Query 018408
Match_columns 356
No_of_seqs 278 out of 3086
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 2E-27 7E-32 223.4 25.6 209 87-295 12-251 (491)
2 3o7q_A L-fucose-proton symport 99.9 7.2E-24 2.5E-28 196.1 20.4 231 85-348 24-284 (438)
3 1pw4_A Glycerol-3-phosphate tr 99.9 4.5E-24 1.6E-28 198.1 13.5 183 85-270 26-213 (451)
4 2gfp_A EMRD, multidrug resista 99.9 1.6E-22 5.6E-27 183.3 15.6 176 90-268 3-179 (375)
5 4aps_A DI-OR tripeptide H+ sym 99.8 8.1E-19 2.8E-23 164.7 18.8 166 94-262 20-194 (491)
6 2xut_A Proton/peptide symporte 99.8 2.5E-17 8.5E-22 155.9 17.8 164 97-263 22-197 (524)
7 1pw4_A Glycerol-3-phosphate tr 99.6 2.8E-14 9.6E-19 132.0 18.1 172 90-264 255-433 (451)
8 4gc0_A D-xylose-proton symport 99.5 2.3E-14 8E-19 134.2 12.2 170 96-267 286-466 (491)
9 2cfq_A Lactose permease; trans 99.5 1.3E-15 4.4E-20 140.0 1.2 167 97-267 17-190 (417)
10 3o7q_A L-fucose-proton symport 99.5 1.3E-13 4.3E-18 127.2 13.2 155 104-263 275-431 (438)
11 2cfq_A Lactose permease; trans 99.5 1.2E-13 4.2E-18 126.8 11.9 143 125-268 260-404 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.4 4E-12 1.4E-16 119.0 14.4 154 106-263 302-470 (491)
13 2gfp_A EMRD, multidrug resista 99.1 1.5E-11 5.1E-16 111.0 3.7 156 89-250 201-362 (375)
14 2xut_A Proton/peptide symporte 98.9 4.6E-09 1.6E-13 99.0 11.3 138 126-263 337-501 (524)
15 2g9p_A Antimicrobial peptide l 63.2 3.9 0.00013 19.4 1.4 14 143-156 2-15 (26)
16 4dve_A Biotin transporter BIOY 34.8 94 0.0032 24.4 6.1 25 130-154 99-123 (198)
17 3arc_T Photosystem II reaction 28.7 58 0.002 17.0 2.6 11 259-269 18-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=2e-27 Score=223.38 Aligned_cols=209 Identities=24% Similarity=0.481 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCC------ChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHh
Q 018408 87 PHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEG------NPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQID 160 (356)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~ 160 (356)
...++++++.+..||+...++..+|.+.++++.+. ++...+++.+.+.+|+.+|++++|+++||+|||++++++
T Consensus 12 ~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~ 91 (491)
T 4gc0_A 12 SITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIA 91 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34556678889999999999999999988875421 234578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH------------------HhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHH
Q 018408 161 TIPLILGAIISA------------------QAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGT 222 (356)
Q Consensus 161 ~~~~~i~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~ 222 (356)
.+++.++.++++ +++|++.++++|+++|++.|+..+..+.+++|+.|+++|++..++.+.+.
T Consensus 92 ~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~ 171 (491)
T 4gc0_A 92 AVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAI 171 (491)
T ss_dssp HHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhh
Confidence 999999999988 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCC-------CchhHHHHHHhHHHHHHHHHHhhcccCChHHHHhcCCHHHHHHHHHHHcCCcchHH
Q 018408 223 CLGIITSLFLGIPAEDD-------PHWWRTMLYIASLPGFILALGMQFTVESPRWLCKGGMLNDAKAVIANLWGESEINK 295 (356)
Q Consensus 223 ~~g~~~~~~i~~~l~~~-------~~~w~~~~~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (356)
.+|.++++.++..+... ..+|++.+.+.+++.++..+..++.||+|+|+..+++.+++.+.+++.++++..++
T Consensus 172 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~ 251 (491)
T 4gc0_A 172 IFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ 251 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence 99999988877654432 12388888888888888888889999999999999999999999988766544333
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.92 E-value=7.2e-24 Score=196.13 Aligned_cols=231 Identities=16% Similarity=0.164 Sum_probs=185.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (356)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 164 (356)
++..+..+++..+..++......+..|.+.+++|. +..+.+++.+.+.+++.++.++.|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTL--TNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 34555666777788888888888889999999999 5667999999999999999999999999999999999999999
Q ss_pred HHHHHHH---HHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccC-CCC
Q 018408 165 ILGAIIS---AQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAE-DDP 240 (356)
Q Consensus 165 ~i~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~-~~~ 240 (356)
+++.+++ +++++++.++++|++.|++.+...+....+++|++|+++|++++++.+.+..+|..+++.+++.+. +..
