Query 018409
Match_columns 356
No_of_seqs 228 out of 1092
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 08:46:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 1.3E-39 2.9E-44 301.2 11.6 192 158-355 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.2 2.9E-12 6.3E-17 126.6 2.6 52 304-355 288-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 98.9 3.4E-10 7.3E-15 82.3 2.0 43 307-349 3-49 (50)
4 KOG4172 Predicted E3 ubiquitin 98.8 1.6E-10 3.4E-15 87.4 -4.2 50 307-356 8-62 (62)
5 KOG4275 Predicted E3 ubiquitin 98.7 1.3E-09 2.8E-14 105.9 -1.7 51 306-356 300-350 (350)
6 KOG1571 Predicted E3 ubiquitin 98.6 5.8E-09 1.3E-13 103.6 0.4 51 306-356 305-355 (355)
7 KOG0978 E3 ubiquitin ligase in 98.0 6.4E-05 1.4E-09 81.0 12.1 123 203-349 563-690 (698)
8 KOG1785 Tyrosine kinase negati 97.4 4.7E-05 1E-09 77.4 1.0 51 303-354 366-422 (563)
9 PF14634 zf-RING_5: zinc-RING 97.4 0.0001 2.2E-09 52.4 2.1 36 309-345 2-44 (44)
10 KOG0823 Predicted E3 ubiquitin 97.3 0.0002 4.3E-09 68.1 3.6 50 304-354 45-103 (230)
11 KOG0317 Predicted E3 ubiquitin 97.2 0.00019 4E-09 70.3 2.9 49 303-352 236-288 (293)
12 PLN03208 E3 ubiquitin-protein 97.2 0.00029 6.3E-09 65.6 3.9 48 306-354 18-87 (193)
13 PF13923 zf-C3HC4_2: Zinc fing 97.1 0.00024 5.2E-09 49.1 1.8 34 309-343 1-39 (39)
14 PHA02929 N1R/p28-like protein; 97.1 0.00046 9.9E-09 66.1 4.0 47 306-353 174-232 (238)
15 smart00184 RING Ring finger. E 97.0 0.00054 1.2E-08 44.6 2.3 34 309-343 1-39 (39)
16 PF14447 Prok-RING_4: Prokaryo 96.9 0.00042 9.1E-09 52.6 1.7 42 307-349 8-51 (55)
17 cd00162 RING RING-finger (Real 96.8 0.001 2.3E-08 44.8 2.8 39 308-347 1-45 (45)
18 PF13639 zf-RING_2: Ring finge 96.6 0.0011 2.4E-08 46.7 1.8 36 308-344 2-44 (44)
19 PF00097 zf-C3HC4: Zinc finger 96.2 0.0028 6.1E-08 43.6 1.8 34 309-343 1-41 (41)
20 KOG0320 Predicted E3 ubiquitin 96.1 0.002 4.4E-08 59.4 1.0 49 306-355 131-187 (187)
21 KOG2164 Predicted E3 ubiquitin 96.0 0.004 8.6E-08 65.1 2.4 49 305-354 185-244 (513)
22 TIGR00599 rad18 DNA repair pro 95.9 0.0041 9E-08 63.6 2.3 44 305-349 25-72 (397)
23 COG5574 PEX10 RING-finger-cont 95.7 0.0061 1.3E-07 59.3 2.3 43 304-347 213-261 (271)
24 KOG2177 Predicted E3 ubiquitin 95.7 0.0036 7.8E-08 56.1 0.6 39 306-345 13-55 (386)
25 PHA02926 zinc finger-like prot 95.5 0.0051 1.1E-07 58.8 0.9 45 306-351 170-233 (242)
26 PF15227 zf-C3HC4_4: zinc fing 95.2 0.009 1.9E-07 42.5 1.2 34 309-343 1-42 (42)
27 smart00504 Ubox Modified RING 94.9 0.021 4.6E-07 42.3 2.5 42 307-349 2-47 (63)
28 COG5236 Uncharacterized conser 94.7 0.019 4.2E-07 58.0 2.5 47 304-351 59-111 (493)
29 PF13445 zf-RING_UBOX: RING-ty 94.6 0.014 3E-07 42.0 1.0 27 309-337 1-31 (43)
30 COG5432 RAD18 RING-finger-cont 94.2 0.025 5.4E-07 56.1 1.8 41 306-347 25-69 (391)
31 KOG2879 Predicted E3 ubiquitin 94.0 0.044 9.6E-07 53.8 3.1 45 303-348 236-287 (298)
32 KOG4692 Predicted E3 ubiquitin 93.9 0.026 5.6E-07 57.2 1.5 44 304-348 420-467 (489)
33 COG5540 RING-finger-containing 93.7 0.057 1.2E-06 53.9 3.2 42 306-348 323-372 (374)
34 KOG0287 Postreplication repair 93.0 0.034 7.3E-07 56.2 0.5 44 306-350 23-70 (442)
35 KOG0802 E3 ubiquitin ligase [P 92.0 0.067 1.4E-06 56.5 1.2 41 306-347 291-340 (543)
36 COG5243 HRD1 HRD ubiquitin lig 90.3 0.17 3.6E-06 51.9 2.1 44 303-347 284-344 (491)
37 PF04641 Rtf2: Rtf2 RING-finge 90.0 0.28 6.1E-06 47.2 3.4 46 304-350 111-163 (260)
38 PF14835 zf-RING_6: zf-RING of 90.0 0.18 3.9E-06 39.7 1.6 41 306-347 7-50 (65)
39 PF12678 zf-rbx1: RING-H2 zinc 89.6 0.26 5.6E-06 38.8 2.3 27 317-344 43-73 (73)
40 KOG2113 Predicted RNA binding 89.3 0.31 6.7E-06 49.0 3.1 48 306-353 343-392 (394)
41 KOG1814 Predicted E3 ubiquitin 87.9 0.27 5.9E-06 50.8 1.7 42 306-348 184-240 (445)
42 PF12240 Angiomotin_C: Angiomo 87.0 17 0.00038 34.5 12.9 83 166-257 66-166 (205)
43 PF15619 Lebercilin: Ciliary p 86.9 27 0.00058 32.7 14.2 93 161-259 50-150 (194)
44 KOG4628 Predicted E3 ubiquitin 86.6 0.47 1E-05 48.1 2.5 43 307-350 230-280 (348)
45 PF09726 Macoilin: Transmembra 86.6 23 0.0005 39.2 15.5 52 206-257 545-596 (697)
46 PF00038 Filament: Intermediat 85.7 36 0.00077 32.9 16.8 95 163-261 182-282 (312)
47 KOG4159 Predicted E3 ubiquitin 85.2 0.41 8.9E-06 49.3 1.4 45 304-349 82-130 (398)
48 KOG1039 Predicted E3 ubiquitin 85.1 0.47 1E-05 48.0 1.7 46 305-351 160-224 (344)
49 PF04216 FdhE: Protein involve 85.0 1.8 3.9E-05 42.1 5.7 48 306-354 172-228 (290)
50 KOG0804 Cytoplasmic Zn-finger 84.2 45 0.00097 35.4 15.4 103 160-262 327-449 (493)
51 KOG3002 Zn finger protein [Gen 83.4 0.66 1.4E-05 46.1 1.9 41 306-348 48-91 (299)
52 KOG1813 Predicted E3 ubiquitin 83.4 0.43 9.3E-06 47.5 0.6 47 306-353 241-291 (313)
53 PF04710 Pellino: Pellino; In 81.4 0.46 1E-05 48.9 0.0 41 315-355 356-411 (416)
54 KOG1103 Predicted coiled-coil 81.0 33 0.00071 35.6 12.8 40 155-194 136-185 (561)
55 KOG3039 Uncharacterized conser 80.6 1.2 2.6E-05 43.6 2.5 43 306-349 221-271 (303)
56 COG5152 Uncharacterized conser 80.4 0.55 1.2E-05 44.6 0.1 46 307-353 197-246 (259)
57 KOG2932 E3 ubiquitin ligase in 79.9 0.88 1.9E-05 45.8 1.3 40 307-348 91-134 (389)
58 KOG3842 Adaptor protein Pellin 78.9 1.8 3.8E-05 43.8 3.1 52 303-354 338-423 (429)
59 PF04564 U-box: U-box domain; 76.9 2.5 5.4E-05 33.0 2.8 44 305-349 3-51 (73)
60 KOG0828 Predicted E3 ubiquitin 75.7 1.2 2.5E-05 47.3 0.9 44 305-349 570-635 (636)
61 KOG3091 Nuclear pore complex, 75.0 21 0.00045 38.1 9.7 21 214-234 377-397 (508)
62 KOG0971 Microtubule-associated 73.8 56 0.0012 37.6 13.0 49 212-260 447-502 (1243)
63 KOG0825 PHD Zn-finger protein 73.6 0.99 2.1E-05 50.2 -0.3 44 307-351 124-174 (1134)
64 KOG0288 WD40 repeat protein Ti 72.9 76 0.0016 33.5 12.9 70 161-234 2-76 (459)
65 PF13815 Dzip-like_N: Iguana/D 72.6 17 0.00036 31.0 7.1 42 195-236 76-117 (118)
66 PF11559 ADIP: Afadin- and alp 72.5 43 0.00092 29.3 9.8 56 204-259 57-112 (151)
67 PF01166 TSC22: TSC-22/dip/bun 72.0 5 0.00011 31.1 3.3 31 213-243 14-44 (59)
68 PF00804 Syntaxin: Syntaxin; 71.8 46 0.001 26.1 9.9 84 175-260 13-102 (103)
69 PF14362 DUF4407: Domain of un 71.3 1E+02 0.0022 29.9 13.9 58 166-234 106-163 (301)
70 KOG3859 Septins (P-loop GTPase 70.3 48 0.001 33.7 10.5 21 222-242 379-399 (406)
71 KOG1001 Helicase-like transcri 69.6 2 4.2E-05 47.2 0.9 40 307-348 455-500 (674)
72 PF11180 DUF2968: Protein of u 68.6 1.1E+02 0.0024 29.0 12.0 28 156-183 102-130 (192)
73 PF12329 TMF_DNA_bd: TATA elem 68.2 59 0.0013 25.8 9.2 16 205-220 4-19 (74)
74 KOG2113 Predicted RNA binding 67.3 2 4.4E-05 43.3 0.4 48 306-353 136-188 (394)
75 KOG0980 Actin-binding protein 66.3 2.2E+02 0.0048 32.8 15.5 53 206-258 452-504 (980)
76 KOG4673 Transcription factor T 66.0 92 0.002 35.0 12.3 53 202-257 473-525 (961)
77 PF12126 DUF3583: Protein of u 64.9 1.6E+02 0.0036 29.8 13.8 68 159-231 25-99 (324)
78 TIGR01837 PHA_granule_1 poly(h 64.7 83 0.0018 27.0 9.7 66 168-233 44-116 (118)
79 smart00338 BRLZ basic region l 63.9 61 0.0013 24.5 9.2 32 208-239 28-59 (65)
80 KOG4657 Uncharacterized conser 63.1 1.6E+02 0.0034 28.9 15.6 90 150-242 12-101 (246)
81 KOG0612 Rho-associated, coiled 62.2 1.6E+02 0.0035 35.0 13.9 90 168-262 464-553 (1317)
82 PF03854 zf-P11: P-11 zinc fin 62.1 3.2 7E-05 31.1 0.5 43 307-351 3-49 (50)
83 PF05290 Baculo_IE-1: Baculovi 62.0 3 6.6E-05 37.3 0.4 44 307-351 81-135 (140)
84 PRK10884 SH3 domain-containing 61.9 75 0.0016 30.0 9.7 32 206-237 125-156 (206)
85 PF09731 Mitofilin: Mitochondr 61.7 2.2E+02 0.0048 30.2 16.0 27 222-248 380-406 (582)
86 COG5220 TFB3 Cdk activating ki 61.7 2.3 5E-05 41.6 -0.4 39 306-345 10-61 (314)
87 PF10205 KLRAQ: Predicted coil 61.4 1.1E+02 0.0023 26.4 9.5 61 174-236 10-70 (102)
88 COG3074 Uncharacterized protei 60.5 82 0.0018 25.5 8.2 31 214-244 40-70 (79)
89 PF11544 Spc42p: Spindle pole 60.5 86 0.0019 25.6 8.4 37 204-240 10-46 (76)
90 KOG4797 Transcriptional regula 60.2 44 0.00096 29.1 7.1 32 213-244 67-98 (123)
91 PF15254 CCDC14: Coiled-coil d 60.0 84 0.0018 35.6 10.9 59 176-234 494-557 (861)
92 KOG0977 Nuclear envelope prote 59.6 1.5E+02 0.0033 32.2 12.5 68 176-243 113-186 (546)
93 PF07412 Geminin: Geminin; In 59.2 45 0.00097 31.7 7.6 48 179-227 106-153 (200)
94 PF10168 Nup88: Nuclear pore c 58.7 2.3E+02 0.0051 31.6 14.2 50 214-263 601-661 (717)
95 PF07888 CALCOCO1: Calcium bin 58.7 2.8E+02 0.006 30.3 14.9 39 210-248 203-241 (546)
96 COG4985 ABC-type phosphate tra 58.5 53 0.0012 32.3 8.1 19 155-173 158-176 (289)
97 PF06005 DUF904: Protein of un 57.6 96 0.0021 24.7 11.5 23 220-242 39-61 (72)
98 TIGR03752 conj_TIGR03752 integ 57.2 1E+02 0.0022 32.9 10.6 33 158-191 63-95 (472)
99 KOG4421 Uncharacterized conser 57.1 1.4E+02 0.0031 31.3 11.4 50 172-222 126-175 (637)
100 PRK00888 ftsB cell division pr 56.8 43 0.00094 28.3 6.5 36 206-241 27-62 (105)
101 PF15397 DUF4618: Domain of un 56.4 2.1E+02 0.0045 28.2 12.6 80 165-244 135-224 (258)
102 PF00769 ERM: Ezrin/radixin/mo 55.7 46 0.00099 32.1 7.3 48 206-253 12-66 (246)
103 PF04380 BMFP: Membrane fusoge 55.5 86 0.0019 25.1 7.7 20 214-233 58-77 (79)
104 KOG0311 Predicted E3 ubiquitin 55.5 1.5 3.3E-05 44.7 -2.9 44 305-349 42-91 (381)
105 smart00744 RINGv The RING-vari 54.9 10 0.00022 27.8 2.1 36 308-344 1-49 (49)
106 PF15066 CAGE1: Cancer-associa 54.7 3E+02 0.0065 29.6 13.4 61 204-264 451-526 (527)
107 KOG1002 Nucleotide excision re 54.3 3.2 6.9E-05 44.6 -0.9 41 306-347 536-585 (791)
108 COG2433 Uncharacterized conser 53.9 1.1E+02 0.0023 33.8 10.3 12 106-117 332-343 (652)
109 PRK15422 septal ring assembly 53.7 1.3E+02 0.0027 24.8 9.4 30 214-243 40-69 (79)
110 KOG0163 Myosin class VI heavy 53.4 3.4E+02 0.0074 31.3 14.0 27 211-237 954-980 (1259)
111 PRK04863 mukB cell division pr 52.9 4.6E+02 0.0099 32.0 16.1 33 208-240 364-396 (1486)
112 PF13935 Ead_Ea22: Ead/Ea22-li 52.6 1.2E+02 0.0026 26.6 8.9 71 147-226 65-139 (139)
113 TIGR01562 FdhE formate dehydro 52.4 61 0.0013 32.5 7.8 42 306-347 184-234 (305)
114 smart00338 BRLZ basic region l 51.4 1E+02 0.0022 23.2 8.1 37 221-257 27-63 (65)
115 PF08702 Fib_alpha: Fibrinogen 51.3 1.8E+02 0.0039 26.0 11.7 98 156-259 20-129 (146)
116 KOG4807 F-actin binding protei 50.7 3.4E+02 0.0073 28.9 14.2 78 162-239 364-447 (593)
117 COG1592 Rubrerythrin [Energy p 50.5 2.1E+02 0.0045 26.5 10.5 31 306-352 134-164 (166)
118 KOG4571 Activating transcripti 50.5 77 0.0017 31.8 8.0 30 213-242 255-284 (294)
119 PRK00888 ftsB cell division pr 50.4 59 0.0013 27.4 6.4 30 206-235 34-63 (105)
120 PF11500 Cut12: Spindle pole b 50.2 1.6E+02 0.0034 27.0 9.4 26 209-234 101-126 (152)
121 PF06785 UPF0242: Uncharacteri 49.7 3.2E+02 0.0069 28.4 15.3 77 161-238 92-187 (401)
122 PF13747 DUF4164: Domain of un 49.4 1.5E+02 0.0032 24.4 11.7 39 209-247 35-73 (89)
123 KOG3564 GTPase-activating prot 48.3 1.7E+02 0.0037 31.6 10.5 74 177-259 29-102 (604)
124 PF10367 Vps39_2: Vacuolar sor 46.8 11 0.00025 30.1 1.5 28 306-334 78-107 (109)
125 PF10186 Atg14: UV radiation r 46.6 2.5E+02 0.0055 26.3 14.5 12 164-175 37-48 (302)
126 PF05121 GvpK: Gas vesicle pro 46.2 59 0.0013 27.2 5.5 38 198-235 27-67 (88)
127 smart00502 BBC B-Box C-termina 45.8 1.6E+02 0.0034 23.7 11.1 46 159-208 29-74 (127)
128 PF12999 PRKCSH-like: Glucosid 45.7 1.1E+02 0.0025 28.4 7.9 27 211-237 144-170 (176)
129 PRK09039 hypothetical protein; 45.4 3.4E+02 0.0073 27.4 15.3 49 215-263 139-187 (343)
130 PF10272 Tmpp129: Putative tra 45.3 20 0.00043 36.8 3.2 34 303-347 300-350 (358)
131 KOG0241 Kinesin-like protein [ 45.2 89 0.0019 36.5 8.3 46 195-240 378-424 (1714)
132 PF13863 DUF4200: Domain of un 45.1 1.8E+02 0.004 24.2 11.7 29 210-238 78-106 (126)
133 PF14570 zf-RING_4: RING/Ubox 44.9 10 0.00022 28.2 0.8 24 323-347 19-47 (48)
134 PRK11637 AmiB activator; Provi 44.8 3.6E+02 0.0079 27.6 14.3 28 207-234 90-117 (428)
135 PRK10884 SH3 domain-containing 44.7 2.8E+02 0.006 26.2 12.9 47 208-254 120-166 (206)
136 PF14193 DUF4315: Domain of un 44.0 48 0.001 27.2 4.7 25 210-234 5-29 (83)
137 PF15070 GOLGA2L5: Putative go 43.9 4.8E+02 0.01 28.8 14.3 85 161-248 163-255 (617)
138 PHA03415 putative internal vir 43.5 82 0.0018 35.9 7.6 87 156-242 298-397 (1019)
139 PRK11448 hsdR type I restricti 43.4 96 0.0021 36.4 8.6 22 217-238 188-209 (1123)
140 KOG0717 Molecular chaperone (D 43.2 4.6E+02 0.0099 28.3 13.0 37 165-201 178-214 (508)
141 PF04799 Fzo_mitofusin: fzo-li 43.2 1.8E+02 0.0039 27.1 8.7 77 172-259 79-162 (171)
142 KOG3799 Rab3 effector RIM1 and 42.9 1E+02 0.0023 28.0 6.9 36 308-346 67-116 (169)
143 KOG0994 Extracellular matrix g 42.7 6.3E+02 0.014 30.6 14.4 38 211-248 1610-1647(1758)
144 PF07111 HCR: Alpha helical co 42.5 5.5E+02 0.012 29.0 14.8 25 210-234 159-183 (739)
145 KOG4398 Predicted coiled-coil 42.3 2.7E+02 0.0058 28.2 10.3 77 170-260 10-88 (359)
146 KOG1734 Predicted RING-contain 41.8 16 0.00035 36.5 1.8 46 303-349 221-282 (328)
147 PRK11637 AmiB activator; Provi 41.2 4.1E+02 0.0089 27.2 12.5 55 208-262 77-131 (428)
148 KOG2483 Upstream transcription 41.0 1.2E+02 0.0025 29.5 7.5 30 206-235 112-141 (232)
149 cd00729 rubredoxin_SM Rubredox 41.0 7.6 0.00017 26.5 -0.4 16 337-352 18-33 (34)
150 PF14775 NYD-SP28_assoc: Sperm 40.8 1.7E+02 0.0036 22.5 7.4 49 174-231 10-58 (60)
151 PF14257 DUF4349: Domain of un 40.6 89 0.0019 29.7 6.7 25 206-230 169-193 (262)
152 PF09403 FadA: Adhesion protei 40.6 2.6E+02 0.0056 24.7 12.3 61 157-237 23-83 (126)
153 PF14916 CCDC92: Coiled-coil d 39.9 86 0.0019 24.4 5.2 28 199-226 14-41 (60)
154 PF14931 IFT20: Intraflagellar 39.9 2.6E+02 0.0055 24.4 10.6 22 230-251 97-118 (120)
155 PF04111 APG6: Autophagy prote 39.7 4E+02 0.0086 26.6 13.1 109 154-263 9-128 (314)
156 PF12325 TMF_TATA_bd: TATA ele 39.6 2.6E+02 0.0056 24.4 13.9 93 154-260 16-108 (120)
157 PF12761 End3: Actin cytoskele 39.6 60 0.0013 30.8 5.2 45 214-261 97-141 (195)
158 COG4306 Uncharacterized protei 39.5 12 0.00027 33.4 0.6 25 329-353 30-55 (160)
159 KOG4466 Component of histone d 39.5 3.3E+02 0.0072 27.4 10.4 17 222-238 118-134 (291)
160 TIGR01069 mutS2 MutS2 family p 39.4 5.9E+02 0.013 28.7 13.7 12 164-175 507-518 (771)
161 PF00038 Filament: Intermediat 39.2 3.6E+02 0.0078 26.0 12.9 80 155-240 9-88 (312)
162 COG4942 Membrane-bound metallo 39.2 4.7E+02 0.01 27.6 12.0 44 193-236 64-110 (420)
163 cd00350 rubredoxin_like Rubred 39.2 8.7 0.00019 25.8 -0.3 16 337-352 17-32 (33)
164 PF10083 DUF2321: Uncharacteri 38.3 12 0.00027 34.2 0.4 25 329-353 30-55 (158)
165 COG1196 Smc Chromosome segrega 37.4 6.1E+02 0.013 29.7 13.8 85 174-260 707-791 (1163)
166 PF07716 bZIP_2: Basic region 37.4 1.6E+02 0.0036 21.5 8.3 26 210-235 29-54 (54)
167 smart00503 SynN Syntaxin N-ter 37.2 2.2E+02 0.0048 23.0 11.4 84 175-262 14-103 (117)
168 PRK13729 conjugal transfer pil 37.1 1.2E+02 0.0026 32.4 7.4 30 212-241 89-118 (475)
169 PRK14140 heat shock protein Gr 37.0 1.4E+02 0.0031 28.0 7.3 28 213-240 44-71 (191)
170 PF00170 bZIP_1: bZIP transcri 36.6 1.8E+02 0.004 21.8 8.6 33 222-254 28-60 (64)
171 PF09730 BicD: Microtubule-ass 36.6 6.7E+02 0.015 28.3 14.1 67 161-227 48-135 (717)
172 KOG1029 Endocytic adaptor prot 35.7 3.4E+02 0.0073 31.3 10.7 8 110-117 312-319 (1118)
173 COG1579 Zn-ribbon protein, pos 35.7 4.3E+02 0.0093 25.8 12.1 36 205-240 88-123 (239)
174 PF06246 Isy1: Isy1-like splic 35.5 1.4E+02 0.0031 29.2 7.3 29 206-234 71-99 (255)
175 PF09726 Macoilin: Transmembra 35.4 6.8E+02 0.015 28.0 14.6 31 227-257 545-575 (697)
176 PF12180 EABR: TSG101 and ALIX 35.3 1.6E+02 0.0035 20.8 5.9 33 227-259 2-34 (35)
177 PRK02224 chromosome segregatio 35.3 6.7E+02 0.014 27.9 15.2 43 210-252 527-569 (880)
178 PLN02189 cellulose synthase 35.3 27 0.00058 40.4 2.5 43 305-348 33-87 (1040)
179 PF05565 Sipho_Gp157: Siphovir 35.3 2.6E+02 0.0057 25.1 8.5 51 214-264 41-91 (162)
180 KOG2817 Predicted E3 ubiquitin 35.0 22 0.00047 36.9 1.6 43 304-348 332-385 (394)
181 PF06818 Fez1: Fez1; InterPro 35.0 2.5E+02 0.0054 26.8 8.5 61 169-230 132-201 (202)
182 KOG3068 mRNA splicing factor [ 33.9 1.3E+02 0.0027 29.7 6.4 41 192-232 46-95 (268)
183 PF14738 PaaSYMP: Solute carri 33.8 3.5E+02 0.0075 24.6 9.0 53 168-220 94-146 (154)
184 KOG4643 Uncharacterized coiled 33.8 7.5E+02 0.016 29.3 13.2 77 169-245 370-454 (1195)
185 PF10217 DUF2039: Uncharacteri 33.6 9.1 0.0002 32.1 -1.1 37 306-347 55-91 (92)
186 PRK10920 putative uroporphyrin 33.6 4.6E+02 0.0099 27.3 10.9 39 202-240 95-134 (390)
187 PRK00409 recombination and DNA 33.5 6.7E+02 0.015 28.3 12.9 13 163-175 511-523 (782)
188 KOG1428 Inhibitor of type V ad 33.0 23 0.0005 42.8 1.6 46 305-351 3485-3547(3738)
189 KOG2129 Uncharacterized conser 32.8 5.5E+02 0.012 27.5 11.2 63 172-239 256-321 (552)
190 PF12718 Tropomyosin_1: Tropom 32.8 3.5E+02 0.0076 24.0 13.6 61 198-259 73-133 (143)
191 PF04977 DivIC: Septum formati 32.6 1.2E+02 0.0027 22.9 5.2 32 208-239 19-50 (80)
192 KOG0249 LAR-interacting protei 32.5 4.2E+02 0.009 30.2 10.7 60 174-233 168-233 (916)
193 TIGR01069 mutS2 MutS2 family p 32.3 7.2E+02 0.016 28.0 12.9 11 178-188 513-523 (771)
194 PRK14714 DNA polymerase II lar 32.2 31 0.00067 40.8 2.4 47 306-353 667-725 (1337)
195 cd00179 SynN Syntaxin N-termin 32.1 3.2E+02 0.0069 23.2 12.3 19 217-235 52-70 (151)
196 PF09787 Golgin_A5: Golgin sub 31.9 6.5E+02 0.014 26.7 12.0 60 203-262 359-427 (511)
197 COG5481 Uncharacterized conser 31.8 2.2E+02 0.0048 22.4 6.3 48 181-233 9-58 (67)
198 PF08700 Vps51: Vps51/Vps67; 31.4 2.5E+02 0.0054 21.8 10.7 33 169-201 26-58 (87)
199 PF03980 Nnf1: Nnf1 ; InterPr 31.4 2.5E+02 0.0054 23.2 7.2 20 163-182 32-51 (109)
200 PF04642 DUF601: Protein of un 31.1 2.6E+02 0.0057 27.9 8.1 30 219-248 258-287 (311)
201 KOG1151 Tousled-like protein k 31.0 2.8E+02 0.006 30.3 8.9 94 160-259 239-351 (775)
202 PRK10963 hypothetical protein; 30.9 1.8E+02 0.0039 27.4 7.0 18 217-234 65-82 (223)
203 KOG4809 Rab6 GTPase-interactin 30.8 7.7E+02 0.017 27.3 13.6 92 168-259 331-453 (654)
204 KOG2660 Locus-specific chromos 30.6 11 0.00023 38.3 -1.3 45 306-351 15-64 (331)
205 PF10234 Cluap1: Clusterin-ass 30.1 3.9E+02 0.0084 26.5 9.3 57 168-226 161-217 (267)
206 KOG0297 TNF receptor-associate 30.1 24 0.00052 36.2 1.0 45 306-351 21-70 (391)
207 PF08614 ATG16: Autophagy prot 30.1 4.3E+02 0.0094 24.1 9.6 14 162-175 75-88 (194)
208 PLN02436 cellulose synthase A 29.8 36 0.00077 39.6 2.4 43 305-348 35-89 (1094)
209 PF08614 ATG16: Autophagy prot 29.6 3.4E+02 0.0074 24.8 8.4 17 222-238 160-176 (194)
