BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018410
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 91/174 (52%), Gaps = 21/174 (12%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
+I MPSLSPTM+EGNI +WLKKEG+ VS G+ LCE+ETDKA V ++ ++G LAKIV +
Sbjct: 5 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 64
Query: 180 GSKEIKVGEVIAITVEEEED-----IPKFKDYSPSVSDAGXXXXXXXXXXXXXXXXXXXX 234
GSK I++G +I + VEE ED IPK P VS
Sbjct: 65 GSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKP------------SEPRPSPEP 112
Query: 235 XISTXXXXXXXXXXXXXXDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKAD 288
IS R SP ARN+ E+H++ S TGP G+ K D
Sbjct: 113 QISIPVKKEHIPGTL----RFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 162
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 74/100 (74%), Gaps = 4/100 (4%)
Query: 108 GFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECM 167
G S SG Q++ +PSLSPTMQ G IARW KKEGDK++ G+++ EVETDKATV E +
Sbjct: 1 GSSGSSG----QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESL 56
Query: 168 EEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYS 207
EE Y+AKI+ +G++++ +G +I ITV + EDI FK+Y+
Sbjct: 57 EECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYT 96
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 106 bits (264), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/99 (48%), Positives = 70/99 (70%)
Query: 111 SDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEG 170
S+ PPH ++ +P+LSPTM G + RW KK G+K+S G++L E+ETDKAT+ E EEG
Sbjct: 2 SNMSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEG 61
Query: 171 YLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPS 209
YLAKI+ +G++++ +G + I VE+E DI F DY P+
Sbjct: 62 YLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPT 100
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 72/106 (67%)
Query: 104 HLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVE 163
L+ + S PPH ++ +P+LSPTM G + RW KK G+K+S G++L E+ETDKAT+
Sbjct: 13 RLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIG 72
Query: 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPS 209
E EEGYLAKI+ +G++++ +G + I VE+E DI F DY P+
Sbjct: 73 FEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPT 118
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 4/92 (4%)
Query: 108 GFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECM 167
G S SG+ +I MPSLSPTM+EGNI +WLKKEG+ VS G+ LCE+ETDKA V ++
Sbjct: 1 GSSGSSGI----KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDAS 56
Query: 168 EEGYLAKIVKGDGSKEIKVGEVIAITVEEEED 199
++G LAKIV +GSK I++G +I + VEE ED
Sbjct: 57 DDGILAKIVVEEGSKNIRLGSLIGLIVEEGED 88
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 93.6 bits (231), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 62/85 (72%)
Query: 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI 175
PPH ++ +P+LSPTM G + RW KK G+K+S G++L E+ETD AT+ E EEGYLAKI
Sbjct: 3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKI 62
Query: 176 VKGDGSKEIKVGEVIAITVEEEEDI 200
+ +G++++ +G + I VE+E DI
Sbjct: 63 LVPEGTRDVPLGTPLCIIVEKEADI 87
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 106/243 (43%), Gaps = 17/243 (6%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
E +P + + EG I +W K GD+V+ +VLCEV+ DKA VE+ +G + +I+ +
Sbjct: 4 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63
Query: 180 GSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGXXXXXXXXXXXXXXXXXXXXXISTX 239
G+ VG+ + IT+ D P +++ ++ G +
Sbjct: 64 GTVA-TVGQTL-ITL----DAPGYEN----MTFKGQEQEEAKKEEKTETVSKEEKVDAVA 113
Query: 240 XXXXXXXXXXXXXDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKE 299
R+ A P R A E V + ++GTG NG ++K DI+ +LA K
Sbjct: 114 PNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKP 173
Query: 300 VPAKAPKGKDVAAPALDYV--DIPHSQ-----IRKITASRLLFSKQTIPHYYLTVDICVD 352
PA A + AA + P ++ IR+ A ++ SK T PH L + V
Sbjct: 174 APAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVT 233
Query: 353 NLM 355
L+
Sbjct: 234 KLV 236
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
Query: 301 PAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDI 349
P AP P + DIP S IR++ A RL+ SKQTIPHYYL++D+
Sbjct: 2 PGMAP------VPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDV 44
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
E +P + + EG I +W K GD+V+ +VLCEV+ DKA VE+ +G + +I+ +
Sbjct: 3 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 62
Query: 180 GS 181
G+
Sbjct: 63 GT 64
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
+I +P L ++ + +A W KK GD V EVL E+ETDK +E+ +G L +++ +
Sbjct: 4 DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63
Query: 180 GS 181
G+
Sbjct: 64 GT 65
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
+I P+ ++ +G +A W KK G+ V E++ ++ETDK +E+ +G +A+IVK +
Sbjct: 3 DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62
Query: 180 G 180
G
Sbjct: 63 G 63
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
E +P + + EG I RW KEGD V + L EV TDK TV++ G + KI+ +
Sbjct: 3 EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62
Query: 180 G 180
G
Sbjct: 63 G 63
>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|F Chain F, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 58
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKE 299
+ A+P RNLA E+N+ LS + G+G +G I+K DI +YL + E
Sbjct: 7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTLE 52
>pdb|1W4I|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 62
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292
A P AR LA+E + LS +KGTGP G+I D++ Y
Sbjct: 7 AMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRY 42
>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of
Dihydrolipoamide Branched Chaintransacylase
Length = 70
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASR-GKEVPAKAP 305
+ A+P R LA E+N+ LS + G+G +G I+K DI +YL + G +P P
Sbjct: 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSGP 67
