Query 018410
Match_columns 356
No_of_seqs 266 out of 1876
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018410.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018410hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02744 dihydrolipoyllysine-r 100.0 1.2E-68 2.5E-73 551.2 27.0 344 2-356 1-348 (539)
2 KOG0557 Dihydrolipoamide acety 100.0 9.5E-50 2.1E-54 397.1 20.8 241 114-355 34-280 (470)
3 COG0508 AceF Pyruvate/2-oxoglu 100.0 5.2E-42 1.1E-46 344.8 18.9 212 118-355 2-213 (404)
4 TIGR02927 SucB_Actino 2-oxoglu 100.0 6.7E-41 1.5E-45 350.7 24.1 239 117-356 134-392 (590)
5 PRK05704 dihydrolipoamide succ 100.0 1.3E-40 2.8E-45 335.0 22.6 211 119-355 3-216 (407)
6 TIGR01347 sucB 2-oxoglutarate 100.0 3.6E-40 7.7E-45 331.4 22.6 211 119-355 1-212 (403)
7 TIGR01348 PDHac_trf_long pyruv 100.0 1.2E-38 2.5E-43 331.3 23.2 229 119-356 117-357 (546)
8 TIGR01349 PDHac_trf_mito pyruv 100.0 4.1E-38 8.8E-43 319.3 23.6 235 121-356 2-246 (435)
9 PRK11855 dihydrolipoamide acet 100.0 3.5E-37 7.6E-42 320.4 22.9 224 118-355 119-357 (547)
10 PRK11854 aceF pyruvate dehydro 100.0 3.1E-37 6.8E-42 325.5 22.2 222 118-355 206-441 (633)
11 PRK11856 branched-chain alpha- 100.0 1.4E-36 3E-41 305.8 24.3 222 119-355 3-226 (411)
12 PLN02528 2-oxoisovalerate dehy 100.0 1.5E-36 3.2E-41 306.5 21.7 209 121-355 1-222 (416)
13 KOG0558 Dihydrolipoamide trans 100.0 2.3E-31 5E-36 257.2 12.1 208 118-356 64-281 (474)
14 PTZ00144 dihydrolipoamide succ 100.0 3.7E-30 8E-35 259.4 18.5 89 99-195 32-120 (418)
15 PLN02226 2-oxoglutarate dehydr 100.0 8.3E-30 1.8E-34 258.9 20.3 193 105-355 80-272 (463)
16 KOG0559 Dihydrolipoamide succi 99.9 4.6E-28 1E-32 235.2 9.9 92 97-194 56-147 (457)
17 PRK14843 dihydrolipoamide acet 99.8 4E-20 8.6E-25 183.2 8.1 103 253-355 47-156 (347)
18 PRK11857 dihydrolipoamide acet 99.8 5.9E-20 1.3E-24 179.2 8.3 101 255-355 2-114 (306)
19 PRK14875 acetoin dehydrogenase 99.8 8E-19 1.7E-23 170.2 12.1 76 119-195 3-78 (371)
20 PF00364 Biotin_lipoyl: Biotin 99.8 7.7E-19 1.7E-23 137.3 8.6 74 119-193 1-74 (74)
21 PRK06748 hypothetical protein; 99.7 1.4E-16 3.1E-21 127.6 9.9 61 132-193 12-73 (83)
22 PRK11892 pyruvate dehydrogenas 99.6 3.1E-15 6.7E-20 153.5 15.9 81 119-199 3-83 (464)
23 PRK05889 putative acetyl-CoA c 99.6 2.1E-14 4.7E-19 111.1 9.5 61 132-193 10-70 (71)
24 cd06663 Biotinyl_lipoyl_domain 99.5 5.2E-14 1.1E-18 108.5 10.0 72 121-193 2-73 (73)
25 PRK11854 aceF pyruvate dehydro 99.5 8.3E-14 1.8E-18 148.0 11.5 74 119-195 3-76 (633)
26 TIGR02927 SucB_Actino 2-oxoglu 99.5 1E-13 2.2E-18 146.2 11.1 76 119-195 3-78 (590)
27 PRK08225 acetyl-CoA carboxylas 99.5 3.9E-13 8.5E-18 103.5 9.0 60 133-193 10-69 (70)