210 PF07888 CALCOCO1: Calcium bin 29.6 7.8E+02 0.017 27.0 15.9 25 235-259 291-315 (546)
211 PF04859 DUF641: Plant protein 29.6 1.9E+02 0.0042 25.7 6.5 68 156-228 47-123 (131)
212 PF05266 DUF724: Protein of un 29.2 4.8E+02 0.01 24.4 12.7 28 208-235 126-153 (190)
213 PF08654 DASH_Dad2: DASH compl 29.1 3.3E+02 0.0071 23.1 7.6 17 205-221 3-19 (103)
214 PRK14127 cell division protein 28.8 2.4E+02 0.0052 24.3 6.7 10 168-177 26-35 (109)
215 PF05600 DUF773: Protein of un 28.7 7.6E+02 0.016 26.5 15.0 61 203-263 436-496 (507)
216 PHA02562 46 endonuclease subun 28.6 6.9E+02 0.015 26.0 14.3 45 197-241 204-248 (562)
217 KOG0994 Extracellular matrix g 28.5 1E+03 0.022 29.1 13.1 49 205-253 1618-1666(1758)
218 PRK14143 heat shock protein Gr 28.4 3.3E+02 0.0072 26.4 8.4 25 167-192 66-90 (238)
219 PF05983 Med7: MED7 protein; 28.1 3.8E+02 0.0083 24.3 8.3 57 169-229 105-161 (162)
220 PF08549 SWI-SNF_Ssr4: Fungal 28.0 1.2E+02 0.0025 33.8 5.7 60 168-230 363-429 (669)
221 COG4026 Uncharacterized protei 27.8 6E+02 0.013 25.1 12.9 38 223-260 166-203 (290)
222 PF14282 FlxA: FlxA-like prote 27.5 3.4E+02 0.0073 22.8 7.4 52 212-263 18-73 (106)
223 KOG0804 Cytoplasmic Zn-finger 27.5 8E+02 0.017 26.4 14.9 8 162-169 348-355 (493)
224 COG2433 Uncharacterized conser 27.0 2.6E+02 0.0057 31.0 8.1 53 208-260 438-493 (652)
225 cd08313 Death_TNFR1 Death doma 26.7 87 0.0019 25.4 3.5 54 203-259 16-69 (80)
226 PF09728 Taxilin: Myosin-like 26.7 6.5E+02 0.014 25.1 14.0 99 159-262 79-181 (309)
227 COG5175 MOT2 Transcriptional r 26.2 22 0.00047 36.7 -0.1 40 308-348 16-64 (480)
228 PRK05892 nucleoside diphosphat 26.2 2.6E+02 0.0056 25.2 6.8 6 168-173 18-23 (158)
229 PRK14139 heat shock protein Gr 26.1 1.3E+02 0.0028 28.1 5.0 27 165-192 29-55 (185)
230 COG3937 Uncharacterized conser 26.1 2.1E+02 0.0046 24.8 5.9 18 199-216 61-78 (108)
231 COG2960 Uncharacterized protei 26.0 4.3E+02 0.0093 22.8 8.1 11 219-229 72-82 (103)
232 KOG2991 Splicing regulator [RN 25.8 7E+02 0.015 25.1 11.6 28 213-240 177-204 (330)
233 TIGR02231 conserved hypothetic 25.7 8E+02 0.017 25.8 11.7 41 219-259 130-170 (525)
234 TIGR01461 greB transcription e 25.7 2E+02 0.0044 25.8 6.0 18 213-230 45-62 (156)
235 TIGR03185 DNA_S_dndD DNA sulfu 25.7 8.9E+02 0.019 26.3 12.9 22 238-259 259-280 (650)
236 PF11505 DUF3216: Protein of u 25.7 2.2E+02 0.0049 24.1 5.8 57 168-230 21-85 (97)
237 PF08112 ATP-synt_E_2: ATP syn 25.5 3.2E+02 0.0068 21.1 7.1 46 168-221 7-52 (56)
238 KOG2391 Vacuolar sorting prote 25.4 7.1E+02 0.015 25.9 10.3 24 212-235 241-264 (365)
239 PF14662 CCDC155: Coiled-coil 25.1 6E+02 0.013 24.2 12.8 77 178-260 38-114 (193)
240 PF03528 Rabaptin: Rabaptin; 25.1 2.8E+02 0.006 23.9 6.4 31 206-236 70-102 (106)
241 COG5019 CDC3 Septin family pro 25.1 4.9E+02 0.011 27.1 9.3 42 191-232 327-368 (373)
242 PF06188 HrpE: HrpE/YscL/FliH 25.1 5.5E+02 0.012 23.7 12.3 27 194-220 33-59 (191)
243 PF10174 Cast: RIM-binding pro 25.1 1.1E+03 0.023 27.0 15.1 84 175-260 321-404 (775)
244 PHA03248 DNA packaging tegumen 25.0 2.5E+02 0.0055 30.8 7.6 49 181-229 53-108 (583)
245 KOG0006 E3 ubiquitin-protein l 24.9 41 0.00088 34.5 1.6 29 306-335 221-251 (446)
246 COG4357 Zinc finger domain con 24.9 40 0.00086 28.8 1.3 43 308-350 37-93 (105)
247 PRK04863 mukB cell division pr 24.8 1.4E+03 0.029 28.2 16.3 45 214-258 356-400 (1486)
248 PF08202 MIS13: Mis12-Mtw1 pro 24.7 93 0.002 30.8 4.0 24 220-243 164-187 (301)
249 PF04977 DivIC: Septum formati 24.5 2.9E+02 0.0064 20.8 6.1 27 206-232 24-50 (80)
250 PF08317 Spc7: Spc7 kinetochor 24.5 7E+02 0.015 24.7 14.9 32 156-187 113-144 (325)
251 KOG1941 Acetylcholine receptor 24.4 4.8E+02 0.01 27.7 9.1 40 306-346 365-414 (518)
252 KOG3119 Basic region leucine z 24.4 3.9E+02 0.0084 26.1 8.2 37 223-259 218-254 (269)
253 PHA02562 46 endonuclease subun 24.0 8.3E+02 0.018 25.4 13.0 32 204-235 356-387 (562)
254 PRK14127 cell division protein 23.8 1.9E+02 0.0041 25.0 5.2 30 214-243 38-67 (109)
255 PRK14157 heat shock protein Gr 23.7 1.8E+02 0.0039 28.2 5.6 35 210-244 81-115 (227)
256 PLN03184 chloroplast Hsp70; Pr 23.7 1E+03 0.022 26.3 14.6 49 179-229 558-608 (673)
257 KOG3161 Predicted E3 ubiquitin 23.5 31 0.00066 38.2 0.4 37 308-346 13-55 (861)
258 PRK14155 heat shock protein Gr 23.2 4.6E+02 0.0099 25.0 8.2 9 214-222 42-50 (208)
259 KOG0709 CREB/ATF family transc 23.2 1.7E+02 0.0037 31.2 5.7 36 224-259 276-311 (472)
260 PF06657 Cep57_MT_bd: Centroso 23.0 4E+02 0.0087 21.4 7.0 23 155-177 11-33 (79)
261 COG3159 Uncharacterized protei 22.9 3.2E+02 0.0069 26.5 7.0 21 214-234 46-66 (218)
262 PF04156 IncA: IncA protein; 22.9 5.5E+02 0.012 22.9 14.7 20 214-233 131-150 (191)
263 KOG3113 Uncharacterized conser 22.9 68 0.0015 31.9 2.6 47 306-353 111-163 (293)
264 cd00730 rubredoxin Rubredoxin; 22.9 33 0.00071 25.6 0.4 13 339-351 36-48 (50)
265 PF10186 Atg14: UV radiation r 22.9 6.3E+02 0.014 23.6 16.0 28 232-259 124-151 (302)
266 PF07334 IFP_35_N: Interferon- 22.7 1.4E+02 0.0029 24.4 3.9 24 215-238 2-25 (76)
267 COG3851 UhpB Signal transducti 22.7 3.9E+02 0.0085 28.3 8.0 24 206-229 272-295 (497)
268 PF06210 DUF1003: Protein of u 22.5 3.5E+02 0.0076 23.1 6.6 27 153-179 53-79 (108)
269 PF14712 Snapin_Pallidin: Snap 22.2 4E+02 0.0088 21.1 10.5 56 175-232 34-90 (92)
270 PRK15365 type III secretion sy 22.0 3.7E+02 0.0081 23.1 6.5 42 193-234 49-94 (107)
271 PF10198 Ada3: Histone acetylt 21.9 5.1E+02 0.011 22.8 7.7 56 203-262 37-92 (131)
272 KOG4445 Uncharacterized conser 21.6 23 0.0005 35.9 -0.9 22 306-327 115-139 (368)
273 TIGR02209 ftsL_broad cell divi 21.6 2.6E+02 0.0057 21.7 5.4 36 207-242 25-60 (85)
274 PRK06975 bifunctional uroporph 21.4 9.3E+02 0.02 26.5 11.2 77 162-240 343-419 (656)
275 PF07295 DUF1451: Protein of u 21.4 6E+02 0.013 22.8 12.9 14 231-244 67-80 (146)
276 PF13600 DUF4140: N-terminal d 21.4 2E+02 0.0044 23.4 4.8 30 210-239 74-103 (104)
277 PF05008 V-SNARE: Vesicle tran 21.1 3.9E+02 0.0084 20.5 10.3 30 210-239 22-51 (79)
278 PF08172 CASP_C: CASP C termin 21.0 1.9E+02 0.0042 28.1 5.3 13 170-182 80-92 (248)
279 PRK13182 racA polar chromosome 20.9 6.7E+02 0.014 23.1 8.9 25 207-231 119-143 (175)
280 PRK14148 heat shock protein Gr 20.8 2.7E+02 0.0059 26.2 6.1 24 168-192 40-63 (195)
281 KOG1940 Zn-finger protein [Gen 20.8 18 0.0004 35.8 -1.8 41 307-349 159-207 (276)
282 PF06273 eIF-4B: Plant specifi 20.8 88 0.0019 33.5 3.1 12 206-217 403-414 (492)
283 PRK03564 formate dehydrogenase 20.7 98 0.0021 31.2 3.3 41 306-346 187-235 (309)
284 PF11221 Med21: Subunit 21 of 20.7 5.8E+02 0.013 22.4 8.2 18 158-175 73-90 (144)
285 PRK14158 heat shock protein Gr 20.6 4.1E+02 0.009 25.0 7.2 16 175-190 46-61 (194)
286 KOG1029 Endocytic adaptor prot 20.6 1.4E+03 0.03 26.7 15.3 9 228-236 407-415 (1118)
287 PRK00409 recombination and DNA 20.5 1.3E+03 0.027 26.2 13.4 9 179-187 519-527 (782)
288 PF11740 KfrA_N: Plasmid repli 20.4 4.9E+02 0.011 21.4 9.4 16 211-226 100-115 (120)
289 KOG4809 Rab6 GTPase-interactin 20.4 1.2E+03 0.026 25.9 13.5 28 208-235 326-353 (654)
290 PHA02107 hypothetical protein 20.4 2.4E+02 0.0052 26.5 5.4 31 203-233 181-211 (216)
291 KOG2008 BTK-associated SH3-dom 20.3 9.8E+02 0.021 24.8 14.0 18 205-222 161-178 (426)
292 PLN03188 kinesin-12 family pro 20.2 1.4E+03 0.03 27.8 12.6 23 205-227 1203-1225(1320)
293 PF07800 DUF1644: Protein of u 20.1 53 0.0012 30.3 1.2 17 337-353 80-96 (162)
294 PF12329 TMF_DNA_bd: TATA elem 20.1 4.5E+02 0.0097 20.8 9.1 38 203-243 33-70 (74)
295 PF15070 GOLGA2L5: Putative go 20.0 1.2E+03 0.026 25.8 15.8 24 223-246 198-221 (617)
296 PF08172 CASP_C: CASP C termin 20.0 5.3E+02 0.012 25.1 8.1 19 212-230 113-131 (248)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-39 Score=301.24 Aligned_cols=192 Identities=46% Similarity=0.774 Sum_probs=168.3
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018409 158 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ 237 (356)
Q Consensus 158 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~Q 237 (356)
+|++++++|..|||+|++++.++||..+.+.++++++.++.++|..+.++||+|++||++++++||+|+|+++++.+|++
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC-CCCCCcccccccccCCCccccCCCCcccccccccccc
Q 018409 238 VWQAKARAQEATAASLQAQLQQAIMSGAGCGAQDSRRGDDGL-MCTGEVAEDAESAYVDPDRVVSVPVSGPACKGCRKRV 316 (356)
Q Consensus 238 aWq~~A~~nEA~a~~Lra~LqQ~l~~~~~~~~~~~~~g~~g~-~c~g~~~eDaeS~~~d~~r~~~~~~~~~~C~vC~~~~ 316 (356)
.|+++|++||+++++|+.+|+|++.+.. .....++++. .++..+.||++|+|++++........ .|+.|.+++
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~----~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~~~~~~--~Cr~C~~~~ 168 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCP----ASAPAEERGQKSCGDREADDGKSSYVDPSVDNFKRMR--SCRKCGERE 168 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcc----cccCchhhhccccCccccccccccccchhhhhhhccc--cceecCcCC
Confidence 9999999999999999999999999851 1111222222 22333578999988888664422122 299999999
Q ss_pred cceEEeCCCCcccchhhHhhCCCCCCCccccCceEEEee
Q 018409 317 ASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFL 355 (356)
Q Consensus 317 ~~vlLlPCrHlclC~~C~~~l~~CPvCr~~i~~sV~V~l 355 (356)
++|+|+||+|+|+|..|+..+..||+|+.+++++|+||+
T Consensus 169 ~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 169 ATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred ceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 999999999999999999889999999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.9e-12 Score=126.62 Aligned_cols=52 Identities=35% Similarity=0.945 Sum_probs=47.8
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHhhCC----CCCCCccccCceEEEee
Q 018409 304 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFL 355 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~----~CPvCr~~i~~sV~V~l 355 (356)
.++..|+||.+..+++++|||||+|+|..|+..++ .||+||.+|...++|++
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 34789999999999999999999999999999874 69999999999999875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.94 E-value=3.4e-10 Score=82.30 Aligned_cols=43 Identities=42% Similarity=0.987 Sum_probs=38.6
Q ss_pred cccccccccccceEEeCCCCcccchhhHhhC----CCCCCCccccCc
Q 018409 307 PACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 349 (356)
Q Consensus 307 ~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~ 349 (356)
..|.+|+++..+++++||||+++|..|...+ ..||+||.+|+.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 5799999999999999999999999999887 799999999875
No 4
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.6e-10 Score=87.40 Aligned_cols=50 Identities=26% Similarity=0.727 Sum_probs=45.3
Q ss_pred cccccccccccceEEeCCCCcccchhhHhhC-----CCCCCCccccCceEEEeeC
Q 018409 307 PACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDSSVEVFLS 356 (356)
Q Consensus 307 ~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-----~~CPvCr~~i~~sV~V~lS 356 (356)
-+|.+|++.+.+.+|.-|||+|+|.+|+..+ ..||+||.+|...|+.|-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5799999999999999999999999998875 3799999999999988754
No 5
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.3e-09 Score=105.92 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=48.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhCCCCCCCccccCceEEEeeC
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~~CPvCr~~i~~sV~V~lS 356 (356)
+..|+||++.+++.+||||||.+.|..|...|..|||||..|...++||-+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 568999999999999999999999999999999999999999999999853
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.8e-09 Score=103.57 Aligned_cols=51 Identities=29% Similarity=0.703 Sum_probs=48.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhCCCCCCCccccCceEEEeeC
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~~CPvCr~~i~~sV~V~lS 356 (356)
...|+||.+++.+++|+||||+|.|..|...+..||+||..|...+++|.|
T Consensus 305 p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 305 PDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999999999999999999875
No 7
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=6.4e-05 Score=80.95 Aligned_cols=123 Identities=21% Similarity=0.402 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 018409 203 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSGAGCGAQDSRRGDDGLMCT 282 (356)
Q Consensus 203 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~~~~~~~~~~~~g~~g~~c~ 282 (356)
.+.+.+...-.++++...+.-.+++.+.-+..|-..-....+--|.-...|+-.|+.+-. . +.++.+.
T Consensus 563 e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~---------~---~~~~s~d 630 (698)
T KOG0978|consen 563 EAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK---------E---ESGASAD 630 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------c---ccccccc
Confidence 445555566666666666666666666666666666666666666666667766665311 1 1111000
Q ss_pred CCcccccccccCCCccccCCCCcccccccccccccceEEeCCCCcccchhhHhh-----CCCCCCCccccCc
Q 018409 283 GEVAEDAESAYVDPDRVVSVPVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 349 (356)
Q Consensus 283 g~~~eDaeS~~~d~~r~~~~~~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~ 349 (356)
...+++.. +. .....|.+|.+++.++++.-|+|+ +|..|... .++||.|.+++-.
T Consensus 631 ~~L~EElk-------~y----K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 631 EVLAEELK-------EY----KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HHHHHHHH-------HH----HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 00111111 11 124689999999999999999999 99999665 5899999998754
No 8
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.42 E-value=4.7e-05 Score=77.38 Aligned_cols=51 Identities=31% Similarity=0.604 Sum_probs=43.2
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhHhh------CCCCCCCccccCceEEEe
Q 018409 303 PVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV------VQACPLCFNVRDSSVEVF 354 (356)
Q Consensus 303 ~~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~------l~~CPvCr~~i~~sV~V~ 354 (356)
+..--.|+||-++..+|-+-||||+ +|..|-.. -..||.||..|.++-.|.
T Consensus 366 gsTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 366 GSTFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred cchHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 4445689999999999999999999 99999655 259999999999876554
No 9
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.38 E-value=0.0001 Score=52.42 Aligned_cols=36 Identities=28% Similarity=0.850 Sum_probs=30.4
Q ss_pred cccccccc---cceEEeCCCCcccchhhHhhCC----CCCCCcc
Q 018409 309 CKGCRKRV---ASVVLLPCRHLCVCTECDRVVQ----ACPLCFN 345 (356)
Q Consensus 309 C~vC~~~~---~~vlLlPCrHlclC~~C~~~l~----~CPvCr~ 345 (356)
|.+|++.- ...+|++|+|. +|..|...+. .||+|+.
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 77787765 45788999999 9999999877 9999984
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0002 Score=68.11 Aligned_cols=50 Identities=24% Similarity=0.457 Sum_probs=40.6
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHhh-------CCCCCCCccccCc--eEEEe
Q 018409 304 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-------VQACPLCFNVRDS--SVEVF 354 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-------l~~CPvCr~~i~~--sV~V~ 354 (356)
.+...|-||++...+-|+-+|||| +|..|--. .+.||||+..|.. .|-||
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 446789999999999999999999 99999544 3589999996654 55554
No 11
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00019 Score=70.26 Aligned_cols=49 Identities=27% Similarity=0.554 Sum_probs=39.9
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhHhh----CCCCCCCccccCceEE
Q 018409 303 PVSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVE 352 (356)
Q Consensus 303 ~~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~sV~ 352 (356)
.+..+.|.+|.++..+-...||||+ +|..|-.. ...||+||....-+=-
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcce
Confidence 3556899999999999888999999 99999543 4689999997665433
No 12
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.23 E-value=0.00029 Score=65.60 Aligned_cols=48 Identities=27% Similarity=0.593 Sum_probs=39.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhh--------------------CCCCCCCccccCc--eEEEe
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRV--------------------VQACPLCFNVRDS--SVEVF 354 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~--------------------l~~CPvCr~~i~~--sV~V~ 354 (356)
...|.||.+...+.++.||+|+ +|..|... ...||+|+.++.. .+.||
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 4689999999999999999998 89999743 1379999998865 44444
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.14 E-value=0.00024 Score=49.11 Aligned_cols=34 Identities=35% Similarity=0.918 Sum_probs=27.5
Q ss_pred cccccccccce-EEeCCCCcccchhhHhh----CCCCCCC
Q 018409 309 CKGCRKRVASV-VLLPCRHLCVCTECDRV----VQACPLC 343 (356)
Q Consensus 309 C~vC~~~~~~v-lLlPCrHlclC~~C~~~----l~~CPvC 343 (356)
|.+|++...+. +++||||+ +|.+|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999998887 68999999 89999765 3689988
No 14
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.11 E-value=0.00046 Score=66.14 Aligned_cols=47 Identities=28% Similarity=0.653 Sum_probs=36.1
Q ss_pred ccccccccccccc--------eEEeCCCCcccchhhHhh----CCCCCCCccccCceEEE
Q 018409 306 GPACKGCRKRVAS--------VVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 353 (356)
Q Consensus 306 ~~~C~vC~~~~~~--------vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~sV~V 353 (356)
...|.+|.+.-.. .++.||+|. +|..|-.. ...||+||.++...+..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 3579999886321 456789997 99999644 35999999999887765
No 15
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.98 E-value=0.00054 Score=44.56 Aligned_cols=34 Identities=38% Similarity=1.021 Sum_probs=29.3
Q ss_pred cccccccccceEEeCCCCcccchhhHhh-----CCCCCCC
Q 018409 309 CKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLC 343 (356)
Q Consensus 309 C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvC 343 (356)
|.+|++.....+++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7889999889999999999 89999764 3579987
No 16
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.94 E-value=0.00042 Score=52.61 Aligned_cols=42 Identities=29% Similarity=0.628 Sum_probs=36.0
Q ss_pred cccccccccccceEEeCCCCcccchhhHhh--CCCCCCCccccCc
Q 018409 307 PACKGCRKRVASVVLLPCRHLCVCTECDRV--VQACPLCFNVRDS 349 (356)
Q Consensus 307 ~~C~vC~~~~~~vlLlPCrHlclC~~C~~~--l~~CPvCr~~i~~ 349 (356)
-.|..|......-+++||+|+ +|..|... ...||+|..++..
