Query 018409
Match_columns 356
No_of_seqs 228 out of 1092
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 14:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.3 5.1E-13 1.7E-17 102.1 4.3 50 306-355 15-64 (68)
2 2vje_B MDM4 protein; proto-onc 99.3 6.7E-13 2.3E-17 99.6 2.4 51 306-356 7-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.2 2.1E-12 7.1E-17 97.2 1.6 51 306-356 8-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.2 5.6E-12 1.9E-16 98.8 4.0 51 306-356 18-68 (79)
5 4ic3_A E3 ubiquitin-protein li 99.2 7.1E-12 2.4E-16 96.4 4.1 51 306-356 24-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.1 6.8E-12 2.3E-16 96.4 1.6 51 306-356 25-75 (75)
7 3t6p_A Baculoviral IAP repeat- 98.9 5.9E-10 2E-14 109.3 3.8 51 306-356 295-345 (345)
8 4ayc_A E3 ubiquitin-protein li 98.2 1.2E-05 4.1E-10 68.0 12.0 44 307-351 54-101 (138)
9 1chc_A Equine herpes virus-1 r 98.1 1.9E-06 6.6E-11 63.6 3.3 48 306-354 5-57 (68)
10 2ysl_A Tripartite motif-contai 98.0 4.6E-06 1.6E-10 62.3 4.4 43 306-349 20-69 (73)
11 2d8t_A Dactylidin, ring finger 98.0 3.3E-06 1.1E-10 63.3 3.5 43 306-349 15-61 (71)
12 2ecn_A Ring finger protein 141 98.0 1.2E-06 4E-11 65.3 0.2 47 306-354 15-65 (70)
13 2ecm_A Ring finger and CHY zin 97.9 7E-06 2.4E-10 58.0 3.3 43 306-349 5-55 (55)
14 2y1n_A E3 ubiquitin-protein li 97.9 6.2E-06 2.1E-10 82.3 3.9 49 306-355 332-385 (389)
15 2xeu_A Ring finger protein 4; 97.9 6.4E-06 2.2E-10 59.6 3.0 49 306-355 3-64 (64)
16 2csy_A Zinc finger protein 183 97.8 1.9E-05 6.6E-10 60.5 4.8 45 306-351 15-63 (81)
17 2ct2_A Tripartite motif protei 97.8 8.9E-06 3.1E-10 62.5 2.9 43 306-349 15-68 (88)
18 2ecw_A Tripartite motif-contai 97.8 1.4E-05 4.7E-10 60.7 3.5 43 306-349 19-71 (85)
19 2ecv_A Tripartite motif-contai 97.8 1.1E-05 3.9E-10 61.1 2.8 43 306-349 19-71 (85)
20 2egp_A Tripartite motif-contai 97.7 1E-05 3.5E-10 61.1 2.2 43 306-349 12-65 (79)
21 3ng2_A RNF4, snurf, ring finge 97.7 8.9E-06 3E-10 60.3 1.5 43 306-349 10-63 (71)
22 2ea6_A Ring finger protein 4; 97.7 1.5E-05 5E-10 58.5 2.4 43 306-349 15-68 (69)
23 2kiz_A E3 ubiquitin-protein li 97.7 3.4E-05 1.1E-09 57.1 4.2 45 306-351 14-65 (69)
24 2ect_A Ring finger protein 126 97.7 3.8E-05 1.3E-09 58.1 4.3 43 306-349 15-64 (78)
25 1iym_A EL5; ring-H2 finger, ub 97.7 3.2E-05 1.1E-09 54.6 3.6 42 306-348 5-54 (55)
26 1x4j_A Ring finger protein 38; 97.6 4.1E-05 1.4E-09 57.8 3.4 44 305-349 22-72 (75)
27 2ecy_A TNF receptor-associated 97.6 4.3E-05 1.5E-09 56.3 3.5 44 305-349 14-62 (66)
28 1g25_A CDK-activating kinase a 97.6 2.5E-05 8.4E-10 57.5 2.1 43 306-349 3-55 (65)
29 1bor_A Transcription factor PM 97.6 1.9E-05 6.6E-10 57.1 1.5 43 306-349 6-49 (56)
30 2djb_A Polycomb group ring fin 97.6 4.4E-05 1.5E-09 57.3 3.5 43 306-349 15-62 (72)
31 2l0b_A E3 ubiquitin-protein li 97.5 4E-05 1.4E-09 60.5 3.1 44 305-349 39-89 (91)
32 3fl2_A E3 ubiquitin-protein li 97.5 4.8E-05 1.6E-09 62.8 3.2 43 306-349 52-99 (124)
33 2ep4_A Ring finger protein 24; 97.5 7.4E-05 2.5E-09 56.0 3.4 45 306-351 15-66 (74)
34 1jm7_A BRCA1, breast cancer ty 97.4 2.7E-05 9.3E-10 62.5 1.0 43 306-349 21-70 (112)
35 2yur_A Retinoblastoma-binding 97.4 0.00013 4.4E-09 55.2 4.7 42 306-348 15-63 (74)
36 3l11_A E3 ubiquitin-protein li 97.4 5.1E-05 1.8E-09 61.7 2.5 43 306-349 15-62 (115)
37 1e4u_A Transcriptional repress 97.4 3.8E-05 1.3E-09 59.9 1.4 44 306-350 11-63 (78)
38 3ztg_A E3 ubiquitin-protein li 97.4 6.7E-05 2.3E-09 58.5 2.7 41 306-347 13-60 (92)
39 3lrq_A E3 ubiquitin-protein li 97.4 6E-05 2E-09 60.4 2.3 43 306-349 22-70 (100)
40 2ysj_A Tripartite motif-contai 97.4 0.0001 3.5E-09 53.6 3.3 37 306-343 20-63 (63)
41 2ckl_A Polycomb group ring fin 97.4 8.8E-05 3E-09 59.8 3.0 43 306-349 15-62 (108)
42 2ecj_A Tripartite motif-contai 97.3 0.0001 3.4E-09 52.4 2.9 37 306-343 15-58 (58)
43 1z6u_A NP95-like ring finger p 97.3 0.0001 3.5E-09 63.7 3.1 44 306-350 78-126 (150)
44 2y43_A E3 ubiquitin-protein li 97.3 0.00012 4.1E-09 58.0 3.2 43 306-349 22-69 (99)
45 2ckl_B Ubiquitin ligase protei 97.3 0.00014 4.8E-09 62.8 3.5 42 306-348 54-101 (165)
46 1t1h_A Gspef-atpub14, armadill 97.2 0.00018 6.2E-09 54.3 3.3 44 305-349 7-55 (78)
47 1jm7_B BARD1, BRCA1-associated 97.2 0.00012 4.1E-09 60.0 1.9 42 306-348 22-66 (117)
48 3hct_A TNF receptor-associated 97.2 0.00018 6.1E-09 59.1 2.8 44 305-349 17-65 (118)
49 1v87_A Deltex protein 2; ring- 97.1 0.00016 5.4E-09 58.5 2.0 41 307-348 26-93 (114)
50 4ap4_A E3 ubiquitin ligase RNF 97.0 0.00044 1.5E-08 56.3 3.4 51 304-355 70-133 (133)
51 4ap4_A E3 ubiquitin ligase RNF 97.0 0.00034 1.2E-08 56.9 2.6 44 305-349 6-60 (133)
52 2f42_A STIP1 homology and U-bo 96.9 0.0027 9.2E-08 57.0 8.5 45 304-349 104-153 (179)
53 1rmd_A RAG1; V(D)J recombinati 96.9 0.00047 1.6E-08 56.1 3.1 43 306-349 23-70 (116)
54 2ecl_A Ring-box protein 2; RNF 96.6 0.0011 3.6E-08 51.3 3.1 40 308-348 28-75 (81)
55 3knv_A TNF receptor-associated 96.5 0.00046 1.6E-08 59.1 0.1 42 305-347 30-76 (141)
56 2c2l_A CHIP, carboxy terminus 96.3 0.0022 7.6E-08 58.2 3.7 44 305-349 207-255 (281)
57 3hcs_A TNF receptor-associated 96.3 0.0018 6.3E-08 55.9 2.8 44 305-349 17-65 (170)
58 1wgm_A Ubiquitin conjugation f 96.2 0.0055 1.9E-07 49.4 5.3 45 304-349 20-69 (98)
59 2kre_A Ubiquitin conjugation f 96.2 0.0064 2.2E-07 49.2 5.3 45 304-349 27-75 (100)
60 2kr4_A Ubiquitin conjugation f 96.0 0.0062 2.1E-07 47.5 4.4 45 304-349 12-60 (85)
61 3dpl_R Ring-box protein 1; ubi 95.7 0.0059 2E-07 50.1 3.3 28 319-347 68-99 (106)
62 3vk6_A E3 ubiquitin-protein li 95.4 0.0095 3.2E-07 49.3 3.4 42 309-351 4-51 (101)
63 2d8s_A Cellular modulator of i 94.7 0.027 9.3E-07 43.9 4.0 43 306-349 15-70 (80)
64 4a0k_B E3 ubiquitin-protein li 94.5 0.0067 2.3E-07 50.9 0.0 28 319-347 79-110 (117)
65 2yu4_A E3 SUMO-protein ligase 93.4 0.044 1.5E-06 43.3 2.9 40 306-346 7-59 (94)
66 1wim_A KIAA0161 protein; ring 93.1 0.022 7.6E-07 44.6 0.7 40 306-346 5-61 (94)
67 2oqq_A Transcription factor HY 92.5 0.38 1.3E-05 33.8 6.2 33 211-243 8-40 (42)
68 2v71_A Nuclear distribution pr 90.9 6.4 0.00022 35.6 14.2 52 209-260 45-100 (189)
69 3htk_C E3 SUMO-protein ligase 90.3 0.16 5.5E-06 48.3 3.3 44 304-348 179-231 (267)
70 1vyx_A ORF K3, K3RING; zinc-bi 84.7 0.49 1.7E-05 34.8 2.3 43 306-348 6-58 (60)
71 4etp_A Kinesin-like protein KA 84.5 2.8 9.4E-05 41.6 8.4 57 206-262 3-59 (403)
72 1ci6_A Transcription factor AT 83.6 2.9 9.9E-05 31.1 6.3 36 208-243 25-60 (63)
73 3oja_B Anopheles plasmodium-re 83.3 34 0.0012 34.1 15.9 58 197-254 507-564 (597)
74 3mq9_A Bone marrow stromal ant 82.8 10 0.00035 37.1 11.6 58 168-225 396-462 (471)
75 3s9g_A Protein hexim1; cyclin 80.5 16 0.00054 30.1 9.9 30 205-241 64-93 (104)
76 3oja_B Anopheles plasmodium-re 80.5 24 0.00084 35.1 13.7 70 194-263 508-580 (597)
77 2ko5_A Ring finger protein Z; 79.4 0.45 1.5E-05 39.0 0.4 46 306-353 28-77 (99)
78 2bay_A PRE-mRNA splicing facto 77.6 1.2 4.2E-05 32.6 2.3 43 306-349 3-50 (61)
79 3oja_A Leucine-rich immune mol 73.3 52 0.0018 32.1 13.5 56 207-262 422-477 (487)
80 1wlq_A Geminin; coiled-coil; 2 72.6 19 0.00066 28.6 8.1 50 180-230 20-69 (83)
81 3mq7_A Bone marrow stromal ant 71.3 46 0.0016 28.1 12.8 82 156-239 14-104 (121)
82 3na7_A HP0958; flagellar bioge 71.2 62 0.0021 29.5 13.4 51 207-257 91-141 (256)
83 1ez3_A Syntaxin-1A; three heli 71.1 23 0.00079 28.4 8.8 85 175-262 18-109 (127)
84 2q6q_A Spindle POLE BODY compo 70.7 34 0.0012 26.4 8.9 51 204-254 8-58 (74)
85 1dip_A Delta-sleep-inducing pe 70.7 2.7 9.2E-05 32.9 2.8 31 213-243 15-45 (78)
86 1jnm_A Proto-oncogene C-JUN; B 70.3 19 0.00067 26.3 7.4 28 210-237 26-53 (62)
87 2v66_B Nuclear distribution pr 70.0 46 0.0016 27.6 14.1 87 173-264 7-93 (111)
88 3iv1_A Tumor susceptibility ge 69.7 23 0.00078 27.8 7.9 30 150-179 3-36 (78)
89 1t6f_A Geminin; coiled-coil, c 69.5 5.8 0.0002 27.0 3.8 22 206-227 14-35 (37)
90 3iv1_A Tumor susceptibility ge 68.7 40 0.0014 26.4 10.4 46 195-240 3-59 (78)
91 1uii_A Geminin; human, DNA rep 68.2 43 0.0015 26.6 9.4 51 178-231 26-78 (83)
92 1x4t_A Hypothetical protein LO 68.1 19 0.00064 29.2 7.3 26 207-232 53-78 (92)
93 1kd8_A GABH AIV, GCN4 acid bas 67.8 7.5 0.00026 26.4 4.1 29 207-235 2-30 (36)
94 2jee_A YIIU; FTSZ, septum, coi 66.0 39 0.0013 26.7 8.6 22 221-242 49-70 (81)
95 2akf_A Coronin-1A; coiled coil 65.8 13 0.00044 24.3 4.7 28 211-238 4-31 (32)
96 2zxx_A Geminin; coiled-coil, c 65.8 41 0.0014 26.4 8.7 50 180-232 16-67 (79)
97 2v66_B Nuclear distribution pr 64.7 21 0.00072 29.7 7.2 42 219-260 2-47 (111)
98 2wvr_A Geminin; DNA replicatio 63.9 38 0.0013 31.0 9.3 61 179-254 96-156 (209)