28 COG0511 AccB Biotin carboxyl c 99.4 2E-13 4.4E-18 119.4 8.2 61 132-193 78-138 (140)
29 PF02817 E3_binding: e3 bindin 99.4 1.6E-13 3.4E-18 95.2 4.1 38 254-291 2-39 (39)
30 PRK11855 dihydrolipoamide acet 99.4 2.4E-12 5.1E-17 134.8 11.2 75 119-195 3-77 (547)
31 PRK06549 acetyl-CoA carboxylas 99.3 3.8E-12 8.3E-17 110.2 9.4 62 131-193 68-129 (130)
32 TIGR01348 PDHac_trf_long pyruv 99.3 4.9E-12 1.1E-16 132.4 10.8 73 120-194 2-74 (546)
33 PRK07051 hypothetical protein; 99.3 1.8E-11 3.9E-16 97.1 10.3 68 119-193 4-78 (80)
34 PRK05641 putative acetyl-CoA c 99.3 9E-12 2E-16 110.7 9.0 62 131-193 91-152 (153)
35 cd06850 biotinyl_domain The bi 99.3 2E-11 4.2E-16 91.2 9.3 62 131-193 6-67 (67)
36 cd06849 lipoyl_domain Lipoyl d 99.2 9.4E-11 2E-15 86.7 10.8 73 120-193 2-74 (74)
37 PLN02983 biotin carboxyl carri 99.2 2E-11 4.2E-16 116.3 8.7 61 132-193 205-272 (274)
38 TIGR00531 BCCP acetyl-CoA carb 99.2 2.5E-11 5.4E-16 108.1 8.4 56 137-193 100-155 (156)
39 PRK06302 acetyl-CoA carboxylas 99.2 5.8E-11 1.3E-15 105.6 8.6 56 137-193 99-154 (155)
40 PRK14042 pyruvate carboxylase 99.1 1.4E-10 3.1E-15 122.3 10.5 60 133-193 534-593 (596)
41 TIGR02712 urea_carbox urea car 99.1 3.4E-10 7.3E-15 127.9 9.6 62 131-193 1139-1200(1201)
42 TIGR01108 oadA oxaloacetate de 99.0 5.5E-10 1.2E-14 117.8 7.8 58 132-190 525-582 (582)
43 PRK14040 oxaloacetate decarbox 99.0 1.4E-09 3E-14 115.0 9.6 62 131-193 531-592 (593)
44 TIGR01235 pyruv_carbox pyruvat 99.0 1.7E-09 3.8E-14 121.4 9.3 61 132-193 1082-1142(1143)
45 PRK09282 pyruvate carboxylase 98.8 9E-09 2E-13 108.9 9.1 62 131-193 529-590 (592)
46 PRK12999 pyruvate carboxylase; 98.7 2.9E-08 6.3E-13 112.0 9.2 60 133-193 1085-1144(1146)
47 COG4770 Acetyl/propionyl-CoA c 98.6 8.2E-08 1.8E-12 99.5 7.6 61 132-193 583-643 (645)
48 COG1038 PycA Pyruvate carboxyl 98.4 2.8E-07 6.1E-12 98.6 6.3 60 133-193 1088-1147(1149)
49 cd06848 GCS_H Glycine cleavage 98.4 8.4E-07 1.8E-11 72.6 6.1 61 120-181 17-78 (96)
50 KOG0369 Pyruvate carboxylase [ 98.1 5.4E-06 1.2E-10 87.6 7.1 60 133-193 1115-1174(1176)
51 TIGR03077 not_gcvH glycine cle 98.0 7.8E-06 1.7E-10 69.1 5.5 39 141-179 39-77 (110)
52 PRK00624 glycine cleavage syst 98.0 1.7E-05 3.7E-10 67.5 6.4 36 141-176 41-76 (114)
53 KOG0238 3-Methylcrotonyl-CoA c 97.9 5.6E-05 1.2E-09 78.1 8.9 60 133-193 610-669 (670)
54 PRK13380 glycine cleavage syst 97.8 3.4E-05 7.3E-10 68.1 6.1 46 133-178 44-90 (144)
55 TIGR00998 8a0101 efflux pump m 97.8 6.7E-05 1.4E-09 73.1 8.4 35 162-197 205-239 (334)
56 PRK09783 copper/silver efflux 97.8 0.0001 2.2E-09 75.0 9.5 66 131-197 130-244 (409)
57 PRK14843 dihydrolipoamide acet 97.8 1.5E-05 3.2E-10 79.7 3.2 42 253-294 4-45 (347)