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred eeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 478999999888889999999 89999655 5799999998764
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.82 E-value=0.001 Score=44.78 Aligned_cols=39 Identities=38% Similarity=0.881 Sum_probs=29.7
Q ss_pred ccccccccc-cceEEeCCCCcccchhhHhh-----CCCCCCCcccc
Q 018409 308 ACKGCRKRV-ASVVLLPCRHLCVCTECDRV-----VQACPLCFNVR 347 (356)
Q Consensus 308 ~C~vC~~~~-~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i 347 (356)
.|.+|++.. ..+.+.||+|. +|..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 488998887 44555669999 89999763 34799998753
No 18
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=96.62 E-value=0.0011 Score=46.69 Aligned_cols=36 Identities=33% Similarity=0.816 Sum_probs=28.3
Q ss_pred ccccccccc---cceEEeCCCCcccchhhHhh----CCCCCCCc
Q 018409 308 ACKGCRKRV---ASVVLLPCRHLCVCTECDRV----VQACPLCF 344 (356)
Q Consensus 308 ~C~vC~~~~---~~vlLlPCrHlclC~~C~~~----l~~CPvCr 344 (356)
.|.||++.- ..++.+||+|. +|..|... -..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 588888764 46888999998 99999665 36999997
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=96.21 E-value=0.0028 Score=43.61 Aligned_cols=34 Identities=44% Similarity=1.008 Sum_probs=28.6
Q ss_pred cccccccccceE-EeCCCCcccchhhHhhC------CCCCCC
Q 018409 309 CKGCRKRVASVV-LLPCRHLCVCTECDRVV------QACPLC 343 (356)
Q Consensus 309 C~vC~~~~~~vl-LlPCrHlclC~~C~~~l------~~CPvC 343 (356)
|.+|.+.....+ ++||+|. +|..|.... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 788999888877 9999999 999996652 479987
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.002 Score=59.43 Aligned_cols=49 Identities=24% Similarity=0.606 Sum_probs=37.5
Q ss_pred ccccccccccccceE-E-eCCCCcccchhhHhhC----CCCCCCccccCc--eEEEee
Q 018409 306 GPACKGCRKRVASVV-L-LPCRHLCVCTECDRVV----QACPLCFNVRDS--SVEVFL 355 (356)
Q Consensus 306 ~~~C~vC~~~~~~vl-L-lPCrHlclC~~C~~~l----~~CPvCr~~i~~--sV~V~l 355 (356)
...|.+|++.-.--+ + --|||+ +|+.|.... .+||+|+..|+. ++.|||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 468999998765544 3 689999 999998773 599999976653 666664
No 21
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.004 Score=65.12 Aligned_cols=49 Identities=24% Similarity=0.524 Sum_probs=40.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhh---------CCCCCCCccccCc--eEEEe
Q 018409 305 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV---------VQACPLCFNVRDS--SVEVF 354 (356)
Q Consensus 305 ~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~---------l~~CPvCr~~i~~--sV~V~ 354 (356)
....|.||++.+...++.-|||. .|..|--. ...||+|+..|.. ..-|+
T Consensus 185 t~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 185 TDMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred cCCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 37899999999999999999999 89999433 3599999998876 44443
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.92 E-value=0.0041 Score=63.61 Aligned_cols=44 Identities=30% Similarity=0.653 Sum_probs=36.8
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 305 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
....|.||.+.-..-+++||+|. +|..|... ...||+|+..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 35799999998888888999999 89999764 2479999998754
No 23
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.0061 Score=59.28 Aligned_cols=43 Identities=28% Similarity=0.609 Sum_probs=36.2
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHhh------CCCCCCCcccc
Q 018409 304 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV------VQACPLCFNVR 347 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~------l~~CPvCr~~i 347 (356)
.....|.+|.+..-+....||||+ +|..|--. ...||+||...
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhc
Confidence 446799999999999999999999 89999544 34799999854
No 24
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.0036 Score=56.09 Aligned_cols=39 Identities=33% Similarity=0.739 Sum_probs=33.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC----CCCCCCcc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFN 345 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~ 345 (356)
...|.||++.-..-.++||+|. +|..|.... -.||.|+.
T Consensus 13 ~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 5689999998777799999999 899998774 48999993
No 25
>PHA02926 zinc finger-like protein; Provisional
Probab=95.48 E-value=0.0051 Score=58.77 Aligned_cols=45 Identities=24% Similarity=0.572 Sum_probs=33.4
Q ss_pred ccccccccccc---------cceEEeCCCCcccchhhHhh----------CCCCCCCccccCceE
Q 018409 306 GPACKGCRKRV---------ASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDSSV 351 (356)
Q Consensus 306 ~~~C~vC~~~~---------~~vlLlPCrHlclC~~C~~~----------l~~CPvCr~~i~~sV 351 (356)
...|.+|++.- .--+|.||+|. +|..|-.. .+.||+||......+
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 46899999752 12467899999 99999553 135999999877544
No 26
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=95.21 E-value=0.009 Score=42.46 Aligned_cols=34 Identities=35% Similarity=0.836 Sum_probs=25.0
Q ss_pred cccccccccceEEeCCCCcccchhhHhhC--------CCCCCC
Q 018409 309 CKGCRKRVASVVLLPCRHLCVCTECDRVV--------QACPLC 343 (356)
Q Consensus 309 C~vC~~~~~~vlLlPCrHlclC~~C~~~l--------~~CPvC 343 (356)
|.||.+--.+-+.++|||. +|..|.... -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7889998888888999999 899997663 268887
No 27
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=94.90 E-value=0.021 Score=42.28 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=34.4
Q ss_pred cccccccccccceEEeCCCCcccchhhHhhC----CCCCCCccccCc
Q 018409 307 PACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 349 (356)
Q Consensus 307 ~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~ 349 (356)
..|.+|++--.+-++.||||. .|..|.... ..||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 368999988888788899988 799996653 589999998743
No 28
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.73 E-value=0.019 Score=58.05 Aligned_cols=47 Identities=26% Similarity=0.663 Sum_probs=39.5
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHhhC------CCCCCCccccCceE
Q 018409 304 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV------QACPLCFNVRDSSV 351 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l------~~CPvCr~~i~~sV 351 (356)
+..+.|.||-..-.-+.++||+|. +|-.|+-.+ +.||+|++.-..++
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 346789999999888999999999 899998774 69999998765544
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=94.64 E-value=0.014 Score=42.03 Aligned_cols=27 Identities=30% Similarity=0.981 Sum_probs=16.4
Q ss_pred cccccccccc----eEEeCCCCcccchhhHhhC
Q 018409 309 CKGCRKRVAS----VVLLPCRHLCVCTECDRVV 337 (356)
Q Consensus 309 C~vC~~~~~~----vlLlPCrHlclC~~C~~~l 337 (356)
|.||++ ..+ -++|||||. +|..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 778888 555 577899999 899997764
No 30
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=94.17 E-value=0.025 Score=56.11 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=35.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhh----CCCCCCCcccc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVR 347 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i 347 (356)
...|.||...-.--++-||+|. +|.-|... -..||+||.+.
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~ 69 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDP 69 (391)
T ss_pred HHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccH
Confidence 3589999999998899999999 99999876 36999999864
No 31
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.044 Score=53.79 Aligned_cols=45 Identities=27% Similarity=0.544 Sum_probs=36.4
Q ss_pred CCcccccccccccccc-eEEeCCCCcccchhhHhhC------CCCCCCccccC
Q 018409 303 PVSGPACKGCRKRVAS-VVLLPCRHLCVCTECDRVV------QACPLCFNVRD 348 (356)
Q Consensus 303 ~~~~~~C~vC~~~~~~-vlLlPCrHlclC~~C~~~l------~~CPvCr~~i~ 348 (356)
+.++.+|.+|.+.+.- .+..||+|. .|..|...- -.||.|..+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 3567899999999887 566789997 899997762 28999998765
No 32
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.026 Score=57.23 Aligned_cols=44 Identities=23% Similarity=0.503 Sum_probs=35.6
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHhh-C---CCCCCCccccC
Q 018409 304 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-V---QACPLCFNVRD 348 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-l---~~CPvCr~~i~ 348 (356)
.....|.||+-.+.+.+|-||+|. .|..|-.. + +.|-.|++.+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceee
Confidence 345689999999999999999999 79999765 3 56777766543
No 33
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.057 Score=53.88 Aligned_cols=42 Identities=26% Similarity=0.635 Sum_probs=32.6
Q ss_pred ccccccccccc---cceEEeCCCCcccchhhHhh-----CCCCCCCccccC
Q 018409 306 GPACKGCRKRV---ASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRD 348 (356)
Q Consensus 306 ~~~C~vC~~~~---~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~ 348 (356)
+-.|.+|+++- -.++++||.|. +=..|..+ --+||+||+++.
T Consensus 323 GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 47899998852 23778899999 67788665 249999999875
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=92.98 E-value=0.034 Score=56.18 Aligned_cols=44 Identities=27% Similarity=0.581 Sum_probs=37.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC----CCCCCCccccCce
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSS 350 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~s 350 (356)
...|-||++--.--++.||+|. +|.-|.... ..||.|..++..+
T Consensus 23 lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 3589999999888899999999 899998773 6999999887653
No 35
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.96 E-value=0.067 Score=56.49 Aligned_cols=41 Identities=34% Similarity=0.670 Sum_probs=35.0
Q ss_pred ccccccccccccc-----eEEeCCCCcccchhhHhh----CCCCCCCcccc
Q 018409 306 GPACKGCRKRVAS-----VVLLPCRHLCVCTECDRV----VQACPLCFNVR 347 (356)
Q Consensus 306 ~~~C~vC~~~~~~-----vlLlPCrHlclC~~C~~~----l~~CPvCr~~i 347 (356)
...|.||.+.-.. ...+||+|. ++..|-.. ...||+||..+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhh
Confidence 4589999998888 789999999 89999665 57999999943
No 36
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=90.29 E-value=0.17 Score=51.90 Aligned_cols=44 Identities=27% Similarity=0.617 Sum_probs=30.6
Q ss_pred CCcccccccccccc-------------cceEEeCCCCcccchhhHhh----CCCCCCCcccc
Q 018409 303 PVSGPACKGCRKRV-------------ASVVLLPCRHLCVCTECDRV----VQACPLCFNVR 347 (356)
Q Consensus 303 ~~~~~~C~vC~~~~-------------~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i 347 (356)
+.+...|.+|+++- ..--=+||||. +=-.|-+. -++||+||.++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 45678999999871 11234799997 55555433 47999999984
No 37
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.02 E-value=0.28 Score=47.15 Aligned_cols=46 Identities=20% Similarity=0.327 Sum_probs=36.0
Q ss_pred Cccccccccccc----ccceEEeCCCCcccchhhHhhCC---CCCCCccccCce
Q 018409 304 VSGPACKGCRKR----VASVVLLPCRHLCVCTECDRVVQ---ACPLCFNVRDSS 350 (356)
Q Consensus 304 ~~~~~C~vC~~~----~~~vlLlPCrHlclC~~C~~~l~---~CPvCr~~i~~s 350 (356)
.....|.|++.. ..-|+|.||||+ ++..+...+. .||+|..+....
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 345688888754 355888999998 7899988876 899999987653
No 38
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=90.01 E-value=0.18 Score=39.69 Aligned_cols=41 Identities=29% Similarity=0.677 Sum_probs=21.7
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhHhhC--CCCCCCcccc
Q 018409 306 GPACKGCRKRVAS-VVLLPCRHLCVCTECDRVV--QACPLCFNVR 347 (356)
Q Consensus 306 ~~~C~vC~~~~~~-vlLlPCrHlclC~~C~~~l--~~CPvCr~~i 347 (356)
...|.+|.+--.. |.+.-|.|. +|..|.... ..||+|..|-
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 4579999886555 457899999 999998774 6899999875
No 39
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=89.57 E-value=0.26 Score=38.80 Aligned_cols=27 Identities=33% Similarity=0.774 Sum_probs=19.8
Q ss_pred cceEEeCCCCcccchhhHhh----CCCCCCCc
Q 018409 317 ASVVLLPCRHLCVCTECDRV----VQACPLCF 344 (356)
Q Consensus 317 ~~vlLlPCrHlclC~~C~~~----l~~CPvCr 344 (356)
..+++.+|+|. +-..|-.. -..||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 44567899999 78888654 36999997
No 40
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=89.35 E-value=0.31 Score=48.97 Aligned_cols=48 Identities=6% Similarity=-0.076 Sum_probs=41.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC--CCCCCCccccCceEEE
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV--QACPLCFNVRDSSVEV 353 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l--~~CPvCr~~i~~sV~V 353 (356)
...|.+|..+-.+.++.||+|.-.|.+|+..- .+||+|....-..|.|
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 46899999999999999999999999998752 5999999877666665
No 41
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.87 E-value=0.27 Score=50.76 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=32.7
Q ss_pred ccccccccccccc---eEEeCCCCcccchhhHhhC------------CCCCCCccccC
Q 018409 306 GPACKGCRKRVAS---VVLLPCRHLCVCTECDRVV------------QACPLCFNVRD 348 (356)
Q Consensus 306 ~~~C~vC~~~~~~---vlLlPCrHlclC~~C~~~l------------~~CPvCr~~i~ 348 (356)
...|.||++.... +.|+||+|+ +|+.|.... -.||-|....+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSV 240 (445)
T ss_pred cccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCccc
Confidence 4689999997655 889999999 899997761 27887766543
No 42
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=87.00 E-value=17 Score=34.54 Aligned_cols=83 Identities=23% Similarity=0.310 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhHHHHH
Q 018409 166 QRDELDQFLQAQGEQLRR---ALAEKRQRHYRALLGAAEESIARLLR---------------EKEAEVEKATRRNAELEA 227 (356)
Q Consensus 166 Q~~EID~~i~~q~ErLR~---~L~E~rqrh~r~ll~avE~~~~~rLR---------------eKEeEIera~rrn~ELEE 227 (356)
-+..=.++|.+++|-.+. +|+|---||... .|++..++.|.+ .-++||-.+++|+.|||-
T Consensus 66 LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~--dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~ 143 (205)
T PF12240_consen 66 LREKEERILALEADMTKWEQKYLEESAMRQFAM--DAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMEN 143 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHH
Confidence 334445899999998875 577776666543 344555555655 337899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 228 RAAQLSVEAQVWQAKARAQEATAASLQAQL 257 (356)
Q Consensus 228 Rlrql~~E~QaWq~~A~~nEA~a~~Lra~L 257 (356)
||+.|.++ -.+.+||+..|+...
T Consensus 144 RIK~Lhaq-------I~EKDAmIkVLQqrs 166 (205)
T PF12240_consen 144 RIKALHAQ-------IAEKDAMIKVLQQRS 166 (205)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 99999865 357789999987443
No 43
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.91 E-value=27 Score=32.67 Aligned_cols=93 Identities=23% Similarity=0.302 Sum_probs=57.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--------HHH
Q 018409 161 SPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA--------AQL 232 (356)
Q Consensus 161 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERl--------rql 232 (356)
..++....+|.++|.-|.+.+|.-=+..|+- ..-+..+-++||++++||.++......|..-+ ..|
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~------q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL 123 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKS------QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREEL 123 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH
Confidence 3466677888888999999988766666542 22344566899999999998866654433321 122
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 233 SVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 233 ~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
.-+...-......++..+..|..+|+-
T Consensus 124 ~~kL~~~~~~l~~~~~ki~~Lek~leL 150 (194)
T PF15619_consen 124 QRKLSQLEQKLQEKEKKIQELEKQLEL 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333344455555566666655544
No 44
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.62 E-value=0.47 Score=48.11 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=29.3
Q ss_pred ccccccccc---ccceEEeCCCCcccchhhHhh-----CCCCCCCccccCce
Q 018409 307 PACKGCRKR---VASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSS 350 (356)
Q Consensus 307 ~~C~vC~~~---~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~s 350 (356)
-.|.||.+. .-.+.+|||.|-- =..|-.. -+.||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCCC
Confidence 489999874 3336679999983 3345333 14699999977653
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=86.58 E-value=23 Score=39.25 Aligned_cols=52 Identities=23% Similarity=0.255 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 257 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 257 (356)
.|.|+.|.||.+.++.....||+++.+..|.+.-+..-++++.-+-.|...|
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL 596 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSAL 596 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3677888889999999999999999999999776665233433333333333
No 46
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=85.66 E-value=36 Score=32.89 Aligned_cols=95 Identities=27% Similarity=0.428 Sum_probs=66.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHH
Q 018409 163 IKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAELEARAAQL----SVEA 236 (356)
Q Consensus 163 l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~--~~~~rLReKEeEIera~rrn~ELEERlrql----~~E~ 236 (356)
+.+-+.|++.+.+.+.+.++....... ..+-.+=+. ..-..+.....||+.+..+|..||.+|..+ ..+.
T Consensus 182 ~~~~~~e~e~~y~~k~~~l~~~~~~~~----~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~ 257 (312)
T PF00038_consen 182 AQKNREELEEWYQSKLEELRQQSEKSS----EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhcccccccccccccccc----cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH
Confidence 445566777777777776665554432 222211111 344567888899999999999999999766 4577
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 018409 237 QVWQAKARAQEATAASLQAQLQQAI 261 (356)
Q Consensus 237 QaWq~~A~~nEA~a~~Lra~LqQ~l 261 (356)
+.|+..-..-|+.+..|+..+.+.+
T Consensus 258 ~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 258 EEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhHHHHHHHHHHHH
Confidence 7899988888998888888886644
No 47
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.22 E-value=0.41 Score=49.32 Aligned_cols=45 Identities=31% Similarity=0.612 Sum_probs=35.9
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 304 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
.+...|.||+.---..+..||||. .|..|-.. -..||.|+.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 456799999888777777799999 89999332 3699999988764
No 48
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.08 E-value=0.47 Score=48.03 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=36.2
Q ss_pred cccccccccccccceE-----E---eCCCCcccchhhHhh-----------CCCCCCCccccCceE
Q 018409 305 SGPACKGCRKRVASVV-----L---LPCRHLCVCTECDRV-----------VQACPLCFNVRDSSV 351 (356)
Q Consensus 305 ~~~~C~vC~~~~~~vl-----L---lPCrHlclC~~C~~~-----------l~~CPvCr~~i~~sV 351 (356)
....|-||++.-.... | .+|.|. +|..|... .+.||.||.+...++
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 3578999999877766 5 679999 89999543 369999999876554
No 49
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=85.05 E-value=1.8 Score=42.07 Aligned_cols=48 Identities=29% Similarity=0.502 Sum_probs=24.5
Q ss_pred ccccccccccccceEEeCC-----CCcccchhhHhh--C--CCCCCCccccCceEEEe
Q 018409 306 GPACKGCRKRVASVVLLPC-----RHLCVCTECDRV--V--QACPLCFNVRDSSVEVF 354 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPC-----rHlclC~~C~~~--l--~~CPvCr~~i~~sV~V~ 354 (356)
...|.||++.+.-.+|.+= ||+ .|..|... + -.||.|.......+..|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 3689999999888777654 445 79999766 2 39999999887777654
No 50
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.20 E-value=45 Score=35.40 Aligned_cols=103 Identities=21% Similarity=0.337 Sum_probs=75.9
Q ss_pred hhhhhhhHH----HHHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 160 ASPIKRQRD----ELDQFLQAQGEQLRRALA----EKRQ-RHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAA 230 (356)
Q Consensus 160 ~~~l~qQ~~----EID~~i~~q~ErLR~~L~----E~rq-rh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlr 230 (356)
.++|+-|+. .+-.|.+.|.+.++..++ |.+. .+-...+.++...+-+||.+...-+.+..++..+++|-=+
T Consensus 327 ~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~ 406 (493)
T KOG0804|consen 327 TSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENK 406 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554443 444555566666666554 4555 6677788889999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHH
Q 018409 231 QLSVEAQVWQAKARAQEA-----------TAASLQAQLQQAIM 262 (356)
Q Consensus 231 ql~~E~QaWq~~A~~nEA-----------~a~~Lra~LqQ~l~ 262 (356)
.|...-+.|+..++.-|. .+..|+.+|.-++.
T Consensus 407 ~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 407 KLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 999999999988755444 46677766666554
No 51
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.43 E-value=0.66 Score=46.10 Aligned_cols=41 Identities=27% Similarity=0.664 Sum_probs=32.6
Q ss_pred ccccccccccccceEEeCC--CCcccchhhHh-hCCCCCCCccccC
Q 018409 306 GPACKGCRKRVASVVLLPC--RHLCVCTECDR-VVQACPLCFNVRD 348 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPC--rHlclC~~C~~-~l~~CPvCr~~i~ 348 (356)
-..|.+|+..-.--++ -| ||+ +|..|.. ....||.|+.++.
T Consensus 48 lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCccccccc
Confidence 4589999987665554 35 799 8999994 4579999999987
No 52
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.42 E-value=0.43 Score=47.46 Aligned_cols=47 Identities=28% Similarity=0.518 Sum_probs=39.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC----CCCCCCccccCceEEE
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSVEV 353 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~sV~V 353 (356)
...|.+|..--.+-|+--|+|. +|..|+..- ..|++|...+.++..+
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~~ 291 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFNV 291 (313)
T ss_pred CccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccch
Confidence 3469999998888888899999 899998762 5899999999887654
No 53
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=81.45 E-value=0.46 Score=48.89 Aligned_cols=41 Identities=24% Similarity=0.530 Sum_probs=0.0
Q ss_pred cccceEEeCCCCcccchh----hHhh--------CCCCCCCccccCc---eEEEee
Q 018409 315 RVASVVLLPCRHLCVCTE----CDRV--------VQACPLCFNVRDS---SVEVFL 355 (356)
Q Consensus 315 ~~~~vlLlPCrHlclC~~----C~~~--------l~~CPvCr~~i~~---sV~V~l 355 (356)
.+.+..|.||||.|.=+. +... ...||.|-.++.+ +|+.+|
T Consensus 356 ~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 356 GPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------------
T ss_pred CCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence 446678899999963111 1111 2499999999876 566544
No 54
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=80.96 E-value=33 Score=35.56 Aligned_cols=40 Identities=30% Similarity=0.531 Sum_probs=30.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q 018409 155 LSDDLASPIKRQRDELDQFLQAQGE----------QLRRALAEKRQRHYR 194 (356)
Q Consensus 155 l~d~l~~~l~qQ~~EID~~i~~q~E----------rLR~~L~E~rqrh~r 194 (356)
-||||.++|++.+..+-+-|.++.+ +|-+.|+|-|+||-.
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeq 185 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQ 185 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999888877777776654 455678888999843
No 55
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.57 E-value=1.2 Score=43.59 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=34.8
Q ss_pred cccccccccc----ccceEEeCCCCcccchhhHhhC----CCCCCCccccCc
Q 018409 306 GPACKGCRKR----VASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~----~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~ 349 (356)
+..|.+|.+. ..+++|-||||+ +|.+|...+ ..||||-.+...
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 4589999875 445789999999 799998885 499999887653
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=80.37 E-value=0.55 Score=44.62 Aligned_cols=46 Identities=26% Similarity=0.473 Sum_probs=38.6
Q ss_pred cccccccccccceEEeCCCCcccchhhHhh----CCCCCCCccccCceEEE
Q 018409 307 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEV 353 (356)
Q Consensus 307 ~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~sV~V 353 (356)
..|.+|...-.+-++--|||. +|..|+.. -..|-+|.....+...|
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 489999998888888899999 89999876 36999999887776544
No 57
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=79.93 E-value=0.88 Score=45.79 Aligned_cols=40 Identities=33% Similarity=0.891 Sum_probs=29.7
Q ss_pred cccccccccccceE--EeCCCCcccchhhHhh--CCCCCCCccccC
Q 018409 307 PACKGCRKRVASVV--LLPCRHLCVCTECDRV--VQACPLCFNVRD 348 (356)
Q Consensus 307 ~~C~vC~~~~~~vl--LlPCrHlclC~~C~~~--l~~CPvCr~~i~ 348 (356)
-.|..|.. +.-|+ ++||.|. +|.+|+.. .+.||.|.-.|.
T Consensus 91 HfCd~Cd~-PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDF-PIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCC-cceeeecccccchh-hhhhhhhcCccccCcCcccHHH
Confidence 36777854 33333 6799999 99999877 469999987654
No 58
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=78.92 E-value=1.8 Score=43.84 Aligned_cols=52 Identities=21% Similarity=0.487 Sum_probs=32.5
Q ss_pred CCccccccccccc-------------------ccceEEeCCCCcccchhhH-hh-----------CCCCCCCccccCc--
Q 018409 303 PVSGPACKGCRKR-------------------VASVVLLPCRHLCVCTECD-RV-----------VQACPLCFNVRDS-- 349 (356)
Q Consensus 303 ~~~~~~C~vC~~~-------------------~~~vlLlPCrHlclC~~C~-~~-----------l~~CPvCr~~i~~-- 349 (356)
+...+.|.+|+.- +.+..|-||||+|.=+.-. +. -..||.|-....+
T Consensus 338 g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~ 417 (429)
T KOG3842|consen 338 GQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQ 417 (429)
T ss_pred CcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCC
Confidence 3456788888763 3445667999996432220 11 1399999887654
Q ss_pred -eEEEe
Q 018409 350 -SVEVF 354 (356)
Q Consensus 350 -sV~V~ 354 (356)
.|+++
T Consensus 418 ~~ikli 423 (429)
T KOG3842|consen 418 GYIKLI 423 (429)
T ss_pred ceEEEE
Confidence 55544
No 59
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=76.93 E-value=2.5 Score=33.00 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=31.7
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhh-----CCCCCCCccccCc
Q 018409 305 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~ 349 (356)
....|.+|++--.+-+++||||. .+..|-.. -..||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 45789999999999999999977 78888544 3579999988765
No 60
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.66 E-value=1.2 Score=47.35 Aligned_cols=44 Identities=23% Similarity=0.541 Sum_probs=30.0
Q ss_pred ccccccccccc-----------------ccceEEeCCCCcccchhhHhh-C---C-CCCCCccccCc
Q 018409 305 SGPACKGCRKR-----------------VASVVLLPCRHLCVCTECDRV-V---Q-ACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~-----------------~~~vlLlPCrHlclC~~C~~~-l---~-~CPvCr~~i~~ 349 (356)
....|+||+.. .+..+|-||.|+ .=..|-.. | + .||+||+++..