>pdb|2CYU|A Chain A, Nmr Structure Of A Downhill Folding Protein
Length = 40
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 3 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 39
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd)
Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid
Dehydrogenase
Length = 58
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKE 299
+ A+P R LA E+N+ LS + G+G +G I+K DI +YL + E
Sbjct: 7 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTLE 52
>pdb|1BAL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of (Escherichia Coli)
pdb|1BBL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of Escherichia Coli
Length = 51
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 13 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 49
>pdb|1W4H|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 9 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 45
>pdb|2BTG|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|2BTH|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 47
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 9 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKWLA 45
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI 175
++E + W KEGD VS + +CEV++DKA+V + +G + K+
Sbjct: 16 IREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
>pdb|1W3D|A Chain A, Nmr Structure Of The Peripheral-Subunit Binding Domain Of
Bacillus Stearothermophilus E2p
Length = 55
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 12 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 53
>pdb|1W4G|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Folding Transitions
Length = 47
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 5 RVIAMPSVRKWAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 45
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292
+ A P AR LA+E + S +KGTGP G+I D++ +
Sbjct: 5 VAAMPAARRLAKELGIDASKVKGTGPGGVITVEDVKRW 42
>pdb|1W85|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 49
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46
>pdb|1W4E|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4F|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 5 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAWLA 45
>pdb|2PDD|A Chain A, The High Resolution Structure Of The Peripheral Subunit-
Binding Domain Of Dihydrolipoamide Acetyltransferase
From The Pyruvate Dehydrogenase Multienzyme Complex Of
Bacillus Stearothermophilus
Length = 43
Score = 35.8 bits (81), Expect = 0.033, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 1 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 40
>pdb|2WXC|A Chain A, The Folding Mechanism Of Bbl: Plasticity Of Transition-
State Structure Observed Within An Ultrafast Folding
Protein Family
Length = 47
Score = 35.8 bits (81), Expect = 0.036, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
SP R L E N+ S+IKGTG G + + D+E +LA
Sbjct: 9 SPAIRRLLAEWNLDASAIKGTGVGGRLTREDVEKHLA 45
>pdb|1EBD|C Chain C, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 41
Score = 35.8 bits (81), Expect = 0.036, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 2 AMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 39
>pdb|2PDE|A Chain A, The High Resolution Structure Of The Peripheral
Subunit-Binding Domain Of Dihydrolipoamide
Acetyltransferase From The Pyruvate Dehydrogenase
Multienzyme Complex Of Bacillus Stearothermophilus
Length = 43
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 3 AMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 40
>pdb|2F5Z|K Chain K, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|L Chain L, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|M Chain M, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|N Chain N, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|O Chain O, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F60|K Chain K, Crystal Structure Of The Dihydrolipoamide Dehydrogenase
(e3)-binding Domain Of Human E3-binding Protein
Length = 64
Score = 34.3 bits (77), Expect = 0.098, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKAD 288
R SP ARN+ E+H++ S TGP G+ K D
Sbjct: 9 RFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 43
>pdb|2EQ9|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|I Chain I, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|L Chain L, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 41
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292
+ A P AR LA E + + + G+GP G + D+ Y
Sbjct: 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAY 38
>pdb|2EQ7|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
Length = 40
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 256 FASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 293
A P A L +E VS + ++GTG G I+K D+ +L
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 319 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355
+IP + +RK A + SKQ IPH ++ V++ L+
Sbjct: 20 EIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLV 56
>pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
Length = 318
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 33/59 (55%)
Query: 123 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGS 181
M SL E ++ ++ ++ +++ E +CE++ D V ++ ++ ++ + +GDG+
Sbjct: 79 MLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGT 137
>pdb|2EQ8|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
Length = 40
Score = 30.0 bits (66), Expect = 2.2, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADI 289
A+P R LA E V L+ ++GTG G I + D+
Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDV 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,055,233
Number of Sequences: 62578
Number of extensions: 343360
Number of successful extensions: 679
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 43
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)