~---- 134 (493)
T PRK15462 86 MAIGHVVLGASEI---------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP---- 134 (493)
T ss_pred HHHHHHHHHHhhc---------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----
Confidence 9998876653210 123355566677788888889999999999997642
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccc
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~ 284 (356)
+|.+.++++|...++|++++|.+.+++.+..||+++|.+.++.++++++.++..++.+.
T Consensus 135 ~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 135 RRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred cccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 48889999999999999999999999999999999999988777777777776665543
No 7
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.86 E-value=3.6e-20 Score=185.56 Aligned_cols=188 Identities=21% Similarity=0.347 Sum_probs=160.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
++++.++.+++.++++++++|++..+++.|+++++|++..+++.+.+.+.+.....++++|+++||++|||++++++.++
T Consensus 18 ~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 18 KQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999888888888888889999999944999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
+.++.+++.++.. ....+++++++.|+|.|...++..++++|+||+++ .
T Consensus 98 ~~ig~~l~~~~~~---------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~----~ 146 (500)
T PRK09584 98 LAIGYALVAWSGH---------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD----P 146 (500)
T ss_pred HHHHHHHHHHhcc---------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc----h
Confidence 9999887776421 24567788899999999999999999999998654 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccc
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~ 284 (356)
++++.++++|++.++|+.++|.+.+++.++.||++.|.+.++.++++++.++...+.++
T Consensus 147 ~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~ 205 (500)
T PRK09584 147 RLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVK 205 (500)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 46678889999999999999999999999999999999988776666666555544443
No 8
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.6e-18 Score=165.70 Aligned_cols=179 Identities=18% Similarity=0.232 Sum_probs=159.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+..++.+..+.++.+++++.-|.+...+ .-.++.+|.++...+++.+++.+...+.+|+.|+|+||| -|++++.+|.+
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~ 106 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF 106 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence 3456678888999999999999887743 446788999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
++.++.+..+++. ..+++.+.|.+.|+|.+...+..+++++|.|++++
T Consensus 107 iW~~Av~~~~fs~----------------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~---- 154 (493)
T KOG1330|consen 107 IWTLAVFASGFSN----------------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK---- 154 (493)
T ss_pred HHHHHHHHHHHHH----------------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchh----
Confidence 9999999988863 58999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhh
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~~ 279 (356)
|++.++++|++..+|+++|.++++++.+..+ |||+|+..+++.++..++.++.
T Consensus 155 --Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 155 --RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred --hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence 9999999999999999999999999988877 9999999888866655554443
No 9
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.75 E-value=1.2e-16 Score=156.25 Aligned_cols=176 Identities=15% Similarity=0.084 Sum_probs=148.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+.+|+.++.+.+..++..+....+.. ...++++++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~ 81 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMV 81 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHH
Confidence 44677777777777777776665544 44588999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
++.++.+++.++. +...++++|++.|++.++..+....+++|.+|+++
T Consensus 82 ~~~~~~~~~~~~~----------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~---- 129 (412)
T TIGR02332 82 LWGIASTATMFAT----------------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF---- 129 (412)
T ss_pred HHHHHHHHHHHhc----------------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH----
Confidence 9999988887652 47788999999999999988888889999999766
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------hcchhHHHHHHHHHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~------~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
|+...++++.+..+|..+++.+++++.+ ..|||+.|++.++..++..++.
T Consensus 130 --rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 130 --RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMT 185 (412)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998864 3589999998776655444333
No 10
>PRK03545 putative arabinose transporter; Provisional
Probab=99.75 E-value=2.8e-16 Score=152.24 Aligned_cols=175 Identities=12% Similarity=0.081 Sum_probs=144.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
++|..++.+.+..++.....+... .+...+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPV-GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHH-cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 456556666666665444444332 233467789999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
+.++.+.+.++. +.+.++++|++.|++.+...+...+++.|.+|+++
T Consensus 84 ~~~~~~~~~~~~----------------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~----- 130 (390)
T PRK03545 84 FIASHVLSALAW----------------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK----- 130 (390)
T ss_pred HHHHHHHHHHhc----------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh-----
Confidence 999888777652 57888999999999998888888999999999776
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
|++.++++..+.++|..++|.+++++.+..||++.|++.+++.++..+..
T Consensus 131 -r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 131 -KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL 180 (390)
T ss_pred -hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998999999998877665554433
No 11
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.74 E-value=4.5e-16 Score=152.37 Aligned_cols=149 Identities=15% Similarity=0.095 Sum_probs=128.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccccc
Q 018406 95 FMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQ 174 (356)
Q Consensus 95 yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (356)
.+.+++|.+....++.++++.++..++.+++|+++||+ |||++++++.+++.++.+++.++.
T Consensus 41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~----------------- 102 (413)
T PRK15403 41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT----------------- 102 (413)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC-----------------
Confidence 36678999999999999999999999999999999998 999999999999988888777642
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (356)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~ 254 (356)
+...++++|++.|++.+...+...+++.|.+++++ +++.+++++....+|..++|.+++++.+
T Consensus 103 -----------~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~ 165 (413)
T PRK15403 103 -----------SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMH 165 (413)
T ss_pred -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999988766677788899999766 7888899999999999999999999988
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHh
Q 018406 255 EHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 255 ~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
..||++.|++.+++.++.++..+.
T Consensus 166 ~~gw~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 166 FVHWKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999887776655544333
No 12
>PRK10054 putative transporter; Provisional
Probab=99.74 E-value=5.2e-16 Score=151.04 Aligned_cols=175 Identities=15% Similarity=0.138 Sum_probs=147.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
+.+|.++.+++..++...+.+.+..+++.|+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 3455678888888898889888888999999999999999999999999999999999999999998 999999999988
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
..++.+++.+.. +.+.+++++.+.+.+.+...+...++.+|.+++++
T Consensus 83 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 129 (395)
T PRK10054 83 FASGFIAIPLVN----------------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS----- 129 (395)
T ss_pred HHHHHHHHHHHh----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH-----
Confidence 888777666542 45666677777777777777888899999998765
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
|++.+++.+...++|.+++|.+++++.+ .+|+..|++.+++.++.+++.
T Consensus 130 -~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~ 178 (395)
T PRK10054 130 -KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFI 178 (395)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998875 689999998777766554433
No 13
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.73 E-value=5.8e-16 Score=155.10 Aligned_cols=178 Identities=15% Similarity=0.060 Sum_probs=148.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~ 146 (356)
+|..++.+.+..++..+....+...++. +.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~ 81 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLF 81 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 4666777777777777777666665554 5678999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
.++.+++..+. +.+.++++|++.|+|.++..+.....+.+.+++++ +
T Consensus 82 ~~~~~~~~~a~----------------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~ 128 (495)
T PRK14995 82 GLASLAAAFSP----------------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----Q 128 (495)
T ss_pred HHHHHHHHHcC----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----H
Confidence 99998888752 58889999999999999988887777878875432 3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (356)
|+.+++++.....+|..++|.+++++.++.||||.|++...+.++.+++....
T Consensus 129 r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~ 181 (495)
T PRK14995 129 RNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARY 181 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999998766655554444333
No 14
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.73 E-value=9.1e-16 Score=149.27 Aligned_cols=177 Identities=13% Similarity=0.124 Sum_probs=149.1
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (356)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~ 141 (356)
..+|..|+.+..+....++.....|.....++. +.+++|++..+.+..++.+.++..++.++.|+++||+ |||+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~ 90 (394)
T PRK10213 13 AITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVIL 90 (394)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHH
Confidence 344567777677766666666666655555554 5678999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (356)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~ 221 (356)
+.+++.++.+++.++. +.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 91 ~~~~~~~~~~~~~~~~----------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~- 141 (394)
T PRK10213 91 FAVLLTLSCLLVSFAN----------------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT- 141 (394)
T ss_pred HHHHHHHHHHHHHHHC----------------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH-
Confidence 9999998887776642 58889999999999999999999999999999776
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~ 274 (356)
|+...+++..+.++|..++|.+++++.+..||++.|++.+++.++.++
T Consensus 142 -----~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l 189 (394)
T PRK10213 142 -----VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIF 189 (394)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999887765554433
No 15
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.72 E-value=1.7e-15 Score=145.49 Aligned_cols=176 Identities=18% Similarity=0.186 Sum_probs=144.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~ 146 (356)
+++.++.+.+..++..++.......+ .++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 44555555555555555554444433 456788999999999999999999999999999999998 9999999999998
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
.++.+++..+. +...+++++++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~~~~~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 126 (385)
T TIGR00710 81 ALSSLGLALSN----------------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------ 126 (385)
T ss_pred HHHHHHHHHHc----------------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------
Confidence 88887776542 46778889999999999999999999999999766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
|+..+++++....+|..+++.+++++.+..+|++.|++.+++.++..+....
T Consensus 127 ~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 127 LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999899999998877766555444443
No 16
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.72 E-value=5.3e-16 Score=146.72 Aligned_cols=166 Identities=20% Similarity=0.258 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (356)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~ 154 (356)
++..++..+....+...++.++.+++|.+..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.+++.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 3455556666655555566588899999999999999999999999999999999998 999999999999998855555
Q ss_pred HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 018406 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (356)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~ 234 (356)
++. +.+.+++++++.|++.+...+...++++|.+|+++ |+..++++
T Consensus 81 ~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~ 126 (352)
T PF07690_consen 81 FAS----------------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGIL 126 (352)
T ss_dssp HHC----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHH
T ss_pred hhh----------------------------hHHHHhhhccccccccccccccccccccccchhhh------hhhccccc
Confidence 431 35589999999999999999999999999999977 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 235 ~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
+....+|..++|.+++++.+..+|++.|++.+++.++..++
T Consensus 127 ~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 127 SAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL 167 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence 99999999999999999998899999999988887766554
No 17
>PRK12382 putative transporter; Provisional
Probab=99.71 E-value=2e-15 Score=146.22 Aligned_cols=172 Identities=13% Similarity=0.032 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.++.+.+..++..+........++.|+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGLA 94 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHHH
Confidence 345555556666666666666778889999999999999999999999999999999999998 9999999998877766
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+...+....+... ..+...++++|++.|+|.+...+...+++.|.+|+++ |++
T Consensus 95 ~~~~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 148 (392)
T PRK12382 95 GLAYLLAAILPVSA--------------------PFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGK 148 (392)
T ss_pred HHHHHhhhccccch--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cch
Confidence 54433221111000 1257788999999999999888888889999999776 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~ 268 (356)
++++++.+.++|..++|.+++++.+..||++.+.+..+.
T Consensus 149 a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~ 187 (392)
T PRK12382 149 VMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVL 187 (392)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 999999999999999999999998888998876654443
No 18
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.71 E-value=1.6e-15 Score=144.01 Aligned_cols=172 Identities=17% Similarity=0.081 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (356)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~ 153 (356)
++...++..++.......++.|.. +++.+..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.+++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 445555565665555555666654 5899999999999999999999999999999998 99999999998888777766
Q ss_pred HHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHH
Q 018406 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (356)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~ 233 (356)
.+....+ ..+.+.+++++++.|++.+...+...++++|.+|+++ |++.+++
T Consensus 82 ~~~~~~~-----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (365)
T TIGR00900 82 PFVALLG-----------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSL 132 (365)
T ss_pred HHHHHcC-----------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhH
Confidence 6543100 0147888999999999999999999999999999776 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 234 ~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
++....+|..++|.+++++.+..||++.|++.++..++..++.
T Consensus 133 ~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 175 (365)
T TIGR00900 133 SQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988776655544443
No 19
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.71 E-value=3e-15 Score=143.12 Aligned_cols=182 Identities=13% Similarity=0.147 Sum_probs=164.7
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (356)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~ 143 (356)
.+..|..++.+.+..|+....-|....-+ .-+.+++|.+...+++.++.|.++..++.++...++||+ .||++++...
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~~gLL-p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVPVGLL-PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHHHhch-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence 34557778888888888888888776654 457789999999999999999999999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (356)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~ 223 (356)
++++++.++.+++. ++..+.++|++.|+..|.+.+...+..+++.|+++
T Consensus 86 ~lFi~~n~l~alAp----------------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~--- 134 (394)
T COG2814 86 ALFIVSNLLSALAP----------------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK--- 134 (394)
T ss_pred HHHHHHHHHHHHhc----------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc---
Confidence 99999999999873 58999999999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (356)
Q Consensus 224 ~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (356)
|+++.++.+.+..++..+|.-++.++-+.+|||+.|++.+++.++.++..+...|
T Consensus 135 ---~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 ---RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ---hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999998888877777776666
No 20
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.71 E-value=2.6e-15 Score=144.91 Aligned_cols=173 Identities=13% Similarity=0.221 Sum_probs=147.5
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 018406 63 SKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (356)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~ 142 (356)
..+.+|+.+....+..++..+..+.+.. ....+++++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~ 83 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVAL-VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS 83 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence 4467788888888888888877765544 44567889999999999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChh
Q 018406 143 TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD 222 (356)
Q Consensus 143 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~ 222 (356)
.++..++.+++.++. +...++++|++.|++.++..+...+++.|.+|+++
T Consensus 84 ~~~~~~~~~~~~~~~----------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~-- 133 (405)
T TIGR00891 84 IVLFSAGTLACGFAP----------------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL-- 133 (405)
T ss_pred HHHHHHHHHHHHHhc----------------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh--
Confidence 998888887776542 47778899999999999999999999999999876
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHH
Q 018406 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGI 271 (356)
Q Consensus 223 ~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g--w~~~f~i~~~~~~i 271 (356)
|+...++++.+..+|..+++.+.+.+.+..+ |++.|.+.++..++
T Consensus 134 ----~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~ 180 (405)
T TIGR00891 134 ----RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIF 180 (405)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 8999999999999999999999998887766 99998875554443
No 21
>PRK10504 putative transporter; Provisional
Probab=99.71 E-value=3e-15 Score=148.57 Aligned_cols=178 Identities=12% Similarity=0.046 Sum_probs=148.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~ 147 (356)
.+.+|.+.+..++..+..+.+...++.|. +++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 44578888888888888887777777665 57999999999999999999999999999999998 99999999988888
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++.+++.++. +...++++|++.|+|.++..+...+++.|.+|+++ +
T Consensus 87 ~~~~~~~~~~----------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~ 132 (471)
T PRK10504 87 LGSLFCALSG----------------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------Y 132 (471)
T ss_pred HHHHHHHHhC----------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------H
Confidence 8777665531 46778889999999999999999999999998665 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (356)
+..+++++...++|..++|.+++++.+..||++.|.+...+..+..++.....+
T Consensus 133 ~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 133 MAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999999999999999877665555444443333
No 22
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.70 E-value=1.8e-15 Score=147.30 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 68 WIAALFIFGNEMAERM---AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~---~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
.+.++..+...+++.. ....+...++ .+.+++|.+..+.+...+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~ 86 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGML-AVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVA 86 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 3334444444444433 3333333343 35678999999999999999999999999999999998 99999999998
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+..++.+++..+. +.+.+++.|++.|++.+...+...+.+.|.++++.
T Consensus 87 ~~~~~~~~~~~~~----------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~---- 134 (406)
T PRK15402 87 FFILTCLAILLAQ----------------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD---- 134 (406)
T ss_pred HHHHHHHHHHHHc----------------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH----
Confidence 8888877766542 46778889999999988888888899999998766
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
+.+..++.+....+|..++|.+++++.+..+|++.|++.+++.++..+....
T Consensus 135 --~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 135 --AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence 6777777777778889999999999988889999998877776655544433
No 23
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.70 E-value=2.5e-15 Score=145.04 Aligned_cols=154 Identities=14% Similarity=0.115 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (356)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (356)
........+.+++|++..+.+++.+.+.+++.++.++.|+++||+ |||++++.+.+..+.+.+ .....
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~---------- 76 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP---------- 76 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh----------
Confidence 334455567889999999999999999999999999999999998 999887665555544432 22221
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (356)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~ 247 (356)
.+...++++|++.|+|.+.. .+.....+|.+|+++ |++..++++.+..+|..+++.
T Consensus 77 -----------------~~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~ 132 (368)
T TIGR00903 77 -----------------FNYEWLLACQLLAALGQPFL-LNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALA 132 (368)
T ss_pred -----------------ccHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 14788999999999998864 455556689999765 999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 248 LVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 248 i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
+++++.+..|||+.|.+.+++.++..++..
T Consensus 133 ~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~ 162 (368)
T TIGR00903 133 AGLKIYTAGGLQLLIIPIAAVAAAGIILVL 162 (368)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887776554444333
No 24
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.70 E-value=4e-15 Score=145.02 Aligned_cols=168 Identities=15% Similarity=0.210 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
++++...++..++.+.+...++.|+++++|++..+.+.+.+++.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 6777888888899888999999999999999999999999999999999999999999998 999999999999998888
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
.+.... +.+.+++.+++.|++.+...+...+++.|.+|+++ |++..
T Consensus 92 ~~~~~~----------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~ 137 (400)
T PRK11646 92 TMAIAH----------------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFF 137 (400)
T ss_pred HHHHhc----------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHH
Confidence 776542 46778889999999988888888999999999766 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 232 ~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
++++...++|..++|.+++++. ..||++.|++.+++.++..++
T Consensus 138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~ 180 (400)
T PRK11646 138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF 180 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 679999998877665544433
No 25
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.69 E-value=4.6e-15 Score=143.94 Aligned_cols=177 Identities=10% Similarity=-0.063 Sum_probs=144.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~ 146 (356)
.++.+..+....++..+........++.|+.+++|.+..+.+++.+++.++..++.++.|+++||+ |||++++++.+++
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~ 91 (399)
T PRK05122 13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC 91 (399)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence 344566677777777777766777788899999999999999999999999999999999999998 9999999999988
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
.++.+.+.++...... ...+...+++.|++.|+|.+...+....+..|.+++++
T Consensus 92 ~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------ 145 (399)
T PRK05122 92 ALSGLLYLLAGLLAAW--------------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------ 145 (399)
T ss_pred HHHHHHHHHhhhhhcc--------------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------
Confidence 8776665543210000 00145678899999999999998888899999998776
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~ 270 (356)
|++.++++..+..+|..+++.+++++.+..||++.+.+..++.+
T Consensus 146 r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 146 TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88899998888899999999999999999999988776555443
No 26
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.69 E-value=5e-15 Score=143.56 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=141.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
++.||..+.+....++..+..+.....+ .++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~ 81 (394)
T PRK11652 4 QRNVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMS 81 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHH
Confidence 3457777777777777766665444444 455688999999999999999999999999999999998 99999999998
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+..++.+++.... +...+++.|++.|++.+...+....+..|.++.++
T Consensus 82 ~~~~~~~~~~~~~----------------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 129 (394)
T PRK11652 82 IFILGTLVALFAH----------------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ---- 129 (394)
T ss_pred HHHHHHHHHHHHc----------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH----
Confidence 8888887766542 47788899999999988877777788888887655
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~ 274 (356)
++...++++.+..+|..++|.+++++.+..||++.|++.+++.++..+
T Consensus 130 --~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 130 --LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 788888888899999999999999998888999999887665544433
No 27
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.68 E-value=4.6e-15 Score=144.17 Aligned_cols=174 Identities=16% Similarity=0.125 Sum_probs=145.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+.+|..++......++..+..+...... ..+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence 3667777777777787777776655444 455678999999999999999999999999999999998 99999999998
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+..++.+++.+.. +...+++.+++.|++.+...+...++++|.+|+++
T Consensus 89 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 136 (406)
T PRK11551 89 LFGLFSLATAQAW----------------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL---- 136 (406)
T ss_pred HHHHHHHHHHHhc----------------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH----
Confidence 8887776665542 47778889999999999999999999999999776
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~ 274 (356)
|+..+++++....+|..+++.++.++.+..+|++.|++.+++.++..+
T Consensus 137 --r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (406)
T PRK11551 137 --RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVP 184 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999988888888999999887665444433
No 28
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.68 E-value=4.8e-15 Score=153.71 Aligned_cols=181 Identities=13% Similarity=0.030 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 018406 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (356)
Q Consensus 89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 168 (356)
...+..++.+++|++..+.+++.+++.++..++.+++|+++||+ |||++++++.++..++.+++.++.
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~----------- 253 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ----------- 253 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 44556677889999999999999999999999999999999998 999999999999888887777652
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 018406 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i 248 (356)
+.+.++++|++.|+|.|+..+...++++|.+|.+. |+..+++++....+|.++++.+
T Consensus 254 -----------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~l 310 (742)
T TIGR01299 254 -----------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAM 310 (742)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999776 8999999888889999999887
Q ss_pred HHHHHhh-------------cchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhHHHHHHHHHHHh
Q 018406 249 VVYIQME-------------HGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFR 305 (356)
Q Consensus 249 ~~~i~~~-------------~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~ 305 (356)
+.++... .+||+.|++.++..++.++++++. |..++--...+...++.+++....+
T Consensus 311 a~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l-PESPrwL~~~gr~~eA~~iL~~i~~ 379 (742)
T TIGR01299 311 AWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM-PESPRFFLENGKHDEAWMILKLIHD 379 (742)
T ss_pred HHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHCCCHHHHHHHHHHHhc
Confidence 7666543 257887777666554444333222 2211111122345566666655443
No 29
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.67 E-value=5.5e-15 Score=145.56 Aligned_cols=168 Identities=11% Similarity=0.049 Sum_probs=138.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+.++..++..++..+..+.+...++. +.+++|++..+.+.+.+.+.++..++.+++|+++||+ |||+++.++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~ 100 (434)
T PRK11663 23 HILITMYLGYALFYFTRKSFNAAMPE-MLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGI 100 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHH
Confidence 34444444455555544445454544 4567999999999999999999999999999999998 999999999999988
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+.+++..+. +...+++.|++.|++.|...+...++++|++++++ |+
T Consensus 101 ~~~~~~~~~----------------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg 146 (434)
T PRK11663 101 INILFGFSS----------------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RG 146 (434)
T ss_pred HHHHHHHHh----------------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HH
Confidence 887776642 46778888999999988888889999999999776 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~ 272 (356)
..+++++.+.++|..+++.+.+++.+..||++.|++.+++.++.
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 147 GWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877654433
No 30
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.67 E-value=9.4e-15 Score=139.57 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
.+......++.....+.+...++.|+++++|++..+.+++.+++.++..++.+++|+++||+ |||++++++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 45566666666667776777677679999999999999999999999999999999999998 99999999999999988
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+++.++.. +.+.++++|++.|++.+. .....++++|.+|+++ |+..
T Consensus 82 ~~~~~~~~---------------------------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~ 127 (366)
T TIGR00886 82 LWAGLAVQ---------------------------SYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTA 127 (366)
T ss_pred HHHHHHhh---------------------------hHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHH
Confidence 87776520 367788899999998654 4567789999999776 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----------hcchhHHHHH
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGA 264 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~----------~~gw~~~f~i 264 (356)
.+++....++|..+++.+.+.+.. ..+|++.|++
T Consensus 128 ~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 128 LGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 888887777777777776665544 2379999844
No 31
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.66 E-value=7.7e-15 Score=141.94 Aligned_cols=173 Identities=13% Similarity=0.116 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+.++.+....++..+..+.+...++ .+.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||+++.++.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 3456666677777777666666554 56788999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+.+++..+. +.+.+++.|++.|++.+...+....++.|.+++++ |+
T Consensus 81 ~~~l~~~~~----------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~ 126 (382)
T PRK10091 81 GNAMFTLSS----------------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VT 126 (382)
T ss_pred HHHHHHHhC----------------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hh
Confidence 888777652 57889999999999999888888888899888655 78
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
+.++.+..+..+|..++|.+++++.+..+||+.|++.+++.++..+...
T Consensus 127 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~ 175 (382)
T PRK10091 127 AAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIY 175 (382)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999999998889999999987776555444333
No 32
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.66 E-value=1.5e-14 Score=144.69 Aligned_cols=180 Identities=12% Similarity=0.031 Sum_probs=130.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
++|+.+...+...++..+.+|++..+++.|+++.+|++...+........++..++.+++|+++||+ |||++++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~ 325 (490)
T PRK10642 247 KHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVA 325 (490)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 3556555555555667788889999999999989999988888888888888999999999999998 999998888765
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
..++.+++..... . .+...+++++++.+++.++..+....+.+|.||++.
T Consensus 326 ~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~----- 375 (490)
T PRK10642 326 LFVLAIPAFILIN-----S--------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI----- 375 (490)
T ss_pred HHHHHHHHHHHHh-----C--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc-----
Confidence 5444333222111 0 135567778888888777777778888899999888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~ 277 (356)
|++..++.+....+++.++|.+.+++.+..+ |+..+++..+..++.++..+
T Consensus 376 -Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 427 (490)
T PRK10642 376 -RYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV 427 (490)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 8988886444455667889999999887654 66665554444444444333
No 33
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.66 E-value=9.3e-15 Score=142.95 Aligned_cols=168 Identities=16% Similarity=0.194 Sum_probs=142.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+.+|+.+....+..+...+..+.. ..+..++.+++|.+..+.+++.+++.++..++.++.|+++||+ |||+++.++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~ 91 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIV 91 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHH
Confidence 344566666666666666655443 4455677889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+..++.+++.++. +...++++|++.|+|.+...+....++.|.+|+++
T Consensus 92 ~~~~~~~~~~~~~----------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~---- 139 (426)
T PRK12307 92 AYSVGTGLSGLAS----------------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL---- 139 (426)
T ss_pred HHHHHHHHHHHHh----------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH----
Confidence 9999888777653 47889999999999999999999999999999876
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~ 268 (356)
|++..++++.+..+|..+++.+.+++.+..+|++.|++..+.
T Consensus 140 --r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 140 --KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred --hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 889999999999999999999999988889999999875443
No 34
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.66 E-value=5.4e-15 Score=146.83 Aligned_cols=172 Identities=16% Similarity=0.136 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
+..+++..++..+....+ .....++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIV-NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 344445555555554433 3445566788999999999999999999999999999999998 99999999999999988
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+++..+. +...++++|++.|++.+...+...+++.|.+|+++ |+..
T Consensus 82 ~~~~~~~----------------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~ 127 (485)
T TIGR00711 82 LLCGVAP----------------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRA 127 (485)
T ss_pred HHHhCcC----------------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHH
Confidence 8776542 47788999999999999999999999999999766 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
+++++....+|..++|.+++++.++.+|++.|++.+.+.++.+++...
T Consensus 128 ~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~ 175 (485)
T TIGR00711 128 MAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFF 175 (485)
T ss_pred HHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877665554444333
No 35
>TIGR00895 2A0115 benzoate transport.
Probab=99.65 E-value=1.2e-14 Score=139.55 Aligned_cols=174 Identities=16% Similarity=0.111 Sum_probs=141.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+.+|+.+....+..++..+..+ .......++.+++|++..+.+.+.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~ 90 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSIL 90 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHH
Confidence 4455555555555555545444 334455567788999999999999999999999999999999998 99999999998
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+..++.+++.... +...+++.+++.|++.+...+...++++|.+|++.
T Consensus 91 ~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---- 138 (398)
T TIGR00895 91 LFSVFTLLCALAT----------------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF---- 138 (398)
T ss_pred HHHHHHHHHHHcc----------------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh----
Confidence 8888777666532 46778889999999999999999999999999766
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~ 274 (356)
|+..+++++.+..+|..+++.+.+++.+..||++.|++.+++..+..+
T Consensus 139 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 186 (398)
T TIGR00895 139 --RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLL 186 (398)
T ss_pred --hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHH
Confidence 899999999999999999999999999999999998887554443333
No 36
>PRK03699 putative transporter; Provisional
Probab=99.65 E-value=2.8e-14 Score=138.61 Aligned_cols=175 Identities=7% Similarity=0.050 Sum_probs=142.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
.++||..+...+..++.....+.+...++ .+.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~ 80 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGMVMG-PIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA 80 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 45677777777777776666655555444 46678999999999999999999999999999999998 99999999998
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+..++.+++.++. +...+++.|++.|++.+...+...+++.|.+|+++
T Consensus 81 ~~~i~~~l~~~~~----------------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~---- 128 (394)
T PRK03699 81 LMILAVAGLMFSH----------------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ---- 128 (394)
T ss_pred HHHHHHHHHHHcc----------------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch----
Confidence 8888887776642 47788899999999999888888899999998765
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~-~~gw~~~f~i~~~~~~i~~~~ 275 (356)
|+...+..+....+|+.++|.+.+++.. ..|||+.|.+.+++.++.+++
T Consensus 129 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 129 --RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 7888888777788899999998888765 568999998877765544433
No 37
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.65 E-value=3.6e-14 Score=141.51 Aligned_cols=179 Identities=15% Similarity=0.088 Sum_probs=130.7
Q ss_pred ccccCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 018406 61 DLSKTG-GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (356)
Q Consensus 61 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i 139 (356)
.+..++ +++.+.......++..+..+.+. .+..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~ 104 (476)
T PLN00028 27 LFSFARPHMRAFHLSWISFFTCFVSTFAAA-PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGS 104 (476)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHH
Confidence 344333 34444444444444555444443 344577889999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 018406 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (356)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~ 219 (356)
.++.++..++.+++.++. +...+++.|++.|++.+... ....+++|.+|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~----------------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~ 155 (476)
T PLN00028 105 AFLLMLTAPAVFCMSLVS----------------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGK 155 (476)
T ss_pred HHHHHHHHHHHHHHHHhc----------------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChh
Confidence 998888888877666542 46677888999999887653 4556789999977
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----h-----hcchhHHHHHHHHHHHHHHHHH
Q 018406 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~----~-----~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
. |+.+.++++...++|+.+++.+.+.+. + ..|||+.|++.+++.++..++.
T Consensus 156 ~------rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 156 I------VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred h------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 6 889998887777777777766554432 2 2489999998877765544433
No 38
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.65 E-value=2e-14 Score=143.39 Aligned_cols=168 Identities=14% Similarity=0.225 Sum_probs=142.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+.+|+.+..+.+..++..+..+.+. .+..++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 4566766666666666666665444 455677889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+..++.+++.+.. +.+.+++++++.|++.++..+....++.|.+++++
T Consensus 94 ~~~~~~~~~~~~~----------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 141 (496)
T PRK03893 94 LFSVGTLACGFAP----------------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL---- 141 (496)
T ss_pred HHHHHHHHHHHHh----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence 9888888777642 47788999999999999999999999999999766
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 268 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~ 268 (356)
|+...++++...++|..+++.+.+++.+..+|++.|++..+.
T Consensus 142 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 142 --RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 888999999999999999999999999999999998874443
No 39
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.65 E-value=1.4e-14 Score=138.00 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 018406 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (356)
Q Consensus 85 ~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~ 164 (356)
.|.+ ..+..++.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+++.++.
T Consensus 19 ~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~------- 89 (377)
T TIGR00890 19 VYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD------- 89 (377)
T ss_pred Hhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-------
Confidence 4433 3456778889999999999999999999999999999999998 999999999999999988877753
Q ss_pred CCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 018406 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (356)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i 244 (356)
+...++++|++.|++.+...+.......+.++ ++ |+...+++..+..+|..+
T Consensus 90 ---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~ 141 (377)
T TIGR00890 90 ---------------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFI 141 (377)
T ss_pred ---------------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhH
Confidence 57888899999999998877777778888886 33 788899999988899887
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 245 ~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
++.+.+.+.+..||++.|++.+++.++..+..
T Consensus 142 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 142 LSPLITSVINLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 76677777777899999998777665544433
No 40
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.64 E-value=2.7e-14 Score=140.51 Aligned_cols=177 Identities=16% Similarity=0.191 Sum_probs=127.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSN---AVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~a~~---~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~ 140 (356)
+++.+....+..+++.+..+. ...+..++.++++ .+..+.+. +.....++..++.+++|+++||+ |||+++.
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~ 97 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSML 97 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence 344444454556666666654 4556668888874 44544333 33444455559999999999998 9999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (356)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~ 220 (356)
++.+++.++.++++++.+.... .......+++.|++.|+|.|+..+...++++|.+|+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 98 ISVCMMCFGSLVIACLPGYETI--------------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHHHhhcCCchhH--------------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 9999999998887764210000 00124568899999999999999999999999999876
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhcchhHHHHHHHHHHHH
Q 018406 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMGI 271 (356)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~--------~~~gw~~~f~i~~~~~~i 271 (356)
|+.+.++.+.+.++|..+++.+...+. ...|||+.|++.++..++
T Consensus 158 ------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll 210 (432)
T PRK10406 158 ------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVV 210 (432)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH
Confidence 888888888888888888876654443 257999999886665543
No 41
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=99.64 E-value=1.4e-15 Score=146.82 Aligned_cols=155 Identities=41% Similarity=0.682 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhcc
Q 018406 136 YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ 215 (356)
Q Consensus 136 r~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~ 215 (356)
+|+++++.+++++|.+++++++..+.. +++.+...++++++++++|.|+.++++.++++||
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~-------------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq 61 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL-------------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQ 61 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh-------------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHH
Confidence 589999999999999998887753222 1234578899999999999999999999999999
Q ss_pred CCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccccc-CCCCChhH
Q 018406 216 FDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLT 294 (356)
Q Consensus 216 f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~ 294 (356)
+++++ +.++.++|+|||++.|+|+.+++++.+|+++++||.++|+++.+.++++++.++.++++|+.. ++.+++..
T Consensus 62 ~~~~~---~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~ 138 (372)
T PF00854_consen 62 YDEDD---DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLT 138 (372)
T ss_dssp SSTTT---TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S
T ss_pred hcccc---hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccc
Confidence 99764 246899999999999999999999999999999999999999999999999999999999888 67778777
Q ss_pred H-HHHHHHHHHhccccCCC
Q 018406 295 R-VAQVLVAAFRKRHAAFS 312 (356)
Q Consensus 295 ~-~~~vl~~~~~~~~~~~~ 312 (356)
+ ...++....+++....|
T Consensus 139 ~~~~~~~~~~~~~~~~~~~ 157 (372)
T PF00854_consen 139 NFIKLVLVAAFKKRKLAVP 157 (372)
T ss_dssp --SHHHHHHHHHHHCCCH-
T ss_pred hhHHHHHHHHHHHhhcccc
Confidence 7 66666777777766654
No 42
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.64 E-value=1.1e-14 Score=138.96 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=133.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 018406 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (356)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (356)
....++.+++|.+..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+++.++.
T Consensus 15 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------- 80 (399)
T TIGR00893 15 FAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------- 80 (399)
T ss_pred HhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc-------------
Confidence 344557889999999999999999999999999999999998 999999999999888888777652
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018406 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (356)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~ 250 (356)
+.+.++++|++.|++.+...+....+++|.+|+++ |+..+++++...++|..+++.+.+
T Consensus 81 ---------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~ 139 (399)
T TIGR00893 81 ---------------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVG 139 (399)
T ss_pred ---------------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHH
Confidence 47889999999999999999999999999999766 899999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 251 YIQMEHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 251 ~i~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
++.+..+|++.|++.+++.++..++..
T Consensus 140 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (399)
T TIGR00893 140 WILIHFSWQWAFIIEGVLGIIWGVLWL 166 (399)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHhh
Confidence 999999999999887776555444433
No 43
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.63 E-value=5.3e-14 Score=136.26 Aligned_cols=167 Identities=16% Similarity=0.119 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (356)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~ 152 (356)
...+..+....+.......++ .+.+++|.+..+.++..+.+.++..++.++.|+++||+ |||+.++++.+++.++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lp-~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 7 CSFALVLLYPAGIDMYLVGLP-RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHH
Confidence 334444444445444444444 45678999999999999999999999999999999998 9999999999988888877
Q ss_pred HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHH
Q 018406 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (356)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~ 232 (356)
+..+. +...++++|++.|++.+...+...+++.|.+++++ |+...+
T Consensus 85 ~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 130 (392)
T PRK10473 85 CSLAE----------------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLS 130 (392)
T ss_pred HHHhC----------------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHH
Confidence 66542 36678889999999999888889999999999776 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 233 ~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
+++...++|..++|.+++++.+..+|++.|++.+++.++..++
T Consensus 131 ~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~ 173 (392)
T PRK10473 131 LLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLL 173 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888889999998877665554444
No 44
>PRK11043 putative transporter; Provisional
Probab=99.63 E-value=5e-14 Score=136.85 Aligned_cols=161 Identities=16% Similarity=0.241 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHH--HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 018406 81 ERMAYFGLSVNMVTF--MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (356)
Q Consensus 81 ~~~~~~~~~~~l~~y--l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~ 158 (356)
..+.++.....+|.+ +.+++|.+..+.+++.+++.++..++.+++|+++||+ |||+++.++.++..++.+++....
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~- 92 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE- 92 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc-
Confidence 333333333344433 6789999999999999999999999999999999998 999999999988888777766542
Q ss_pred ccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHH
Q 018406 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~ 238 (356)
+...+++.|++.|+|.+...+...++..|.+++++ +++.++..+...
T Consensus 93 ---------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 139 (401)
T PRK11043 93 ---------------------------SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLV 139 (401)
T ss_pred ---------------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHH
Confidence 46778889999999988877777888999998765 677777777778
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 239 ~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
.+|..++|.+++++.+..||++.|++.+++.++..++.
T Consensus 140 ~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 177 (401)
T PRK11043 140 ALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT 177 (401)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999988777665554443
No 45
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.62 E-value=4e-14 Score=137.60 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=125.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccc
Q 018406 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (356)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (356)
+...+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.+++.++.+++.++.
T Consensus 31 ~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~-------------- 95 (393)
T PRK09705 31 LLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP-------------- 95 (393)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc--------------
Confidence 34457789999999999999999999999999999999998 999999999999999999988753
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018406 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~ 251 (356)
+...++++|++.|+|.+...+.....+.+.++ ++ |+.+++.+..+.++|..+++.++++
T Consensus 96 --------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g~~~~~~ 154 (393)
T PRK09705 96 --------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLGAAITPW 154 (393)
T ss_pred --------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778899999999999988888999999887 44 7899999999999999999999998
Q ss_pred HHhhc-chhHHHHHHHHHHHHH
Q 018406 252 IQMEH-GWGSAFGALAIAMGIS 272 (356)
Q Consensus 252 i~~~~-gw~~~f~i~~~~~~i~ 272 (356)
+.++. +|++.+.+.++..++.
T Consensus 155 l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 155 LVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred HHHhcCCHHHHHHHHHHHHHHH
Confidence 88875 7998876554443333
No 46
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.62 E-value=4.2e-14 Score=135.87 Aligned_cols=153 Identities=17% Similarity=0.229 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (356)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (356)
....++.+. +++|++..+.+.+.+++.++..++.+++|+++||+ |||+++.++.++..++.+++....
T Consensus 10 ~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 10 YLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 334455554 57999999999999999999999999999999998 999999999999888888777642
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (356)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~ 247 (356)
+...+++.+++.|++.+...+...+++.|.+++++ |+..+++++....+|..++|.
T Consensus 78 ------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~ 133 (377)
T PRK11102 78 ------------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPI 133 (377)
T ss_pred ------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999988999999999999776 899999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 248 LVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 248 i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
+++++.+..+|++.|++.+++.++..++.
T Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 162 (377)
T PRK11102 134 IGGWLLVWFSWHAIFWVLALAAILAAALV 162 (377)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 99999998999999988777665554443
No 47
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.62 E-value=2.1e-14 Score=140.89 Aligned_cols=140 Identities=19% Similarity=0.278 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcc
Q 018406 104 FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAK 183 (356)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (356)
..+.+++.+++.++..++.+++|+++||+ |||++++++.+++.++.+++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~------------------------- 123 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF------------------------- 123 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-------------------------
Confidence 88999999999999999999999999998 9999999999999988888765421
Q ss_pred hhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHhhcchhH
Q 018406 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWGS 260 (356)
Q Consensus 184 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~---~~i~~~~gw~~ 260 (356)
..+.+.++++|++.|+|.+...+...++++|.+++++ |+..+++++.+.++|..+++.+. ..+.+..+||+
T Consensus 124 ~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~ 197 (481)
T TIGR00879 124 ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197 (481)
T ss_pred ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHH
Confidence 0135678999999999999999999999999999877 89999999999999999999988 55556779999
Q ss_pred HHHHHHHHHHHHHHH
Q 018406 261 AFGALAIAMGISNML 275 (356)
Q Consensus 261 ~f~i~~~~~~i~~~~ 275 (356)
.|++.++..++.++.
T Consensus 198 ~f~~~~~~~~~~~~~ 212 (481)
T TIGR00879 198 PLGLQLIPAGLLFLG 212 (481)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999865555444433
No 48
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.61 E-value=2.1e-13 Score=132.26 Aligned_cols=169 Identities=12% Similarity=-0.013 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD-----SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~-----a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
........++..++++.....++.|++ ++|.+..+ .+.+.+++.++..++.++.|+++||+ |||++++++.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 93 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHHHH
Confidence 455556667777777667677777764 58887654 37788889999999999999999998 999999999888
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
..++.+++.... +.+.+++.+++.|++.+ ..+....++.|.+++++
T Consensus 94 ~~~~~~~~~~~~----------------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~----- 139 (408)
T PRK09874 94 MGIVMVLMGLAQ----------------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK----- 139 (408)
T ss_pred HHHHHHHHHHHh----------------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh-----
Confidence 888777665532 47778889999998754 45667778889988765
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
|+...++++....+|..++|.+.+++.+..+|++.|++.+++.++..+..
T Consensus 140 -~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 189 (408)
T PRK09874 140 -SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVT 189 (408)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999998999999988777665554443
No 49
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.61 E-value=1.1e-13 Score=134.74 Aligned_cols=170 Identities=12% Similarity=0.061 Sum_probs=135.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
-+.||.+....+..++..+..+....+++.|+ +++|.+..+.+++.+.+.++..++.+++|+++||+ |||+++..+.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 45567778888888888787776777777777 67899999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+..++.+++..... . ..+...+++.|++.|+|.+...+...+.+.+.+++++
T Consensus 87 ~~~~~~~~~~~~~~-----~-------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~---- 138 (402)
T TIGR00897 87 LWCVGHAAFIVFGL-----G-------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN---- 138 (402)
T ss_pred HHHHHHHHHHHHhc-----c-------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH----
Confidence 98887665432110 0 0146677788999999988777777778889888766
Q ss_pred hhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhcchhHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALA 266 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~-~i~p~i~~~i~~~~gw~~~f~i~~ 266 (356)
|++..++++.+.++|. .++|.+++++.+..||+..++...
T Consensus 139 --~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~ 179 (402)
T TIGR00897 139 --LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSAL 179 (402)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 8999999999999986 578988889888888765554433
No 50
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.61 E-value=3.5e-14 Score=140.99 Aligned_cols=151 Identities=17% Similarity=0.198 Sum_probs=120.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc-cccCCCCCCccccccccCCC
Q 018406 101 HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM-KVFMPNQDNCDRISQLLGSC 179 (356)
Q Consensus 101 ~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 179 (356)
+.+..+.+++.+++.++..++++++|+++||+ |||++++++.+++.++.+.+++.... ....