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34689999872 123456699998 56667443 2 2 89999998753
No 61
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.05 E-value=21 Score=38.08 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=16.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~ 234 (356)
-|+++++|+++|++||=+|..
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~i 397 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVMI 397 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888877766
No 62
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.81 E-value=56 Score=37.64 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHH
Q 018409 212 EAEVEKATRRNAELEARAAQLSVEAQVWQ-------AKARAQEATAASLQAQLQQA 260 (356)
Q Consensus 212 EeEIera~rrn~ELEERlrql~~E~QaWq-------~~A~~nEA~a~~Lra~LqQ~ 260 (356)
|+=++...-||.+||||++.|+.|....- .++..|......||..|+.+
T Consensus 447 E~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 447 EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778899999999999988664433 45566666677777777775
No 63
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=73.62 E-value=0.99 Score=50.18 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=32.7
Q ss_pred cccccccccccceEE---eCCCCcccchhhHhh----CCCCCCCccccCceE
Q 018409 307 PACKGCRKRVASVVL---LPCRHLCVCTECDRV----VQACPLCFNVRDSSV 351 (356)
Q Consensus 307 ~~C~vC~~~~~~vlL---lPCrHlclC~~C~~~----l~~CPvCr~~i~~sV 351 (356)
..|.+|...-.+-+. .+|.|. +|..|... ..+||+||..+..++
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheee
Confidence 467777766555443 489999 99999766 479999998766554
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=72.89 E-value=76 Score=33.45 Aligned_cols=70 Identities=27% Similarity=0.358 Sum_probs=40.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 161 SPIKRQRDELDQFLQAQGEQLRRALAEKRQRH-----YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 161 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh-----~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~ 234 (356)
++++++..|.|+=+- +++..|++.=+++ ...++.|--+++-.+|-+||.||.+..+.|-.|.|+.-+..+
T Consensus 2 ~~~~s~~s~~dqr~~----~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 2 APLYSQKSENDQRLI----DLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred chhhhhhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677664322 2222222222222 223445555677778999999999999998877655444443
No 65
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=72.64 E-value=17 Score=31.03 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 195 ALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 236 (356)
Q Consensus 195 ~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~ 236 (356)
..|...-...-.++++...++++...+..++.+.++.|..|+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444445567888999999999999999999999998775
No 66
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=72.51 E-value=43 Score=29.31 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 204 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 204 ~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
...+++.++.++++....+..|++++..+..|...++..-+.-+.....+...+..
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~ 112 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQ 112 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888888888888888888888877777665555555444444433
No 67
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=72.02 E-value=5 Score=31.13 Aligned_cols=31 Identities=39% Similarity=0.438 Sum_probs=26.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018409 213 AEVEKATRRNAELEARAAQLSVEAQVWQAKA 243 (356)
Q Consensus 213 eEIera~rrn~ELEERlrql~~E~QaWq~~A 243 (356)
+|++-.+.+..||++|..+|..||...+..+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4888899999999999999999998776543
No 68
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=71.83 E-value=46 Score=26.06 Aligned_cols=84 Identities=18% Similarity=0.289 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHhHH
Q 018409 175 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ------VWQAKARAQEA 248 (356)
Q Consensus 175 ~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~Q------aWq~~A~~nEA 248 (356)
+...+++...|.+.++.|.+.|...... ..-=++.|.-...+++....+..+|+.|..... .+....+-...
T Consensus 13 ~~~i~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~~~~~~~ri~~n 90 (103)
T PF00804_consen 13 REDIDKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEEPSSNEVRIRKN 90 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT--SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcHHHHHHHH
Confidence 3445566777777777777766655532 122233444455567778888889998888854 33344455555
Q ss_pred HHHHHHHHHHHH
Q 018409 249 TAASLQAQLQQA 260 (356)
Q Consensus 249 ~a~~Lra~LqQ~ 260 (356)
...+|...+..+
T Consensus 91 q~~~L~~kf~~~ 102 (103)
T PF00804_consen 91 QVQALSKKFQEV 102 (103)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666665544
No 69
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=71.30 E-value=1e+02 Score=29.87 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 166 QRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 166 Q~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~ 234 (356)
=+.|||+-|... +.....+....+......++.+.+.++........+++.++.++..
T Consensus 106 F~~eI~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 163 (301)
T PF14362_consen 106 FEKEIDQKLDEI-----------RQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQ 163 (301)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777555444 3333444444444444555555555665555555555555555544
No 70
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=70.31 E-value=48 Score=33.73 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 018409 222 NAELEARAAQLSVEAQVWQAK 242 (356)
Q Consensus 222 n~ELEERlrql~~E~QaWq~~ 242 (356)
.+.|||..++|..|..+++.+
T Consensus 379 k~kle~~rr~Leee~~~f~~r 399 (406)
T KOG3859|consen 379 KKKLEEKRKQLEEEVNAFQRR 399 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666654
No 71
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=69.62 E-value=2 Score=47.19 Aligned_cols=40 Identities=35% Similarity=0.745 Sum_probs=34.0
Q ss_pred cccccccccccceEEeCCCCcccchhhHhhC------CCCCCCccccC
Q 018409 307 PACKGCRKRVASVVLLPCRHLCVCTECDRVV------QACPLCFNVRD 348 (356)
Q Consensus 307 ~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l------~~CPvCr~~i~ 348 (356)
..|.+|.+ ..++++.+|+|. .|.+|-... ..||+|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 78999999 888889999999 899996652 37999998654
No 72
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=68.56 E-value=1.1e+02 Score=29.02 Aligned_cols=28 Identities=11% Similarity=0.372 Sum_probs=15.3
Q ss_pred hhhh-hhhhhhhHHHHHHHHHHHHHHHHH
Q 018409 156 SDDL-ASPIKRQRDELDQFLQAQGEQLRR 183 (356)
Q Consensus 156 ~d~l-~~~l~qQ~~EID~~i~~q~ErLR~ 183 (356)
..|| ..+|+-|+.-+|++|....+|+..
T Consensus 102 ~~eirR~~LeAQka~~eR~ia~~~~ra~~ 130 (192)
T PF11180_consen 102 DVEIRRAQLEAQKAQLERLIAESEARANR 130 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445 345666666666666655544443
No 73
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=68.15 E-value=59 Score=25.83 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 018409 205 ARLLREKEAEVEKATR 220 (356)
Q Consensus 205 ~~rLReKEeEIera~r 220 (356)
.++|+|||+.|+....
T Consensus 4 ~~~l~EKDe~Ia~L~e 19 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLME 19 (74)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 4566777776644433
No 74
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=67.25 E-value=2 Score=43.33 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=39.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhh-----CCCCCCCccccCceEEE
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVEV 353 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~sV~V 353 (356)
.-.|..|+.+..-+.+.||+|-++|..|... ...||+|.........|
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 4589999999999999999999999887544 45799998876655443
No 75
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=66.34 E-value=2.2e+02 Score=32.84 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 258 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~Lq 258 (356)
+.|--.+.-|..+.+.|.+|.+.|.++.-+...|-.+.++..-+...|+..|.
T Consensus 452 kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~ 504 (980)
T KOG0980|consen 452 KQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA 504 (980)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333444456678889999999999999999998887777766666665543
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=66.05 E-value=92 Score=35.01 Aligned_cols=53 Identities=28% Similarity=0.358 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 202 ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 257 (356)
Q Consensus 202 ~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 257 (356)
..+.+|||+|+-|-+.+.+|+-++ |..|.-|.+....+-...|.|-..++-++
T Consensus 473 s~iIkKLRAk~ke~etl~~K~ge~---i~~L~sE~~~lk~il~~Kee~Ek~~~E~I 525 (961)
T KOG4673|consen 473 SAIIKKLRAKIKEAETLEEKKGEL---ITKLQSEENKLKSILRDKEETEKLLQETI 525 (961)
T ss_pred HHHHHHHHHHhhhhhHHHHHhhhH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 378899999999998887776543 45555555555555555555444444333
No 77
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=64.90 E-value=1.6e+02 Score=29.76 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=43.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018409 159 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEES-------IARLLREKEAEVEKATRRNAELEARAAQ 231 (356)
Q Consensus 159 l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~-------~~~rLReKEeEIera~rrn~ELEERlrq 231 (356)
..++|.+.+.|+.-+|+.+..+|-..++ ++=+.||.+|+.. ++.+|.-.|+-|.||+ -.-.|.|||+.
T Consensus 25 av~qL~~~r~~teelIr~rVrq~V~hVq----aqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir-~G~~LVekM~~ 99 (324)
T PF12126_consen 25 AVSQLGRARADTEELIRARVRQVVAHVQ----AQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIR-TGGALVEKMKL 99 (324)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hHHHHHHHHHH
Confidence 3678999999999999999887765554 4457888888853 3444444444444442 23445555543
No 78
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=64.69 E-value=83 Score=27.04 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQ---RHYRALLGAAEESIARLLREKE----AEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rq---rh~r~ll~avE~~~~~rLReKE----eEIera~rrn~ELEERlrql~ 233 (356)
.-||.++..-.+.++..+.+.+. .+...+=.+++..+.+-|...+ +||+.+..|..+|+.+++.|.
T Consensus 44 ~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 44 KRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555554 3334555566666666665554 788888888888888887764
No 79
>smart00338 BRLZ basic region leucin zipper.
Probab=63.95 E-value=61 Score=24.47 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQVW 239 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~QaW 239 (356)
+.+.|.+++.+...|.+|..++..|..|...+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555443
No 80
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.10 E-value=1.6e+02 Score=28.88 Aligned_cols=90 Identities=28% Similarity=0.331 Sum_probs=51.9
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018409 150 SLLSFLSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 229 (356)
Q Consensus 150 ~~~s~l~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERl 229 (356)
..++ ++|-..+.+..++.-||.||..--.++-..+.+--++-.+.. --++.+..-|++-+.|+.+-+....|=+++.
T Consensus 12 t~l~-l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~--~e~e~l~~~l~etene~~~~neL~~ek~~~q 88 (246)
T KOG4657|consen 12 TMLS-LGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQ--VELENLKADLRETENELVKVNELKTEKEARQ 88 (246)
T ss_pred HHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 677788999999999999998773333333333322111111 1122344557777777776666555555555
Q ss_pred HHHHHHHHHHHHH
Q 018409 230 AQLSVEAQVWQAK 242 (356)
Q Consensus 230 rql~~E~QaWq~~ 242 (356)
-.+..|.-+.|..
T Consensus 89 ~~ieqeik~~q~e 101 (246)
T KOG4657|consen 89 MGIEQEIKATQSE 101 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 81
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.23 E-value=1.6e+02 Score=35.01 Aligned_cols=90 Identities=24% Similarity=0.295 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 247 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nE 247 (356)
.++|.=+....++++....+..+ ..++|+----.-+..++.++++++.++.+++..|++.++-+..++ +-+.-..
T Consensus 464 ~~~~keL~e~i~~lk~~~~el~~-~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~----~~~~~~~ 538 (1317)
T KOG0612|consen 464 EEMDKELEETIEKLKSEESELQR-EQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKN----DNAADSL 538 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 35666666666777666666654 223333222223345666777777777777777776666553333 2333345
Q ss_pred HHHHHHHHHHHHHHH
Q 018409 248 ATAASLQAQLQQAIM 262 (356)
Q Consensus 248 A~a~~Lra~LqQ~l~ 262 (356)
..++.|+.+|+....
T Consensus 539 ~kv~~~rk~le~~~~ 553 (1317)
T KOG0612|consen 539 EKVNSLRKQLEEAEL 553 (1317)
T ss_pred hhHHHHHHHHHHhhh
Confidence 567788888887544
No 82
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=62.05 E-value=3.2 Score=31.06 Aligned_cols=43 Identities=21% Similarity=0.636 Sum_probs=24.1
Q ss_pred cccccccccccceEEeCCCCcccchhhHhhC----CCCCCCccccCceE
Q 018409 307 PACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSV 351 (356)
Q Consensus 307 ~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~sV 351 (356)
.-|+.|+-.....+ -|.---+|-.|-..| ..||+|..+....+
T Consensus 3 ~nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 3 YNCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ----SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred ccChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 35899988877754 576556999998876 59999998876544
No 83
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=61.99 E-value=3 Score=37.28 Aligned_cols=44 Identities=30% Similarity=0.711 Sum_probs=33.7
Q ss_pred cccccccccccceEEe-C---CCCcccchhhHhhC-------CCCCCCccccCceE
Q 018409 307 PACKGCRKRVASVVLL-P---CRHLCVCTECDRVV-------QACPLCFNVRDSSV 351 (356)
Q Consensus 307 ~~C~vC~~~~~~vlLl-P---CrHlclC~~C~~~l-------~~CPvCr~~i~~sV 351 (356)
-+|-+|.+...+--|| | || .-+|..|.+.+ ..||+|+++..++-
T Consensus 81 YeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4799998887776555 3 66 66999998775 59999999877653
No 84
>PRK10884 SH3 domain-containing protein; Provisional
Probab=61.89 E-value=75 Score=30.04 Aligned_cols=32 Identities=6% Similarity=0.149 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSVEAQ 237 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~E~Q 237 (356)
.++.+.+.+|.....+|.+|.+.+..+..|+.
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555556666666665555555443
No 85
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=61.74 E-value=2.2e+02 Score=30.21 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018409 222 NAELEARAAQLSVEAQVWQAKARAQEA 248 (356)
Q Consensus 222 n~ELEERlrql~~E~QaWq~~A~~nEA 248 (356)
..+|..+|+.|..-...|......+..
T Consensus 380 l~~~~~~~~~le~~~~~~~~~~~~~~~ 406 (582)
T PF09731_consen 380 LAELNSRLKALEEALDARSEAEDENRR 406 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666665555544
No 86
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=61.70 E-value=2.3 Score=41.60 Aligned_cols=39 Identities=26% Similarity=0.757 Sum_probs=27.8
Q ss_pred cccccccccc---ccc--eEEeC-CCCcccchhhHhhC-----CCCC--CCcc
Q 018409 306 GPACKGCRKR---VAS--VVLLP-CRHLCVCTECDRVV-----QACP--LCFN 345 (356)
Q Consensus 306 ~~~C~vC~~~---~~~--vlLlP-CrHlclC~~C~~~l-----~~CP--vCr~ 345 (356)
...|.+|..- ..+ +++-| |.|. +|..|...+ ..|| .|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 4579999652 233 34458 9999 899998774 4899 6754
No 87
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=61.40 E-value=1.1e+02 Score=26.35 Aligned_cols=61 Identities=31% Similarity=0.393 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 174 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 236 (356)
Q Consensus 174 i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~ 236 (356)
|+.|+.-|+.++-|-+.... .|-..+... -..||-.+.|++...-+|.-|+-|+..|..|-
T Consensus 10 LraQ~~vLKKaVieEQ~k~~-~L~e~Lk~k-e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El 70 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNA-ELKEQLKEK-EQALRKLEQENDSLTFRNQQLTKRVEVLQEEL 70 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777766554432 111111111 12355566677777777777777776655543
No 88
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.52 E-value=82 Score=25.55 Aligned_cols=31 Identities=35% Similarity=0.541 Sum_probs=22.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLSVEAQVWQAKAR 244 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~E~QaWq~~A~ 244 (356)
|...+..-+-+|+-+-.||..|-..||.+-+
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerlr 70 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERLR 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566777777899999999998843
No 89
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=60.49 E-value=86 Score=25.60 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018409 204 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 204 ~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq 240 (356)
.-.+|+.|++||++.+.....|..+|......+-.-+
T Consensus 10 L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq 46 (76)
T PF11544_consen 10 LKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQ 46 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999888888876665554433
No 90
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=60.22 E-value=44 Score=29.14 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=27.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018409 213 AEVEKATRRNAELEARAAQLSVEAQVWQAKAR 244 (356)
Q Consensus 213 eEIera~rrn~ELEERlrql~~E~QaWq~~A~ 244 (356)
||+|-.+.+..||+||..+|+.|+...+..+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 48888888899999999999999998877653
No 91
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=59.95 E-value=84 Score=35.55 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 176 AQGEQLRRALAEKRQR--HYRALLGAAEE---SIARLLREKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 176 ~q~ErLR~~L~E~rqr--h~r~ll~avE~---~~~~rLReKEeEIera~rrn~ELEERlrql~~ 234 (356)
+++.|++..++|.-.. ++.-=|.++|. ...--||++|+||+|.+..+.-|.--+++|-.
T Consensus 494 ~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 494 IETTRIKIEVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577777777776432 23333444443 23345999999999999999889888877755
No 92
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=59.64 E-value=1.5e+02 Score=32.21 Aligned_cols=68 Identities=29% Similarity=0.311 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHH
Q 018409 176 AQGEQLRRALAEKRQRHYRA--LLGAAEESI---ARLLREKEAEVEKATRRNAELEARAAQLSVEAQ-VWQAKA 243 (356)
Q Consensus 176 ~q~ErLR~~L~E~rqrh~r~--ll~avE~~~---~~rLReKEeEIera~rrn~ELEERlrql~~E~Q-aWq~~A 243 (356)
+...+|+-.+.+.|+++--+ .+..++..+ ..+|=++++|+.-++++...||+-++.|..|+- .|-.++
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44556666666666665544 333333332 467778888999999999999998888888873 344433
No 93
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=59.21 E-value=45 Score=31.72 Aligned_cols=48 Identities=27% Similarity=0.463 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 018409 179 EQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEA 227 (356)
Q Consensus 179 ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEE 227 (356)
+.-|..|+|+|+.-.-..|.-.|. .-+.+-.|++||.++...|.+|.|
T Consensus 106 e~YWk~lAE~RR~AL~eaL~ENe~-Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 106 ENYWKELAEERRKALEEALEENEK-LHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666333333322222 334455667777666666655554
No 94
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=58.72 E-value=2.3e+02 Score=31.65 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=32.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018409 214 EVEKATRRNAELEARAAQLSV-----------EAQVWQAKARAQEATAASLQAQLQQAIMS 263 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~-----------E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 263 (356)
.++++..+-..|+.|++.+.. .-..|...-+.-...+..|++.|+++...
T Consensus 601 R~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 601 RYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777788888776643 22556655555555577788888886543
No 95
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=58.65 E-value=2.8e+02 Score=30.30 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 248 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA 248 (356)
....|++.+...+.++.+|+++|..+...+....++++.
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~ 241 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEK 241 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666655555544443
No 96
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=58.51 E-value=53 Score=32.27 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=13.0
Q ss_pred hhhhhhhhhhhhHHHHHHH
Q 018409 155 LSDDLASPIKRQRDELDQF 173 (356)
Q Consensus 155 l~d~l~~~l~qQ~~EID~~ 173 (356)
.+|.+..+|++--.++|.+
T Consensus 158 ~Gd~l~~eLqkr~~~v~~l 176 (289)
T COG4985 158 DGDPLERELQKRLLEVETL 176 (289)
T ss_pred cCcHHHHHHHHHHHHHHHH
Confidence 4677778888766666643
No 97
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=57.64 E-value=96 Score=24.71 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=16.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 018409 220 RRNAELEARAAQLSVEAQVWQAK 242 (356)
Q Consensus 220 rrn~ELEERlrql~~E~QaWq~~ 242 (356)
..|.+|++...+|..|-.+|+.+
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~r 61 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQER 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777888876
No 98
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.23 E-value=1e+02 Score=32.89 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=22.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 158 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQR 191 (356)
Q Consensus 158 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqr 191 (356)
.|.+++++-+.|++.+++ ++++|+..-+..|+|
T Consensus 63 Tlva~~k~~r~~~~~l~~-~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLIS-ENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 456778888888888764 566666666655544
No 99
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.10 E-value=1.4e+02 Score=31.30 Aligned_cols=50 Identities=32% Similarity=0.409 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018409 172 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRN 222 (356)
Q Consensus 172 ~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn 222 (356)
.|--.|.|||--.|.|.-++|...+. -+.+.+++.+|..+.|.++++-|.
T Consensus 126 ~~~~aq~erlvgeiaenerqhavema-elsekia~emr~lede~~r~~mrt 175 (637)
T KOG4421|consen 126 IFEEAQKERLVGEIAENERQHAVEMA-ELSEKIADEMRDLEDETERIAMRT 175 (637)
T ss_pred HHHHHHhhHHHHHHHhhhHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56668999999999999999988875 455688999999999999998764
No 100
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.83 E-value=43 Score=28.28 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 241 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~ 241 (356)
.++++...+++.+..++.+|+++-+.|..|-..|+.
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467778888888888888888888888888888876
No 101
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=56.45 E-value=2.1e+02 Score=28.25 Aligned_cols=80 Identities=25% Similarity=0.299 Sum_probs=42.3
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 165 RQRDELDQF---LQAQGEQLRRALAEKRQRHYRALLGAAEE----SIARLLR---EKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 165 qQ~~EID~~---i~~q~ErLR~~L~E~rqrh~r~ll~avE~----~~~~rLR---eKEeEIera~rrn~ELEERlrql~~ 234 (356)
.|.+|+|-+ ++...+.|-..+.++++.=..+++..+-. ++..+++ .-..||..-+.-..+|+|.|..|.+
T Consensus 135 ~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~ 214 (258)
T PF15397_consen 135 SQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRA 214 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666644 44444444444444444333333322222 2222322 1234666667777888888888888
Q ss_pred HHHHHHHHHH
Q 018409 235 EAQVWQAKAR 244 (356)
Q Consensus 235 E~QaWq~~A~ 244 (356)
|.+.-+.-+.
T Consensus 215 eV~~L~~~~~ 224 (258)
T PF15397_consen 215 EVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHhhc
Confidence 7776665544
No 102
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=55.71 E-value=46 Score=32.07 Aligned_cols=48 Identities=29% Similarity=0.332 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRN-------AELEARAAQLSVEAQVWQAKARAQEATAASL 253 (356)
Q Consensus 206 ~rLReKEeEIera~rrn-------~ELEERlrql~~E~QaWq~~A~~nEA~a~~L 253 (356)
.||++.++|..++.... ..|++.++++..|...-...+..-+.+...|
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL 66 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRL 66 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444 4455555555555554444444444443333
No 103
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=55.46 E-value=86 Score=25.13 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=12.6
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~ 233 (356)
.+.+++.+..+||.||..|.
T Consensus 58 ~L~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 58 VLARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555666667777776654
No 104
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.45 E-value=1.5 Score=44.69 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=34.4
Q ss_pred cccccccccccccc-eEEeCCCCcccchhhHhhC-----CCCCCCccccCc
Q 018409 305 SGPACKGCRKRVAS-VVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~~~~-vlLlPCrHlclC~~C~~~l-----~~CPvCr~~i~~ 349 (356)
....|.+|.+--.. +...-|.|. +|..|.+.. ..||-||....+
T Consensus 42 ~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccc
Confidence 35689999886443 556789999 999998873 599999986654
No 105
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=54.88 E-value=10 Score=27.77 Aligned_cols=36 Identities=28% Similarity=0.721 Sum_probs=22.8
Q ss_pred ccccccc--cccceEEeCCC-----CcccchhhHhh------CCCCCCCc
Q 018409 308 ACKGCRK--RVASVVLLPCR-----HLCVCTECDRV------VQACPLCF 344 (356)
Q Consensus 308 ~C~vC~~--~~~~vlLlPCr-----HlclC~~C~~~------l~~CPvCr 344 (356)
.|+||++ .+.+.++.||. |+ +=..|... ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4889986 56667888995 22 12345332 24899985
No 106
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=54.69 E-value=3e+02 Score=29.64 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 018409 204 IARLLREKEAEVEKATRRNAELEARAA----QLSVEA-----------QVWQAKARAQEATAASLQAQLQQAIMSG 264 (356)
Q Consensus 204 ~~~rLReKEeEIera~rrn~ELEERlr----ql~~E~-----------QaWq~~A~~nEA~a~~Lra~LqQ~l~~~ 264 (356)
+-+-|-+||+||+|+.....|||.-.. .|..|- ..+|..-+.|.+.---|+..|+.++++.
T Consensus 451 mdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqv 526 (527)
T PF15066_consen 451 MDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQV 526 (527)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 446788999999999999888884432 222221 2255666777777788888888888764
No 107
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=54.26 E-value=3.2 Score=44.63 Aligned_cols=41 Identities=22% Similarity=0.556 Sum_probs=34.1
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC---------CCCCCCcccc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV---------QACPLCFNVR 347 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l---------~~CPvCr~~i 347 (356)
...|.+|.+...+.+.-.|.|. +|+.|.... -+||+|....
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 4689999999999999999998 899997441 3999997643
No 108
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.94 E-value=1.1e+02 Score=33.81 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=7.2
Q ss_pred cccccccchhHH
Q 018409 106 TGLRLSFGDQQQ 117 (356)
Q Consensus 106 TGLrLs~~~~~~ 117 (356)
-++.++++|+..