58 KOG0368 Acetyl-CoA carboxylase 97.8 4.6E-05 9.9E-10 86.0 7.0 65 129-195 690-754 (2196)
59 TIGR01730 RND_mfp RND family e 97.7 5.9E-05 1.3E-09 72.3 6.4 65 131-196 33-168 (322)
60 PRK10559 p-hydroxybenzoic acid 97.7 0.0001 2.2E-09 72.3 7.8 65 131-196 54-188 (310)
61 PRK10476 multidrug resistance 97.6 0.00016 3.4E-09 71.4 7.7 35 162-197 209-243 (346)
62 PRK01202 glycine cleavage syst 97.6 0.00017 3.6E-09 62.3 6.3 40 136-176 42-81 (127)
63 TIGR00527 gcvH glycine cleavag 97.5 0.00015 3.2E-09 62.7 5.1 37 141-177 45-81 (127)
64 PRK15136 multidrug efflux syst 97.4 0.00032 7E-09 70.8 7.6 35 162-197 216-250 (390)
65 PRK03598 putative efflux pump 97.4 0.00033 7.2E-09 68.7 7.1 34 162-196 204-237 (331)
66 PRK09578 periplasmic multidrug 97.4 0.00047 1E-08 69.1 7.6 64 131-195 70-206 (385)
67 PRK15030 multidrug efflux syst 97.2 0.00093 2E-08 67.5 8.2 64 131-195 72-208 (397)
68 PRK09859 multidrug efflux syst 97.2 0.00094 2E-08 67.0 7.8 64 131-195 68-204 (385)
69 PF13533 Biotin_lipoyl_2: Biot 97.2 0.00043 9.4E-09 50.2 3.7 29 131-159 9-37 (50)
70 PF13533 Biotin_lipoyl_2: Biot 97.2 0.00097 2.1E-08 48.3 5.3 32 161-193 2-33 (50)
71 PRK11578 macrolide transporter 97.1 0.0014 3.1E-08 65.3 8.0 27 131-157 68-94 (370)
72 PF01597 GCV_H: Glycine cleava 97.1 0.0011 2.3E-08 56.9 6.0 37 140-176 39-75 (122)
73 PRK11556 multidrug efflux syst 97.0 0.0014 3E-08 66.8 7.1 64 131-195 94-230 (415)
74 PF12700 HlyD_2: HlyD family s 97.0 0.0006 1.3E-08 65.5 3.8 26 131-157 28-53 (328)
75 COG0509 GcvH Glycine cleavage 96.9 0.0012 2.6E-08 57.5 4.0 38 139-176 46-83 (131)
76 TIGR02971 heterocyst_DevB ABC 96.8 0.003 6.4E-08 61.7 7.1 32 163-196 206-237 (327)
77 PRK12784 hypothetical protein; 96.6 0.013 2.9E-07 46.5 8.0 63 131-194 12-75 (84)
78 TIGR00999 8a0102 Membrane Fusi 96.6 0.0061 1.3E-07 57.2 7.0 35 161-196 88-122 (265)
79 TIGR03309 matur_yqeB selenium- 96.3 0.015 3.2E-07 56.0 7.9 56 131-193 171-226 (256)
80 cd06253 M14_ASTE_ASPA_like_3 A 95.9 0.03 6.6E-07 54.8 8.1 58 133-193 237-297 (298)
81 PRK05889 putative acetyl-CoA c 95.9 0.016 3.5E-07 44.5 4.9 30 163-193 4-33 (71)
82 PF13375 RnfC_N: RnfC Barrel s 95.9 0.014 2.9E-07 48.7 4.7 44 133-177 39-82 (101)
83 cd06250 M14_PaAOTO_like An unc 95.8 0.031 6.7E-07 56.2 7.7 59 132-193 296-358 (359)
84 PRK08225 acetyl-CoA carboxylas 95.7 0.015 3.3E-07 44.4 4.1 26 131-156 45-70 (70)
85 cd06251 M14_ASTE_ASPA_like_1 A 95.7 0.044 9.5E-07 53.3 8.1 58 133-193 227-286 (287)
86 PF05896 NQRA: Na(+)-transloca 95.5 0.018 3.9E-07 55.5 4.9 42 136-180 41-84 (257)
87 cd06252 M14_ASTE_ASPA_like_2 A 95.2 0.084 1.8E-06 52.0 8.4 59 133-194 252-314 (316)