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~---------------- 113 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIG---------------- 113 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccccc----------------
Confidence 88889999999999999999999999999998 99999999999998887776653110 0000
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH------
Q 018406 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ------ 253 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~------ 253 (356)
.++......++++|++.|++.|+..+...++++|.+|+++ |+..+++++.+..+|..+++.++.++.
T Consensus 114 -~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 186 (479)
T PRK10077 114 -PDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDAS 186 (479)
T ss_pred -ccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence 0011235678899999999999999999999999999876 899999999999999999887665543
Q ss_pred --hhcchhHHHHHHHHHHHHHHHH
Q 018406 254 --MEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 254 --~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
+..|||+.|++.++..++.++.
T Consensus 187 ~~~~~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 187 WLNTDGWRYMFASEAIPALLFLML 210 (479)
T ss_pred ccccCChHHHHHHHHHHHHHHHHH
Confidence 3468999998876665554433
No 51
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.61 E-value=9e-14 Score=139.09 Aligned_cols=175 Identities=18% Similarity=0.132 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HH--HH-H-HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF--AD--SS-N-AVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~--a~-~-~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~ 141 (356)
++.++...+..+++.+.+. +..+...++.++++.+. .. .+ . +.++..++..++.+++|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 4555666667777776665 44455567788875433 21 11 1 24667788999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (356)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~ 221 (356)
+.+++.++.++++++.+...+. -....+++++|++.|+|.|+..+...++++|.+|+++
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g--------------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~- 151 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIG--------------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK- 151 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHH--------------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC-
Confidence 9999999998888753100000 0011247889999999999999999999999999877
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhcchhHHHHHHHHHHH
Q 018406 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAMG 270 (356)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~--------~~~gw~~~f~i~~~~~~ 270 (356)
|+...++...+..+|..+++.+...+. ...|||+.|++.++..+
T Consensus 152 -----Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l 203 (490)
T PRK10642 152 -----RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGI 203 (490)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHH
Confidence 888888888777778777776554432 25799999988655433
No 52
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.60 E-value=8.4e-14 Score=138.09 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=122.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccc
Q 018406 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (356)
Q Consensus 93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 172 (356)
...+.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++..++.+++.++.
T Consensus 42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~--------------- 105 (455)
T TIGR00892 42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS--------------- 105 (455)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh---------------
Confidence 3456689999999999999999999999999999999998 999999999988888887776642
Q ss_pred ccccCCCCCcchhhHHHHHH-HHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018406 173 SQLLGSCEPAKSWQMLYLYT-VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~ 251 (356)
+...+++ .|++.|++.+...+...+++.+.|+ ++ |+...++++.+..+|..++|.++++
T Consensus 106 -------------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~ 165 (455)
T TIGR00892 106 -------------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQY 165 (455)
T ss_pred -------------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 3455554 4578899888765666677888885 44 8999999999999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 252 IQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 252 i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
+.+..||++.|++.+++.++..+..++
T Consensus 166 l~~~~gwr~~f~~~~~~~~~~~v~~~~ 192 (455)
T TIGR00892 166 LFESFGWRGSFLILGGLLLHCCVCGAL 192 (455)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776655444333
No 53
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.60 E-value=8.6e-14 Score=130.93 Aligned_cols=168 Identities=20% Similarity=0.258 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+.+....++..+..+.....++.|. +++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+.++.++..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~ 79 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL 79 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence 3445566677777776666666665 56799999999999999999999999999999998 999999999999998888
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
++.... +...+++++++.|++.+...+...++..|.+++++ |+..+
T Consensus 80 ~~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 125 (352)
T cd06174 80 LLAFAS----------------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRAL 125 (352)
T ss_pred HHHHhc----------------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhh
Confidence 777642 47788999999999999999999999999999876 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 232 ~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
++.+....+|..++|.+.+++.+..+|++.|++.++..++..+.
T Consensus 126 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (352)
T cd06174 126 GLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL 169 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999889999998877765555443
No 54
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.60 E-value=1.8e-13 Score=133.14 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
.+.+....++..++...+...++. +..+++.+....+++.+.+.+...++.+++|+++||+ |||++++++.+++.++.
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLGC 82 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHHH
Confidence 455566666666654444333443 4678999999999999999999999999999999998 99999999999998877
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+.+.... + .++.|++.|++.++..+...++++|.+|+++ |+++
T Consensus 83 ~~~~~~~----------------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a 125 (393)
T PRK11195 83 LLMLFGI----------------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKA 125 (393)
T ss_pred HHHHHHH----------------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHH
Confidence 7655431 2 2678899999999999999999999999776 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~ 272 (356)
.++......+|..+||.+++++.+. .|+..+.+.+.+.+++
T Consensus 126 ~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 126 NGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 3666666655444333
No 55
>PRK10133 L-fucose transporter; Provisional
Probab=99.60 E-value=3.6e-13 Score=132.93 Aligned_cols=154 Identities=13% Similarity=-0.028 Sum_probs=120.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~ 146 (356)
....++.+.+..+...+........+ ..+++++|.+..+.++..+.+.++..++.++.|+++||+ |||+++.++.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~ 101 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILL-PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 44455555555555555554444444 456899999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
.++.+++..... ..+...++++|++.|+|.|...+...++++|..+++.
T Consensus 102 ~~~~~l~~~~~~-------------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------ 150 (438)
T PRK10133 102 ALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------ 150 (438)
T ss_pred HHHHHHHHHHHh-------------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------
Confidence 999877643211 0157889999999999999999999999998755443
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~ 253 (356)
+....+.++....+|..+++.+++.+.
T Consensus 151 ~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 151 GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444577777778888888888776543
No 56
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.59 E-value=3.2e-13 Score=132.20 Aligned_cols=171 Identities=11% Similarity=0.028 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+.+....++..+.. ++...+...+++++|.+..+.+++.+.+.++..+++++.|++.||+ |||++++++.+++.++.+
T Consensus 6 ~~~~~~f~~~G~~~-~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 6 ALITSLFALWGFAN-DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHH-HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 44444444444333 4555566778999999999999999999999999999999999998 999999999999999987
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
++..+.. ..+.+.+++++++.|+|.|...+...+++.+..|+++ +++..
T Consensus 84 l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~ 132 (410)
T TIGR00885 84 LFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRL 132 (410)
T ss_pred HHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHH
Confidence 7654321 0147788899999999999999999999999888765 67778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--------------------------hcchhHHHHHHHHHHHHHHHH
Q 018406 232 NFFYLSVTVGAIVAFTLVVYIQM--------------------------EHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 232 ~~~~~~~~iG~~i~p~i~~~i~~--------------------------~~gw~~~f~i~~~~~~i~~~~ 275 (356)
++.+...++|..++|.+.+.+.. ..+|++.|.+.+++.++..++
T Consensus 133 ~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 133 NLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999988876642 236999998877765544333
No 57
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.59 E-value=4e-14 Score=134.50 Aligned_cols=177 Identities=23% Similarity=0.254 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHH-HHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIA-IFTTIYL 147 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GRr~~i~-~~~~l~~ 147 (356)
-+|.+.+..++..+.-|++..+.|.|+.+..|++..++.+..+++..+...++++.||+||+++ |||.... ++.++..
T Consensus 253 ~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~ 332 (448)
T COG2271 253 LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLIT 332 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999998 8886544 3344444
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++.+....+ |+ .+..+..+.++++|+..-+..-.+.....|..|.+- -
T Consensus 333 ~~~~~~w~~-------~~-------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------a 380 (448)
T COG2271 333 ASLVLYWLA-------PN-------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------A 380 (448)
T ss_pred HHHHHHHcC-------CC-------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------c
Confidence 444444332 21 246777777888898888888777777788888665 6
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 228 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 228 ~~~~~~~~~~~~i-G~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
|++.+...+...+ |+.++....+++.|.+||..+|.+..+..+++.++++.
T Consensus 381 GtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 381 GTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred cchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 7777777777777 88888888899999999999998877766655554443
No 58
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.58 E-value=2.4e-13 Score=131.34 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=132.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~ 147 (356)
.+.++.+++..++..+....+...++.|+. ++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 456788888888888887777777777765 7899999999999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++.+.+.++. +.+.++++|++.|++.+...+...+...+..++++ |
T Consensus 83 ~~~~~~~~~~----------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~ 128 (381)
T PRK03633 83 AGCAGLGLMV----------------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------R 128 (381)
T ss_pred HHHHHHHHhc----------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------H
Confidence 8887776642 47788899999999999888877777778877655 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
++.+++++...++|..+++.+.+++.+...+
T Consensus 129 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~ 159 (381)
T PRK03633 129 GRLLAAYMMVYYLGTVLGQLLVSKVSTELMS 159 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999988765433
No 59
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.58 E-value=3.2e-14 Score=141.38 Aligned_cols=152 Identities=16% Similarity=0.067 Sum_probs=124.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccc
Q 018406 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (356)
Q Consensus 93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 172 (356)
...+.+++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+.+..... ..
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--~~---------- 118 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG--SG---------- 118 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh--cc----------
Confidence 4467889999999999999999999999999999999998 9999999888887776666554310 00
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018406 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i 252 (356)
..+...+++.|++.|++.+...+....+++|.+|+++ |+..++++..+.++|..+++.+..++
T Consensus 119 -----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~ 181 (467)
T PRK09556 119 -----------SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWG 181 (467)
T ss_pred -----------cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHH
Confidence 0257889999999999999988999999999999887 89999999999999999999888777
Q ss_pred Hhhc---chhHHHHHHHHHHHHHHH
Q 018406 253 QMEH---GWGSAFGALAIAMGISNM 274 (356)
Q Consensus 253 ~~~~---gw~~~f~i~~~~~~i~~~ 274 (356)
.... +|+..|.+.+++.++..+
T Consensus 182 ~~~~~~~~~~~~f~~~g~~~~~~~i 206 (467)
T PRK09556 182 ANYFFDGHVIGMFIFPSIIALIIGF 206 (467)
T ss_pred HHhhccCcchhHHHHHHHHHHHHHH
Confidence 6653 588888776665544333
No 60
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.58 E-value=2.5e-13 Score=130.01 Aligned_cols=169 Identities=11% Similarity=0.037 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHHHHH
Q 018406 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTIYLAGLTGIT 154 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~-~~~l~~~g~~~~~ 154 (356)
+..++..++.......++.|+++++|.+..+.+.+.+.+.+...+..++.|+++||+ |||+.+++ +.++..++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence 445666667767777888899999999999999999999999999999999999998 99887665 4444455555554
Q ss_pred HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 018406 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (356)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~ 234 (356)
.+. +...+++.+++.+.+.+...+...++..|..+++. +.+....++.
T Consensus 83 ~~~----------------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~ 130 (375)
T TIGR00899 83 WNR----------------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVM 130 (375)
T ss_pred hcc----------------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHH
Confidence 431 46667777877777767777777777888776544 1122335667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 235 ~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
+...++|..++|.+++++.+..||++.|++.+++.++..++.+
T Consensus 131 ~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~ 173 (375)
T TIGR00899 131 RAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVW 173 (375)
T ss_pred HHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999989999999988776555544433
No 61
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.58 E-value=4.2e-13 Score=132.15 Aligned_cols=160 Identities=8% Similarity=-0.069 Sum_probs=119.2
Q ss_pred CCCcccccCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018406 57 KPIADLSKTGG---WIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAY 132 (356)
Q Consensus 57 ~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~ 132 (356)
||. -|..+++ ||.++...+..+..-+..+ +.+.+..++.+ ++|++..+.+++.+++.+++.++.++.|++.||+
T Consensus 20 ~~~-~w~~~~~~~a~r~l~~s~~~f~~~F~~w~-~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~ 97 (462)
T PRK15034 20 NPA-FWENKGKHIARRNLWISVSCLLLAFCVWM-LFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF 97 (462)
T ss_pred ChH-HHhhcCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344 4554544 3666665555444444444 44445555554 7999999999999999999999989999999998
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhh
Q 018406 133 LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFG 212 (356)
Q Consensus 133 ~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ 212 (356)
|.|+++.++.++..+..+++.++... . ..++..+++.+++.|++ ++..+.....+
T Consensus 98 -G~R~v~~~~~ll~~i~~~~~~~a~~~--~---------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~v 152 (462)
T PRK15034 98 -GGRRWTVFSTAILIIPCVWLGIAVQN--P---------------------NTPFGIFIVIALLCGFA-GANFASSMGNI 152 (462)
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHcc--c---------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHH
Confidence 99999999999988888877764210 0 01578899999999998 66778888999
Q ss_pred hccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406 213 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (356)
Q Consensus 213 ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~ 249 (356)
+++||+++ +|.+.+++....++|..+++.+.
T Consensus 153 s~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 153 SFFFPKAK------QGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999876 89999988655666665554444
No 62
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.58 E-value=4e-13 Score=134.82 Aligned_cols=178 Identities=15% Similarity=0.112 Sum_probs=129.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~ 141 (356)
+++.+.++.+..++..+....+....+ .+..+ .+.+..+.+++.+.+.++..++.+++|+++||+ |||+++.+
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~ 91 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence 344444455555554444433333223 33332 234556678899999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (356)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~ 221 (356)
+.+++.++.+++.++... .+ ..+...++++|++.|++.|+..+..+.+++|.+|++.
T Consensus 92 ~~~~~~v~~~~~~~~~~~---~~-------------------~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~- 148 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGS---SP-------------------KSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW- 148 (502)
T ss_pred HHHHHHHHHHHHHHccCc---cc-------------------chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh-
Confidence 999999988877764210 00 0135789999999999999999999999999999887
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------hcchhHHHHHHHHHHHHHHH
Q 018406 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----------------------EHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~-----------------------~~gw~~~f~i~~~~~~i~~~ 274 (356)
|+...++++....+|..+++.+..++.. ..+||+.|.+.++..++.++
T Consensus 149 -----Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 149 -----RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888887765432 13699998766655544333
No 63
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.57 E-value=3.5e-14 Score=135.27 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=129.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccc
Q 018406 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (356)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (356)
...++.+++|++..+.+.+.+++.++..++.++.|+++||+ |||++++++.++..++.+++.++.
T Consensus 17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~-------------- 81 (379)
T TIGR00881 17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST-------------- 81 (379)
T ss_pred hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh--------------
Confidence 44578889999999999999999999999999999999998 999999999999988888877653
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH-HHHH
Q 018406 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVV 250 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p-~i~~ 250 (356)
+.+.+++++++.|++.+...+...++++|.+|+++ |+...++++.+..+|..+++ ++..
T Consensus 82 --------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 141 (379)
T TIGR00881 82 --------------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLF 141 (379)
T ss_pred --------------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHH
Confidence 47788899999999999999999999999999876 88888999999999999999 5666
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 251 YIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 251 ~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
.+.+..+|++.|++.+++.++..++.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (379)
T TIGR00881 142 GIAELYSWHWVFIVPGIIAIIVSLIC 167 (379)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 77777899999988776655444333
No 64
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.57 E-value=1.1e-13 Score=136.95 Aligned_cols=152 Identities=11% Similarity=0.054 Sum_probs=120.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 018406 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (356)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (356)
....|+.++ |++..+.+++.+++.++..++.+++|+++||+ |||++++++.++..++.+.+.+... .
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~---~-------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW---A-------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc---c--------
Confidence 344577777 99999999999999999999999999999998 9999999999998888877765421 0
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH-HHHHHH
Q 018406 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLV 249 (356)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~-i~p~i~ 249 (356)
..+...+++.+++.|++.+...+.......|++|+++ |+..+++++.+.++|+. ++|++.
T Consensus 117 -------------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~ 177 (452)
T PRK11273 117 -------------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFL 177 (452)
T ss_pred -------------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHH
Confidence 0146677888999999998888888888999999776 89999999999998874 456544
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 250 VYIQMEHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 250 ~~i~~~~gw~~~f~i~~~~~~i~~~ 274 (356)
..+....+|++.|++.+++.++..+
T Consensus 178 ~~~~~~~gw~~~f~i~~~~~~~~~~ 202 (452)
T PRK11273 178 LGMAWFNDWHAALYMPAFAAILVAL 202 (452)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3343345899999987766554433
No 65
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.57 E-value=2.8e-14 Score=146.78 Aligned_cols=207 Identities=15% Similarity=0.120 Sum_probs=150.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
..+++.+++.+....+......++.......+.++|+++..+.+++.+.+.++..++.++.|+++||+ ||++.+.++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~l 106 (633)
T TIGR00805 28 FSKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCA 106 (633)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHH
Confidence 34566555555545555555556666677788999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccc-cC-------------CCCCCccccccc-------cCCCCCcc--hhhHHHHHHHHHHHHHhh
Q 018406 145 IYLAGLTGITLCATMKV-FM-------------PNQDNCDRISQL-------LGSCEPAK--SWQMLYLYTVLYITGFGA 201 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~-~~-------------~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~~~l~gig~ 201 (356)
++.+|.+++++...+.. .. .+.+.|...... ...|...+ .....+++++|++.|+|.
T Consensus 107 l~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~ 186 (633)
T TIGR00805 107 IMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA 186 (633)
T ss_pred HHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC
Confidence 99999988876531100 00 000122100000 00122221 123567889999999999
Q ss_pred hchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------------c-hh
Q 018406 202 AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---------------------G-WG 259 (356)
Q Consensus 202 g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~---------------------g-w~ 259 (356)
+...+...+++.|.+|+++ ++...++++.+..+|.++|+++++++.+.+ | |+
T Consensus 187 ~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 187 TPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred CcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 9999999999999999887 999999999999999999999999887543 2 66
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 018406 260 SAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 260 ~~f~i~~~~~~i~~~~~~~ 278 (356)
.+|.+.+++.++..+.++.
T Consensus 261 l~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFF 279 (633)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7777766665554444333
No 66
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.57 E-value=1.8e-13 Score=133.71 Aligned_cols=171 Identities=19% Similarity=0.153 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (356)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~ 154 (356)
+...++..+........++.+ .++++.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~~~ 100 (417)
T PRK10489 23 FIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIGLA 100 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHHHH
Confidence 333445545544344444544 456788999999999999999999999999999998 999999988887777666554
Q ss_pred HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 018406 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (356)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~ 234 (356)
+.... . ..+.+.+++.+++.|++.+...+...+++.|.+|+++ +++..+++
T Consensus 101 ~~~~~----~-------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 151 (417)
T PRK10489 101 LNAFL----P-------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAIT 151 (417)
T ss_pred HHHHc----C-------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHH
Confidence 32110 0 0146777888999999988888888889999998765 88888998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 235 ~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
+...++|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus 152 ~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 152 MLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988899999988776655554443
No 67
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.57 E-value=7.1e-14 Score=138.64 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=125.5
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCC
Q 018406 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (356)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (356)
+++++..+.+.+.+.+.+++.++.+++|+++||+ |||+++.++.++..++.+++..+..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6889999999999999999999999999999998 9999999999888877766544321
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Q 018406 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-G 257 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~-g 257 (356)
.....+++.|++.|++.++..+....+++|.+|+++ |+.+.++++.+..+|..+++.+.+++.+.. |
T Consensus 129 ------~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~g 196 (465)
T TIGR00894 129 ------GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGG 196 (465)
T ss_pred ------cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 135678889999999999999999999999999877 999999999999999999999999999884 9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 018406 258 WGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 258 w~~~f~i~~~~~~i~~~~~ 276 (356)
|++.|++.+++.++..++.
T Consensus 197 w~~~f~i~~~~~~~~~~~~ 215 (465)
T TIGR00894 197 WPMIFYVFGIVGCAWSLLW 215 (465)
T ss_pred CCeehhhhhHHHHHHHHHH
Confidence 9999998877655444433
No 68
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.56 E-value=3.2e-13 Score=134.26 Aligned_cols=176 Identities=16% Similarity=0.070 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+.+|.+.+..++....++++..+++.|+++.+|++..+++.......++..++.+++|+++||+ |||+.+.+...+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 4567777888888888888888999999999999999999999999999999999999999998 998877665444443
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+..++.+.. . .+....++.+++.|++..+..........|.+|++. ++
T Consensus 337 ~~~~~~~~~------~--------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g 384 (467)
T PRK09556 337 IFTLGVYQH------A--------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IG 384 (467)
T ss_pred HHHHHHHHh------c--------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HH
Confidence 332222211 0 024445566666675544444444466679999877 99
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHh------------hcchhHHHHHHHHHHHHHHHHHH
Q 018406 229 RFFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 229 ~~~~~~~~~~~i-G~~i~p~i~~~i~~------------~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
.+.++.+...++ |++++|.+.|++.+ ..+|+..|++..++.+++++..+
T Consensus 385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 999999988886 77999999999999 56899999888777766655444
No 69
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.55 E-value=1.7e-12 Score=126.14 Aligned_cols=174 Identities=11% Similarity=0.084 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+..+..+...++....++.+..+++.|+++++|++..+++.+.....++..++.+++|+++||+ |||+.+..+.+..++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~~~ 294 (393)
T PRK15011 216 RDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAGVC 294 (393)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence 3333343333444444555566788899999999999988888887788888999999999998 999988776655544
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
....+.... +...+++.+++.+++.|...+....+..|.+|+ . ++
T Consensus 295 ~~~~~~~~~----------------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g 339 (393)
T PRK15011 295 FYAGMLMAH----------------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AG 339 (393)
T ss_pred HHHHHHHHh----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cc
Confidence 433322211 344555666777666666666667778888874 3 67
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
+..++++...++|..+++.+.+++.+..||+..|.+..++.+++++..+.
T Consensus 340 ~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 340 SATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 88888888889999999999999999899999998877776666655544
No 70
>PRK15075 citrate-proton symporter; Provisional
Probab=99.55 E-value=5.8e-13 Score=131.11 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=126.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHH-----HHHHHHHHHHHHHHhhcchhHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN-AVNNFLG-----ISQASSVLGGFLADAYLGRYWT 138 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~-~~~~~~~-----~~~~~~~~~G~lsD~~~GRr~~ 138 (356)
..+|+.....++..++..+....+. .+..++.++++.+..+.+. ..+.... ...++.++.|+++||+ |||++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~ 88 (434)
T PRK15075 11 ESKARAILRVTSGNFLEMFDFFLFG-FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKG 88 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHH
Confidence 4566677777777777777776554 4555778889887766433 3332222 2246788999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 018406 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (356)
Q Consensus 139 i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~ 218 (356)
++++.+++.++.+++.++.+...+. ......++++|++.|++.++..+....+++|.+|+
T Consensus 89 l~~~~~~~~~~~~l~~~~~~~~~~~--------------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~ 148 (434)
T PRK15075 89 LIVTLSIMASGTLLIAFVPGYATIG--------------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP 148 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHH--------------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence 9999999999988887653100000 00012568899999999999888889999999998
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------HhhcchhHHHHHHHH
Q 018406 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGSAFGALAI 267 (356)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i--------~~~~gw~~~f~i~~~ 267 (356)
++ |+...+++....++|..+++.+++.+ .+..|||+.|++..+
T Consensus 149 ~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 149 GR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred cc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 87 89999988887777777777766655 246799999987543
No 71
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.54 E-value=2.2e-13 Score=134.30 Aligned_cols=153 Identities=11% Similarity=0.056 Sum_probs=123.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccc
Q 018406 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (356)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (356)
...++++ +|++..+.+++.+++.++..++.+++|+++||+ |||+++.++.++..++.+++..... .
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~---~--------- 114 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPW---A--------- 114 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccc---c---------
Confidence 3446665 599999999999999999999999999999998 9999999998888887776554311 0
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018406 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~ 251 (356)
..+...+++.+++.|++.|...+.....+.|.+|+++ |+..+++++...++|+.+++.+.++
T Consensus 115 ------------~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 115 ------------TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred ------------cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHH
Confidence 0135667788999999999888888899999999887 9999999999999999999887776
Q ss_pred HH-hhcchhHHHHHHHHHHHHHHHHH
Q 018406 252 IQ-MEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 252 i~-~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
+. ...+|++.|++.+++.++..++.
T Consensus 177 ~~~~~~~w~~~f~~~~~~~~i~~~~~ 202 (438)
T TIGR00712 177 GMAWFNDWHAALYFPAICAIIVALFA 202 (438)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 44 45689999998777765544433
No 72
>PRK09952 shikimate transporter; Provisional
Probab=99.54 E-value=6.7e-13 Score=130.94 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=127.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhcchhH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--HKSFADSSNAV-----NNFLGISQASSVLGGFLADAYLGRYW 137 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~~s~~~a~~~~-----~~~~~~~~~~~~~~G~lsD~~~GRr~ 137 (356)
..+|+.++...+..+++.+....+....+.++.+++ +.++.. +.+. .+..++..++.++.|+++||+ |||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~ 95 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKR 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHH
Confidence 344566677777777777776655444455566555 666653 3332 234455668888899999998 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 018406 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (356)
Q Consensus 138 ~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~ 217 (356)
++.++.+++.++.++++++.+.... .-.....+++.|++.|++.|+..+....++.|.+|
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p 155 (438)
T PRK09952 96 MLMLTVWMMGIATALIGLLPSFSTI--------------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP 155 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHH--------------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC
Confidence 9999999999998888775310000 00012357889999999999999999999999999
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--------hcchhHHHHHHHHHHH
Q 018406 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM--------EHGWGSAFGALAIAMG 270 (356)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~--------~~gw~~~f~i~~~~~~ 270 (356)
+++ |+...+..+.+..+|..++..+..++.. ..|||+.|.+.++..+
T Consensus 156 ~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 156 KNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred CCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 876 8888888888888888888766665542 4689999988766543
No 73
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.4e-13 Score=130.73 Aligned_cols=172 Identities=13% Similarity=0.125 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVN---MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+.++...++...++|.+--+ ..+++.++.++|.++.+.+.+++.+++.++-.+.|.++||. +.|..+.+++++..+
T Consensus 28 ~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsai 106 (448)
T COG2271 28 IQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHHH
Confidence 67777778888888876554 45688889999999999999999999999999999999998 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
..+++.++. +...+.+..++.|+.+|.-.|+....++..|+.++ ||
T Consensus 107 ~nil~Gfs~----------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG 152 (448)
T COG2271 107 VNILFGFSP----------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RG 152 (448)
T ss_pred HHHHHhhhh----------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cC
Confidence 888888764 47788888899999999999999999999999888 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 229 RFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~--~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
+..++++.+-|+|+++.|.+. +++..+.+|+.+|++++++.++..++++.
T Consensus 153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~ 204 (448)
T COG2271 153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF 204 (448)
T ss_pred ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 89988889999999999986655544443
No 74
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.53 E-value=1.5e-12 Score=126.98 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCCChHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 018406 90 VNMVTFMFYVMHKSFAD-SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (356)
Q Consensus 90 ~~l~~yl~~~~~~s~~~-a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 168 (356)
+++..|+.+++|++..+ .+.+.+++..++.++.+++|+++||+ |-|+++.++.+...+..+++.++.
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~----------- 113 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT----------- 113 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 34566899999999999 99999999999999999999999998 999999999999999888888753
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 018406 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i 248 (356)
+...+.+.|++.|++.|+.. ....+++..||+++ |+++.+++..+..+|.++++.+
T Consensus 114 -----------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L 169 (511)
T TIGR00806 114 -----------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVL 169 (511)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999988 99999999999776 9999999999999999999999
Q ss_pred HHHHHhhcchhHHHH---HHHHHHHHHHHHHHh
Q 018406 249 VVYIQMEHGWGSAFG---ALAIAMGISNMLFFI 278 (356)
Q Consensus 249 ~~~i~~~~gw~~~f~---i~~~~~~i~~~~~~~ 278 (356)
+++ ...+||++-+. |..+...+++++-++
T Consensus 170 ~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~ 201 (511)
T TIGR00806 170 GQL-LVTLGWISYSTLNIISLVFMTFSVFLALF 201 (511)
T ss_pred HHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHh
Confidence 999 45678986543 444445555544444
No 75
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.52 E-value=3.5e-12 Score=123.88 Aligned_cols=174 Identities=13% Similarity=0.142 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIA-IFTTIYL 147 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~lsD~~~GRr~~i~-~~~~l~~ 147 (356)
..+..++..++..+....+...++.|+.+++|.+..+.+.+.+.. ..+..++++++++ +||+ |||+.++ .+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 16 TSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLGV 93 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHHH
Confidence 346666667888888777888899999999999999999998765 4566666666666 9998 9988754 4445444
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHH-HHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTV-LYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
++..+..++. +...+++. +++.+++ +...+....+..|..+.+. +.
T Consensus 94 ~~~~~~~~~~----------------------------~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~ 140 (393)
T PRK15011 94 LACTLFAWNR----------------------------NYFVLLFVGVFLSSFG-STANPQMFALAREHADKTG----RE 140 (393)
T ss_pred HHHHHHHHhh----------------------------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhcc----ch
Confidence 5554444432 34444444 3444444 4556666777777665443 01
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
.+.+.++.+.+.++|..++|.+++++.++.||++.|++.++..++..+....
T Consensus 141 ~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 141 AVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 2344567788899999999999999999999999998877765554444333
No 76
>TIGR00898 2A0119 cation transport protein.
Probab=99.52 E-value=3.5e-13 Score=134.92 Aligned_cols=144 Identities=12% Similarity=0.105 Sum_probs=123.4
Q ss_pred HHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccc
Q 018406 95 FMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (356)
Q Consensus 95 yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (356)
.+.++++++ ..+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.++.+++.
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~-------------- 178 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP-------------- 178 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence 456789998 88999999999999999999999999998 999999999999888887776642
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018406 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~ 251 (356)
+...+++.|++.|++.++..+....++.|.+|++. |+...+++..+..+|.++++.++.+
T Consensus 179 --------------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~ 238 (505)
T TIGR00898 179 --------------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYF 238 (505)
T ss_pred --------------cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999877 8888888888889999999987766
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 252 IQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 252 i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
+.+ ||+.|++.++..++.++..
T Consensus 239 ~~~---wr~~~~~~~i~~~~~~~~~ 260 (505)
T TIGR00898 239 IPD---WRWLQLAVSLPTFLFFLLS 260 (505)
T ss_pred hhH---HHHHHHHHHHHHHHHHHHH
Confidence 543 9999988777655554443
No 77
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.52 E-value=1.7e-12 Score=142.15 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~--~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
.+..+..+...++..+...++...+..++...++.+. ...+++.+++.++..++++++|+++||+ |||++++++.++
T Consensus 8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~ 86 (1146)
T PRK08633 8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF 86 (1146)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence 3344555556666555555555556666666676654 3468888899999999999999999998 999999999887
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
.+++.++..++.. ..+.+.++++|++.|++.+...+...++++|.+++++
T Consensus 87 ~~~~~~~~~~~~~-------------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~----- 136 (1146)
T PRK08633 87 EVGLTLLIVLAYY-------------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN----- 136 (1146)
T ss_pred HHHHHHHHHHHHH-------------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc-----
Confidence 7666655544321 0147888999999999999999999999999999877
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~ 255 (356)
|+.+++++..+.++|.++++.+++++.+.
T Consensus 137 -r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 137 -LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred -chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998775
No 78
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.51 E-value=4.5e-13 Score=128.31 Aligned_cols=172 Identities=14% Similarity=0.048 Sum_probs=130.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
++++.++......++....++.+..+++.|+++++|.+..+.+.......++..++.+++|+++||+ |||+.+.++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~ 294 (394)
T TIGR00883 216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVL 294 (394)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence 3344566677777777788888888899999889999999999999999999999999999999998 999988766554
Q ss_pred HHHHHH-HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 146 YLAGLT-GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 146 ~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
..+..+ ....... . .+...+++..++.+++.+...++..++++|.+|++.
T Consensus 295 ~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~---- 345 (394)
T TIGR00883 295 AALLAVPLLMALLD-----S--------------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV---- 345 (394)
T ss_pred HHHHHHHHHHHHhc-----C--------------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc----
Confidence 443322 2211110 0 134555666777888888888899999999999877
Q ss_pred hhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHH
Q 018406 225 THLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 269 (356)
Q Consensus 225 ~~r~~~~~~-~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~ 269 (356)
|++.++. ++++..+|+.++|.+.+++.++.| |++.+++..++.
T Consensus 346 --~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 346 --RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred --eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 7777776 456667889999999999999888 877666555443
No 79
>PRK09952 shikimate transporter; Provisional
Probab=99.51 E-value=4.4e-12 Score=125.16 Aligned_cols=182 Identities=12% Similarity=0.004 Sum_probs=130.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
++++....++...++..+.+|.+..+++.|+++.+|++......+.........++.+++|+++||+ |||++++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~ 325 (438)
T PRK09952 247 RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALI 325 (438)
T ss_pred HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHH
Confidence 3445445555566777788888889999999999999887665555566667778889999999998 999998888766
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
..++.+.+..... .. .....+++..++.+++.+...+...++.+|.+|.+.
T Consensus 326 ~~~~~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~----- 376 (438)
T PRK09952 326 GTLSAFPFFMALE-----AQ-------------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY----- 376 (438)
T ss_pred HHHHHHHHHHHHH-----cC-------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch-----
Confidence 5554433332210 00 023334445566678878778888999999999876
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHHh
Q 018406 226 HLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 226 ~r~~~~~~-~~~~~~iG~~i~p~i~~~i~~~~--gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
|++..++ ++++..+|++++|.+.+++.+.. +|...+.+.+++.+++++..+.
T Consensus 377 -r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~ 431 (438)
T PRK09952 377 -RYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL 431 (438)
T ss_pred -hHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 7777776 44556689999999999998754 3777777776666666555443
No 80
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.50 E-value=1.6e-12 Score=126.31 Aligned_cols=177 Identities=10% Similarity=-0.112 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.+|......++...+...+..+++.|+++++|++..+.+.+.+++.++..++.+++|+++||+ |||+.++.+.++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 467788888888888888888999999999999999999999999999999999999999998 9999998877666554
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
..........+... ......+++++++.+++.+...+....+..|.-++ ++.
T Consensus 82 ~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~ 133 (396)
T TIGR00882 82 FAPFFIYVFGPLLQ--------------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNF 133 (396)
T ss_pred HHHHHHHHhhhHHH--------------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--------ccc
Confidence 43322111000000 00123345566777888777777776666554221 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
.++......++|..++|.+++.+.+ .+|++.|++.+++.++..++.
T Consensus 134 ~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~ 179 (396)
T TIGR00882 134 EYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLL 179 (396)
T ss_pred ccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHH
Confidence 4556666778999999999887754 599999988777655544433
No 81
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.50 E-value=1.5e-12 Score=127.43 Aligned_cols=181 Identities=8% Similarity=-0.137 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+..|.+.+..++..++++.+...++.|+++++|++..+.+.+.+.+.++..++++++|+++||+ |||++++++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 3467777777787787777889999999999999999999999999999999999999999998 999999887666554
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+...+......+. .......+.++.++..+...........+..+... ++++
T Consensus 89 ~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g 140 (420)
T PRK09528 89 LFGPFFIYVFAPL------------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSG 140 (420)
T ss_pred HHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhcc
Confidence 4432221100000 00001112222222222222222222222222111 1255
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (356)
..++..+...++|..++|.+++++.+ .+|++.|++.+++.++.+++.+..
T Consensus 141 ~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 141 FEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred ccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcc
Confidence 66677777788999999999998876 489999988776665555444433
No 82
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.50 E-value=1.9e-12 Score=130.32 Aligned_cols=159 Identities=18% Similarity=0.260 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchh
Q 018406 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (356)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (356)
+.+++.+.+.+++.++.++.|+++|++ |||++++++.+++.+|.++++++.
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~---------------------------- 140 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP---------------------------- 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh----------------------------
Confidence 348999999999999999999999998 999999999999999999999874
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHH
Q 018406 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--HGWGSAFG 263 (356)
Q Consensus 186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~--~gw~~~f~ 263 (356)
+..+++++|++.|+|.|+.....+.+++|..|++. |+...+.+++..++|..++..+ ++...+ .+||..++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~-~~~~~~~~~~Wr~~~~ 213 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCI-NYGTSKVYAGWRIPLG 213 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHH-hhhhccCCccHHHHHH
Confidence 58999999999999999999999999999999888 9999999999999999999644 444443 48998877
Q ss_pred HHHHHHHHHHHHHHh--hcccccccCCCCChhHHHHHHHHHH
Q 018406 264 ALAIAMGISNMLFFI--GTPLYRHRLPGGSPLTRVAQVLVAA 303 (356)
Q Consensus 264 i~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~~~ 303 (356)
+..+..++..+.+++ ..|++..+ .....+..+++...
T Consensus 214 ~~~i~~~~~~~~~~~~pesp~~L~~---~g~~~~a~~~l~~l 252 (513)
T KOG0254|consen 214 LALIPAVILALGMLFLPESPRWLIE---KGRLEEAKRSLKRL 252 (513)
T ss_pred HHHHHHHHHHHHHHhCCCChHHHHH---cCChHHHHHHHHHH
Confidence 766655444444322 23333322 33444445554443
No 83
>PRK03699 putative transporter; Provisional
Probab=99.49 E-value=3.1e-12 Score=124.22 Aligned_cols=171 Identities=15% Similarity=0.153 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.++...+..++..+..+++..+++.|+++.+|++..+++...+.+.++..++.+++|+++||+ |||+.+.....+..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~ 284 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVL 284 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHH
Confidence 455555666666677778889999999999999999999999999999999999999999998 9999888777665554
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+++.... +...+.+..++.|++.++..+...++..+..+.+ ++.
T Consensus 285 ~~~~~~~~----------------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~ 329 (394)
T PRK03699 285 MYLFVNTD----------------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPK 329 (394)
T ss_pred HHHHHHcC----------------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHH
Confidence 44433221 2334445566778877777777777888877643 344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
..++.+....+|..++|.+.+++.+..|++..|++..++.+++++..
T Consensus 330 ~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 330 LVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 55667777889999999999999999999989887777665554433
No 84
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.49 E-value=3.3e-12 Score=132.73 Aligned_cols=131 Identities=9% Similarity=0.023 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHH
Q 018406 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (356)
Q Consensus 111 ~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (356)
..+..++..++.+++|+++||+ |||++++++.++..++.+++.+.. +...+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~----------------------------s~~~l 651 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN----------------------------SESAM 651 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc----------------------------cHHHH
Confidence 4455678889999999999998 999999999888888777666542 23445
Q ss_pred HHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (356)
Q Consensus 191 ~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~ 270 (356)
++.+++.+++.++..+...++.+|++|++. |++.+++.+....+|++++|.+++++.+. +...+|.+.+++.+
T Consensus 652 l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~ll 724 (742)
T TIGR01299 652 IALLCLFGGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALA 724 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence 556667777777778889999999999887 99999999999999999999999988764 34566766666655
Q ss_pred HHHHHHH
Q 018406 271 ISNMLFF 277 (356)
Q Consensus 271 i~~~~~~ 277 (356)
++.++.+
T Consensus 725 l~~ll~~ 731 (742)
T TIGR01299 725 CGGLLAL 731 (742)
T ss_pred HHHHHHH
Confidence 5444433
No 85
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.49 E-value=3e-12 Score=121.84 Aligned_cols=186 Identities=14% Similarity=0.090 Sum_probs=151.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+.++|+++...+.....-+.+ .+...+..++.+++|+|..|.++++.+..+...+.-++-|++.||+ |.|++..++.+
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW-~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~ 87 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVW-TLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML 87 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHH-HHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence 455666666655555544444 4566678888899999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+.++-.+.++++... .+.+.+++..++.|++ |+..+...++.+..||+++
T Consensus 88 l~~IP~~~~~~a~~~-------------------------~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~---- 137 (417)
T COG2223 88 LLLIPCLGLAFAVTY-------------------------PSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEK---- 137 (417)
T ss_pred HHHHHHHHHHHHccC-------------------------CchHHHHHHHHHHhcc-cceehcccccccccCChhh----
Confidence 999888888887531 1346788888899998 5667788889999999887
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHHHHHHHHhhcccccc
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFFIGTPLYRH 285 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g---w~~~f~i~~~~~~i~~~~~~~~~~~~~~ 285 (356)
.|.+.+++. ..|+|..+..+++..+....| |+...++..+.+++..+.+++..+..++
T Consensus 138 --qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~ 198 (417)
T COG2223 138 --QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE 198 (417)
T ss_pred --hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 899999999 899999999999999988888 8888887777777767666666554444
No 86
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.49 E-value=6.3e-13 Score=133.89 Aligned_cols=167 Identities=14% Similarity=0.168 Sum_probs=135.1
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccC
Q 018406 98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG 177 (356)
Q Consensus 98 ~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (356)
+.++.+.....+..+++.++..+|++++|+++|++ |||++++++.++.+++.++.+++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~-------------------- 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP-------------------- 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 55677888899999999999999999999999996 999999999999999998887763
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018406 178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g 257 (356)
++..+++.|++.|++.++...+...+++|.++++. |+.+..+ ......++.+++.+++|+.. +
T Consensus 170 --------~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~ 232 (521)
T KOG0255|consen 170 --------NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--D 232 (521)
T ss_pred --------cHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--h
Confidence 58999999999999999999999999999999988 8888888 77778888889989999887 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHh--hcccccccCCCCChhHHHHHHHHHHHh
Q 018406 258 WGSAFGALAIAMGISNMLFFI--GTPLYRHRLPGGSPLTRVAQVLVAAFR 305 (356)
Q Consensus 258 w~~~f~i~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~~~~~ 305 (356)
|||.+++..+..++.++..++ ..+++...+ +...+..+.+....+
T Consensus 233 Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~---g~~~~a~~~l~~~a~ 279 (521)
T KOG0255|consen 233 WRWLFWIISIPSGLFLLLWFLPPESPRWLLSK---GRIDEAIKILKKIAK 279 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcChHHHHHc---CchHHHHHHHHHHHh
Confidence 999999877776555444222 233443332 233455556555544
No 87
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.48 E-value=2.5e-12 Score=122.39 Aligned_cols=169 Identities=15% Similarity=0.076 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
.+......++..+..+.+....+.|. +++|.+..+.+.+...+.++..++.++.|+++||+ |||+.+.++.++..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 284 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGM 284 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHH
Confidence 34444444444444444555556664 56889988889999999999999999999999998 99999998888888777
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+++..... .....+++..++.+++.+...+..+.+.+|.+|+++ +++.
T Consensus 285 ~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~ 332 (377)
T TIGR00890 285 AAMLFIPM--------------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAAN 332 (377)
T ss_pred HHHHHccc--------------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhH
Confidence 66554311 012334455667788878777788889999999877 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~ 273 (356)
+++++....+|..++|.+.+++.+..||++.|.+.+++.++++
T Consensus 333 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 333 YGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988777665543
No 88
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.48 E-value=6e-12 Score=122.09 Aligned_cols=170 Identities=13% Similarity=0.069 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhh
Q 018406 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT 158 (356)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~ 158 (356)
++..+.++.+..+++.|+.+ .|++ ..+.....+.++..++.++.|+++||+ |||+.+.++.++..++.+.+....