T Consensus 332 r~~~~~~~ddH~ 343 (652)
T COG2433 332 RTLKISVSDDHE 343 (652)
T ss_pred hhcCCCCCCchH
Confidence 345667776654
No 109
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.67 E-value=1.3e+02 Score=24.84 Aligned_cols=30 Identities=30% Similarity=0.505 Sum_probs=23.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLSVEAQVWQAKA 243 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~E~QaWq~~A 243 (356)
|++.++.-..+|+..-.+|..|-++|+.+-
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556788889999999999999883
No 110
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=53.35 E-value=3.4e+02 Score=31.26 Aligned_cols=27 Identities=44% Similarity=0.448 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018409 211 KEAEVEKATRRNAELEARAAQLSVEAQ 237 (356)
Q Consensus 211 KEeEIera~rrn~ELEERlrql~~E~Q 237 (356)
|.++.|+..||.+|=|+|.+|-..|.+
T Consensus 954 k~~k~e~e~kRK~eEeqr~~qee~e~~ 980 (1259)
T KOG0163|consen 954 KRAKAEMETKRKAEEEQRKAQEEEERR 980 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 334555566666666666666555443
No 111
>PRK04863 mukB cell division protein MukB; Provisional
Probab=52.89 E-value=4.6e+02 Score=32.03 Aligned_cols=33 Identities=33% Similarity=0.363 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~QaWq 240 (356)
+.+.+++++.+..+..++++++..+..+...|+
T Consensus 364 Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 364 LEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555555554
No 112
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=52.58 E-value=1.2e+02 Score=26.62 Aligned_cols=71 Identities=31% Similarity=0.413 Sum_probs=35.3
Q ss_pred CCCcchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 018409 147 QSPSLLSFLSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESI----ARLLREKEAEVEKATRRN 222 (356)
Q Consensus 147 ~~~~~~s~l~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~----~~rLReKEeEIera~rrn 222 (356)
.|...+.|| |+|-. .++...++|.. .+++.++..+.+.|. -|.+++..+ ..+--..+..|..+.+|.
T Consensus 65 nP~tvLALL-DElE~-~~~~i~~~~~~--~e~~~~a~~~~~l~~-----~Le~ae~~~~~~~~~~~~~~e~~~~~~~~ri 135 (139)
T PF13935_consen 65 NPATVLALL-DELER-AQQRIAELEQE--CENEDIALDVQKLRV-----ELEAAEKRIAAELAEQAEAYEGEIADYAKRI 135 (139)
T ss_pred cchHHHHHH-HHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 355555532 32321 23334455555 566666666666654 334444333 233334555666666666
Q ss_pred HHHH
Q 018409 223 AELE 226 (356)
Q Consensus 223 ~ELE 226 (356)
+|||
T Consensus 136 aEle 139 (139)
T PF13935_consen 136 AELE 139 (139)
T ss_pred HhcC
Confidence 6654
No 113
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=52.45 E-value=61 Score=32.54 Aligned_cols=42 Identities=14% Similarity=0.378 Sum_probs=25.5
Q ss_pred ccccccccccccceEEeCC----CC-cccchhhHhh--C--CCCCCCcccc
Q 018409 306 GPACKGCRKRVASVVLLPC----RH-LCVCTECDRV--V--QACPLCFNVR 347 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPC----rH-lclC~~C~~~--l--~~CPvCr~~i 347 (356)
...|.||++.+..-++..- |+ +..|..|... + ..||.|....
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~ 234 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK 234 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC
Confidence 4578888888754333222 11 2368888654 2 3888888754
No 114
>smart00338 BRLZ basic region leucin zipper.
Probab=51.43 E-value=1e+02 Score=23.20 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 221 RNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 257 (356)
Q Consensus 221 rn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 257 (356)
...+||.++..|..|+..++.....-+.-+..|+..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568999999999999998887776666666666544
No 115
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=51.32 E-value=1.8e+02 Score=25.99 Aligned_cols=98 Identities=11% Similarity=0.143 Sum_probs=51.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHH-HHHHHHHHhHHHHHHH--
Q 018409 156 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHY--RALLGAAEESIARLLRE-KEA-EVEKATRRNAELEARA-- 229 (356)
Q Consensus 156 ~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~--r~ll~avE~~~~~rLRe-KEe-EIera~rrn~ELEERl-- 229 (356)
+=.|+..|.++..++|.= .+.|+..|.+.-+.+. ..++..+-.....+.+. ++. -|.. .-..+|+.++
T Consensus 20 gC~i~~~L~k~~~~v~~~----i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~--~~s~~l~~~~~~ 93 (146)
T PF08702_consen 20 GCGIQDFLDKYERDVDKD----IQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYN--QYSKSLRKMIIY 93 (146)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCH
T ss_pred cchHHHHHHHHccchHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHH--HHHHHHHHHHHH
Confidence 336677777777777654 4567777777666653 44556666666566655 222 2322 2233445444
Q ss_pred ------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 230 ------AQLSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 230 ------rql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
-.-..--+.-|.+-..+...+.-|+....+
T Consensus 94 ~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~ 129 (146)
T PF08702_consen 94 ILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQ 129 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112244555555555555555444444
No 116
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=50.70 E-value=3.4e+02 Score=28.89 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=52.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 162 PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEE------SIARLLREKEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 162 ~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~------~~~~rLReKEeEIera~rrn~ELEERlrql~~E 235 (356)
+|++-+.|-|+||..++.---.+|+-++..|--.+-.-+|. .+-..-|+--+|++...|...-|-|...|-+.|
T Consensus 364 ELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLE 443 (593)
T KOG4807|consen 364 ELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLE 443 (593)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677788888777777777777777777666655554 222233455677888887777777777666666
Q ss_pred HHHH
Q 018409 236 AQVW 239 (356)
Q Consensus 236 ~QaW 239 (356)
+.+.
T Consensus 444 nahL 447 (593)
T KOG4807|consen 444 NAHL 447 (593)
T ss_pred HHHH
Confidence 6543
No 117
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=50.51 E-value=2.1e+02 Score=26.45 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=21.2
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhCCCCCCCccccCceEE
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVE 352 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~~CPvCr~~i~~sV~ 352 (356)
...|.+| ||+ |.. ..-..||+|..++..+..
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~P~~CPiCga~k~~F~~ 164 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EAPEVCPICGAPKEKFEK 164 (166)
T ss_pred EEEcCCC------------CCc--ccC--CCCCcCCCCCChHHHhhc
Confidence 3678775 666 344 345799999998876543
No 118
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=50.47 E-value=77 Score=31.81 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=19.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018409 213 AEVEKATRRNAELEARAAQLSVEAQVWQAK 242 (356)
Q Consensus 213 eEIera~rrn~ELEERlrql~~E~QaWq~~ 242 (356)
-|++-..+||.+|.+++..|.-|-+-.+++
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777776665544443
No 119
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.41 E-value=59 Score=27.44 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~E 235 (356)
+.+.+.+.|+++...+|.+|++.++.|...
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 445567778888888888888888888763
No 120
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=50.25 E-value=1.6e+02 Score=26.95 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 209 REKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 209 ReKEeEIera~rrn~ELEERlrql~~ 234 (356)
+.||+|..+...|..+-+++++++..
T Consensus 101 kkKD~Ea~~L~~KLkeEq~kv~~ME~ 126 (152)
T PF11500_consen 101 KKKDAEAMRLAEKLKEEQEKVAEMER 126 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888887766543
No 121
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=49.71 E-value=3.2e+02 Score=28.35 Aligned_cols=77 Identities=29% Similarity=0.374 Sum_probs=46.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q 018409 161 SPIKRQRDELDQFLQAQGEQLRRALAEKRQ---------RHYRALLGAAEE----------SIARLLREKEAEVEKATRR 221 (356)
Q Consensus 161 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~rq---------rh~r~ll~avE~----------~~~~rLReKEeEIera~rr 221 (356)
.-++.++.|.++ |+.|+++|...|-..|. .|.-.++.-.++ +..+--+|||+|-...+|.
T Consensus 92 es~~e~q~e~~q-L~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 92 ESVEERQQESEQ-LQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 345666667776 47777777766655442 334444444333 3345567788877777776
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018409 222 NAELEARAAQLSVEAQV 238 (356)
Q Consensus 222 n~ELEERlrql~~E~Qa 238 (356)
.+|--.+..-|..|-|+
T Consensus 171 LaE~layqq~L~~eyQa 187 (401)
T PF06785_consen 171 LAEALAYQQELNDEYQA 187 (401)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 66666666666667665
No 122
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=49.44 E-value=1.5e+02 Score=24.42 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018409 209 REKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 247 (356)
Q Consensus 209 ReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nE 247 (356)
.+.++||+++......|.++|.+..+....|.....+--
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs 73 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVS 73 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999987654433
No 123
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=48.25 E-value=1.7e+02 Score=31.64 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 177 QGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQ 256 (356)
Q Consensus 177 q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~ 256 (356)
+.+||++.+++-.+.+.|-- --|++.++++.++.++...|+-+|+...--..+--..-+.-|+--+.|..+
T Consensus 29 ef~rl~k~fed~~ek~~r~~---------ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~ 99 (604)
T KOG3564|consen 29 EFIRLRKDFEDFEEKWKRTD---------AELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQ 99 (604)
T ss_pred HHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34456666666665554432 125566777888888877777777655544443333333444444445444
Q ss_pred HHH
Q 018409 257 LQQ 259 (356)
Q Consensus 257 LqQ 259 (356)
.++
T Consensus 100 i~~ 102 (604)
T KOG3564|consen 100 IQL 102 (604)
T ss_pred HHH
Confidence 444
No 124
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=46.79 E-value=11 Score=30.14 Aligned_cols=28 Identities=32% Similarity=0.767 Sum_probs=19.8
Q ss_pred ccccccccccc--cceEEeCCCCcccchhhH
Q 018409 306 GPACKGCRKRV--ASVVLLPCRHLCVCTECD 334 (356)
Q Consensus 306 ~~~C~vC~~~~--~~vlLlPCrHlclC~~C~ 334 (356)
...|.+|...- ..+++.||+|. +-..|.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~ 107 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHV-VHYSCI 107 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeE-Eecccc
Confidence 35699998754 44777899987 466664
No 125
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.65 E-value=2.5e+02 Score=26.33 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=5.6
Q ss_pred hhhHHHHHHHHH
Q 018409 164 KRQRDELDQFLQ 175 (356)
Q Consensus 164 ~qQ~~EID~~i~ 175 (356)
+.-+.+|+.+|.
T Consensus 37 ~~l~~~i~~~l~ 48 (302)
T PF10186_consen 37 EELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHH
Confidence 334445555544
No 126
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=46.16 E-value=59 Score=27.18 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 198 GAAEESIARLLRE---KEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 198 ~avE~~~~~rLRe---KEeEIera~rrn~ELEERlrql~~E 235 (356)
..+|+.+.+|+-. -|+|||++..-.+.||+++.+++..
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666432 5899999999999999999988764
No 127
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=45.83 E-value=1.6e+02 Score=23.71 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=28.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 159 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLL 208 (356)
Q Consensus 159 l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rL 208 (356)
....++.+...+-.-|....++|+..|++.++ .|+..++..-..++
T Consensus 29 ~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~----~ll~~l~~~~~~~~ 74 (127)
T smart00502 29 IIQEVEENAADVEAQIKAAFDELRNALNKRKK----QLLEDLEEQKENKL 74 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34456666667777777777888888877763 44444444333333
No 128
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=45.71 E-value=1.1e+02 Score=28.43 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018409 211 KEAEVEKATRRNAELEARAAQLSVEAQ 237 (356)
Q Consensus 211 KEeEIera~rrn~ELEERlrql~~E~Q 237 (356)
|++-|+.+.++..+|++++++|..|-+
T Consensus 144 r~~~i~~a~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 144 RQELIEEAKKKREELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666655555543
No 129
>PRK09039 hypothetical protein; Validated
Probab=45.43 E-value=3.4e+02 Score=27.42 Aligned_cols=49 Identities=24% Similarity=0.278 Sum_probs=31.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018409 215 VEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 263 (356)
Q Consensus 215 Iera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 263 (356)
|.+++.....|++++..|..+-.+=...-++.+..+..|+..|+.+++.
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666666665555566666777777777777654
No 130
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=45.26 E-value=20 Score=36.78 Aligned_cols=34 Identities=29% Similarity=0.564 Sum_probs=25.1
Q ss_pred CCcccccccccccccceEEeCCCCcccchhhHhhC-----------------CCCCCCcccc
Q 018409 303 PVSGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----------------QACPLCFNVR 347 (356)
Q Consensus 303 ~~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-----------------~~CPvCr~~i 347 (356)
.+....|..|+=++.+ |.+|.++- -.||.||+..
T Consensus 300 ~~~~~~C~~C~CRPmW-----------C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 300 LPNEPPCQQCYCRPMW-----------CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred cccCCCCccccccchH-----------HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 3456789999877764 88996651 2999999863
No 131
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=45.21 E-value=89 Score=36.51 Aligned_cols=46 Identities=26% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Q 018409 195 ALLGAAEESIARLLREKEAEVEKATR-RNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 195 ~ll~avE~~~~~rLReKEeEIera~r-rn~ELEERlrql~~E~QaWq 240 (356)
+.|..+|..-+++|+||=+|.++.-+ .+..|||||+.+..-+++-|
T Consensus 378 ~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 378 EQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44455566667777787777777644 35677777776665554443
No 132
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=45.06 E-value=1.8e+02 Score=24.24 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSVEAQV 238 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~E~Qa 238 (356)
+++.||.++......|...+..+....+.
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555444444444444444444333
No 133
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=44.90 E-value=10 Score=28.20 Aligned_cols=24 Identities=25% Similarity=0.645 Sum_probs=11.8
Q ss_pred CCCCcccchhhHhhCC-----CCCCCcccc
Q 018409 323 PCRHLCVCTECDRVVQ-----ACPLCFNVR 347 (356)
Q Consensus 323 PCrHlclC~~C~~~l~-----~CPvCr~~i 347 (356)
||++. +|..|...+. .||-||.+.
T Consensus 19 ~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 19 ECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp TTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred cCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 45666 8999966643 799999864
No 134
>PRK11637 AmiB activator; Provisional
Probab=44.83 E-value=3.6e+02 Score=27.60 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~~ 234 (356)
+|++.+.+|..+.++..+|++.|..+..
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~ 117 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQ 117 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 135
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.67 E-value=2.8e+02 Score=26.24 Aligned_cols=47 Identities=19% Similarity=0.120 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 254 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 254 (356)
..+...+++.......+|++..++|..|...=+.....-++....++
T Consensus 120 ~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 120 TAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555554444443333333333
No 136
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=44.04 E-value=48 Score=27.24 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~ 234 (356)
-.+.||++++.|..||.+|++.|..
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~ 29 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEA 29 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456999999999999999999876
No 137
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=43.85 E-value=4.8e+02 Score=28.76 Aligned_cols=85 Identities=20% Similarity=0.285 Sum_probs=53.3
Q ss_pred hhhhhhHHHH-HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 161 SPIKRQRDEL-DQFLQAQGEQL----RRALAEKRQRHYRALLGAAEES---IARLLREKEAEVEKATRRNAELEARAAQL 232 (356)
Q Consensus 161 ~~l~qQ~~EI-D~~i~~q~ErL----R~~L~E~rqrh~r~ll~avE~~---~~~rLReKEeEIera~rrn~ELEERlrql 232 (356)
-+|+.|-.|+ |.|+++.+++| ..-.+..+++-...-+.-++.. +..+|..|+.|+.+....+..+...|.+.
T Consensus 163 ~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy 242 (617)
T PF15070_consen 163 RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQY 242 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888 79999999985 3344445544444444444432 34567788888888877776666666554
Q ss_pred HHHHHHHHHHHHHhHH
Q 018409 233 SVEAQVWQAKARAQEA 248 (356)
Q Consensus 233 ~~E~QaWq~~A~~nEA 248 (356)
.+ +|+.++.++|+
T Consensus 243 ~a---~~q~l~~e~e~ 255 (617)
T PF15070_consen 243 VA---AYQQLASEKEE 255 (617)
T ss_pred HH---HHHHHHHHHHH
Confidence 33 23444444444
No 138
>PHA03415 putative internal virion protein; Provisional
Probab=43.48 E-value=82 Score=35.92 Aligned_cols=87 Identities=22% Similarity=0.321 Sum_probs=62.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 018409 156 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEK-----------RQRHYRALLGAAEESIARLLREKEAEVEKATRRN-- 222 (356)
Q Consensus 156 ~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~-----------rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn-- 222 (356)
.|+-++.+..-+.|.|-+++.-.|-|-++|.++ |.+.++..=.++|+.+.+-|-..++|--+..+-.
T Consensus 298 n~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~d 377 (1019)
T PHA03415 298 NDNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMAD 377 (1019)
T ss_pred CccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCC
Confidence 456678888899999999999999999999995 4556677778888888887755555555433322
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 018409 223 AELEARAAQLSVEAQVWQAK 242 (356)
Q Consensus 223 ~ELEERlrql~~E~QaWq~~ 242 (356)
-.+.-.+++|..|.+.|.+.
T Consensus 378 p~~dp~IarLAd~~~~~he~ 397 (1019)
T PHA03415 378 PNLDPDIARLADESDAFHGQ 397 (1019)
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 23445566666666666655
No 139
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=43.44 E-value=96 Score=36.36 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 018409 217 KATRRNAELEARAAQLSVEAQV 238 (356)
Q Consensus 217 ra~rrn~ELEERlrql~~E~Qa 238 (356)
....++.+|++.++++.++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 188 ELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777766544
No 140
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=43.18 E-value=4.6e+02 Score=28.31 Aligned_cols=37 Identities=11% Similarity=0.217 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 165 RQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAE 201 (356)
Q Consensus 165 qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE 201 (356)
.-+..+-|+|..++.+.|..=..-+--..|-|+.-|+
T Consensus 178 ~~~r~~~R~v~~enkk~rq~ak~eyNe~Vr~lv~fvk 214 (508)
T KOG0717|consen 178 ESDRFTRRLMERENKKQRQYARQEYNETVRNLVGFVK 214 (508)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666665544444444555554444
No 141
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=43.15 E-value=1.8e+02 Score=27.09 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018409 172 QFLQAQGEQLRRAL-------AEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 244 (356)
Q Consensus 172 ~~i~~q~ErLR~~L-------~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~ 244 (356)
+|+..-.+|||..+ ..+.++......+-+...|-.-.++.++||.++.++..-||+ +...+..|+.+
T Consensus 79 Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~----~~~~~k~LrnK-- 152 (171)
T PF04799_consen 79 QFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEE----IQSKSKTLRNK-- 152 (171)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--
Confidence 45555555555544 234455555555666666666677778888777666654443 33344445544
Q ss_pred HhHHHHHHHHHHHHH
Q 018409 245 AQEATAASLQAQLQQ 259 (356)
Q Consensus 245 ~nEA~a~~Lra~LqQ 259 (356)
|+-|...|+.
T Consensus 153 -----a~~L~~eL~~ 162 (171)
T PF04799_consen 153 -----ANWLESELER 162 (171)
T ss_dssp -----HHHHHHHHHH
T ss_pred -----HHHHHHHHHH
Confidence 4445555544
No 142
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.85 E-value=1e+02 Score=27.97 Aligned_cols=36 Identities=33% Similarity=0.741 Sum_probs=22.7
Q ss_pred ccccccccccceEEeCCCCcc------cchhhHhhC--------CCCCCCccc
Q 018409 308 ACKGCRKRVASVVLLPCRHLC------VCTECDRVV--------QACPLCFNV 346 (356)
Q Consensus 308 ~C~vC~~~~~~vlLlPCrHlc------lC~~C~~~l--------~~CPvCr~~ 346 (356)
.|-||..... ---|||.| .|..|...+ ..|-.|+..
T Consensus 67 tC~IC~KTKF---ADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 67 TCGICHKTKF---ADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred chhhhhhccc---ccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 6888865432 22688887 377776552 377777753
No 143
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=42.68 E-value=6.3e+02 Score=30.62 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018409 211 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEA 248 (356)
Q Consensus 211 KEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA 248 (356)
.|.-+..+..+..||+-+|..|..+...--.-|++-|-
T Consensus 1610 aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~ 1647 (1758)
T KOG0994|consen 1610 AEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEK 1647 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34444445556667776666666544433334444333
No 144
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=42.49 E-value=5.5e+02 Score=29.03 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~ 234 (356)
+-.+++...+.+.-+|++.|..+..
T Consensus 159 aHq~~l~sL~~k~~~Le~~L~~le~ 183 (739)
T PF07111_consen 159 AHQEALASLTSKAEELEKSLESLET 183 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655544
No 145
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=42.34 E-value=2.7e+02 Score=28.24 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 018409 170 LDQFLQAQGEQLRRALAEKRQRH--YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQE 247 (356)
Q Consensus 170 ID~~i~~q~ErLR~~L~E~rqrh--~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nE 247 (356)
+.+.|-.++|.|-+..+-+++.- ...|.+ -++|+-||.++|.|+++|.-+|.|... . ++-.--|
T Consensus 10 ~~~~i~k~nee~~~~~~~~~k~~e~~qkl~s-----r~~~~~ekke~i~r~n~k~~d~v~~~~---~------~~~~~~e 75 (359)
T KOG4398|consen 10 LKQTICKGNEEMEKNSEGLLKTKEKNQKLYS-----RAQRHQEKKEKIQRHNRKLGDLVEKKT---I------DLRSHYE 75 (359)
T ss_pred HHHHHhcCcHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcchHHHHHH---H------HHHHHHH
Confidence 44555566666666665554421 223332 467889999999999888777766542 1 2333344
Q ss_pred HHHHHHHHHHHHH
Q 018409 248 ATAASLQAQLQQA 260 (356)
Q Consensus 248 A~a~~Lra~LqQ~ 260 (356)
-.++--++.++++
T Consensus 76 rl~~lr~shi~el 88 (359)
T KOG4398|consen 76 RLANLRRSHILEL 88 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 146
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.76 E-value=16 Score=36.46 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=30.2
Q ss_pred CCccccccccccccc----------ceEEeCCCCcccchhhH------hhCCCCCCCccccCc
Q 018409 303 PVSGPACKGCRKRVA----------SVVLLPCRHLCVCTECD------RVVQACPLCFNVRDS 349 (356)
Q Consensus 303 ~~~~~~C~vC~~~~~----------~vlLlPCrHlclC~~C~------~~l~~CPvCr~~i~~ 349 (356)
..+...|.+|..+-- ...=|.|+|. +=..|- .+..+||.|+..++.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 345678999976532 2234789998 344442 235799999987653
No 147
>PRK11637 AmiB activator; Provisional
Probab=41.17 E-value=4.1e+02 Score=27.20 Aligned_cols=55 Identities=20% Similarity=0.245 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 262 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~ 262 (356)
|+..+.+|+.+.++..+++..|+.+..|-..-+......+..+..++..|.+.+.
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444544544445555555555554444444455555555555555555443
No 148
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=40.99 E-value=1.2e+02 Score=29.46 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~E 235 (356)
.+.++....||++.+++.+|++|+++|...
T Consensus 112 ~~~~~~~~~~e~l~~e~~~l~~rl~ql~~~ 141 (232)
T KOG2483|consen 112 RKSATQQQDIEDLSRENRKLKARLEQLSLP 141 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 344455667899999999999999888743
No 149
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.98 E-value=7.6 Score=26.50 Aligned_cols=16 Identities=25% Similarity=0.625 Sum_probs=12.4
Q ss_pred CCCCCCCccccCceEE
Q 018409 337 VQACPLCFNVRDSSVE 352 (356)
Q Consensus 337 l~~CPvCr~~i~~sV~ 352 (356)
...||+|..+...+.+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 3699999998776654
No 150
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=40.79 E-value=1.7e+02 Score=22.52 Aligned_cols=49 Identities=27% Similarity=0.240 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018409 174 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQ 231 (356)
Q Consensus 174 i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrq 231 (356)
|--...+++.+|..--+|.+..|+.-.. ...|.+.+.+.|.||...|+|
T Consensus 10 ip~~~~~~W~~L~~~l~rY~~vL~~R~~---------l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 10 IPDEKIRLWDALENFLKRYNKVLLDRAA---------LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 3344566777777777777776664443 667888999999999888876
No 151
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=40.63 E-value=89 Score=29.73 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAA 230 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlr 230 (356)
++|.+-+.|||.+..+.+.|++|+.
T Consensus 169 ~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 169 RELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566677777777777777777653
No 152
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=40.61 E-value=2.6e+02 Score=24.68 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=39.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 157 DDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEA 236 (356)
Q Consensus 157 d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~ 236 (356)
.++.+++.+-..|+++|++.+.+|-...-+. -.+ .+.+++.......+++|++..+....
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~---------ae~-----------a~~~L~~~~~~~~~i~e~~~kl~~~~ 82 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQE---------AEA-----------AEAELAELKELYAEIEEKIEKLKQDS 82 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH-----------HHHHHHHHHHHHHhHHHHHHHHHHhc
Confidence 3588899999999999998887664432221 122 33455555556666777777777765
Q ss_pred H
Q 018409 237 Q 237 (356)
Q Consensus 237 Q 237 (356)
.
T Consensus 83 ~ 83 (126)
T PF09403_consen 83 K 83 (126)
T ss_dssp G
T ss_pred c
Confidence 3
No 153
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=39.93 E-value=86 Score=24.43 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018409 199 AAEESIARLLREKEAEVEKATRRNAELE 226 (356)
Q Consensus 199 avE~~~~~rLReKEeEIera~rrn~ELE 226 (356)
-+...=+..|+..-+||++..++|.||-
T Consensus 14 FLq~eH~~tL~~LH~EIe~Lq~~~~dL~ 41 (60)
T PF14916_consen 14 FLQQEHAQTLKGLHAEIERLQKRNKDLT 41 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3333445556677789999999998875
No 154
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=39.88 E-value=2.6e+02 Score=24.42 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 018409 230 AQLSVEAQVWQAKARAQEATAA 251 (356)
Q Consensus 230 rql~~E~QaWq~~A~~nEA~a~ 251 (356)
.++.+|-++|+.+-.+.+..+.
