Query 018406
Match_columns 356
No_of_seqs 315 out of 2734
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:46:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018406.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018406hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.8 2.5E-19 8.4E-24 176.3 22.5 184 65-281 9-198 (491)
2 2xut_A Proton/peptide symporte 99.8 3.6E-19 1.2E-23 176.6 19.7 210 67-306 10-225 (524)
3 3o7q_A L-fucose-proton symport 99.8 3.7E-17 1.3E-21 157.9 23.8 180 65-277 22-227 (438)
4 1pw4_A Glycerol-3-phosphate tr 99.7 5.3E-17 1.8E-21 157.2 15.4 176 66-278 25-205 (451)
5 2gfp_A EMRD, multidrug resista 99.7 1E-15 3.4E-20 145.2 14.5 167 72-274 3-169 (375)
6 4gc0_A D-xylose-proton symport 99.6 9.9E-14 3.4E-18 136.0 19.7 133 105-254 55-187 (491)
7 1pw4_A Glycerol-3-phosphate tr 99.5 2.7E-13 9.3E-18 131.0 18.9 179 68-278 251-432 (451)
8 3o7q_A L-fucose-proton symport 99.5 3.8E-12 1.3E-16 122.5 21.5 167 69-273 258-426 (438)
9 2cfq_A Lactose permease; trans 99.4 2.8E-12 9.4E-17 123.9 15.5 173 71-278 222-398 (417)
10 2cfq_A Lactose permease; trans 99.3 7.1E-13 2.4E-17 128.0 0.8 170 69-269 7-177 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 2.2E-11 7.4E-16 119.4 10.9 185 70-281 284-473 (491)
12 4gc0_A D-xylose-proton symport 99.2 1.5E-09 5.2E-14 106.0 22.0 180 72-281 279-464 (491)
13 2gfp_A EMRD, multidrug resista 98.9 5.6E-10 1.9E-14 105.4 4.3 164 69-266 199-363 (375)
14 2xut_A Proton/peptide symporte 98.3 3.9E-07 1.3E-11 89.8 4.1 87 186-278 404-501 (524)
15 4aw6_A CAAX prenyl protease 1 48.9 1.4E+02 0.0047 28.7 11.2 58 96-154 149-213 (482)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.84 E-value=2.5e-19 Score=176.25 Aligned_cols=184 Identities=23% Similarity=0.385 Sum_probs=161.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYV-----MHKSFADSSNAVNNFLGISQASSVLGGFLADA-YLGRYWT 138 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~-~~GRr~~ 138 (356)
+++++.++.+.+..++..+.+|++..+++.|+++. +|++..+.+++.+++.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 45567788999999999999999999999999998 99999999999999999999999999999999 7 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCC
Q 018406 139 IAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 218 (356)
Q Consensus 139 i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~ 218 (356)
++++.++..++.+++.++. +...++++|++.|+|.+...+...++++|.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPF----------------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCC----------------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHhh----------------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 9999999999888776532 467788999999999999999999999999997
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406 219 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (356)
Q Consensus 219 ~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (356)
++ ++|+..+++++.+.++|..++|.+++++.+..||++.|++.++..++++++++...+
T Consensus 140 ~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 140 HD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp CT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 66 247788899999999999999999999999999999999987776666655554433
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.82 E-value=3.6e-19 Score=176.65 Aligned_cols=210 Identities=25% Similarity=0.446 Sum_probs=159.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH
Q 018406 67 GWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMH------KSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA 140 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~------~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~ 140 (356)
+++.++.+.+..++..+++|++..+++.|+++++| ++..+.+++.+++.++..++.+++|+++||++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 34556778888999999999999999999999999 999999999999999999999999999999559999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCC
Q 018406 141 IFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERS 220 (356)
Q Consensus 141 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~ 220 (356)
++.++..++.+++.++. .+.+.++++|++.|+|.++..+...++++|.+|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 142 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFE---------------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN 142 (524)