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 181 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV 181 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSS
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999998 788999999999999999999999999999999999999999999999999999999999999888 555
Q ss_pred ch------------------------hHHHHHHhHHHHHHHHHHhhc--ccCChHHHHhcCCHHHHHHHHHHHcCCcchH
Q 018408 241 HW------------------------WRTMLYIASLPGFILALGMQF--TVESPRWLCKGGMLNDAKAVIANLWGESEIN 294 (356)
Q Consensus 241 ~~------------------------w~~~~~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (356)
+. |++.|++.+++.++..+..++ .||+++. . +++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----~--------------~~~-- 241 (438)
T 3o7q_A 182 PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----N--------------HSD-- 241 (438)
T ss_dssp CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT----C--------------CCC--
T ss_pred ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc----c--------------ccc--
Confidence 54 899998776666555544433 3444210 0 000
Q ss_pred HHHHHHHHHHHhcCCCCccchhhhcccCcchhhHHHHHHHHHHHHHHHHHHHhh
Q 018408 295 KAIEEFQLVIKKDGSDLDSQWSELLEEPHSRVAFIGDGALASLLVGVTNFAGLR 348 (356)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
+++++...++++++++|.++...+..........+...+.+.+
T Consensus 242 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 3o7q_A 242 -----------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284 (438)
T ss_dssp -----------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111112467788899999988887766555555555555555
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.91 E-value=4.5e-24 Score=198.14 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=161.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHH
Q 018408 85 AFPHVLIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPL 164 (356)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~ 164 (356)
+++.+..+.++.+..++....+.+.+|.+.+++ . +..+.+++.+++.+++.++.+++|+++||+|||++++++.++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 26 RWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-F--SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-T--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c--cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 345566777778888888888888999999998 7 4555999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH----hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCC
Q 018408 165 ILGAIISAQ----AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDP 240 (356)
Q Consensus 165 ~i~~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~ 240 (356)
+++.+++++ +++++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.+++|.+++.+.+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 103 AAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999998876554
Q ss_pred chhHHHHHHhHHHHHHHHH-HhhcccCChHH
Q 018408 241 HWWRTMLYIASLPGFILAL-GMQFTVESPRW 270 (356)
Q Consensus 241 ~~w~~~~~~~~~~~~~~~~-~~~~~~e~p~~ 270 (356)
++||+.|++.+++.++..+ ..+++||+|+.