99 1kd8_B GABH BLL, GCN4 acid bas 63.6 8.6 0.00029 26.1 3.8 27 207-233 2-28 (36)
100 1hjb_A Ccaat/enhancer binding 63.6 54 0.0018 26.0 9.4 29 214-242 44-72 (87)
101 1gd2_E Transcription factor PA 60.9 44 0.0015 25.5 7.9 28 211-238 41-68 (70)
102 3hnw_A Uncharacterized protein 59.2 82 0.0028 26.7 10.7 70 158-237 65-134 (138)
103 1a93_B MAX protein, coiled coi 58.1 15 0.0005 24.7 4.1 27 207-233 8-34 (34)
104 4b8c_D Glucose-repressible alc 57.2 2.9 9.9E-05 43.7 0.9 7 52-58 32-38 (727)
105 3mq7_A Bone marrow stromal ant 57.1 60 0.0021 27.4 8.7 26 205-230 84-109 (121)
106 1t2k_D Cyclic-AMP-dependent tr 57.0 52 0.0018 23.8 9.7 35 208-242 24-58 (61)
107 1s94_A S-syntaxin; three helix 56.8 61 0.0021 27.8 9.2 87 174-262 48-140 (180)
108 3ghg_A Fibrinogen alpha chain; 56.2 1.4E+02 0.0049 30.9 13.0 90 169-259 57-149 (562)
109 2dfs_A Myosin-5A; myosin-V, in 55.8 1.4E+02 0.0046 33.3 13.8 22 212-233 997-1018(1080)
110 3nmd_A CGMP dependent protein 55.6 31 0.0011 26.7 6.2 31 208-238 35-65 (72)
111 3ol1_A Vimentin; structural ge 55.4 86 0.0029 25.7 13.0 89 161-256 20-116 (119)
112 2l5g_B Putative uncharacterize 53.9 34 0.0012 23.9 5.6 31 206-236 9-39 (42)
113 2wt7_A Proto-oncogene protein 53.9 62 0.0021 23.7 10.0 36 208-243 25-60 (63)
114 3vem_A Helicase protein MOM1; 50.8 1.1E+02 0.0038 25.6 10.5 31 150-180 28-58 (115)
115 1jnm_A Proto-oncogene C-JUN; B 49.5 45 0.0015 24.3 6.1 35 221-255 23-57 (62)
116 1gu4_A CAAT/enhancer binding p 47.9 95 0.0032 24.0 8.3 28 214-241 44-71 (78)
117 1deq_A Fibrinogen (alpha chain 47.0 2.3E+02 0.0079 28.2 14.5 85 145-230 30-123 (390)
118 2b5u_A Colicin E3; high resolu 46.0 1.4E+02 0.0048 30.9 10.9 22 209-230 324-345 (551)
119 3e98_A GAF domain of unknown f 45.9 56 0.0019 30.1 7.6 20 215-234 74-93 (252)
120 1uo4_A General control protein 44.4 29 0.00099 23.2 3.8 27 207-233 2-28 (34)
121 3k1l_B Fancl; UBC, ring, RWD, 43.9 5.3 0.00018 39.7 0.3 45 306-351 308-375 (381)
122 1deq_A Fibrinogen (alpha chain 43.9 2.6E+02 0.0088 27.9 12.3 66 163-229 79-157 (390)
123 2wq1_A General control protein 42.1 32 0.0011 22.9 3.8 27 207-233 1-27 (33)
124 3m48_A General control protein 42.0 30 0.001 23.0 3.6 27 207-233 1-27 (33)
125 3u06_A Protein claret segregat 42.0 88 0.003 30.9 8.8 53 209-261 6-58 (412)
126 2dgc_A Protein (GCN4); basic d 41.9 90 0.0031 23.0 6.8 17 222-238 32-48 (63)
127 3i00_A HIP-I, huntingtin-inter 41.8 1.5E+02 0.0052 24.6 9.9 22 168-190 15-36 (120)
128 3vkg_A Dynein heavy chain, cyt 41.5 2.8E+02 0.0096 34.8 14.4 12 163-174 1950-1961(3245)
129 3c3g_A Alpha/beta peptide with 41.4 37 0.0013 22.6 3.9 27 207-233 1-27 (33)
130 2jun_A Midline-1; B-BOX, TRIM, 40.4 8.8 0.0003 29.7 1.0 30 306-336 3-35 (101)
131 3m91_A Proteasome-associated A 40.3 52 0.0018 23.7 5.0 31 205-235 8-38 (51)
132 1wle_A Seryl-tRNA synthetase; 39.8 2.2E+02 0.0077 28.9 11.5 78 170-264 69-153 (501)
133 2hy6_A General control protein 39.7 38 0.0013 22.7 3.8 27 207-233 2-28 (34)
134 3nmd_A CGMP dependent protein 39.6 64 0.0022 24.9 5.7 13 206-218 47-59 (72)
135 3ghg_A Fibrinogen alpha chain; 39.5 1.1E+02 0.0037 31.9 9.0 72 161-234 74-145 (562)
136 2oxj_A Hybrid alpha/beta pepti 38.5 43 0.0015 22.4 3.9 27 207-233 2-28 (34)
137 4egx_A Kinesin-like protein KI 38.0 1E+02 0.0034 27.1 7.7 30 200-232 6-35 (184)
138 1a92_A Delta antigen; leucine 37.7 35 0.0012 24.6 3.7 23 205-227 13-35 (50)
139 3cvf_A Homer-3, homer protein 37.3 1.4E+02 0.0047 23.4 7.4 25 216-240 16-40 (79)
140 3s9g_A Protein hexim1; cyclin 36.1 1.8E+02 0.0061 23.8 9.6 22 219-240 64-85 (104)
141 1d7m_A Cortexillin I; coiled-c 35.0 1.8E+02 0.0061 23.5 10.2 12 163-174 23-34 (101)
142 2i1j_A Moesin; FERM, coiled-co 34.2 41 0.0014 34.6 5.1 35 221-255 336-370 (575)
143 2bni_A General control protein 33.7 59 0.002 21.8 4.0 27 207-233 2-28 (34)
144 1jad_A PLC-beta, phospholipase 33.4 3.1E+02 0.01 25.7 13.7 93 160-259 31-145 (251)
145 3c3f_A Alpha/beta peptide with 33.3 58 0.002 21.8 3.9 27 207-233 2-28 (34)
146 3a7p_A Autophagy protein 16; c 32.1 2.5E+02 0.0087 24.4 11.2 26 212-237 102-127 (152)
147 1t3j_A Mitofusin 1; coiled coi 31.8 1.8E+02 0.0063 23.5 7.5 32 208-243 49-80 (96)
148 2r2v_A GCN4 leucine zipper; co 31.6 59 0.002 21.7 3.8 27 207-233 2-28 (34)
149 1z0k_B FYVE-finger-containing 31.4 86 0.0029 24.0 5.2 42 173-218 24-65 (69)
150 2p4v_A Transcription elongatio 30.5 92 0.0032 26.7 6.0 12 218-229 51-62 (158)
151 2fiy_A Protein FDHE homolog; F 30.4 24 0.00082 33.8 2.5 42 306-347 182-232 (309)
152 3cve_A Homer protein homolog 1 30.4 1.8E+02 0.0063 22.3 8.2 26 215-240 9-34 (72)
153 1hjb_A Ccaat/enhancer binding 30.2 1.5E+02 0.005 23.4 6.6 41 219-259 35-75 (87)
154 1yzm_A FYVE-finger-containing 30.1 1.1E+02 0.0039 22.0 5.4 42 174-219 7-48 (51)
155 3tnu_A Keratin, type I cytoske 29.5 2.4E+02 0.0081 23.2 9.5 17 217-233 81-97 (131)
156 1nlw_A MAD protein, MAX dimeri 29.4 1.9E+02 0.0065 22.1 7.7 53 184-236 7-70 (80)
157 1m1j_B Fibrinogen beta chain; 29.4 4.6E+02 0.016 26.5 11.8 18 215-232 141-158 (464)
158 1gd2_E Transcription factor PA 29.4 1.9E+02 0.0063 21.9 8.3 10 188-197 11-20 (70)
159 1x79_B RAB GTPase binding effe 28.4 2.5E+02 0.0087 23.2 9.3 52 209-260 16-71 (112)
160 3pwf_A Rubrerythrin; non heme 28.3 20 0.00068 31.4 1.3 17 337-353 153-169 (170)
161 3a7p_A Autophagy protein 16; c 28.0 2.7E+02 0.0093 24.2 8.5 7 165-171 35-41 (152)
162 1fmh_A General control protein 27.9 1.1E+02 0.0036 19.9 4.4 27 210-236 5-31 (33)
163 1z0j_B FYVE-finger-containing 27.4 1.3E+02 0.0043 22.5 5.4 44 172-219 12-55 (59)
164 2yy0_A C-MYC-binding protein; 27.2 1.2E+02 0.004 21.8 5.1 26 213-238 19-44 (53)
165 1ci6_A Transcription factor AT 27.0 1.8E+02 0.0063 21.2 8.2 50 203-258 12-61 (63)
166 2ct0_A Non-SMC element 1 homol 26.6 47 0.0016 25.2 3.0 42 307-349 16-64 (74)
167 3o0z_A RHO-associated protein 26.4 3.4E+02 0.012 24.0 14.4 33 158-190 6-41 (168)
168 3kin_B Kinesin heavy chain; mo 25.9 89 0.0031 25.6 4.9 25 216-240 92-116 (117)
169 1zxa_A CGMP-dependent protein 25.9 93 0.0032 23.6 4.5 18 201-218 13-30 (67)
170 1yuz_A Nigerythrin; rubrythrin 25.7 19 0.00064 32.3 0.7 15 338-352 187-201 (202)
171 1vcs_A Vesicle transport throu 25.6 2.2E+02 0.0074 22.6 7.0 51 212-262 37-95 (102)
172 3onj_A T-snare VTI1; helix, HA 25.1 2.5E+02 0.0085 22.0 8.4 52 211-262 32-94 (97)
173 1i84_S Smooth muscle myosin he 24.9 1.8E+02 0.0061 32.3 8.5 29 208-236 908-936 (1184)
174 3tnu_B Keratin, type II cytosk 24.6 2.9E+02 0.0098 22.6 10.4 22 214-235 76-97 (129)
175 4ani_A Protein GRPE; chaperone 24.4 1.4E+02 0.0047 27.3 6.2 23 168-191 59-81 (213)
176 1yk4_A Rubredoxin, RD; electro 23.6 35 0.0012 24.5 1.7 15 339-353 37-51 (52)
177 3ipq_A Oxysterols receptor LXR 23.6 29 0.001 31.9 1.6 16 164-179 44-59 (283)
178 1grj_A GREA protein; transcrip 23.5 1.2E+02 0.004 25.9 5.4 9 251-259 63-71 (158)
179 1e8j_A Rubredoxin; iron-sulfur 23.4 32 0.0011 24.7 1.5 14 339-352 38-51 (52)
180 2wvr_A Geminin; DNA replicatio 23.1 3.9E+02 0.013 24.4 8.9 52 172-232 97-148 (209)
181 2f23_A Anti-cleavage anti-GREA 22.6 94 0.0032 26.4 4.6 7 253-259 65-71 (156)
182 2v3b_B Rubredoxin 2, rubredoxi 22.6 34 0.0012 24.8 1.5 15 339-353 38-52 (55)
183 3ghg_B Fibrinogen beta chain; 22.5 2.7E+02 0.0092 28.3 8.5 101 156-259 79-188 (461)
184 2kn9_A Rubredoxin; metalloprot 22.1 41 0.0014 26.5 1.9 15 339-353 62-76 (81)
185 4rxn_A Rubredoxin; electron tr 22.0 32 0.0011 25.0 1.3 14 339-352 38-51 (54)
186 2dfs_A Myosin-5A; myosin-V, in 22.0 8.4E+02 0.029 27.0 16.1 18 223-240 1019-1036(1080)
187 1gk4_A Vimentin; intermediate 21.9 2.7E+02 0.0092 21.3 8.3 25 212-236 25-49 (84)
188 3ni0_A Bone marrow stromal ant 21.9 3.2E+02 0.011 22.2 12.9 58 206-263 32-89 (99)
189 1gu4_A CAAT/enhancer binding p 21.5 1.4E+02 0.0048 23.1 4.9 36 219-254 35-70 (78)
190 1lko_A Rubrerythrin all-iron(I 21.0 24 0.00082 31.1 0.4 15 338-352 172-186 (191)
191 3v1a_A Computational design, M 20.7 1.5E+02 0.0052 21.1 4.5 39 175-217 7-45 (48)
192 2dgc_A Protein (GCN4); basic d 20.7 2.5E+02 0.0087 20.5 6.4 30 206-235 30-59 (63)
193 3thf_A Protein shroom; coiled- 20.1 2.8E+02 0.0095 25.0 7.2 39 211-249 17-55 (190)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.1e-13 Score=102.07 Aligned_cols=50 Identities=34% Similarity=0.806 Sum_probs=47.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhCCCCCCCccccCceEEEee
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFL 355 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~~CPvCr~~i~~sV~V~l 355 (356)
...|+||+++.++++|+||+|+++|..|...+..||+||.+|...++||.