T ss_dssp HHHHHHHHHHHHHHHTS---------------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT
T ss_pred HHHHHHHHHHHHHHHhc---------------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc
Confidence 99999999888877642 036788899999999999999999999999999766
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcccccccCCCCChhHHHHHHH
Q 018406 221 KDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVL 300 (356)
Q Consensus 221 ~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 300 (356)
++++.+.+++++...++|..++|.+++++.+..||++.|++.+++.++.+++++...++++..+++.++..+..+.+
T Consensus 143 ---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (524)
T 2xut_A 143 ---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVI 219 (524)
T ss_dssp ---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-------------
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHH
Confidence 12235666779999999999999999999998999999998888776666655554444443333333333333443
Q ss_pred HHHHhc
Q 018406 301 VAAFRK 306 (356)
Q Consensus 301 ~~~~~~ 306 (356)
....++
T Consensus 220 ~~~~~~ 225 (524)
T 2xut_A 220 RSALLT 225 (524)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 333333
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.78 E-value=3.7e-17 Score=157.88 Aligned_cols=180 Identities=12% Similarity=-0.024 Sum_probs=147.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 018406 65 TGGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTT 144 (356)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~ 144 (356)
+++|+.++.+.+..++..+..+.+ ..+..++.+++|.+..+.+++.+.+.++..++.+++|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 456666666666666666666544 4445567889999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
++.++.+++..... ..+.+.++++|++.|+|.+...+...++++|.+|+++
T Consensus 100 ~~~~~~~~~~~~~~-------------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~---- 150 (438)
T 3o7q_A 100 LYALGAALFWPAAE-------------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS---- 150 (438)
T ss_dssp HHHHHHHHHHHHHH-------------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT----
T ss_pred HHHHHHHHHHhccc-------------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh----
Confidence 99999988743221 0158889999999999999999999999999999887
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcc-------------------------hhHHHHHHHHHHHHHHHHHH
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGISNMLFF 277 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~-~~~g-------------------------w~~~f~i~~~~~~i~~~~~~ 277 (356)
|+..+++++....+|..++|.+++++. +..+ |++.|++.+++.++..++++
T Consensus 151 --r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 151 --GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999888 5444 89999776666554444433
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.72 E-value=5.3e-17 Score=157.18 Aligned_cols=176 Identities=13% Similarity=0.075 Sum_probs=147.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 018406 66 GGWIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI 145 (356)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l 145 (356)
.+|+.++.+.+..++..+..+.+...++ ++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~ 101 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHH
Confidence 3456666666666666666554444444 555677 9999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHH----HhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCCh
Q 018406 146 YLAGLTGITL----CATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSK 221 (356)
Q Consensus 146 ~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~ 221 (356)
+.++.+++.+ +. +.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 102 ~~~~~~~~~~~~~~~~----------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~- 152 (451)
T 1pw4_A 102 AAAVMLFMGFVPWATS----------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE- 152 (451)
T ss_dssp HHHHHHHHHHCHHHHS----------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH-
T ss_pred HHHHHHHHHhhhhccc----------------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh-
Confidence 9999988877 42 35678899999999999999999999999999776
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHh
Q 018406 222 DYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 222 ~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~~~~~~ 278 (356)
|+..+++++.+..+|..++|.+++++.+..| |++.|++.+++.++..++.+.