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 213 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDTPQS 213 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence 3499999998877766544 45668887643
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.89 E-value=1.6e-22 Score=183.33 Aligned_cols=176 Identities=14% Similarity=0.190 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHH
Q 018408 90 LIASMSNFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAI 169 (356)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~ 169 (356)
+.+++..+..++....+.+.+|.+.+++|. +..+.+++.+.+.+++.++.++.|+++||+|||+++.++.++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNV--REGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--TTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 445666677777888888889999999998 566799999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHH
Q 018408 170 ISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (356)
Q Consensus 170 ~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~ 249 (356)
+.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ |++.|++
T Consensus 81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~ 159 (375)
T 2gfp_A 81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988767 9999998
Q ss_pred hHHHHHHHHH-HhhcccCCh
Q 018408 250 ASLPGFILAL-GMQFTVESP 268 (356)
Q Consensus 250 ~~~~~~~~~~-~~~~~~e~p 268 (356)
.++..++..+ ..+++||++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHCcccC
Confidence 8877776665 445577764
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.81 E-value=8.1e-19 Score=164.73 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=140.6
Q ss_pred HHHHHHHhhhhcchhhH-HHHHHH-----hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhh-hchhHHHHHhHHHHHH
Q 018408 94 MSNFLFGYHIGVMNGPI-VSIAKE-----LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADK-LGCRRTFQIDTIPLIL 166 (356)
Q Consensus 94 ~~~~~~~~~~~~~~~~~-~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~i 166 (356)
+..+...+........+ +++.++ +|. +..+.+++.+.+.+++.++.+++|+++|| +|||+++.++.++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~ 97 (491)
T 4aps_A 20 MTEMWERFSYYGMRAILLYYMWFLISTGDLHI--TRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIML 97 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 33333334333333333 455555 788 67779999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCc--cchhHHHhHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408 167 GAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKY--RGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWR 244 (356)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~--r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~ 244 (356)
+.++++++++++.++++|++.|++.+...+....+++|++|+++ |+.++++++.+..+|..++|.+++.+.+..+ |+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-~~ 176 (491)
T 4aps_A 98 GHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG-YH 176 (491)
T ss_dssp HHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh-HH
Confidence 99999999999999999999999999999999999999999988 7778888999999999999999999988777 99
Q ss_pred HHHHHhHHHHHHHHHHhh
Q 018408 245 TMLYIASLPGFILALGMQ 262 (356)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~ 262 (356)
+.|++.++..++..+..+
T Consensus 177 ~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 177 VAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998777666655443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.75 E-value=2.5e-17 Score=155.87 Aligned_cols=164 Identities=15% Similarity=0.106 Sum_probs=139.1
Q ss_pred HHHHhhhhcchhhH-HHHHHHhC------CCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh-chhHHHHHhHHHHHHHH
Q 018408 97 FLFGYHIGVMNGPI-VSIAKELG------FEGNPILEGLVVSIFIAGAFVGSISSGSLADKL-GCRRTFQIDTIPLILGA 168 (356)
Q Consensus 97 ~~~~~~~~~~~~~~-~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~ 168 (356)
+...+......+.+ +++.+++| + +..+.+++.+++.+++.++.+++|+++||+ |||+++.++.++.+++.
T Consensus 22 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~ 99 (524)
T 2xut_A 22 ACERFSFYGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH 99 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33333333333444 45667788 7 555699999999999999999999999999 99999999999999999
Q ss_pred HHHHHhh-hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHH---hHHHHHHHHHHHHHhhhccCCCCchhH
Q 018408 169 IISAQAH-SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTL---CQVGTCLGIITSLFLGIPAEDDPHWWR 244 (356)
Q Consensus 169 ~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~---~~~~~~~g~~~~~~i~~~l~~~~~~w~ 244 (356)
++.++++ +++.++++|++.|++.+...+....++.|++|+++|++..+. ++.+..+|.+++|.+++.+.+..+ |+
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~ 178 (524)
T 2xut_A 100 AFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AA 178 (524)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HH
T ss_pred HHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HH
Confidence 9999998 999999999999999999999999999999999999877666 889999999999999999888777 99
Q ss_pred HHHHHhHHHHHHHHHHhhc
Q 018408 245 TMLYIASLPGFILALGMQF 263 (356)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~ 263 (356)
+.|++.++..++..+..++
T Consensus 179 ~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 179 VAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999988777666555444
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.60 E-value=2.8e-14 Score=132.04 Aligned_cols=172 Identities=14% Similarity=0.094 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH-hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhh--chhHHHHHhHHHHH-
Q 018408 90 LIASMSNFLFGYHIGVMNGPIVSIAKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKL--GCRRTFQIDTIPLI- 165 (356)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~- 165 (356)
+...+..+.............|.+.++ +|. +..+.+++.+...++..++.++.|+++||+ |||+.+.++.++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHF--ALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 334444444444444455566666555 787 667789999999999999999999999999 99999888777766