T Consensus 15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp SSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence 56899999999999999999999999999999999999999999999985
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.29 E-value=6.7e-13 Score=99.63 Aligned_cols=51 Identities=27% Similarity=0.648 Sum_probs=47.1
Q ss_pred ccccccccccccceEEe--CCCCcccchhhHhhCC----CCCCCccccCceEEEeeC
Q 018409 306 GPACKGCRKRVASVVLL--PCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFLS 356 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLl--PCrHlclC~~C~~~l~----~CPvCr~~i~~sV~V~lS 356 (356)
...|+||+++..+.+++ ||||+++|..|+..+. .||+||.+|...++||+|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 56899999999987777 9999999999999876 999999999999999986
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.22 E-value=2.1e-12 Score=97.21 Aligned_cols=51 Identities=22% Similarity=0.529 Sum_probs=47.0
Q ss_pred ccccccccccccceEEe--CCCCcccchhhHhhCC----CCCCCccccCceEEEeeC
Q 018409 306 GPACKGCRKRVASVVLL--PCRHLCVCTECDRVVQ----ACPLCFNVRDSSVEVFLS 356 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLl--PCrHlclC~~C~~~l~----~CPvCr~~i~~sV~V~lS 356 (356)
...|.||+++..+++|+ ||||+++|..|...+. .||+||.+|...++||+|
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 45899999999999988 9999999999988864 599999999999999986
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.21 E-value=5.6e-12 Score=98.75 Aligned_cols=51 Identities=25% Similarity=0.659 Sum_probs=48.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhCCCCCCCccccCceEEEeeC
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~~CPvCr~~i~~sV~V~lS 356 (356)
...|.||++...+++|+||||.++|..|...+..||+||.+|...++||++
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 468999999999999999999999999999999999999999999999974
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.21 E-value=7.1e-12 Score=96.40 Aligned_cols=51 Identities=33% Similarity=0.882 Sum_probs=48.2
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhCCCCCCCccccCceEEEeeC
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~~CPvCr~~i~~sV~V~lS 356 (356)
...|.||++...+.+++||||.++|..|...+..||+||.++...++||+|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 468999999999999999999999999999999999999999999999997
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=6.8e-12 Score=96.44 Aligned_cols=51 Identities=35% Similarity=0.915 Sum_probs=48.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhCCCCCCCccccCceEEEeeC
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~~CPvCr~~i~~sV~V~lS 356 (356)
...|.||++...+++++||+|.++|..|...+..||+||.++...++||+|
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 468999999999999999999999999999999999999999999999987
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.89 E-value=5.9e-10 Score=109.27 Aligned_cols=51 Identities=41% Similarity=0.946 Sum_probs=47.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhCCCCCCCccccCceEEEeeC
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQACPLCFNVRDSSVEVFLS 356 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~~CPvCr~~i~~sV~V~lS 356 (356)
...|.||++...+.+++||||.|+|..|...+..||+||.+|...++||+|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 468999999999999999999999999999999999999999999999987
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.24 E-value=1.2e-05 Score=68.03 Aligned_cols=44 Identities=27% Similarity=0.562 Sum_probs=37.4
Q ss_pred cccccccccccceEEeCCCCcccchhhHhh----CCCCCCCccccCceE
Q 018409 307 PACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 351 (356)
Q Consensus 307 ~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~sV 351 (356)
..|.||++...+.+++||||. +|..|... -..||+||.++....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 479999999999999999996 89999765 358999999987643
No 9
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.07 E-value=1.9e-06 Score=63.62 Aligned_cols=48 Identities=29% Similarity=0.603 Sum_probs=40.4
Q ss_pred ccccccccccccc-eEEeCCCCcccchhhHhh----CCCCCCCccccCceEEEe
Q 018409 306 GPACKGCRKRVAS-VVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSVEVF 354 (356)
Q Consensus 306 ~~~C~vC~~~~~~-vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~sV~V~ 354 (356)
...|.+|++.... ++++||+|. +|..|... -..||+||.++...++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 4589999999877 688999999 99999754 468999999998776554
No 10
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=4.6e-06 Score=62.29 Aligned_cols=43 Identities=26% Similarity=0.588 Sum_probs=37.0
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhCC-------CCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVVQ-------ACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l~-------~CPvCr~~i~~ 349 (356)
...|.||++.....+++||+|. +|..|..... .||+||.++..
T Consensus 20 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 20 EVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 5689999999999888899999 8999976632 79999998764
No 11
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=3.3e-06 Score=63.34 Aligned_cols=43 Identities=30% Similarity=0.701 Sum_probs=37.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC----CCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~ 349 (356)
...|.||++.....+++||+|. +|..|.... ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 15 VPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp CCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4689999999999999999999 999998763 589999998764
No 12
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=1.2e-06 Score=65.29 Aligned_cols=47 Identities=28% Similarity=0.598 Sum_probs=39.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC----CCCCCCccccCceEEEe
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSVEVF 354 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~sV~V~ 354 (356)
...|.||++.... +++||+|. +|..|.... ..||+||.++.....+|
T Consensus 15 ~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 15 EEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 4689999999888 88899999 999998763 58999999988765544
No 13
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.89 E-value=7e-06 Score=58.02 Aligned_cols=43 Identities=28% Similarity=0.709 Sum_probs=35.0
Q ss_pred ccccccccccccc----eEEeCCCCcccchhhHhhC----CCCCCCccccCc
Q 018409 306 GPACKGCRKRVAS----VVLLPCRHLCVCTECDRVV----QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~----vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~ 349 (356)
...|.||++.-.. ++++||+|. +|..|.... ..||+||.++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999987544 889999997 899997653 699999998753
No 14
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.88 E-value=6.2e-06 Score=82.26 Aligned_cols=49 Identities=31% Similarity=0.618 Sum_probs=42.2
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhh-----CCCCCCCccccCceEEEee
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSVEVFL 355 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~sV~V~l 355 (356)
...|.||++...+.+++||||.. |..|... ...||+||.++.....|++
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 36899999999999999999995 9999753 4799999999998776653
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.88 E-value=6.4e-06 Score=59.58 Aligned_cols=49 Identities=22% Similarity=0.609 Sum_probs=38.0
Q ss_pred ccccccccccccc-------eEEeCCCCcccchhhHhh----CCCCCCCccccC--ceEEEee
Q 018409 306 GPACKGCRKRVAS-------VVLLPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 355 (356)
Q Consensus 306 ~~~C~vC~~~~~~-------vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~--~sV~V~l 355 (356)
...|.||++.-.. ++++||+|. +|..|... -..||+||.++. ..+.+|+
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 4579999987554 378899999 89999765 359999999887 4555553
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=1.9e-05 Score=60.48 Aligned_cols=45 Identities=24% Similarity=0.541 Sum_probs=37.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhh----CCCCCCCccccCceE
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 351 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~sV 351 (356)
...|.||++...+.+++||+|. +|..|... ...||+|+.++...+
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 15 PFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 4689999999999889999998 79999755 358999999987443
No 17
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=8.9e-06 Score=62.53 Aligned_cols=43 Identities=26% Similarity=0.655 Sum_probs=35.9
Q ss_pred ccccccccccccc----eEEeCCCCcccchhhHhhC-------CCCCCCccccCc
Q 018409 306 GPACKGCRKRVAS----VVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~----vlLlPCrHlclC~~C~~~l-------~~CPvCr~~i~~ 349 (356)
...|.||++.-.. .+++||+|. +|..|.... ..||+||.++..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4689999998877 888899998 899997653 589999997643
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.78 E-value=1.4e-05 Score=60.68 Aligned_cols=43 Identities=23% Similarity=0.506 Sum_probs=36.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhh----------CCCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----------l~~CPvCr~~i~~ 349 (356)
...|.||++.....+++||+|. +|..|... ...||+|+..+..
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 5689999999888888999998 89999765 4589999998764
No 19
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=1.1e-05 Score=61.14 Aligned_cols=43 Identities=23% Similarity=0.576 Sum_probs=36.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhh----------CCCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRV----------VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----------l~~CPvCr~~i~~ 349 (356)
...|.||++.....+++||+|. +|..|... ...||+|+..+..
T Consensus 19 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 5689999999888888899998 89999755 4689999998763
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.73 E-value=1e-05 Score=61.08 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=36.2
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhh-----------CCCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----------VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----------l~~CPvCr~~i~~ 349 (356)
...|.||++...+.+.+||+|. +|..|... ...||+||.++..
T Consensus 12 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4689999998888777899998 89999764 3489999998753
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.71 E-value=8.9e-06 Score=60.25 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=34.8
Q ss_pred ccccccccccccce-------EEeCCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 306 GPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~v-------lLlPCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
...|.||++.-... +++||+|. +|..|... -..||+||.++..
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 45899999875553 88899998 89999754 3699999998764
No 22
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=1.5e-05 Score=58.47 Aligned_cols=43 Identities=26% Similarity=0.661 Sum_probs=34.8
Q ss_pred ccccccccccccce-------EEeCCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 306 GPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~v-------lLlPCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
...|.||++..... +++||+|. +|..|... -..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 46899999976553 88899996 89999765 3589999998753
No 23
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.68 E-value=3.4e-05 Score=57.13 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=35.6
Q ss_pred cccccccccc---ccceEEeCCCCcccchhhHhh----CCCCCCCccccCceE
Q 018409 306 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 351 (356)
Q Consensus 306 ~~~C~vC~~~---~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~sV 351 (356)
...|.||++. ...++++||+|. +|..|... -..||+||..+...+
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 4579999654 356788999999 89999765 368999999887643
No 24
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.65 E-value=3.8e-05 Score=58.13 Aligned_cols=43 Identities=33% Similarity=0.692 Sum_probs=34.0
Q ss_pred cccccccccc---ccceEEeCCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 306 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~---~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
...|.||++. ...+.++||+|. +|..|... -..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCC
Confidence 4689999654 455677899997 89999764 3689999998765
No 25
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.65 E-value=3.2e-05 Score=54.64 Aligned_cols=42 Identities=31% Similarity=0.661 Sum_probs=34.0
Q ss_pred ccccccccccccc---eEEeC-CCCcccchhhHhh----CCCCCCCccccC
Q 018409 306 GPACKGCRKRVAS---VVLLP-CRHLCVCTECDRV----VQACPLCFNVRD 348 (356)
Q Consensus 306 ~~~C~vC~~~~~~---vlLlP-CrHlclC~~C~~~----l~~CPvCr~~i~ 348 (356)
...|.||++.-.. ++.+| |+|. +|..|... -..||+||..+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4579999887655 77787 9998 89999765 358999998764
No 26
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.57 E-value=4.1e-05 Score=57.77 Aligned_cols=44 Identities=23% Similarity=0.528 Sum_probs=34.8
Q ss_pred ccccccccccc---ccceEEeCCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 305 SGPACKGCRKR---VASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~---~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
....|.||++. ...++.+||+|. +|..|... -..||+||..+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 35689999965 334678899998 99999765 3689999998765
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=4.3e-05 Score=56.31 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=36.6
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhh-----CCCCCCCccccCc
Q 018409 305 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~ 349 (356)
....|.||++...+.+.+||+|. +|..|... ...||+|+.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35689999998888777899999 89999764 2489999998764
No 28
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.57 E-value=2.5e-05 Score=57.46 Aligned_cols=43 Identities=21% Similarity=0.625 Sum_probs=32.8
Q ss_pred ccccccccc----cccc-eEEeCCCCcccchhhHhhC-----CCCCCCccccCc
Q 018409 306 GPACKGCRK----RVAS-VVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~----~~~~-vlLlPCrHlclC~~C~~~l-----~~CPvCr~~i~~ 349 (356)
...|.||++ ++.. ++++||||. +|..|.... ..||+|+.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 357999999 2322 256899998 899997664 479999998764
No 29
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.57 E-value=1.9e-05 Score=57.11 Aligned_cols=43 Identities=28% Similarity=0.674 Sum_probs=36.2
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC-CCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-~~CPvCr~~i~~ 349 (356)
...|.||++.-.+.+++||+|. +|..|.... ..||+||..+..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 4579999998888888999998 899997553 589999998763
No 30
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=4.4e-05 Score=57.31 Aligned_cols=43 Identities=23% Similarity=0.516 Sum_probs=35.9
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLl-PCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
...|.||++...+.+.+ ||+|. +|..|... ...||+||.++..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCc
Confidence 56899999998877665 99998 79999754 4699999998765
No 31
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.54 E-value=4e-05 Score=60.48 Aligned_cols=44 Identities=23% Similarity=0.560 Sum_probs=35.3
Q ss_pred cccccccccccccc---eEEeCCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 305 SGPACKGCRKRVAS---VVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~~~~---vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
....|.||++.-.. ++.+||+|. +|..|... -..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45689999876554 778999997 99999765 3589999998764
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.50 E-value=4.8e-05 Score=62.84 Aligned_cols=43 Identities=28% Similarity=0.563 Sum_probs=36.5
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhh-----CCCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~ 349 (356)
...|.||++.-.+.+.+||||. +|..|... ...||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4589999999888888999998 89999754 2489999998865
No 33
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=7.4e-05 Score=55.99 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=35.2
Q ss_pred ccccccccccc---cceEEeCCCCcccchhhHhh----CCCCCCCccccCceE
Q 018409 306 GPACKGCRKRV---ASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDSSV 351 (356)
Q Consensus 306 ~~~C~vC~~~~---~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~sV 351 (356)
...|.||++.- ..+.++||+|. +|..|... -..||+||.++....
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLA 66 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCccccccc
Confidence 45799998863 44667799999 99999765 358999999887643
No 34
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.45 E-value=2.7e-05 Score=62.50 Aligned_cols=43 Identities=28% Similarity=0.562 Sum_probs=35.6
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC-------CCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-------~~CPvCr~~i~~ 349 (356)
...|.||++.....+.+||+|. +|..|.... ..||+|+.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4589999998888777899998 899997652 279999998764
No 35
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.44 E-value=0.00013 Score=55.18 Aligned_cols=42 Identities=29% Similarity=0.744 Sum_probs=35.6
Q ss_pred ccccccccccccceEEeC-CCCcccchhhHhhC------CCCCCCccccC
Q 018409 306 GPACKGCRKRVASVVLLP-CRHLCVCTECDRVV------QACPLCFNVRD 348 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlP-CrHlclC~~C~~~l------~~CPvCr~~i~ 348 (356)
...|.||++.-.+.+.+| |+|. +|..|.... ..||+||.++.
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 15 ELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 568999999999988899 9998 899996552 48999999743
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.43 E-value=5.1e-05 Score=61.74 Aligned_cols=43 Identities=30% Similarity=0.687 Sum_probs=36.4
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC-----CCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-----~~CPvCr~~i~~ 349 (356)
...|.||++.-...+.+||+|. +|..|.... ..||+||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4689999999888888899999 899997653 389999998753
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.41 E-value=3.8e-05 Score=59.87 Aligned_cols=44 Identities=20% Similarity=0.562 Sum_probs=34.7
Q ss_pred ccccccccccc--cceEEeC--CCCcccchhhHhhC-----CCCCCCccccCce
Q 018409 306 GPACKGCRKRV--ASVVLLP--CRHLCVCTECDRVV-----QACPLCFNVRDSS 350 (356)
Q Consensus 306 ~~~C~vC~~~~--~~vlLlP--CrHlclC~~C~~~l-----~~CPvCr~~i~~s 350 (356)
...|.||++.- .++.++| |||. +|..|...+ ..||+||.++...