88 PRK06748 hypothetical protein; 94.9 0.047 1E-06 44.0 4.7 30 163-193 6-35 (83)
89 TIGR02994 ectoine_eutE ectoine 94.8 0.099 2.1E-06 52.0 7.8 58 133-193 263-324 (325)
90 COG0511 AccB Biotin carboxyl c 94.8 0.043 9.3E-07 48.1 4.7 32 161-193 70-101 (140)
91 cd06850 biotinyl_domain The bi 94.6 0.059 1.3E-06 39.6 4.4 29 164-193 2-30 (67)
92 COG1566 EmrA Multidrug resista 94.6 0.15 3.3E-06 51.3 8.5 34 163-197 210-243 (352)
93 PRK12270 kgd alpha-ketoglutara 94.4 0.13 2.7E-06 57.8 7.9 38 318-356 116-153 (1228)
94 COG3608 Predicted deacylase [G 94.3 0.13 2.7E-06 51.4 7.0 60 132-194 263-325 (331)
95 PF13437 HlyD_3: HlyD family s 94.1 0.08 1.7E-06 42.9 4.6 30 164-194 2-31 (105)
96 cd06254 M14_ASTE_ASPA_like_4 A 94.0 0.14 2.9E-06 49.8 6.6 56 132-190 230-287 (288)
97 PRK07051 hypothetical protein; 93.4 0.11 2.4E-06 41.0 4.0 26 131-156 54-79 (80)
98 PRK10476 multidrug resistance 92.9 0.19 4.1E-06 49.7 5.8 37 154-193 43-79 (346)
99 PF00529 HlyD: HlyD family sec 92.8 0.1 2.3E-06 49.5 3.6 32 162-194 2-33 (305)
100 COG1726 NqrA Na+-transporting 92.5 0.15 3.2E-06 51.4 4.2 40 137-179 42-83 (447)
101 TIGR00998 8a0101 efflux pump m 92.5 0.23 4.9E-06 48.4 5.6 32 161-193 42-73 (334)
102 TIGR01936 nqrA NADH:ubiquinone 92.5 0.2 4.4E-06 51.9 5.5 44 133-177 38-81 (447)
103 PRK06549 acetyl-CoA carboxylas 92.4 0.24 5.3E-06 43.1 5.0 32 161-193 61-92 (130)
104 TIGR02971 heterocyst_DevB ABC 92.1 0.24 5.1E-06 48.3 5.1 40 154-194 6-48 (327)
105 KOG0559 Dihydrolipoamide succi 91.9 1.8 4E-05 43.8 11.1 37 118-158 113-149 (457)
106 PRK05641 putative acetyl-CoA c 91.8 0.29 6.4E-06 43.7 4.9 31 162-193 85-115 (153)
107 PF09891 DUF2118: Uncharacteri 91.7 0.29 6.4E-06 43.7 4.8 46 131-176 87-133 (150)
108 PF00529 HlyD: HlyD family sec 91.6 0.14 3.1E-06 48.5 3.0 28 131-158 8-35 (305)
109 TIGR01730 RND_mfp RND family e 91.3 0.42 9E-06 45.7 5.9 39 154-194 20-58 (322)
110 PRK11578 macrolide transporter 91.1 0.6 1.3E-05 46.5 7.0 55 137-193 38-92 (370)
111 PF12700 HlyD_2: HlyD family s 91.1 0.43 9.2E-06 45.8 5.7 37 154-194 16-52 (328)
112 PRK05352 Na(+)-translocating N 91.1 0.33 7.2E-06 50.4 5.2 43 133-176 39-81 (448)
113 PF00364 Biotin_lipoyl: Biotin 90.9 0.3 6.5E-06 37.9 3.7 30 163-193 2-37 (74)
114 TIGR01000 bacteriocin_acc bact 90.9 0.56 1.2E-05 48.4 6.7 39 154-193 52-90 (457)
115 TIGR01945 rnfC electron transp 90.4 0.3 6.6E-06 50.3 4.2 42 134-176 41-82 (435)
116 PRK11556 multidrug efflux syst 90.3 0.68 1.5E-05 47.3 6.6 54 139-194 66-119 (415)
117 TIGR01843 type_I_hlyD type I s 90.2 0.48 1E-05 47.2 5.4 40 154-194 36-75 (423)
118 PF07831 PYNP_C: Pyrimidine nu 90.0 0.28 6.1E-06 38.6 2.8 26 133-158 31-56 (75)