Q ss_pred HHHHHHHHh--hhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHH-HHHHHHHhhhccCCCCch
Q 018408 166 LGAIISAQA--HSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCL-GIITSLFLGIPAEDDPHW 242 (356)
Q Consensus 166 i~~~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~-g~~~~~~i~~~l~~~~~~ 242 (356)
++.++..+. .+.+.+++..++.|++.+...+....++.|.+|+++||+++++.+....+ |..++|.+.+.+.+..+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g- 411 (451)
T 1pw4_A 333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG- 411 (451)
T ss_dssp HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 666555555 36677777888899998888888899999999999999999999999999 99999999999998888
Q ss_pred hHHHHHHhHHHHHHHHHHhhcc
Q 018408 243 WRTMLYIASLPGFILALGMQFT 264 (356)
Q Consensus 243 w~~~~~~~~~~~~~~~~~~~~~ 264 (356)
|+..|++.++..++..+..+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888777776655543
No 8
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.55 E-value=2.3e-14 Score=134.24 Aligned_cols=170 Identities=17% Similarity=0.071 Sum_probs=117.1
Q ss_pred HHHHHhhhhcchhhHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhh
Q 018408 96 NFLFGYHIGVMNGPIVSIAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAH 175 (356)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~ 175 (356)
.+.............+.+.+..+. +............+...++.++.+++.||+|||+.++.+....+++.+..+...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~ 363 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGA--STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 363 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHH
Confidence 333444444555566778888776 444455666777788899999999999999999999998888888776655431
Q ss_pred -----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc-----hhHH
Q 018408 176 -----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-----WWRT 245 (356)
Q Consensus 176 -----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-----~w~~ 245 (356)
+...++...+..+....+..+..+.+.+|.+|++.|++++|+......+|+++++.+.+.+.+... ++.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~ 443 (491)
T 4gc0_A 364 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGF 443 (491)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCH
T ss_pred hcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 222222222222222333456778899999999999999999999999999988887766544211 1445
Q ss_pred HHHHhHHHHHHHHH-HhhcccCC
Q 018408 246 MLYIASLPGFILAL-GMQFTVES 267 (356)
Q Consensus 246 ~~~~~~~~~~~~~~-~~~~~~e~ 267 (356)
.|++.++++++..+ .++++|||
T Consensus 444 ~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 444 SYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHheecCC
Confidence 66666666665554 56779999
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.52 E-value=1.3e-15 Score=140.05 Aligned_cols=167 Identities=13% Similarity=0.056 Sum_probs=107.5
Q ss_pred HHHHhhhhcchhhHHH-HHHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHH---H
Q 018408 97 FLFGYHIGVMNGPIVS-IAKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIIS---A 172 (356)
Q Consensus 97 ~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~ 172 (356)
+..........+.+|. +.+++|+ +..+.+++.+.+.+++.++++++|+++||+|||++++++..+.+++.... .
T Consensus 17 ~~~~~~~~~~~~~~~~~l~~~~g~--s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~ 94 (417)
T 2cfq_A 17 FFYFFIMGAYFPFFPIWLHDINHI--SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94 (417)
T ss_dssp HHHHHHHHHHTTTHHHHHHTTTCC--CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444555655 4556888 45558999999999999999999999999999999998877765532211 2
Q ss_pred HhhhH-HHHHHHHHHHHhhhhhhhhHHHHHHHhhcCC--CccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHH
Q 018408 173 QAHSL-DEMLWGRFLVGLGIGVNTVLVPIYISEVAPT--KYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYI 249 (356)
Q Consensus 173 ~~~~~-~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~--~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~ 249 (356)
+.+.. ..++..+++.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+ |++.|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~-~~~~f~~ 172 (417)
T 2cfq_A 95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN-NQFVFWL 172 (417)
T ss_dssp HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC-SHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc-hhHHHHH
Confidence 22211 1123445555554444433333333333332 356777777777788888899998888765 34 8999988
Q ss_pred hHHHHHHHHHHhhcccCC
Q 018408 250 ASLPGFILALGMQFTVES 267 (356)
Q Consensus 250 ~~~~~~~~~~~~~~~~e~ 267 (356)
.++..++..+..++.+|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~ 190 (417)
T 2cfq_A 173 GSGCALILAVLLFFAKTD 190 (417)
T ss_dssp TTTTTTTHHHHSCSSCCC
T ss_pred HHHHHHHHHHHHHHcCcc
Confidence 776655555555444443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.51 E-value=1.3e-13 Score=127.19 Aligned_cols=155 Identities=11% Similarity=-0.028 Sum_probs=121.8
Q ss_pred hcchhhHHHH-HHH-hCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHH
Q 018408 104 GVMNGPIVSI-AKE-LGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEML 181 (356)
Q Consensus 104 ~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~ 181 (356)
.......|.+ .++ +|. +..+.+++.+.+.++..++.++.|+++||+|||+.+.++.++.+++.++..+.++...++
T Consensus 275 ~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGM--TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI 352 (438)
T ss_dssp HHHHHHHHHHHHHHSTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHhhhccCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3334445544 444 588 667789999999999999999999999999999999999999999888888887776554
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHHh
Q 018408 182 WGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALGM 261 (356)
Q Consensus 182 ~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~~ 261 (356)
. .++.|++.+...+....+..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..++++..|++.++..++..+..