T Consensus 153 -----r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~ 205 (451)
T 1pw4_A 153 -----RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 205 (451)
T ss_dssp -----HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999888898 999999888776655544433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.65 E-value=1e-15 Score=145.15 Aligned_cols=167 Identities=13% Similarity=0.115 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+.+.+..++..+....+...++ .+.+++|.+..+.+.+.+.+.++..++.++.|+++||+ |||++++++.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIA-DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 3445555555555554554444 45678999999999999999999999999999999998 999999999999999988
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
++.++. +...+++++++.|++.+...+...+++.|.+|+++ |++.+
T Consensus 81 ~~~~~~----------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 126 (375)
T 2gfp_A 81 VAVTTS----------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHAN 126 (375)
T ss_dssp HHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHH
T ss_pred HHHHhc----------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHH
Confidence 887753 57888999999999999999999999999999877 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 232 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 274 (356)
Q Consensus 232 ~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~ 274 (356)
++++....+|..++|.+++++.+..||++.|++.++..++..+
T Consensus 127 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 127 SLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888999999887776554443
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.57 E-value=9.9e-14 Score=136.00 Aligned_cols=133 Identities=12% Similarity=0.108 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcch
Q 018406 105 ADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKS 184 (356)
Q Consensus 105 ~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (356)
...+++++.+.++..++++++|+++||+ |||++++++.+++.++.++++++......... ...-...-.
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~----------~~~~~~~~a 123 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINP----------DNTVPVYLA 123 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS----------SSSCCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----------hhHHHHHHh
Confidence 4557888899999999999999999998 99999999999999999888753210000000 000000001
Q ss_pred hhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018406 185 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 254 (356)
Q Consensus 185 ~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~ 254 (356)
.+...++++|++.|+|.|+..+..+.+++|..|++. |+...++++.+..+|..+++.++..+..
T Consensus 124 ~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 124 GYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 368899999999999999999999999999999877 8999999999999999998877766554
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.53 E-value=2.7e-13 Score=130.98 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=146.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHH
Q 018406 68 WIAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYL-GRYWTIAIFTTIY 146 (356)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~-GRr~~i~~~~~l~ 146 (356)
.+.++...+..++..+.++++..+++.|+++.+|++..+++.+.+...++..++.++.|+++||+. |||+.+.++.++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 456778888888888888889999999999889999999999999999999999999999999932 8888887777665
Q ss_pred H-HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhh
Q 018406 147 L-AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKT 225 (356)
Q Consensus 147 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~ 225 (356)
. ++.+++.+. + ..+...+++..++.|++.++..+....+..|.+|++.
T Consensus 331 ~~~~~~~~~~~-------~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----- 379 (451)
T 1pw4_A 331 VTIATIVYWMN-------P-------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA----- 379 (451)
T ss_dssp HHHHHHHTTSC-------C-------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH-----
T ss_pred HHHHHHHHHHh-------c-------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh-----
Confidence 5 444433321 1 0135666777788888888888888899999999876
Q ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 226 HLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 226 ~r~~~~~~~~~~~~i-G~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
++..+++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 380 -~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 380 -AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999998887777666555444
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.47 E-value=3.8e-12 Score=122.52 Aligned_cols=167 Identities=10% Similarity=0.008 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTF-MFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~ 147 (356)
+.++..++..++.....+++..+++.| +++.+|++..+++.....+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 345666677777777788888899999 8888899999999999999999999999999999997 99999999988888
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++.+++.... +.. .++..++.+++.+...+...++..|.+|++ +
T Consensus 337 ~~~~~~~~~~----------------------------~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~ 380 (438)
T 3o7q_A 337 ALCLISAFAG----------------------------GHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------T 380 (438)
T ss_dssp HHHHHHHHCC----------------------------HHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------H
T ss_pred HHHHHHHHcC----------------------------CcH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------c
Confidence 7776665531 222 234457788888888899999989999843 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHHHH
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISN 273 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~g-w~~~f~i~~~~~~i~~ 273 (356)
+...++.. ...+|+.++|.+.+++.+..| ++..|.+.+++.++.+
T Consensus 381 ~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 381 KYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred cchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33444444 566999999999999999998 9999887666554433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.41 E-value=2.8e-12 Score=123.89 Aligned_cols=173 Identities=10% Similarity=0.060 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Q 018406 71 ALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKS---FADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYL 147 (356)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s---~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~ 147 (356)
.+...+..++....++.+..+++.|+.+.++.. ....+....+..++..++.+++|+++||+ |||+++.++.++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~ 300 (417)
T 2cfq_A 222 LWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHH
Confidence 344444334444444455566788887666532 23345566666677788899999999998 99999988887776
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++.+++.+. + +...+++..++.+++.+...+....+.+|.+|++. |
T Consensus 301 ~~~~~~~~~-------~---------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~ 346 (417)
T 2cfq_A 301 VRIIGSSFA-------T---------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------S 346 (417)
T ss_dssp HHHHHHTTC-------C---------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------H
T ss_pred HHHHHHHHh-------c---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------H
Confidence 665444321 1 24455555666677766666677889999999766 8
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHh
Q 018406 228 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 228 ~~~~~~-~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~ 278 (356)
++..++ ++....+|+.++|.+.+++.+..|+...|.+.+++.+++.++.+.