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~- 300 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc-
Confidence 33445555666777777753 4553 345566677788888999999999998 999999888887777766555431
Q ss_pred ccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHH
Q 018406 159 MKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV 238 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~ 238 (356)
+...++++.++.|++.++..+.......|.+|++. +++.+++++...
T Consensus 301 ---------------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 347 (399)
T PRK05122 301 ---------------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFL 347 (399)
T ss_pred ---------------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 34556677788999988877777777888888665 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccccc
Q 018406 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (356)
Q Consensus 239 ~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (356)
.+|..+++.+.+++.+..||++.|++.+++.++++++.....++.+++
T Consensus 348 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 348 DLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999999999999999999988777776666555544444433
No 89
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.48 E-value=5.2e-12 Score=118.80 Aligned_cols=171 Identities=20% Similarity=0.244 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAG 149 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~-~i~~~~~l~~~g 149 (356)
++......++..........+++.|+.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+.++.++..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 255 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALG 255 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Confidence 34444445555666666777788888877799999999999999999999999999999998 9999 999998888888
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+.+.... +...+++..++.+++.+...+....+..|.+|+++ |++
T Consensus 256 ~~~~~~~~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~ 301 (352)
T cd06174 256 LLLLALAP----------------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGT 301 (352)
T ss_pred HHHHHHhc----------------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHH
Confidence 77766532 35667788889999999999999999999999866 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
.++.++...++|..+++.+.+++.+..+|++.|.+.+++.+++.++.
T Consensus 302 ~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998999999998888776665543
No 90
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.47 E-value=1.1e-12 Score=125.39 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=120.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 018406 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (356)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (356)
..+...+.+++|++..+.+++.+++.++..++.++.|+++||+ |||+++.++.++..++.+.. ...
T Consensus 20 ~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~------------ 85 (355)
T TIGR00896 20 GPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP------------ 85 (355)
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc------------
Confidence 4455567889999999999999999999999999999999998 99999999988877776655 221
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (356)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~ 249 (356)
+...+++.|++.|+|.+...+..+....|.++ ++ |+...++++.+.++|..+++.+.
T Consensus 86 ----------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~ 142 (355)
T TIGR00896 86 ----------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAAT 142 (355)
T ss_pred ----------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 36677889999999998888888888888886 34 78999999999999999999998
Q ss_pred HHHHhhcc--hhHHHHHHHHHHHHH
Q 018406 250 VYIQMEHG--WGSAFGALAIAMGIS 272 (356)
Q Consensus 250 ~~i~~~~g--w~~~f~i~~~~~~i~ 272 (356)
+++.+..+ |++.|.+.+++.++.
T Consensus 143 ~~l~~~~~~~w~~~f~~~~~~~~~~ 167 (355)
T TIGR00896 143 VPLAQHSGGHWQQALAWWALPALLA 167 (355)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 88877653 888887665544333
No 91
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.47 E-value=1e-11 Score=124.33 Aligned_cols=177 Identities=14% Similarity=0.102 Sum_probs=132.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchhHH-HHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWT-IAI 141 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~----~GRr~~-i~~ 141 (356)
+||+.+.++...+...+..+.....++.|+. +.|.+..+.+....+... +++.+++|+++||+ +|||+. +++
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~gpl~Dr~~~~~~Grrr~~ll~ 86 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLVGQA--YVFKFLWSPLMDRYTPPFLGRRRGWLLA 86 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCCchHHHHH
Confidence 3444566666666676777666677777765 568898888876322222 36889999999995 288886 556
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (356)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~ 221 (356)
+.++..++.+.+++.. + ..+.+.+.+.+++.+++.+...+...++.+|.+|+++
T Consensus 87 ~~i~~~~~~~~~a~~~------~-------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~- 140 (491)
T PRK11010 87 TQLLLLVAIAAMGFLE------P-------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE- 140 (491)
T ss_pred HHHHHHHHHHHHHHcC------C-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh-
Confidence 6666666666665532 1 1256778888889999999989999999999999776
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHH
Q 018406 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~-~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
|+...++...+..+|..+++.+..++.+ ..|||..|++.+++.++..+..+
T Consensus 141 -----rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 141 -----RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988 46999999988877665544433
No 92
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.47 E-value=7.5e-12 Score=137.34 Aligned_cols=133 Identities=17% Similarity=0.087 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH--HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCc
Q 018406 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI--YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPA 182 (356)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (356)
...+++.+++.+...++.+++|+++||+ |||+++.....+ .+....+..+..
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~------------------------- 105 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL------------------------- 105 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Confidence 3467777889999999999999999998 999986442222 222221222211
Q ss_pred chhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 018406 183 KSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262 (356)
Q Consensus 183 ~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f 262 (356)
.+.+.++++++++|++.+...+...+++.|++++++ ++.++++.+.+.++|.++||.+++++....+|++.|
T Consensus 106 --~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~ 177 (1140)
T PRK06814 106 --NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILV 177 (1140)
T ss_pred --hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 157889999999999999999999999999999877 999999999999999999999999999999999888
Q ss_pred HHHHHHHHH
Q 018406 263 GALAIAMGI 271 (356)
Q Consensus 263 ~i~~~~~~i 271 (356)
.+.+++.++
T Consensus 178 ~~~~~~~~~ 186 (1140)
T PRK06814 178 ALLMGIAVL 186 (1140)
T ss_pred HHHHHHHHH
Confidence 444443333
No 93
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.46 E-value=7.2e-12 Score=125.04 Aligned_cols=150 Identities=16% Similarity=0.119 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 018406 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (356)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~ 166 (356)
++..+++.|+++++|++..+++.+.+...++..++.+++|+++||+ |||++++++.++..++.+++.....
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4566789999889999999999999999999999999999999997 9999988877665554443332110
Q ss_pred CCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 018406 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (356)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p 246 (356)
...+.+.+..++.++...+..+..++++.|.+|++. +++.+++++....+|+.++|
T Consensus 364 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp 419 (496)
T PRK03893 364 ------------------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAP 419 (496)
T ss_pred ------------------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHH
Confidence 123333333444333333445677788899999776 89999999998999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHH
Q 018406 247 TLVVYIQMEHGWGSAFGALAIAM 269 (356)
Q Consensus 247 ~i~~~i~~~~gw~~~f~i~~~~~ 269 (356)
++.+++.+..||+..+.+.+++.
T Consensus 420 ~l~g~l~~~~g~~~~~~~~~~~~ 442 (496)
T PRK03893 420 ILGALIAQRLDLGTALASLSFSL 442 (496)
T ss_pred HHHHHHhccCChHHHHHHHHHHH
Confidence 99999999999887776544443
No 94
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.46 E-value=1.2e-11 Score=118.51 Aligned_cols=159 Identities=11% Similarity=0.070 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018406 83 MAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (356)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~ 162 (356)
...+....+++.|+++++|.+..+.+.+.....+...++.+++|+++||+ |||+++.++.++..++.+......
T Consensus 213 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~----- 286 (375)
T TIGR00899 213 GCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN----- 286 (375)
T ss_pred HHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH-----
Confidence 33344455678888889999999988888777777788889999999998 999998887766554443333221
Q ss_pred CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 018406 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~ 242 (356)
+.+.+++..++.|++.+...+....+..|.+|++ +++.+++++...++|.
T Consensus 287 -----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~ 336 (375)
T TIGR00899 287 -----------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGW 336 (375)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHH
Confidence 3455566677778888877777778888888743 5688899999899999
Q ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 243 IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 243 ~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
.++|.+.+++.+..||+..|++.+++.+++.++..
T Consensus 337 ~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 337 IIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888777666655543
No 95
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.45 E-value=2.3e-12 Score=129.77 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 018406 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (356)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (356)
.....|+.+++|-+ ....++.+.+.++..+..++.|.|||.+ |||+.++++.++.++|.++++.+.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 34556888888876 5567788889999999999999999997 999999999999999999988652
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (356)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~ 249 (356)
+...++++..+.|+|.|... .....++|..|.+. |.....+..+...+...+++.++
T Consensus 130 ----------------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia 186 (599)
T PF06609_consen 130 ----------------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIA 186 (599)
T ss_pred ----------------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHH
Confidence 57889999999999976654 45666899999776 55555555444444455667666
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 250 VYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 250 ~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
..+..+.+|||.|++.++...+++++.
T Consensus 187 ~~~~~~~~WRw~~~~~~i~~~i~~vl~ 213 (599)
T PF06609_consen 187 QLFAAHSGWRWIFYIFIIWSGIALVLI 213 (599)
T ss_pred HHhccCCCcchHHHHHHHHHHHHHHHH
Confidence 666666789999999888766665443
No 96
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.44 E-value=1.2e-11 Score=118.11 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchhHHH-HHHHHHHHHHHHHHHHHhhcccc
Q 018406 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYWTI-AIFTTIYLAGLTGITLCATMKVF 162 (356)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~----~GRr~~i-~~~~~l~~~g~~~~~~~~~~~~~ 162 (356)
+.......+.+++|++..+.+..... .+...+ .+++|+++||+ +||||.+ +++.++..+....+.+...
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc----
Confidence 33444455567899999999888655 333333 88999999997 4899975 5556666555545443210
Q ss_pred CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 018406 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~ 242 (356)
..+.+.+++..++.+++.+...+...++++|.+|+++ |+.+.++...+.++|.
T Consensus 80 ---------------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~ 132 (356)
T TIGR00901 80 ---------------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGM 132 (356)
T ss_pred ---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHH
Confidence 1245555555667778888888999999999998766 8999999999999999
Q ss_pred HHHHHHHHHHHhhcc--------hhHHHHHHHHHHHHHHHHHH
Q 018406 243 IVAFTLVVYIQMEHG--------WGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 243 ~i~p~i~~~i~~~~g--------w~~~f~i~~~~~~i~~~~~~ 277 (356)
++++.+++++....| ||..|++.+++.++.+++.+
T Consensus 133 ~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 133 LLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888 99999888777665554433
No 97
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.44 E-value=1.4e-11 Score=117.63 Aligned_cols=179 Identities=13% Similarity=0.020 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL 147 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~-i~~~~~l~~ 147 (356)
+.++...+..++.....+.+..+++.|+++.+|.+..+.+.+.....++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 4567777777788888888888899999999999999999999999999999999999999998 98861 111111111
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++.+...+....... .......+..++.+.+..+..+...++.+|.+|++. |
T Consensus 294 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 345 (399)
T TIGR00893 294 IAGLVLSLLMFATNY----------------------VNIPYAALALVALGFFGLGAGAIGWALISDNAPGNI------A 345 (399)
T ss_pred HHHHHHHHHHHHhcc----------------------chhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhH------H
Confidence 221111111000000 011222233333333333367889999999999877 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHH
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~ 276 (356)
++.+++++...++|..++|.+.+++.+..| |++.|.+.+++.+++.+..
T Consensus 346 g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 346 GLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 9988888777766555444
No 98
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.44 E-value=1.3e-11 Score=122.28 Aligned_cols=177 Identities=16% Similarity=0.121 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHH-HHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTI-AIFTTIY 146 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GRr~~i-~~~~~l~ 146 (356)
+.+|...+..++.....+++..++|.|+++++|++..+++....++.++..++.+++|+++||+. |||+.. .+...+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 44677777777777777888889999999999999999888888888899999999999999971 334332 2222233
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
.++.+.+.+.. . .+....++..++.|.+..+.......+..|.+|++.
T Consensus 333 ~~~~~~~~~~~------~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------ 380 (452)
T PRK11273 333 TIATIVYWLNP------A--------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------ 380 (452)
T ss_pred HHHHHHHHHhc------c--------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------
Confidence 33332222210 0 023333344444554433333334456679999877
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 227 LDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i-~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
+++.+++++...++|+.+ +|.+.+++.+..||++.|++.+++.+++++...
T Consensus 381 ~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 381 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 899999998888888665 799999999999999999887776665554443
No 99
>PTZ00207 hypothetical protein; Provisional
Probab=99.43 E-value=3.7e-11 Score=121.60 Aligned_cols=173 Identities=9% Similarity=-0.004 Sum_probs=125.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
.++|..+...+....+... .|++.. ....+++++|++..+.+++.++.... .++.+++|+++||+ |||++++++.+
T Consensus 24 ~~Rw~~lva~~~~~~~~g~-~y~fsv-~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~-G~R~vllig~l 99 (591)
T PTZ00207 24 PRRFALLVLGAFCSICTSF-MYAFNL-ISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYL-GPRPIFVLSMT 99 (591)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 4556555544544444433 334443 44567899999999998888774433 45666789999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
++.+|.++++++... .. . .+.+.+++.+++.|+|.+...+.....+.+.|| ++
T Consensus 100 l~~iG~ll~ala~~~-~i-~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~---- 152 (591)
T PTZ00207 100 VFCLGTLLFALTFQE-VI-E--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN---- 152 (591)
T ss_pred HHHHHHHHHHHHhcc-cc-c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh----
Confidence 999999998886320 00 0 157888999999999999888888888999997 33
Q ss_pred hhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIV-AFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i-~p~i~~~i~~~~gw~~~f~i~~~~~~i~ 272 (356)
||.+.++......+|+++ +++..+++.+ +|++.|++.+++.++.
T Consensus 153 --RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 153 --RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFFFLMSFALVV 197 (591)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHH
Confidence 899999999999999975 5555555543 4666666665554433
No 100
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.43 E-value=3.6e-11 Score=117.10 Aligned_cols=165 Identities=15% Similarity=0.126 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cchhH-HHHHHHHHHHHHHH
Q 018406 77 NEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY----LGRYW-TIAIFTTIYLAGLT 151 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~----~GRr~-~i~~~~~l~~~g~~ 151 (356)
..+...+.+.-....++.|+++ .|++..+.+.+..+... .+..+++|+++||+ +|||| .++++.++..++..
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 3444444444456678888875 59999999988666655 68899999999996 27765 67777777776666
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
.+.+.. + ..+.+.+++..++.+++.+...+...++.+|.+|+++ |+++.
T Consensus 84 ~l~~~~------~-------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~ 132 (402)
T PRK11902 84 AMAFCP------P-------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGA 132 (402)
T ss_pred HHHhcC------c-------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHH
Confidence 655431 0 0145556666666778888888999999999999876 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHH
Q 018406 232 NFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 232 ~~~~~~~~iG~~i~p~i~~~i~~~-~gw~~~f~i~~~~~~i~~~~ 275 (356)
++...+..+|..+++.++.++.+. .||+..|++.+++.++..+.
T Consensus 133 ~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 133 AVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 998888899999999888888885 49999999877766554443
No 101
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=8.4e-13 Score=124.36 Aligned_cols=163 Identities=13% Similarity=0.086 Sum_probs=139.9
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCC
Q 018406 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (356)
Q Consensus 100 ~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (356)
++-++.+.+++.....+...+..++.|.+.||+ |+|-.+++|.+++.+.++++++..
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~---------------------- 157 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN---------------------- 157 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc----------------------
Confidence 455678889999999999999999999999997 999999999999999999998853
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 018406 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 259 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~ 259 (356)
.+++++++|.++|+|.++...+..+++||.||++. +|++++++..-...+|..+||.++|.+.+..|+.
T Consensus 158 ------sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~ 226 (464)
T KOG3764|consen 158 ------SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKS 226 (464)
T ss_pred ------hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCc
Confidence 57899999999999999999999999999999887 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccc---CCCCChhHHH
Q 018406 260 SAFGALAIAMGISNMLFFIGTPLYRHR---LPGGSPLTRV 296 (356)
Q Consensus 260 ~~f~i~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~ 296 (356)
.+|.+.++++++...+.++..+.++.. .+++.+..++
T Consensus 227 aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~L 266 (464)
T KOG3764|consen 227 APFLVLAIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSL 266 (464)
T ss_pred CcHHHHHHHHHHHHHHHHheeCccccCccccccCccHHHH
Confidence 999999888777766655544433322 2444555544
No 102
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.43 E-value=2.2e-11 Score=118.38 Aligned_cols=167 Identities=10% Similarity=0.010 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (356)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~ 152 (356)
.+....++.....+.+..+++.|+.+ .|++..+.+.+...+.++..++.++.|+++||+ |||+.+.++.+...++.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~ 301 (406)
T PRK11551 224 LLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAA 301 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 33344444555666677778888764 799999999999999999999999999999998 9999988766655555444
Q ss_pred HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHH
Q 018406 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (356)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~ 232 (356)
+.... +...+++..++.|++.++..+...++..|.+|++. |++..+
T Consensus 302 ~~~~~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g 347 (406)
T PRK11551 302 LAAAP----------------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVG 347 (406)
T ss_pred HHhcC----------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhh
Confidence 33221 23445555667777777778888899999999887 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHH
Q 018406 233 FFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNML 275 (356)
Q Consensus 233 ~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~ 275 (356)
+++....+|..++|.+.+++.+..+ |...+++...+.+++++.
T Consensus 348 ~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 348 AAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred HHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988754 555555554444444333
No 103
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.43 E-value=4.2e-11 Score=116.43 Aligned_cols=173 Identities=14% Similarity=0.034 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
.|.+....++..+.++++..+++.|+.+ +|++..+++...+.+.++..++.++.|+++||+ |||+.+.++..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 4555555566677888888899999975 899999999999999999999999999999997 99999888877776666
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+++.... . +...++ .++.|++.++..+.......+.+++++ .+++.
T Consensus 285 ~~~~~~~-------~--------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~ 330 (393)
T PRK09705 285 CGFIWLP-------L--------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKL 330 (393)
T ss_pred HHHHHcc-------c--------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHH
Confidence 5443221 0 111122 234577777777777667778776432 27889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhh
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~~ 279 (356)
+++.+...++++.++|.+.+++.+..| |...|.+.+++.++.+++....
T Consensus 331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK09705 331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF 380 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887 7788887776666555554443
No 104
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.42 E-value=1.7e-11 Score=120.83 Aligned_cols=178 Identities=15% Similarity=0.097 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG--RYWTIAIFTTIYL 147 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G--Rr~~i~~~~~l~~ 147 (356)
.+|.+....++..+.++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+.+ |++......+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~ 323 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGIL 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHH
Confidence 45666666666666777788889999988899999999999999999999999999999999732 2333222222222
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
+..+.+..... .+....++..++.|++..+.........+|.++++. +
T Consensus 324 ~~~~~~~~~~~--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 371 (434)
T PRK11663 324 LSVGSLWLMPF--------------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------A 371 (434)
T ss_pred HHHHHHHHccc--------------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------H
Confidence 22211111100 012223333344444433333334456788888766 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (356)
+...++.+...++|..++|.+.+++.+..||...|.+.+++.+++.+..+..
T Consensus 372 g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 423 (434)
T PRK11663 372 GAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPF 423 (434)
T ss_pred HhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988877766665544443
No 105
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.42 E-value=1.2e-11 Score=119.21 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=125.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
++|+.....+....+.....+++..+++.|+.+++|++..+.+.+.....++..++.++.|+++||+ |||+.+.++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~ 313 (405)
T TIGR00891 235 KRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLA 313 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHH
Confidence 3444444444444455555556777889999999999999999999999999999999999999998 999998887765
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
..+..+.+.... .+...+.++.++.+++.++..+..++++.|.+|++.
T Consensus 314 ~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 361 (405)
T TIGR00891 314 GQLLIIPVFAIG---------------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ----- 361 (405)
T ss_pred HHHHHHHHHHhC---------------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch-----
Confidence 533222222110 134455555566666666777788899999999877
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHH
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 264 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i 264 (356)
+++.+++.+...++|..++|.+.+++.+..| |...+..
T Consensus 362 -~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 362 -RAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred -hHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 8999999999999999999999999999988 7766554
No 106
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.41 E-value=2.1e-11 Score=118.26 Aligned_cols=164 Identities=12% Similarity=0.042 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 018406 80 AERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (356)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~ 156 (356)
+..+....+...++.|+.+..+.... ..+.+..+..++..++.++.|+++||+ |||+++.++.++..++.+++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T PRK09874 230 IIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSFV 308 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHh
Confidence 33344444556667777665443222 234455566677778888999999998 99999998887776666554432
Q ss_pred hhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH
Q 018406 157 ATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (356)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~ 236 (356)
. +.+.+++.+++.|++.+...+...++..+..+++. +++.+++++.
T Consensus 309 ~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 354 (408)
T PRK09874 309 Q----------------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQS 354 (408)
T ss_pred c----------------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHH
Confidence 1 35566777888899999888888888888887766 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 237 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 237 ~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
...+|..++|.+++++.+..||++.|++.+++.+++.+....
T Consensus 355 ~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 355 FRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888877766655444
No 107
>PRK15075 citrate-proton symporter; Provisional
Probab=99.41 E-value=3.4e-11 Score=118.57 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~ 147 (356)
|+..+..+...++....++++..+++.|+++.+|++..+++.....+.++..++.+++|+++||+ |||++++++.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~ 315 (434)
T PRK15075 237 WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAI 315 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 44333334444556667778888899999988999999888888888888999999999999998 99998877655433
Q ss_pred HHHHH-HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 148 AGLTG-ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 148 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
+..++ ...... . .....+.+..++.+++.+...+....+..|.+|++.
T Consensus 316 ~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------ 364 (434)
T PRK15075 316 LTAYPALSWLVA-----A--------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------ 364 (434)
T ss_pred HHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------
Confidence 22211 111110 0 012233334445556666666666788899999887
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHHHHHHHhhcchh
Q 018406 227 LDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWG 259 (356)
Q Consensus 227 r~~~~~~~~-~~~~iG~~i~p~i~~~i~~~~gw~ 259 (356)
|+..+++.+ ++..+++.++|.+.+++.+..|+.
T Consensus 365 rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 365 RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 788888754 444556788999999999988853
No 108
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.41 E-value=8.2e-12 Score=122.27 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 018406 83 MAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (356)
Q Consensus 83 ~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~ 159 (356)
+.+......++.|+.+.+ +.+....+.+.++..++..++.+++|+++||+ |||+.+.++.++..++.+++.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~-- 313 (420)
T PRK09528 237 CFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT-- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc--
Confidence 333334445677766543 55666778888888888899999999999998 999999988888888777665532
Q ss_pred cccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHH-HHHHH
Q 018406 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSV 238 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~-~~~~~ 238 (356)
+.+.+++.+++.+++.+........++.|.+|++. ++...+. ++...
T Consensus 314 --------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~ 361 (420)
T PRK09528 314 --------------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAK 361 (420)
T ss_pred --------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHH
Confidence 35667777888888887777777888999998766 6666544 67778
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 239 TVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 239 ~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
.+|..+++.+.|++.+..||+..|.+.+++.++..++.+
T Consensus 362 ~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 362 QLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999987777655544433
No 109
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.40 E-value=5.4e-11 Score=114.97 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccC
Q 018406 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (356)
Q Consensus 84 ~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~ 163 (356)
.+.....+++.|+++ .|.+....+...+...++..++.++.|+++||+ |||+++.++.++..++.+... .
T Consensus 215 ~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~------- 284 (381)
T PRK03633 215 VLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S------- 284 (381)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-------
Confidence 333445667888764 699999999999999999999999999999998 999999888777776654332 1
Q ss_pred CCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 018406 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~ 243 (356)
...++..+++.+++.++..+...+...|..|+++ ++...+.++...++|..
T Consensus 285 -----------------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~ 335 (381)
T PRK03633 285 -----------------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSL 335 (381)
T ss_pred -----------------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHH
Confidence 1123345566677666677888888888887654 66677777788899999
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 244 VAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 244 i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~ 274 (356)
++|.+.|++.++.||++.|.+.+++.++..+
T Consensus 336 igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 336 LGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777654443
No 110
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.40 E-value=3.6e-11 Score=116.36 Aligned_cols=162 Identities=7% Similarity=-0.070 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH-HHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT-IYLAGL 150 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~-l~~~g~ 150 (356)
+.+.+..++..+++-....+++.|+ +++|++..+.+.+.+.+.++..+++++.|+++||+ ||+........ ...+..
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence 3344445555555544556677777 57899999999999999999999999999999998 98543321111 111111
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+.+.... .+.+.+++.+++.+.+.+...+...++..+ +. + +++..
T Consensus 85 ~~~~~~~---------------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~-~------~~~~~ 129 (382)
T TIGR00902 85 AAFSAGA---------------------------HNAWLLFIAIGLFALFFSAGMPIGDALANT-WQ-K------QFGLD 129 (382)
T ss_pred HHHHHhh---------------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHH-HH-H------HcCCC
Confidence 1111111 147788888988888887777776666543 22 2 36777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~ 270 (356)
++......++|..++|.+++++.+..||++.|++..++.+
T Consensus 130 ~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~ 169 (382)
T TIGR00902 130 YGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA 169 (382)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 8888888999999999999999999999999887655533
No 111
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.39 E-value=2.8e-11 Score=118.78 Aligned_cols=175 Identities=11% Similarity=0.058 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS--------FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s--------~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~ 143 (356)
+..++..++..........+++.|+.+ .|.+ ....+.+.++..+...++.++.|+++||+ |||+++.++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~ 288 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL 288 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 334444444444444445666777753 4544 35668888888889999999999999998 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (356)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~ 223 (356)
++..++..++..... . ......+++..++.|++.+...+....+++|.+|++.
T Consensus 289 ~~~~v~~~l~~~~~~------~------------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~--- 341 (418)
T TIGR00889 289 VAWALRFGFFAYGDP------E------------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI--- 341 (418)
T ss_pred HHHHHHHHHHHHcCc------c------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH---
Confidence 988877655554210 0 0124556777888999988888888899999999777
Q ss_pred hhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHh
Q 018406 224 KTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 224 ~~~r~~~~~~~~-~~~~iG~~i~p~i~~~i~~~------~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
|++.+++++ ....+|..++|.+.|++.+. .||++.|.+.+++.++..+++.+
T Consensus 342 ---~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 342 ---RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred ---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 899999997 56789999999999999887 45898988877775555544433
No 112
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.39 E-value=4.6e-12 Score=103.09 Aligned_cols=130 Identities=20% Similarity=0.243 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHH
Q 018406 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (356)
Q Consensus 113 ~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (356)
.+.++..++.++.|+++||+ |||+.+.++..+..++.+.+.... +...+++
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 56 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS----------------------------NITVLII 56 (141)
T ss_pred eehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc----------------------------cHHHHHH
Confidence 45667788899999999998 999999999888887776665431 3666777
Q ss_pred HHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (356)
Q Consensus 193 ~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~ 272 (356)
.+++.|++.+...+....+..|.+|+++ |+...++++....+|..+++.+.+++.+..+|++.|++..++.++.
T Consensus 57 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 57 ARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 8899999999888999999999999877 8999999999999999999999999998889999988877665555
Q ss_pred HHHHH
Q 018406 273 NMLFF 277 (356)
Q Consensus 273 ~~~~~ 277 (356)
.+...
T Consensus 131 ~~~~~ 135 (141)
T TIGR00880 131 FILLA 135 (141)
T ss_pred HHHHh
Confidence 44443
No 113
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.39 E-value=6.9e-11 Score=112.03 Aligned_cols=135 Identities=17% Similarity=0.119 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (356)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (356)
....+...+++.|+.+..+++++..++.+++.++++..|++.+|+ |+|+.++++..++++|..+..-++.
T Consensus 31 l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~--------- 100 (422)
T COG0738 31 LNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS--------- 100 (422)
T ss_pred cchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh---------
Confidence 445678889999999999999999999999999999999999998 9999999999999999988875542
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (356)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~ 247 (356)
...+..++++++++|.|.+.......+++..+.+++. -..-.+..+....+|+.++|+
T Consensus 101 ----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~ 158 (422)
T COG0738 101 ----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPL 158 (422)
T ss_pred ----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHH
Confidence 1357889999999999999999999999999999865 344556666677889999999
Q ss_pred HHHHHHh
Q 018406 248 LVVYIQM 254 (356)
Q Consensus 248 i~~~i~~ 254 (356)
+++++..
T Consensus 159 ~g~~lil 165 (422)
T COG0738 159 LGSSLIL 165 (422)
T ss_pred HHHHHHH
Confidence 9987765
No 114
>PRK03545 putative arabinose transporter; Provisional
Probab=99.38 E-value=1e-10 Score=113.36 Aligned_cols=171 Identities=15% Similarity=-0.024 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+......++.....++...+++.|+.+.+|++..+++.+...+.++..++.++.|+++||+ |||..+ ++..+..++..
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~ 285 (390)
T PRK03545 208 VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLL 285 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHH
Confidence 3334444455555556667778888888999999999999999999999999999999997 987654 44444443333
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
.+.... .+...+++..++.|++.+...+.....+.+..| +. +++++
T Consensus 286 ~l~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~ 331 (390)
T PRK03545 286 LLLPAA---------------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAM 331 (390)
T ss_pred HHHHHh---------------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHH
Confidence 332211 135566667777888877666666777777665 34 68888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 232 ~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
++++....+|..+||.+.|++.++.|++..|++.+++.++++++...
T Consensus 332 g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (390)
T PRK03545 332 ALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL 378 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999998888777766665544
No 115
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.38 E-value=3e-11 Score=119.57 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=130.8
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCC
Q 018406 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (356)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (356)
+++++..+.+.+.+.+..++.++.+.+|+++||| |-|+++.++.++..++.++.-++..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 5788999999999999999999999999999998 9999999999999999888877753
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cc
Q 018406 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HG 257 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~-~g 257 (356)
.....+++.|+++|++.|...++...+.+.++|+.+ |+++.++.+.+..+|.+++-.+.|++.+. .|
T Consensus 126 ------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~G 193 (466)
T KOG2532|consen 126 ------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLG 193 (466)
T ss_pred ------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC
Confidence 134467899999999999999999999999999887 99999999999999999999899999988 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 018406 258 WGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 258 w~~~f~i~~~~~~i~~~~~~~ 278 (356)
|++.|++.+++.++..++++.
T Consensus 194 W~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 194 WPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred CchHHHHHHHHHHHHHHHHHH
Confidence 999999988887665555443
No 116
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.38 E-value=4.7e-11 Score=116.72 Aligned_cols=159 Identities=12% Similarity=-0.003 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 018406 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (356)
Q Consensus 85 ~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~ 164 (356)
.+++..+++.|+++.+|++....+.+.+.+.++..++.++.++++|+. ++++.+.++.++..++.+++.+..
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence 345666788898888999999999999999999999999999999986 888888888777776665554321
Q ss_pred CCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 018406 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (356)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i 244 (356)
+....+++.++.|++.+...+...+++.|.+|++. |++.+++++...++|..+
T Consensus 311 ---------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~ 363 (417)
T PRK10489 311 ---------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAI 363 (417)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhH
Confidence 34556667777888877777777888899999776 899999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 245 ~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
++.+.+++.+..|+...+.+.+++.++..++...
T Consensus 364 g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 364 GAALLGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887877766655444444333
No 117
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.37 E-value=1.2e-10 Score=113.60 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLA 148 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~-~~~~l~~~ 148 (356)
.++...+..++....++++..+++.|++ ++|++..+.+.+.....++..++.++.|+++||+ |||+.+. .+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~ 300 (402)
T TIGR00897 223 NVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGI 300 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHH
Confidence 3456666677777888888888998875 5899999999988889999999999999999998 9888764 23332333
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+.+.+..... ... .+...+++..++.|++.++..+ ......|..| ++ ++
T Consensus 301 ~~~~l~~~~~---~~~--------------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g 349 (402)
T TIGR00897 301 FTLALYYIPQ---HFG--------------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KG 349 (402)
T ss_pred HHHHHHHHHH---ccC--------------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hH
Confidence 2222222110 000 1344555666777777776544 4455666544 34 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
..+++++....+|..++|.+.+++.+..||...|++.+++.+++.++..+
T Consensus 350 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 350 AAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998998888776665555443
No 118
>PRK12382 putative transporter; Provisional
Probab=99.37 E-value=4.9e-11 Score=115.53 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 018406 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (356)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~ 159 (356)
+..+.+..+..+.+.|+.+ .+++. .+.....+.++..++.++.|++.||+ |||+.+.++..+..++.+++.+..
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~-- 300 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP-- 300 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc--
Confidence 3344455555666777754 56543 45556667777788999999999997 999999988888877776554421
Q ss_pred cccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHH
Q 018406 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~ 239 (356)
+...++++.++.|++.+...+...+...|.+++++ |++.+++++....
T Consensus 301 --------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~ 348 (392)
T PRK12382 301 --------------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQD 348 (392)
T ss_pred --------------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 34556667788888888877888888889988766 8999999999999
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 240 iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
+|..++|.+.+++.+..||++.|.+.+++.+++.++.+
T Consensus 349 ~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 349 IAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988877766665544
No 119
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.37 E-value=2e-11 Score=119.70 Aligned_cols=174 Identities=15% Similarity=0.131 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhH-HHHHHHHHHHHHHHHHH
Q 018406 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYW-TIAIFTTIYLAGLTGIT 154 (356)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~-~i~~~~~l~~~g~~~~~ 154 (356)
+...+....+..+++.|+++++|++...++.+.++..+...+..++.|+++||. +|||| .++++.+++.++.+++.
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~ 88 (437)
T TIGR00792 9 FGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF 88 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH
Confidence 344555556667788999999999999999999999999999999999999984 48855 56677777777766665
Q ss_pred HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 018406 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (356)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~ 234 (356)
... .... ......+++.+++.+++.+....+..++.+|..++.+ +|++..++.
T Consensus 89 ~~~---~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~ 141 (437)
T TIGR00792 89 TTP---DFSA-------------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFR 141 (437)
T ss_pred hCC---CCCc-------------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHH
Confidence 431 1000 1234556666777788888877788888889876433 378888888
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------hcchhHHHHHHHHHHHHHHHHHHhh
Q 018406 235 YLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 235 ~~~~~iG~~i~p~i~~~i~~-------~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (356)
+...++|+.++..+.+.+.. ..+|++.+.+.+++.++..++....
T Consensus 142 ~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 193 (437)
T TIGR00792 142 RFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG 193 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888777766655542 3579888887777665554444333
No 120
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.36 E-value=1.8e-10 Score=111.54 Aligned_cols=169 Identities=9% Similarity=-0.063 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+.++..++..++...+.+.+.++.+.|++ ++|.+....+.......++..+..++.+++.||+ |.|+.+.++.++..+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-AAGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 44566666667767777778888899996 4899999999999989999999999999999998 999999999999988
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
..+.+.... +.+.+++..++.|+..+...+....++.+. |+++ ++
T Consensus 283 ~~~~~~~~~----------------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~ 327 (382)
T TIGR00902 283 RWAIIGAIE----------------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IA 327 (382)
T ss_pred HHHHHHhHh----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HH
Confidence 887776542 467778888999999999999999999987 7655 78
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 229 RFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 229 ~~~~~~~-~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
...+.++ .+..+|..+++.++|++.+..|+ ..|.+.+++.++++++
T Consensus 328 ~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 328 KLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 8888876 46678999999999999999886 5677766666555444
No 121
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.36 E-value=1.2e-10 Score=115.38 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcchhHHHHHH-HHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADA----YLGRYWTIAIF-TTI 145 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~----~~GRr~~i~~~-~~l 145 (356)
++.+....+...+++-....+++.|+ +++|.+....+.+..+..+...+..++.|++||| + |||+.++++ .+.
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~ 83 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHH
Confidence 45555555566666655555666665 6799999999999999999999999999999995 7 999998875 444
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
.+++++++..+.....+... .............++++..+..++.....++..++++|++|++++
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~-----------~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~---- 148 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGD-----------NLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR---- 148 (477)
T ss_pred HHHHHHHHHhCchhhhhccc-----------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----
Confidence 55555555443211000000 000000011223445555666778888888999999999998761
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH--Hhhc-------------chhHHHHHHHHHHHHHHHHHHhhcccc
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYI--QMEH-------------GWGSAFGALAIAMGISNMLFFIGTPLY 283 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i--~~~~-------------gw~~~f~i~~~~~~i~~~~~~~~~~~~ 283 (356)
+++.+.+++.+..++|+.+++.++++. .... +.++.|.+.++++++..++.++..+++
T Consensus 149 ~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 149 RTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 246788889999999999999888765 2211 467888888887777666655554443
No 122
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.36 E-value=1.9e-10 Score=113.27 Aligned_cols=173 Identities=11% Similarity=0.051 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (356)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~ 152 (356)
..++..++....+|++..+++.|+.+.+|++..+++...++..++..++.++.|+++||+ |||++++++.++..+..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~ 325 (432)
T PRK10406 247 MVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVP 325 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHH
Confidence 333334445677888999999999999999998888888887778888888999999998 9999887766654333322
Q ss_pred HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHH
Q 018406 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFN 232 (356)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~ 232 (356)
...... .. .+....+....+..++.+...+....+.+|.||++. |++.++
T Consensus 326 ~~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g 375 (432)
T PRK10406 326 ILSALQ-----NV-------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVG 375 (432)
T ss_pred HHHHHH-----cC-------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhh
Confidence 221110 00 011111111222223333344556788899999988 899999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Q 018406 233 FFYLSVT-VGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 233 ~~~~~~~-iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~ 277 (356)
+.+...+ +++..+|.+.+++. ..| |...+.+.+++.+++++..+
T Consensus 376 ~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 376 LSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHH
Confidence 8775444 44556787777664 455 55555555555554444433
No 123
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.36 E-value=3.8e-11 Score=118.22 Aligned_cols=159 Identities=16% Similarity=0.116 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhH
Q 018406 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (356)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (356)
+.+++++.++.++|++++|+++|++ |||..++++.++.+++.+++.++... ...
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-------------------------~~~ 116 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-------------------------PSF 116 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-------------------------hhH
Confidence 6788899999999999999999998 99999999999999888888776431 257
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHH-hhcchhHHHHHH
Q 018406 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV-VYIQ-MEHGWGSAFGAL 265 (356)
Q Consensus 188 ~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~-~~i~-~~~gw~~~f~i~ 265 (356)
.+++++|++.|+..|......+-|+.|..|.+- ||......+++.++|..++..++ ..+. +...|++.+...
T Consensus 117 e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~ 190 (485)
T KOG0569|consen 117 EMLILGRLIVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP 190 (485)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH
Confidence 889999999999999999999999999999988 89999899999999999986555 3444 334588888777
Q ss_pred HHHHHHHHHHHHh--hcccccccCCCCChhHHHHHHH
Q 018406 266 AIAMGISNMLFFI--GTPLYRHRLPGGSPLTRVAQVL 300 (356)
Q Consensus 266 ~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~vl 300 (356)
.+..++.++++.+ ..|+|.-. +++...++.+.+
T Consensus 191 ~i~~~~~l~~l~~~PESPk~Ll~--~k~~~~~A~~sl 225 (485)
T KOG0569|consen 191 LIPALLQLALLPFLPESPKYLLI--KKGDEEEARKAL 225 (485)
T ss_pred HHHHHHHHHHHhcCCCCcchHHH--HcCCHHHHHHHH
Confidence 7765555444333 33444322 134444555544
No 124
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.35 E-value=2.2e-10 Score=114.00 Aligned_cols=185 Identities=13% Similarity=0.042 Sum_probs=147.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh--HHHHHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY--WTIAIFTT 144 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr--~~i~~~~~ 144 (356)
+.|.+..-++..++-+-+...+......|.++++|++..+...+..+..+.+.++.+++|++.||+ |-| ++++++.+
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 345666667777777777778888899999999999999999999999999999999999999998 988 88887776
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
++.+..+.-.+-........ .+.+.+++.-++.|+..|+.++..-++.+++.|+.+
T Consensus 358 ~~~~i~~~g~~G~~~~~~g~--------------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~---- 413 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFGL--------------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR---- 413 (477)
T ss_pred HHHHHHHHHHHHhhhcccCc--------------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch----
Confidence 66432222222000000000 145667777789999999999999999999999877
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHh
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (356)
.+.+|++|.+..-..+.+||++.+.+.+..| .|+++....++.+++++++..
T Consensus 414 --e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 414 --EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF 466 (477)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999887 888888877777777766544
No 125
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.35 E-value=5.5e-11 Score=117.95 Aligned_cols=175 Identities=7% Similarity=-0.004 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY-LGRYWTIAIFTTIYL 147 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~-~GRr~~i~~~~~l~~ 147 (356)
+.++..++..++..+.++....+++.|++ ++|++..+++.+.++..++..++.+++|+++||. +++++..+++..+.+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 34566666666777777777788889986 4799999999999999999999999999999984 244444443332322
Q ss_pred --HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 148 --AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 148 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
++.+++... .+.+.+++.+++.|++.++..++..+++.|.+|++.
T Consensus 320 ~~l~~ll~~~~----------------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~----- 366 (455)
T TIGR00892 320 NGLTHLLCALA----------------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR----- 366 (455)
T ss_pred HHHHHHHHHHh----------------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH-----
Confidence 222222221 135667777888999999888999999999998766
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHh
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~-gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
+++.+++++...++|..++|.+++++.+.. +|++.|++.+++.+++.+..++
T Consensus 367 -~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~~~ 419 (455)
T TIGR00892 367 -FSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFLAI 419 (455)
T ss_pred -HhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHHHH
Confidence 899999999999999999999999998887 4999999888776665554433
No 126
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.34 E-value=4.1e-11 Score=108.42 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=131.7
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (356)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~ 141 (356)
.-+......+|.+.+..++-..+.+-+.+--+.++++.+|+|+..++++.+...+.+.+.+++.|.++|++ ||+.....
T Consensus 257 tdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~ 335 (459)
T KOG4686|consen 257 TDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVA 335 (459)
T ss_pred ccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHH
Confidence 33344455679999988888888888888889999999999999999999999999999999999999998 99865554
Q ss_pred H-HHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406 142 F-TTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (356)
Q Consensus 142 ~-~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~ 220 (356)
+ ++..+++-.+++++ ...-+++..++|+..+.......+.++-..|+++
T Consensus 336 ~a~~~tl~~H~~l~Ft------------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~q 385 (459)
T KOG4686|consen 336 SACILTLLGHSGLFFT------------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ 385 (459)
T ss_pred HHHHHHHHHhhhHHhh------------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH
Confidence 4 45566666666654 2335677778888877777778888999999888
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018406 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (356)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g 257 (356)
.|++++..+...|+|-++.|++++.+.+.-|
T Consensus 386 ------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 386 ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred ------hcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 9999999999999999999999999998765
No 127
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.33 E-value=1e-10 Score=113.09 Aligned_cols=155 Identities=9% Similarity=-0.018 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHHHHHHHH
Q 018406 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY----WTIAIFTTIYLAGLTGIT 154 (356)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr----~~i~~~~~l~~~g~~~~~ 154 (356)
++-.++...+...++.|+ +++|.+..+.+.+++++.+...++.+++|+++||+ ||+ +.+.+...+.. +...
T Consensus 14 ~~~~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~---~~~~ 88 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA---VAFW 88 (382)
T ss_pred HHHHHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH---HHHH
Confidence 333344444556677888 46899999999999999999999999999999998 984 22222222111 1111
Q ss_pred HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH
Q 018406 155 LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF 234 (356)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~ 234 (356)
... .+.+.+++.+++.+++.+...+...++..+..+ + ++..++..
