BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018409
         (356 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
           Promotes E3 Ligase Activation Via Dimerization
          Length = 345

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 308 ACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356
            CK C  +  SVV +PC HL VC EC   ++ CP+C  +   +V  FLS
Sbjct: 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345


>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
 pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
          Length = 74

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 309 CKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356
           CK C  R  ++V +PC HL  C +C   V  CP+C+ V     ++F+S
Sbjct: 27  CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 74


>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
 pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
          Length = 74

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 309 CKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356
           CK C  +  S+V +PC HL VC +C   ++ CP+C +    +V  FLS
Sbjct: 27  CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 74


>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
           Iap Repeat-Containing Protein 4 From Homo Sapiens
          Length = 75

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 309 CKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356
           CK C  R  ++V +PC HL  C +C   V  CP+C+ V     ++F+S
Sbjct: 28  CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75


>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
 pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
          Length = 74

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 26/48 (54%)

Query: 309 CKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356
           CK C  R  ++V +PC HL  C +C   V  CP+C+ V     ++ +S
Sbjct: 27  CKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74


>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
 pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
          Length = 62

 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 308 ACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356
            CK C  R  S+V +PC HL VC EC   +Q CP+C     S V  FLS
Sbjct: 15  TCKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVRTFLS 62


>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
           Growth Regulator With Ring Finger Domain 1 Protein
          Length = 68

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 309 CKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLC 343
           C  C+    + VLLPCRH C+C  C +  Q CP+C
Sbjct: 18  CVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMC 52


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,656,598
Number of Sequences: 62578
Number of extensions: 164517
Number of successful extensions: 541
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 16
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)