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred CCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 45899999965 3456666 9998 999998765 3899999988754
No 38
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.40 E-value=6.7e-05 Score=58.50 Aligned_cols=41 Identities=29% Similarity=0.785 Sum_probs=35.3
Q ss_pred ccccccccccccceEEeC-CCCcccchhhHhhC------CCCCCCcccc
Q 018409 306 GPACKGCRKRVASVVLLP-CRHLCVCTECDRVV------QACPLCFNVR 347 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlP-CrHlclC~~C~~~l------~~CPvCr~~i 347 (356)
...|.||++.-.+-+.+| |||. +|..|.... ..||+|+.++
T Consensus 13 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 568999999988888899 9999 899996542 4899999986
No 39
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.38 E-value=6e-05 Score=60.43 Aligned_cols=43 Identities=26% Similarity=0.497 Sum_probs=36.4
Q ss_pred ccccccccccccceEE-eCCCCcccchhhHhh----C-CCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVL-LPCRHLCVCTECDRV----V-QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlL-lPCrHlclC~~C~~~----l-~~CPvCr~~i~~ 349 (356)
...|.||++.....+. +||+|. +|..|... . ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4689999999998888 999999 89999764 2 589999998753
No 40
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.0001 Score=53.62 Aligned_cols=37 Identities=30% Similarity=0.723 Sum_probs=31.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC-------CCCCCC
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLC 343 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-------~~CPvC 343 (356)
...|.||++...+.+++||+|. +|..|.... ..||+|
T Consensus 20 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 5689999999999888899999 899996542 379998
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.36 E-value=8.8e-05 Score=59.81 Aligned_cols=43 Identities=21% Similarity=0.465 Sum_probs=36.5
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhhC----CCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLL-PCRHLCVCTECDRVV----QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLl-PCrHlclC~~C~~~l----~~CPvCr~~i~~ 349 (356)
...|.||++.-.+.+.+ ||||. +|..|.... ..||+|+..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 46899999998887776 99998 899997653 589999998875
No 42
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.0001 Score=52.38 Aligned_cols=37 Identities=27% Similarity=0.758 Sum_probs=31.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC-------CCCCCC
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-------QACPLC 343 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-------~~CPvC 343 (356)
...|.||++...+.+++||+|. +|..|.... ..||+|
T Consensus 15 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 4689999999888888999999 899996653 589998
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.31 E-value=0.0001 Score=63.72 Aligned_cols=44 Identities=27% Similarity=0.551 Sum_probs=36.9
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC-----CCCCCCccccCce
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDSS 350 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-----~~CPvCr~~i~~s 350 (356)
...|.||++...+.+.+||+|. +|..|.... ..||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3589999999999888999997 899997552 3799999988753
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.30 E-value=0.00012 Score=58.03 Aligned_cols=43 Identities=23% Similarity=0.529 Sum_probs=35.8
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLl-PCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
...|.||++.-.+-+.+ ||||. +|..|... -..||+|+..+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 46899999998887776 99998 89999755 2589999998764
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.27 E-value=0.00014 Score=62.81 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=35.0
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhh-----CCCCCCCccccC
Q 018409 306 GPACKGCRKRVASVVLL-PCRHLCVCTECDRV-----VQACPLCFNVRD 348 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLl-PCrHlclC~~C~~~-----l~~CPvCr~~i~ 348 (356)
...|.||++.-.+.+.+ ||+|. +|..|... -..||+|+.++.
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 46899999998887766 99998 89999755 347999999874
No 46
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.23 E-value=0.00018 Score=54.34 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=36.7
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhh-----CCCCCCCccccCc
Q 018409 305 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~ 349 (356)
....|.+|.+--.+-+.+||||. +|..|... ...||+|+.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 35689999998888888899999 89999654 3579999998764
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.17 E-value=0.00012 Score=60.02 Aligned_cols=42 Identities=26% Similarity=0.698 Sum_probs=36.3
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhhC--CCCCCCccccC
Q 018409 306 GPACKGCRKRVASVVLL-PCRHLCVCTECDRVV--QACPLCFNVRD 348 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLl-PCrHlclC~~C~~~l--~~CPvCr~~i~ 348 (356)
...|.||++.-.+.+++ ||||. +|..|.... ..||+|+.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 46899999998888888 99999 899998765 57999999874
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.16 E-value=0.00018 Score=59.08 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=37.3
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhhC-----CCCCCCccccCc
Q 018409 305 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-----~~CPvCr~~i~~ 349 (356)
....|.||++....-+.+||+|. +|..|.... ..||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 35689999999888888999998 899997552 499999998865
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.10 E-value=0.00016 Score=58.50 Aligned_cols=41 Identities=22% Similarity=0.456 Sum_probs=30.9
Q ss_pred cccccccccc------------------cceEEeCCCCcccchhhHhh---------CCCCCCCccccC
Q 018409 307 PACKGCRKRV------------------ASVVLLPCRHLCVCTECDRV---------VQACPLCFNVRD 348 (356)
Q Consensus 307 ~~C~vC~~~~------------------~~vlLlPCrHlclC~~C~~~---------l~~CPvCr~~i~ 348 (356)
..|.||++.- ..+.++||+|. +|..|... -..||+||..+.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 4788887764 23448899998 99999543 248999998764
No 50
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.96 E-value=0.00044 Score=56.25 Aligned_cols=51 Identities=22% Similarity=0.597 Sum_probs=39.4
Q ss_pred Ccccccccccccccce-------EEeCCCCcccchhhHhh----CCCCCCCccccC--ceEEEee
Q 018409 304 VSGPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRD--SSVEVFL 355 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~v-------lLlPCrHlclC~~C~~~----l~~CPvCr~~i~--~sV~V~l 355 (356)
.....|.+|.+.-... +.+||+|. +|..|... ...||+||.++. ..+.+|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 3456899999875553 78899999 89999754 479999999876 3556654
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.95 E-value=0.00034 Score=56.92 Aligned_cols=44 Identities=25% Similarity=0.650 Sum_probs=35.2
Q ss_pred cccccccccccccce-------EEeCCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 305 SGPACKGCRKRVASV-------VLLPCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~~~~v-------lLlPCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
....|.||++.-..- +++||||. +|..|... -..||+|+..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 356899999876553 88899997 89999755 3599999998764
No 52
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=96.92 E-value=0.0027 Score=57.05 Aligned_cols=45 Identities=7% Similarity=-0.197 Sum_probs=36.4
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHhh-----CCCCCCCccccCc
Q 018409 304 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 349 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~ 349 (356)
+....|.+|++-..+-+++||||. .|..|-.. -..||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 345789999999999888899998 89999443 1369999998764
No 53
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.91 E-value=0.00047 Score=56.07 Aligned_cols=43 Identities=28% Similarity=0.520 Sum_probs=36.7
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhh-----CCCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~ 349 (356)
...|.||++...+.+.+||||. +|..|... -..||+|+.++..
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4689999999999888999999 89999654 3589999998764
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.0011 Score=51.29 Aligned_cols=40 Identities=30% Similarity=0.560 Sum_probs=28.5
Q ss_pred cccccccc---cc-ceEEeCCCCcccchhhHhh----CCCCCCCccccC
Q 018409 308 ACKGCRKR---VA-SVVLLPCRHLCVCTECDRV----VQACPLCFNVRD 348 (356)
Q Consensus 308 ~C~vC~~~---~~-~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~ 348 (356)
.|.+|.+. .. .+++.+|+|. ++..|... -..||+||.++.
T Consensus 28 ~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 28 ACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred cCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcc
Confidence 57777653 22 3344469999 89999764 358999999865
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=96.47 E-value=0.00046 Score=59.08 Aligned_cols=42 Identities=24% Similarity=0.582 Sum_probs=35.4
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhhC-----CCCCCCcccc
Q 018409 305 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVR 347 (356)
Q Consensus 305 ~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-----~~CPvCr~~i 347 (356)
....|.||.+--..-+.+||||. +|..|.... ..||+||.++
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 46789999998888788899999 899997663 3899999975
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.32 E-value=0.0022 Score=58.24 Aligned_cols=44 Identities=7% Similarity=-0.177 Sum_probs=36.6
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhh-----CCCCCCCccccCc
Q 018409 305 SGPACKGCRKRVASVVLLPCRHLCVCTECDRV-----VQACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~ 349 (356)
....|.||.+-..+-+.+||||. +|..|-.. -..||+|+.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45689999999999999999998 89999553 2359999998763
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.29 E-value=0.0018 Score=55.92 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=37.5
Q ss_pred cccccccccccccceEEeCCCCcccchhhHhhC-----CCCCCCccccCc
Q 018409 305 SGPACKGCRKRVASVVLLPCRHLCVCTECDRVV-----QACPLCFNVRDS 349 (356)
Q Consensus 305 ~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l-----~~CPvCr~~i~~ 349 (356)
....|.||++--.+-+.+||||. +|..|.... ..||+||.++..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 35789999999888888999999 899997653 499999998875
No 58
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.25 E-value=0.0055 Score=49.35 Aligned_cols=45 Identities=13% Similarity=-0.086 Sum_probs=37.6
Q ss_pred CcccccccccccccceEEeCCC-CcccchhhHhh----CCCCCCCccccCc
Q 018409 304 VSGPACKGCRKRVASVVLLPCR-HLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlLlPCr-HlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
+....|.||.+--.+-+++||| |. +|..|-.. ...||+|+.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4467999999999999999999 98 89999654 3589999998763
No 59
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.17 E-value=0.0064 Score=49.15 Aligned_cols=45 Identities=9% Similarity=-0.100 Sum_probs=38.1
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 304 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
+....|.+|++--.+-+.+||||. .|..|-.. ...||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 456799999999999999999999 89999654 3589999998764
No 60
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.01 E-value=0.0062 Score=47.54 Aligned_cols=45 Identities=9% Similarity=-0.096 Sum_probs=37.7
Q ss_pred CcccccccccccccceEEeCCCCcccchhhHhh----CCCCCCCccccCc
Q 018409 304 VSGPACKGCRKRVASVVLLPCRHLCVCTECDRV----VQACPLCFNVRDS 349 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~----l~~CPvCr~~i~~ 349 (356)
+....|.+|.+--.+-+.+||||. .|..|-.. ...||+|+.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 346799999999999999999998 89999544 3699999998754
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=95.73 E-value=0.0059 Score=50.14 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=23.7
Q ss_pred eEEeCCCCcccchhhHhh----CCCCCCCcccc
Q 018409 319 VVLLPCRHLCVCTECDRV----VQACPLCFNVR 347 (356)
Q Consensus 319 vlLlPCrHlclC~~C~~~----l~~CPvCr~~i 347 (356)
++++||+|. ++..|... -..||+||...
T Consensus 68 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 68 VAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp EEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred EeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence 678899999 89999765 35899999974
No 62
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.42 E-value=0.0095 Score=49.25 Aligned_cols=42 Identities=24% Similarity=0.712 Sum_probs=29.9
Q ss_pred cccccccccc-eEEeCCCCcccchhhHhh-----CCCCCCCccccCceE
Q 018409 309 CKGCRKRVAS-VVLLPCRHLCVCTECDRV-----VQACPLCFNVRDSSV 351 (356)
Q Consensus 309 C~vC~~~~~~-vlLlPCrHlclC~~C~~~-----l~~CPvCr~~i~~sV 351 (356)
|..|..--.. .-++||.|. +|.+|+.. .+.||+|+.+|...=
T Consensus 4 C~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 4 CDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp CTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred cCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 5566443333 237899995 99999854 469999999987643
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.71 E-value=0.027 Score=43.87 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=31.7
Q ss_pred ccccccccccc--cceEEeCCC-----CcccchhhHhh------CCCCCCCccccCc
Q 018409 306 GPACKGCRKRV--ASVVLLPCR-----HLCVCTECDRV------VQACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~--~~vlLlPCr-----HlclC~~C~~~------l~~CPvCr~~i~~ 349 (356)
...|.||++.. ...+++||+ |. +...|... ...||+|+..+..
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 45899998642 345678997 88 78888544 2489999997753
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=94.46 E-value=0.0067 Score=50.91 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=0.0
Q ss_pred eEEeCCCCcccchhhHhh----CCCCCCCcccc
Q 018409 319 VVLLPCRHLCVCTECDRV----VQACPLCFNVR 347 (356)
Q Consensus 319 vlLlPCrHlclC~~C~~~----l~~CPvCr~~i 347 (356)
++++||+|. ++..|... -..||+||.+.
T Consensus 79 v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~ 110 (117)
T 4a0k_B 79 VAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW 110 (117)
T ss_dssp ---------------------------------
T ss_pred cccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence 456799999 89999765 35899999874
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.39 E-value=0.044 Score=43.27 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=32.6
Q ss_pred ccccccccccccceEEeC-CCCcccchhhHhh----------CCCCCC--Cccc
Q 018409 306 GPACKGCRKRVASVVLLP-CRHLCVCTECDRV----------VQACPL--CFNV 346 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlP-CrHlclC~~C~~~----------l~~CPv--Cr~~ 346 (356)
...|.||.+--.+-+.+| |||. +|..|-.. ...||+ |+..