T Consensus 353 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 429 (438)
T 3o7q_A 353 A-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFA 429 (438)
T ss_dssp H-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 4 48889999999999999999999976 888888776 55689999999999988876547777777655544444433
Q ss_pred hc
Q 018408 262 QF 263 (356)
Q Consensus 262 ~~ 263 (356)
++
T Consensus 430 ~~ 431 (438)
T 3o7q_A 430 RF 431 (438)
T ss_dssp TT
T ss_pred HH
Confidence 33
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.49 E-value=1.2e-13 Score=126.78 Aligned_cols=143 Identities=12% Similarity=0.005 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 018408 125 LEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIPLILGAIISAQAHSLDEMLWGRFLVGLGIGVNTVLVPIYISE 204 (356)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e 204 (356)
..++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+++|
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 339 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777778888999999999999999999998888888877777777777777777788888877777777889999
Q ss_pred hcCCCccchhHHH-hHHHHHHHHHHHHHhhhccCCCCchhHHHHHHhHHHHHHHHHH-hhcccCCh
Q 018408 205 VAPTKYRGSLGTL-CQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIASLPGFILALG-MQFTVESP 268 (356)
Q Consensus 205 ~~p~~~r~~~~~~-~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~e~p 268 (356)
.+|++.||++.++ ++....+|..++|.+++.+.+..+ +...|.+.+++.+++.+. +++.+|++
T Consensus 340 ~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999998 588889999999999999888766 888888887777776654 34466654
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.39 E-value=4e-12 Score=119.01 Aligned_cols=154 Identities=11% Similarity=-0.022 Sum_probs=114.8
Q ss_pred chhhHHHHH-HHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHH-----HhHHHHHHHHHHHHHhh----
Q 018408 106 MNGPIVSIA-KELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQ-----IDTIPLILGAIISAQAH---- 175 (356)
Q Consensus 106 ~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~i~~~~~~~~~---- 175 (356)
....++.+. +.++.+. ...+++.+...++..++.++.|++.||+|||+... ++.++.+++.++.....
T Consensus 302 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (491)
T 4aps_A 302 GSVVLATFAAERVDSSW--FPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYG 379 (491)
T ss_dssp GGTHHHHHHHHSCCCSS--SCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCC
T ss_pred ccHHHHHHHHHHhccCc--cCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444 4455532 33567777888888899999999999999986554 66677777666655543
Q ss_pred -----hHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCchhHHHHHHh
Q 018408 176 -----SLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHWWRTMLYIA 250 (356)
Q Consensus 176 -----~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~w~~~~~~~ 250 (356)
+.+.+++..++.|++.+...+....++.|.+|++.|++++|+.+....+|..+++.+.+.+.+. + +.+.|++.