T Consensus 89 ~~~---------------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~--~------~~~a~~~~ 133 (382)
T PRK11128 89 FGA---------------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQK--Q------IGLDYGKV 133 (382)
T ss_pred Hhc---------------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHh--h------ccCCcchH
Confidence 111 147778888998999888888877777666522 1 45556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 235 YLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (356)
Q Consensus 235 ~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~ 273 (356)
....++|..++|.+++++.+++||+..|++.++..++..
T Consensus 134 ~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~ 172 (382)
T PRK11128 134 RLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML 172 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 667789999999999999999999999987665544433
No 128
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.33 E-value=3.1e-10 Score=113.70 Aligned_cols=175 Identities=10% Similarity=0.067 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 75 FGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVN-NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (356)
Q Consensus 75 ~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~-~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~ 153 (356)
.+..++..+..+....+.+.|+.+++|++..+.+.+.. ...++..++.+++|+++||+ |||+.+.++.++..++.+..
T Consensus 228 ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~ 306 (491)
T PRK11010 228 LLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGY 306 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555667788888889999999999874 55689999999999999998 99988777666555444333
Q ss_pred HHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHH
Q 018406 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (356)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~ 233 (356)
...... .+ +...+++..++..++.|...+...++..+..+.+. .++.+++
T Consensus 307 ~~l~~~----~~--------------------~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl 356 (491)
T PRK11010 307 WLLSIT----DK--------------------NLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFAL 356 (491)
T ss_pred HHHHhc----cc--------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHH
Confidence 221100 00 23334444455444445445666777788888776 6777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhc
Q 018406 234 FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (356)
Q Consensus 234 ~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (356)
++...++|..+++.+.|++.+..||+..|.+.+++.+++++.....+
T Consensus 357 ~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 357 LSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999988888999999999999999888887777666655443
No 129
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.33 E-value=1.9e-10 Score=110.05 Aligned_cols=129 Identities=21% Similarity=0.262 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHH
Q 018406 118 SQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYIT 197 (356)
Q Consensus 118 ~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (356)
..++.++.|+++||+ |||+++.++.++..++.+++.++.+.... .......++++|++.
T Consensus 48 ~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~r~l~ 106 (394)
T TIGR00883 48 RPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI--------------------GIWAPILLLLARLIQ 106 (394)
T ss_pred hhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh--------------------HHHHHHHHHHHHHHH
Confidence 346889999999998 99999999999999888877765310000 001124578889999
Q ss_pred HHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hhcchhHHHHHHHHHH
Q 018406 198 GFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGSAFGALAIAM 269 (356)
Q Consensus 198 gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~--------~~~gw~~~f~i~~~~~ 269 (356)
|++.+...+....+++|.+++++ |+...++.+.+..+|..+++.+...+. +..+|++.|.+.+++.
T Consensus 107 G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 180 (394)
T TIGR00883 107 GFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLV 180 (394)
T ss_pred HhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHH
Confidence 99999999999999999999877 889999999999999999988776553 3468999988766655
Q ss_pred HHHH
Q 018406 270 GISN 273 (356)
Q Consensus 270 ~i~~ 273 (356)
++..
T Consensus 181 ~~~~ 184 (394)
T TIGR00883 181 LIGL 184 (394)
T ss_pred HHHH
Confidence 4443
No 130
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.33 E-value=2e-10 Score=108.32 Aligned_cols=165 Identities=10% Similarity=0.011 Sum_probs=125.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+++..++..+..++...+-.++..+++.|+.+. +|++..+++...+.+.++..++.+++++++||+ |+++++.++.+
T Consensus 138 ~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~ 216 (310)
T TIGR01272 138 QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAF 216 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence 344566666666666556667888999999754 799999999999999999999999999999998 99999888887
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+.+++.++..... ... ...+.++.|++.+...|...+...+.++++.
T Consensus 217 l~~~~~~l~~~~~----------------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~---- 263 (310)
T TIGR01272 217 LAVLLSIGAALTH----------------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT---- 263 (310)
T ss_pred HHHHHHHHHHHcC----------------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----
Confidence 7776664443321 111 2235567899999999999998888888653
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~ 269 (356)
..++ ++. ....+|+++.|.+.|++.|..|.+.+|+++.++.
T Consensus 264 -~~as--ai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 264 -SQGS--GIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred -hhhH--HHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 1333 333 4567899999999999999999888887655543
No 131
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.33 E-value=1e-10 Score=114.70 Aligned_cols=163 Identities=14% Similarity=0.035 Sum_probs=113.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccc
Q 018406 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDR 171 (356)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 171 (356)
...++.+++|++..+++.......++..++.+++|+++||+ |||+.+.++.++..++.+++.+...... +.
T Consensus 306 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------ 376 (481)
T TIGR00879 306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV--TG------ 376 (481)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc--CC------
Confidence 34455567899998888888888999999999999999998 9999999888777777666653211000 00
Q ss_pred cccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 018406 172 ISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~ 251 (356)
.........+....++.+....+..+....+.+|.+|++. |+...++.+...++|++++|.+.++
T Consensus 377 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~ 441 (481)
T TIGR00879 377 ---------SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPT 441 (481)
T ss_pred ---------cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000012222222222222222334566677799999776 8999999999999999999999999
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 252 IQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 252 i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
+.++.+|++.|++.+++.+++.++.++
T Consensus 442 ~~~~~~~~~~f~~~~~~~~~~~i~~~~ 468 (481)
T TIGR00879 442 MLESIGVGGVFIFFGGLNVLGLIFVYF 468 (481)
T ss_pred HHHhcCccceehhHHHHHHHHHHHHhe
Confidence 999899999998877776655554433
No 132
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.30 E-value=1.2e-10 Score=114.90 Aligned_cols=178 Identities=15% Similarity=0.093 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.+|.+.+..++.....+++..+++.|+++..|++..++++....+.++..++.+++|+++||+ |+++....+..+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~ 330 (438)
T TIGR00712 252 LLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLV 330 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHH
Confidence 455666666666677788888999999998999999999999999999999999999999997 7543222333222211
Q ss_pred HHHHH-HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 150 LTGIT-LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 150 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
.+... +... +. .+....++..++.|++..+..........|.+|++. ++
T Consensus 331 ~~~~~~~~~~-----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g 380 (438)
T TIGR00712 331 TIAVIVYWMN-----PA-------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AG 380 (438)
T ss_pred HHHHHHHHhc-----CC-------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------ee
Confidence 11111 1100 00 012223333444454433332333345678899776 89
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 229 RFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 229 ~~~~~~~~~~~iG~-~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
...++++...++|+ +++|.+.+++.+..||.++|++.+++.+++++..++
T Consensus 381 ~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 381 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred eehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999988777775 689999999999999999988777765555555444
No 133
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.30 E-value=6.8e-10 Score=111.64 Aligned_cols=152 Identities=15% Similarity=0.066 Sum_probs=124.3
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCC
Q 018406 99 VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGS 178 (356)
Q Consensus 99 ~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (356)
++.-|+...+.+..+..+-..+..+++|.++||+ .||++++.+.++..+..+.+++.....
T Consensus 39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~~~~L~~l~~~~------------------ 99 (524)
T PF05977_consen 39 QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALVALLLAVLAFFG------------------ 99 (524)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHhC------------------
Confidence 4566888889999999999999999999999998 999999999888776655555433210
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 179 CEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
..+.+.+++..++.|++.+...+...+++.|+.|+++ ...+.++.....++.-.+||.++|.+....|-
T Consensus 100 -----~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~ 168 (524)
T PF05977_consen 100 -----LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGA 168 (524)
T ss_pred -----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 1246778888899999999999999999999999877 88899999999999999999999999998888
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 018406 259 GSAFGALAIAMGISNMLFFIGT 280 (356)
Q Consensus 259 ~~~f~i~~~~~~i~~~~~~~~~ 280 (356)
.+.|.+.++..++.++.+...+
T Consensus 169 ~~~f~inalsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 169 AAAFLINALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 8899888777665554444333
No 134
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.29 E-value=9.2e-11 Score=111.76 Aligned_cols=183 Identities=14% Similarity=-0.012 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~ 147 (356)
-+..|...+..+..--++.++..+++.|++++|+.++.+++.....+.+...+.-+++|+||||+ |.++++.+....++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 34578889999998888999999999999999999999999999999999999999999999998 99998888888888
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++...+..... ... . ..+...+++..+.+++..|.-.+.+..+++..|+.+ .
T Consensus 296 ~~~~~l~~~~~--~~~---------------~----~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~ 347 (417)
T COG2223 296 LAAALLSLFLT--GFG---------------H----GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------T 347 (417)
T ss_pred HHHHHHHcccc--ccc---------------c----CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------h
Confidence 77777665421 000 0 113444444445555555555666777777777753 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhh
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~~ 279 (356)
+...++......+|+..-|...+...+..| +...|++...+.+++.++.+..
T Consensus 348 G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 348 GAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred hHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888889999999999999999888 8888988877777666655444
No 135
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.26 E-value=9.7e-10 Score=105.45 Aligned_cols=181 Identities=15% Similarity=0.077 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~ 147 (356)
.+.++...+..++...+.|...+++-.|+++..|++....+++...|-++..++.+++|+++|| +.|+++....++..
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a 287 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA 287 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence 3457888888888888999999999999999999999999999999999999999999999998 78888888877777
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
+.++.+.+... +.....+..++.|+..+........-.++..| +. .
T Consensus 288 ~~~l~l~~~~~---------------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~------~ 333 (394)
T COG2814 288 LALLALTFTGA---------------------------SPALALALLFLWGFAFSPALQGLQTRLARLAP-DA------A 333 (394)
T ss_pred HHHHHHHHhcc---------------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-Cc------h
Confidence 66666655421 34455555555666655544445555555333 33 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccc
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 284 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~ 284 (356)
....+++....|+|..+|..++|.+.+++|+....++.+++.++++++.+...+.++
T Consensus 334 ~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~ 390 (394)
T COG2814 334 DLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDR 390 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 778888888899999999999999999999999999888888877777666555443
No 136
>PRK10504 putative transporter; Provisional
Probab=99.26 E-value=6.2e-10 Score=110.52 Aligned_cols=156 Identities=10% Similarity=-0.026 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
++..++..++..+.+.......+.|++..+|.+...++.......++..++.++.|+++||+ |||+++.++.++..++.
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALVS 341 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 44455555566666555555677788878999999999888888888888889999999998 99999998888777766
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+++.+... . .....+.+..++.|++.+...+....+..+.+|++. ++..
T Consensus 342 ~~~~~~~~------~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 390 (471)
T PRK10504 342 LLFMLVAL------L-------------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSG 390 (471)
T ss_pred HHHHhccc------c-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccch
Confidence 55544210 0 123334455667788888888888888899998776 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
++++++...+|..+|+.+.+.+.+..|+
T Consensus 391 ~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 391 NSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999888776554
No 137
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.5e-10 Score=115.99 Aligned_cols=179 Identities=16% Similarity=0.135 Sum_probs=146.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVN---MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~ 141 (356)
.+.|- |.+.+..++..+..+++... +...++++++.+..+.+++.++......+..++.+.+.||+ |.|.++++
T Consensus 40 dGG~g--WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~ 116 (509)
T KOG2504|consen 40 DGGWG--WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIA 116 (509)
T ss_pred CCCee--eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHH
Confidence 45554 77777777777777775443 34567788999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHH-HHHHHhhhchhhhhhhhhhccCCCCC
Q 018406 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDERS 220 (356)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~gig~g~~~~~~~~~~ad~f~~~~ 220 (356)
|.++..+|.++..++. +.+.+++.. ++.|+|.|+...+....+...|..
T Consensus 117 G~~v~~~g~~lssF~~----------------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~k-- 166 (509)
T KOG2504|consen 117 GGLVAALGLLLSSFAT----------------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEK-- 166 (509)
T ss_pred HHHHHHHHHHHHHHHh----------------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHH--
Confidence 9999999999988874 477777776 778999999998888888877773
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (356)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (356)
||+.+.++-..+..+|..+-|.+..++.+.+|||+.+++.+.+.+-.++.....+|
T Consensus 167 -----kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 167 -----KRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred -----HHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48888888878888888888889999999999999999888877555555444444
No 138
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.25 E-value=6.6e-10 Score=110.27 Aligned_cols=179 Identities=16% Similarity=0.068 Sum_probs=120.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH------
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI------ 139 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i------ 139 (356)
-+++.+|...+..++....++.+..++|.|+.+.+|++..+++....+..++..++.+++|+++||+ ++|+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~ 336 (465)
T TIGR00894 258 PKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAAR 336 (465)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHH
Confidence 3456678888888899999999999999999999999999999999999999999999999999997 644211
Q ss_pred --HHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 018406 140 --AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (356)
Q Consensus 140 --~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~ 217 (356)
..+..+...+..++..... . .+....++...+.+.+.++..+.......|..|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~-----~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 391 (465)
T TIGR00894 337 KIFNGIGGLGPGIFAYALPYL-----S--------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP 391 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-----C--------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh
Confidence 1111111111111111100 0 012233333444444444444444444455554
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHHHH
Q 018406 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~---gw~~~f~i~~~~~~i~~~~~~ 277 (356)
. . ++...++.+...++|+.++|.+.+++.+.. +|..+|.+.+++.+++.++..
T Consensus 392 ~-~------~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 392 R-F------LGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred h-H------HHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 3 3 799999999999999999999999987653 378888887777666655443
No 139
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.25 E-value=2.2e-10 Score=112.15 Aligned_cols=165 Identities=8% Similarity=-0.078 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIY 146 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~-i~~~~~l~ 146 (356)
+.+|...+..++....++++.+++|.|+++ ..+++..+++.......++..++.+++|+++||+ |||+. +.+..++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence 346777777788888888999999999976 3477888889899999999999999999999997 87764 33333333
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
.++.++ .... . +....+++..+.++|.....+.......|.+|++.
T Consensus 321 ~~~~~~-~~~~------~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------ 366 (412)
T TIGR02332 321 AAGWLL-ASAT------D---------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------ 366 (412)
T ss_pred HHHHHH-HHhc------C---------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------
Confidence 333211 1111 0 11112222223334433333334444567777666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHH
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIA 268 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~ 268 (356)
|+..+++.+...++|++++|.+.+.+.+..| |+++|++.+++
T Consensus 367 ~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 367 RAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999999999999999875 99988876554
No 140
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.25 E-value=3.6e-10 Score=112.76 Aligned_cols=175 Identities=11% Similarity=0.037 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-----HHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-----TIAIFTTI 145 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~-----~i~~~~~l 145 (356)
.|.+.+..++.....+++..+++.|+.+++|++..+++...+++.++..++.+++|+++||+ |||+ ..+....+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 34444444445555566677789999888999999999999999999999999999999998 8762 22211111
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
.+.+...+.+.. . .+....++..++.+++.++..+...++..+..+ +.
T Consensus 333 ~l~~i~~~~~~~------~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~----- 380 (476)
T PLN00028 333 TLGGVFCIWLGR------A--------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS----- 380 (476)
T ss_pred HHHHHHHHHhcc------c--------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh-----
Confidence 111111111111 0 023344444555566555555555555566544 23
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhc
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGT 280 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~ 280 (356)
++...++.+...++|+.+++.+.+ ..+..+|..+|++.+++.+++.++.++.+
T Consensus 381 -~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 381 -LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred -chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 788888877777777777776543 22234699999988877777766655543
No 141
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.24 E-value=2.1e-10 Score=109.18 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH--HHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT--IYL 147 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~--l~~ 147 (356)
.++.+.+..++.....+++..+++.|+.+.+|++..+++.....+.++..++.+++|+++||+.+||+....... +..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~ 296 (379)
T TIGR00881 217 VLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALII 296 (379)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 456666666777777777888899999999999999999999999999999999999999986344433222211 111
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++....... +. .+...+++..++.|+...+.......+..|.+|++. |
T Consensus 297 ~~~~~~~~~-------~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 344 (379)
T TIGR00881 297 VSLLVYWLN-------PA-------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------A 344 (379)
T ss_pred HHHHHHhcC-------cc-------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------h
Confidence 111111110 00 123344445556666555556666778899999877 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 262 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f 262 (356)
+...++++....+|..++|.+.+++.+..||++.|
T Consensus 345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 345 GTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999999998754
No 142
>PRK09669 putative symporter YagG; Provisional
Probab=99.24 E-value=6.2e-10 Score=109.94 Aligned_cols=180 Identities=9% Similarity=0.032 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHH-HHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWT-IAIFT 143 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~-i~~~~ 143 (356)
++.-+.-.+..+..++.+..+..+++.|+++++|++...++.+..+..+.-.+..|+.|+++||. +|||+. ++++.
T Consensus 8 ~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~ 87 (444)
T PRK09669 8 TKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFA 87 (444)
T ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHH
Confidence 33334333444566666667778899999999999999999999999999999999999999993 388554 54566
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (356)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~ 223 (356)
+.+.+..+++... |.... ......+++..++.+++..+...+..++.+|+.++.+
T Consensus 88 ~~~~i~~~l~f~~---p~~~~-------------------~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~--- 142 (444)
T PRK09669 88 IPFGVVCLLTFYT---PDFGA-------------------TGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR--- 142 (444)
T ss_pred HHHHHHHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH---
Confidence 6665555444332 11110 1234555555666676667777788899999886533
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hcchhHHHHHHHHHHHHHHH
Q 018406 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 224 ~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~-------~~gw~~~f~i~~~~~~i~~~ 274 (356)
.|++..++.....++|+.+++.+...+.. ..||+..+.+.+++.++..+
T Consensus 143 --eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~ 198 (444)
T PRK09669 143 --ERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFF 198 (444)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 27778888887888888777765544332 23566666655555444433
No 143
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.23 E-value=1.6e-09 Score=104.83 Aligned_cols=170 Identities=11% Similarity=0.002 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+......++.....+...++++.|+.+.+|++..+.+...+...++..++.++.|+++||+ |+++.+.++..+..++.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~ 280 (382)
T PRK10091 202 WLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALL 280 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHH
Confidence 4444434444444445556677788888999999999999999999999999999999998 999999888877777665
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhcc-CCCCChhhhhhhhhH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ-FDERSKDYKTHLDRF 230 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~-f~~~~~~~~~~r~~~ 230 (356)
++..... +....++..++.++|.++..++......+. .+.+. ++..
T Consensus 281 ~~~~~~~---------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~ 327 (382)
T PRK10091 281 MLFFFGG---------------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA 327 (382)
T ss_pred HHHHHHh---------------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH
Confidence 5433211 223344444455555544444333333333 33222 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHHHH
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~-~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
..+....+|..+||.+.+++.+. .+|++.+.+.+++.++.+..+.
T Consensus 328 --~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 328 --GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 23556789999999999999885 5798888877666555444433
No 144
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.23 E-value=1.4e-09 Score=106.30 Aligned_cols=147 Identities=15% Similarity=0.034 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccC
Q 018406 84 AYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFM 163 (356)
Q Consensus 84 ~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~ 163 (356)
..+.+..+++.|+.+ .|++....+...+...++..++.+++|+++||+ |||+.+.++.++..++.+++.....
T Consensus 246 ~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~----- 318 (426)
T PRK12307 246 ANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ----- 318 (426)
T ss_pred HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 334466678888875 699988888888888899999999999999998 9999988887776655444332210
Q ss_pred CCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH
Q 018406 164 PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI 243 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~ 243 (356)
.....+.+..+..+++..+..+..+.++.|.+|++. +++.+++.+....+|+.
T Consensus 319 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~ 371 (426)
T PRK12307 319 ---------------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGT 371 (426)
T ss_pred ---------------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHH
Confidence 012222222222333333445567788899999876 89999998888899999
Q ss_pred HHHHHHHHHHhhcchhHHHHH
Q 018406 244 VAFTLVVYIQMEHGWGSAFGA 264 (356)
Q Consensus 244 i~p~i~~~i~~~~gw~~~f~i 264 (356)
++|.+.+++.+..|+....++
T Consensus 372 ~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 372 FNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHHHHHHcccHHHHHHH
Confidence 999999999998886554333
No 145
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=109.08 Aligned_cols=132 Identities=16% Similarity=0.076 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018406 87 GLSVNMVTFMFYVMHK----SFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (356)
Q Consensus 87 ~~~~~l~~yl~~~~~~----s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~ 162 (356)
.+..+++..++...+. +..-++.+-+.|.++..+.++++|-+||+| |||++++++++...+.+.+.+.+.
T Consensus 46 ~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~----- 119 (451)
T KOG2615|consen 46 PFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR----- 119 (451)
T ss_pred HHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444444444444433 334578888899999999999999999999 999999999999888777777653
Q ss_pred CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH
Q 018406 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA 242 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~ 242 (356)
+...++++|++.|+..|- .+...++++|.+++++ |+..++....+..+|-
T Consensus 120 -----------------------~F~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~------r~l~ms~v~~a~~lGf 169 (451)
T KOG2615|consen 120 -----------------------NFAAFVLARFLGGIFKGN-LSVIRAIISDVVSEKY------RPLGMSLVGTAFGLGF 169 (451)
T ss_pred -----------------------HHHHHHHHHHhhhhccCc-hHHHHHHHHhhcChhh------ccceeeeeehhhhcch
Confidence 567788889999998665 5678899999999877 8899999999999999
Q ss_pred HHHHHHHHHHHh
Q 018406 243 IVAFTLVVYIQM 254 (356)
Q Consensus 243 ~i~p~i~~~i~~ 254 (356)
.+||.+++|+..
T Consensus 170 ilGPmIGgyla~ 181 (451)
T KOG2615|consen 170 ILGPMIGGYLAQ 181 (451)
T ss_pred hhcchhhhHHHh
Confidence 999999999987
No 146
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.22 E-value=8e-10 Score=104.79 Aligned_cols=153 Identities=9% Similarity=0.017 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLS-VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
++..++..++....++++. ...+.|+++.+|.+..+.+.+.....++..++.++.++++||+ ||++.+.++.++..++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 290 (365)
T TIGR00900 212 LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGLA 290 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 4445555555555555555 5667777777999999999999999999999999999999998 9999988876666655
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+++.... . +.+.+++..++.|++.+...+...+++.|.+|++. |++
T Consensus 291 ~~~~~~~~--------------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~ 337 (365)
T TIGR00900 291 ILVVGLTP--------------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGR 337 (365)
T ss_pred HHHHHhhc--------------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHH
Confidence 55444321 0 25566777888999999888899999999999766 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~g 257 (356)
..++++...++|..++|.+.+++.+..|
T Consensus 338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 338 VFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999988654
No 147
>TIGR00895 2A0115 benzoate transport.
Probab=99.22 E-value=4.8e-10 Score=107.57 Aligned_cols=149 Identities=14% Similarity=0.033 Sum_probs=113.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~ 147 (356)
++..+...+..++....++.+..+++ |+.+++|++..+.+.......++..++.+++|+++||+ |||+.+....+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 326 (398)
T TIGR00895 249 ARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAV 326 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHH
Confidence 44455555555666667777777777 67778999999999999999999999999999999998 99955444333333
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
+.. ++.... .+...+++..++.|++.++..+...++.+|.+|++. |
T Consensus 327 ~~~-~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~ 372 (398)
T TIGR00895 327 FAV-LVGSTL---------------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------R 372 (398)
T ss_pred HHH-HHHHHh---------------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------H
Confidence 222 222211 034556667788899988888999999999999776 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYI 252 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i 252 (356)
+..+++++....+|..++|.+.|++
T Consensus 373 g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 373 ATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999998875
No 148
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.22 E-value=3.4e-09 Score=103.18 Aligned_cols=165 Identities=12% Similarity=-0.094 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
++...+..++.....+......+.|+.+.+|++..+.+.......++..++.++.|+++||+ |+|+.+.++.++..++.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~ 295 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGL 295 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 34444444444444555556678888888999998888887777778889999999999998 99999999888887777
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+++.+.... .+ .+...++++.++.|+|.+...+..........+ ++ +++.
T Consensus 296 ~~~~~~~~~---~~--------------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~g~~ 345 (406)
T PRK15402 296 LLAALATVI---SS--------------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-VS------KGTV 345 (406)
T ss_pred HHHHHHHHc---cc--------------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-cc------ccHH
Confidence 766654210 00 135556777788888888766665554433322 33 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~ 266 (356)
.+.+++...+|..+|+.+.+++.+..++....+...
T Consensus 346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~ 381 (406)
T PRK15402 346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNL 381 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHH
Confidence 999999999999999999999887777654444333
No 149
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.21 E-value=1.8e-09 Score=107.53 Aligned_cols=170 Identities=9% Similarity=-0.000 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----hhHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIAIFTTIY 146 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-----Rr~~i~~~~~l~ 146 (356)
..+....+...+. +.+...+..++.+++|++.++.+...++..+...+-++ +|+++|++ + ||+.++++.++.
T Consensus 29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~~~~~l~ 105 (468)
T TIGR00788 29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLVLSGLLG 105 (468)
T ss_pred HHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHHHHHHHH
Confidence 4444466777777 66667788888889999999999999999999888776 99999998 7 777777776555
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
. ...+..++. .++ ......+.+++.+++.+......-++..|..+ +++ ..
T Consensus 106 ~-~~~~~~l~~-----~~~--------------------~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~ 155 (468)
T TIGR00788 106 S-AILYGLLPG-----KVS--------------------SAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SA 155 (468)
T ss_pred H-HHHHHhccc-----ccc--------------------hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---Cc
Confidence 2 111122211 011 23333446788899999999999999999999 432 12
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~ 274 (356)
.+...++.+.+.++|..+++.+++++.+..+|+..|++.+++.++..+
T Consensus 156 ~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~ 203 (468)
T TIGR00788 156 GPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLF 203 (468)
T ss_pred CCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 455666777778899999999999999999999999988777665543
No 150
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.21 E-value=1.8e-09 Score=105.92 Aligned_cols=161 Identities=16% Similarity=0.049 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
|.++..++..++..+..+......+.|++..++ +....+.+.....++..++.+++++++||+ |||+++.++.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 345556666666666666554444445544455 455666777777888899999999999998 999999999888887
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChh-hhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL 227 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~-~~~~r 227 (356)
+.+.+.+.. .+...+++..++.+++.+...+...++++|..+.++-+ ..++.
T Consensus 300 ~~~~~~~~~---------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (437)
T TIGR00792 300 GYLIFFFAG---------------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAE 352 (437)
T ss_pred HHHHHHHcc---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccch
Confidence 776655421 13455666677888998888889999999988743211 12247
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
|.+++++++...+|..+++.+.+++.+..||
T Consensus 353 G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 353 GLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8899999999999999999999999887766
No 151
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.21 E-value=5.6e-10 Score=110.85 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.++...+..++..+.+++...+++.|+++.+|++..+++.......++..++.+++|++.||+ |||+.+.++.++..++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG 334 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence 345556666667777788888899999999999999999999999999999999999999998 9999999888888777
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
..++..... ++ .+...++...++.|+|.+...++......+.+|+++ ++.
T Consensus 335 ~~~~~~~~~-----~~-------------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~ 384 (485)
T TIGR00711 335 FYWRAFTFT-----PD-------------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IAR 384 (485)
T ss_pred HHHHhccCC-----CC-------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhH
Confidence 766553210 11 134555666788899988887777777778888666 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~ 256 (356)
..++++...++|+.+|+.+.+.+.++.
T Consensus 385 ~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 385 GSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887653
No 152
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.20 E-value=7e-10 Score=111.23 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
|.+....+..++..+.+++...+++.|+++.+|++..+++.....+.++..++.+++|++.||+ |||+.+.++.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 3445566666677777778878899999999999999999999999999999999999999998 999999888888877
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+.+++..... . .+....++..++.|+|.|...+.......+..|+++ ++
T Consensus 338 ~~~~l~~~~~-----~--------------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g 386 (495)
T PRK14995 338 SFYGLAMTDF-----S--------------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AA 386 (495)
T ss_pred HHHHHHHhcC-----C--------------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cc
Confidence 7766544210 0 123445566788899999888888888888888776 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQME 255 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~ 255 (356)
...+++++..++|+.+|+.+.+.+.++
T Consensus 387 ~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 387 AAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998887653
No 153
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.20 E-value=3.3e-09 Score=102.60 Aligned_cols=165 Identities=7% Similarity=-0.087 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.++..++..++...........++.|+. +.|++..+.+....+..++..+..++.|++.||+ |+++.+.++.++..++
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~ 283 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVR 283 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH
Confidence 4455555555555555566677788885 5899998889888888888888889999999998 9999999888887777
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+.+.... +.+.+++..++.|++.+...+....+..++ ++++ +++
T Consensus 284 ~~~~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~ 328 (382)
T PRK11128 284 WGLMGSTT----------------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIR 328 (382)
T ss_pred HHHHHhhh----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHH
Confidence 66554431 466677778888998888777777777775 3333 566
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 230 FFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (356)
Q Consensus 230 ~~~~~~-~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~ 272 (356)
..++++ +...+|..++|.++|++.+..|+. .|+..+++.+++
T Consensus 329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 329 LQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 777765 556778899999999999998873 555555444433
No 154
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.20 E-value=1.5e-09 Score=105.31 Aligned_cols=169 Identities=12% Similarity=0.089 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+..++..++....+......++.|+...+ +.+....+.+.++..+...++.++.|++.||+ |||+.+.++.+++.+
T Consensus 218 ~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l 296 (396)
T TIGR00882 218 WMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSV 296 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHH
Confidence 33344444444444445556777877665 44556667778888888888889999999998 999999998888777
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+.++..... +...+++..++.|++.+........+..+.++++. ++
T Consensus 297 ~~~~~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a 342 (396)
T TIGR00882 297 RIIGSSFAT----------------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SA 342 (396)
T ss_pred HHHHHHhcC----------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EE
Confidence 666544421 35556677778888876666666667777777665 55
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 229 RFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 229 ~~~~~-~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
...+. ++....+|+.+++.+.|++.+..||+..|.+.+++.++..++
T Consensus 343 t~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 343 TIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred EeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 55554 667889999999999999999999999998877776555443
No 155
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.19 E-value=3.5e-09 Score=105.16 Aligned_cols=152 Identities=9% Similarity=-0.046 Sum_probs=105.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccc
Q 018406 94 TFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (356)
Q Consensus 94 ~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (356)
.++.+++|++............+...++.+++|+++||+ |||+.++++.++..++.+++..... .+
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~-----~~-------- 360 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFY-----TQ-------- 360 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHh-----cC--------
Confidence 344467888877777777777788889999999999998 9999999999998888877664321 00
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhhhc-hhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Q 018406 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV-- 250 (356)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~-~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~-- 250 (356)
........+.++.+++.+. ..+....+.+|.+|++. |+..+++.+....+|..+++.+.+
T Consensus 361 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~ 423 (479)
T PRK10077 361 -----------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMM 423 (479)
T ss_pred -----------cccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0111222333444444433 33567889999999776 899999888888788777755544
Q ss_pred ----HHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 251 ----YIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 251 ----~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
++.+..+|++.|++.+++.+++.++.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (479)
T PRK10077 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFM 453 (479)
T ss_pred HhccchhhhccCccHHHHHHHHHHHHHHHH
Confidence 44567788888887666555554443
No 156
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.18 E-value=2.8e-09 Score=105.20 Aligned_cols=183 Identities=14% Similarity=-0.007 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
..|.+.+..++....|.++..+++.|+++.+ +.........+..+...+..+++|+|+||+ |++++++++.++.+++
T Consensus 253 ~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i~ 329 (462)
T PRK15034 253 HLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAIF 329 (462)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHHH
Confidence 3577888888887778778888999988766 333334444456778888899999999998 9999999998877776
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC----------
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER---------- 219 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~---------- 219 (356)
.+++.+.. |.- ...+...+.++.+++.++.|...+.+..+++..||++
T Consensus 330 ~~~~~l~l--p~~--------------------~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~ 387 (462)
T PRK15034 330 SALLFLTL--PGT--------------------GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGG 387 (462)
T ss_pred HHHHHHHh--ccc--------------------cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhccccccc
Confidence 65544332 100 0124566666666666666666777777777877741
Q ss_pred C-----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Q 018406 220 S-----KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 220 ~-----~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~ 277 (356)
. ...+++.+...++......+|+.+-|.+.++..+..| +..+|++..+..++++++.+
T Consensus 388 ~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w 451 (462)
T PRK15034 388 SDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW 451 (462)
T ss_pred chhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 0 0111246777788888888889999988888877665 77888877766555554433
No 157
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.16 E-value=6.6e-09 Score=100.66 Aligned_cols=172 Identities=7% Similarity=-0.080 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
+..+...++...+.....++.+.|+. +.|++..+.+.+..... ....++.+++|++.||+ |+++.+.++.++..+..
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~l~-~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~~ 288 (390)
T TIGR02718 211 WSLLALALLSAMTAVSGFGLSKLYLV-DAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSLA 288 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH-hcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 44444445555555556666777876 47999999999888765 46667789999999998 99999888776653332
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC-CChhhhhhhhh
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE-RSKDYKTHLDR 229 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~-~~~~~~~~r~~ 229 (356)
+....... ....+ ....++....+.+++.+...+...+...+..++ +. +++
T Consensus 289 ~~~~~~~~-~~~~~---------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~ 340 (390)
T TIGR02718 289 LLWFAQAA-FWLAP---------------------GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGT 340 (390)
T ss_pred HHHHHHHH-cccCC---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHH
Confidence 22221110 00000 122333333444555666666667776676665 44 789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~ 273 (356)
.+++++...++|..++|.++|++.+..||+..|.+.+++.++++
T Consensus 341 ~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 341 DVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 99999988999999999999999999999888887766655443
No 158
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.16 E-value=5.6e-10 Score=111.04 Aligned_cols=150 Identities=12% Similarity=0.057 Sum_probs=120.3
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccc
Q 018406 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (356)
Q Consensus 97 ~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (356)
.++.++...+-+.+.+++.+++.++.++++.|.||+ .-.+.+..+.++..+..++....
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~-------------------- 131 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV-------------------- 131 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 356778888899999999999999999999999998 85665555555544444333332
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---
Q 018406 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--- 253 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~--- 253 (356)
.+.+.+++.|+++|+..++..|+...+++-.|..++ |+..+++++....+|+++|.+++..+.
T Consensus 132 --------~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~ 197 (495)
T KOG2533|consen 132 --------HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLN 197 (495)
T ss_pred --------hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence 158889999999999999999999999999999887 999999999999999999998887753
Q ss_pred ---hhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406 254 ---MEHGWGSAFGALAIAMGISNMLFFIGTP 281 (356)
Q Consensus 254 ---~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (356)
...||||.|.+.+++.++..++.++..|
T Consensus 198 ~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 198 GSGGLAGWRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred CCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence 3458999999998876655554444333
No 159
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.15 E-value=1.4e-09 Score=109.18 Aligned_cols=171 Identities=16% Similarity=0.077 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN------------AVNNFLGISQASSVLGGFLADAYLGRYWTI 139 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~------------~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i 139 (356)
+.+....++..+.+|++..+++.+++ +.|++...++. ...+..++..++.+++++++||+ |||+++
T Consensus 291 ~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l 368 (502)
T TIGR00887 291 LGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQ 368 (502)
T ss_pred HHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHH
Confidence 33334445566778888777788775 67876442211 12233445566788899999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 018406 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (356)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~ 219 (356)
+++.++..++.+++.+... .. .....+....+...++..+..+....+.+|.||++
T Consensus 369 ~~~~~~~~~~~~~l~~~~~-----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~ 424 (502)
T TIGR00887 369 LMGFFILTVLFFVLGFAYN-----HL-------------------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTR 424 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH-----hc-------------------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchh
Confidence 8888777766655554321 00 00111111111122222233455667789999998
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----------cchhHHHHHHHHHHHHHHH
Q 018406 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~----------~gw~~~f~i~~~~~~i~~~ 274 (356)
. |+...++.+....+|++++|.+.+++.+. .++...|++.+++.+++.+
T Consensus 425 ~------R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 425 Y------RSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred H------HHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 8 99999999999999999999999998874 2334456666555554443
No 160
>PRK10133 L-fucose transporter; Provisional
Probab=99.15 E-value=3.8e-09 Score=104.37 Aligned_cols=164 Identities=10% Similarity=0.035 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 73 FIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
...+..++.....+++..+++.|+ ++.+|++..+++.....+.++..++.+++|++.||+ |||+++.++.++.+++.+
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~ 340 (438)
T PRK10133 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCL 340 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHH
Confidence 334444555566666667788886 567899999999999999999999999999999998 999999888777665554
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
+..+.. .. ..+++..+.|+|.+...|+..+...+.++++. +...
T Consensus 341 ~~~~~~----------------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as 384 (438)
T PRK10133 341 ISAFAG----------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGS 384 (438)
T ss_pred HHHHcC----------------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccch
Confidence 433321 11 12455678899999999999999999987643 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHH
Q 018406 232 NFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 274 (356)
Q Consensus 232 ~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~ 274 (356)
++... ..+|+.++|.+.+++.+..| -+..|.++.++.++.+.
T Consensus 385 ~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~ 427 (438)
T PRK10133 385 SFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_pred hHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 33222 33578888889999998887 67888776665544433
No 161
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.14 E-value=4.1e-09 Score=105.10 Aligned_cols=174 Identities=10% Similarity=0.013 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchh-HHHHHHHHHHHH
Q 018406 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRY-WTIAIFTTIYLA 148 (356)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD----~~~GRr-~~i~~~~~l~~~ 148 (356)
-.+..+...+.+..+..+++.|+++.+|++...++.+..+.-+.-.+..|+.|+++| |+ ||| +.++++.+...+
T Consensus 11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i 89 (473)
T PRK10429 11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSV 89 (473)
T ss_pred hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHH
Confidence 334455566777777888999999999999999999999999999999999999999 65 984 555566666666
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+.+++... |.. +.+.....+++..++..++......+..++++|+.++.+ .|.
T Consensus 90 ~~~llf~~---p~~-------------------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~ 142 (473)
T PRK10429 90 VLFLLFSA---HLF-------------------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----ERE 142 (473)
T ss_pred HHHHHHcC---CCC-------------------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHH
Confidence 65555321 111 001234445555566678888888889999999886433 277
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-------cchhHHHHHHHHHHHHHHHH
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~-------~gw~~~f~i~~~~~~i~~~~ 275 (356)
+.+++.....++|+.+.+.+...+.+. .+|++...+.+++.++..++
T Consensus 143 ~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~ 196 (473)
T PRK10429 143 QLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTII 196 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence 777776666677766655544433222 24555544444444433333
No 162
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.14 E-value=9.9e-09 Score=98.42 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+...+...+....++....+.+.|+.+++|+++.+.+.+.....++..++.+++|+++||+ |||+.+.++.++..++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~ 287 (385)
T TIGR00710 209 WGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAV 287 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 3334444444555566666778888889999999999999999999999999999999998 999999888877777766
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
++...... .. .....+++..++.|+|.+...+.......|.+|+ . +++..
T Consensus 288 ~~~~~~~~----~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~------~g~~~ 337 (385)
T TIGR00710 288 LLEITAIL----GL-------------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-V------AGTAS 337 (385)
T ss_pred HHHHHHHh----cc-------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-c------chHHH
Confidence 65543210 00 0234445556678888888888888888888763 3 67788
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHH
Q 018406 232 NFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGA 264 (356)
Q Consensus 232 ~~~~~~~~i-G~~i~p~i~~~i~~~~gw~~~f~i 264 (356)
++++..... |+..++ +.+.+.+..+|...+..
T Consensus 338 ~~~~~~~~~~g~i~~~-~~~~~~~~~~~~~~~~~ 370 (385)
T TIGR00710 338 ALFGTLRLVLGAIVGY-LVSLIHGNTAWPMSLSC 370 (385)
T ss_pred HHHHHHHHHHHHHHHH-HHHhccccChHHHHHHH
Confidence 887766654 444455 44555444445444433
No 163
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.13 E-value=9e-09 Score=101.06 Aligned_cols=160 Identities=14% Similarity=0.008 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAGL 150 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-r~~i~~~~~l~~~g~ 150 (356)
..+.+..++...++-....+++.|+++++|++..+.+++.+.+.++..++++++|.++||+ || |+++.++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~ 83 (418)
T TIGR00889 5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLL 83 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHH
Confidence 3455555665555555668899999999999999999999999999999999999999997 65 778777777766655
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhh--------ccCCCCChh
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA--------DQFDERSKD 222 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~a--------d~f~~~~~~ 222 (356)
.+..+.. +...+++.+++.+++.+...+...+... |......
T Consensus 84 ~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~-- 133 (418)
T TIGR00889 84 FFAAQVT----------------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP-- 133 (418)
T ss_pred HHHHHhc----------------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC--
Confidence 5544431 3566677777777766555444433321 2111111
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 273 (356)
Q Consensus 223 ~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~ 273 (356)
+.+.++ .+|.+++|.+++++.....|. .|++.+++.++.+
T Consensus 134 ----~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~ 173 (418)
T TIGR00889 134 ----PIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG 173 (418)
T ss_pred ----Ceeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH
Confidence 333332 367888888888773332343 4555555444333
No 164
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.13 E-value=3.5e-09 Score=116.23 Aligned_cols=163 Identities=10% Similarity=-0.007 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA-DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~-~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
++..++..++..+..+.+..+++.|+.+.+|++.. ..+.+.+...++..++.+++|+++||+ ++++++.++.++..++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~ 312 (1146)
T PRK08633 234 LWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALS 312 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHH
Confidence 34444444444455556667889999999999998 899999999999999999999999998 9998888888777776
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+++.+.. +...++++.++.|++.++..+...+++.+.+|++. |++
T Consensus 313 ~~~~~~~~----------------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~ 358 (1146)
T PRK08633 313 LFLLPTAP----------------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGK 358 (1146)
T ss_pred HHHHHHhh----------------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhh
Confidence 66655432 35566677788899988888888999999999887 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIA 268 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~-~gw~~~f~i~~~~ 268 (356)
+++++++..++|.++++.+++.+... .++...|.+.+.+
T Consensus 359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 99999998899988888776655432 2344455444433
No 165
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.12 E-value=4.6e-09 Score=100.34 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
..+...+..++....++++..+++.|+++ +|++..+.+.+.+.+.++..++.++.|+++||+-+||+.+.++.++..++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 34555555566667777888889999864 79999999999999999999999999999999724566667777777777
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+.+.+... +... ...++.|++.+...+...+...+..++++ +++.
T Consensus 277 ~~~~~~~~~---------------------------~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~ 322 (355)
T TIGR00896 277 LCGLLFAPM---------------------------HGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAA 322 (355)
T ss_pred HHHHHHhhh---------------------------hHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHH
Confidence 665554310 1111 13456788888888777777766655433 3677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-hh
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WG 259 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~ 259 (356)
.+++.+...++|..++|.+.+++.++.| |.