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 568999999999988887 9998 89999443 138999 8854
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.06 E-value=0.022 Score=44.59 Aligned_cols=40 Identities=25% Similarity=0.631 Sum_probs=28.9
Q ss_pred ccccccccccccc---eEEeCCCCcccchhhHhh------------CCCCCC--Cccc
Q 018409 306 GPACKGCRKRVAS---VVLLPCRHLCVCTECDRV------------VQACPL--CFNV 346 (356)
Q Consensus 306 ~~~C~vC~~~~~~---vlLlPCrHlclC~~C~~~------------l~~CPv--Cr~~ 346 (356)
...|.||++.-.. +.|.||+|. +|..|... .-.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4589999976332 334589999 99999433 127999 9987
No 67
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=92.53 E-value=0.38 Score=33.76 Aligned_cols=33 Identities=30% Similarity=0.359 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018409 211 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 243 (356)
Q Consensus 211 KEeEIera~rrn~ELEERlrql~~E~QaWq~~A 243 (356)
.|.....+..+|.|||||+.-|..|++..+.+-
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 344444455699999999999999999988764
No 68
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.89 E-value=6.4 Score=35.62 Aligned_cols=52 Identities=31% Similarity=0.389 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHH
Q 018409 209 REKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEAT----AASLQAQLQQA 260 (356)
Q Consensus 209 ReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~----a~~Lra~LqQ~ 260 (356)
.|.|.||+.+.+++.+|..++.+|..|...|+.+......- ++.|+..|.++
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l 100 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999877655443 66666655543
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.26 E-value=0.16 Score=48.33 Aligned_cols=44 Identities=18% Similarity=0.315 Sum_probs=34.7
Q ss_pred CcccccccccccccceEE-eCCCCcccchhhHhhC------CCCCC--CccccC
Q 018409 304 VSGPACKGCRKRVASVVL-LPCRHLCVCTECDRVV------QACPL--CFNVRD 348 (356)
Q Consensus 304 ~~~~~C~vC~~~~~~vlL-lPCrHlclC~~C~~~l------~~CPv--Cr~~i~ 348 (356)
.....|.+|+.--.+=|. ..|||. +|+.|-... ..||+ |+..+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 345789999998888665 599997 899996652 26999 998654
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=84.70 E-value=0.49 Score=34.77 Aligned_cols=43 Identities=23% Similarity=0.452 Sum_probs=28.3
Q ss_pred ccccccccccccceEEeCCCCcc----cchhhHhh------CCCCCCCccccC
Q 018409 306 GPACKGCRKRVASVVLLPCRHLC----VCTECDRV------VQACPLCFNVRD 348 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlc----lC~~C~~~------l~~CPvCr~~i~ 348 (356)
...|.||++....-+++||.+.- +=..|... -..||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 46899999876666678986421 22334222 368999998764
No 71
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.52 E-value=2.8 Score=41.56 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 262 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~ 262 (356)
-++.++++||+.+.++..+|++.++.+..|...+.......|..-..|++.|+.+.-
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999999999999999999999999999988653
No 72
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=83.65 E-value=2.9 Score=31.15 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 243 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A 243 (356)
.-+.+.+++....+|.+|++++..|..|.+.|..+-
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888999999999999999999988763
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.27 E-value=34 Score=34.08 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 197 LGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 254 (356)
Q Consensus 197 l~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 254 (356)
+......+..+...++.++.+..+...++.+.++++..|...|...-+........|+
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 3344444444555555555555555555556666666666666665555555444333
No 74
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=82.77 E-value=10 Score=37.08 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQRH------YRALLGAAEESIA---RLLREKEAEVEKATRRNAEL 225 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rqrh------~r~ll~avE~~~~---~rLReKEeEIera~rrn~EL 225 (356)
.++.++|+.+.+++++.+.+.|.+- ...|..++|..++ +|+.|.|.||-..+-+..++
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 396 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777776543 2334455555443 34444444443333333333
No 75
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=80.50 E-value=16 Score=30.09 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018409 205 ARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQA 241 (356)
Q Consensus 205 ~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~ 241 (356)
..++|+.++||++.+..| ..|..|+..|..
T Consensus 64 ~~~v~eLe~everL~~EN-------q~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAEN-------LQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH-------HHHHHHHHhhcc
Confidence 678999999999998888 455678888875
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.48 E-value=24 Score=35.14 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018409 194 RALLGAAEESIARLLREKEAEVEKATRRNAELE---ARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 263 (356)
Q Consensus 194 r~ll~avE~~~~~rLReKEeEIera~rrn~ELE---ERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 263 (356)
...+..++.....++++.....+.+..++.+++ +.+..+....+.=+.....-......++..|.++...
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555444444444444433333333 4444444444443444443344445566666676553
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=79.45 E-value=0.45 Score=39.04 Aligned_cols=46 Identities=22% Similarity=0.582 Sum_probs=35.8
Q ss_pred ccccccccccccceEEeCCCCcccchhhHhhC----CCCCCCccccCceEEE
Q 018409 306 GPACKGCRKRVASVVLLPCRHLCVCTECDRVV----QACPLCFNVRDSSVEV 353 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlPCrHlclC~~C~~~l----~~CPvCr~~i~~sV~V 353 (356)
...|+.|+-.....| -|.--.+|..|-..| +.||+|..++...|+|
T Consensus 28 ~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 28 PQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 457999999988644 565445999998886 5999999988776654
No 78
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=77.60 E-value=1.2 Score=32.59 Aligned_cols=43 Identities=14% Similarity=-0.020 Sum_probs=34.3
Q ss_pred ccccccccccccceEEe-CCCCcccchhhHhhC----CCCCCCccccCc
Q 018409 306 GPACKGCRKRVASVVLL-PCRHLCVCTECDRVV----QACPLCFNVRDS 349 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLl-PCrHlclC~~C~~~l----~~CPvCr~~i~~ 349 (356)
...|.+|++-..+-++. ||||. .|+.|-... .+||+++.+...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 35799999988888888 99998 799995542 479999987753
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.31 E-value=52 Score=32.12 Aligned_cols=56 Identities=20% Similarity=0.208 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIM 262 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~ 262 (356)
...+.+.|++++++...+..++++++..|+..-..........+..-+++|+-+..
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 34455666777777777788888888889998888888888888888888877654
No 80
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=72.56 E-value=19 Score=28.57 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 180 QLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAA 230 (356)
Q Consensus 180 rLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlr 230 (356)
+-|..|+|+|+.-.-..|.-.+ ..-+.+-.|++||...+..|.+|.+-..
T Consensus 20 ~YWk~lAE~Rr~AL~eaL~EN~-~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 20 QYWKEVAEQRRKALYEALKENE-KLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777643333333322 3355566778888777777776665543
No 81
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=71.27 E-value=46 Score=28.07 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=53.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHH
Q 018409 156 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKR------QRHYRALLGAAEESIA---RLLREKEAEVEKATRRNAELE 226 (356)
Q Consensus 156 ~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~r------qrh~r~ll~avE~~~~---~rLReKEeEIera~rrn~ELE 226 (356)
-|+|.++-+ =..+-++|+.+.-+-...|.+.- .+-+..|..+++...+ +++.+.+.||...+.+..+.+
T Consensus 14 ~dGLrAq~E--CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ 91 (121)
T 3mq7_A 14 RDGLRAVME--ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDAS 91 (121)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556655433 23577788777666555555544 2223444455555333 467888888888888888888
Q ss_pred HHHHHHHHHHHHH
Q 018409 227 ARAAQLSVEAQVW 239 (356)
Q Consensus 227 ERlrql~~E~QaW 239 (356)
+.+.+|+.+++.-
T Consensus 92 ae~erlr~~~~~~ 104 (121)
T 3mq7_A 92 AEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhchhh
Confidence 8888888887743
No 82
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.20 E-value=62 Score=29.52 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQL 257 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~L 257 (356)
-+.....||+.+.++...||+.+..+..+...........++.+..++..|
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l 141 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLA 141 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666655555444444444333333333
No 83
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=71.09 E-value=23 Score=28.43 Aligned_cols=85 Identities=11% Similarity=0.204 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------HHHHHHhH
Q 018409 175 QAQGEQLRRALAEKRQRHYRALLGAA-EESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVW------QAKARAQE 247 (356)
Q Consensus 175 ~~q~ErLR~~L~E~rqrh~r~ll~av-E~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaW------q~~A~~nE 247 (356)
+...++|+..+.+....|.+.|-++- +..+- ++.|.-+..+.++...+..+|+.|..++..- -...+...
T Consensus 18 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~---~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 94 (127)
T 1ez3_A 18 RGFIDKIAENVEEVKRKHSAILASPNPDEKTK---EELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRK 94 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHH
Confidence 44556677777888888877654222 11111 2345566667778888888888887776531 12236677
Q ss_pred HHHHHHHHHHHHHHH
Q 018409 248 ATAASLQAQLQQAIM 262 (356)
Q Consensus 248 A~a~~Lra~LqQ~l~ 262 (356)
+.+.+|..+|..++.
T Consensus 95 ~q~~~L~~kf~e~m~ 109 (127)
T 1ez3_A 95 TQHSTLSRKFVEVMS 109 (127)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888899999988765
No 84
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=70.73 E-value=34 Score=26.38 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 204 IARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 254 (356)
Q Consensus 204 ~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 254 (356)
...+|++|.+||++.+...-.|..+|-.-..=+.-.++-+..-+..+++|.
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 346789999999999888777776665554444444444444445555554
No 85
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=70.68 E-value=2.7 Score=32.93 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018409 213 AEVEKATRRNAELEARAAQLSVEAQVWQAKA 243 (356)
Q Consensus 213 eEIera~rrn~ELEERlrql~~E~QaWq~~A 243 (356)
+|+|-.+.+..||+||+.+|..||...+..|
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3777788899999999999999998766543
No 86
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=70.33 E-value=19 Score=26.27 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSVEAQ 237 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~E~Q 237 (356)
+.+.+++.....|.+|...+..|..|..
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555444443
No 87
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.03 E-value=46 Score=27.61 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 018409 173 FLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAAS 252 (356)
Q Consensus 173 ~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~ 252 (356)
=|+..+++|+..+++-|.+...+-- -+...+-..+.||...+..+-.|-.+||.|...|...-..++..-+.+..
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~-----e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYA-----QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 3566677777777777665544321 11122233566888999999999999999999999999999998899999
Q ss_pred HHHHHHHHHHhc
Q 018409 253 LQAQLQQAIMSG 264 (356)
Q Consensus 253 Lra~LqQ~l~~~ 264 (356)
+.+.|.+++-..
T Consensus 82 ~E~k~n~aiErn 93 (111)
T 2v66_B 82 FEQRLNQAIERN 93 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887543
No 88
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=69.68 E-value=23 Score=27.81 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=19.5
Q ss_pred cchhhhhhhhh----hhhhhhHHHHHHHHHHHHH
Q 018409 150 SLLSFLSDDLA----SPIKRQRDELDQFLQAQGE 179 (356)
Q Consensus 150 ~~~s~l~d~l~----~~l~qQ~~EID~~i~~q~E 179 (356)
+++|.+.|-|. -.|.+-+.|||.+-+.+.|
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~E 36 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEED 36 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455677653 3466777888888777754
No 89
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=69.47 E-value=5.8 Score=26.96 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEA 227 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEE 227 (356)
+-|-+|++||.+.+.+|.+|.|
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHh
Confidence 3455799999999999999876
No 90
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=68.68 E-value=40 Score=26.40 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHH-------HHHHHHHHHHHHHH
Q 018409 195 ALLGAAEESIARLLREK----EAEVEKATRRNAELE-------ARAAQLSVEAQVWQ 240 (356)
Q Consensus 195 ~ll~avE~~~~~rLReK----EeEIera~rrn~ELE-------ERlrql~~E~QaWq 240 (356)
+|++|||.++-+||||+ -+||+.+++-..||. +-|.+|..|-..|.
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~ 59 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVD 59 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 46788888888887775 567777777665554 44555555555544
No 91
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=68.18 E-value=43 Score=26.56 Aligned_cols=51 Identities=29% Similarity=0.474 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018409 178 GEQLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAELEARAAQ 231 (356)
Q Consensus 178 ~ErLR~~L~E~rqrh~r~ll~avE~--~~~~rLReKEeEIera~rrn~ELEERlrq 231 (356)
.+.-|..|+|+|+. +|-.++++ ..-.++-.|++||......|.+|.+-+.+
T Consensus 26 se~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 26 SSQYWKEVAEKRRK---ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777763 33333333 33455667788887777777776655543
No 92
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=68.06 E-value=19 Score=29.17 Aligned_cols=26 Identities=27% Similarity=0.435 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQL 232 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql 232 (356)
++|+++.||.+..+....||-||+.|
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999888766
No 93
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=67.80 E-value=7.5 Score=26.37 Aligned_cols=29 Identities=34% Similarity=0.355 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~~E 235 (356)
|+.+.|+.++.+..++++||.-+.+|...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56778899999999999999777776543
No 94
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.98 E-value=39 Score=26.66 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 018409 221 RNAELEARAAQLSVEAQVWQAK 242 (356)
Q Consensus 221 rn~ELEERlrql~~E~QaWq~~ 242 (356)
....|+....+|..|-..|+.+
T Consensus 49 ~~~~L~~en~qLk~E~~~wq~R 70 (81)
T 2jee_A 49 QREELERENNHLKEQQNGWQER 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3344777888888899999887
No 95
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=65.83 E-value=13 Score=24.31 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 211 KEAEVEKATRRNAELEARAAQLSVEAQV 238 (356)
Q Consensus 211 KEeEIera~rrn~ELEERlrql~~E~Qa 238 (356)
.|+|+.+.+.--.+|.+|+.+|..-.|+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888889999999998876654
No 96
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=65.80 E-value=41 Score=26.44 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 180 QLRRALAEKRQRHYRALLGAAEE--SIARLLREKEAEVEKATRRNAELEARAAQL 232 (356)
Q Consensus 180 rLR~~L~E~rqrh~r~ll~avE~--~~~~rLReKEeEIera~rrn~ELEERlrql 232 (356)
+-|..|.|+|+. +|-.++++ ..-+.+-+|++||.++...|..|.|-+.++
T Consensus 16 ~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 16 QYWKEVAEQRRK---ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp THHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666663 33334433 334566778888877777776666554443
No 97
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=64.69 E-value=21 Score=29.67 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHH
Q 018409 219 TRRNAELEARAAQLSVEAQVWQAKARAQEAT----AASLQAQLQQA 260 (356)
Q Consensus 219 ~rrn~ELEERlrql~~E~QaWq~~A~~nEA~----a~~Lra~LqQ~ 260 (356)
-+++.+|..+..+|..|...|+.+....... ++.|+..|.++
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~l 47 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 47 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688899999999999999999888776654 45555555554
No 98
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=63.86 E-value=38 Score=31.04 Aligned_cols=61 Identities=26% Similarity=0.282 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 179 EQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 254 (356)
Q Consensus 179 ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 254 (356)
+.-|..|+|+|+. +|-.+++ |-+....+...|+|.+..|..|+..-+.+|.--+.+|..|.