T Consensus 97 ERl~~E~~sL~kve~eQ~~~i~ 118 (120)
T PF14931_consen 97 ERLRSEYESLQKVEQEQNELIQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888777666553
No 155
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.73 E-value=4e+02 Score=26.61 Aligned_cols=109 Identities=22% Similarity=0.252 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018409 154 FLSDDLASPIKRQRDELDQFLQAQGEQLRR----ALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 229 (356)
Q Consensus 154 ~l~d~l~~~l~qQ~~EID~~i~~q~ErLR~----~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERl 229 (356)
.+-+.+-.+++.-..|.|.|...- +++.. .-....-..-..-+..-|......|++.|.|-+.+.+...+|++..
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL-~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFL-KKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp ----------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH-HHHHHHHHHHHhHHHH------HHHHHHHHHHHHh
Q 018409 230 AQLSV-EAQVWQAKARAQEATA------ASLQAQLQQAIMS 263 (356)
Q Consensus 230 rql~~-E~QaWq~~A~~nEA~a------~~Lra~LqQ~l~~ 263 (356)
+.+.. |.+.|+......-... .+|.++++.+..+
T Consensus 88 ~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~ 128 (314)
T PF04111_consen 88 EELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQ 128 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=39.65 E-value=2.6e+02 Score=24.40 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=51.1
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 154 FLSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 154 ~l~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
.+-.-|.+.|.+-..||..+ +.+.++| +..|..-...|++..+ ..+++.....+..+|+..++.|.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l-~~el~~l----~~~r~~l~~Eiv~l~~---------~~e~~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASL-QEELARL----EAERDELREEIVKLME---------ENEELRALKKEVEELEQELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888653 4444443 3334444445554333 44444455555555555555555
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 234 VEAQVWQAKARAQEATAASLQAQLQQA 260 (356)
Q Consensus 234 ~E~QaWq~~A~~nEA~a~~Lra~LqQ~ 260 (356)
..-++--.+-.+..-.+.-|++-+..+
T Consensus 82 ~ry~t~LellGEK~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 82 QRYQTLLELLGEKSEEVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 555554444444555555566555544
No 157
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=39.56 E-value=60 Score=30.77 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=22.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAI 261 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l 261 (356)
|+.+++|..++||++|..+..++..- ........+.+|.+|+++|
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL 141 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLL 141 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHH
Confidence 45555566666666666666555432 1111222333455555554
No 158
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.52 E-value=12 Score=33.42 Aligned_cols=25 Identities=24% Similarity=0.751 Sum_probs=18.4
Q ss_pred cchhhHh-hCCCCCCCccccCceEEE
Q 018409 329 VCTECDR-VVQACPLCFNVRDSSVEV 353 (356)
Q Consensus 329 lC~~C~~-~l~~CPvCr~~i~~sV~V 353 (356)
+|..|.. .+..||+|..+|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 4666644 367999999999886554
No 159
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=39.51 E-value=3.3e+02 Score=27.38 Aligned_cols=17 Identities=24% Similarity=0.280 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018409 222 NAELEARAAQLSVEAQV 238 (356)
Q Consensus 222 n~ELEERlrql~~E~Qa 238 (356)
-.+|||+++++..|-..
T Consensus 118 ~seleeKkrkieeeR~s 134 (291)
T KOG4466|consen 118 ISELEEKKRKIEEERLS 134 (291)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 57999999999887543
No 160
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.39 E-value=5.9e+02 Score=28.70 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHH
Q 018409 164 KRQRDELDQFLQ 175 (356)
Q Consensus 164 ~qQ~~EID~~i~ 175 (356)
.....+++.+|.
T Consensus 507 ~~~~~~~~~li~ 518 (771)
T TIGR01069 507 GEFKEEINVLIE 518 (771)
T ss_pred HhhHHHHHHHHH
Confidence 344556666664
No 161
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=39.25 E-value=3.6e+02 Score=25.96 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=36.8
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 155 LSDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 155 l~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~ 234 (356)
|.|-|+++|++= ++|..++.+|...|...+.++.... ..+....-.-|++.-..|+.+.+.+..|+-.+..+..
T Consensus 9 LNdRla~YIekV-----r~LE~~N~~Le~~i~~~~~~~~~~~-~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 9 LNDRLASYIEKV-----RFLEQENKRLESEIEELREKKGEEV-SRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHHhcccccC-cccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 566677776543 3555666666666666555532211 2222222333444444555555555555555555555
Q ss_pred HHHHHH
Q 018409 235 EAQVWQ 240 (356)
Q Consensus 235 E~QaWq 240 (356)
|...++
T Consensus 83 e~~~~r 88 (312)
T PF00038_consen 83 ELEDLR 88 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 162
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.18 E-value=4.7e+02 Score=27.64 Aligned_cols=44 Identities=30% Similarity=0.363 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 193 YRALLGAAEESIA---RLLREKEAEVEKATRRNAELEARAAQLSVEA 236 (356)
Q Consensus 193 ~r~ll~avE~~~~---~rLReKEeEIera~rrn~ELEERlrql~~E~ 236 (356)
...-|..+|..+. .-|++-+.++.+..+++.+++.++..|..+-
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444332 3477778888888888888888888887765
No 163
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=39.18 E-value=8.7 Score=25.81 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.5
Q ss_pred CCCCCCCccccCceEE
Q 018409 337 VQACPLCFNVRDSSVE 352 (356)
Q Consensus 337 l~~CPvCr~~i~~sV~ 352 (356)
-..||+|..++..++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 4599999998876654
No 164
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.26 E-value=12 Score=34.19 Aligned_cols=25 Identities=24% Similarity=0.696 Sum_probs=20.4
Q ss_pred cchhhHhh-CCCCCCCccccCceEEE
Q 018409 329 VCTECDRV-VQACPLCFNVRDSSVEV 353 (356)
Q Consensus 329 lC~~C~~~-l~~CPvCr~~i~~sV~V 353 (356)
+|..|... +..||-|..+|.+.-+|
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 68888766 68999999999987554
No 165
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=37.41 E-value=6.1e+02 Score=29.75 Aligned_cols=85 Identities=25% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018409 174 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASL 253 (356)
Q Consensus 174 i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~L 253 (356)
++.+.+.++..+++.+.... -+..-......++.+.+.+++.......+|.+++..+..+...|......-+.....+
T Consensus 707 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 784 (1163)
T COG1196 707 LRRQLEELERQLEELKRELA--ALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 018409 254 QAQLQQA 260 (356)
Q Consensus 254 ra~LqQ~ 260 (356)
...+++.
T Consensus 785 ~~~~~~~ 791 (1163)
T COG1196 785 EEKRQAL 791 (1163)
T ss_pred HHHHHHH
No 166
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=37.41 E-value=1.6e+02 Score=21.49 Aligned_cols=26 Identities=38% Similarity=0.443 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~E 235 (356)
+.+.++..+...|..|...+..|..|
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455555566666666666665543
No 167
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=37.18 E-value=2.2e+02 Score=22.97 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHhHH
Q 018409 175 QAQGEQLRRALAEKRQRHYRALLGAAE--ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ----AKARAQEA 248 (356)
Q Consensus 175 ~~q~ErLR~~L~E~rqrh~r~ll~avE--~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq----~~A~~nEA 248 (356)
+..+.+++..+.+.++-|...+ .+.. ..+..+|. ..++.++++..++.++|+.|..++..-. ...+....
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l-~~~~~~~~~~~~l~---~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~ 89 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELL-TPPDADKELREKLE---RLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKA 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHH
Confidence 3444455555555555444443 3332 22333333 4556667777788888888876554211 12334445
Q ss_pred HHHHHHHHHHHHHH
Q 018409 249 TAASLQAQLQQAIM 262 (356)
Q Consensus 249 ~a~~Lra~LqQ~l~ 262 (356)
....|...+..++.
T Consensus 90 q~~~L~~~f~~~m~ 103 (117)
T smart00503 90 QTEKLRKKFKEVMN 103 (117)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666665553
No 168
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=37.07 E-value=1.2e+02 Score=32.44 Aligned_cols=30 Identities=10% Similarity=0.224 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018409 212 EAEVEKATRRNAELEARAAQLSVEAQVWQA 241 (356)
Q Consensus 212 EeEIera~rrn~ELEERlrql~~E~QaWq~ 241 (356)
..|++.+.++..++|++|+.+..|+..-+.
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~ 118 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAE 118 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 345555556677777777766666554433
No 169
>PRK14140 heat shock protein GrpE; Provisional
Probab=37.02 E-value=1.4e+02 Score=27.98 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=11.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018409 213 AEVEKATRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 213 eEIera~rrn~ELEERlrql~~E~QaWq 240 (356)
.+|+.+..+..+|++++.++.+|....+
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~r 71 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444333
No 170
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.60 E-value=1.8e+02 Score=21.80 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 222 NAELEARAAQLSVEAQVWQAKARAQEATAASLQ 254 (356)
Q Consensus 222 n~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 254 (356)
..+||+++..|..|+..+......-...+..|+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666665544444334444443
No 171
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=36.56 E-value=6.7e+02 Score=28.33 Aligned_cols=67 Identities=22% Similarity=0.302 Sum_probs=40.9
Q ss_pred hhhhhhHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH--H------HHHHHHHHHHHHHHHHH
Q 018409 161 SPIKRQRDELDQFLQAQ-------------GEQLRRALAEKRQRHYRALLGAAE--E------SIARLLREKEAEVEKAT 219 (356)
Q Consensus 161 ~~l~qQ~~EID~~i~~q-------------~ErLR~~L~E~rqrh~r~ll~avE--~------~~~~rLReKEeEIera~ 219 (356)
.++.+-+.|+|||..++ -.+||..|.|.+-|-.|-|-..-| + +-.--||+--.|.|-++
T Consensus 48 ~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQvefE~~K 127 (717)
T PF09730_consen 48 QELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQVEFEGLK 127 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45566677888876654 558899999999888887764433 2 22233555555555554
Q ss_pred HHhHHHHH
Q 018409 220 RRNAELEA 227 (356)
Q Consensus 220 rrn~ELEE 227 (356)
-.+.-|+|
T Consensus 128 hei~rl~E 135 (717)
T PF09730_consen 128 HEIKRLEE 135 (717)
T ss_pred HHHHHHHH
Confidence 44433433
No 172
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.72 E-value=3.4e+02 Score=31.26 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=5.2
Q ss_pred cccchhHH
Q 018409 110 LSFGDQQQ 117 (356)
Q Consensus 110 Ls~~~~~~ 117 (356)
.+|+|.++
T Consensus 312 ~TFEDKrk 319 (1118)
T KOG1029|consen 312 VTFEDKRK 319 (1118)
T ss_pred cchhhhhH
Confidence 56777654
No 173
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.71 E-value=4.3e+02 Score=25.80 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018409 205 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 205 ~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq 240 (356)
.+.+++.+-|+..+.++...|+.-|..|..+-..-.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666665555555555554444333
No 174
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=35.48 E-value=1.4e+02 Score=29.19 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~ 234 (356)
-++|+++.||.+.-+....||-||+.|.-
T Consensus 71 ~~IRdLNDeINkL~rEK~~WE~rI~~LGG 99 (255)
T PF06246_consen 71 FQIRDLNDEINKLIREKRHWERRIKELGG 99 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36999999999999999999999998764
No 175
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=35.44 E-value=6.8e+02 Score=28.05 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 227 ARAAQLSVEAQVWQAKARAQEATAASLQAQL 257 (356)
Q Consensus 227 ERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 257 (356)
.|.++|..|...-+.-.+..|.....|...+
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344443333333333444344444333
No 176
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=35.34 E-value=1.6e+02 Score=20.75 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 227 ARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 227 ERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
.+++.+..=|+-|+..-...|+-|.+|.+.|..
T Consensus 2 ~ql~~v~e~N~qWq~YD~qRE~YV~~L~~rl~e 34 (35)
T PF12180_consen 2 QQLRDVLEKNQQWQKYDQQREAYVRGLLARLKE 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 356667777899999999999999999988865
No 177
>PRK02224 chromosome segregation protein; Provisional
Probab=35.31 E-value=6.7e+02 Score=27.92 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAAS 252 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~ 252 (356)
.+.+.|+....+..+|++++..|..+.+.|...|..-++....
T Consensus 527 ~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~ 569 (880)
T PRK02224 527 ERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569 (880)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3455677777888899999999999999999877665554333
No 178
>PLN02189 cellulose synthase
Probab=35.27 E-value=27 Score=40.42 Aligned_cols=43 Identities=30% Similarity=0.784 Sum_probs=32.5
Q ss_pred ccccccccccc----ccceEEeCCCCcc---cchhhHhh-----CCCCCCCccccC
Q 018409 305 SGPACKGCRKR----VASVVLLPCRHLC---VCTECDRV-----VQACPLCFNVRD 348 (356)
Q Consensus 305 ~~~~C~vC~~~----~~~vlLlPCrHlc---lC~~C~~~-----l~~CPvCr~~i~ 348 (356)
+...|.+|.+. ...-+|+.|. -| +|..|... -+.||-|++...
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~-~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACN-ECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeec-cCCCccccchhhhhhhcCCccCcccCCchh
Confidence 34589999987 4555788884 44 89999754 359999998655
No 179
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=35.25 E-value=2.6e+02 Score=25.09 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=37.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Q 018409 214 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMSG 264 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~~ 264 (356)
-++.+.+--..|+..+.-+..|...++.+++.-+..+..|+..|...+...
T Consensus 41 K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 41 KADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444555555566677777788888899999999999999988764
No 180
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.02 E-value=22 Score=36.93 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=28.5
Q ss_pred Cccccccccc----ccccceEEeCCCCcccchhhHhhCC-------CCCCCccccC
Q 018409 304 VSGPACKGCR----KRVASVVLLPCRHLCVCTECDRVVQ-------ACPLCFNVRD 348 (356)
Q Consensus 304 ~~~~~C~vC~----~~~~~vlLlPCrHlclC~~C~~~l~-------~CPvCr~~i~ 348 (356)
.+...|.|=. +...-+. |+|||. +|++=...+. +||+|-....
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~-L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMM-LICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred cceeecccchhhccCCCCCee-eeccce-ecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 4566888843 3444344 489999 7887766542 8999976443
No 181
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=34.95 E-value=2.5e+02 Score=26.81 Aligned_cols=61 Identities=25% Similarity=0.322 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 169 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEE---------SIARLLREKEAEVEKATRRNAELEARAA 230 (356)
Q Consensus 169 EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~---------~~~~rLReKEeEIera~rrn~ELEERlr 230 (356)
.++.+ +.+.|+||..|..-|++.-.....--.+ .|++==|+.-.---.|-+||..||.+|+
T Consensus 132 ~~~~l-~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 132 ELGSL-RREVERLRAELQRERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred cchhH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34443 4677888888887777666555432222 3333333333334456777888887765
No 182
>KOG3068 consensus mRNA splicing factor [RNA processing and modification]
Probab=33.86 E-value=1.3e+02 Score=29.72 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 192 HYRALLGAAEESIAR---------LLREKEAEVEKATRRNAELEARAAQL 232 (356)
Q Consensus 192 h~r~ll~avE~~~~~---------rLReKEeEIera~rrn~ELEERlrql 232 (356)
|-++++.-|..++++ +||+.+.||.++.|....||-||+.|
T Consensus 46 wRrqIvreIskKva~Iqn~gLgE~rirDLNDEiNkLlrEk~~WE~rI~el 95 (268)
T KOG3068|consen 46 WRRQIVREISKKVARIQNAGLGEFRIRDLNDEINKLLREKHHWEVRIREL 95 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335555666666654 69999999999999999999999888
No 183
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=33.85 E-value=3.5e+02 Score=24.61 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATR 220 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~r 220 (356)
.||+.+=....+-|+..|.+.-+.+-.....-+|....++..+|+.-|+++.+
T Consensus 94 ~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~ 146 (154)
T PF14738_consen 94 EEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEK 146 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777777778888888888888888888888888888888888877755
No 184
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=33.84 E-value=7.5e+02 Score=29.34 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=57.6
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018409 169 ELDQFLQAQ--GEQLRRALAEKRQRHYRALLGAAE------ESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 169 EID~~i~~q--~ErLR~~L~E~rqrh~r~ll~avE------~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq 240 (356)
.=|+.++.. +-++-..|+|.+.+-+-++++..- ....++.++.+++|.++.+.+++||++-+-|..|...-+
T Consensus 370 ts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~ 449 (1195)
T KOG4643|consen 370 TSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLL 449 (1195)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336677654 446667788888877777765432 236778899999999999999999999999999987766
Q ss_pred HHHHH
Q 018409 241 AKARA 245 (356)
Q Consensus 241 ~~A~~ 245 (356)
.--.+
T Consensus 450 ~e~~t 454 (1195)
T KOG4643|consen 450 EETST 454 (1195)
T ss_pred HHHHH
Confidence 54433
No 185
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=33.65 E-value=9.1 Score=32.13 Aligned_cols=37 Identities=19% Similarity=0.680 Sum_probs=29.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhCCCCCCCcccc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVR 347 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~~CPvCr~~i 347 (356)
...|..|..+.+.... |. +|..|+..+..|+-|..+.
T Consensus 55 p~kC~~C~qktVk~AY----h~-iC~~Ca~~~~vCaKC~k~~ 91 (92)
T PF10217_consen 55 PKKCNKCQQKTVKHAY----HV-ICDPCAKELKVCAKCGKPP 91 (92)
T ss_pred CccccccccchHHHHH----HH-HHHHHHHhhccCcccCCCC
Confidence 4689999887766442 44 8999999999999998764
No 186
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=33.59 E-value=4.6e+02 Score=27.30 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHH
Q 018409 202 ESIARLLREKEAEVEKATRRNAELEARAAQLSVEA-QVWQ 240 (356)
Q Consensus 202 ~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~-QaWq 240 (356)
..+..++...+.++....+...+|++++..+.... ..|.
T Consensus 95 ~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWl 134 (390)
T PRK10920 95 KQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWL 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH
Confidence 34455677777778888888888888888776433 5555
No 187
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.46 E-value=6.7e+02 Score=28.28 Aligned_cols=13 Identities=15% Similarity=0.598 Sum_probs=8.1
Q ss_pred hhhhHHHHHHHHH
Q 018409 163 IKRQRDELDQFLQ 175 (356)
Q Consensus 163 l~qQ~~EID~~i~ 175 (356)
+.....+++.+|.
T Consensus 511 ~~~~~~~~~~li~ 523 (782)
T PRK00409 511 IGEDKEKLNELIA 523 (782)
T ss_pred HhhhhhHHHHHHH
Confidence 3455567777775
No 188
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=33.01 E-value=23 Score=42.78 Aligned_cols=46 Identities=28% Similarity=0.597 Sum_probs=31.1
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhHhh--------------CCCCCCCccccCceE
Q 018409 305 SGPACKGCRKRVAS---VVLLPCRHLCVCTECDRV--------------VQACPLCFNVRDSSV 351 (356)
Q Consensus 305 ~~~~C~vC~~~~~~---vlLlPCrHlclC~~C~~~--------------l~~CPvCr~~i~~sV 351 (356)
..-.|.||+...-+ .+-|-|+|.- =..|-.. +-.||+|..+|+-++
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 34689999986543 5667899883 3333222 238999999987543
No 189
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=32.77 E-value=5.5e+02 Score=27.50 Aligned_cols=63 Identities=30% Similarity=0.327 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH--HHHHHHHHHHH
Q 018409 172 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRR-NAELEAR--AAQLSVEAQVW 239 (356)
Q Consensus 172 ~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rr-n~ELEER--lrql~~E~QaW 239 (356)
++|+.++||||..|....+.+...+....++.+ -+|+ |.++.-|+ ..|||-| |-+.-.|...-
T Consensus 256 ~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~--~~re---en~rlQrkL~~e~erRealcr~lsEsess 321 (552)
T KOG2129|consen 256 DKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEV--DHRE---ENERLQRKLINELERREALCRMLSESESS 321 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888888888777777765555442 2333 44444333 3455544 54544454443
No 190
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=32.77 E-value=3.5e+02 Score=23.95 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 198 GAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 198 ~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
..+| ..-+|+.-.|+|++.+.++..+..++++++...+...-...+.-|.-...+...++.
T Consensus 73 ~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 73 SNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344 677888899999999999988888888888776666555544444444444444443
No 191
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=32.58 E-value=1.2e+02 Score=22.92 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQVW 239 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~QaW 239 (356)
+..+..||....++..+|.+..+.|..|-..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555555555544
No 192
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=32.53 E-value=4.2e+02 Score=30.24 Aligned_cols=60 Identities=35% Similarity=0.456 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 174 LQAQGEQLRRALAEKRQR------HYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 174 i~~q~ErLR~~L~E~rqr------h~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
+..+++++-..|+..|+| |...|..++++...--++|.-+-++++++.-.||+---++|.
T Consensus 168 l~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~ 233 (916)
T KOG0249|consen 168 LEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLE 233 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677787888777775 566677777766555555555555555555555554434433
No 193
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.30 E-value=7.2e+02 Score=28.03 Aligned_cols=11 Identities=18% Similarity=-0.013 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 018409 178 GEQLRRALAEK 188 (356)
Q Consensus 178 ~ErLR~~L~E~ 188 (356)
.++|-..|++.
T Consensus 513 ~~~li~~L~~~ 523 (771)
T TIGR01069 513 INVLIEKLSAL 523 (771)
T ss_pred HHHHHHHHHHH
Confidence 33333344333
No 194
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=32.17 E-value=31 Score=40.76 Aligned_cols=47 Identities=23% Similarity=0.490 Sum_probs=34.1
Q ss_pred ccccccccccccceEEeC-CCCcc----cchhhHhhC-------CCCCCCccccCceEEE
Q 018409 306 GPACKGCRKRVASVVLLP-CRHLC----VCTECDRVV-------QACPLCFNVRDSSVEV 353 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlP-CrHlc----lC~~C~~~l-------~~CPvCr~~i~~sV~V 353 (356)
.+.|..|....... +-| ||..- .|..|...+ ..||.|..+......+
T Consensus 667 ~rkCPkCG~~t~~~-fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~ 725 (1337)
T PRK14714 667 RRRCPSCGTETYEN-RCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR 725 (1337)
T ss_pred EEECCCCCCccccc-cCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE
Confidence 57899998865443 667 88663 599998764 2899999888776543
No 195
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=32.10 E-value=3.2e+02 Score=23.24 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=8.8
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 018409 217 KATRRNAELEARAAQLSVE 235 (356)
Q Consensus 217 ra~rrn~ELEERlrql~~E 235 (356)
.++++..++..+|+.|..+
T Consensus 52 ~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 52 EIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555443
No 196
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=31.87 E-value=6.5e+02 Score=26.72 Aligned_cols=60 Identities=27% Similarity=0.299 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 203 SIARLLREKEAEVEKATRR---------NAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 262 (356)
Q Consensus 203 ~~~~rLReKEeEIera~rr---------n~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~ 262 (356)
....|+.+|+.||.++... ..|||.|++++..=--.=|..-..-...-++|+-+|+.+..
T Consensus 359 ~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~ 427 (511)
T PF09787_consen 359 PLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLET 427 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHH
Confidence 4556788899999888554 46888888888732211122211222344666667777653
No 197
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=31.77 E-value=2.2e+02 Score=22.43 Aligned_cols=48 Identities=23% Similarity=0.404 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 181 LRRALAEKRQRH--YRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 181 LR~~L~E~rqrh--~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
+|..+...|+-| +-+-+.|++.---.-| .|.|+.||.-.|.+++.+++
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L-----~iqRmKkKKLAlKDki~~lE 58 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDAL-----RIQRMKKKKLALKDKITKLE 58 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHH-----HHHHHHHHHHhHHHHHHHHH
Confidence 455555555555 3455556655333334 47888888888888887764
No 198
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=31.43 E-value=2.5e+02 Score=21.81 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 169 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAE 201 (356)
Q Consensus 169 EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE 201 (356)
.+..-|+...+.....|+...=.+|+.||.+.+
T Consensus 26 ~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~ 58 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRKLVYENYRDFIEASD 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444556667777888888888899999998887
No 199
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=31.42 E-value=2.5e+02 Score=23.24 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=12.4
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 018409 163 IKRQRDELDQFLQAQGEQLR 182 (356)
Q Consensus 163 l~qQ~~EID~~i~~q~ErLR 182 (356)
+..--+|+|.+|....++..