T Consensus 323 ~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 323 LSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 7788777788889999999999998876 43
No 166
>PRK10054 putative transporter; Provisional
Probab=99.12 E-value=3.5e-09 Score=103.09 Aligned_cols=171 Identities=12% Similarity=-0.002 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV--MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~--~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
++...+..++..+.+..+..+++.|+... .+.+....+.+...+.+......++.|.+.||+ |+|+.+.++.++..+
T Consensus 208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~~ 286 (395)
T PRK10054 208 LLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFVI 286 (395)
T ss_pred ehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHHH
Confidence 34444445555555444555666676543 344555566677776666666678889999998 999999888888877
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+.+.+.+..+ +.+.++++.++.++|.+...+....++.+..|++. ++
T Consensus 287 ~~~~~~~~~~---------------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~ 333 (395)
T PRK10054 287 GLVGFIFSGN---------------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KA 333 (395)
T ss_pred HHHHHHHcch---------------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ce
Confidence 7766654311 34555667778888888777888888889888766 67
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
.+++..+ ...+|..+||.++|++.++.|....|++.+++..++.++.
T Consensus 334 ~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 380 (395)
T PRK10054 334 SYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLM 380 (395)
T ss_pred ehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHH
Confidence 7777654 4568999999999999999998888877666555444433
No 167
>PRK11462 putative transporter; Provisional
Probab=99.11 E-value=1.4e-08 Score=101.04 Aligned_cols=180 Identities=10% Similarity=0.049 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHH-HHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIA-IFTTIYL 147 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~i~-~~~~l~~ 147 (356)
+.-....+...+.+..+..++..|+++.+|+++..++.+..+.-+.-.+.-|+.|.++||. +|||+..+ ++.+.+.
T Consensus 12 ~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~ 91 (460)
T PRK11462 12 IGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFG 91 (460)
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHH
Confidence 3333455555666666777899999999999999999999999999999999999999974 59876555 5556666
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++.+++... |...+ ......+++...+..++......+..++.+|+.++.+ .|
T Consensus 92 i~~~llf~~---p~~s~-------------------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eR 144 (460)
T PRK11462 92 IVCVLAYST---PDLSM-------------------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QR 144 (460)
T ss_pred HHHHHHHhC---CCCCc-------------------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HH
Confidence 666555432 11111 1234455555566788888888899999999988644 38
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHHHHh
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~-------gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
++..++.....++|..+++.+...+.+.. +|.....+.+++.++..++.+.
T Consensus 145 t~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~ 202 (460)
T PRK11462 145 ISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFF 202 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 88999988888888888877665544332 4655555555544444433333
No 168
>PRK09848 glucuronide transporter; Provisional
Probab=99.11 E-value=4.9e-09 Score=103.60 Aligned_cols=162 Identities=14% Similarity=0.115 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.++...+..++...+++......+.|++..+|.+....+.......++..++.++.++++||+ |+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 345555566666666666666666677777887766555545545666778899999999998 9999999999888888
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh-hhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~-~~~r~ 228 (356)
.+.+.+.. . .+.+.+++..++.++|.+...+...++.+|..|.++-+. .++.+
T Consensus 308 ~~~~~~~~-------~-------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G 361 (448)
T PRK09848 308 YLLFFWVS-------V-------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG 361 (448)
T ss_pred HHHHHHcC-------c-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh
Confidence 76665421 0 135556667788899999999999999999988543211 12358
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
..++.+++...+|.++++.+.+++.+..||
T Consensus 362 ~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 362 LTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 888899999999999999999888766555
No 169
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.11 E-value=2.2e-08 Score=97.39 Aligned_cols=164 Identities=10% Similarity=-0.020 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
++..+...++.....++...+++.++.+++|++..+.+.+...+.++..++.++.+++.||. +|+..+. +.++..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~-~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAG-APLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHH-HHHHHHHHH
Confidence 44444444555555556666664555567899999999999999999999999999999995 5554444 333333332
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+.+.... .+.+.+++..++.|++.+...+...+++.+..|++ .+..
T Consensus 296 ~~l~~~~---------------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~ 341 (394)
T PRK10213 296 LVLTLWG---------------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKA 341 (394)
T ss_pred HHHHHHh---------------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHH
Confidence 2222221 13455666778889998888888888888887733 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~ 270 (356)
.+++....++|..+|+.++|++.+..|++..+...+++.+
T Consensus 342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~ 381 (394)
T PRK10213 342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLML 381 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence 5556667788999999999999998888877776655443
No 170
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.11 E-value=2.8e-09 Score=101.87 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.+..-++..++-+=...++......|..+++|++..+...+....++.+.++++++|+|.||+ |-|+++.++.+++.+.
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~~ 331 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSIA 331 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHHH
Confidence 444444555555555556777778899999999999999999999999999999999999997 9999999999888776
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+...+.. ....+++.-.+.|+..|+.++..-++.+++.|+++ -+.
T Consensus 332 ~~~~~~~~----------------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~ 377 (438)
T COG2270 332 ALYLIFLE----------------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGR 377 (438)
T ss_pred HHHHHHcc----------------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccc
Confidence 66555432 12334444568889999999999999999999887 799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~ 277 (356)
+|++|++..-..+.+||+..+.+.+.+| -|.++....++.++++++++
T Consensus 378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 9999999999999999999999888776 67777666666666655543
No 171
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.09 E-value=1.7e-12 Score=128.05 Aligned_cols=134 Identities=20% Similarity=0.242 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchh
Q 018406 106 DSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSW 185 (356)
Q Consensus 106 ~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (356)
..++..+...++..+|.+++|+++||+ |||++++++.++.+++.++..++.. ..
T Consensus 47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~-------------------------~~ 100 (451)
T PF00083_consen 47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS-------------------------YN 100 (451)
T ss_pred HHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc-------------------------cc
Confidence 467888999999999999999999998 9999999999999999988877631 01
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh---hcchhHHH
Q 018406 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM---EHGWGSAF 262 (356)
Q Consensus 186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~---~~gw~~~f 262 (356)
+...+.++|++.|+|.|+..+..+.++.|..|++. |+....+.+....+|..++.++...+.. ..+||+.+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~ 174 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc
Confidence 47789999999999999999999999999999887 8888888888888888887765543322 23599888
Q ss_pred HHHHHHHHH
Q 018406 263 GALAIAMGI 271 (356)
Q Consensus 263 ~i~~~~~~i 271 (356)
.+..+..++
T Consensus 175 ~~~~~~~l~ 183 (451)
T PF00083_consen 175 IFGAIPSLL 183 (451)
T ss_pred ccccccccc
Confidence 776665433
No 172
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.09 E-value=3.2e-08 Score=96.40 Aligned_cols=151 Identities=15% Similarity=0.207 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 018406 91 NMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (356)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (356)
..+.|+.+++|++..+.+.+.... .++..++.+++|+++||+ |||+.+.++.++..+..+.+...... ++
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~----~~---- 301 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVT----PK---- 301 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhc----CC----
Confidence 344567778999999888887654 456888999999999998 99998877776665554433221110 00
Q ss_pred cccccccCCCCCcchhhHHHHHHHH----HHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH
Q 018406 170 DRISQLLGSCEPAKSWQMLYLYTVL----YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA 245 (356)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~----~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~ 245 (356)
+.+.++++. +..+++.+...+....+..+.+|.++ ++ ++.....+|..++
T Consensus 302 ----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~l~~~~~ 355 (402)
T PRK11902 302 ----------------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------YA----LLSALASVGRVYV 355 (402)
T ss_pred ----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------HH----HHHHHHHHHHHHH
Confidence 233334333 34556666667777778888777544 33 3333345566555
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 246 FTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 246 p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
..++|++.+..||+..|.+.+++.++++++.
T Consensus 356 ~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 356 GPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999988777776665544
No 173
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.07 E-value=5.1e-09 Score=115.10 Aligned_cols=184 Identities=6% Similarity=-0.174 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.++..++..++..+.++++.++++.|+.+.+|.+....+.+.+.+.++..++.++.|+++|++ ++++.+.++.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 455566666666666677778899999999999999999999999999999999999999987 6666555555554444
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+.+.+... ....+....+ ...+-. ...+.+.++++.++.|++.+...+...+++.+.+|++. +|+
T Consensus 305 ~~~l~~~~~-~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~ 370 (1140)
T PRK06814 305 GLDLAFASS-SVPAEPAQLK------SILVFL-SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RAR 370 (1140)
T ss_pred HHHHHhccc-cccccccccc------chhhhh-cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------cee
Confidence 433332100 0000000000 000000 00134566677788899999988899999999999888 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALAIA 268 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~-~~gw~~~f~i~~~~ 268 (356)
+++.+++..++|..+++++.+.+.+ ..++...|.+.+++
T Consensus 371 v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 371 VIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999988874 34566555554443
No 174
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.07 E-value=8.6e-09 Score=96.71 Aligned_cols=185 Identities=13% Similarity=0.045 Sum_probs=124.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccc
Q 018406 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (356)
Q Consensus 93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 172 (356)
..-+....|.+..+...+......+..+++..+|.++|++ |||+...+..+...+..++-..+ |
T Consensus 101 ~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s-------p-------- 164 (528)
T KOG0253|consen 101 LPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS-------P-------- 164 (528)
T ss_pred HHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC-------C--------
Confidence 3345566788888899999999999999999999999998 99999887777666555443332 2
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018406 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i 252 (356)
++..+++.+.+.++|.|+ .+...+.-.|..|..+ |....-.. ....+|..+...+.-.+
T Consensus 165 -------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~law~v 223 (528)
T KOG0253|consen 165 -------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALLAWGV 223 (528)
T ss_pred -------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHHHHHH
Confidence 577889999999999999 7888888889988766 44444333 34567777777666666
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHhhcccccc-cCCCCChhHHHHHHHHHHHhccccCCCCccc
Q 018406 253 QMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH-RLPGGSPLTRVAQVLVAAFRKRHAAFSSSEL 316 (356)
Q Consensus 253 ~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~ 316 (356)
..+.||||-+........+.+++ .+..+.-++ .-.+|++ .+++..+.+.-|.+..+.|--..
T Consensus 224 m~~~gwr~~l~~~~~pl~~~a~f-~~w~~ESpRf~~~~G~~-~kAletL~kiArmNg~qlplgvl 286 (528)
T KOG0253|consen 224 MSNFGWRYLLFTSSTPLMFAARF-LVWVYESPRFYLAKGDD-YKALETLHKIARMNGKQLPLGVL 286 (528)
T ss_pred HHhhhHHHHHHHHHhHHHHHHHH-HhhcccCcchhhhcCCh-HHHHHHHHHHHHhcCCCCCccee
Confidence 67789998776655443333222 222222111 1123443 34456666666655666664433
No 175
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.06 E-value=1.9e-08 Score=101.22 Aligned_cols=164 Identities=10% Similarity=0.051 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 018406 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCA 157 (356)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~ 157 (356)
.++..+....+...+|.+..+.+|.+....+.+.+++.++..++.++.+.+.+++ ++++.+..+.+++.++.+.++++.
T Consensus 227 ~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~lal~~ 305 (524)
T PF05977_consen 227 SFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLALSP 305 (524)
T ss_pred HHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHhcch
Confidence 3333333334455578888889999999999999999999999999999999997 999988888888877776666542
Q ss_pred hccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHH
Q 018406 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~ 237 (356)
+.+..+++.++.|++.........+..-...|++. ||+.+++++..
T Consensus 306 ----------------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~ 351 (524)
T PF05977_consen 306 ----------------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMV 351 (524)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHH
Confidence 46666777888898888888888888888888877 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 238 VTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 238 ~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
...+..+|.++.|++.+.+|-+..+.+.+++++++.++.
T Consensus 352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888877766655554443
No 176
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.06 E-value=8.9e-10 Score=108.30 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchhHHHH-HHHHHHHHHHHHH
Q 018406 79 MAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD----AYLGRYWTIA-IFTTIYLAGLTGI 153 (356)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD----~~~GRr~~i~-~~~~l~~~g~~~~ 153 (356)
+...+.+..+..++..|+++.+|+++...+.+..+..+...+..|+.|.++| |+ |||+.++ ++.++..++.+++
T Consensus 11 ~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~ll 89 (428)
T PF13347_consen 11 LGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLL 89 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHh
Confidence 4555666666678889999999999999999999999999999999999999 66 9876555 6667777776666
Q ss_pred HHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHH
Q 018406 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF 233 (356)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~ 233 (356)
.... | . ..+.......+++..++..++......+..++++|+.++.+ +|.+..++
T Consensus 90 f~~~--p----~--------------~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~ 144 (428)
T PF13347_consen 90 FSPP--P----A--------------GLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSW 144 (428)
T ss_pred hccc--c----c--------------hhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHH
Confidence 5420 0 0 00011134445666667788888899999999999998654 37888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHHHHhhccc
Q 018406 234 FYLSVTVGAIVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPL 282 (356)
Q Consensus 234 ~~~~~~iG~~i~p~i~~~i~~~~-------gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (356)
..+...+|..+...+.+.+.+.. +|++.+.+.+++.++..++.....++
T Consensus 145 ~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 145 RMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 87777787766655555444322 57777777766666655555555444
No 177
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.05 E-value=1.4e-08 Score=99.05 Aligned_cols=153 Identities=11% Similarity=0.034 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406 88 LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (356)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (356)
+..+++.|+++..+ +..+.+.+.+...++..++....+++.|+.++.++.+..+.++..++.+++....
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------- 295 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------- 295 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence 44567788876555 5566777766665555544444566665543766677777777777766555431
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (356)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~ 247 (356)
+...+++...+.++|.+...+...++..+..|++. +++.+++++....+|..+||.
T Consensus 296 ------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~ 351 (400)
T PRK11646 296 ------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYI 351 (400)
T ss_pred ------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhccc
Confidence 24445555667778877777888899999999877 899999999999999999999
Q ss_pred HHHHHHhhc---c-hhHHHHHHHHHHHHHHHH
Q 018406 248 LVVYIQMEH---G-WGSAFGALAIAMGISNML 275 (356)
Q Consensus 248 i~~~i~~~~---g-w~~~f~i~~~~~~i~~~~ 275 (356)
+.|++.+.. + ....|.+..++.++.++.
T Consensus 352 l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 352 GGGWLFDLGKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred chHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence 999998764 2 234555544444444433
No 178
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.04 E-value=3e-08 Score=93.07 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
..|.+.+..-+.++.+|.+..++|.++. +.|+|..+++..++...+......+++-.+++|.-.+|+......+++.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3588888888899999999999999986 689999999999999999999999999999998767899999999999999
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+.+.+.. . +...+. .+++|+|.|+..+....++.+...+.+ .-+.
T Consensus 288 ~~G~~~~P-------~--------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~ 333 (395)
T COG2807 288 LVGLLLAP-------G--------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA-----IAAA 333 (395)
T ss_pred HHHHHHhh-------h--------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH-----HHHH
Confidence 98887652 1 233333 478999999999999999999887644 2566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 269 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~ 269 (356)
..++-+-...+=+++||++.|++-|..| |...+...+.+.
T Consensus 334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~ 374 (395)
T COG2807 334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT 374 (395)
T ss_pred HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence 6666676677778889999999999886 877766554443
No 179
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.04 E-value=8.4e-09 Score=101.37 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
|....+++..++..++.....+..+.|.+..+|.+ ...+.+..+..++..++.++.++++||+ |+|+++.++.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 44566777777777777666667777777778777 5567777788899999999999999998 999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChh-hhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHL 227 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~-~~~~r 227 (356)
+.+++.+... .+.+.+++..++.|++.++......++++|..+.++-+ .+++-
T Consensus 303 ~~~~~~~~~~--------------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~ 356 (428)
T PF13347_consen 303 GFLLLFFLGP--------------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRRE 356 (428)
T ss_pred HHHHHHHHHh--------------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCch
Confidence 8888777531 15778888889999999999999999999999855432 23346
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
|..++.+.+...+|.+++..+.+.+.+..|+
T Consensus 357 g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 357 GMYFSVNSFFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence 8888889999999999999999888766554
No 180
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.02 E-value=7.5e-08 Score=93.27 Aligned_cols=177 Identities=11% Similarity=-0.035 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHHHHHHHHHHHHH-HHHHHhhcchhHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAV--NNFLGISQASSVLG-GFLADAYLGRYWTIAIFTTIYL 147 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~--~~~~~~~~~~~~~~-G~lsD~~~GRr~~i~~~~~l~~ 147 (356)
...+....+.+.+.+..+...++.|++ +.|.+..+.+... ........+.+++. ++++||+ ||||.+++...+..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 344555566666666556666777765 6799999998863 44455554455444 6689997 99998766653322
Q ss_pred H-HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 148 A-GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 148 ~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
. ....+.... +. . .....+....++.++..+...+..-++..|..+.+.
T Consensus 81 ~~~~~~~~~~~--~~--~--------------------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------ 130 (390)
T TIGR02718 81 SACLASLALVG--PD--V--------------------AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------ 130 (390)
T ss_pred HHHHHHHHcCC--cc--h--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------
Confidence 2 222222110 00 0 012233334444556666666666667777766554
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (356)
++...+.+..+..+|..+++.+.+++.+..||+..|++.+++.++..+..+..
T Consensus 131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 66667777777788999999888899999999999998887766555444333
No 181
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.01 E-value=3.5e-08 Score=95.29 Aligned_cols=166 Identities=10% Similarity=-0.034 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hHHHHH-HHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR---YWTIAI-FTT 144 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR---r~~i~~-~~~ 144 (356)
+.+|.+.+..++....+|++.++++.|+. +.|++.. ++....+..+...++ .++++||+ .| |+.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALR-PAGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence 45688888899999999999999999996 4678764 454444444444433 57888886 54 333222 222
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+..++...+.... +....++...+.+++..+..+...++.+|.+|++.
T Consensus 266 ~~a~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~---- 313 (368)
T TIGR00903 266 LIAAFFLALAFEL----------------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL---- 313 (368)
T ss_pred HHHHHHHHHHHcc----------------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh----
Confidence 2222222222110 12223334455566666666778899999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 276 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~ 276 (356)
|++..++.+...++|+.++|.+.+.+.. +....|.+.++..+++.+..
T Consensus 314 --rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 314 --HGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred --cCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887763 55556666666555554443
No 182
>TIGR00898 2A0119 cation transport protein.
Probab=99.00 E-value=1.4e-08 Score=101.64 Aligned_cols=129 Identities=14% Similarity=0.044 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHH
Q 018406 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYT 192 (356)
Q Consensus 113 ~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (356)
...+....+.+++++++||+ |||+++.++.++..++.+++.+... ......++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~~ 415 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV--------------------------DLYFLRTA 415 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC--------------------------CchHHHHH
Confidence 34556677888999999998 9999999988887777665554311 01223333
Q ss_pred HHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (356)
Q Consensus 193 ~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~ 272 (356)
..++.+++.++..+....+.+|.+|++. |+..+++.+....+|+.++|.+.+ + ...++...+.+.+++.+++
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~ 487 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLA 487 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHH
Confidence 4455556666667788899999999877 899999999999999999998888 3 3445566666666655554
Q ss_pred HHHH
Q 018406 273 NMLF 276 (356)
Q Consensus 273 ~~~~ 276 (356)
.++.
T Consensus 488 ~~~~ 491 (505)
T TIGR00898 488 GILT 491 (505)
T ss_pred HHHH
Confidence 4443
No 183
>PRK09848 glucuronide transporter; Provisional
Probab=99.00 E-value=5e-08 Score=96.45 Aligned_cols=157 Identities=11% Similarity=0.063 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHH-HHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFT 143 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~i-~~~~ 143 (356)
++..+.-.+..+...+.+..+..++..|+++.+|++..+++.+..+..+...+..++.|+++||. +|||+.+ +++.
T Consensus 7 ~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~ 86 (448)
T PRK09848 7 WRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGT 86 (448)
T ss_pred HHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHH
Confidence 33334444455566677666777788899999999999999999999999999999999999995 4777755 4555
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (356)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~ 223 (356)
+...+..+++.... ....+ ......+++...+.+++.+...++..++..++..+.+ +
T Consensus 87 ~~~~~~~~~~~~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~--~ 143 (448)
T PRK09848 87 APLMIFSVLVFWVP--TDWSH-------------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ--S 143 (448)
T ss_pred HHHHHHHHHHHhCc--CCCCc-------------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH--H
Confidence 54444433332110 00000 1123444445566788888888787787777776533 2
Q ss_pred hhhhhhHHHHHHHH-----HHHHHHHHHHHHH
Q 018406 224 KTHLDRFFNFFYLS-----VTVGAIVAFTLVV 250 (356)
Q Consensus 224 ~~~r~~~~~~~~~~-----~~iG~~i~p~i~~ 250 (356)
|....++..++ .+++..++|++.+
T Consensus 144 ---r~~~~~~r~~~~~~~~~~~~~~~~p~i~~ 172 (448)
T PRK09848 144 ---RARLGAARGIAASLTFVCLAFLIGPSIKN 172 (448)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443 3345555665554
No 184
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.00 E-value=6.5e-08 Score=90.86 Aligned_cols=161 Identities=19% Similarity=0.179 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 018406 81 ERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMK 160 (356)
Q Consensus 81 ~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~ 160 (356)
-+-...++ ..+..-+.+++|++.+.++.+.++..+...+.+++..+|+-|+ |-.+.+..+.++..+|.++=...
T Consensus 24 LR~~itsv-gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~---- 97 (395)
T COG2807 24 LRPAITSV-GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG---- 97 (395)
T ss_pred cchhhhhh-hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc----
Confidence 34454444 4466778999999999999999999999999999999999997 99999999999998888775542
Q ss_pred ccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHH
Q 018406 161 VFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~i 240 (356)
+...++.+-.+.|.|.+......|+.+-+-||.+ .+..++.|..+.++
T Consensus 98 -------------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~ 145 (395)
T COG2807 98 -------------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGA 145 (395)
T ss_pred -------------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHH
Confidence 3677888889999999999999999999999965 48889999999999
Q ss_pred HHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHhh
Q 018406 241 GAIVAFTLVVYIQMEH-GWGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 241 G~~i~p~i~~~i~~~~-gw~~~f~i~~~~~~i~~~~~~~~ 279 (356)
|+++++.+...+.++. ||+....+=+...++++++.+..
T Consensus 146 ~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq 185 (395)
T COG2807 146 GAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQ 185 (395)
T ss_pred HHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999888877 69988776666666666665554
No 185
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=98.97 E-value=1.5e-07 Score=88.70 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=107.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccc
Q 018406 93 VTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (356)
Q Consensus 93 ~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 172 (356)
...+-+++|++..+.+.+.....+...+..++.|.++||+ |||+..++.++++.+..+....
T Consensus 57 ~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~----------------- 118 (354)
T PF05631_consen 57 LYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHS----------------- 118 (354)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhc-----------------
Confidence 3344568999999999999999999999999999999998 9999999999988877653221
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHH
Q 018406 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVY 251 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~-~~~~iG~~i~p~i~~~ 251 (356)
.+...++++|++.|++.....++.-+........+.-++ ...+..++... +...+-++++.+++.+
T Consensus 119 ------------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~ 185 (354)
T PF05631_consen 119 ------------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANV 185 (354)
T ss_pred ------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHH
Confidence 258889999999999999988887776655444332111 11344444332 2222333444445556
Q ss_pred HHhhcch--hHHHHHHHHHHHHHHHHHHh
Q 018406 252 IQMEHGW--GSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 252 i~~~~gw--~~~f~i~~~~~~i~~~~~~~ 278 (356)
+.+..+. ..+|.....+.+++.+++..
T Consensus 186 l~~~~~~g~vaPF~~a~~~l~~~~~~I~~ 214 (354)
T PF05631_consen 186 LADWFGFGPVAPFDAAIVLLAVAAVLILK 214 (354)
T ss_pred HHHHhCCCCcchHHHHHHHHHHHHHHHHh
Confidence 6666554 67888777776666655443
No 186
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.97 E-value=3.1e-08 Score=94.56 Aligned_cols=145 Identities=10% Similarity=0.038 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFL-GISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~-~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
.++.+++..++..++++.+.+.++.|+++ +|++..+.+.+..+.. ++..++.+++|+++||+ |||+.+.++.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 35666666666778888888889999876 9999999888887655 57788999999999998 999998888877776
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+..+..+..... .+ +. ....+.+.++.+.++.+++.+...+...++..|.+|++. ++
T Consensus 288 ~~~~~~~~~~~~---~~------------~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g 344 (356)
T TIGR00901 288 TNAGFVWLASNG---HH------------DG--ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GA 344 (356)
T ss_pred HHHHHHHHHhcC---cc------------cc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cH
Confidence 655444321100 00 00 000134556667778899999999999999999999988 89
Q ss_pred hHHHHHHHHHH
Q 018406 229 RFFNFFYLSVT 239 (356)
Q Consensus 229 ~~~~~~~~~~~ 239 (356)
+.+++++...+
T Consensus 345 ~~~g~~~~~~~ 355 (356)
T TIGR00901 345 TQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHh
Confidence 99988776543
No 187
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.97 E-value=4.7e-09 Score=100.99 Aligned_cols=121 Identities=16% Similarity=0.140 Sum_probs=94.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCC
Q 018406 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEP 181 (356)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (356)
++....+.+..+..++..+|+++.|+++|++ |||++|...+++++++.+++.++ .|..
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s---------------------~~~~ 138 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLS---------------------VGTT 138 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccC---------------------CCCC
Confidence 6677888889999999999999999999998 99999999999999999855543 1233
Q ss_pred cchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHH----HHHHHHHHHHHHHHHH
Q 018406 182 AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFF----YLSVTVGAIVAFTLVV 250 (356)
Q Consensus 182 ~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~----~~~~~iG~~i~p~i~~ 250 (356)
+...-+.++...|+++|+|.|+=.|...+..+|....+. ||.+.++. .++...|+.++-++.+
T Consensus 139 ~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~------RGa~iaavFa~Qg~GilaG~ivt~Iv~~ 205 (538)
T KOG0252|consen 139 SPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT------RGAFIAAVFAMQGFGILAGGIVALIVSA 205 (538)
T ss_pred CCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc------ccceeEEEEEecchhHhhccHHHHHHHH
Confidence 333467889999999999999999999999999877665 66655543 3444555555544443
No 188
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.94 E-value=7.5e-08 Score=96.04 Aligned_cols=165 Identities=13% Similarity=-0.015 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
|.++.+++..++..+..+......+.|++..++ +....+.+..+..++..++.++.++++||+ |+|++++++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 556666677777766666555554444433333 445555666666678888899999999998 999999988887776
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC-hhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS-KDYKTHL 227 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~-~~~~~~r 227 (356)
+.+.+.+.... +. .+...+++..++.+++.+...+...++++|..|.++ +..+++.
T Consensus 309 ~~~~~~~~~~~----~~-------------------~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~ 365 (473)
T PRK10429 309 SCGVLLLMGLA----AP-------------------HNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE 365 (473)
T ss_pred HHHHHHHHhcc----Cc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence 66555432100 00 135556666677889989888999999999987432 1222345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
|..++.+.+..-+|.++++.+.+++.+..|+
T Consensus 366 G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 366 SIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6678888899999999999999998776665
No 189
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.94 E-value=1.5e-07 Score=91.66 Aligned_cols=155 Identities=6% Similarity=-0.066 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCC
Q 018406 85 YFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMP 164 (356)
Q Consensus 85 ~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~ 164 (356)
...+...++.|+++.+|++..+.+.+.....++..++.++.+++.|++ ++++++.++.++ .+..+.+...
T Consensus 221 ~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~-------- 290 (393)
T PRK11195 221 GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ-------- 290 (393)
T ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH--------
Confidence 334444566788888999999999999999999999999999999997 988888777433 2222222221
Q ss_pred CCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 018406 165 NQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (356)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i 244 (356)
.+.+...+..++.|++.+...++..+.+.+..|++. ++++.++..++..++|..+
T Consensus 291 --------------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~ 345 (393)
T PRK11195 291 --------------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLL 345 (393)
T ss_pred --------------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHH
Confidence 134445566678888888877777787777544332 2688999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 245 AFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 245 ~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
+..+.+.+ ..+|-++.+.+.....++.+.+
T Consensus 346 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 346 MLGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 99888755 5677666666655544444333
No 190
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.92 E-value=3.4e-08 Score=97.95 Aligned_cols=182 Identities=16% Similarity=0.171 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR----YWTIAIFT 143 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR----r~~i~~~~ 143 (356)
-+.+|.+.+..++...+++.+..++|.|+.+.+|++..+.+...++..+...+..+++|.++|+...| +.+..+..
T Consensus 257 s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn 336 (466)
T KOG2532|consen 257 SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFN 336 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999997331 11222222
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (356)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~ 223 (356)
.+...+...+.+... +. .|. .. ......+.++..+.|+..++..-+ ..|..|.+
T Consensus 337 ~i~~~~~ai~l~~l~---~~----~~~----------~~-~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~apq~---- 390 (466)
T KOG2532|consen 337 TIAFGGPAVFLLVLA---FT----SDE----------HR-LLAVILLTIAIGLSGFNISGFYKN----HQDIAPQH---- 390 (466)
T ss_pred hHHHHHHHHHHHeee---ec----CCC----------cc-hHHHHHHHHHHHHcccchhhhHhh----hhhccchH----
Confidence 222222211111110 00 111 00 011222222223333333332222 22223322
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHHh
Q 018406 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 224 ~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~---~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
-+.++++.++..++.+.++|.+.+++... ..|++.|.+.+++.+++.+++.+
T Consensus 391 ---a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 391 ---AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence 57888899999999999999999988832 36999999999988877766544
No 191
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.91 E-value=3.4e-07 Score=87.82 Aligned_cols=146 Identities=10% Similarity=-0.098 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+..++..++.....+.+..+.+.|+.+.+|++..+.+.......++..++.+++|+++||+ |||+++.++.++..+..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 275 (377)
T PRK11102 197 LGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGI 275 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH
Confidence 3334444444445555556667778888999999999999999999999999999999998 999999988876544333
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
.+...... + .....+.++..+.+.+.+...........|..| +. +++..
T Consensus 276 ~~~~~~~~----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~ 324 (377)
T PRK11102 276 WLVVSALL----D--------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTAS 324 (377)
T ss_pred HHHHHHHH----h--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHH
Confidence 33222100 0 023333444444444445555555566667666 33 56666
Q ss_pred HHHHHH-HHHHHHHHHHHH
Q 018406 232 NFFYLS-VTVGAIVAFTLV 249 (356)
Q Consensus 232 ~~~~~~-~~iG~~i~p~i~ 249 (356)
+.++.. ..+|+.+++.+.
T Consensus 325 ~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 325 SLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 665543 345556666543
No 192
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.91 E-value=2e-08 Score=94.78 Aligned_cols=143 Identities=20% Similarity=0.245 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
|..+...++..+.++.+..+++.|+.+.+|++ ..+.+.+..+..++..++.++.|+++||+ |+++.+.+......++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 287 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGA 287 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHH
Confidence 33444455555566677788899989999999 78999999999999999999999999997 98888777777766666
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+.+.+... ..+....++..++.|++.+...+....+..|.+|++. +++.
T Consensus 288 ~~~~~~~~-------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 336 (352)
T PF07690_consen 288 LGLLLLPF-------------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTA 336 (352)
T ss_dssp HHHCCSHH-------------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHH
T ss_pred HHHHHHHH-------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHH
Confidence 55544321 0134566667788999999999999999999999877 9999
Q ss_pred HHHHHHHHHHHHHHHH
Q 018406 231 FNFFYLSVTVGAIVAF 246 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p 246 (356)
.++++...++|+.++|
T Consensus 337 ~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 337 FGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999999999887
No 193
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.89 E-value=2.6e-07 Score=91.33 Aligned_cols=186 Identities=12% Similarity=0.018 Sum_probs=118.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+..++..+.++.+.++..+..........+.+-.+-|++..++.++.........+..+++.++.||+ |||+.++++..
T Consensus 265 ~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~ 343 (485)
T KOG0569|consen 265 PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLS 343 (485)
T ss_pred cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHH
Confidence 34455567777777776665443444444555567899999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHH-HHHHHHHHHHHhhhc-hhhhhhhhhhccCCCCChh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQML-YLYTVLYITGFGAAG-IRPCVSSFGADQFDERSKD 222 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~gig~g~-~~~~~~~~~ad~f~~~~~~ 222 (356)
+..+..+++.+...+.... ..-.. ..+++.++..++.+. .-+...-+.+|+||...
T Consensus 344 ~~~~~~~~~~~~~~l~~~~--------------------~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~-- 401 (485)
T KOG0569|consen 344 LMAVALLLMSIALFLSNSF--------------------GSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA-- 401 (485)
T ss_pred HHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc--
Confidence 9888887777654321100 00011 123333333333322 34556677899999887
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 223 YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 223 ~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
|..++.+-.....+..++-.+....+.+..|- ..|.+..+..++..+.++.
T Consensus 402 ----R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~ 452 (485)
T KOG0569|consen 402 ----RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYR 452 (485)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHH
Confidence 78877776666555555555455556666553 3444444444444443333
No 194
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=98.89 E-value=3.8e-08 Score=96.75 Aligned_cols=187 Identities=13% Similarity=0.042 Sum_probs=136.0
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH
Q 018406 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWT 138 (356)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-r~~ 138 (356)
....+.+||.+++..+.+++..+.++.+....-.|+++ +.+-+....|++++...++..++.++.|+.+.|. |. |+.
T Consensus 26 ~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~P 104 (488)
T KOG2325|consen 26 LDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKP 104 (488)
T ss_pred ccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccC
Confidence 44557889999999999999988888777777778864 3667777889999999999999999999999997 75 778
Q ss_pred HHHHHHHHHHHHHHH-HHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 018406 139 IAIFTTIYLAGLTGI-TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (356)
Q Consensus 139 i~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~ 217 (356)
++.|.++.++|.++- ++... ++ ....++.++|++.|+|.|. .+..-+|+++--.
T Consensus 105 li~s~ii~~~g~llY~~l~~~-----~~-------------------~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~ 159 (488)
T KOG2325|consen 105 LIVSFLIAIIGNLLYLALAYV-----PN-------------------GVKYLMLVARILTGVGVGN-FAVLRAYIADAST 159 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----cc-------------------chHHHHHHHHHHcCcCccc-HHHHHHHHHhccC
Confidence 888999999988887 44321 11 1478889999999999665 5678889999766
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHhhc---------chhHHHHHHHHHHHHHHHHHHhh
Q 018406 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY----IQMEH---------GWGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~----i~~~~---------gw~~~f~i~~~~~~i~~~~~~~~ 279 (356)
.++ |.+++.....+..+|..+||.+... ..+.+ -+..+-|+++++.++.++++.+.
T Consensus 160 ~~d------R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~ 228 (488)
T KOG2325|consen 160 VED------RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF 228 (488)
T ss_pred ccc------hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence 666 6666666555555566666654433 22211 13345566666665555555443
No 195
>PRK11043 putative transporter; Provisional
Probab=98.88 E-value=5.8e-07 Score=87.28 Aligned_cols=148 Identities=12% Similarity=-0.007 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 018406 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATM 159 (356)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~ 159 (356)
+....++.+..+++.|++ ++|++..+.+.......++..++.++++++.||+ |+|+.+....++..++.+.+......
T Consensus 214 ~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (401)
T PRK11043 214 ACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLL 291 (401)
T ss_pred HHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555666777765 5899999888887777888889999999999997 99987766655555444333222110
Q ss_pred cccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHH
Q 018406 160 KVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 239 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~ 239 (356)
. . .....++++..+.+++.+...+.......+.+|+ . +++..++++....
T Consensus 292 ~---~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~ 341 (401)
T PRK11043 292 S---H--------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQL 341 (401)
T ss_pred c---c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHH
Confidence 0 0 0234445556677888888888777777777763 3 7888888888777
Q ss_pred HHHHHHHHHHHHHHhhcchh
Q 018406 240 VGAIVAFTLVVYIQMEHGWG 259 (356)
Q Consensus 240 iG~~i~p~i~~~i~~~~gw~ 259 (356)
.++.+++.+.+.+.+.....
T Consensus 342 ~~~~~~~~~~g~l~~~~~~~ 361 (401)
T PRK11043 342 GLCFLASLLVSALISTPLLT 361 (401)
T ss_pred HHHHHHHHHHHHccCCChhH
Confidence 78888888888776643333
No 196
>PRK09669 putative symporter YagG; Provisional
Probab=98.88 E-value=2e-07 Score=92.11 Aligned_cols=159 Identities=11% Similarity=0.022 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+.+++..++...+.. +...+..|+.+..--+....+.+.....+...++.+++++++||+ |+|+.+.++.++..++.+
T Consensus 232 ~~l~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~ 309 (444)
T PRK09669 232 RIMFIFNVVLLTAVV-TRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSA 309 (444)
T ss_pred HHHHHHHHHHHHHHH-HHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHH
Confidence 333444444333332 222334444333222233334455556677778888999999997 999999888776654433
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChh-hhhhhhhH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRF 230 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~-~~~~r~~~ 230 (356)
.+.+.. + .+...+++..++.|++.++..+...++++|..|.++.+ .+++.+..
T Consensus 310 ~~~~~~------~--------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~ 363 (444)
T PRK09669 310 LIFFIP------P--------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLV 363 (444)
T ss_pred HHHHhC------c--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHH
Confidence 322211 1 14556677778899999999999999999999844322 22345677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
++.+.+...+|.++++.+.+++.+..|+
T Consensus 364 ~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 364 FSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7888899999999999999998877666
No 197
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.87 E-value=5.6e-07 Score=87.08 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 018406 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (356)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~ 156 (356)
.+....+.|+++++|++..+.+.......++..++.++.+++.||+ |||++++++.++..++.+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~ 289 (392)
T PRK10473 221 TFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALS 289 (392)
T ss_pred HHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556778888999999999888889999999999999999998 99999999988888877766654
No 198
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.85 E-value=2.8e-07 Score=90.38 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=121.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHH-HHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTI-AIFT 143 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~i-~~~~ 143 (356)
++.-+--...-+..++.+-.+..++..|.+..+|+++..++.+..+.-+.-++.-|+.|.++||. +||+|.. +++.
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ 90 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA 90 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence 33334444455556666666778899999999999999999999999999999999999999986 6886554 4555
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (356)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~ 223 (356)
+-+.+..+++..+.+ .+ .+......++..++.+++......+..++.+++-++.+
T Consensus 91 ip~~i~~~l~F~~p~---------~~-------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~--- 145 (467)
T COG2211 91 IPFAIVAVLLFITPD---------FS-------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ--- 145 (467)
T ss_pred HHHHHHHHHHHcCCC---------cc-------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH---
Confidence 667777666665421 01 01245566666788899999999999999999988755
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (356)
Q Consensus 224 ~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~ 254 (356)
.|.+..+|..+..++|..+...+...+.+
T Consensus 146 --ER~~l~s~R~~~~~~g~~l~~~~~~plv~ 174 (467)
T COG2211 146 --ERASLTSWRMVFASLGGLLVAVLFPPLVK 174 (467)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999998877766665554
No 199
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.85 E-value=4.6e-08 Score=98.08 Aligned_cols=176 Identities=14% Similarity=0.100 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH--HHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYW--TIAIFTTIY 146 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~--~i~~~~~l~ 146 (356)
+..+...+...+..++++.....++.|.. .++++..+++.++++..+...++-++.|+++|+. ..++ +..++.++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 56777777778888888888888888877 8999999999999999999999999999999997 6333 333444444
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
.+..+.+.+.. ++..++..-++.|+..|...+..+..+.|..+.++
T Consensus 376 gl~~~~~p~~~----------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------ 421 (509)
T KOG2504|consen 376 GLARLFLPFAT----------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------ 421 (509)
T ss_pred HHHHHHHHHhc----------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------
Confidence 44433333321 46677777788999999988888889999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHhhc
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFIGT 280 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~~~ 280 (356)
...++++..+...++..++|.+++++.+..| |...|+..+++.+++.++.++..
T Consensus 422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999999999999887 99999998888877776655543
No 200
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.85 E-value=1e-07 Score=89.59 Aligned_cols=150 Identities=13% Similarity=0.101 Sum_probs=105.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-----------------CChHHHHHHHHHHHHHHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM--H-----------------KSFADSSNAVNNFLGISQASSVLG 125 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~--~-----------------~s~~~a~~~~~~~~~~~~~~~~~~ 125 (356)
...++..+.+....+.+.+.+||+.-.....++... + .+...--.-+.+..+.-+-|.++.
T Consensus 322 p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt 401 (528)
T KOG0253|consen 322 PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLIT 401 (528)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHH
Confidence 334455577777888899999987654333332211 1 111222223344566777889999
Q ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchh
Q 018406 126 GFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIR 205 (356)
Q Consensus 126 G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~ 205 (356)
+++.||+ |||+++..+.+++.+.++++..+.. ++ ....+++.+|+++. +..
T Consensus 402 ~~iverl-GRKkTMal~l~~f~iflfll~~c~~-----rn-------------------~~tvllf~arafis----g~f 452 (528)
T KOG0253|consen 402 GVIVERL-GRKKTMALSLILFGIFLFLLTTCKT-----RN-------------------AYTVLLFTARAFIS----GAF 452 (528)
T ss_pred HHHHHHh-cchhHHHHHHHHHHHHHHHHHHhcC-----cc-------------------hhHHHHHHHHHHHh----chh
Confidence 9999996 9999999999999998888876532 11 12455666665553 345
Q ss_pred hhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406 206 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (356)
Q Consensus 206 ~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~ 249 (356)
.+.+.|-.|.+|+.. |+...+.-.-..-+|+++.|+++
T Consensus 453 qvaYvYtPEVyPTav------RatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 453 QVAYVYTPEVYPTAV------RATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred eEEEEecCcccchhh------hhcchhhhhhHHhhhhhhhhHHH
Confidence 567889999999988 88888887778899999999888
No 201
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.82 E-value=3.8e-07 Score=89.35 Aligned_cols=163 Identities=9% Similarity=-0.041 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.+...+..++......++.++++.|+.+. .+.+...++...+.+..+..++.+++++++||+ ++|+++.++.++.++.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 34445555555555556677888898643 245555566677777788899999999999997 9999988887777766
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.++..+.. +.. .....++.|++.+.+.|...+...+.++++. . .
T Consensus 313 ~ll~~~~~----------------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~-~ 356 (410)
T TIGR00885 313 CLGSIFAG----------------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------K-Y 356 (410)
T ss_pred HHHHHHcC----------------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------h-h
Confidence 65555431 112 2455667778888888999999999998654 1 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc------chhHHHHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGALAIAMGI 271 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~------gw~~~f~i~~~~~~i 271 (356)
......+ ..+|+++.|.+.|++.|.. +.+..|.++.++.+.