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 888887 577778999999999999998888888888877776666554433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.25 E-value=7.1e-13 Score=128.03 Aligned_cols=170 Identities=11% Similarity=-0.113 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLA 148 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~ 148 (356)
|..+.+....++..+.+..+..+++.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||++++++.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 3455566666666666666678899999999999999999999999999999999999999998 999999988877654
Q ss_pred HHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhH-HHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 149 GLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQM-LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 149 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
+...+......+ .. ..++.++++.+++.+...+...+...+..++.. +++
T Consensus 86 ~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~~ 136 (417)
T 2cfq_A 86 MFAPFFIFIFGP-------------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRS 136 (417)
T ss_dssp CHHHHHHHTHHH-------------------------HHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh----hhc
Confidence 322221100000 00 012233334344333333333333333332111 124
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 269 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~ 269 (356)
+..++..+...++|..++|.+++++.+ .+|++.|++.++..
T Consensus 137 ~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 137 NFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp TCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 555666666778899999999998876 57998887655543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.24 E-value=2.2e-11 Score=119.37 Aligned_cols=185 Identities=12% Similarity=0.023 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH-----HHHH
Q 018406 70 AALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIA-----IFTT 144 (356)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~-----~~~~ 144 (356)
..+.+.+..++..+.++.....++.|+.+.++.+....+.......++..++.++.|+++||+ |||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 344455455555556666667788899888888866777777888888888899999999998 9986544 6666
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhh
Q 018406 145 IYLAGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYK 224 (356)
Q Consensus 145 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~ 224 (356)
+..++.+++.+...... .....+...++++.++.|+|.+...+....+..|.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~---- 419 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG-------------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF---- 419 (491)
T ss_dssp HHHHHHTTTHHHHHHCC-------------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC----
T ss_pred HHHHHHHHHHHHHHhcC-------------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH----
Confidence 66666555544321000 0001134566677788899999888999999999999887
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406 225 THLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 281 (356)
Q Consensus 225 ~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (356)
|+...++++...++|..+++.+.+++.+. ++.+.|.+.+++.++..++++...+
T Consensus 420 --~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 420 --NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp --SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988887653 5666777766666555555544433
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.21 E-value=1.5e-09 Score=106.01 Aligned_cols=180 Identities=9% Similarity=0.013 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 018406 72 LFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLAGLT 151 (356)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l~~~g~~ 151 (356)
+..+...++..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+..+..++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence 3333333333333333333444556667888888777777778888899999999999998 999999999888887777
Q ss_pred HHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHH
Q 018406 152 GITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFF 231 (356)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~ 231 (356)
.+...... .. ......+.+..+..+++ .+..+....+.+|.||++. |+...