T Consensus 96 e~YWk~lAE~RR~---AL~eaLe------------EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~ 156 (209)
T 2wvr_A 96 SQYWKEVAEKRRK---ALYEALK------------ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIE 156 (209)
T ss_dssp TTHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888873 3333343 33333333444444445555555555555555555555543
No 99
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=63.63 E-value=8.6 Score=26.08 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
|+.+.|+-+|....++++|+..+.+|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566778888888999999997666654
No 100
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=63.62 E-value=54 Score=26.00 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLSVEAQVWQAK 242 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~E~QaWq~~ 242 (356)
+++...+.|..|..+|.+|..|...++.+
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666667777777666666655544
No 101
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=60.90 E-value=44 Score=25.45 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 211 KEAEVEKATRRNAELEARAAQLSVEAQV 238 (356)
Q Consensus 211 KEeEIera~rrn~ELEERlrql~~E~Qa 238 (356)
.+.+.+.+...|..|.+.+..|..|+..
T Consensus 41 le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 41 LKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555555555543
No 102
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.18 E-value=82 Score=26.69 Aligned_cols=70 Identities=10% Similarity=0.159 Sum_probs=42.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018409 158 DLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQ 237 (356)
Q Consensus 158 ~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~Q 237 (356)
.|+.++.+-+.++|.+. .+.+.+...+.+.+. .++ .+--++.+.+.|++...+++.+|++++..|..|..
T Consensus 65 NiadEl~k~~~~~~~L~-~~l~~~~kE~~~lK~----el~-----~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLS-LDIENKDKEIYDLKH----ELI-----AAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666553 334444444444432 111 12235667777888889999999999998877653
No 103
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.07 E-value=15 Score=24.72 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
|--+--.+|+.++|.|.-||+.++.|+
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 333455689999999999999998763
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=57.16 E-value=2.9 Score=43.70 Aligned_cols=7 Identities=0% Similarity=-0.296 Sum_probs=3.2
Q ss_pred Cccchhh
Q 018409 52 RKRGREV 58 (356)
Q Consensus 52 rkr~r~~ 58 (356)
-....|+
T Consensus 32 ~~~~~~~ 38 (727)
T 4b8c_D 32 LHPHLDD 38 (727)
T ss_dssp TSGGGTS
T ss_pred ccCCCCC
Confidence 4444444
No 105
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=57.14 E-value=60 Score=27.36 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 205 ARLLREKEAEVEKATRRNAELEARAA 230 (356)
Q Consensus 205 ~~rLReKEeEIera~rrn~ELEERlr 230 (356)
-.+|+++.+|+|+.++.|.+|.-|+.
T Consensus 84 nq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 84 NHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 35789999999999999999888874
No 106
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=57.05 E-value=52 Score=23.77 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAK 242 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~ 242 (356)
+.+.+.+++.....|.+|...+..|..|...|..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456667777888888888888888888777654
No 107
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=56.79 E-value=61 Score=27.79 Aligned_cols=87 Identities=9% Similarity=0.210 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHHhH
Q 018409 174 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQV------WQAKARAQE 247 (356)
Q Consensus 174 i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~Qa------Wq~~A~~nE 247 (356)
|+...++++..+.+..+.|.+.|.++-.....+ ++.+.-+..+.+....+..+|+.|..++.. +-...+...
T Consensus 48 I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k--~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~ 125 (180)
T 1s94_A 48 IRAMIDKISDNVDAVKKKHSDILSAPQTDDQMK--EELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRK 125 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 344555667777777777766655332222111 334455566677777888888888765421 222224455
Q ss_pred HHHHHHHHHHHHHHH
Q 018409 248 ATAASLQAQLQQAIM 262 (356)
Q Consensus 248 A~a~~Lra~LqQ~l~ 262 (356)
...++|...+..++.
T Consensus 126 ~q~~~L~~kf~~~m~ 140 (180)
T 1s94_A 126 TQYSTISRKFVEVMS 140 (180)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667888888888764
No 108
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=56.20 E-value=1.4e+02 Score=30.94 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 169 ELDQFLQAQGEQLRRALAEKRQRHYRAL---LGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARA 245 (356)
Q Consensus 169 EID~~i~~q~ErLR~~L~E~rqrh~r~l---l~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~ 245 (356)
+-|+=|.--+++||..|++. ++..... +..+-....+++..-...-.....-..|||.++.-|..+.+.=-..-+.
T Consensus 57 kqErDltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrv 135 (562)
T 3ghg_A 57 EVNQDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQL 135 (562)
T ss_dssp HHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556777777777 3333322 2222223334444444222233333458888887777766554443344
Q ss_pred hHHHHHHHHHHHHH
Q 018409 246 QEATAASLQAQLQQ 259 (356)
Q Consensus 246 nEA~a~~Lra~LqQ 259 (356)
-++.+..++..++.
T Consensus 136 LQsnLedq~~kIQR 149 (562)
T 3ghg_A 136 LQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555544444
No 109
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=55.84 E-value=1.4e+02 Score=33.30 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 018409 212 EAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 212 EeEIera~rrn~ELEERlrql~ 233 (356)
++++++..+...+|||++.++.
T Consensus 997 ~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 997 RKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555444
No 110
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.56 E-value=31 Score=26.66 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQV 238 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~Qa 238 (356)
||+||+-|+...++..|.++.|+.|..|..-
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666555443
No 111
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=55.39 E-value=86 Score=25.73 Aligned_cols=89 Identities=22% Similarity=0.409 Sum_probs=47.9
Q ss_pred hhhhhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 161 SPIKRQRDELDQF------LQAQGEQLRRALAEKRQRHYRALL--GAAEESIARLLREKEAEVEKATRRNAELEARAAQL 232 (356)
Q Consensus 161 ~~l~qQ~~EID~~------i~~q~ErLR~~L~E~rqrh~r~ll--~avE~~~~~rLReKEeEIera~rrn~ELEERlrql 232 (356)
.+|..-+..||.+ |.++.+.++..+++-|.+.-..+- ..+|..+ ..||. .++.+.-...+||.++..|
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di-~~lrK---~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTL-QSFRQ---DVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHhhh---cccHHHHHHHHHHHHHHHH
Confidence 3444445555543 456778888888888876544332 2222221 11221 2333333457788888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 233 SVEAQVWQAKARAQEATAASLQAQ 256 (356)
Q Consensus 233 ~~E~QaWq~~A~~nEA~a~~Lra~ 256 (356)
..|-.-.+ +..|.-+..|+++
T Consensus 96 ~eEl~FLK---k~heeEl~eLq~q 116 (119)
T 3ol1_A 96 QEEIAFLK---KLHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHH---HHHHHHHHHHHSC
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 77765433 2345555555543
No 112
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=53.86 E-value=34 Score=23.94 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSVEA 236 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~E~ 236 (356)
.++---+.||++...+..+|..|++.|...+
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444568899999999999999999988765
No 113
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.85 E-value=62 Score=23.66 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 243 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A 243 (356)
+-+.+.+++.....|.+|...|..|..|...|..+-
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777778888888888888877777653
No 114
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=50.78 E-value=1.1e+02 Score=25.61 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=23.9
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 018409 150 SLLSFLSDDLASPIKRQRDELDQFLQAQGEQ 180 (356)
Q Consensus 150 ~~~s~l~d~l~~~l~qQ~~EID~~i~~q~Er 180 (356)
.+.++.+|-|.-+|+|-+.+.|.+++.|.++
T Consensus 28 ~~~~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 28 IPFPVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp -----CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999999776
No 115
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=49.48 E-value=45 Score=24.29 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018409 221 RNAELEARAAQLSVEAQVWQAKARAQEATAASLQA 255 (356)
Q Consensus 221 rn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra 255 (356)
+..+||.++..|..|+..+......-...+..|+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999998776555555555543
No 116
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=47.90 E-value=95 Score=24.04 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLSVEAQVWQA 241 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~E~QaWq~ 241 (356)
+++...+.|..|..+|.+|..|...++.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566677777777777777666554
No 117
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=47.00 E-value=2.3e+02 Score=28.21 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=44.8
Q ss_pred hcCC-Ccchhhhhhhhhh------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 018409 145 MCQS-PSLLSFLSDDLAS------PIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALL--GAAEESIARLLREKEAEV 215 (356)
Q Consensus 145 ~~~~-~~~~s~l~d~l~~------~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll--~avE~~~~~rLReKEeEI 215 (356)
+|.. ..... +.+|+.. .|+.--++.++=|+..++.|+..|.+..+-|..... ..+-....+++...+.-=
T Consensus 30 ~Ck~~d~~~C-~DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dnd 108 (390)
T 1deq_A 30 ACKETGWPFC-SDEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNND 108 (390)
T ss_pred ccCCCCCCCC-chhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccch
Confidence 3443 33333 4666644 466666677777888888888888887776644433 333333333333322222
Q ss_pred HHHHHHhHHHHHHHH
Q 018409 216 EKATRRNAELEARAA 230 (356)
Q Consensus 216 era~rrn~ELEERlr 230 (356)
.....-+.+||.++.
T Consensus 109 n~~~e~s~eLe~~i~ 123 (390)
T 1deq_A 109 NTFKQINEDLRSRIE 123 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 233333445555543
No 118
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=45.96 E-value=1.4e+02 Score=30.89 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 018409 209 REKEAEVEKATRRNAELEARAA 230 (356)
Q Consensus 209 ReKEeEIera~rrn~ELEERlr 230 (356)
-+..+||+.+.+--+++.||+.
T Consensus 324 e~a~ael~~a~k~~a~~~er~~ 345 (551)
T 2b5u_A 324 ERARAELNQANEDVARNQERQA 345 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555555544
No 119
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=45.88 E-value=56 Score=30.11 Aligned_cols=20 Identities=35% Similarity=0.358 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 018409 215 VEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 215 Iera~rrn~ELEERlrql~~ 234 (356)
+++.+.||.+||++++.|..
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445566666777766653
No 120
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=44.40 E-value=29 Score=23.24 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
||.+.|+.+|.+..+|.+||.-+.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566778888888888888887776654
No 121
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=43.94 E-value=5.3 Score=39.71 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=28.4
Q ss_pred ccccccccccccc---e---E--EeCCCCcccchhhHhh---------------CCCCCCCccccCceE
Q 018409 306 GPACKGCRKRVAS---V---V--LLPCRHLCVCTECDRV---------------VQACPLCFNVRDSSV 351 (356)
Q Consensus 306 ~~~C~vC~~~~~~---v---l--LlPCrHlclC~~C~~~---------------l~~CPvCr~~i~~sV 351 (356)
...|.||++.-.. + . -.+|+|. +-..|-.. ...||+|+.+|..+.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 3478888864333 1 1 1368887 56667422 137999999987654
No 122
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=43.89 E-value=2.6e+02 Score=27.88 Aligned_cols=66 Identities=12% Similarity=0.126 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 018409 163 IKRQRDELDQFLQAQGEQLRRALAE-------------KRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARA 229 (356)
Q Consensus 163 l~qQ~~EID~~i~~q~ErLR~~L~E-------------~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERl 229 (356)
+.+-..+|+.|++.-.+.||.-+.. --++|+.-|=..|...+. .||....-|+....+..-||.-|
T Consensus 79 ~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 79 YQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556777777666666654443 223455555566666666 77777777777777777777666
No 123
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=42.08 E-value=32 Score=22.85 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
||.+.|+-+|....++.+|+.-+.+|.
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456677778888888888887666654
No 124
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.02 E-value=30 Score=23.04 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
||-+.|+.+|....+|.+|+.-+.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344567777777888888887666654
No 125
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.98 E-value=88 Score=30.95 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018409 209 REKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAI 261 (356)
Q Consensus 209 ReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l 261 (356)
.+.++|++...++..+|++.++++..|...-...-...|..-..|++.|+.+.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34566777777777777777777777776666555555556667777777753
No 126
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=41.94 E-value=90 Score=23.00 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018409 222 NAELEARAAQLSVEAQV 238 (356)
Q Consensus 222 n~ELEERlrql~~E~Qa 238 (356)
..+||.++..|..|+..
T Consensus 32 ~~~Le~~v~~L~~eN~~ 48 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYH 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555544
No 127
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=41.82 E-value=1.5e+02 Score=24.63 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQ 190 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rq 190 (356)
..||+ |+..+++||..|+....
T Consensus 15 ~~Ie~-Lkreie~lk~ele~l~~ 36 (120)
T 3i00_A 15 HLIER-LYREISGLKAQLENMKT 36 (120)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH
Confidence 35555 56666777766665543
No 128
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.54 E-value=2.8e+02 Score=34.78 Aligned_cols=12 Identities=17% Similarity=0.332 Sum_probs=5.4
Q ss_pred hhhhHHHHHHHH
Q 018409 163 IKRQRDELDQFL 174 (356)
Q Consensus 163 l~qQ~~EID~~i 174 (356)
|.+-..|.|.++
T Consensus 1950 L~~k~~ea~~~l 1961 (3245)
T 3vkg_A 1950 LDVKNEQANQKL 1961 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444555443
No 129
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=41.40 E-value=37 Score=22.60 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
||-+.|+-+|.+..+|.+||.-+.+|.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345667777777888888887666554
No 130
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=40.36 E-value=8.8 Score=29.72 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=22.4
Q ss_pred cccccccccc---ccceEEeCCCCcccchhhHhh
Q 018409 306 GPACKGCRKR---VASVVLLPCRHLCVCTECDRV 336 (356)
Q Consensus 306 ~~~C~vC~~~---~~~vlLlPCrHlclC~~C~~~ 336 (356)
...|.+|.+. ++...-++|+|. +|..|...