T Consensus 357 ~s~~l~~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 357 GAAGLVM-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred hHHHHHH-HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 1222222 3499999999999999954 477888887776543
No 202
>PRK11462 putative transporter; Provisional
Probab=98.78 E-value=1.4e-06 Score=86.63 Aligned_cols=158 Identities=9% Similarity=0.006 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 73 FIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (356)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~ 152 (356)
.++...++..+......+....|.+..+|. ....+.+...+.++..++.+++++++||+ |+|+++..+..+..+..++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~ 309 (460)
T PRK11462 232 IVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLA 309 (460)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHH
Confidence 333344444444433333334344434443 33344566677788888999999999998 9998877555444333333
Q ss_pred HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh-hhhHH
Q 018406 153 ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH-LDRFF 231 (356)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~-r~~~~ 231 (356)
+.+.. . .+...+++..++.|++.++..+...++++|..+.++-+...| -+..+
T Consensus 310 ~~~~~-------~-------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~ 363 (460)
T PRK11462 310 MFFVP-------M-------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISF 363 (460)
T ss_pred HHHhc-------h-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHH
Confidence 22211 0 123334444556677777777777888898887433222223 35556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 232 NFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 232 ~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
+.+.+...+|.++++.+.+++.+..|+
T Consensus 364 a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 364 AGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777788899999999888887765554
No 203
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.76 E-value=9.8e-07 Score=86.65 Aligned_cols=162 Identities=14% Similarity=0.054 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
...+.++..++...++....+.++.|.+..+|.+.............+..++.++..+|++++ |+|+++.++.++.+++
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVG 315 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHH
Confidence 345555566666666665666667777777888888888888888888888899999999998 9999999999999999
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh-hhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLD 228 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~-~~~r~ 228 (356)
.+++.+.. + .+..++++..++.++|.+...+...++++|..+-.+-+. +++-|
T Consensus 316 ~~~~~f~~------~--------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eG 369 (467)
T COG2211 316 YLLLYFTP------A--------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREG 369 (467)
T ss_pred HHHHHhhc------C--------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchh
Confidence 98888763 1 257888888899999999999999999999988433222 23456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
..++.+.+..=+|.+++..+.+++....|+
T Consensus 370 i~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 370 IVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 666777777777888887777777655443
No 204
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.74 E-value=1.7e-06 Score=83.96 Aligned_cols=178 Identities=8% Similarity=0.072 Sum_probs=136.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH---KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~---~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~ 143 (356)
+-|.+|..++........++.+....+.|++..+. .++...+...++-.+.-.+.-.+..++-+|+ |.|+.++++.
T Consensus 218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag 296 (412)
T PF01306_consen 218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAG 296 (412)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHH
Confidence 34456776666666666677676678888876554 2344567777788888888888899999998 9999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406 144 TIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (356)
Q Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~ 223 (356)
+++.+=.++++++. +.+.+.+...+.++-.+.......-|+++.||++.
T Consensus 297 ~i~~iRi~~~~~~~----------------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl--- 345 (412)
T PF01306_consen 297 VIMAIRIIGSGFAT----------------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL--- 345 (412)
T ss_dssp HHHHHHHHHHHT------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG---
T ss_pred HHHHHHHHHHhhhc----------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH---
Confidence 99888777766653 47778888899999999999999999999999766
Q ss_pred hhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406 224 KTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 224 ~~~r~~~~~~-~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (356)
.++...+ ++++..+|..+.+.++|++.++.|++..|++.+.+.++..++-.+.
T Consensus 346 ---sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~ 399 (412)
T PF01306_consen 346 ---SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT 399 (412)
T ss_dssp ---HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence 5566665 4678889999999999999999999999988777765554444443
No 205
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.74 E-value=4.7e-07 Score=87.88 Aligned_cols=73 Identities=10% Similarity=-0.086 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIF 142 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~ 142 (356)
+..|...+..++-.+++-...++++.+++++.|++.++.+.+.++..+...+..++.|.++||+ |.||-++..
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~ 79 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWF 79 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHH
Confidence 4556666666666666656777889999999999999999999999999999999999999998 966544433
No 206
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.71 E-value=1.8e-07 Score=89.19 Aligned_cols=139 Identities=10% Similarity=-0.008 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
.+.+.+..++.....+++..+++.|+++.+|++..+++....+..+...++.+++|+++||+ |||+.+..+..+..++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~ 305 (366)
T TIGR00886 227 TWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGA 305 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHH
Confidence 34455555555556667778899999999999999999999999999999999999999998 99988877776666655
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
.++.+... + ..+...+++..++.+++.|...+...++.++.+|. + ++..
T Consensus 306 ~~~~~~~~-----~-------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~------~g~~ 354 (366)
T TIGR00886 306 FLVVLGLV-----S-------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR-A------TGAV 354 (366)
T ss_pred HHHHhcCC-----C-------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhchh-h------cccH
Confidence 55544211 0 00244444555555566666666677778888873 3 7888
Q ss_pred HHHHHHHHHHH
Q 018406 231 FNFFYLSVTVG 241 (356)
Q Consensus 231 ~~~~~~~~~iG 241 (356)
.++.+...++|
T Consensus 355 ~g~~~~~~~~g 365 (366)
T TIGR00886 355 SGLVGAIGNLG 365 (366)
T ss_pred HHHHHHhccCC
Confidence 88877666654
No 207
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.67 E-value=5.8e-06 Score=80.07 Aligned_cols=138 Identities=12% Similarity=-0.063 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 018406 89 SVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDN 168 (356)
Q Consensus 89 ~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 168 (356)
....+.|+++.+|++..+.+........+..++.++.+++.||+ |++... +.....++.+.+...... .
T Consensus 227 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~----~---- 295 (394)
T PRK11652 227 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWF----G---- 295 (394)
T ss_pred HHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHh----c----
Confidence 34456677777999999988888888888888888899999987 743322 222222222222211100 0
Q ss_pred ccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 018406 169 CDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTL 248 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i 248 (356)
..+...++++.++.++|.+...+...++..|.+|. . ++...++.+...++|+.+++.+
T Consensus 296 ---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 296 ---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred ---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHH
Confidence 01244566667888888888888888888888873 3 6777888888888999999988
Q ss_pred HHHHHhhcchh
Q 018406 249 VVYIQMEHGWG 259 (356)
Q Consensus 249 ~~~i~~~~gw~ 259 (356)
.+++.....+.
T Consensus 354 ~~~~~~~~~~~ 364 (394)
T PRK11652 354 SAMLPQTGQFS 364 (394)
T ss_pred HHHccCCchHH
Confidence 88876554343
No 208
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.64 E-value=7e-06 Score=80.19 Aligned_cols=173 Identities=9% Similarity=0.010 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 018406 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~ 155 (356)
+..++.....-...++...|+++.-|.+....+...++..+.-...-.+.+++-.|+ |-++++.++.+.+++=..+.+.
T Consensus 214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~~l~a~ 292 (400)
T PF03825_consen 214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRWLLYAY 292 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444556777888755447777777777777777778888889999997 9999999999888876666655
Q ss_pred HhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHH
Q 018406 156 CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY 235 (356)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~ 235 (356)
... |. .........+..+.|+..+........++.+.+|++. +++..++|.
T Consensus 293 ~~~-----~~------------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~ 343 (400)
T PF03825_consen 293 FSD-----PW------------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYS 343 (400)
T ss_pred hcC-----Cc------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHH
Confidence 421 00 0011222334456899999999999999999999888 899999887
Q ss_pred H-HHHHHHHHHHHHHHHHHhhcchhH------HHHHHHHHHHHHHHHHHh
Q 018406 236 L-SVTVGAIVAFTLVVYIQMEHGWGS------AFGALAIAMGISNMLFFI 278 (356)
Q Consensus 236 ~-~~~iG~~i~p~i~~~i~~~~gw~~------~f~i~~~~~~i~~~~~~~ 278 (356)
. ...+|.++|.+++|++.+.+|-+. .|.+.+++.++..+++.+
T Consensus 344 ~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~ 393 (400)
T PF03825_consen 344 ALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI 393 (400)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 6 457899999999999999876432 334444444444444433
No 209
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.63 E-value=1.8e-06 Score=83.43 Aligned_cols=165 Identities=12% Similarity=0.025 Sum_probs=109.5
Q ss_pred cccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406 62 LSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI 141 (356)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~ 141 (356)
+.-++||--++...+..+.+.+.+.. .....+|....+| +...+.+...+|...+....+.+-|+.|++ |-|.++++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~-ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~ll 114 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQ-YAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLL 114 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchhee-ehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHH
Confidence 33345555544444444444443322 2335667777788 666777888889999999999999999998 99999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (356)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~ 221 (356)
++++.++|..+-.++.. |.+.+. --....+.|-.+.+...-.+...-+-.-+-+|++++
T Consensus 115 gt~ln~iGa~Ir~iss~-p~v~~~-------------------f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q- 173 (480)
T KOG2563|consen 115 GTVLNGIGAWIRLISSL-PFVPPL-------------------FRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ- 173 (480)
T ss_pred HHHHHHHHHHHhhhccC-cccccc-------------------chhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch-
Confidence 99999999988777642 222221 011255566666666655554443444456688777
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018406 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 255 (356)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~ 255 (356)
|..+..+--++..+|.+++.++...++.+
T Consensus 174 -----ra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 174 -----RAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred -----hhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 77777776667677777777666555443
No 210
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.61 E-value=7.2e-06 Score=74.63 Aligned_cols=151 Identities=12% Similarity=0.109 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~ 146 (356)
||-.+...+.++.+.. ..|.+.. .-..+++.+|++..+...+...-.++..++ ++.|.+.|++ |.+.++.+|.+..
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~-yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~ 76 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSA-YSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLG 76 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhh-hhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHH
Confidence 3444444444444432 3333333 345678899999999999999999998875 7889999998 9999999999999
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
.+|+.++.++..-.. +....+.+.+..++.+.|.+.............||. +
T Consensus 77 ~~GY~~~~l~~~~~i---------------------~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------ 128 (250)
T PF06813_consen 77 FVGYGLLWLAVSGRI---------------------PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------ 128 (250)
T ss_pred HHHHHHHHHHHhCcc---------------------CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------
Confidence 999999887753110 011355666656666666555555555556688985 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLV 249 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~ 249 (356)
||.+.++.--...+++++-..+-
T Consensus 129 RG~vvgilk~~~GLSaai~t~i~ 151 (250)
T PF06813_consen 129 RGTVVGILKGFFGLSAAIFTQIY 151 (250)
T ss_pred cCceehhhhHHHHhHHHHHHHHH
Confidence 77877776555555555443333
No 211
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=98.61 E-value=2.5e-06 Score=85.19 Aligned_cols=187 Identities=11% Similarity=0.095 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH----HHHHHHHHHHHHHHHHHHHH----HHHHhhcchhHHH--
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFAD----SSNAVNNFLGISQASSVLGG----FLADAYLGRYWTI-- 139 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~----a~~~~~~~~~~~~~~~~~~G----~lsD~~~GRr~~i-- 139 (356)
.++.+++...+-.+.+.-..+.++.|..+..+.+... .+++.+.-.+...+..++.. ++.+|..+.+...
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~ 352 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKF 352 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Confidence 3344444444444555455556677766654433211 34444444444444444433 4454421223333
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 018406 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (356)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~ 219 (356)
.+|.++..++.+.+++...... .....+.+++++..++.++|.....+...++.++..|++
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~-------------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~ 413 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFAD-------------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR 413 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-------------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 6778887777777665421100 000125788889999999999999999999999999987
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406 220 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (356)
Q Consensus 220 ~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (356)
. |+..++.++++..+|..+++.+.....+..+|...|...++++++..+++++..|
T Consensus 414 ~------~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 414 L------MGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7 9999999999999999999888887777667877777766666555555544444
No 212
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.58 E-value=1.5e-05 Score=77.80 Aligned_cols=116 Identities=11% Similarity=0.044 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 74 IFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (356)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~ 153 (356)
+....++..+.+-....+++.|+++ .|++..+.+.+.++..+...++++++|+++||+..+++.+.+..++..+.....
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455678888865 679999999999999999999999999999998445677766655555443333
Q ss_pred HHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 018406 154 TLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (356)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~ 218 (356)
.... +.+.+++..++..+......+...++.-+...+
T Consensus 86 ~~~~----------------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~ 122 (400)
T PF03825_consen 86 AFSS----------------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD 122 (400)
T ss_pred HHhc----------------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc
Confidence 3221 344555555666666666666665655555543
No 213
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.54 E-value=1.4e-06 Score=89.35 Aligned_cols=209 Identities=14% Similarity=0.130 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+.++.++....+......++....++-+.+.|+++..+.+.+.+.+.++..+..++..+..-|. =|-+.+-++.+++.+
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence 3444444444444333347777788889999999999999999999999999999999999986 666788899999999
Q ss_pred HHHHHHHHhhccc-c------------CCC----CCCccccccc----cCCCC--Ccchh-hHHHHHHHHHHHHHhhhch
Q 018406 149 GLTGITLCATMKV-F------------MPN----QDNCDRISQL----LGSCE--PAKSW-QMLYLYTVLYITGFGAAGI 204 (356)
Q Consensus 149 g~~~~~~~~~~~~-~------------~~~----~~~~~~~~~~----~~~~~--~~~~~-~~~~~~~~~~l~gig~g~~ 204 (356)
|.+++++--.+.. . .+. .+.|.+.+.. .+.|. ..++. -+.+++++.++.|+|...+
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 9988875311100 0 000 0001100000 01121 12222 3446778889999999999
Q ss_pred hhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------------------cc-hhHHHHHH
Q 018406 205 RPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME------------------HG-WGSAFGAL 265 (356)
Q Consensus 205 ~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~------------------~g-w~~~f~i~ 265 (356)
.+...+|+=|....++ -...+++.+....+|.++|.++++++.+. .| ||.+|.+.
T Consensus 255 ~tlGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~ 328 (735)
T KOG3626|consen 255 FTLGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLIC 328 (735)
T ss_pred ccCCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHH
Confidence 9999999888777665 78888999999999999999999876431 34 88899998
Q ss_pred HHHHHHHHHHHHhhccccc
Q 018406 266 AIAMGISNMLFFIGTPLYR 284 (356)
Q Consensus 266 ~~~~~i~~~~~~~~~~~~~ 284 (356)
+++.++..+.+++..+..+
T Consensus 329 g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 329 GALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHhCcccCc
Confidence 8888777777666555443
No 214
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.53 E-value=1.7e-05 Score=77.71 Aligned_cols=168 Identities=12% Similarity=0.049 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
.++...+..++....++++...+|.|+++.+|++..+.+.......++..++..+.+.+.++. ++++.+.....+..+|
T Consensus 219 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~ig 297 (413)
T PRK15403 219 LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLVG 297 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHH
Confidence 455555555666666677777788899989999999999888777778788777777765444 3434443334444444
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+++.+.... .++ ....++++.++.++|.+...++.....- ++...+ +++
T Consensus 298 ~~l~~~~~~~---~~~--------------------~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~-----~G~ 347 (413)
T PRK15403 298 LALLIVGNLL---WPH--------------------VWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLP-----KGT 347 (413)
T ss_pred HHHHHHHHHH---ccc--------------------cHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCC-----CcH
Confidence 4444332100 011 2333566777888888887777764332 222221 566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~ 269 (356)
..+.++.....+..+++.+.+++... +-.+.|....++.
T Consensus 348 a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~ 386 (413)
T PRK15403 348 VSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVA 386 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHH
Confidence 66777777777778888888887655 4445555544443
No 215
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=98.52 E-value=1.3e-08 Score=102.67 Aligned_cols=202 Identities=15% Similarity=0.100 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 018406 76 GNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~ 155 (356)
+..++. +..+++.....+.+.+.|+++..+++.+.+.+.++..+..++..++.+|. -|-+.+-++.+++.+|.+++++
T Consensus 10 ~~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~l 87 (539)
T PF03137_consen 10 LLGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFAL 87 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhc
Confidence 333444 66667777777788999999999999999999999999999999999985 6667777888889999888775
Q ss_pred Hhhccc-cCCC------------CCCcccc--c--cc-cCCCC---C-cchhhHHHHHHHHHHHHHhhhchhhhhhhhhh
Q 018406 156 CATMKV-FMPN------------QDNCDRI--S--QL-LGSCE---P-AKSWQMLYLYTVLYITGFGAAGIRPCVSSFGA 213 (356)
Q Consensus 156 ~~~~~~-~~~~------------~~~~~~~--~--~~-~~~~~---~-~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~a 213 (356)
-..+.. .... .+.|... + .. .+.|. . ....-+.+++++.++.|+|.....+...+|+=
T Consensus 88 Phf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 88 PHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred cHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeec
Confidence 322111 0000 0112000 0 00 00011 1 11223567888899999999999999999999
Q ss_pred ccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------cc-hhHHHHHHHHHHHH
Q 018406 214 DQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------------------HG-WGSAFGALAIAMGI 271 (356)
Q Consensus 214 d~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~---------------------~g-w~~~f~i~~~~~~i 271 (356)
|..++++ -....++++....+|.++|.++++...+. .| |+.+|.+.+++.++
T Consensus 168 Dnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l 241 (539)
T PF03137_consen 168 DNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL 241 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 9988777 67888899999999999999888754321 34 88888887777666
Q ss_pred HHHHHHhhcccccc
Q 018406 272 SNMLFFIGTPLYRH 285 (356)
Q Consensus 272 ~~~~~~~~~~~~~~ 285 (356)
..+.++...++.+.
T Consensus 242 ~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 242 SAIPLFFFPKKLPG 255 (539)
T ss_dssp --------------
T ss_pred HHHHHHcCCccCCC
Confidence 65555554444443
No 216
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.47 E-value=1.9e-05 Score=71.34 Aligned_cols=142 Identities=22% Similarity=0.272 Sum_probs=103.5
Q ss_pred HHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccc
Q 018406 96 MFYVMHKSF--ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRIS 173 (356)
Q Consensus 96 l~~~~~~s~--~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 173 (356)
+...++.+. ...+...+.+.+...++.++.|.++|++ |||+.++.+...+.++.+...+...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------------- 91 (338)
T COG0477 28 LLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--------------- 91 (338)
T ss_pred HHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc---------------
Confidence 334455554 4778888999999999999999999998 9998888887765555444443310
Q ss_pred cccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHH
Q 018406 174 QLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYI 252 (356)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-~~~iG~~i~p~i~~~i 252 (356)
.....+++.+++.|++.+...+...++++|.++. . .+++...+.... ...+|..+++.+.+++
T Consensus 92 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 92 -----------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred -----------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1467788888889999998899999999999997 1 237777777766 5777888888766665
Q ss_pred Hhh--cchhHHHHHHHHHH
Q 018406 253 QME--HGWGSAFGALAIAM 269 (356)
Q Consensus 253 ~~~--~gw~~~f~i~~~~~ 269 (356)
... .+|++.|.+.....
T Consensus 156 ~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 156 LGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHhcchHHHHHHHHHHH
Confidence 544 56888665554443
No 217
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.47 E-value=1.5e-05 Score=76.17 Aligned_cols=155 Identities=13% Similarity=0.076 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~ 150 (356)
.+...+..++-.-+-..+.++++.|+.+..|.+..+++..++.+.++.++|-.++-++..|+ -..+.+.+.+++.++-.
T Consensus 238 ~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~ 316 (422)
T COG0738 238 LRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLL 316 (422)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence 44555555555555555678899999988999999999999999999999999999999987 88888877776655444
Q ss_pred HHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhH
Q 018406 151 TGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF 230 (356)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~ 230 (356)
+...+.. +. .-+.+.+++|+..+.+.|.+.+..-+.++.+. ..++.
T Consensus 317 ~~~~l~~----------------------------g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~ 362 (422)
T COG0738 317 LAVALIG----------------------------GV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSG 362 (422)
T ss_pred HHHHHhc----------------------------Ch-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----cccce
Confidence 4444431 22 22334567888999999999999999999554 13333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 263 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~ 263 (356)
. -....+|+++-|.+.|++.|..|-...+.
T Consensus 363 ~---l~maivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 363 L---LVMAIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred e---eeeheecchHHHHHHHHHHHhhhhHHHHH
Confidence 3 23467899999999999999998766655
No 218
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.40 E-value=3.3e-06 Score=84.30 Aligned_cols=165 Identities=13% Similarity=0.124 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIFTTIY 146 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~i~~~~~l~ 146 (356)
.+|...+..++.....|++..+++.|+.+..|++..++.+....+.++..++.++.|+++||. ..+|..++....++
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 478888899999999999999999999986779999999999999999999999999999993 26777666665554
Q ss_pred H-HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 147 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
. +|.+.+.... .....+.+.+....+.+...++......+......
T Consensus 354 ~~~g~~~l~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~----- 400 (495)
T KOG2533|consen 354 AIIGAISLLAAA----------------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT----- 400 (495)
T ss_pred HHHHHHHHHhhc----------------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----
Confidence 4 3333333321 12222222233333333344444445555554433
Q ss_pred hhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHHHHHHHH
Q 018406 226 HLDRFFNFFYLSVTVGAIVA-FTLVVYIQMEHGWGSAFGALAI 267 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~-p~i~~~i~~~~gw~~~f~i~~~ 267 (356)
|+.+..+.+..+.+.+++++ ++..+.....++|.+.|++...
T Consensus 401 k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~ 443 (495)
T KOG2533|consen 401 KALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA 443 (495)
T ss_pred HhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence 35555555555554444444 4444455556788888854333
No 219
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.39 E-value=1.6e-05 Score=79.82 Aligned_cols=178 Identities=8% Similarity=0.062 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-------HHHHHHHHH
Q 018406 79 MAERMAYFGLSVNMVTFMFYVMHKSF----ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-------IAIFTTIYL 147 (356)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~~~~~s~----~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~-------i~~~~~l~~ 147 (356)
.+..+.+......++.|+++..+.+. .....+.+...+...+..++.|++.||+ |+|+. +.+|.++..
T Consensus 279 ~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~ 357 (489)
T PRK10207 279 VVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCS 357 (489)
T ss_pred HHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHH
Confidence 33344444454566777764333221 1223444444455666777788999998 98863 667777766
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++.+.++..... +... + ...+.++++...++.|+|.+...+...++.....|++. +
T Consensus 358 ~~~~~~~~~~~~--~~~~-------------~---~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~------~ 413 (489)
T PRK10207 358 LGFLTAAAAGMW--FADA-------------Q---GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL------M 413 (489)
T ss_pred HHHHHHHHHHHh--hcCC-------------C---CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH------H
Confidence 666544322100 0000 0 01245667777889999999999999999999999877 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh------h---c-chhHHHHHHHHHHHHHHHHHHhhcc
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQM------E---H-GWGSAFGALAIAMGISNMLFFIGTP 281 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~------~---~-gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (356)
+..++++++..++|+.++..+..+... . . .+.+.|...++..++..++++...+
T Consensus 414 g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~ 477 (489)
T PRK10207 414 GFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP 477 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877765421 0 1 2445666555555444444444333
No 220
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=9.5e-07 Score=83.98 Aligned_cols=180 Identities=14% Similarity=0.087 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGR-YWTIAIFTTIYLAG 149 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GR-r~~i~~~~~l~~~g 149 (356)
++...+.....++..-..-..++++..+.+.-+.-+.+....-..+.+.++..+.|.++||+ +. ||.+....++.. |
T Consensus 272 I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~-G 349 (464)
T KOG3764|consen 272 ILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATV-G 349 (464)
T ss_pred HhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHH-H
Confidence 34444444444444444556677777888885555888888888999999999999999998 83 244333333322 2
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
...... | .|. ++..+++-+..++++.+...+......+.+.+.++.++-..+|.
T Consensus 350 ~~~~~i--------P---~~~---------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGs 403 (464)
T KOG3764|consen 350 VSSGPI--------P---FAT---------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGS 403 (464)
T ss_pred HHhchh--------H---hhh---------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeee
Confidence 211111 0 121 46667777788888888888888888888887655432224899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
.+++...+..+|.++||.+++.+.+..|+.|.-.+.++..++-.-++.+
T Consensus 404 VyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l 452 (464)
T KOG3764|consen 404 VYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL 452 (464)
T ss_pred HHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988877777665444333333
No 221
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.35 E-value=3.8e-05 Score=73.81 Aligned_cols=142 Identities=13% Similarity=0.017 Sum_probs=98.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----hhHHHH-HHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 018406 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-----RYWTIA-IFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (356)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-----Rr~~i~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (356)
+..|++++....+..+.+..+... ..+..|+.||+. + ||..++ .+.+++..+..+...+..... ..
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~--~~---- 77 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLA--ES---- 77 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHc--cc----
Confidence 345788888888888887777666 478889999998 7 665555 455555555555443322111 10
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (356)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~ 249 (356)
.+....+.........++..+.|+|.+....+..++.+|..|+++ |++..++.+....+|..++..+.
T Consensus 78 ------~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~ 145 (403)
T PF03209_consen 78 ------GQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVF 145 (403)
T ss_pred ------ccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 000011111223344455577888888889999999999999887 99999999999999999999999
Q ss_pred HHHHhhcc
Q 018406 250 VYIQMEHG 257 (356)
Q Consensus 250 ~~i~~~~g 257 (356)
+.+.+.++
T Consensus 146 g~lL~~~s 153 (403)
T PF03209_consen 146 GRLLDPFS 153 (403)
T ss_pred HHHccccC
Confidence 98877665
No 222
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.35 E-value=7.5e-05 Score=71.81 Aligned_cols=154 Identities=15% Similarity=0.107 Sum_probs=122.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcc
Q 018406 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCD 170 (356)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (356)
.+-.|--+.||++..+.+.....+.++..++-.+.|++..+-.|.+++..+++.+..++..++.++...
T Consensus 230 iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~----------- 298 (403)
T PF03209_consen 230 ILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL----------- 298 (403)
T ss_pred HcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 455577788999999999999999999999999999988865588888889999888888777766531
Q ss_pred ccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018406 171 RISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (356)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~ 250 (356)
.+.+.+..+.+++|+|.|.......+..-|+..+.. -|.+++.|..+..+..+++..+++
T Consensus 299 --------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~Glg~~~GG 358 (403)
T PF03209_consen 299 --------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARGLGTFLGG 358 (403)
T ss_pred --------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 247788999999999999988888888888887665 788999999888888888888887
Q ss_pred HHHhh----------cchhHHHHHHHHHHHHHHHH
Q 018406 251 YIQME----------HGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 251 ~i~~~----------~gw~~~f~i~~~~~~i~~~~ 275 (356)
.+.|- .+|...|.+-++.+++++++
T Consensus 359 ~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 359 ALRDLVRALFGNSPALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 76542 23556666666655555444
No 223
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.33 E-value=4.3e-05 Score=76.88 Aligned_cols=174 Identities=14% Similarity=0.124 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCCh------HHHHHHHHHHHHHHHHHHHHH----HHHHHhhcchhHHHHHHHHHH
Q 018406 79 MAERMAYFGLSVNMVTFMFY--VMHKSF------ADSSNAVNNFLGISQASSVLG----GFLADAYLGRYWTIAIFTTIY 146 (356)
Q Consensus 79 ~~~~~~~~~~~~~l~~yl~~--~~~~s~------~~a~~~~~~~~~~~~~~~~~~----G~lsD~~~GRr~~i~~~~~l~ 146 (356)
++....+|.+...++.++.. ..+.+. ...+++.++-.+...++.++. +++.+|+ +..+.+.++.++.
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l~ 360 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVLC 360 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHHH
Confidence 34455666666666665442 111111 113344444444444444554 4555554 5667788888888
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhh
Q 018406 147 LAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
.++.+.+.+...... .|. ..+.+++++..++.++|.+...+...+++.+..|++.
T Consensus 361 ~l~f~~l~~~~~~~~----------------~~~---~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------ 415 (500)
T PRK09584 361 SGAFLVLPLGAKFAN----------------DAG---IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------ 415 (500)
T ss_pred HHHHHHHHHHHHhcC----------------CCC---ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------
Confidence 888877766532100 010 1245678888999999999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh----------hcchhHHHHHHHHHHHHHHHHHHh
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~----------~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
|++.++.++++..+|+.++..+.++... ..++.+.|...+++.++..++++.
T Consensus 416 rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 416 MGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887877777666543221 113566776666655444444433
No 224
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=98.33 E-value=3.2e-05 Score=76.42 Aligned_cols=155 Identities=15% Similarity=0.055 Sum_probs=112.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cc--hhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY--LG--RYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (356)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~--~G--Rr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (356)
...|+++++|+++++......+..+-..+ -++.|.++|.+ +| ||+-++++.++..++.+.++.... .
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---~----- 82 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---S----- 82 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---c-----
Confidence 44578889999999988777766666655 56678999997 45 455556666666555555444211 0
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (356)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~ 247 (356)
..+.....+..++..+|.+......-+...|....+.. .++...++.+....+|+.++..
T Consensus 83 ----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~ 142 (433)
T PF03092_consen 83 ----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSL 142 (433)
T ss_pred ----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHH
Confidence 01234455566778899999999999999999875542 2677888888899999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 248 LVVYIQMEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 248 i~~~i~~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
+.|++.+..++++.|.+.+++..+.++.
T Consensus 143 l~G~l~~~~~~~~~f~i~~~~~~l~~~~ 170 (433)
T PF03092_consen 143 LSGPLLDSFGPQGVFLISAALPLLMLIV 170 (433)
T ss_pred hhhhhhhcCCCeEEehHHHHHHHHHHHH
Confidence 9999999999998898877665555433
No 225
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.29 E-value=2e-05 Score=78.16 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhcCCChHH-HHHHHHHH----HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 018406 88 LSVNMVTFMFYVMHKSFAD-SSNAVNNF----LGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVF 162 (356)
Q Consensus 88 ~~~~l~~yl~~~~~~s~~~-a~~~~~~~----~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~ 162 (356)
...+...+....++.+... ........ .+...+.+++.|.++|+| |||..+.+..+..++..+.+.+.
T Consensus 40 ~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l~~~~~~~~------ 112 (463)
T KOG2816|consen 40 VMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTILPALCLLFQ------ 112 (463)
T ss_pred chhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHHhHHHHHHH------
Confidence 3355566665555544332 22233333 566778888999999998 99999999888888777666553
Q ss_pred CCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHH--hhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHH
Q 018406 163 MPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGF--GAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV 240 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gi--g~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~i 240 (356)
.+++++ +.++ +.+...+...++++|....+. |...+++.+.+...
T Consensus 113 ------------------------~~~~~~---~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~gll~~~~~~ 159 (463)
T KOG2816|consen 113 ------------------------GYWFFL---LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIGLLSGTFGA 159 (463)
T ss_pred ------------------------HHHHhh---hcccccchhhhhhhhhhheeeccchhH------HHHHHHHHHHHHHH
Confidence 222322 3332 234456777888899888776 88888888888888
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccc
Q 018406 241 GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPL 282 (356)
Q Consensus 241 G~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~ 282 (356)
+..++|.+++++....|....|.+..+..++.++..++..+.
T Consensus 160 ~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 160 GLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred HHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999889999888877776655554443
No 226
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.26 E-value=0.00015 Score=73.80 Aligned_cols=152 Identities=12% Similarity=0.101 Sum_probs=101.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-HHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFA---DSSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAI 141 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~---~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr-~~i~~ 141 (356)
+++|.+...++..++..+.+|.+....+......++-+.. ..+.....+.++..++.++.|.+.-++ ||. +.+++
T Consensus 307 ~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li~ 385 (599)
T PF06609_consen 307 KDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLIF 385 (599)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHHH
Confidence 3456777777888888888888888888887777776653 456677777888888888899999876 774 55567
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406 142 FTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (356)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~ 221 (356)
+.+++.++...++... ++ +....++..++.|+|.|+..........-..|+++
T Consensus 386 ~~~~~ta~~Gama~~~------~~--------------------n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~- 438 (599)
T PF06609_consen 386 GSVLMTAFCGAMAAVR------PD--------------------NKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED- 438 (599)
T ss_pred HHHHHHHHHHHHHHcc------CC--------------------CcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH-
Confidence 7666666555544332 21 22233455667788877766555444434445444
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018406 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (356)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~ 250 (356)
.+...++......+|+.++..+-.
T Consensus 439 -----ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 439 -----IGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred -----HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777777777777766543
No 227
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.21 E-value=7e-06 Score=81.91 Aligned_cols=136 Identities=10% Similarity=-0.152 Sum_probs=104.6
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccccccc
Q 018406 97 FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLL 176 (356)
Q Consensus 97 ~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (356)
++.+|+++...+.+.....++..++..+.+.+.+|+ +.|+++.++.++..++.+...+......... ..
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~---gi------- 348 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAF---GI------- 348 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccccc---CC-------
Confidence 457899999999999999999999999999999987 9999999999988877755432110000000 00
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018406 177 GSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~ 256 (356)
.....++...++.+++.+....+...++.+..|++. .++.++++....++|..+++.+++++.+..
T Consensus 349 --------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 349 --------SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred --------CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 012233344567788888888888999999999887 899999999999999999999999998887
Q ss_pred c
Q 018406 257 G 257 (356)
Q Consensus 257 g 257 (356)
|
T Consensus 415 g 415 (468)
T TIGR00788 415 G 415 (468)
T ss_pred C
Confidence 7
No 228
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.19 E-value=0.0002 Score=71.40 Aligned_cols=205 Identities=15% Similarity=-0.002 Sum_probs=135.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChH------H----HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFY-VMHKSFA------D----SSNAVNNFLGISQASSVLGGFLADAYL 133 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~-~~~~s~~------~----a~~~~~~~~~~~~~~~~~~G~lsD~~~ 133 (356)
+.-++.++.++.++++.-++++.+..+...|+.+ .++-++. + ..+...++.+...+.+++--++.+++
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~- 332 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW- 332 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 5557789999999999999999999888888874 4543221 1 12333445555556667777888887
Q ss_pred ch-hHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhh
Q 018406 134 GR-YWTIAIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSF 211 (356)
Q Consensus 134 GR-r~~i~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~ 211 (356)
|+ |++..++.++..++++...+....+. ..+. + ..+.--.++.......++...++|+..+.....-.++
T Consensus 333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~----~----~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal 404 (477)
T TIGR01301 333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYY----D----GDGESLPPPTGIKASALIVFAILGIPLAITYSIPFAL 404 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccc----c----ccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 95 67778888888888777665432100 0000 0 0000001111223555666678899999988888899
Q ss_pred hhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHhhccc
Q 018406 212 GADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGALAIAMGISNMLFFIGTPL 282 (356)
Q Consensus 212 ~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g--w~~~f~i~~~~~~i~~~~~~~~~~~ 282 (356)
+++..+++. ++.|..++++|.+..+...+..+..+.+.+..| -.+.+.+.++.++++.+..+...|+
T Consensus 405 ~s~~~~~~~----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 405 ASIRSSNLG----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHccccC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 999888533 237999999999999999988887777666555 3456777777777766665554443
No 229
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.14 E-value=0.00072 Score=67.59 Aligned_cols=136 Identities=15% Similarity=0.090 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhh
Q 018406 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186 (356)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (356)
+...++..+...+..|+.|.++|+- |+||.++ +.+++..+..+++.+.. ++ +
T Consensus 73 ~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~------~~--------------------~ 125 (477)
T PF11700_consen 73 LYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVS------PG--------------------Q 125 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhC------cc--------------------h
Confidence 5667778888888999999999987 7666555 44555555555555542 21 3
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh--------------------hhhhhHHHHHHHHHHHHHHHHH
Q 018406 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK--------------------THLDRFFNFFYLSVTVGAIVAF 246 (356)
Q Consensus 187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~--------------------~~r~~~~~~~~~~~~iG~~i~p 246 (356)
.....+..++..++.+.......+++.|..+++..... ..+++..+.-+...++|+.+..
T Consensus 126 ~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l 205 (477)
T PF11700_consen 126 WWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVAL 205 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 33333333444567777788889999999987762000 0127777777777888888877
Q ss_pred HHHHHHHhhc--------chhHHHHHHHHHHH
Q 018406 247 TLVVYIQMEH--------GWGSAFGALAIAMG 270 (356)
Q Consensus 247 ~i~~~i~~~~--------gw~~~f~i~~~~~~ 270 (356)
++.-.+.... ..|..+.+.++..+
T Consensus 206 ~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~ 237 (477)
T PF11700_consen 206 LISLLLVISPGSTASNTWAIRVAFLIVALWWL 237 (477)
T ss_pred HHHHHHHHcCCCccccchhhhHHHHHHHHHHH
Confidence 6654443222 23666666666543
No 230
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.06 E-value=0.00023 Score=71.87 Aligned_cols=91 Identities=9% Similarity=-0.023 Sum_probs=60.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+..++.....++..++..++.+....+....+.+..|.+... .....+......++.+++.++.||+ |||+.++.+..
T Consensus 290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~ 367 (513)
T KOG0254|consen 290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA 367 (513)
T ss_pred cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence 445666666666666665554433333333334455655433 4444445556666677778999998 99999999999
Q ss_pred HHHHHHHHHHHHh
Q 018406 145 IYLAGLTGITLCA 157 (356)
Q Consensus 145 l~~~g~~~~~~~~ 157 (356)
.+.++.++++...
T Consensus 368 ~m~~~~~~~~~~~ 380 (513)
T KOG0254|consen 368 GMSICLVILAVVG 380 (513)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888764
No 231
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.00 E-value=8.4e-05 Score=54.96 Aligned_cols=67 Identities=18% Similarity=0.002 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406 78 EMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIY 146 (356)
Q Consensus 78 ~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~ 146 (356)
.++...+.-.+..+++.|+. +.|++..+.+.+.++..+...++++++|+++||+ ||++.++....++
T Consensus 9 yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 9 YFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 33333444446667777876 5899999999999999999999999999999998 9888877665543
No 232
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.95 E-value=0.00048 Score=71.38 Aligned_cols=82 Identities=9% Similarity=0.076 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcc--hhHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLG--RYWTIAIFTTIY 146 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~G--Rr~~i~~~~~l~ 146 (356)
.++...+..++....++++..+++.|+++.+|++..+++.+.....+ +..++.+++|+++||+ + .|+.+.++.++.
T Consensus 331 ~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~~ 409 (633)
T TIGR00805 331 IYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICLS 409 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHHH
Confidence 56777888888899999999999999999999999999999887665 6789999999999997 7 456666666666
Q ss_pred HHHHHH
Q 018406 147 LAGLTG 152 (356)
Q Consensus 147 ~~g~~~ 152 (356)
+++.++
T Consensus 410 ~~~~~~ 415 (633)
T TIGR00805 410 TLSYLL 415 (633)
T ss_pred HHHHHH
Confidence 665544
No 233
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.88 E-value=0.00011 Score=72.75 Aligned_cols=148 Identities=9% Similarity=-0.055 Sum_probs=113.3
Q ss_pred HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccC
Q 018406 98 YVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLG 177 (356)
Q Consensus 98 ~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (356)
++++-.+..-+.....-..+-.+.-++.++|..++ |+-+++.+++.++.+=.+......
T Consensus 399 ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~L~-------------------- 457 (618)
T KOG3762|consen 399 EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSYLQ-------------------- 457 (618)
T ss_pred hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHHhc--------------------
Confidence 45554455555555556677777788889999998 999999999888887666665542
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 018406 178 SCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEH 256 (356)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-~~~iG~~i~p~i~~~i~~~~ 256 (356)
+.|+.+..-++.|+..+.++.++.+|+++..|++- +.++.++.+. .-.+|-.+|.+|+|.+...+
T Consensus 458 --------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f 523 (618)
T KOG3762|consen 458 --------NPWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGLGKGLGSLIGGFVVERF 523 (618)
T ss_pred --------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence 56777777799999999999999999999999887 6666666553 23566777888888888888
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhc
Q 018406 257 GWGSAFGALAIAMGISNMLFFIGT 280 (356)
Q Consensus 257 gw~~~f~i~~~~~~i~~~~~~~~~ 280 (356)
|-+..|++.++..++.++++....
T Consensus 524 g~~ttf~~~giAcl~~l~~~~~iq 547 (618)
T KOG3762|consen 524 GARTTFRIFGIACLVTLALFISIQ 547 (618)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888887777666655443
No 234
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.88 E-value=4.4e-08 Score=96.57 Aligned_cols=178 Identities=15% Similarity=0.054 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+.....+....+..+..+....+...++.+..+.+.. ........+...++.+++.++.||+ |||+.++++.++..+
T Consensus 252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~ 328 (451)
T PF00083_consen 252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI 328 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence 3444445444444444433334444445556666665 2222233455556777778999997 999999999888777
Q ss_pred HHHHHH-HHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhh-chhhhhhhhhhccCCCCChhhhhh
Q 018406 149 GLTGIT-LCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAA-GIRPCVSSFGADQFDERSKDYKTH 226 (356)
Q Consensus 149 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g-~~~~~~~~~~ad~f~~~~~~~~~~ 226 (356)
..+.+. .... .++ .++..+.. .++...+..++.+ +..+....+.+|.||++.
T Consensus 329 ~~~~~~~~~~~----~~~---------------~~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------ 382 (451)
T PF00083_consen 329 CSLILGIIFFL----GVS---------------SSSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------ 382 (451)
T ss_pred ccccccccccc----ccc---------------cccccccc-cceeeeeccccccccccccccccccccccccc------
Confidence 666554 1100 000 00000111 1111222212222 334555578899999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
|++..++.+....+++++++.+..++.+..+-...|.+.+++.++..++
T Consensus 383 R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 383 RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred cccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 8898988888888888888888777777666234455555544444443
No 235
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=97.88 E-value=1.8e-05 Score=76.72 Aligned_cols=177 Identities=15% Similarity=0.038 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--------HHHHHHHHHHH-HHHHHHHHHHhhcchhHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSN--------AVNNFLGISQA-SSVLGGFLADAYLGRYWTI 139 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~--------~~~~~~~~~~~-~~~~~G~lsD~~~GRr~~i 139 (356)
+.++-..+..|..-+++|+...+.-.-+ +.+|+.+.+... ...+...+..+ +..++.++.|++ ||++..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 5556666667777778887655544333 445554433222 12222222222 556677889997 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHH-HHHHHhhhchhhhhhhhhhccCCC
Q 018406 140 AIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGADQFDE 218 (356)
Q Consensus 140 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~gig~g~~~~~~~~~~ad~f~~ 218 (356)
+.+.+++.+..+.++...+. . .+...+++.. +..-++.-+..+......+|.||+
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~---------------------~---~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ---------------------L---ENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc---------------------c---cccCceeehHHHHHHHHhcCCCceeEEeehhhchH
Confidence 99999988877666653210 0 0111122222 223345555666777778999999
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHHHHHHHHHH
Q 018406 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-----EHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~-----~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
+. |+...++...+.-+|+.++.....++.+ ..|.++.|++.++++.++.++.+
T Consensus 438 rv------R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~ 495 (538)
T KOG0252|consen 438 RV------RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL 495 (538)
T ss_pred HH------hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE
Confidence 98 9999999999999999999999999998 67889999999888877665543
No 236
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.86 E-value=1.4e-06 Score=79.45 Aligned_cols=155 Identities=14% Similarity=0.183 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
+.++.++..+...+.+ ---..+.+++..+.+.+.++..++-++|..-..+.++++|++.||.+|-|+.-++-+.+..+|
T Consensus 45 ~lv~mc~lgfgsyfcy-d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~G 123 (459)
T KOG4686|consen 45 ALVFMCLLGFGSYFCY-DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLG 123 (459)
T ss_pred HHHHHHHhcccceeec-CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHH
Confidence 3444444444443332 223346667777777777788888889999999999999999999999887666666666667
Q ss_pred HHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhh
Q 018406 150 LTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDR 229 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~ 229 (356)
.+..+.-.- ....+++.++|++.|+|.-........+..-+|..++ ..-
T Consensus 124 qliFa~Ggi-------------------------~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~ 172 (459)
T KOG4686|consen 124 QLIFAAGGI-------------------------SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNF 172 (459)
T ss_pred HHHHHhchH-------------------------HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccc
Confidence 766654211 1257899999999999987777888899999999887 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018406 230 FFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (356)
Q Consensus 230 ~~~~~~~~~~iG~~i~p~i~~~i~~~~ 256 (356)
++++.....-+|+.+...+.+++.+..