T Consensus 358 ~l~~~~~~----~~------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~ 408 (491)
T 4gc0_A 358 SLGTAFYT----QA------------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKAL 408 (491)
T ss_dssp HHHHHHHT----TC------------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHH
T ss_pred HHHHHHhc----cc------------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHH
Confidence 66554320 00 01112222222222232 2334566789999999998 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hcchhHHHHHHHHHHHHHHHHHHhhcc
Q 018406 232 NFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLFFIGTP 281 (356)
Q Consensus 232 ~~~~~~~~iG~~i~p~i~~~i~~------~~gw~~~f~i~~~~~~i~~~~~~~~~~ 281 (356)
++.+....+|+.+++.+..++.+ ..++.+.|++.+++.+++.++.++..|
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 99888888888888877666543 334556777777766666665544444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.91 E-value=5.6e-10 Score=105.36 Aligned_cols=164 Identities=12% Similarity=-0.095 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-HH
Q 018406 69 IAALFIFGNEMAERMAYFGLSVNMVTFMFYVMHKSFADSSNAVNNFLGISQASSVLGGFLADAYLGRYWTIAIFTTI-YL 147 (356)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G~lsD~~~GRr~~i~~~~~l-~~ 147 (356)
|.++...+..++.....+++..+++.|+++.+|++..+++.+.....++..++.++.++++||+ ||+ +.++..+ ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566777777777788888888888898888999999999999999999999999999999997 872 2233322 22
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccCCCCCcchhhHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhh
Q 018406 148 AGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHL 227 (356)
Q Consensus 148 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r 227 (356)
++......... + ..+.+.+++..++.+++.+...+...++..|.+| +. +
T Consensus 276 ~~~~~~~~~~~-----~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~ 324 (375)
T 2gfp_A 276 AGLLMWIPDWF-----G-------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------A 324 (375)
T ss_dssp TSSSSSHHHHH-----H-------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------H
T ss_pred HHHHHHHHhhh-----c-------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------c
Confidence 22221111110 0 0135556677788899999989999999999987 44 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 018406 228 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 266 (356)
Q Consensus 228 ~~~~~~~~~~~~iG~~i~p~i~~~i~~~~gw~~~f~i~~ 266 (356)
++..++++...++|..++|.+.+++.+..+|...+.+..
T Consensus 325 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 325 GTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999999999999888777877766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.27 E-value=3.9e-07 Score=89.76 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHhhhchhhhhhhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--ch-----
Q 018406 186 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW----- 258 (356)
Q Consensus 186 ~~~~~~~~~~l~gig~g~~~~~~~~~~ad~f~~~~~~~~~~r~~~~~~~~~~~~iG~~i~p~i~~~i~~~~--gw----- 258 (356)
+...++++.++.|++.+...+....+..|.+|++. |+..+++++....+|+.++|.+.+++.+.. +|
T Consensus 404 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~ 477 (524)
T 2xut_A 404 SIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTG 477 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 34556677888999999999999999999999887 899999999999999999999999887643 23
Q ss_pred ----hHHHHHHHHHHHHHHHHHHh
Q 018406 259 ----GSAFGALAIAMGISNMLFFI 278 (356)
Q Consensus 259 ----~~~f~i~~~~~~i~~~~~~~ 278 (356)
+..|++.+++.+++.+++++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~ 501 (524)
T 2xut_A 478 MSVTAFQMFFFAGFAILAAIVFAL 501 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccccccHHHHHHHHHHHHHHHHHH
Confidence 22255555555554444433
No 15
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=48.95 E-value=1.4e+02 Score=28.70 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=29.9
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 018406 96 MFYVMHKSFADSSNAVNNFLGISQASSVLGG-------FLADAYLGRYWTIAIFTTIYLAGLTGIT 154 (356)
Q Consensus 96 l~~~~~~s~~~a~~~~~~~~~~~~~~~~~~G-------~lsD~~~GRr~~i~~~~~l~~~g~~~~~ 154 (356)
+.+.+|+++...+..+.-..-...++.++++ ++.++. |+++.+....+..++..++..
T Consensus 149 le~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~~ii~~~-g~~~wl~~w~~~~~~~l~~~~ 213 (482)
T 4aw6_A 149 IEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIG-GDYFFIYAWLFTLVVSLVLVT 213 (482)
T ss_dssp HHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CSSHHHHHHHHHHHHHHHHHH
T ss_pred ehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHHHH
Confidence 4577899876555443332222222222222 456665 888776655555444444333
Done!