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 3579999863 444444899999 89999775
No 131
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=40.35 E-value=52 Score=23.69 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 205 ARLLREKEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 205 ~~rLReKEeEIera~rrn~ELEERlrql~~E 235 (356)
..|+|+...++..+..+|..|.+-++....|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~e 38 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQ 38 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888888888888877766654
No 132
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=39.78 E-value=2.2e+02 Score=28.85 Aligned_cols=78 Identities=17% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 018409 170 LDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKE-------AEVEKATRRNAELEARAAQLSVEAQVWQAK 242 (356)
Q Consensus 170 ID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKE-------eEIera~rrn~ELEERlrql~~E~QaWq~~ 242 (356)
||.++.+..++ |..+.+.. ..++--.++...+++..+.++ ++++.+..+..+|.++++.+
T Consensus 69 ~~~~~~ld~~~-r~~~~~~~--~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l---------- 135 (501)
T 1wle_A 69 LPGIISTWQEL-RQLREQIR--SLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLL---------- 135 (501)
T ss_dssp HHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHH----------
Confidence 77777765433 22211111 122223444545554444432 35555555555555555544
Q ss_pred HHHhHHHHHHHHHHHHHHHHhc
Q 018409 243 ARAQEATAASLQAQLQQAIMSG 264 (356)
Q Consensus 243 A~~nEA~a~~Lra~LqQ~l~~~ 264 (356)
|+....+...|+..+...
T Consensus 136 ----~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 136 ----YPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp ----HHHHHHHHHHHHHHHTTS
T ss_pred ----HHHHHHHHHHHHHHHHhC
Confidence 344455666666666543
No 133
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=39.71 E-value=38 Score=22.66 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
|+.+.|+-+|....+|.+|+.-+.+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566677777888888888887666654
No 134
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.62 E-value=64 Score=24.92 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKA 218 (356)
Q Consensus 206 ~rLReKEeEIera 218 (356)
++|.+||++|...
T Consensus 47 k~L~ekd~eI~~L 59 (72)
T 3nmd_A 47 LELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 135
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.46 E-value=1.1e+02 Score=31.87 Aligned_cols=72 Identities=10% Similarity=0.072 Sum_probs=38.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 161 SPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQLSV 234 (356)
Q Consensus 161 ~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql~~ 234 (356)
.+|++-..+|+.|++.-.|.||..+.... .+...+..+-..+-+++-..+++|..-..+...|+-.|+.+..
T Consensus 74 EdlsKnsKdseqy~k~~~E~Lr~rq~q~~--dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~ 145 (562)
T 3ghg_A 74 FEYQKNNKDSHSLTTNIMEILRGDFSSAN--NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLV 145 (562)
T ss_dssp THHHHHHHHHHHHHHHHHHTTSSHHHHHH--HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhchhHHHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466667888888888777776665554 3333444444334444444444444444444444444444333
No 136
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=38.50 E-value=43 Score=22.41 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
||-+.|+-++....+|.+|+..+.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445566667777777778877766654
No 137
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=38.02 E-value=1e+02 Score=27.10 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 200 AEESIARLLREKEAEVEKATRRNAELEARAAQL 232 (356)
Q Consensus 200 vE~~~~~rLReKEeEIera~rrn~ELEERlrql 232 (356)
+.+.+..+|.+.|..|+.+ +..|||||++.
T Consensus 6 ~~ee~~e~L~~~e~l~~el---~~tWeeKl~~t 35 (184)
T 4egx_A 6 FSEEAIERLKETEKIIAEL---NETWEEKLRRT 35 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH---HhHHHHHHHHH
Confidence 3445566777777666554 34677777653
No 138
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=37.66 E-value=35 Score=24.60 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 018409 205 ARLLREKEAEVEKATRRNAELEA 227 (356)
Q Consensus 205 ~~rLReKEeEIera~rrn~ELEE 227 (356)
-+++++.|.++.++++++..|||
T Consensus 13 Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 13 RKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 46788888889999998888886
No 139
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=37.34 E-value=1.4e+02 Score=23.36 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=17.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 018409 216 EKATRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 216 era~rrn~ELEERlrql~~E~QaWq 240 (356)
+.+..+|.+||++|+.+......-+
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344588999999998887555443
No 140
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=36.08 E-value=1.8e+02 Score=23.84 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 018409 219 TRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 219 ~rrn~ELEERlrql~~E~QaWq 240 (356)
..+..||+..|++|.+|||...
T Consensus 64 ~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999987644
No 141
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=35.04 E-value=1.8e+02 Score=23.52 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=5.9
Q ss_pred hhhhHHHHHHHH
Q 018409 163 IKRQRDELDQFL 174 (356)
Q Consensus 163 l~qQ~~EID~~i 174 (356)
|-+|..|+.-++
T Consensus 23 L~kQk~eL~~~l 34 (101)
T 1d7m_A 23 LIKQKDQLNSLL 34 (101)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 142
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=34.18 E-value=41 Score=34.65 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018409 221 RNAELEARAAQLSVEAQVWQAKARAQEATAASLQA 255 (356)
Q Consensus 221 rn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra 255 (356)
+..||++||+++..|...|+......|-+|.-|-.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e 370 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEE 370 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34555556666555555555554444444444433
No 143
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.69 E-value=59 Score=21.76 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
||.+.|+-+|.+..+|.+|+.-+.+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 566777778888888888887666554
No 144
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=33.37 E-value=3.1e+02 Score=25.69 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=65.1
Q ss_pred hhhhhhhHHHHHHHHHHH-----------HHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 160 ASPIKRQRDELDQFLQAQ-----------GEQLR---------RALAEKRQRHYRALLGAAEESIARLLREKEAEVEKAT 219 (356)
Q Consensus 160 ~~~l~qQ~~EID~~i~~q-----------~ErLR---------~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~ 219 (356)
.-.+.+|..|+|-|-+-| +..+- ..+.+.+..|..+|+..+++ .-++|.+.-.
T Consensus 31 ~Kl~KKQqKEl~~LkKKH~Ke~~~lqK~~~~~~~~~s~~~~~~~kv~el~~~q~~el~~l~~~-------q~~eE~~~k~ 103 (251)
T 1jad_A 31 LKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHLGEE-------YHDGIRRRKE 103 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 335677888888877743 33321 23456666666677666663 3567777777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHH
Q 018409 220 RRNAELEARAAQLSVEAQVWQAKAR--AQEATAASLQAQLQQ 259 (356)
Q Consensus 220 rrn~ELEERlrql~~E~QaWq~~A~--~nEA~a~~Lra~LqQ 259 (356)
....++.++|+.|..|+|+=|-.+. .+|.-...|+..+.-
T Consensus 104 ~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~k 145 (251)
T 1jad_A 104 QHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEA 145 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999886654 577777778877764
No 145
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.32 E-value=58 Score=21.75 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
||-+.|+-+|....+|.+||.-+.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455667777777778888876665553
No 146
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=32.15 E-value=2.5e+02 Score=24.42 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 018409 212 EAEVEKATRRNAELEARAAQLSVEAQ 237 (356)
Q Consensus 212 EeEIera~rrn~ELEERlrql~~E~Q 237 (356)
..|+...+-.+..+|++++.|..|+.
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777778888899999999999994
No 147
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=31.84 E-value=1.8e+02 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.353 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKA 243 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A 243 (356)
.++.++||.++.++...||. +.-++..|+.+|
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~----iqs~aK~LRnKA 80 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEK----MQNNSKLLRNKA 80 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHH
Confidence 34566677666666555442 333444444443
No 148
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=31.56 E-value=59 Score=21.74 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 018409 207 LLREKEAEVEKATRRNAELEARAAQLS 233 (356)
Q Consensus 207 rLReKEeEIera~rrn~ELEERlrql~ 233 (356)
||.+.|+.+|....++.+|+.-+.+|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566677777777778888876666654
No 149
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=31.42 E-value=86 Score=24.02 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 173 FLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKA 218 (356)
Q Consensus 173 ~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera 218 (356)
=|..|..-++..|.++|+.---.=|..+| .-|||.+.||++.
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe----~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQ----ENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHH----HHHHHHHHHHHHH
Confidence 44455566666666766554444445555 4477777777654
No 150
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=30.54 E-value=92 Score=26.66 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=4.9
Q ss_pred HHHHhHHHHHHH
Q 018409 218 ATRRNAELEARA 229 (356)
Q Consensus 218 a~rrn~ELEERl 229 (356)
++++-.++|.||
T Consensus 51 ak~~q~~~e~rI 62 (158)
T 2p4v_A 51 NKKRLREIDRRV 62 (158)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444444
No 151
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.45 E-value=24 Score=33.84 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=30.8
Q ss_pred ccccccccccccceEEeC----CCC-cccchhhHhh--C--CCCCCCcccc
Q 018409 306 GPACKGCRKRVASVVLLP----CRH-LCVCTECDRV--V--QACPLCFNVR 347 (356)
Q Consensus 306 ~~~C~vC~~~~~~vlLlP----CrH-lclC~~C~~~--l--~~CPvCr~~i 347 (356)
...|.+|++.+.-.++.. =|+ ++.|..|... + -.||.|....
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 468999999998766652 333 4579999765 2 4999999864
No 152
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.41 E-value=1.8e+02 Score=22.25 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=17.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 018409 215 VEKATRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 215 Iera~rrn~ELEERlrql~~E~QaWq 240 (356)
|+.+..+|.+||++|+.+......-+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444588899999998887554433
No 153
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.16 E-value=1.5e+02 Score=23.43 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=30.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 219 TRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 219 ~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
+.+..+++.++..|..||..-+.....-+..+..|+.-|-+
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788999999999998887766666666666654444
No 154
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=30.05 E-value=1.1e+02 Score=22.03 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 174 LQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKAT 219 (356)
Q Consensus 174 i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~ 219 (356)
+..|..-++..|.++++.---.=|..+| .-|||.+.||++..
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le----~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQ----ENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHH----HHHHHHHHHHHHHh
Confidence 4556667777777777654444445555 34677777776543
No 155
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.46 E-value=2.4e+02 Score=23.20 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=6.6
Q ss_pred HHHHHhHHHHHHHHHHH
Q 018409 217 KATRRNAELEARAAQLS 233 (356)
Q Consensus 217 ra~rrn~ELEERlrql~ 233 (356)
.+..+..+||+-+.++.
T Consensus 81 ~~q~~i~~lE~eL~~~r 97 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLR 97 (131)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444333
No 156
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=29.45 E-value=1.9e+02 Score=22.10 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 184 ALAEKRQRHYRALLGAAEESI-----------ARLLREKEAEVEKATRRNAELEARAAQLSVEA 236 (356)
Q Consensus 184 ~L~E~rqrh~r~ll~avE~~~-----------~~rLReKEeEIera~rrn~ELEERlrql~~E~ 236 (356)
.+|..|+.+....+.++-..+ +..|+..-+=|..+..++.+|++.+.+|..|.
T Consensus 7 ~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 7 EMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777666665532 23344333444444444444444444444443
No 157
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.36 E-value=4.6e+02 Score=26.52 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=9.3
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 018409 215 VEKATRRNAELEARAAQL 232 (356)
Q Consensus 215 Iera~rrn~ELEERlrql 232 (356)
++.+.....+||+..+.+
T Consensus 141 ~n~~~~~~~~~e~~~~~i 158 (464)
T 1m1j_B 141 DIILSEYNTEMELHYNYI 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334455555666555444
No 158
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.36 E-value=1.9e+02 Score=21.95 Aligned_cols=10 Identities=40% Similarity=0.431 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 018409 188 KRQRHYRALL 197 (356)
Q Consensus 188 ~rqrh~r~ll 197 (356)
+|+.++|+--
T Consensus 11 kR~~qNR~AQ 20 (70)
T 1gd2_E 11 KRKAQNRAAQ 20 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 159
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=28.37 E-value=2.5e+02 Score=23.20 Aligned_cols=52 Identities=31% Similarity=0.319 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 209 REKEAEVEKATRRNAELEARAAQLSV----EAQVWQAKARAQEATAASLQAQLQQA 260 (356)
Q Consensus 209 ReKEeEIera~rrn~ELEERlrql~~----E~QaWq~~A~~nEA~a~~Lra~LqQ~ 260 (356)
|+..+++++......+||+.+..-.. +.+.-...+...|+....|+...-|+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555788888888888887666655 34556677777777777766555553
No 160
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.29 E-value=20 Score=31.37 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=13.3
Q ss_pred CCCCCCCccccCceEEE
Q 018409 337 VQACPLCFNVRDSSVEV 353 (356)
Q Consensus 337 l~~CPvCr~~i~~sV~V 353 (356)
-..||+|..++..+..+
T Consensus 153 p~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 153 PEYCPVCGAPKEKFVVF 169 (170)
T ss_dssp CSBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCCHHHceec
Confidence 35999999988876654
No 161
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.95 E-value=2.7e+02 Score=24.23 Aligned_cols=7 Identities=14% Similarity=0.520 Sum_probs=0.0
Q ss_pred hhHHHHH
Q 018409 165 RQRDELD 171 (356)
Q Consensus 165 qQ~~EID 171 (356)
+++++|+
T Consensus 35 ~~Rd~~E 41 (152)
T 3a7p_A 35 TDRNDKE 41 (152)
T ss_dssp -------
T ss_pred HHhhhHH
Confidence 3444443
No 162
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=27.92 E-value=1.1e+02 Score=19.93 Aligned_cols=27 Identities=41% Similarity=0.446 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 210 EKEAEVEKATRRNAELEARAAQLSVEA 236 (356)
Q Consensus 210 eKEeEIera~rrn~ELEERlrql~~E~ 236 (356)
+.|.|+..+...|-.||..+.||.-|+
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 345567777777888888888877664
No 163
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=27.43 E-value=1.3e+02 Score=22.45 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 172 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKAT 219 (356)
Q Consensus 172 ~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~ 219 (356)
..+..|..-++..|.++|+.---.=|..++ .-|||.+.||.+..
T Consensus 12 dpL~EQi~~I~~yI~qAk~~~R~DEV~~Le----~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLT----ENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHH----HHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHcCChHHHHHHH----HHHHHHHHHHHHHh
Confidence 367788888888888888765444455555 44777777776543
No 164
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.16 E-value=1.2e+02 Score=21.79 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=14.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 213 AEVEKATRRNAELEARAAQLSVEAQV 238 (356)
Q Consensus 213 eEIera~rrn~ELEERlrql~~E~Qa 238 (356)
.|++.+...|.+|..++..|..+.+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666555555443
No 165
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.99 E-value=1.8e+02 Score=21.16 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 018409 203 SIARLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQ 258 (356)
Q Consensus 203 ~~~~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~Lq 258 (356)
.++.|-|+|-- .+..+|+.+++.|..|+.........-+..+..|+.-|.