T Consensus 173 vfGlqlSvAR~GstvNf~lm~~ly~~~ 199 (459)
T KOG4686|consen 173 VFGLQLSVARLGSTVNFLLMPFLYDTM 199 (459)
T ss_pred hhhHHHHHHHhhceeeeeecHHHHHHH
Confidence 999988888888887777777776654
No 237
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.83 E-value=0.0012 Score=55.73 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhh
Q 018406 107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186 (356)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (356)
.....++..+...+..++.+.+.+++ |.|++++++.+.+.+-...... + +
T Consensus 39 G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~--------~---------------------~ 88 (156)
T PF05978_consen 39 GYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY--------P---------------------N 88 (156)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh--------h---------------------h
Confidence 34455556666777778888888887 9999999999998865544322 1 3
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (356)
Q Consensus 187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~ 249 (356)
...++.+-++.|+|.+..+.....++.+...++. +++..+++......+..+|.++.
T Consensus 89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999998776554 55555555444445555554433
No 238
>PTZ00207 hypothetical protein; Provisional
Probab=97.74 E-value=0.00094 Score=68.24 Aligned_cols=171 Identities=12% Similarity=0.033 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcchhH---------
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVM-HKSFAD--SSNAVNNFLGISQASSVLGGFLADAYLGRYW--------- 137 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~-~~s~~~--a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~--------- 137 (356)
.+|+++...+|..-+...+..|+- ++-+.+ |.+... ..+.++++.++.++|-+.+|+++... -||+
T Consensus 354 d~Wll~~~~~cg~g~gl~~~~N~~-qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~-~~~~~~~r~prt~ 431 (591)
T PTZ00207 354 RLWCLLWSIFCCVGAHFVIIFNAR-FIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWS-QKRRAEDRVPITI 431 (591)
T ss_pred hHHHHHHHHHHhhCchheeeecHH-HHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHH-HhhccccccchhH
Confidence 578888888887666655555553 445567 663333 33378999999999999999998332 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCC
Q 018406 138 TIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 217 (356)
Q Consensus 138 ~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~ 217 (356)
.+.+..+ +.++.+++++.. | ...++++-++.|++.|...+...+...|+|.
T Consensus 432 ~l~~~~~-~~~~~lll~~~~------p----------------------~~~L~~~~~lvg~~~G~~~~~~~~i~selFg 482 (591)
T PTZ00207 432 ALFIPSV-CIITMLTLFLTL------P----------------------KAALPLPYFIAAFANGFMAATIALVTRTIFA 482 (591)
T ss_pred HHHHHHH-HHHHHHHHHHHC------C----------------------ccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc
Confidence 2223333 555555555542 1 1468999999999999999999999999999
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhh----------cc---hhHHHHHHHHHHHHHHHHHHh
Q 018406 218 ERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME----------HG---WGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 218 ~~~~~~~~~r~~~~~~~~~~~~iG~~i~-p~i~~~i~~~----------~g---w~~~f~i~~~~~~i~~~~~~~ 278 (356)
++ .+..+|...++.-+|+.+- -.+.|++.|. .| ++..|.+.+++.+++++.-..
T Consensus 483 -k~------~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 483 -KD------PAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred -cc------hHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence 66 7899998888888888765 4455666432 12 677888877776666555433
No 239
>PRK03612 spermidine synthase; Provisional
Probab=97.64 E-value=0.015 Score=58.82 Aligned_cols=149 Identities=12% Similarity=0.079 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHH-HHHHHHHHHh
Q 018406 80 AERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWT-IAIFTTIYL-AGLTGITLCA 157 (356)
Q Consensus 80 ~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~-i~~~~~l~~-~g~~~~~~~~ 157 (356)
+..++..+.-....-.+...+|.+....+.+++++.++..+|+.++++++++. -|+.. +.+...+.. +...++....
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~~~~ 103 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILYAAF 103 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444556667888999999999999999999999999887554 23222 111111111 1111111111
Q ss_pred hccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHH
Q 018406 158 TMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLS 237 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~ 237 (356)
.. .. .....++...++.++..|+..|.+..+..+... ++ .+...+-.|..
T Consensus 104 ~~---~~--------------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ 153 (521)
T PRK03612 104 AF---QG--------------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAA 153 (521)
T ss_pred HH---HH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhH
Confidence 00 00 011122233345566666665555554433222 11 34455666667
Q ss_pred HHHHHHHHHHHHHHHH-hhcchh
Q 018406 238 VTVGAIVAFTLVVYIQ-MEHGWG 259 (356)
Q Consensus 238 ~~iG~~i~p~i~~~i~-~~~gw~ 259 (356)
..+|+++|.++.+++. ...|-.
T Consensus 154 ntlGa~~G~l~~~~vLlp~lG~~ 176 (521)
T PRK03612 154 DYLGALVGGLAFPFLLLPRLGLI 176 (521)
T ss_pred HhHHHHHHHHHHHHHHHHhcchH
Confidence 7888888888887654 356643
No 240
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=97.62 E-value=7.8e-05 Score=72.34 Aligned_cols=166 Identities=13% Similarity=0.113 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchhHHHHHH-HH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAY---LGRYWTIAIF-TT 144 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~---~GRr~~i~~~-~~ 144 (356)
+.++.+..+.+...+++..=.++++.|++ .+|.+.+-.+.+-.+.-+...+.+++.|..|||. +||||.++.. .+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 56666666666666776555566777775 6888888877777777888888899999999987 7988766544 45
Q ss_pred HHHHHHHHHHHHhhccccC-CCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhh
Q 018406 145 IYLAGLTGITLCATMKVFM-PNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY 223 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~ 223 (356)
...++.+++..+..+..+. ++. -.+.+......++++..+.=+..-..+++.-++++|+...++++
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~------------~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~- 177 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNE------------RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKK- 177 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCc------------ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhh-
Confidence 5556666555543221110 110 01133356778888888888888888999999999999876632
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018406 224 KTHLDRFFNFFYLSVTVGAIVAFTLVVYI 252 (356)
Q Consensus 224 ~~~r~~~~~~~~~~~~iG~~i~p~i~~~i 252 (356)
.++.+++.+...+|+.+|...++|.
T Consensus 178 ----~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 178 ----TRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred ----hccchhHHHHHHhcceeeeeccccc
Confidence 2267777778888888887766643
No 241
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.60 E-value=0.0025 Score=61.67 Aligned_cols=128 Identities=14% Similarity=0.037 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCC---Ch----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHHHHHHHhhccc
Q 018406 90 VNMVTFMFYVMHK---SF----ADSSNAVNNFLGISQASSVLGGFLADAYLGRYW-TIAIFTTIYLAGLTGITLCATMKV 161 (356)
Q Consensus 90 ~~l~~yl~~~~~~---s~----~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~-~i~~~~~l~~~g~~~~~~~~~~~~ 161 (356)
..++.|+++..+. +. +-.+...++..+..++..|+-|-++|.. |+|| .+.+...+.++.+..+++...
T Consensus 36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~~--- 111 (438)
T COG2270 36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIPP--- 111 (438)
T ss_pred ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhCC---
Confidence 4578888877654 33 3346667778888888899999999998 8665 444555566666666665421
Q ss_pred cCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHH
Q 018406 162 FMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG 241 (356)
+..+....+...+..++..+......+++.+..++++ .++..+.-+-...+|
T Consensus 112 ----------------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylg 163 (438)
T COG2270 112 ----------------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLG 163 (438)
T ss_pred ----------------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCccccccccccccc
Confidence 1134555555677788888888999999999998776 566666655567777
Q ss_pred HHHHHHHH
Q 018406 242 AIVAFTLV 249 (356)
Q Consensus 242 ~~i~p~i~ 249 (356)
+.+..++.
T Consensus 164 s~i~li~~ 171 (438)
T COG2270 164 SVILLIFV 171 (438)
T ss_pred chHHHHHH
Confidence 77766554
No 242
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=97.59 E-value=0.00051 Score=64.73 Aligned_cols=84 Identities=10% Similarity=0.044 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Q 018406 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------- 255 (356)
Q Consensus 186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~---------- 255 (356)
++..++++.++.|.|.+...+...+++++..++++ +.+..++.+....+|+.++|++++.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~ 82 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVA 82 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhh
Confidence 68889999999999999999999999999998776 78888999999999999999999977632
Q ss_pred ------cchhHHHHHHHHHHHHHHHH
Q 018406 256 ------HGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 256 ------~gw~~~f~i~~~~~~i~~~~ 275 (356)
..|+++|.+.+++.++..++
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~~~i~ 108 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAVLAII 108 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888665554444433
No 243
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.49 E-value=0.013 Score=58.98 Aligned_cols=146 Identities=12% Similarity=0.094 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
+..+.+....+...+.+|++.-+ ...+|.+......+... .....-...+.+-|++ |||.....+.++..+
T Consensus 322 ~~~~~~~~~~~~~~~~y~gl~~~-----~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~-gR~~~~~~~~~~~~~ 392 (521)
T KOG0255|consen 322 YRTLYLLFIWFVFSLVYYGLSLN-----VSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEF-GRRPPLFLSLFLAGI 392 (521)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhh-----hhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 34444444444444555444332 33455544433333322 4444445557899997 999999999999998
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLD 228 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~ 228 (356)
+.+...+... . .......+...+..++.+........+.+|++|+.. |.
T Consensus 393 ~~~~~~~~~~-----~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~------r~ 441 (521)
T KOG0255|consen 393 GLLLFGWLPD-----D--------------------LGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVV------RN 441 (521)
T ss_pred HHHHHHHhhc-----c--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH------HH
Confidence 8888877532 0 010122222233333444445556888899999887 88
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406 229 RFFNFFYLSVTVGAIVAFTLVVYIQM 254 (356)
Q Consensus 229 ~~~~~~~~~~~iG~~i~p~i~~~i~~ 254 (356)
...+.......+|++++|.+......
T Consensus 442 ~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 442 TAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888899999999976654433
No 244
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.46 E-value=0.0017 Score=61.90 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=115.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFM-FYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAI-FTTI 145 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl-~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~-~~~l 145 (356)
...++.+++...+.....|....+...++ ...+|+++.+.+-+.+.-.++..+....-.+..|++.|.-+..+. +..+
T Consensus 259 ~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~ 338 (451)
T KOG2615|consen 259 FISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLL 338 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHH
Confidence 45778888888777777777666666666 467999999999888888888888888888888988555443333 3333
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
.+-..+++.... ....++++..+..+..+...+++..++....|...
T Consensus 339 ~vP~~llls~~~----------------------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q----- 385 (451)
T KOG2615|consen 339 IVPAFLLLSLAR----------------------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ----- 385 (451)
T ss_pred HHHHHHHHhccc----------------------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc-----
Confidence 333333333321 35678888888899888889999999999888877
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~~ 254 (356)
||...+++.....++=++||++.|++..
T Consensus 386 -rG~~~Gi~~Sl~alaRaiGPlv~g~i~~ 413 (451)
T KOG2615|consen 386 -RGTLNGIFRSLGALARAIGPLVSGVIFS 413 (451)
T ss_pred -chHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence 9999999999999999999999887754
No 245
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.43 E-value=0.0011 Score=64.44 Aligned_cols=184 Identities=13% Similarity=0.086 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-HHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRY-WTIAIFTTIYLA 148 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr-~~i~~~~~l~~~ 148 (356)
...+++....+....+|++.+.+-.- ...-|++...++.+..+..+++.++.++.|.+.||. ..+ .++++......+
T Consensus 267 ~F~il~~~ygi~~g~F~~l~~~l~~~-l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v 344 (480)
T KOG2563|consen 267 QFIILAICYGIGLGLFNSLSTLLNLA-LCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALV 344 (480)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhhhc-cccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHH
Confidence 44555555566666666665544322 234577778899999999999999999999999998 554 455555555555
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhcc-CCCCChhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQ-FDERSKDYKTHL 227 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~-f~~~~~~~~~~r 227 (356)
+...+..... . .| ..+.++....+.|++..+..|.-..+..|. ||..+
T Consensus 345 ~~~~l~~~t~----~----~~----------------~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E------- 393 (480)
T KOG2563|consen 345 GTLMLLTCTL----F----LG----------------DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE------- 393 (480)
T ss_pred HHHHHHHhhc----c----CC----------------ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------
Confidence 5322222111 0 11 234455555677777777777777777776 55444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc---hhH-HHHHHHHHHHHHHHHHHhhccccccc
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGS-AFGALAIAMGISNMLFFIGTPLYRHR 286 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g---w~~-~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (356)
+.-.+..++...+-+.+-.++.+...+..+ |.+ .-+.......+.+++..+.++.|++.
T Consensus 394 ~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~ 456 (480)
T KOG2563|consen 394 GTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRL 456 (480)
T ss_pred cccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhH
Confidence 333344444455555555556666666555 333 32333344444555555555555443
No 246
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.37 E-value=0.048 Score=54.39 Aligned_cols=170 Identities=9% Similarity=-0.003 Sum_probs=96.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS-----FADSSNAVNNFLGISQAS-SVLGGFLADAYLGRYWTIA 140 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s-----~~~a~~~~~~~~~~~~~~-~~~~G~lsD~~~GRr~~i~ 140 (356)
-++.++...+.-+|..+.++.+-. +.+.+..+ ......+.+...+...+. .++-+++++|+ +|++.+.
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~ 78 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY 78 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence 355666666766776666653332 34445442 234455555544444444 77889999998 9999888
Q ss_pred HHHHHHHHHHHHHHHHhhc-c-ccCCCCCCccccccccCCCCCcchh-------hHHHHHHHHHHHHHhhhchhh-hhhh
Q 018406 141 IFTTIYLAGLTGITLCATM-K-VFMPNQDNCDRISQLLGSCEPAKSW-------QMLYLYTVLYITGFGAAGIRP-CVSS 210 (356)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~gig~g~~~~-~~~~ 210 (356)
+....+++...++++.... + .++|+ ..|++ .....+.+. +.+...+..+...+-.....+ ...+
T Consensus 79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~-~~~~~-----~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~ 152 (472)
T TIGR00769 79 TVISPFLGFFALFAFVIYPLSDLLHPT-ALADK-----LLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWG 152 (472)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhcCCc-HHHHH-----HHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666555544210 0 01111 00000 000000000 011111111122222233333 6788
Q ss_pred hhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406 211 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (356)
Q Consensus 211 ~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~ 254 (356)
+..|.+..++ -.+++..+..+.++|..+++.+..++.+
T Consensus 153 fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 153 FANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999877 7899999999999999999998888763
No 247
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=97.34 E-value=0.026 Score=56.69 Aligned_cols=120 Identities=13% Similarity=-0.025 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchh-H-----H-HHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCC
Q 018406 107 SSNAVNNFLGISQASSVLGGFLADAYLGRY-W-----T-IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (356)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr-~-----~-i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (356)
+++..++-.+...+..|+.+++=.+. +|| + . +.++.++..++.+.+.+...... +
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l-~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~--~--------------- 371 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKES-VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSA--M--------------- 371 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHH-hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC--C---------------
Confidence 45555665555555666666665554 332 1 1 55677777777766665442110 0
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHH
Q 018406 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVYI 252 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~-~iG~~i~p~i~~~i 252 (356)
....+..++++..++.++|.-+..|...+++++..|++. ++..++.+++.. .+|..++..+.++.
T Consensus 372 --~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~------~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 372 --YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGV------TGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred --CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 001356778888889999999999999999999999887 899999887643 56666665555544
No 248
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=97.22 E-value=0.034 Score=54.18 Aligned_cols=153 Identities=8% Similarity=0.007 Sum_probs=97.9
Q ss_pred HHHHHHHHHh-cCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCC
Q 018406 90 VNMVTFMFYV-MHKSFADSS-NAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQD 167 (356)
Q Consensus 90 ~~l~~yl~~~-~~~s~~~a~-~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 167 (356)
.++..|+.+. .|++..+.. .+.-++.-......++...++|.. |-|++++++.+..++...++.+..
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence 4578899887 899988765 455556666666777788999986 999999999888877776666542
Q ss_pred CccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406 168 NCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (356)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~ 247 (356)
+...+-+.-++.|++.+. .....+++=-..|+++ .-++.+.-..+..+|..++.+
T Consensus 93 ------------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~ 147 (412)
T PF01770_consen 93 ------------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSL 147 (412)
T ss_pred ------------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777555 3444454444444333 555555544455555555554
Q ss_pred HHHHHHh--hcchhHHHHHHHHHHHHHHHHHHh
Q 018406 248 LVVYIQM--EHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 248 i~~~i~~--~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
++-.+.. ..++.....+..+...+++++.++
T Consensus 148 lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f 180 (412)
T PF01770_consen 148 LGQLLVSFGGVSYFQLNYISLASVSLALLIALF 180 (412)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333 334566666766666666555444
No 249
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=96.98 E-value=0.0083 Score=59.68 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=113.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFG-LSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
..|..+.+....+.....-.+ ....+..|+...++++..+.+...+.......++.++..++--+.+|-++++.+|.+.
T Consensus 238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~ 317 (463)
T KOG2816|consen 238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLS 317 (463)
T ss_pred CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Confidence 334445544444443333322 2214456788899999999999999999999999988885444445999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 146 YLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
..+...+.+++. +.++++.+.++.++. +...+...++.+-+...++
T Consensus 318 ~~~~~~~~af~~----------------------------~~w~~~~~~v~~~~~-~~~~pa~~s~~s~~v~~~e----- 363 (463)
T KOG2816|consen 318 EFLQLLLFAFAT----------------------------ETWMMFAAGVVVALA-GIVFPAIRAFASILVSPEE----- 363 (463)
T ss_pred HHHHHHHHHHhc----------------------------cchhhhHHHHHHHhh-cchhHHHHhHHHhhccccc-----
Confidence 999998888864 467777777666554 6667888888888888887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018406 226 HLDRFFNFFYLSVTVGAIVAFTLVVYIQ 253 (356)
Q Consensus 226 ~r~~~~~~~~~~~~iG~~i~p~i~~~i~ 253 (356)
+|..+++......+.+.++|.+-+.+.
T Consensus 364 -~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 364 -QGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred -ccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 899999999888888888888776554
No 250
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.93 E-value=0.0019 Score=58.97 Aligned_cols=97 Identities=18% Similarity=0.078 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCc
Q 018406 90 VNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNC 169 (356)
Q Consensus 90 ~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 169 (356)
.....|+.+.+|+...+.+....+..+...+...+.|-|+|+- |||+... .+.+.+++..+.-+
T Consensus 57 gPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracv----tycitYiLsCiTKh----------- 120 (454)
T KOG4332|consen 57 GPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACV----TYCITYILSCITKH----------- 120 (454)
T ss_pred CceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-cccccee----eehHHHHHHHHhhc-----------
Confidence 3445577788999999999888888888888888889999997 9999654 44455555555432
Q ss_pred cccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhh-hhhccC
Q 018406 170 DRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSS-FGADQF 216 (356)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~-~~ad~f 216 (356)
+.++-.+.++|++-|+..+...+..-+ +++|.-
T Consensus 121 --------------SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 121 --------------SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred --------------CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 124667889999999998887666544 345544
No 251
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=96.66 E-value=0.031 Score=41.93 Aligned_cols=65 Identities=8% Similarity=-0.073 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 018406 91 NMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (356)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~ 156 (356)
.+...++++.+++..+++++.+.-.+++.+|.+...++.++. .+++.+..+.++..+..+.+++.
T Consensus 13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567889999999999999999999999999999999986 88888999988888888877765
No 252
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.58 E-value=0.00055 Score=69.46 Aligned_cols=182 Identities=10% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH-HHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNF-LGISQASSVLGGFLADAY-LGRYWTIAIFTTIY 146 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~-~~~~~~~~~~~G~lsD~~-~GRr~~i~~~~~l~ 146 (356)
+...++.+...++.+...++.++++-|++++|+.++..++.+.... ..+..+|.+++|++..|+ ++.|..+....++.
T Consensus 305 p~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~ 384 (539)
T PF03137_consen 305 PVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVS 384 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHH
Confidence 3466777777888888889999999999999999999999888765 447788999999999998 44555555555444
Q ss_pred HHHHHHHHHH-----hhccc--cCCC-------------CCCcccc------ccccCCCCCcchhhHHHHHHHHHHHHHh
Q 018406 147 LAGLTGITLC-----ATMKV--FMPN-------------QDNCDRI------SQLLGSCEPAKSWQMLYLYTVLYITGFG 200 (356)
Q Consensus 147 ~~g~~~~~~~-----~~~~~--~~~~-------------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~gig 200 (356)
++..+..... .+.+. +... ...|+.. .+....|+..-..+...+++..++..+.
T Consensus 385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~ 464 (539)
T PF03137_consen 385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF 464 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence 4433331110 00000 0000 0012110 0011224444122345555555554444
Q ss_pred hhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Q 018406 201 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEH 256 (356)
Q Consensus 201 ~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~-~~~iG~~i~p~i~~~i~~~~ 256 (356)
.+....+.....--..++++ |+-+.++..+ ...+|..-+|++.|++.|..
T Consensus 465 ~~~~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 465 TFMSQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ---------------------------------------------------------
T ss_pred HHhcccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 44444444444446667666 7777777654 45678888999999988864
No 253
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.36 E-value=0.072 Score=55.41 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNN-FLGISQASSVLGGFLADAY-LGRYWTIAIFTTIYL 147 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~-~~~~~~~~~~~~G~lsD~~-~GRr~~i~~~~~l~~ 147 (356)
.....++...++.+.+.|+.++++-|+.++||.+...+..++.. ...+..+|.+++|++..|+ +.-|.+..+..+..+
T Consensus 393 if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~ 472 (735)
T KOG3626|consen 393 IFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSV 472 (735)
T ss_pred hHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999988855 5667778999999999998 445555555444444
Q ss_pred HHH
Q 018406 148 AGL 150 (356)
Q Consensus 148 ~g~ 150 (356)
+.+
T Consensus 473 l~l 475 (735)
T KOG3626|consen 473 LSL 475 (735)
T ss_pred HHH
Confidence 433
No 254
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.28 E-value=0.31 Score=48.12 Aligned_cols=151 Identities=8% Similarity=-0.124 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+...+...+-.++.-++...++.|+... |++....+..=+...+....+.++..++.+|+ |-.++=+++.....+.+.
T Consensus 261 flas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~ 338 (432)
T PF06963_consen 261 FLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLA 338 (432)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHH
Confidence 3333333334444445566688899876 99999999999999999999999999999998 998888888777666555
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
+...+...+... .+..+...++.+.++.=+|.=+..-+..-++-|..|+++ |+.+.
T Consensus 339 ~~v~~~~~~~~~------------------~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~ 394 (432)
T PF06963_consen 339 LCVVSFWAPGSP------------------FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVS 394 (432)
T ss_pred HHHHHHhcCCCC------------------chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHH
Confidence 555443221100 012345666666677667777777788888888888776 88888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018406 232 NFFYLSVTVGAIVAFTL 248 (356)
Q Consensus 232 ~~~~~~~~iG~~i~p~i 248 (356)
+.-+-..++...+...+
T Consensus 395 gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 395 GVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88777777766666544
No 255
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.52 Score=46.77 Aligned_cols=117 Identities=20% Similarity=0.099 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHH
Q 018406 113 NFLGISQASSVLGGFLADAY--LGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (356)
Q Consensus 113 ~~~~~~~~~~~~~G~lsD~~--~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (356)
....+..++.++.+.+++|. +||++++.++.++..++.++.-+.. |...|. . .+..-+...+......
T Consensus 287 ~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~dap~----~----~t~~~~~~~~~~~~~~ 356 (461)
T KOG3098|consen 287 GIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PNDAPL----R----PTDSPPLLFTPSYYLA 356 (461)
T ss_pred HHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--cccCCC----C----CCcccccccccchhHH
Confidence 34455555667777887665 6999999999999888877766543 211110 0 0001111112233344
Q ss_pred HHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH
Q 018406 191 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF 246 (356)
Q Consensus 191 ~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p 246 (356)
.+.-++.|++-+........++++.+|++ +..+++++-+-..+++.++.
T Consensus 357 ~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~ 405 (461)
T KOG3098|consen 357 LIIGFLLGFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAF 405 (461)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHh
Confidence 44456789999999999999999999544 45555555554445554433
No 256
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.12 E-value=0.091 Score=52.05 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHH
Q 018406 111 VNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYL 190 (356)
Q Consensus 111 ~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (356)
..+......+.+++++.+-|.. |.|+.+.++...+....+..... |...+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~-----------------------------N~y~~ 105 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP-----------------------------NSYYL 105 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc-----------------------------chHHH
Confidence 6667777888899999999997 99999999999988776655542 46778
Q ss_pred HHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406 191 YTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (356)
Q Consensus 191 ~~~~~l~gig~g~~~~~~~~~~ad~f~~~~ 220 (356)
+.+-.++|+|.+..+.-...++.+....+.
T Consensus 106 yfssallG~Gaallw~GqG~ylt~~st~~t 135 (461)
T KOG3098|consen 106 YFSSALLGFGAALLWTGQGGYLTSNSTRET 135 (461)
T ss_pred HHHHHHhhhhHHheecccceehhhcCChhh
Confidence 889999999999989888899999888665
No 257
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=96.09 E-value=0.22 Score=49.42 Aligned_cols=89 Identities=15% Similarity=0.196 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHhhcch
Q 018406 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY------IQMEHGW 258 (356)
Q Consensus 185 ~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~------i~~~~gw 258 (356)
.+.++++.+.+++++|.=++.+...++.+...|++- .+..++.|.++...|..++-.+.+. ..+....
T Consensus 392 ~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~ 465 (498)
T COG3104 392 VSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIE 465 (498)
T ss_pred cCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhh
Confidence 368888999999999999999999999999999766 7888888888888887777665552 2223344
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 018406 259 GSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 259 ~~~f~i~~~~~~i~~~~~~~~ 279 (356)
...|+..+...++..+.++..
T Consensus 466 ~~~F~~~g~v~i~~~~~~~~~ 486 (498)
T COG3104 466 GRVFGTIGVVAIVIGILLLLL 486 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHh
Confidence 556666665544444443333
No 258
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=95.90 E-value=0.29 Score=50.98 Aligned_cols=185 Identities=11% Similarity=-0.092 Sum_probs=129.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCC
Q 018406 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSC 179 (356)
Q Consensus 100 ~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (356)
.+...........++.....+.+++....+|..-|+...+....+.++++.+...+... ..
T Consensus 15 ~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a------------------ 75 (654)
T TIGR00926 15 LNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GA------------------ 75 (654)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cc------------------
Confidence 34444567788899999999999999999999977778888888888888887776542 00
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-h
Q 018406 180 EPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-W 258 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w 258 (356)
.+.........+..+.++++.+|..++-+.+.+++++..+ ...+....++|++..+.+.+ |.+++..+..... +
T Consensus 76 -~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~ 150 (654)
T TIGR00926 76 -IPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGD 150 (654)
T ss_pred -CcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 0111223445567778889999999999999999998654 33345799999998887665 4556666665544 3
Q ss_pred hH------HHH-HHHHHHHHHHHHHHhhcccccccCCCCChhHHHHHHHHHHHhccc
Q 018406 259 GS------AFG-ALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRH 308 (356)
Q Consensus 259 ~~------~f~-i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~ 308 (356)
.. +|. ..++.+++.++.++.....++..++.+.....+.++........+
T Consensus 151 ~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~ 207 (654)
T TIGR00926 151 VGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALR 207 (654)
T ss_pred hcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHH
Confidence 21 233 455556666666777777777777776665667777766665443
No 259
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.76 E-value=2.3 Score=42.01 Aligned_cols=187 Identities=9% Similarity=-0.128 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+.+....++.+...=......+.|+...+.-+.--.+..-.+-.+...+..+..|.+.||. -|.+++..+.++--+...
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHH
Confidence 4444444554444333333455666666544444444444555666667777778899998 899988877665333222
Q ss_pred H----HHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 152 G----ITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 152 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
. +......+.. ... ........+.+..++..+..=+..+...+.--|+...-..++...+
T Consensus 84 ~s~~~~~~l~~~~~~---------------~~~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~L 147 (432)
T PF06963_consen 84 ASCALFLLLLSYPSS---------------SSQ-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGAL 147 (432)
T ss_pred HHHHHHHHHHhCCcc---------------ccc-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhH
Confidence 2 2211110000 000 0011122222222222222222223333333444332111111224
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 275 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~ 275 (356)
.+.....-=.=.+.-.++|++.|.+.+..+...+..+.++..++++.+
T Consensus 148 a~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 148 ARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 444433322234457789999999988888877777666666655544
No 260
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=95.45 E-value=0.21 Score=49.13 Aligned_cols=138 Identities=9% Similarity=-0.027 Sum_probs=74.8
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCcccc
Q 018406 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL---GRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRI 172 (356)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~---GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~ 172 (356)
..+-.|++..+......+...++.+|.++||.++|++- -|-.+..+..+....+........... +. .+.
T Consensus 274 ~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~---~~--~~~-- 346 (493)
T KOG1330|consen 274 SYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLF---PA--FTS-- 346 (493)
T ss_pred HHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHH---Hh--hhh--
Confidence 33445667777778888899999999999999999941 111222333222222221111100000 00 000
Q ss_pred ccccCCCCCcchhhHHHHHHHHHHHHHhh-hchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHHHH
Q 018406 173 SQLLGSCEPAKSWQMLYLYTVLYITGFGA-AGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVV 250 (356)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~gig~-g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~-~iG~~i~p~i~~ 250 (356)
.... +.+.++++|+-. -...+.......+..|+.. |..++.+..... .+|.+-+|.+.|
T Consensus 347 ------------~s~~-~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~------Rt~a~a~~~~~~h~fgd~~~p~ivG 407 (493)
T KOG1330|consen 347 ------------SSMI-FGLILFLVGETISWFNWATNNPIFLEVVPPSR------RTTAYALDTVFEHIFGDAASPYIVG 407 (493)
T ss_pred ------------HHHH-HHHHHHHHHHHHHhcccccccceeeEecCccc------ccHHHHHHHHHHHHhccCCCcceeh
Confidence 1111 222223333222 2233445556678888776 888888876544 556666676888
Q ss_pred HHHhhc-chh
Q 018406 251 YIQMEH-GWG 259 (356)
Q Consensus 251 ~i~~~~-gw~ 259 (356)
.+.++. ||+
T Consensus 408 ilsd~l~g~~ 417 (493)
T KOG1330|consen 408 ILSDKLRGYK 417 (493)
T ss_pred hHHHHhhCCC
Confidence 888875 666
No 261
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=95.30 E-value=0.017 Score=57.54 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHHHHHHHHHH
Q 018406 87 GLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-IFTTIYLAGLTGITL 155 (356)
Q Consensus 87 ~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~-~~~~l~~~g~~~~~~ 155 (356)
.+...+..|+ +.+|+++.+.+.++..--+..+++.|++|+++||| -+++.++ .+.+..+...+++.+
T Consensus 29 ~l~pll~vy~-kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~-r~~r~lllgsl~~~v~a~fll~f 96 (618)
T KOG3762|consen 29 SLFPLLAVYF-KQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRY-RKRRPLLLGSLLLSVTATFLLVF 96 (618)
T ss_pred ccchHHHHHH-HHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHheee
Confidence 3555667776 47999999999999999999999999999999999 5555444 445555555555443
No 262
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=94.67 E-value=0.1 Score=51.91 Aligned_cols=197 Identities=13% Similarity=0.079 Sum_probs=115.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcch---hHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGIS--QASSVLGGFLADAYLGR---YWTIA 140 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~--~~~~~~~G~lsD~~~GR---r~~i~ 140 (356)
-.|+..+.++...+...+.+..+.+-........++++..++....+...... ....+...+..-+. |+ |..++
T Consensus 259 ~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l-~~i~~r~~~~ 337 (488)
T KOG2325|consen 259 LDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRL-GKIDKRRIIL 337 (488)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHh-hhhccceeee
Confidence 45777788888888888887766665666666677877766544443322222 22233334444443 43 44444
Q ss_pred HHHHH-HHHHHHHHHHHh--hcccc-CCC-CCCccccccccCC-CCCcchhhHHHHHHHH-HHHHHhhhchhhhhhhhhh
Q 018406 141 IFTTI-YLAGLTGITLCA--TMKVF-MPN-QDNCDRISQLLGS-CEPAKSWQMLYLYTVL-YITGFGAAGIRPCVSSFGA 213 (356)
Q Consensus 141 ~~~~l-~~~g~~~~~~~~--~~~~~-~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~l~gig~g~~~~~~~~~~a 213 (356)
.+.++ +....+.+.-.. ..|.. .+. .-.|.. ..++ |......+...++++. ++.|++.-.+.....+..+
T Consensus 338 ~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~---~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlyS 414 (488)
T KOG2325|consen 338 LGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDF---EEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYS 414 (488)
T ss_pred ehHHHHHHhhheeeeeccccccccccccccccCcCc---ccchhhccCcccChhhheeehhheeccccccccchHHHHHH
Confidence 44333 322222111000 00000 000 001110 0111 6666666666666665 5567777777788889999
Q ss_pred ccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 214 DQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (356)
Q Consensus 214 d~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~ 272 (356)
++..+++ .+...+++.....++..++|++...+-...|.++.+.+.....++.
T Consensus 415 kiLgp~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~ 467 (488)
T KOG2325|consen 415 KILGPRD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVV 467 (488)
T ss_pred HHhCCcc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHH
Confidence 9999988 6777788888888999999999988888888877766655554333
No 263
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=94.33 E-value=1.2 Score=43.01 Aligned_cols=159 Identities=14% Similarity=0.118 Sum_probs=89.4
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcchhHH
Q 018406 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLAD-----AYLGRYWT 138 (356)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD-----~~~GRr~~ 138 (356)
.++..+.++++++..+....-. |....+| ++-+.-|.|-...+.....+ .=+-.-++++++-| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP-~lL~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIP-LLLQAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhhhH-HHhcCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 4566677888888888876664 5666444 44445566655433322221 11234567788888 76 99987
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 018406 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (356)
Q Consensus 139 i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~ 218 (356)
-++=+ -+.+|.++..++...+..... .....+...+....+++-++.+.-.-.+-+..-.+..+
T Consensus 101 Wvvp~-q~llG~~mllLs~~v~~~~g~---------------ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~ 164 (510)
T KOG3574|consen 101 WVVPC-QYLLGLFMLLLSYLVDRGLGG---------------NGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSR 164 (510)
T ss_pred eeeeh-HHHHHHHHHHHhhCCCccccc---------------CCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCH
Confidence 55432 244555555555432221110 01111233333344556666666656666666666665
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 018406 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV 249 (356)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~ 249 (356)
++ .|-+.....++.+.|.+++..+.
T Consensus 165 e~------lgyaST~q~Vg~~~GyfL~~~if 189 (510)
T KOG3574|consen 165 EN------LGYASTCQSVGQTAGYFLGNVVF 189 (510)
T ss_pred hh------cCchhHHHHHHHhhhHHhhccee
Confidence 55 66666677777888888877654
No 264
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=94.00 E-value=0.64 Score=45.36 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (356)
Q Consensus 186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~ 254 (356)
+.+.+++..+..|+..|+...+....+.|..++++ |.-.++.-.++-.+|..++.+++-++..
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 35556666677899889999999999999887665 7788888777777887777766655544
No 265
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=93.71 E-value=8.4 Score=38.59 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=53.0
Q ss_pred HHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 272 (356)
Q Consensus 197 ~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~ 272 (356)
.++.........-..+.+++|++. .|+.+++-++...++.+.+..++.+.+....||..+..+.-+++++.
T Consensus 276 y~~~~nlve~~~k~~v~~~~p~~~-----~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit 346 (472)
T TIGR00769 276 YGISINLVEVTWKSKLKAQYPSPN-----EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLT 346 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 445555566677788889998655 48999999888888888666666789999999998777655555443
No 266
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=93.13 E-value=8.1 Score=36.72 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=83.9
Q ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406 61 DLSKTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (356)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~ 140 (356)
++.++..-|.++.+....+....++-|. .++......++|.. ..++ ........+++.+.+..+ +|-|+++.
T Consensus 21 ~r~~~~~~knv~i~s~~fl~~f~a~~gl-~nlq~~vn~~lg~~--sl~~----~y~~l~~s~m~~~~~Ir~-~g~K~tm~ 92 (390)
T KOG3097|consen 21 RRKRLGILKNVLILSIAFLLTFTAYLGL-QNLQTSVNYDLGTV--SLGA----LYLSLIDSSMFMPLLIRF-LGTKWTMV 92 (390)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHhcCcccc--hhhh----hhHHHHHHHHHHHHHHHH-HhhHHHHH
Confidence 3444555667666666655555555443 34555443333321 1111 122233344444466665 49999998
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (356)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~ 220 (356)
++...+......... | .+..++.+-.+.|+|.+...+.-.+|+++.-....
T Consensus 93 lav~~Y~lyiA~Nl~--------p---------------------r~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya 143 (390)
T KOG3097|consen 93 LAVFPYALYIAANLE--------P---------------------RYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYA 143 (390)
T ss_pred HHHHHHHHHHHhhcc--------h---------------------hHHhhccHHHhhccccccccccCcceecHHHHHHH
Confidence 887776543322111 1 24556667778899988888777777766554322
Q ss_pred hh-----h----hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018406 221 KD-----Y----KTHLDRFFNFFYLSVTVGAIVAFTLVV 250 (356)
Q Consensus 221 ~~-----~----~~~r~~~~~~~~~~~~iG~~i~p~i~~ 250 (356)
.. + .+-.+-++.+++...-+|..++..+..
T Consensus 144 ~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~ 182 (390)
T KOG3097|consen 144 NQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMT 182 (390)
T ss_pred HhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 111345566666666677666665553
No 267
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=92.50 E-value=3.3 Score=40.45 Aligned_cols=78 Identities=9% Similarity=0.044 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHH
Q 018406 110 AVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLY 189 (356)
Q Consensus 110 ~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (356)
++..-.+-..+.-++.-++.+|. --..=+.+..++.++|+++.+++. +.++
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v-~y~~Ri~~~~~l~~~g~l~va~~~----------------------------~v~~ 114 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRV-PYWIRILICVALSAAGMLLVAFSP----------------------------SVWV 114 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhc-cchHHHHHHHHHHHHHHhheeecc----------------------------chhH
Confidence 33334445555556666777775 322223345556667777666542 4566
Q ss_pred HHHHHHHHHHhhhchhhhhhhhhhccCC
Q 018406 190 LYTVLYITGFGAAGIRPCVSSFGADQFD 217 (356)
Q Consensus 190 ~~~~~~l~gig~g~~~~~~~~~~ad~f~ 217 (356)
-+++.++.+++.|.......++.+ .++
T Consensus 115 ~l~Gv~las~ssg~GE~tfL~lt~-~y~ 141 (402)
T PF02487_consen 115 RLLGVVLASLSSGLGEVTFLSLTH-FYG 141 (402)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHH-hcC
Confidence 678888888888887777666543 555
No 268
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=92.03 E-value=13 Score=37.53 Aligned_cols=169 Identities=13% Similarity=0.094 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVM---HKSFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIAI 141 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~---~~s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~GRr~~i~~ 141 (356)
.-++.++.+.+..++..+.+..+- . +.+.+ .........+-....+ .+.+..++-.++++++ +|.++..+
T Consensus 21 ~E~~k~~~l~~m~f~i~f~y~~lR-~----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~ 94 (491)
T PF03219_consen 21 SELKKFLPLALMFFFILFNYTILR-D----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYI 94 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 345666777776666655543221 1 11111 1133333333333333 4455567788999998 99998887
Q ss_pred HHHHHHHHHHHHHHHhhccc---cCCCCCCccccccccCCCCCcchhh-------HHHHHHHHHHHH--Hhhhchhhhhh
Q 018406 142 FTTIYLAGLTGITLCATMKV---FMPNQDNCDRISQLLGSCEPAKSWQ-------MLYLYTVLYITG--FGAAGIRPCVS 209 (356)
Q Consensus 142 ~~~l~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~g--ig~g~~~~~~~ 209 (356)
....++....+.++... |. ++|+ ..+++ .... .+.+.. .|.+. ..++.+ .|.-...-...