T Consensus 380 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~-~~~~~~~~ 457 (491)
T 4aps_A 380 TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-S-EVAYFSYF 457 (491)
T ss_dssp CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-S-TTHHHHHT
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-HHHHHHHH
Confidence 6667777888999999998899999999999999999999999999999999999999888765 3 55667776
Q ss_pred HHHHHHHHHHhhc
Q 018408 251 SLPGFILALGMQF 263 (356)
Q Consensus 251 ~~~~~~~~~~~~~ 263 (356)
++..++..+..++
T Consensus 458 ~~~~~~~~~~~~~ 470 (491)
T 4aps_A 458 GLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655544433
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.14 E-value=1.5e-11 Score=110.96 Aligned_cols=156 Identities=16% Similarity=0.066 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhhhhcchhhHHHH-HHHhCCCCChhHHHHHHHHHHHHHHHHHHhHHhhhhhhchhHHHHHhHHH-HHH
Q 018408 89 VLIASMSNFLFGYHIGVMNGPIVSI-AKELGFEGNPILEGLVVSIFIAGAFVGSISSGSLADKLGCRRTFQIDTIP-LIL 166 (356)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~i 166 (356)
++...+..+.............|.+ .+.+|. +..+.+++.+...++..++.++.+++.||+|++. ..+..+ ..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~ 276 (375)
T 2gfp_A 201 FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGL--SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHH--HHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3334444444444444444444444 444777 5666899999999999999999999999999833 223322 222
Q ss_pred HHH--HHHH--hhhHHHHHHHHHHHHhhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCch
Q 018408 167 GAI--ISAQ--AHSLDEMLWGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPHW 242 (356)
Q Consensus 167 ~~~--~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~ 242 (356)
+.. .... .++.+.+++..++.|++.+...+....++.|.+| ++||++.++.+....+|..+++.+.+.+.+..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~- 354 (375)
T 2gfp_A 277 GLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ- 354 (375)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH-
T ss_pred HHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc-
Confidence 222 2222 2366777778889999999999999999999998 889999999999999999999998888766544
Q ss_pred hHHHHHHh
Q 018408 243 WRTMLYIA 250 (356)
Q Consensus 243 w~~~~~~~ 250 (356)
|...+++.
T Consensus 355 ~~~~~~~~ 362 (375)
T 2gfp_A 355 GSLGLLMT 362 (375)
T ss_dssp HHHHHHHH
T ss_pred ccHHHHHH
Confidence 66666553
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.93 E-value=4.6e-09 Score=99.00 Aligned_cols=138 Identities=9% Similarity=0.058 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhh----hhhch----hHHHHHhHHHHHHHHHHHHHh---------hhHHHHHHHHHHHH
Q 018408 126 EGLVVSIFIAGAFVGSISSGSLA----DKLGC----RRTFQIDTIPLILGAIISAQA---------HSLDEMLWGRFLVG 188 (356)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~~~l~G 188 (356)
.+++.....++..++.++.+++. +|.|+ ++.+.++.++.+++.++.++. .+.+.+++..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 45555555555666666666654 44443 245667777777777766653 25667777889999
Q ss_pred hhhhhhhhHHHHHHHhhcCCCccchhHHHhHHHHHHHHHHHHHhhhccCCCCc-hh---------HHHHHHhHHHHHHHH
Q 018408 189 LGIGVNTVLVPIYISEVAPTKYRGSLGTLCQVGTCLGIITSLFLGIPAEDDPH-WW---------RTMLYIASLPGFILA 258 (356)
Q Consensus 189 ~~~g~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~-~w---------~~~~~~~~~~~~~~~ 258 (356)
++.+...+....++.|.+|++.||+++|++++...+|..+++.+.+.+.+..+ +| +..|++.+++.++..
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAA 496 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998876421 13 333566665555555
Q ss_pred HHhhc
Q 018408 259 LGMQF 263 (356)
Q Consensus 259 ~~~~~ 263 (356)
+..++
T Consensus 497 ~~~~~ 501 (524)
T 2xut_A 497 IVFAL 501 (524)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 44433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=63.23 E-value=3.9 Score=19.39 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.3
Q ss_pred hHHhhhhhhchhHH
Q 018408 143 SSGSLADKLGCRRT 156 (356)
Q Consensus 143 ~~g~l~dr~Grr~~ 156 (356)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36788999999875
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=34.77 E-value=94 Score=24.43 Aligned_cols=25 Identities=12% Similarity=0.030 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhHHhhhhhhchh
Q 018408 130 VSIFIAGAFVGSISSGSLADKLGCR 154 (356)
Q Consensus 130 ~~~~~~~~~~~~~~~g~l~dr~Grr 154 (356)
+.-|.+|+.++..+.|++.+|..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567888889999999999987544
No 17
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=28.73 E-value=58 Score=17.04 Aligned_cols=11 Identities=36% Similarity=0.404 Sum_probs=6.5
Q ss_pred HHhhcccCChH
Q 018408 259 LGMQFTVESPR 269 (356)
Q Consensus 259 ~~~~~~~e~p~ 269 (356)
....+++|.|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 33455678774
Done!