T Consensus 32 v~~kLneLd~Li~eA~~r~~ 51 (109)
T PF03980_consen 32 VVEKLNELDKLIEEAKERKN 51 (109)
T ss_pred HHHHHHHHHHHHHHHHHhHh
Confidence 34444577887777666544
No 200
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=31.08 E-value=2.6e+02 Score=27.90 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=21.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 018409 219 TRRNAELEARAAQLSVEAQVWQAKARAQEA 248 (356)
Q Consensus 219 ~rrn~ELEERlrql~~E~QaWq~~A~~nEA 248 (356)
++....+||||+.|..|-+..-..|+..|-
T Consensus 258 raeL~acEEkl~kmeE~Qa~~l~~aR~~er 287 (311)
T PF04642_consen 258 RAELNACEEKLKKMEEEQAEMLRAARTEER 287 (311)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 334456778888888777777777776665
No 201
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=30.97 E-value=2.8e+02 Score=30.30 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=52.7
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--
Q 018409 160 ASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEE-----SIARLLREKEAEVEKATRRNAELEARAAQL-- 232 (356)
Q Consensus 160 ~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~-----~~~~rLReKEeEIera~rrn~ELEERlrql-- 232 (356)
...++.+..+||-++|+-.+ ||+.+.|+.+ +|-..-|+ .+.+||=-....+|++..|-....+|+|-=
T Consensus 239 ~~DlEkkegriddllRancD-lRRQIdEqqk----~LEkyKerlnkcv~msKkLLIeKs~qEk~a~RdKsmqDrlRlGhF 313 (775)
T KOG1151|consen 239 NSDLEKKEGRIDDLLRANCD-LRRQIDEQQK----MLEKYKERLNKCVTMSKKLLIEKSKQEKMACRDKSMQDRLRLGHF 313 (775)
T ss_pred cchhhhhcchHHHHHHhhhH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhhhhhcccccce
Confidence 34577888899999998644 5666666542 11111111 244555555556777777776666665421
Q ss_pred ------------HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 233 ------------SVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 233 ------------~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
-+..-+++.+.+-.|- +|+-|..++.
T Consensus 314 tTvRhGaSFteQWtDG~AFqnl~KqqE~-iN~qReeIer 351 (775)
T KOG1151|consen 314 TTVRHGASFTEQWTDGYAFQNLIKQQER-INSQREEIER 351 (775)
T ss_pred eeeecCccHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHH
Confidence 1234455555555543 5566666655
No 202
>PRK10963 hypothetical protein; Provisional
Probab=30.88 E-value=1.8e+02 Score=27.35 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=8.5
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 018409 217 KATRRNAELEARAAQLSV 234 (356)
Q Consensus 217 ra~rrn~ELEERlrql~~ 234 (356)
...++|..+-+++.++..
T Consensus 65 ~~A~~Ne~l~~~~~~l~l 82 (223)
T PRK10963 65 EQAIANEDLFYRLLPLQS 82 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555544444
No 203
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.80 E-value=7.7e+02 Score=27.28 Aligned_cols=92 Identities=25% Similarity=0.378 Sum_probs=57.0
Q ss_pred HHHHHH------HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH--------
Q 018409 168 DELDQF------LQAQGEQLRRALAEKR------QRHYRALLGAAEESIAR------LLREKEAEVEKATRR-------- 221 (356)
Q Consensus 168 ~EID~~------i~~q~ErLR~~L~E~r------qrh~r~ll~avE~~~~~------rLReKEeEIera~rr-------- 221 (356)
.|||.| |+.++..|+.++.|+- +-|+.+|-++++..-.+ -|-.|.+|+-++.+.
T Consensus 331 EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 331 EEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367766 4466777887777764 45667777766643221 145566666665433
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 222 -----NAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 222 -----n~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
+.+.-|++++|.-|..-+.+.-.--.|.+.-|-.=|-+
T Consensus 411 ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilke 453 (654)
T KOG4809|consen 411 DDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKE 453 (654)
T ss_pred HhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777889999988888877765555555444333333
No 204
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=30.65 E-value=11 Score=38.25 Aligned_cols=45 Identities=22% Similarity=0.503 Sum_probs=34.4
Q ss_pred ccccccccccccceE-EeCCCCcccchhhHhh----CCCCCCCccccCceE
Q 018409 306 GPACKGCRKRVASVV-LLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 351 (356)
Q Consensus 306 ~~~C~vC~~~~~~vl-LlPCrHlclC~~C~~~----l~~CPvCr~~i~~sV 351 (356)
-..|.+|..=-.+.. +.-|-|- +|+.|--. ...||.|...|..+.
T Consensus 15 ~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred ceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 358999987666643 4468888 89999655 479999999888764
No 205
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.15 E-value=3.9e+02 Score=26.50 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELE 226 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELE 226 (356)
.+|..-|+.-+..+...++..++ ...-|.+=|...-.|+..|..|++|..||...|.
T Consensus 161 ~~iE~~l~~ai~~~~~~~~~~~~--~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 161 NEIEKALKEAIKAVQQQLQQTQQ--QLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777766653 3333455556667788889999999999876554
No 206
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=30.08 E-value=24 Score=36.19 Aligned_cols=45 Identities=24% Similarity=0.499 Sum_probs=35.7
Q ss_pred ccccccccccccceEE-eCCCCcccchhhHhhC----CCCCCCccccCceE
Q 018409 306 GPACKGCRKRVASVVL-LPCRHLCVCTECDRVV----QACPLCFNVRDSSV 351 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlL-lPCrHlclC~~C~~~l----~~CPvCr~~i~~sV 351 (356)
+..|.+|..--.+-+. ..|+|. +|..|.... ..||+|+..+...-
T Consensus 21 ~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 21 NLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhh
Confidence 4689999988888777 599999 899997663 48999988766543
No 207
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.07 E-value=4.3e+02 Score=24.14 Aligned_cols=14 Identities=14% Similarity=0.468 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHH
Q 018409 162 PIKRQRDELDQFLQ 175 (356)
Q Consensus 162 ~l~qQ~~EID~~i~ 175 (356)
.+-+.+.|+..+-+
T Consensus 75 ~~~~l~~ELael~r 88 (194)
T PF08614_consen 75 KLAKLQEELAELYR 88 (194)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 33344444444433
No 208
>PLN02436 cellulose synthase A
Probab=29.77 E-value=36 Score=39.61 Aligned_cols=43 Identities=33% Similarity=0.784 Sum_probs=30.7
Q ss_pred cccccccccccc----cceEEeCCCCcc---cchhhHhh-----CCCCCCCccccC
Q 018409 305 SGPACKGCRKRV----ASVVLLPCRHLC---VCTECDRV-----VQACPLCFNVRD 348 (356)
Q Consensus 305 ~~~~C~vC~~~~----~~vlLlPCrHlc---lC~~C~~~-----l~~CPvCr~~i~ 348 (356)
+...|.||.+.- -.=+|+.|. -| +|..|... -+.||-|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn-~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACN-ECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeec-cCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345899999863 223677784 34 89999754 359999998655
No 209
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=29.64 E-value=3.4e+02 Score=24.84 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018409 222 NAELEARAAQLSVEAQV 238 (356)
Q Consensus 222 n~ELEERlrql~~E~Qa 238 (356)
+..||++++.|..|+..
T Consensus 160 ~~~~e~k~~~l~~En~~ 176 (194)
T PF08614_consen 160 LNMLEEKLRKLEEENRE 176 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555543
No 210
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.64 E-value=7.8e+02 Score=26.96 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 235 EAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 235 E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
+.+.++......+..+..|+..|--
T Consensus 291 qLr~~qe~lqaSqq~~~~L~~EL~~ 315 (546)
T PF07888_consen 291 QLRSAQEQLQASQQEAELLRKELSD 315 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555544433
No 211
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=29.56 E-value=1.9e+02 Score=25.67 Aligned_cols=68 Identities=19% Similarity=0.338 Sum_probs=40.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHH
Q 018409 156 SDDLASPIKRQRDELDQFLQAQ------GEQLRRALAEKRQRHYRALLGAAEESIA---RLLREKEAEVEKATRRNAELE 226 (356)
Q Consensus 156 ~d~l~~~l~qQ~~EID~~i~~q------~ErLR~~L~E~rqrh~r~ll~avE~~~~---~rLReKEeEIera~rrn~ELE 226 (356)
+..+.++|++-.+==+.|.+.+ ...|-..++|+| +++.+-|..+- .-|+.||.||...+++..++.
T Consensus 47 D~~vVsEL~~Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~q-----sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~ 121 (131)
T PF04859_consen 47 DEAVVSELRRLSELKRRYRKKQSDPSPQVARLAAEIQEQQ-----SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELN 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccccchHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678877765556666543 334555555553 45554443332 458889999988877755554
Q ss_pred HH
Q 018409 227 AR 228 (356)
Q Consensus 227 ER 228 (356)
-.
T Consensus 122 ~~ 123 (131)
T PF04859_consen 122 RA 123 (131)
T ss_pred HH
Confidence 33
No 212
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=29.22 E-value=4.8e+02 Score=24.37 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E 235 (356)
++++|.+|..+.++..+|++....+..+
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ 153 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEK 153 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666555555555554444433
No 213
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=29.09 E-value=3.3e+02 Score=23.15 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018409 205 ARLLREKEAEVEKATRR 221 (356)
Q Consensus 205 ~~rLReKEeEIera~rr 221 (356)
..||-+|..|++...+.
T Consensus 3 ~~ri~eKk~ELe~L~~l 19 (103)
T PF08654_consen 3 QARIAEKKAELEALKQL 19 (103)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777665443
No 214
>PRK14127 cell division protein GpsB; Provisional
Probab=28.79 E-value=2.4e+02 Score=24.32 Aligned_cols=10 Identities=50% Similarity=0.880 Sum_probs=7.0
Q ss_pred HHHHHHHHHH
Q 018409 168 DELDQFLQAQ 177 (356)
Q Consensus 168 ~EID~~i~~q 177 (356)
.|+|.||..=
T Consensus 26 ~EVD~FLd~V 35 (109)
T PRK14127 26 DEVDKFLDDV 35 (109)
T ss_pred HHHHHHHHHH
Confidence 5888887643
No 215
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=28.71 E-value=7.6e+02 Score=26.51 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018409 203 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 263 (356)
Q Consensus 203 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 263 (356)
.++..|++|-.-++++.++...|++|...+..|-+.-+-.-..--+....|+..++.-+..
T Consensus 436 rl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~ISk 496 (507)
T PF05600_consen 436 RLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADISK 496 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888899888888988888888877665544444444556677777776654
No 216
>PHA02562 46 endonuclease subunit; Provisional
Probab=28.62 E-value=6.9e+02 Score=26.00 Aligned_cols=45 Identities=9% Similarity=0.110 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018409 197 LGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 241 (356)
Q Consensus 197 l~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~ 241 (356)
+..++......+.+.++|++.+.+....|+..+..+..+-..+..
T Consensus 204 i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~ 248 (562)
T PHA02562 204 IEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444556667777777777777777777777776666643
No 217
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=28.49 E-value=1e+03 Score=29.07 Aligned_cols=49 Identities=24% Similarity=0.193 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018409 205 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASL 253 (356)
Q Consensus 205 ~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~L 253 (356)
..+|++.|.-++.++.+.+---+-.+++..++..-+..|..-|...+.|
T Consensus 1618 ~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~l 1666 (1758)
T KOG0994|consen 1618 TQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEIL 1666 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544444444444333333333333333333333343333333333
No 218
>PRK14143 heat shock protein GrpE; Provisional
Probab=28.41 E-value=3.3e+02 Score=26.41 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 167 RDELDQFLQAQGEQLRRALAEKRQRH 192 (356)
Q Consensus 167 ~~EID~~i~~q~ErLR~~L~E~rqrh 192 (356)
..++.. +....+.|+..+++.+.+.
T Consensus 66 ~~~~~~-l~~el~~l~~e~~elkd~~ 90 (238)
T PRK14143 66 AARLAQ-LEQELESLKQELEELNSQY 90 (238)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345654 4556677777777765443
No 219
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=28.06 E-value=3.8e+02 Score=24.26 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018409 169 ELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 229 (356)
Q Consensus 169 EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERl 229 (356)
.|+.+..+- -.|-..|-+.|-.|.|+.|.. .+-..|++|.++|+.+++...+.++.|
T Consensus 105 ki~~i~~L~-~NmhhllNeyRPhQARetLi~---~me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 105 KIEDIRLLF-INMHHLLNEYRPHQARETLIM---MMEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp HHHHHHHHH-HHHHHHHHHTHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHhCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555543333 346677888899898877633 233668888899999998888777765
No 220
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=27.97 E-value=1.2e+02 Score=33.79 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATR-------RNAELEARAA 230 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~r-------rn~ELEERlr 230 (356)
+|+-.=+..+++.+.++|++++++|.+.|-+-- -...|+++|.||..+.. .-|-||-||.
T Consensus 363 eeF~kRV~~~ia~~~AEIekmK~~Hak~m~k~k---~~s~lk~AE~~LR~a~~~p~~~G~E~WRlEGrl~ 429 (669)
T PF08549_consen 363 EEFRKRVAKKIADMNAEIEKMKARHAKRMAKFK---RNSLLKDAEKELRDAVEDPSETGPEIWRLEGRLD 429 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccHHHHHHHHHHhccCCccccCccceeeccccc
Confidence 344455667888899999999999998874332 24567788888876654 3577887776
No 221
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.84 E-value=6e+02 Score=25.09 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 223 AELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQA 260 (356)
Q Consensus 223 ~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~ 260 (356)
-++.||+++|..|+--.-..-+--+-.+..|+..++.+
T Consensus 166 ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 166 EEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 34557888888888777777777777788888888775
No 222
>PF14282 FlxA: FlxA-like protein
Probab=27.55 E-value=3.4e+02 Score=22.79 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH-HH---HHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018409 212 EAEVEKATRRNAELEARAAQLSV-EA---QVWQAKARAQEATAASLQAQLQQAIMS 263 (356)
Q Consensus 212 EeEIera~rrn~ELEERlrql~~-E~---QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 263 (356)
+..|+++.++...|.+.|+.|.. +. ..-+.....-.+-+..|.++|.++..+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888887777 22 344555566666677788887776554
No 223
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.51 E-value=8e+02 Score=26.43 Aligned_cols=8 Identities=13% Similarity=0.322 Sum_probs=3.1
Q ss_pred hhhhhHHH
Q 018409 162 PIKRQRDE 169 (356)
Q Consensus 162 ~l~qQ~~E 169 (356)
+|+.|+..
T Consensus 348 qlen~k~~ 355 (493)
T KOG0804|consen 348 QLENQKQY 355 (493)
T ss_pred HHHhHHHH
Confidence 33334333
No 224
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=27.01 E-value=2.6e+02 Score=30.96 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHH-HHHhHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQ--VWQAK-ARAQEATAASLQAQLQQA 260 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~Q--aWq~~-A~~nEA~a~~Lra~LqQ~ 260 (356)
.++.+.+|+.+.+.+.+|+.++.++..|.. .|.++ .+..+..++.|+.+|+..
T Consensus 438 ~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 438 NSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777766554 34432 334566788898888874
No 225
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=26.71 E-value=87 Score=25.39 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 203 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 203 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
..+|+|.=.|.+|+.+...+-.|.|+.-++ -..|...-...+|+++.|-..|..
T Consensus 16 ~~~R~LGlse~~Id~ie~~~~~~~Eq~yqm---L~~W~~~~g~~~At~~~L~~aLr~ 69 (80)
T cd08313 16 EFVRRLGLSDNEIERVELDHRRCRDAQYQM---LKVWKERGPRPYATLQHLLSVLRD 69 (80)
T ss_pred HHHHHcCCCHHHHHHHHHhCCChHHHHHHH---HHHHHHhcCCCcchHHHHHHHHHH
Confidence 467888899999999999888888776665 578988755557777777655554
No 226
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=26.69 E-value=6.5e+02 Score=25.11 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=65.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Q 018409 159 LASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ- 237 (356)
Q Consensus 159 l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~Q- 237 (356)
|-.+|+++. .-|+..+.++...-+++|.-..-.|=.++. .+..+|-+....-.+....|.+|-++++.+..-..
T Consensus 79 LCRELQk~N----k~lkeE~~~~~~eee~kR~el~~kFq~~L~-dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~ 153 (309)
T PF09728_consen 79 LCRELQKQN----KKLKEESKRRAREEEEKRKELSEKFQATLK-DIQAQMEEQSERNIKLREENEELREKLKSLIEQYEL 153 (309)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555554 344555555555666666555444444444 44566777777777888889999999998887654
Q ss_pred ---HHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 238 ---VWQAKARAQEATAASLQAQLQQAIM 262 (356)
Q Consensus 238 ---aWq~~A~~nEA~a~~Lra~LqQ~l~ 262 (356)
.|..+-+..+-.+.-+.+.|+++..
T Consensus 154 rE~~~~~~~k~keLE~Ql~~AKl~q~~~ 181 (309)
T PF09728_consen 154 REEHFEKLLKQKELEVQLAEAKLEQQQE 181 (309)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777544
No 227
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=26.16 E-value=22 Score=36.66 Aligned_cols=40 Identities=25% Similarity=0.667 Sum_probs=25.7
Q ss_pred ccccccccc--cceEEe--CCCCcccchhhHhhCC-----CCCCCccccC
Q 018409 308 ACKGCRKRV--ASVVLL--PCRHLCVCTECDRVVQ-----ACPLCFNVRD 348 (356)
Q Consensus 308 ~C~vC~~~~--~~vlLl--PCrHlclC~~C~~~l~-----~CPvCr~~i~ 348 (356)
.|..|.+.- .+--|. |||-. +|..|...++ .||.||...+
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhcc
Confidence 377776531 111244 55544 7999988764 9999997554
No 228
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=26.16 E-value=2.6e+02 Score=25.23 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.3
Q ss_pred HHHHHH
Q 018409 168 DELDQF 173 (356)
Q Consensus 168 ~EID~~ 173 (356)
.|+++|
T Consensus 18 ~EL~~L 23 (158)
T PRK05892 18 AELARL 23 (158)
T ss_pred HHHHHH
Confidence 344333
No 229
>PRK14139 heat shock protein GrpE; Provisional
Probab=26.11 E-value=1.3e+02 Score=28.11 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 165 RQRDELDQFLQAQGEQLRRALAEKRQRH 192 (356)
Q Consensus 165 qQ~~EID~~i~~q~ErLR~~L~E~rqrh 192 (356)
--..|++.+ ....+.+...+.|.+.+.
T Consensus 29 ~~~~e~~~l-~~~l~~le~e~~elkd~~ 55 (185)
T PRK14139 29 AAEDAAPAL-EAELAEAEAKAAELQDSF 55 (185)
T ss_pred ccchhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 334455543 344555666666554433
No 230
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=26.11 E-value=2.1e+02 Score=24.80 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018409 199 AAEESIARLLREKEAEVE 216 (356)
Q Consensus 199 avE~~~~~rLReKEeEIe 216 (356)
-+|....++|++.-.+++
T Consensus 61 e~e~K~~r~i~~ml~~~~ 78 (108)
T COG3937 61 ELEEKIPRKIEEMLSDLE 78 (108)
T ss_pred hHHHhhhHHHHHHHhhcc
Confidence 344445555555444443
No 231
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.99 E-value=4.3e+02 Score=22.78 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=4.6
Q ss_pred HHHhHHHHHHH
Q 018409 219 TRRNAELEARA 229 (356)
Q Consensus 219 ~rrn~ELEERl 229 (356)
+.++.+||.||
T Consensus 72 R~kl~~Leari 82 (103)
T COG2960 72 REKLAALEARI 82 (103)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 232
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.76 E-value=7e+02 Score=25.14 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=13.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018409 213 AEVEKATRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 213 eEIera~rrn~ELEERlrql~~E~QaWq 240 (356)
++..|+.....+-..+|+.+.-|--+|.
T Consensus 177 l~F~rlK~ele~tk~Klee~QnelsAwk 204 (330)
T KOG2991|consen 177 LFFLRLKGELEQTKDKLEEAQNELSAWK 204 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhheee
Confidence 3334444333333445555556666664
No 233
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.73 E-value=8e+02 Score=25.81 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=16.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 219 TRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 219 ~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
.....-+.++++.+..+.......-+..+..+..|+..|..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 170 (525)
T TIGR02231 130 FQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNA 170 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444444433333333333344444444443
No 234
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=25.69 E-value=2e+02 Score=25.84 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=8.1
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 018409 213 AEVEKATRRNAELEARAA 230 (356)
Q Consensus 213 eEIera~rrn~ELEERlr 230 (356)
+|-..++++-+.|+.||+
T Consensus 45 aeY~aak~~~~~le~rI~ 62 (156)
T TIGR01461 45 ADYQYGKKRLREIDRRVR 62 (156)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 235
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=25.68 E-value=8.9e+02 Score=26.33 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=8.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 018409 238 VWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 238 aWq~~A~~nEA~a~~Lra~LqQ 259 (356)
.|...-..-++-...++..+.+
T Consensus 259 ~~~~~r~~Le~ei~~le~e~~e 280 (650)
T TIGR03185 259 DLFEEREQLERQLKEIEAARKA 280 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3443333333333344433333
No 236
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=25.68 E-value=2.2e+02 Score=24.13 Aligned_cols=57 Identities=30% Similarity=0.437 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HH----HHHHHHHhHHHHHHHH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQRHY--RALLGAAEESIARLLREKE--AE----VEKATRRNAELEARAA 230 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rqrh~--r~ll~avE~~~~~rLReKE--eE----Iera~rrn~ELEERlr 230 (356)
.-||+||.++ .+|+-+|-.+. .+++.-+| ++.--|+.|- +. +++++++-.||++.+|
T Consensus 21 ~~IDsFv~Ln-----~glEskrGe~Fi~vsIlGFlE-GiLttLk~K~~deri~~Lle~Vr~~R~ele~~fR 85 (97)
T PF11505_consen 21 EAIDSFVALN-----EGLESKRGEEFIKVSILGFLE-GILTTLKLKYEDERIGELLEKVRARREELEELFR 85 (97)
T ss_dssp HHHHHHHHHT-----TTHHHHH-HHHHHHHHHHHHH-HHHHHHTTT---HHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHh-----hhhhhhchHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc
Confidence 4699999866 56777777774 35666666 5566666654 22 2333444445554443
No 237
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=25.51 E-value=3.2e+02 Score=21.06 Aligned_cols=46 Identities=22% Similarity=0.542 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRR 221 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rr 221 (356)
.-||.||.+ ||.-|.++.. .++..+-..-.+.|..+-.+||.++|+
T Consensus 7 ~~~d~yI~~----Lk~kLd~Kk~----Eil~~ln~EY~kiLk~r~~~lEevKrk 52 (56)
T PF08112_consen 7 STIDKYISI----LKSKLDEKKS----EILSNLNMEYEKILKQRRKELEEVKRK 52 (56)
T ss_pred hhHHHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888775 6777777653 555555555556666666666666554
No 238
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.42 E-value=7.1e+02 Score=25.87 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 212 EAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 212 EeEIera~rrn~ELEERlrql~~E 235 (356)
++||..-..+..+.+|+|+|-..+
T Consensus 241 ~EeL~~G~~kL~~~~etLEqq~~~ 264 (365)
T KOG2391|consen 241 EEELNIGKQKLVAMKETLEQQLQS 264 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 239
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.12 E-value=6e+02 Score=24.17 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 178 GEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 257 (356)
Q Consensus 178 ~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 257 (356)
+.+|-..+.+.|+ +++++--+ ...-+..++|++.++--..+|||.-++|.+.+..--.-.+.-.+-+..|+...
T Consensus 38 na~L~~e~~~L~~-q~~s~Qqa-----l~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 38 NAQLAEEITDLRK-QLKSLQQA-----LQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHH-HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 34444333 33445567888888888888888887777766554444444444444444444
Q ss_pred HHH
Q 018409 258 QQA 260 (356)
Q Consensus 258 qQ~ 260 (356)
..+
T Consensus 112 ~kl 114 (193)
T PF14662_consen 112 GKL 114 (193)
T ss_pred hHH
Confidence 333
No 240
>PF03528 Rabaptin: Rabaptin; InterPro: IPR018514 Regeneration of injured axons at neuromuscular junctions has been assumed to be regulated by extra-cellular factors that promote neurite outgrowth. A novel neurite outgrowth factor from chick denervated skeletal muscle has been cloned and characterised. The protein, termed neurocrescin (rabaptin), has been shown to be secreted in an activity-dependent fashion [].Rabaptin is a 100kDa coiled-coil protein that interacts with the GTP form of the small GTPase Rab5, a potent regulator of endocytic transport []. It is mainly cytosolic, but a fraction co-localises with Rab5 to early endosomes. Rab5 recruits rabaptin-5 to purified early endosomes in a GTP-dependent manner, demonstrating functional similarities with other members of the Ras superfamily. Immunodepletion of rabaptin-5 from cytosol strongly inhibits Rab5-dependent early endosome fusion. Thus, rabaptin-5 is a Rab effector required for membrane docking and fusion.; GO: 0005096 GTPase activator activity, 0008083 growth factor activity; PDB: 1X79_C.
Probab=25.10 E-value=2.8e+02 Score=23.93 Aligned_cols=31 Identities=26% Similarity=0.386 Sum_probs=26.1
Q ss_pred HHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 206 RLLREKE--AEVEKATRRNAELEARAAQLSVEA 236 (356)
Q Consensus 206 ~rLReKE--eEIera~rrn~ELEERlrql~~E~ 236 (356)
++||+-. +.+++--++..|++|.||++.+..
T Consensus 70 ~~L~~~~~~e~LE~~M~kaqe~~e~Lrs~v~p~ 102 (106)
T PF03528_consen 70 RRLREGQELENLEKSMKKAQEDEEKLRSVVMPM 102 (106)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHhHHHHHHHhcccc
Confidence 5677766 889999999999999999987754
No 241
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=25.09 E-value=4.9e+02 Score=27.11 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 191 RHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQL 232 (356)
Q Consensus 191 rh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql 232 (356)
+--..-+...|.....++++++.+|++..++..++|.++.++
T Consensus 327 ~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~~~ 368 (373)
T COG5019 327 REKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKL 368 (373)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444566777777777777777777777777777666554
No 242
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=25.06 E-value=5.5e+02 Score=23.72 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 194 RALLGAAEESIARLLREKEAEVEKATR 220 (356)
Q Consensus 194 r~ll~avE~~~~~rLReKEeEIera~r 220 (356)
+.||..+...+.+.|++.++|.+++..