T Consensus 12 ~AA~R~R~KKk------~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 12 TAATRYRQKKR------AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555432 235678888888888888888777777777777765443
No 166
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.56 E-value=47 Score=25.25 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=23.9
Q ss_pred cccccccccccceE-EeCCCCcccchhhHhh------CCCCCCCccccCc
Q 018409 307 PACKGCRKRVASVV-LLPCRHLCVCTECDRV------VQACPLCFNVRDS 349 (356)
Q Consensus 307 ~~C~vC~~~~~~vl-LlPCrHlclC~~C~~~------l~~CPvCr~~i~~ 349 (356)
..|.||++--..-. ..-|+|. +=..|... ...||+|+.....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 35666665432211 1156666 44566542 2589999987654
No 167
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=26.37 E-value=3.4e+02 Score=23.97 Aligned_cols=33 Identities=21% Similarity=0.468 Sum_probs=24.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHH
Q 018409 158 DLASPIKRQRDELDQFLQAQGE---QLRRALAEKRQ 190 (356)
Q Consensus 158 ~l~~~l~qQ~~EID~~i~~q~E---rLR~~L~E~rq 190 (356)
+=..+|++|-.|+...++.+.| |||+...|.++
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k 41 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSK 41 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3457799999999999999866 78877777754
No 168
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=25.94 E-value=89 Score=25.58 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 018409 216 EKATRRNAELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 216 era~rrn~ELEERlrql~~E~QaWq 240 (356)
++..+++..|.+++.+|..|...|+
T Consensus 92 ~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 92 EKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455667777788888888775
No 169
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.87 E-value=93 Score=23.63 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018409 201 EESIARLLREKEAEVEKA 218 (356)
Q Consensus 201 E~~~~~rLReKEeEIera 218 (356)
++.....|+.|++-|..+
T Consensus 13 ~e~~~~~i~~Kde~I~eL 30 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKEL 30 (67)
T ss_dssp ----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHH
Confidence 334444455555555333
No 170
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=25.74 E-value=19 Score=32.28 Aligned_cols=15 Identities=33% Similarity=1.028 Sum_probs=12.5
Q ss_pred CCCCCCccccCceEE
Q 018409 338 QACPLCFNVRDSSVE 352 (356)
Q Consensus 338 ~~CPvCr~~i~~sV~ 352 (356)
..||+|..++..+..
T Consensus 187 ~~CP~C~~~k~~F~~ 201 (202)
T 1yuz_A 187 EKCPICFRPKDTFTA 201 (202)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CCCCCCCCChHHhee
Confidence 699999999877654
No 171
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.65 E-value=2.2e+02 Score=22.58 Aligned_cols=51 Identities=12% Similarity=0.258 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHHHHHHH
Q 018409 212 EAEVEKATRRNAELEARAAQLSVEAQV--------WQAKARAQEATAASLQAQLQQAIM 262 (356)
Q Consensus 212 EeEIera~rrn~ELEERlrql~~E~Qa--------Wq~~A~~nEA~a~~Lra~LqQ~l~ 262 (356)
...|..+.+..-|.+|-|+|+..|++. ...+.+...+..+.|+..|..+..
T Consensus 37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 37 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555556667777888887754 223334444445556666666544
No 172
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.12 E-value=2.5e+02 Score=22.01 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHhH------HHHHH-HHHHHHHHHH
Q 018409 211 KEAEVEKATRRNAELEARAAQLSVEAQVW----QAKARAQE------ATAAS-LQAQLQQAIM 262 (356)
Q Consensus 211 KEeEIera~rrn~ELEERlrql~~E~QaW----q~~A~~nE------A~a~~-Lra~LqQ~l~ 262 (356)
|..-|..+.+..-|.+|-|+|+..|.+.- ..++.++. +.++. |+..|..+..
T Consensus 32 Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 32 RNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445555556667777778888887776 34444332 33455 6666666543
No 173
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.93 E-value=1.8e+02 Score=32.33 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 208 LREKEAEVEKATRRNAELEARAAQLSVEA 236 (356)
Q Consensus 208 LReKEeEIera~rrn~ELEERlrql~~E~ 236 (356)
+.+++++++++..+..+|+++++.+..+.
T Consensus 908 l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 908 YAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554444433
No 174
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.55 E-value=2.9e+02 Score=22.56 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=10.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 018409 214 EVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 214 EIera~rrn~ELEERlrql~~E 235 (356)
++..+..+..+||+-+.++..+
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e 97 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQD 97 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH
Confidence 3444444444455444444443
No 175
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.43 E-value=1.4e+02 Score=27.28 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 168 DELDQFLQAQGEQLRRALAEKRQR 191 (356)
Q Consensus 168 ~EID~~i~~q~ErLR~~L~E~rqr 191 (356)
.||+.+ ....+.|...+.+.+.+
T Consensus 59 ~e~~~l-~~~l~~l~~e~~el~d~ 81 (213)
T 4ani_A 59 EELAAA-KAQIAELEAKLSEMEHR 81 (213)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHH
Confidence 466553 44556666666555543
No 176
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=23.59 E-value=35 Score=24.46 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=10.2
Q ss_pred CCCCCccccCceEEE
Q 018409 339 ACPLCFNVRDSSVEV 353 (356)
Q Consensus 339 ~CPvCr~~i~~sV~V 353 (356)
.||+|...+..+..+
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 577777777666553
No 177
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=23.58 E-value=29 Score=31.87 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHH
Q 018409 164 KRQRDELDQFLQAQGE 179 (356)
Q Consensus 164 ~qQ~~EID~~i~~q~E 179 (356)
..|...|++++..|.+
T Consensus 44 ~e~~~li~~lv~a~~~ 59 (283)
T 3ipq_A 44 PEQLGMIEKLVAAQQQ 59 (283)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567789999998853
No 178
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=23.49 E-value=1.2e+02 Score=25.92 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 018409 251 ASLQAQLQQ 259 (356)
Q Consensus 251 ~~Lra~LqQ 259 (356)
..|...|..
T Consensus 63 ~~Le~~L~~ 71 (158)
T 1grj_A 63 KDIEAKLSN 71 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 334444443
No 179
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=23.41 E-value=32 Score=24.66 Aligned_cols=14 Identities=36% Similarity=0.793 Sum_probs=8.5
Q ss_pred CCCCCccccCceEE
Q 018409 339 ACPLCFNVRDSSVE 352 (356)
Q Consensus 339 ~CPvCr~~i~~sV~ 352 (356)
.||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 56666666655543
No 180
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=23.11 E-value=3.9e+02 Score=24.40 Aligned_cols=52 Identities=27% Similarity=0.389 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 018409 172 QFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRRNAELEARAAQL 232 (356)
Q Consensus 172 ~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rrn~ELEERlrql 232 (356)
.|-+.=.|+-|.+|.+.-. -+..|-..|| .|++||......|.+|.+-+.++
T Consensus 97 ~YWk~lAE~RR~AL~eaLe-EN~~Lh~~ie--------~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 97 QYWKEVAEKRRKALYEALK-ENEKLHKEIE--------QKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp THHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667777888777654 2334444444 68899999988888887766433
No 181
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=22.63 E-value=94 Score=26.40 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 018409 253 LQAQLQQ 259 (356)
Q Consensus 253 Lra~LqQ 259 (356)
|...|..
T Consensus 65 L~~~L~~ 71 (156)
T 2f23_A 65 LEDILSR 71 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3333333
No 182
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=22.60 E-value=34 Score=24.76 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=10.9
Q ss_pred CCCCCccccCceEEE
Q 018409 339 ACPLCFNVRDSSVEV 353 (356)
Q Consensus 339 ~CPvCr~~i~~sV~V 353 (356)
.||+|...+..+..+
T Consensus 38 ~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCTTTCCCGGGEEEC
T ss_pred cCCCCCCCHHHceec
Confidence 688888877776654
No 183
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=22.51 E-value=2.7e+02 Score=28.31 Aligned_cols=101 Identities=9% Similarity=0.159 Sum_probs=51.6
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH-
Q 018409 156 SDDLASPIKRQRDELDQFLQAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEKATRR-NAELEARAAQLS- 233 (356)
Q Consensus 156 ~d~l~~~l~qQ~~EID~~i~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIera~rr-n~ELEERlrql~- 233 (356)
+=+|+..|-+|...||.=|+.=...|. .|+ ..-.-...++.+|......+=+.+..- +.+.++ ..+|||.++-..
T Consensus 79 tCglad~L~kye~~V~~dl~~Le~~l~-~is-n~Ts~a~~~v~~ik~s~~~~q~~~~~n-~~~~~~s~~mle~~~~~~~~ 155 (461)
T 3ghg_B 79 GCQLQEALLQQERPIRNSVDELNNNVE-AVS-QTSSSSFQYMYLLKDLWQKRQKQVKDN-ENVVNEYSSELEKHQLYIDE 155 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHTHHHHHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHTHHHH
T ss_pred cchHHHHHHhcccchhhHHHHHHHHHH-HHH-hhhHHHHHHHHHHHHHhccccCCCCcc-hhHHHHHHHHHHHHHHHHHh
Confidence 347788888888888877654322222 121 223344556666665555554444433 334333 467777665543
Q ss_pred -----HHH--HHHHHHHHHhHHHHHHHHHHHHH
Q 018409 234 -----VEA--QVWQAKARAQEATAASLQAQLQQ 259 (356)
Q Consensus 234 -----~E~--QaWq~~A~~nEA~a~~Lra~LqQ 259 (356)
.|. +.-+.+-.++...+..|+..+.+
T Consensus 156 ~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~~~~ 188 (461)
T 3ghg_B 156 TVNSNIPTNLRVLRSILENLRSKIQKLESDVSA 188 (461)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122 22334444444445544444433
No 184
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=22.07 E-value=41 Score=26.46 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.4
Q ss_pred CCCCCccccCceEEE
Q 018409 339 ACPLCFNVRDSSVEV 353 (356)
Q Consensus 339 ~CPvCr~~i~~sV~V 353 (356)
.||+|..++..+..|
T Consensus 62 ~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 62 SCPDCGAAKSDFEMV 76 (81)
T ss_dssp CCTTTCCCGGGEEEE
T ss_pred cCCCCCCCHHHcEEc
Confidence 799999999988876
No 185
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.04 E-value=32 Score=24.98 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=8.8
Q ss_pred CCCCCccccCceEE
Q 018409 339 ACPLCFNVRDSSVE 352 (356)
Q Consensus 339 ~CPvCr~~i~~sV~ 352 (356)
.||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (54)
T 4rxn_A 38 VCPLCGVGKDEFEE 51 (54)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHceE
Confidence 57777766665544
No 186
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=22.02 E-value=8.4e+02 Score=27.02 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018409 223 AELEARAAQLSVEAQVWQ 240 (356)
Q Consensus 223 ~ELEERlrql~~E~QaWq 240 (356)
.+|++++..|..|++.-+
T Consensus 1019 ~~L~~kv~~L~~e~~~L~ 1036 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLK 1036 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555544443
No 187
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=21.88 E-value=2.7e+02 Score=21.25 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 018409 212 EAEVEKATRRNAELEARAAQLSVEA 236 (356)
Q Consensus 212 EeEIera~rrn~ELEERlrql~~E~ 236 (356)
+.++..+..+...||+-+.++..|-
T Consensus 25 ~~~~~~~q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666667777666666544
No 188
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.87 E-value=3.2e+02 Score=22.16 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQAQLQQAIMS 263 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lra~LqQ~l~~ 263 (356)
.-||++|++..-.++-.+.|.+-|+.-.+-.+.|+..-++-+..+..|+.+|+.+.-+
T Consensus 32 ~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 32 DSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999998899998888888889999999999999999999999887644
No 189
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.54 E-value=1.4e+02 Score=23.07 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=24.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 018409 219 TRRNAELEARAAQLSVEAQVWQAKARAQEATAASLQ 254 (356)
Q Consensus 219 ~rrn~ELEERlrql~~E~QaWq~~A~~nEA~a~~Lr 254 (356)
..+..+++.++..|..||..-+.....-+..+..|+
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567888999999999887766554444444444
No 190
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.97 E-value=24 Score=31.14 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=12.1
Q ss_pred CCCCCCccccCceEE
Q 018409 338 QACPLCFNVRDSSVE 352 (356)
Q Consensus 338 ~~CPvCr~~i~~sV~ 352 (356)
..||+|..++..+..
T Consensus 172 ~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 172 ELCPACAHPKAHFEL 186 (191)
T ss_dssp SBCTTTCCBGGGEEE
T ss_pred CCCCCCcCCHHHHHh
Confidence 499999999877654
No 191
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=20.68 E-value=1.5e+02 Score=21.11 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018409 175 QAQGEQLRRALAEKRQRHYRALLGAAEESIARLLREKEAEVEK 217 (356)
Q Consensus 175 ~~q~ErLR~~L~E~rqrh~r~ll~avE~~~~~rLReKEeEIer 217 (356)
..|..-++..|.++|+..--.=|++++ +-|||.+.||++
T Consensus 7 ~EQ~~~I~~~I~qAk~~rRfdEV~~L~----~NL~EL~~E~~~ 45 (48)
T 3v1a_A 7 AQQIKNIHSFIHQAKAAGRMDEVRTLQ----ENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHH----HHHHHHHHHHHh
Confidence 345555666666666544444444444 446777777754
No 192
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=20.65 E-value=2.5e+02 Score=20.50 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018409 206 RLLREKEAEVEKATRRNAELEARAAQLSVE 235 (356)
Q Consensus 206 ~rLReKEeEIera~rrn~ELEERlrql~~E 235 (356)
.++.+.+.+++.....|.+|+..+.+|..+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777778888888777776554
No 193
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=20.12 E-value=2.8e+02 Score=25.01 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 018409 211 KEAEVEKATRRNAELEARAAQLSVEAQVWQAKARAQEAT 249 (356)
Q Consensus 211 KEeEIera~rrn~ELEERlrql~~E~QaWq~~A~~nEA~ 249 (356)
|.+=|+.+.++...|.+--..|..|.++|-.+-..-|+.
T Consensus 17 k~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~ 55 (190)
T 3thf_A 17 MDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAK 55 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334466677777777777777777777777665555554
Done!