T Consensus 95 ~~~~F~~fF~~f~~vly-P~~~~lhp~-~~~~~----~~~~-~~~~~~~~i~~~~~Wt~s-lfYv~aElwgsvvlSlLFW 166 (491)
T PF03219_consen 95 IIIPFLGFFALFAFVLY-PNRDILHPD-AFADK----LLAI-LPPGFKGFIAMFRNWTFS-LFYVMAELWGSVVLSLLFW 166 (491)
T ss_pred HHHHHHHHHHHHHHHHh-hchhhcCCC-HHHHH----hhhh-ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 77766666555554431 11 1221 01100 0000 000000 01111 111111 12111222457
Q ss_pred hhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406 210 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (356)
Q Consensus 210 ~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~ 254 (356)
++..|.+..++ ..+++..+..+.|+|..++..+..++.+
T Consensus 167 ~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 167 GFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78889998777 7899999999999999999888887776
No 269
>PRK10263 DNA translocase FtsK; Provisional
Probab=91.48 E-value=4 Score=45.34 Aligned_cols=31 Identities=16% Similarity=0.022 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 240 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 270 (356)
Q Consensus 240 iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~ 270 (356)
.|+++|.++..++...+|...+.++..++++
T Consensus 142 gGGIIG~lLs~lL~~LfG~vGa~LILLlllL 172 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSGGTIALLCVWA 172 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4666777666666666665333333333333
No 270
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=90.73 E-value=1.2 Score=43.90 Aligned_cols=127 Identities=11% Similarity=-0.075 Sum_probs=71.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhh-cc-cc-CCCCCCccccccccCC
Q 018406 102 KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCAT-MK-VF-MPNQDNCDRISQLLGS 178 (356)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~ 178 (356)
++....+.+..+..++..++..+...+--++ .-|+++.++.++.++..+...+... .. .+ .++
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~-~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d------------- 317 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNW-SWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPD------------- 317 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCC-------------
Confidence 7777766666666666666666554432233 4566666666555544332221100 00 00 000
Q ss_pred CCCcchhhHHHHHHH-HHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018406 179 CEPAKSWQMLYLYTV-LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 257 (356)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g 257 (356)
. +++.+ -++..+..+...-+...+.+++-|+.. -+..+++.....|+|..++..++.++.+..+
T Consensus 318 --------~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~------Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 318 --------Q-WFALGDTILEEVIGMIAFMPSLVLAARLCPKGS------EGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred --------e-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 12222 234444445555566678899999876 6777877777788888888877777765443
No 271
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=90.70 E-value=20 Score=36.09 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=50.8
Q ss_pred HHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 197 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 197 ~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~ 274 (356)
.++..-.....--..+.+++|+.. .+..+++-++...++-+.+-.++++.+....||..+..+.-+++++..+
T Consensus 292 Ygi~inLvE~~wK~~lk~~~~~~~-----~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~lit~~ 364 (491)
T PF03219_consen 292 YGISINLVEVVWKSQLKQLYPDPN-----DYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVILITGL 364 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHH
Confidence 445555566667777788888765 3788888877666666666667778899999999887775454444433
No 272
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=89.92 E-value=23 Score=35.51 Aligned_cols=171 Identities=11% Similarity=0.051 Sum_probs=96.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHK---SFADSSNAVNNFLG-ISQASSVLGGFLADAYLGRYWTIA 140 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~---s~~~a~~~~~~~~~-~~~~~~~~~G~lsD~~~GRr~~i~ 140 (356)
|.-|+.++.+.+..+|..+.++.+-. +...+.+ .+.....+-....+ .+.+..++-+++.+++ -|.+++.
T Consensus 23 r~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~ 96 (509)
T COG3202 23 RYELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFY 96 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHH
Confidence 34577777777777776666542222 2333333 34445555566666 6777888899999997 8888887
Q ss_pred HHHHHHHHHHHHHHHHhhccc---cCCCCCCccccccccCCCCCcch--h-----hHHHHHHHHHHHH--Hhhhchhhhh
Q 018406 141 IFTTIYLAGLTGITLCATMKV---FMPNQDNCDRISQLLGSCEPAKS--W-----QMLYLYTVLYITG--FGAAGIRPCV 208 (356)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~l~g--ig~g~~~~~~ 208 (356)
+-...+....+++++... |. ++|+. ... ++.....|.. + +.|. +...++.+ .|.=...-..
T Consensus 97 ~~~~~F~~fF~LFa~Vi~-P~~~~~hp~~-~~~----~~~~~~~p~~l~~~ili~~~Ws-~s~~Yi~aELWgslV~S~lF 169 (509)
T COG3202 97 IILGFFLGFFALFAFVIY-PYKDILHPDP-EFS----RDLFADLPMFLKWFILIVGEWS-YSLFYIMAELWGSLVLSLLF 169 (509)
T ss_pred HHHHHHHHHHHHHHHHHh-ccccccCCCH-HHH----HHHHhhCCccceeeeEeecchH-HHHHHHHHHHHHHHHHHHHH
Confidence 777777666666665442 11 00100 000 0000000100 0 0011 11122222 1211122245
Q ss_pred hhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406 209 SSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (356)
Q Consensus 209 ~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~ 254 (356)
..+.-|++..++ -.+++..++...|++..++..+..++..
T Consensus 170 w~faNeitt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 170 WQFANEITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHhhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567778888776 7899999999999999998888887765
No 273
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=88.94 E-value=24 Score=34.47 Aligned_cols=32 Identities=9% Similarity=0.199 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 018406 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (356)
Q Consensus 187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~ 219 (356)
....++..++.+++.|..++......++ ||.+
T Consensus 117 f~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ 148 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSE 148 (406)
T ss_pred HHHHHHHHHHHhhhhhhhccchhhhhhc-CCHH
Confidence 3444445566777777777777776544 5543
No 274
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.22 E-value=2.5 Score=31.84 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcccccccC
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL 287 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~ 287 (356)
..+=-++++...+|+++|.+ .|+.++.++|. .++.++..++.+++.+.-.|.|++++
T Consensus 22 kkaEr~~q~ilti~aiVg~i-~Gf~~Qqls~t--vy~vg~~~v~t~li~LPpwP~y~rn~ 78 (101)
T KOG4112|consen 22 KKAERFQQLILTIGAIVGFI-YGFAQQQLSVT--VYIVGAGFVFTLLITLPPWPWYRRNP 78 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHhcCCCchhhhcCc
Confidence 34445677788888888874 55666666663 34444444555555555556666543
No 275
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=85.14 E-value=15 Score=37.04 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhh
Q 018406 107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186 (356)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (356)
-|.+-.+..+.+.+..++.|++-.++ .|.--+.++.+..+-+.+++..+. +.+
T Consensus 300 NG~veA~~tllga~~a~~ag~~~~~w-~~~~~l~l~v~s~~~~gll~~m~~--------------------------t~~ 352 (511)
T TIGR00806 300 NGAVDAASTLLGAITSFIAGFVNIRW-ARWSKLLIAVVSAIQAGLVFWMSQ--------------------------SHD 352 (511)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCc-hhhHHHHHHHHHHHHHHHhhhhhc--------------------------ccc
Confidence 35556667778888899999987665 554334444433333332222211 136
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH
Q 018406 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (356)
Q Consensus 187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~ 236 (356)
++..|++.++.+.......+....-+|.....+. .+-.|++..+
T Consensus 353 Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~------~aLvFGiNtf 396 (511)
T TIGR00806 353 IWVLYVTYVLFRGIYQFLVPIATFQIASSLSKEL------CALVFGINTF 396 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------eEEEEecHHH
Confidence 8999999999888888888888888888877665 7888877544
No 276
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=84.75 E-value=7.4 Score=36.10 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcch
Q 018406 107 SSNAVNNFLGISQASSVLGGFLADAYLGR--YWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (356)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GR--r~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (356)
-+.+.+.+.++..+|+-+...+..+- .. ...+.+..++.++...+..+... ..|. .
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~---vsP~------------------k 341 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSS---VSPS------------------K 341 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhc---cCCC------------------c
Confidence 36777778887777777766665543 11 23444554444433333222211 1111 1
Q ss_pred hhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--h--hcchhH
Q 018406 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--M--EHGWGS 260 (356)
Q Consensus 185 ~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~--~--~~gw~~ 260 (356)
.+...-+++..++-.+.|...|.+.-+=....|++. |++.++++-.-.++-.-++. |.. + ..+-|.
T Consensus 342 es~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvL----ynlh~~~~p~~tr~ 411 (454)
T KOG4332|consen 342 ESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVL----YNLHVDAFPTTTRN 411 (454)
T ss_pred CCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhh----eecccccCccccch
Confidence 123333566666667778888888888777788777 89999998877666433221 111 1 134567
Q ss_pred HHHHHHHHHHHHHH
Q 018406 261 AFGALAIAMGISNM 274 (356)
Q Consensus 261 ~f~i~~~~~~i~~~ 274 (356)
.|.++.+.+.++.+
T Consensus 412 mf~icS~~~~~a~i 425 (454)
T KOG4332|consen 412 MFGICSAFLFVASI 425 (454)
T ss_pred hhhhhHHHHHHHHH
Confidence 78887777665543
No 277
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=84.19 E-value=17 Score=28.06 Aligned_cols=45 Identities=18% Similarity=0.080 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 018406 107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTG 152 (356)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~ 152 (356)
.+.......++..+++.+.+.+.|.. |.+..+.+...+.+++.+.
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFL-GWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhccc-chHHHHHHHHHHHHHHHHH
Confidence 34555667788889999999999987 8877777666555544433
No 278
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=83.93 E-value=42 Score=32.25 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=38.8
Q ss_pred HHHHHhhhchhhhhhhhhhccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHHHH
Q 018406 195 YITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTL 248 (356)
Q Consensus 195 ~l~gig~g~~~~~~~~~~ad~f~~~~~~-~~~~r~~~~~~~~~~~~iG~~i~p~i 248 (356)
.++|+..+...+..+.++-.+.|.-+++ +....|..++.+..+..+|+.+.+.+
T Consensus 247 l~LG~~qslFE~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l 301 (354)
T PF05631_consen 247 LLLGLIQSLFEGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRL 301 (354)
T ss_pred HHHHHHHHHHHHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888754432 12347888888888888888776543
No 279
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=83.79 E-value=13 Score=36.79 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (356)
Q Consensus 187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~ 247 (356)
-+..++..++.|+..|-..+....+..+..++++ |..+..+..++.++|-.+|..
T Consensus 372 d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~aG~~~~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 372 DAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVAGALMVIFLLVGLALGAV 426 (437)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4556666788999999888888888888877544 444444444455555555543
No 280
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=83.48 E-value=49 Score=32.75 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 018406 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (356)
Q Consensus 186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~ 218 (356)
.....++..++.|++.+...+...++.+ .||+
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~ 136 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPS 136 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCH
Confidence 3445555566788888888887777655 6774
No 281
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=83.43 E-value=3.3 Score=40.98 Aligned_cols=90 Identities=9% Similarity=-0.139 Sum_probs=60.2
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC-h----HH-----------HHHHHHHHHHHHHHHHHHHH
Q 018406 64 KTGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-MHKS-F----AD-----------SSNAVNNFLGISQASSVLGG 126 (356)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-~~~s-~----~~-----------a~~~~~~~~~~~~~~~~~~G 126 (356)
.+..+|..+.+++..++..++++.+.-+.+.++-++ ++=+ . ++ -.+-+.++.....+.+.+.-
T Consensus 274 ~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~~ 353 (498)
T KOG0637|consen 274 LKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLVE 353 (498)
T ss_pred HhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 355667889999999999999887777766665433 2211 1 11 14566677788888899999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 127 FLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (356)
Q Consensus 127 ~lsD~~~GRr~~i~~~~~l~~~g~~~~~ 154 (356)
++.+++ |-|+.++.+...+.++..+..
T Consensus 354 ~l~~~~-g~r~~y~~~~~~f~~~~~~~g 380 (498)
T KOG0637|consen 354 KLSRKF-GTRKRYWGGVNAFGLATGLAG 380 (498)
T ss_pred HHHHhc-CcceEEeehhHHHHHHHHHHh
Confidence 999998 966666655554444444333
No 282
>COG3619 Predicted membrane protein [Function unknown]
Probab=80.61 E-value=42 Score=30.05 Aligned_cols=27 Identities=4% Similarity=-0.167 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 108 SNAVNNFLGISQASSVLGGFLADAYLGR 135 (356)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GR 135 (356)
........+...++..++..++-+. .|
T Consensus 58 a~~~~~pii~Fv~Gv~~~~~~~r~~-~~ 84 (226)
T COG3619 58 AVLLLLPILAFVLGVAAAELISRRA-TR 84 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence 3444445555555555555555543 54
No 283
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=80.55 E-value=47 Score=32.62 Aligned_cols=97 Identities=11% Similarity=0.019 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhh
Q 018406 107 SSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQ 186 (356)
Q Consensus 107 a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (356)
-|.+-.+..+.+.++.+..|++..++ .+..-+.++.+..+.+..++..+. +.+
T Consensus 287 NG~VeA~~tllgA~~al~~g~v~~~w-~~~~~l~l~~~S~l~a~~L~lm~~--------------------------t~~ 339 (412)
T PF01770_consen 287 NGAVEAASTLLGAIAALLAGYVKVNW-DRWGELALGVFSLLQAGLLFLMSF--------------------------TGN 339 (412)
T ss_pred chHHHHHHHHHHHHHHHHHhHhhcch-HHHHHHHHHHHHHHHHHHHHHHHH--------------------------hhH
Confidence 46777778888888999999997665 775555545444443333333221 126
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH
Q 018406 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (356)
Q Consensus 187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~ 236 (356)
++..+++.++.+...-...+....-+|.....+. .+-.|++..+
T Consensus 340 Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~------yaLVFGiNtf 383 (412)
T PF01770_consen 340 IWVCYAGYIIFRSLYMFLITIASFQIAKNLSEER------YALVFGINTF 383 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------eeeeeeeHHH
Confidence 8888888877776666666666666666666544 7777766433
No 284
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.54 E-value=11 Score=29.47 Aligned_cols=26 Identities=19% Similarity=0.073 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406 121 SSVLGGFLADAYLGRYWTIAIFTTIY 146 (356)
Q Consensus 121 ~~~~~G~lsD~~~GRr~~i~~~~~l~ 146 (356)
.....|||.|+|+|-.+.-+|..++.
T Consensus 58 VGa~iG~llD~~agTsPwglIv~lll 83 (116)
T COG5336 58 VGAGIGWLLDKFAGTSPWGLIVFLLL 83 (116)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34455899999999887555544443
No 285
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=75.84 E-value=95 Score=31.46 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=41.0
Q ss_pred HHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406 193 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (356)
Q Consensus 193 ~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~ 254 (356)
.-++..+..-.....+.+|-+...++.. -|+.+.+.|...|+|+---..+.-+++|
T Consensus 411 ~~~l~sf~stvmFVai~AFharISDP~I------GGTYMTLLNTvSNLGGtWP~~~vL~lVD 466 (544)
T PF13000_consen 411 QHVLSSFMSTVMFVAIMAFHARISDPAI------GGTYMTLLNTVSNLGGTWPRTFVLWLVD 466 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccc------chHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence 3345556666677888899999999887 7888999999999988655555444443
No 286
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=73.64 E-value=56 Score=34.57 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=21.2
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 018406 129 ADAYLGRYWTIAIFTTIYLAGLTGITLC 156 (356)
Q Consensus 129 sD~~~GRr~~i~~~~~l~~~g~~~~~~~ 156 (356)
-|++-||.+-++++.+++.++.+...+.
T Consensus 50 ~~~~~~R~~~l~it~~~f~i~sl~v~ll 77 (701)
T TIGR01667 50 DDRLTGRLKNLIITLSCFSIASFLVQLL 77 (701)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556678888889988888887776654
No 287
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=72.19 E-value=58 Score=34.45 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=32.1
Q ss_pred HHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhc
Q 018406 129 ADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAG 203 (356)
Q Consensus 129 sD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~ 203 (356)
-|++-||.+-++++.+++.++.+...+... ..+++..++++.+++.++
T Consensus 50 d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~---------------------------~p~lf~~~l~~~tf~~~m 97 (704)
T TIGR01666 50 DDRLTGRLKNVIFTLICFSIASFSVELLFG---------------------------KPWLFAVGLTVSTFGFIM 97 (704)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------------------CcHHHHHHHHHHHHHHHH
Confidence 345567888888888888877776655431 356667777777666554
No 288
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=71.47 E-value=12 Score=27.40 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhccccccc
Q 018406 231 FNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR 286 (356)
Q Consensus 231 ~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~ 286 (356)
-.+++....++++++. +.||+.+.+ +..+++.++..++++++.+.-.+.|.++
T Consensus 10 e~l~~~il~~~~iisf-i~Gy~~q~~--~~~~~~~~~g~~~~~lv~vP~Wp~y~r~ 62 (76)
T PF06645_consen 10 EKLMQYILIISAIISF-IVGYITQSF--SYTFYIYGAGVVLTLLVVVPPWPFYNRH 62 (76)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHhheeCCcHhhcCC
Confidence 3445555666666665 567776654 3455555555555555555444555443
No 289
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=70.16 E-value=25 Score=29.46 Aligned_cols=48 Identities=13% Similarity=0.120 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH
Q 018406 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV 244 (356)
Q Consensus 188 ~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i 244 (356)
..+.+..++.|+|. .+..+..++-..+++. -|++.+|-.+-.|++-+.
T Consensus 98 ~~~~~S~~~Fg~gl---lGisYGilSaSWD~~r------~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 98 AVLLVSLVFFGLGL---LGISYGILSASWDPER------EGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHHHHHHHHHHHHH---HhhhhhhcccccCCCC------CCCcccHHHHHHhHHHHH
Confidence 33444444444443 3355666667777765 699999988888887553
No 290
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=69.09 E-value=1.7 Score=40.79 Aligned_cols=34 Identities=6% Similarity=0.201 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (356)
Q Consensus 187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~ 220 (356)
-+.+++..++.|+.+|-..+....+..+..++++
T Consensus 248 d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e 281 (309)
T PF01733_consen 248 DAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPEE 281 (309)
T ss_dssp -------------------HHHH-----------
T ss_pred hHHHHHHHHHHHHccchhhhceeeeCCCcCCHHH
Confidence 3555666788899999888888888888888554
No 291
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=67.80 E-value=21 Score=36.72 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 018406 184 SWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 256 (356)
Q Consensus 184 ~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~ 256 (356)
.-+..+++--.+++|++-........-|.=+|+|+.- |+...+++.+...+|..++.++...+....
T Consensus 455 ~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sM------kS~~~al~l~t~a~G~~lss~Lv~~v~~~t 521 (571)
T KOG1237|consen 455 PMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESM------KSVATALWLLTVAVGNYLSSVLVSLVQFST 521 (571)
T ss_pred CeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467777888899999999988888889999999887 899999999999999999988886655443
No 292
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=63.36 E-value=1.7e+02 Score=29.48 Aligned_cols=201 Identities=15% Similarity=0.112 Sum_probs=101.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-----
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTI----- 139 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i----- 139 (356)
-+.|....+-+..++...+...-+.- -+.++. .+..++.-....+.++..++.+++|.+.-.+ ++++-.
T Consensus 145 ~~~Ws~s~~Yi~aELWgslV~S~lFw----~faNei-tt~~eakRFy~lf~l~~ni~lllsg~~~~~~-~k~~~~~~~~~ 218 (509)
T COG3202 145 VGEWSYSLFYIMAELWGSLVLSLLFW----QFANEI-TTIEEAKRFYPLFGLGANISLLLSGEVTSWL-SKHRDALASEF 218 (509)
T ss_pred ecchHHHHHHHHHHHHHHHHHHHHHH----HHHHHh-hhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-hhchhhHhHHH
Confidence 46677777777777776554321111 112221 2557778888888888888888888877765 542211
Q ss_pred ------HHHHHHHHHHHHHHHHHhhccc-cCCCCCCccccccccCCCCCcch---hhHH-------HHHHHH--HHHHHh
Q 018406 140 ------AIFTTIYLAGLTGITLCATMKV-FMPNQDNCDRISQLLGSCEPAKS---WQML-------YLYTVL--YITGFG 200 (356)
Q Consensus 140 ------~~~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~--~l~gig 200 (356)
.+..++.+.+.+.+.+...+.- ..+....... ..++.....++- .... +..++. +..|++
T Consensus 219 ~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~-~~~kk~~~k~k~~~~~s~k~i~~SkyL~~ial~vl~Y~v~ 297 (509)
T COG3202 219 KDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLR-AKKKKKKKKLKLGLIESFKMILRSKYLGAIALLVLAYGVS 297 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHH-HhcccccccccCcHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 1111111222222221110000 0000000000 000000010000 0111 111122 233455
Q ss_pred hhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 201 AAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVG-AIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 201 ~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG-~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~ 277 (356)
.-...+.--+-+.+.+|... .++.+++-++....+- ..+...+++-+....||-++-.++-++++++.++++
T Consensus 298 inLvE~~wKs~ik~~~~~~~-----~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~AlitPiv~litg~lFF 370 (509)
T COG3202 298 INLVEGVWKSGIKELYPTTN-----EYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGALITPLVMLITGVLFF 370 (509)
T ss_pred HHHHHHHHHHhHHHhcCChh-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 55566666677788888766 2677777776555544 444555667788889998888887777777655554
No 293
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=58.04 E-value=54 Score=21.96 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406 113 NFLGISQASSVLGGFLADAYLGRYWTIAIFT 143 (356)
Q Consensus 113 ~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~ 143 (356)
....+..+.....|+..|+++|..+...+..
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g 38 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIG 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence 3444555666777888999889855444333
No 294
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.83 E-value=1.2e+02 Score=30.85 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=21.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018406 102 KSFADSSNAVNNFLGISQASSVLGGFLADAY 132 (356)
Q Consensus 102 ~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~ 132 (356)
++++.-+.+.+...+...++.+++|+.+-|+
T Consensus 356 lSPs~RGsLmT~~~~l~v~~G~~agY~s~rl 386 (628)
T KOG1278|consen 356 LSPSSRGSLMTAMVLLFVFMGFVAGYVSARL 386 (628)
T ss_pred CCccccccHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4666667777777777777777777777665
No 295
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=57.81 E-value=30 Score=33.82 Aligned_cols=108 Identities=11% Similarity=-0.020 Sum_probs=59.5
Q ss_pred HHHHHHHHhcCCC---hHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 018406 91 NMVTFMFYVMHKS---FADSSNAVNN-FLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQ 166 (356)
Q Consensus 91 ~l~~yl~~~~~~s---~~~a~~~~~~-~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~ 166 (356)
..|.+..+..+-. .--+...+.+ +++.-.+|.++..++-+. +||...+ ..++-.+...++.++...| +.
T Consensus 265 iFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i-~v~lR~lfiPlF~~cn~~~-~~--- 337 (406)
T KOG1479|consen 265 IFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTI-PVLLRLLFIPLFLLCNYPP-LP--- 337 (406)
T ss_pred ecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehH-HHHHHHHHHHHHHHhccCC-CC---
Confidence 4555555443222 2223344444 777777776666666554 4444333 3333333333333332211 00
Q ss_pred CCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406 167 DNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (356)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~ 220 (356)
..-.+.++++....+.|+..|=..++...+...+.++++
T Consensus 338 ---------------v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e 376 (406)
T KOG1479|consen 338 ---------------VVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE 376 (406)
T ss_pred ---------------ceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHH
Confidence 001235667777788999999888888888899888655
No 296
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=54.60 E-value=2.1e+02 Score=27.78 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=63.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH-----HHHHHHhhccccCCCCCCcccccc
Q 018406 100 MHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGL-----TGITLCATMKVFMPNQDNCDRISQ 174 (356)
Q Consensus 100 ~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~ 174 (356)
+|-...+.+.+++.|.....+|+.+.-++.|.- ---+.+..=.++-++|- +.+.++.. .
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~-~~~~Fv~vElllgligg~Sa~~ly~~FA~~------~--------- 101 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDA-ALARFVDVELLLGLIGGVSAAALYLLFALE------S--------- 101 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCch-HHHHHHHHHHHHHHhccchHHHHHHHHHhc------c---------
Confidence 566777888999999999999988887776643 22212222222222211 11112210 0
Q ss_pred ccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhc-cCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 018406 175 LLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGAD-QFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFT 247 (356)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad-~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~ 247 (356)
......++++-+++|.-.|.-.|....+.-. +-..++ .-++....=|++...|+..-|.
T Consensus 102 ---------~~~~~Vly~lt~vIG~LVG~EiPL~mrml~~r~a~~k~-----~~s~vl~~DYLGal~~gLl~p~ 161 (508)
T COG4262 102 ---------APSRLVLYALTAVIGVLVGAEIPLLMRMLQRRQAKAKD-----LGSRVLTLDYLGALAGGLLWPF 161 (508)
T ss_pred ---------chHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-----hhhhhhhhHhhhhhhHHHHHHH
Confidence 0134566777788888888877777666544 111111 1334444455555555554443
No 297
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=52.43 E-value=1.9e+02 Score=26.59 Aligned_cols=33 Identities=12% Similarity=-0.128 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (356)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~ 140 (356)
....-++..+..+|+...|+.+-.-+-||+-+.
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~ 176 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIH 176 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHH
Confidence 444556777778888888988876656766544
No 298
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=51.44 E-value=8.1 Score=31.33 Aligned_cols=11 Identities=18% Similarity=0.014 Sum_probs=4.8
Q ss_pred hHHHHHHHHHH
Q 018406 259 GSAFGALAIAM 269 (356)
Q Consensus 259 ~~~f~i~~~~~ 269 (356)
||++++.+++.
T Consensus 1 RW~l~~iii~~ 11 (130)
T PF12273_consen 1 RWVLFAIIIVA 11 (130)
T ss_pred CeeeHHHHHHH
Confidence 34554444433
No 299
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=51.27 E-value=2e+02 Score=26.46 Aligned_cols=17 Identities=24% Similarity=0.022 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhhhc
Q 018406 187 MLYLYTVLYITGFGAAG 203 (356)
Q Consensus 187 ~~~~~~~~~l~gig~g~ 203 (356)
.+.+.+..++.+++.++
T Consensus 23 ~~l~~~~~~~~~F~~~m 39 (284)
T PF12805_consen 23 PWLLILVLALLTFFFGM 39 (284)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 44555555555555444
No 300
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=50.61 E-value=1.9e+02 Score=28.60 Aligned_cols=57 Identities=9% Similarity=-0.002 Sum_probs=41.3
Q ss_pred HHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 018406 196 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 258 (356)
Q Consensus 196 l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw 258 (356)
+.+...-.......++.+...|++. -|+.+.+.+...|+|+---.+++.++.|..++
T Consensus 378 ~~~~~~ts~fv~~maf~aqisdp~i------ggTymTlLNTLsnLGg~wp~tv~l~l~D~ltv 434 (510)
T KOG3574|consen 378 FHQVFVTSMFVSGMAFHAQISDPAI------GGTYMTLLNTLSNLGGNWPGTVALWLADGLTV 434 (510)
T ss_pred HhhhHHHHHHHHHHHHHhhcCCccc------CccHHHHHHHHHHhcCCcHHHHHHHhcccCce
Confidence 3333333445667788888888877 78889999999999987777777777765544
No 301
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=46.53 E-value=1.2e+02 Score=29.37 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=12.8
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHH
Q 018406 130 DAYLGRYWTIAIFTTIYLAGLTGI 153 (356)
Q Consensus 130 D~~~GRr~~i~~~~~l~~~g~~~~ 153 (356)
++..|..|++.+-....++|+-.+
T Consensus 197 ~~~v~~~r~V~vNl~~~~l~l~tl 220 (374)
T PF01528_consen 197 HRVVGPFRAVVVNLVLSLLGLETL 220 (374)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH
Confidence 333566666666555555544333
No 302
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=45.71 E-value=92 Score=24.10 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhcchhH
Q 018406 120 ASSVLGGFLADAYLGRYW 137 (356)
Q Consensus 120 ~~~~~~G~lsD~~~GRr~ 137 (356)
+..++.|..-|+.+|-.+
T Consensus 57 l~G~~lG~WLD~~~~t~~ 74 (100)
T TIGR02230 57 LLGVAVGIWLDRHYPSPF 74 (100)
T ss_pred HHHHHHHHHHHhhcCCCc
Confidence 345556777777777654
No 303
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=45.01 E-value=1.8e+02 Score=28.31 Aligned_cols=96 Identities=6% Similarity=-0.017 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhH
Q 018406 108 SNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM 187 (356)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (356)
|..=.+..+.++++.++.|.+.-.+ -|..-++++..-...+..++..+. +.++
T Consensus 274 G~veAv~tlLGa~~~~~~g~l~i~w-~r~g~~ll~~~s~~~agllf~m~~--------------------------t~~I 326 (433)
T KOG3810|consen 274 GAVEAVSTLLGAIAALAAGYLNINW-NRWGDLLLAVGSAVQAGLLFIMAQ--------------------------TQHI 326 (433)
T ss_pred CHHHHHHHHHHHHHHHHHHheeecc-chhhHHHHHHHHHHhhhhhhhhhc--------------------------ccce
Confidence 4455566777788888888887665 555333333332222222222211 1357
Q ss_pred HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHH
Q 018406 188 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL 236 (356)
Q Consensus 188 ~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~ 236 (356)
+..+++.++...-.....+....-+|.....+. .|-.|++..+
T Consensus 327 w~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~------~gLvFGiNTF 369 (433)
T KOG3810|consen 327 WVCYAGYVLFRVIYQLTITIATFQIARNLSSEL------FGLVFGINTF 369 (433)
T ss_pred ehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhh------heeeeehHHH
Confidence 888888888777667767777777778777665 7777776543
No 304
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=43.22 E-value=3.8e+02 Score=27.33 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYI 252 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i 252 (356)
++-+.....++.++|.+++.++.-.+
T Consensus 152 ~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 152 VGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred cchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 67777777778888888887765444
No 305
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=42.69 E-value=2.3e+02 Score=24.63 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018406 109 NAVNNFLGISQASSVLGGFL 128 (356)
Q Consensus 109 ~~~~~~~~~~~~~~~~~G~l 128 (356)
.......++..+|..+++.+
T Consensus 50 ~~~~~~i~~F~~G~~~~~~i 69 (209)
T PF06912_consen 50 LRYLLAILSFILGAFLAGLI 69 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344555666667777777
No 306
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=41.53 E-value=99 Score=25.69 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=23.0
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHhhcccccccC
Q 018406 250 VYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL 287 (356)
Q Consensus 250 ~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~ 287 (356)
.|-...+||.+.+.+...+.+...++++=..|+|+...
T Consensus 53 m~~spy~G~~s~~~ftv~fv~m~~~llfDI~P~YrfED 90 (155)
T PF10777_consen 53 MYYSPYFGLGSVWGFTVFFVVMAAFLLFDIKPRYRFED 90 (155)
T ss_pred HHhcchhhhHHHHHHHHHHHHHHHHHHhhccceeeecc
Confidence 34455667766666555555555666666677777543
No 307
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=38.47 E-value=1.6e+02 Score=24.43 Aligned_cols=16 Identities=25% Similarity=0.115 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhcchh
Q 018406 120 ASSVLGGFLADAYLGRY 136 (356)
Q Consensus 120 ~~~~~~G~lsD~~~GRr 136 (356)
++-+++++++|+. |+-
T Consensus 87 ~~l~v~~~La~~L-~~~ 102 (150)
T COG3086 87 VGLFLGAILAQYL-FFS 102 (150)
T ss_pred HHHHHHHHHHHHH-hhh
Confidence 3444555666665 443
No 308
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=36.26 E-value=4.5e+02 Score=26.23 Aligned_cols=58 Identities=12% Similarity=-0.030 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q 018406 92 MVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLG-RYWTIAIFTTIYLAGL 150 (356)
Q Consensus 92 l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~G-Rr~~i~~~~~l~~~g~ 150 (356)
.|.-.-..+|++..+.+.+++.-.+.+.++.++--...- +.| |-++++.+.+.++.-.
T Consensus 36 VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~-~~g~~lP~~lG~sFafi~p~ 94 (451)
T COG2233 36 VPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTG-PGGSGLPSYLGSSFAFVAPM 94 (451)
T ss_pred hhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcccCCCeeEechHHHHHHH
Confidence 444455789999999999999999999998888765333 323 4466666655555433
No 309
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=34.88 E-value=1.3e+02 Score=26.90 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhh
Q 018406 233 FFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIG 279 (356)
Q Consensus 233 ~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~ 279 (356)
|+-++..++.+...++.+++.. ..|.|.+.+++..+.+.++.+.
T Consensus 29 ~~ml~a~l~~~~v~v~ig~l~~---~~~~~~i~gi~~g~l~am~vl~ 72 (224)
T PF13829_consen 29 WLMLGAFLGPIAVFVLIGLLFG---SWWYWLIIGILLGLLAAMIVLS 72 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444443444444433 3344445444444333334443
No 310
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=31.09 E-value=2e+02 Score=24.88 Aligned_cols=21 Identities=24% Similarity=0.221 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 018406 112 NNFLGISQASSVLGGFLADAY 132 (356)
Q Consensus 112 ~~~~~~~~~~~~~~G~lsD~~ 132 (356)
.-|.++..+.+.+.|+++||.
T Consensus 89 gGyL~gfi~aa~l~G~l~~k~ 109 (184)
T COG1268 89 GGYLIGFIIAAFLIGLLAEKI 109 (184)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 447788888999999999997
No 311
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=30.32 E-value=3.5e+02 Score=25.61 Aligned_cols=74 Identities=15% Similarity=0.034 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHH----HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 018406 81 ERMAYFGLSVNMVTFMFYVMHKS-FADSSNAV----NNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITL 155 (356)
Q Consensus 81 ~~~~~~~~~~~l~~yl~~~~~~s-~~~a~~~~----~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~ 155 (356)
..++.-++-.++..+..+.+.-+ ........ ....++..++..+.+++-|++ |-...+.++.+.++++.+....
T Consensus 43 ia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~-~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 43 IAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY-GWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhcccc-chhhhhhHHHHHHHHHHHHHHh
Confidence 34555567778888888887755 44444344 444555556666677899998 9999999888888887776554
No 312
>PRK11469 hypothetical protein; Provisional
Probab=29.53 E-value=3.7e+02 Score=23.21 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=31.8
Q ss_pred CCChHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 101 HKSFADSSNAVNNFLGISQ-ASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (356)
Q Consensus 101 ~~s~~~a~~~~~~~~~~~~-~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~ 153 (356)
|.+.......+.+...... ++..++..+.+++ |||..++-+.++..+|.-.+
T Consensus 130 g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~-g~~a~~lgG~iLI~iGi~il 182 (188)
T PRK11469 130 QVNIIATALAIGCATLIMSTLGMMVGRFIGSII-GKKAEILGGLVLIGIGVQIL 182 (188)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444 3344555566665 99988888888888877544
No 313
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=29.32 E-value=1.1e+02 Score=26.10 Aligned_cols=32 Identities=9% Similarity=-0.228 Sum_probs=16.5
Q ss_pred HHhcCCChHHH--HHHHHHHHHHHHHHHHHHHHH
Q 018406 97 FYVMHKSFADS--SNAVNNFLGISQASSVLGGFL 128 (356)
Q Consensus 97 ~~~~~~s~~~a--~~~~~~~~~~~~~~~~~~G~l 128 (356)
+..+|+++... ...+.+..++..+||.+|..+
T Consensus 69 ~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~v 102 (173)
T PF08566_consen 69 QQIMGLDPFMVYGLATLACGALGWLVGPSLGNQV 102 (173)
T ss_pred ccccCcCHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 44568887543 233334455555555555443
No 314
>PRK02237 hypothetical protein; Provisional
Probab=29.31 E-value=1.5e+02 Score=23.30 Aligned_cols=48 Identities=23% Similarity=0.131 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 018406 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGI 153 (356)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~ 153 (356)
+.++-+...|.+.+.+.+++++++.|.. -.-+-=.++..+.++|..+.
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~-~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGV-RPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCc-CCChhHHHhHHHHHHhHHHh
Confidence 4578889999999999999999999987 54444456766766666544
No 315
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.22 E-value=3e+02 Score=21.68 Aligned_cols=18 Identities=6% Similarity=0.037 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 018406 239 TVGAIVAFTLVVYIQMEH 256 (356)
Q Consensus 239 ~iG~~i~p~i~~~i~~~~ 256 (356)
.+++.+--...||+.+++
T Consensus 52 fIsGilVGa~iG~llD~~ 69 (116)
T COG5336 52 FISGILVGAGIGWLLDKF 69 (116)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444445667888775
No 316
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=27.83 E-value=7.2e+02 Score=25.96 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhcc
Q 018406 243 IVAFTLVVYIQMEHG 257 (356)
Q Consensus 243 ~i~p~i~~~i~~~~g 257 (356)
++.-.++++....+|
T Consensus 242 l~~~~~~~~~~~~~g 256 (679)
T TIGR02916 242 LLAMAGAGYYLRYFG 256 (679)
T ss_pred HHHHHHHHHHHHHhC
Confidence 334445577777665
No 317
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=27.43 E-value=74 Score=29.23 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH---Hh--hcchhHHHHHHHHHHHHHHHHHH-hhcc
Q 018406 227 LDRFFNFFYLSVTVGAIVAFTLVVYI---QM--EHGWGSAFGALAIAMGISNMLFF-IGTP 281 (356)
Q Consensus 227 r~~~~~~~~~~~~iG~~i~p~i~~~i---~~--~~gw~~~f~i~~~~~~i~~~~~~-~~~~ 281 (356)
++.+..+-.++.++|+.++.+..... .+ ...|++.+.+.+++.++.++++. ++++
T Consensus 4 K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~ 64 (267)
T PF07672_consen 4 KSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGKN 64 (267)
T ss_pred cceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45555555567778887764332211 21 22499998888877766666554 4444
No 318
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.49 E-value=3.2e+02 Score=21.12 Aligned_cols=20 Identities=5% Similarity=0.272 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 018406 238 VTVGAIVAFTLVVYIQMEHG 257 (356)
Q Consensus 238 ~~iG~~i~p~i~~~i~~~~g 257 (356)
..+..++|..++-|+-..++
T Consensus 52 ~v~pil~G~~lG~WLD~~~~ 71 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYP 71 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 33334444445556666655
No 319
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=24.70 E-value=5.1e+02 Score=28.64 Aligned_cols=22 Identities=5% Similarity=-0.352 Sum_probs=11.8
Q ss_pred HHHHHHHHhcCCChHHHHHHHH
Q 018406 91 NMVTFMFYVMHKSFADSSNAVN 112 (356)
Q Consensus 91 ~l~~yl~~~~~~s~~~a~~~~~ 112 (356)
++...+-..+|++....++.+.
T Consensus 954 ~~at~IG~vlGIse~VmGlTfL 975 (1096)
T TIGR00927 954 WWAHQVGETIGISEEIMGLTIL 975 (1096)
T ss_pred HHHHHhhhhcCCChhhhhhhhh
Confidence 3444445566676665554443
No 320
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=24.64 E-value=6.7e+02 Score=24.57 Aligned_cols=74 Identities=18% Similarity=0.097 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAG 149 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g 149 (356)
...+..+..++--+.++++..-... ..+. .+..+... ...+..+..+...+.|++..+|..+....--.+.|
T Consensus 195 n~~~~~lGt~lLw~gW~gFN~Gs~~------~~~~-~~~~a~~n-T~lA~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAG 266 (403)
T TIGR00836 195 NVPLVVLGTFILWFGWFGFNAGSAL------AANG-TAAYAAVN-TNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAG 266 (403)
T ss_pred CHHHHHHHHHHHHHHHhcccchhhc------ccch-HHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHhhhhhh
Confidence 4566666667777777766553321 1221 22222222 22233344555677777645555554433344444
Q ss_pred HH
Q 018406 150 LT 151 (356)
Q Consensus 150 ~~ 151 (356)
++
T Consensus 267 LV 268 (403)
T TIGR00836 267 LV 268 (403)
T ss_pred he
Confidence 44
No 321
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=23.81 E-value=2.4e+02 Score=19.02 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhcchh
Q 018406 238 VTVGAIVAFTLVVYIQMEHGWG 259 (356)
Q Consensus 238 ~~iG~~i~p~i~~~i~~~~gw~ 259 (356)
..+...+|..++-++.+..|+.
T Consensus 7 ~ilt~~lGt~~~D~l~~~lglg 28 (55)
T PF03988_consen 7 KILTTTLGTTAGDFLSKTLGLG 28 (55)
T ss_pred HHHHHHhHHHHHHHHHhccCcc
Confidence 3444556666677777766543
No 322
>PRK10692 hypothetical protein; Provisional
Probab=23.46 E-value=1.3e+02 Score=22.53 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=15.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 018406 134 GRYWTIAIFTTIYLAGLTGITL 155 (356)
Q Consensus 134 GRr~~i~~~~~l~~~g~~~~~~ 155 (356)
-||.+.+++.+++.+|++.+..
T Consensus 2 KRk~a~~~GN~lMglGmv~Mv~ 23 (92)
T PRK10692 2 KRKNASLLGNVLMGLGLVVMVV 23 (92)
T ss_pred cchhhHHHhhHHHHHHHHHHHH
Confidence 4677777788777777766653
No 323
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=23.36 E-value=3.2e+02 Score=20.36 Aligned_cols=58 Identities=17% Similarity=0.090 Sum_probs=29.7
Q ss_pred HHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Q 018406 198 GFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 264 (356)
Q Consensus 198 gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i 264 (356)
|+|--.+.+..|.+..|.-=... ..++...+..+|..+|.+...++..+...+..+..
T Consensus 5 GigRFayTplLP~M~~~~~ls~~---------~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~ 62 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLS---------QAGWLASANYLGYLVGALLASRLPRHSRPRRLLRA 62 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 44444555667777666433222 12233334556666666666666655444333433
No 324
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=22.07 E-value=1.4e+02 Score=28.83 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSF 104 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~ 104 (356)
.-+||-.++++...+.....+||+.-+++.|...++..+.
T Consensus 59 D~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~ 98 (400)
T KOG3827|consen 59 DLKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDP 98 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCC
Confidence 5789999999999999999999999999999988876654
No 325
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=21.34 E-value=4.1e+02 Score=20.82 Aligned_cols=50 Identities=24% Similarity=0.145 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 104 FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (356)
Q Consensus 104 ~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~ 154 (356)
+...+-+...|-+...+.++++++..|.. -.-+-=.++..+.++|..+..
T Consensus 53 p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~-~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 53 PAAFGRVYAAYGGVFIVASLLWGWLVDGV-RPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred cccchhHHHHhhhhHHHHHHHHHhhhcCc-CCChHHHHhHHHHHHhHHheE
Confidence 36678888999999999999999999987 555555667777776665543
No 326
>PTZ00370 STEVOR; Provisional
Probab=20.95 E-value=4.9e+02 Score=24.23 Aligned_cols=6 Identities=0% Similarity=-0.169 Sum_probs=2.6
Q ss_pred hhccCC
Q 018406 212 GADQFD 217 (356)
Q Consensus 212 ~ad~f~ 217 (356)
+-.+|.
T Consensus 218 IfNMF~ 223 (296)
T PTZ00370 218 IFNMLS 223 (296)
T ss_pred eeecCC
Confidence 344444
No 327
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=20.66 E-value=2.3e+02 Score=26.73 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 018406 116 GISQASSVLGGFLADAY 132 (356)
Q Consensus 116 ~~~~~~~~~~G~lsD~~ 132 (356)
-...+.+.++.|++++|
T Consensus 253 ~~~~~wsrl~~Wla~~~ 269 (325)
T PF03213_consen 253 MKNSIWSRLGKWLAKRF 269 (325)
T ss_pred hhhhHHHHHHHHHHhhC
Confidence 34556778888888887
No 328
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=20.20 E-value=9.6e+02 Score=24.73 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhhhhhccCCCC
Q 018406 187 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 219 (356)
Q Consensus 187 ~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~ 219 (356)
...-...++.+|+|.|...-.+..+.....|..
T Consensus 325 ~~~g~~~l~al~LGMg~Plllv~~f~~~~LPk~ 357 (569)
T COG4232 325 ALLGGLALYALGLGMGLPLLLIGVFGNRLLPKP 357 (569)
T ss_pred HHHHHHHHHHHHHhcccchhhheecccccCCCC
Confidence 333344456677777777666666666666643
Done!