T Consensus 33 ~~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 33 REILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 243
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=25.05 E-value=1.1e+03 Score=27.01 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 175 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 254 (356)
Q Consensus 175 ~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 254 (356)
+.|++.|+-.|..+. .|+-.|.+-|| +.--+|-+|+..|++....+.++++-+..+..|...-.+...-.+..++.|+
T Consensus 321 r~hi~~lkesl~~ke-~~~~~Lqsdve-~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 321 RQHIEVLKESLRAKE-QEAEMLQSDVE-ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766554 35556666666 5677899999999999999999999999999999999998888899999998
Q ss_pred HHHHHH
Q 018409 255 AQLQQA 260 (356)
Q Consensus 255 a~LqQ~ 260 (356)
..++.+
T Consensus 399 ~kie~L 404 (775)
T PF10174_consen 399 KKIENL 404 (775)
T ss_pred HHHHHH
Confidence 885443
No 244
>PHA03248 DNA packaging tegument protein UL25; Provisional
Probab=25.04 E-value=2.5e+02 Score=30.82 Aligned_cols=49 Identities=35% Similarity=0.357 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018409 181 LRRALAEKRQRHYRALLGAAE-------ESIARLLREKEAEVEKATRRNAELEARA 229 (356)
Q Consensus 181 LR~~L~E~rqrh~r~ll~avE-------~~~~~rLReKEeEIera~rrn~ELEERl 229 (356)
.|.++.+.|++-..+-|.-++ ..+-+|||-.|+.++++..-..+||+..
T Consensus 53 ~~~~~~~~r~~Aa~AAld~l~~~~~~~~~~v~~rl~p~e~~~~~v~~~l~~le~aa 108 (583)
T PHA03248 53 ARLALLEARNRAAAAALDNLAGQAATIPVEVDRRLRPIERQLEEVADALADLEEAA 108 (583)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 444455555555444443333 2456777777777777777777777554
No 245
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=24.94 E-value=41 Score=34.46 Aligned_cols=29 Identities=28% Similarity=0.793 Sum_probs=26.1
Q ss_pred ccccccccccccceEEeCCC--CcccchhhHh
Q 018409 306 GPACKGCRKRVASVVLLPCR--HLCVCTECDR 335 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCr--HlclC~~C~~ 335 (356)
...|..|-+....|+++||. |. .|.+|..
T Consensus 221 ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr 251 (446)
T KOG0006|consen 221 NITCITCTDVRSPVLVFQCNSRHV-TCLDCFR 251 (446)
T ss_pred cceeEEecCCccceEEEecCCcee-ehHHhhh
Confidence 45899999999999999999 88 8999976
No 246
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=24.92 E-value=40 Score=28.84 Aligned_cols=43 Identities=21% Similarity=0.610 Sum_probs=30.0
Q ss_pred ccccccccccceEEeCCCC------cccchhhHhhC--------CCCCCCccccCce
Q 018409 308 ACKGCRKRVASVVLLPCRH------LCVCTECDRVV--------QACPLCFNVRDSS 350 (356)
Q Consensus 308 ~C~vC~~~~~~vlLlPCrH------lclC~~C~~~l--------~~CPvCr~~i~~s 350 (356)
.|--|.+.-.+.-|.|=++ ..+|..|-..+ ..||.|+.+.+-.
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~ 93 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPG 93 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCcc
Confidence 4555666666666666654 35788886664 3899999998764
No 247
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.84 E-value=1.4e+03 Score=28.19 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=20.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 258 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~Lq 258 (356)
+++.+..+..+.++.+..+..+...+.......+..+..|+.++.
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444455444445555555554444
No 248
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=24.71 E-value=93 Score=30.78 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 018409 220 RRNAELEARAAQLSVEAQVWQAKA 243 (356)
Q Consensus 220 rrn~ELEERlrql~~E~QaWq~~A 243 (356)
++..+|+|+|++|..|-++|..+.
T Consensus 164 ~~i~~Lee~I~rLk~E~~~W~~~l 187 (301)
T PF08202_consen 164 ENIAELEEKIKRLKEERQAWAQLL 187 (301)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 456799999999999999999886
No 249
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.49 E-value=2.9e+02 Score=20.79 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQL 232 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql 232 (356)
..+.+.+.+|+....+|.+|++.++.|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567778888888888888888888
No 250
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.48 E-value=7e+02 Score=24.73 Aligned_cols=32 Identities=6% Similarity=0.114 Sum_probs=21.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018409 156 SDDLASPIKRQRDELDQFLQAQGEQLRRALAE 187 (356)
Q Consensus 156 ~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E 187 (356)
+++....|+.|=.=|=.|-|++....|..|+-
T Consensus 113 ~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~ 144 (325)
T PF08317_consen 113 DPDMRLLMDNQFQLVKTYARLEAKKMWYEWRM 144 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667776666777777776666666543
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=24.42 E-value=4.8e+02 Score=27.74 Aligned_cols=40 Identities=25% Similarity=0.651 Sum_probs=29.3
Q ss_pred ccccccccc----cccceEEeCCCCcccchhhHhh------CCCCCCCccc
Q 018409 306 GPACKGCRK----RVASVVLLPCRHLCVCTECDRV------VQACPLCFNV 346 (356)
Q Consensus 306 ~~~C~vC~~----~~~~vlLlPCrHlclC~~C~~~------l~~CPvCr~~ 346 (356)
...|-.|++ ++...=-|||-|. +=..|... -+.||-||.-
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHH
Confidence 457888876 3455556899998 67778664 3699999943
No 252
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=24.40 E-value=3.9e+02 Score=26.13 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 223 AELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 223 ~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
.|...|+..|..|+++.+..-.........|+.-+-+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666666655544444444444443333
No 253
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.00 E-value=8.3e+02 Score=25.39 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 204 IARLLREKEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 204 ~~~rLReKEeEIera~rrn~ELEERlrql~~E 235 (356)
..++++..+.||+++..+..+++++++++..+
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~ 387 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDE 387 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHH
Confidence 34556677788888888888888777776664
No 254
>PRK14127 cell division protein GpsB; Provisional
Probab=23.79 E-value=1.9e+02 Score=24.96 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=19.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLSVEAQVWQAKA 243 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~E~QaWq~~A 243 (356)
+++...+.+.+|++++++|..+...|+...
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666677777777666666666543
No 255
>PRK14157 heat shock protein GrpE; Provisional
Probab=23.71 E-value=1.8e+02 Score=28.20 Aligned_cols=35 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSVEAQVWQAKAR 244 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~ 244 (356)
..+.+|+.+.++..+|.+++.++.+|....+.++.
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~ 115 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQ 115 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 256
>PLN03184 chloroplast Hsp70; Provisional
Probab=23.69 E-value=1e+03 Score=26.26 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHH
Q 018409 179 EQLRRALAEKRQRHYRALLGAAEESIARLL--REKEAEVEKATRRNAELEARA 229 (356)
Q Consensus 179 ErLR~~L~E~rqrh~r~ll~avE~~~~~rL--ReKEeEIera~rrn~ELEERl 229 (356)
++.++...|.|. ...+++..++..... + .-.++|.+++.....++++.|
T Consensus 558 D~~~~~~~eakN-~lE~~iy~~r~~l~e-~~~~~~~eer~~l~~~l~~~e~wL 608 (673)
T PLN03184 558 DKEKRDAVDTKN-QADSVVYQTEKQLKE-LGDKVPADVKEKVEAKLKELKDAI 608 (673)
T ss_pred hHHHHHHHHHHH-hHHHHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHH
Confidence 344444444432 345555555544321 1 113445555555555555555
No 257
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.55 E-value=31 Score=38.25 Aligned_cols=37 Identities=27% Similarity=0.639 Sum_probs=25.9
Q ss_pred cccccccc----ccceEEeCCCCcccchhhHhhC--CCCCCCccc
Q 018409 308 ACKGCRKR----VASVVLLPCRHLCVCTECDRVV--QACPLCFNV 346 (356)
Q Consensus 308 ~C~vC~~~----~~~vlLlPCrHlclC~~C~~~l--~~CPvCr~~ 346 (356)
.|-+|..+ ...-+++-|+|. +|+-|...+ ..|| |.-.
T Consensus 13 ~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~scp-~~~D 55 (861)
T KOG3161|consen 13 LCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNASCP-TKRD 55 (861)
T ss_pred hchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhccCC-CCcc
Confidence 56677432 333456789999 899999886 6899 5443
No 258
>PRK14155 heat shock protein GrpE; Provisional
Probab=23.22 E-value=4.6e+02 Score=24.95 Aligned_cols=9 Identities=44% Similarity=0.663 Sum_probs=4.2
Q ss_pred HHHHHHHHh
Q 018409 214 EVEKATRRN 222 (356)
Q Consensus 214 EIera~rrn 222 (356)
|.++.+||.
T Consensus 42 efeN~RKR~ 50 (208)
T PRK14155 42 EAENTKRRA 50 (208)
T ss_pred HHHHHHHHH
Confidence 444444444
No 259
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=23.18 E-value=1.7e+02 Score=31.22 Aligned_cols=36 Identities=36% Similarity=0.415 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 224 ELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 224 ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
-||.|+.--.+||+.-+..-..-|.-=-+|-++|.+
T Consensus 276 ~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k 311 (472)
T KOG0709|consen 276 GLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK 311 (472)
T ss_pred HHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH
Confidence 355555555566666554444333333333333333
No 260
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=23.03 E-value=4e+02 Score=21.41 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.6
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Q 018409 155 LSDDLASPIKRQRDELDQFLQAQ 177 (356)
Q Consensus 155 l~d~l~~~l~qQ~~EID~~i~~q 177 (356)
.++.|+.-|..-.+|++++=..+
T Consensus 11 p~~~Ls~vl~~LqDE~~hm~~e~ 33 (79)
T PF06657_consen 11 PGEALSEVLKALQDEFGHMKMEH 33 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888889998865444
No 261
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.94 E-value=3.2e+02 Score=26.46 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~ 234 (356)
.+++.+.||.+||+++..|..
T Consensus 46 ql~r~R~~~~~Le~~l~~L~~ 66 (218)
T COG3159 46 QLARLRNRIRELEEELAALME 66 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666665543
No 262
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.90 E-value=5.5e+02 Score=22.92 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=7.4
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~ 233 (356)
+++......+++.+.++.+.
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 263
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.88 E-value=68 Score=31.87 Aligned_cols=47 Identities=11% Similarity=0.137 Sum_probs=28.6
Q ss_pred ccccccccc----cccceEEeCCCCcccchhhHhh--CCCCCCCccccCceEEE
Q 018409 306 GPACKGCRK----RVASVVLLPCRHLCVCTECDRV--VQACPLCFNVRDSSVEV 353 (356)
Q Consensus 306 ~~~C~vC~~----~~~~vlLlPCrHlclC~~C~~~--l~~CPvCr~~i~~sV~V 353 (356)
...|.|=+- .-+-++|++|||.-. ..--.. ...|++|..+....=.|
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~S-erAlKeikas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFS-ERALKEIKASVCHVCGAAYQEDDVI 163 (293)
T ss_pred eeecccccceecceEEEEEEeccceecc-HHHHHHhhhccccccCCcccccCeE
Confidence 456766543 334467899999832 221111 36999999987654433
No 264
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=22.87 E-value=33 Score=25.55 Aligned_cols=13 Identities=31% Similarity=0.690 Sum_probs=7.2
Q ss_pred CCCCCccccCceE
Q 018409 339 ACPLCFNVRDSSV 351 (356)
Q Consensus 339 ~CPvCr~~i~~sV 351 (356)
.||+|..++..+.
T Consensus 36 ~CP~C~a~K~~F~ 48 (50)
T cd00730 36 VCPVCGAGKDDFE 48 (50)
T ss_pred CCCCCCCcHHHcE
Confidence 5666665555443
No 265
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.87 E-value=6.3e+02 Score=23.63 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 232 LSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 232 l~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
+..+...|+..-..-+.....-|..|-+
T Consensus 124 ~~~~~~~~~~~l~~l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 124 LQNELEERKQRLSQLQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333443333333333333333333
No 266
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.71 E-value=1.4e+02 Score=24.43 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 215 VEKATRRNAELEARAAQLSVEAQV 238 (356)
Q Consensus 215 Iera~rrn~ELEERlrql~~E~Qa 238 (356)
|..+.+.|..|+++|..|.+|-|.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888887776654
No 267
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=22.66 E-value=3.9e+02 Score=28.30 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARA 229 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERl 229 (356)
.||||.+.-+++...+|..|-|++
T Consensus 272 qrlrelnqrL~~EL~~~raLaeqL 295 (497)
T COG3851 272 QRLRELNQRLQKELARNRALAEQL 295 (497)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334444444444444444444433
No 268
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.49 E-value=3.5e+02 Score=23.11 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=16.9
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 018409 153 SFLSDDLASPIKRQRDELDQFLQAQGE 179 (356)
Q Consensus 153 s~l~d~l~~~l~qQ~~EID~~i~~q~E 179 (356)
-++++.-.++.++.+.|.|.=+.+.+|
T Consensus 53 IlmsQNRq~~~dr~ra~~D~~inl~ae 79 (108)
T PF06210_consen 53 ILMSQNRQAARDRLRAELDYQINLKAE 79 (108)
T ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHhH
Confidence 346676666667777777766655433
No 269
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=22.17 E-value=4e+02 Score=21.10 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 175 QAQGEQLRRALAEKRQRHYRA-LLGAAEESIARLLREKEAEVEKATRRNAELEARAAQL 232 (356)
Q Consensus 175 ~~q~ErLR~~L~E~rqrh~r~-ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql 232 (356)
..+.+++...|.+-..-.... .+..+. -..||..-..++..+..+...|++|+..|
T Consensus 34 ~~~i~~~~~~L~~~~~~~~~~~~~~~~~--y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 34 LQQIDRLNEKLKELNEVEQINEPFDLDP--YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666666666533322 433333 56777777778888888888888887765
No 270
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=21.97 E-value=3.7e+02 Score=23.14 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 193 YRALLGAAEE----SIARLLREKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 193 ~r~ll~avE~----~~~~rLReKEeEIera~rrn~ELEERlrql~~ 234 (356)
.|+.+..++. +++..=|||+..+..+...-.-||.|++++..
T Consensus 49 aRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LKnlnt 94 (107)
T PRK15365 49 SRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLNA 94 (107)
T ss_pred HHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445544444 44555577777777777777777777776643
No 271
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=21.95 E-value=5.1e+02 Score=22.81 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 203 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 262 (356)
Q Consensus 203 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~ 262 (356)
.|+..||..-.||......|...-.||..+..|--+||.+..--+ .|-.+.++++.
T Consensus 37 EI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l~----~lD~~V~~aY~ 92 (131)
T PF10198_consen 37 EISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRILD----DLDKQVEQAYK 92 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 456667777788888888888888889999999999998765443 35555555554
No 272
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=21.63 E-value=23 Score=35.87 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=15.7
Q ss_pred cccccccccccc---ceEEeCCCCc
Q 018409 306 GPACKGCRKRVA---SVVLLPCRHL 327 (356)
Q Consensus 306 ~~~C~vC~~~~~---~vlLlPCrHl 327 (356)
.+.|+||.-.-+ .++.-+|.|+
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy 139 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHY 139 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHH
Confidence 567888865433 2777899999
No 273
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=21.57 E-value=2.6e+02 Score=21.67 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 242 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~ 242 (356)
.+|....+++++.++..++++...+|..|-..|...
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~ 60 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRH 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 466777888888888888888888888888777653
No 274
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=21.43 E-value=9.3e+02 Score=26.54 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=48.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018409 162 PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 162 ~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq 240 (356)
.++++-.++.+=|....++.-....|.|. ..+.+...+ ..+..||-..|.+++.....-..|++++..|..--..|.
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~-~~~~~~~~~-~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRV-KTEQAQASV-HQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 34455556665555555555555556632 233333322 345677778888888888888999999988876556675
No 275
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=21.43 E-value=6e+02 Score=22.83 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 018409 231 QLSVEAQVWQAKAR 244 (356)
Q Consensus 231 ql~~E~QaWq~~A~ 244 (356)
=..+|+..|..++.
T Consensus 67 ~~lie~slw~~L~~ 80 (146)
T PF07295_consen 67 LQLIEESLWDELSS 80 (146)
T ss_pred HHHHHHHHHHHHHh
Confidence 34557777777653
No 276
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.39 E-value=2e+02 Score=23.36 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSVEAQVW 239 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~E~QaW 239 (356)
+.+++|+.+..+...++.++.-+..+-..|
T Consensus 74 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 74 ELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444433
No 277
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.07 E-value=3.9e+02 Score=20.51 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSVEAQVW 239 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~E~QaW 239 (356)
++...|..+.+...|.++-|+++..|.+.-
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 566667777777778888888888888654
No 278
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.05 E-value=1.9e+02 Score=28.09 Aligned_cols=13 Identities=15% Similarity=0.388 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 018409 170 LDQFLQAQGEQLR 182 (356)
Q Consensus 170 ID~~i~~q~ErLR 182 (356)
|=-+|.-|=+|.|
T Consensus 80 iLpIVtsQRDRFR 92 (248)
T PF08172_consen 80 ILPIVTSQRDRFR 92 (248)
T ss_pred HHHHHHHHHHHHH
Confidence 3345566666666
No 279
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=20.89 E-value=6.7e+02 Score=23.13 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQ 231 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrq 231 (356)
.|=.--.|||.+..+...||.||++
T Consensus 119 qll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444666666666666766655
No 280
>PRK14148 heat shock protein GrpE; Provisional
Probab=20.85 E-value=2.7e+02 Score=26.25 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQRH 192 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rqrh 192 (356)
.|++. +....+.|...+++.+.+.
T Consensus 40 ~e~~~-l~~~l~~l~~e~~elkd~~ 63 (195)
T PRK14148 40 EQLER-AKDTIKELEDSCDQFKDEA 63 (195)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34444 3344555555555554333
No 281
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=20.79 E-value=18 Score=35.81 Aligned_cols=41 Identities=22% Similarity=0.578 Sum_probs=27.5
Q ss_pred ccccccccc----ccceEEeCCCCcccchhhHhhC----CCCCCCccccCc
Q 018409 307 PACKGCRKR----VASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 349 (356)
Q Consensus 307 ~~C~vC~~~----~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~ 349 (356)
.-|.+|.+. ...+-++||+|.-- ..|...+ -.||+|.. +..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHH
Confidence 348888663 44566789999953 4554443 49999988 443
No 282
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=20.76 E-value=88 Score=33.47 Aligned_cols=12 Identities=42% Similarity=0.570 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEK 217 (356)
Q Consensus 206 ~rLReKEeEIer 217 (356)
..|.+||.||++
T Consensus 403 e~i~~kE~eLe~ 414 (492)
T PF06273_consen 403 EEISQKEKELEK 414 (492)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 283
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.75 E-value=98 Score=31.18 Aligned_cols=41 Identities=22% Similarity=0.360 Sum_probs=25.0
Q ss_pred ccccccccccccceEEeCC---CC-cccchhhHhh--C--CCCCCCccc
Q 018409 306 GPACKGCRKRVASVVLLPC---RH-LCVCTECDRV--V--QACPLCFNV 346 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPC---rH-lclC~~C~~~--l--~~CPvCr~~ 346 (356)
...|.||++.+..-++..- |+ ...|..|... + ..||.|...
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 5689999888854333211 11 1368888654 2 388888864
No 284
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.70 E-value=5.8e+02 Score=22.39 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=9.7
Q ss_pred hhhhhhhhhHHHHHHHHH
Q 018409 158 DLASPIKRQRDELDQFLQ 175 (356)
Q Consensus 158 ~l~~~l~qQ~~EID~~i~ 175 (356)
+|+.-|=.--..||.||.
T Consensus 73 elA~dIi~kakqIe~LId 90 (144)
T PF11221_consen 73 ELATDIIRKAKQIEYLID 90 (144)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444556776665
No 285
>PRK14158 heat shock protein GrpE; Provisional
Probab=20.58 E-value=4.1e+02 Score=25.00 Aligned_cols=16 Identities=6% Similarity=-0.082 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 018409 175 QAQGEQLRRALAEKRQ 190 (356)
Q Consensus 175 ~~q~ErLR~~L~E~rq 190 (356)
....+.+...+.+.+.
T Consensus 46 e~~l~~le~e~~el~d 61 (194)
T PRK14158 46 EEALAAKEAEAAANWD 61 (194)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555444443
No 286
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.58 E-value=1.4e+03 Score=26.69 Aligned_cols=9 Identities=33% Similarity=0.342 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q 018409 228 RAAQLSVEA 236 (356)
Q Consensus 228 Rlrql~~E~ 236 (356)
|.|++..|-
T Consensus 407 kqRqlewEr 415 (1118)
T KOG1029|consen 407 KQRQLEWER 415 (1118)
T ss_pred HHHHHHHHH
Confidence 556665554
No 287
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.49 E-value=1.3e+03 Score=26.18 Aligned_cols=9 Identities=33% Similarity=0.457 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 018409 179 EQLRRALAE 187 (356)
Q Consensus 179 ErLR~~L~E 187 (356)
++|-..|++
T Consensus 519 ~~li~~l~~ 527 (782)
T PRK00409 519 NELIASLEE 527 (782)
T ss_pred HHHHHHHHH
Confidence 333333333
No 288
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=20.44 E-value=4.9e+02 Score=21.38 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhHHHH
Q 018409 211 KEAEVEKATRRNAELE 226 (356)
Q Consensus 211 KEeEIera~rrn~ELE 226 (356)
.+.+++.+......|+
T Consensus 100 ~~~~~~~~~~~~~~l~ 115 (120)
T PF11740_consen 100 AEAELAEAEAQAEELE 115 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 289
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.42 E-value=1.2e+03 Score=25.89 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E 235 (356)
=||+-+||+.-.|.+..|.|.|.+|..+
T Consensus 326 erE~~EeIe~~~ke~kdLkEkv~~lq~~ 353 (654)
T KOG4809|consen 326 ERERLEEIESFRKENKDLKEKVNALQAE 353 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999874
No 290
>PHA02107 hypothetical protein
Probab=20.39 E-value=2.4e+02 Score=26.51 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 203 SIARLLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 203 ~~~~rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
-.++||.|-|+||.+..-+..|.|+-++.+.
T Consensus 181 F~S~Ri~EID~EI~~LQA~RKEiEDN~K~IK 211 (216)
T PHA02107 181 FASVRISEIDEEIKELQARRKEIEDNIKSIK 211 (216)
T ss_pred hhhhhHhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999888889998887653
No 291
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=20.31 E-value=9.8e+02 Score=24.83 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 018409 205 ARLLREKEAEVEKATRRN 222 (356)
Q Consensus 205 ~~rLReKEeEIera~rrn 222 (356)
..|||..+.+..++-+|.
T Consensus 161 ~~~~R~~ek~n~~AIkKS 178 (426)
T KOG2008|consen 161 MGRMRQLEKKNKRAIKKS 178 (426)
T ss_pred HHHHHHHHHHhHHHHhhc
Confidence 457788888887777764
No 292
>PLN03188 kinesin-12 family protein; Provisional
Probab=20.23 E-value=1.4e+03 Score=27.78 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 018409 205 ARLLREKEAEVEKATRRNAELEA 227 (356)
Q Consensus 205 ~~rLReKEeEIera~rrn~ELEE 227 (356)
+=||||.|+-+.-+.+|.++.|.
T Consensus 1203 lvrl~eaeea~~~a~~r~~~~eq 1225 (1320)
T PLN03188 1203 LVRLKEAEEALTVAQKRAMDAEQ 1225 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555544444444444443
No 293
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=20.11 E-value=53 Score=30.27 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.3
Q ss_pred CCCCCCCccccCceEEE
Q 018409 337 VQACPLCFNVRDSSVEV 353 (356)
Q Consensus 337 l~~CPvCr~~i~~sV~V 353 (356)
--.||+||..|.+.+.|
T Consensus 80 ~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTVV 96 (162)
T ss_pred cccCccccCceeceEEc
Confidence 34999999999998876
No 294
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=20.07 E-value=4.5e+02 Score=20.81 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018409 203 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 243 (356)
Q Consensus 203 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A 243 (356)
...++||.+..|.+.. ..+|..++..+..+...-+.++
T Consensus 33 ~~IKKLr~~~~e~e~~---~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQ---IKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888877777643 3344455555555555444443
No 295
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.02 E-value=1.2e+03 Score=25.77 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 018409 223 AELEARAAQLSVEAQVWQAKARAQ 246 (356)
Q Consensus 223 ~ELEERlrql~~E~QaWq~~A~~n 246 (356)
.||.+++-++..+...|...-...
T Consensus 198 keL~~kl~~l~~~l~~~~e~le~K 221 (617)
T PF15070_consen 198 KELQKKLGELQEKLHNLKEKLELK 221 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555543333
No 296
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.01 E-value=5.3e+02 Score=25.07 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 018409 212 EAEVEKATRRNAELEARAA 230 (356)
Q Consensus 212 EeEIera~rrn~ELEERlr 230 (356)
..||+++.+-|..|=||+|
T Consensus 113 ~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 113 RREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777764
Done!