119 TIGR01235 pyruv_carbox pyruvat 90.0 0.56 1.2E-05 54.0 6.3 59 133-193 1047-1105(1143)
120 cd06255 M14_ASTE_ASPA_like_5 A 89.9 0.99 2.1E-05 44.1 7.2 43 133-175 239-283 (293)
121 PRK09859 multidrug efflux syst 89.8 0.81 1.8E-05 46.0 6.6 52 140-193 41-92 (385)
122 TIGR03794 NHPM_micro_HlyD NHPM 89.7 0.62 1.4E-05 47.4 5.8 34 160-194 57-90 (421)
123 PRK05035 electron transport co 89.6 0.85 1.8E-05 49.9 7.0 43 133-176 46-88 (695)
124 PRK03598 putative efflux pump 89.5 0.52 1.1E-05 46.2 4.9 32 161-193 43-74 (331)
125 PRK09578 periplasmic multidrug 89.0 0.98 2.1E-05 45.3 6.5 53 139-193 42-94 (385)
126 PF13437 HlyD_3: HlyD family s 88.8 1.7 3.6E-05 35.1 6.6 28 131-158 6-33 (105)
127 PRK15136 multidrug efflux syst 88.7 0.66 1.4E-05 47.0 5.1 32 161-193 61-92 (390)
128 PRK10559 p-hydroxybenzoic acid 88.6 0.69 1.5E-05 45.4 5.0 32 162-194 48-79 (310)
129 TIGR01843 type_I_hlyD type I s 88.3 0.42 9.2E-06 47.6 3.4 30 131-160 50-79 (423)
130 PRK06302 acetyl-CoA carboxylas 88.1 0.86 1.9E-05 40.6 4.9 27 130-156 129-155 (155)
131 TIGR00531 BCCP acetyl-CoA carb 88.1 0.54 1.2E-05 42.0 3.5 27 130-156 130-156 (156)
132 PF04952 AstE_AspA: Succinylgl 87.7 1.4 3E-05 42.3 6.3 58 133-193 228-289 (292)
133 PLN02226 2-oxoglutarate dehydr 86.8 0.74 1.6E-05 48.1 4.2 29 130-158 140-168 (463)
134 PF02749 QRPTase_N: Quinolinat 86.8 0.63 1.4E-05 37.3 2.9 22 136-157 47-68 (88)
135 KOG3373 Glycine cleavage syste 86.7 0.44 9.6E-06 43.0 2.2 38 141-178 89-126 (172)
136 TIGR03794 NHPM_micro_HlyD NHPM 85.9 0.77 1.7E-05 46.7 3.7 27 131-157 65-91 (421)
137 PLN02983 biotin carboxyl carri 85.4 0.92 2E-05 44.1 3.7 26 131-156 248-273 (274)
138 PRK14875 acetoin dehydrogenase 85.3 1.4 3E-05 42.7 5.1 35 119-159 46-80 (371)
139 PRK15030 multidrug efflux syst 85.3 1.3 2.8E-05 44.8 5.0 39 153-193 58-96 (397)
140 COG4656 RnfC Predicted NADH:ub 84.5 1 2.2E-05 47.5 3.8 39 136-176 45-83 (529)
141 PRK09783 copper/silver efflux 84.5 2.2 4.9E-05 43.5 6.3 43 151-194 112-156 (409)
142 TIGR01000 bacteriocin_acc bact 84.4 1 2.2E-05 46.5 3.8 28 131-158 66-93 (457)
143 COG0845 AcrA Membrane-fusion p 84.0 3.1 6.8E-05 39.4 6.8 43 151-195 57-99 (372)
144 PRK09439 PTS system glucose-sp 83.6 3 6.4E-05 38.0 6.0 17 176-193 107-123 (169)
145 PRK14042 pyruvate carboxylase 82.8 1.7 3.7E-05 46.8 4.8 31 162-193 526-556 (596)
146 COG0845 AcrA Membrane-fusion p 82.5 1.3 2.9E-05 42.0 3.5 27 131-157 73-99 (372)
147 cd00210 PTS_IIA_glc PTS_IIA, P 82.2 4 8.7E-05 35.3 6.0 20 173-193 82-101 (124)
148 PF00358 PTS_EIIA_1: phosphoen 82.1 2.8 6.1E-05 36.6 5.1 17 176-193 89-105 (132)
149 PRK05305 phosphatidylserine de 81.9 3.6 7.8E-05 38.2 6.1 54 133-192 150-204 (206)
150 PRK09439 PTS system glucose-sp 81.5 3.2 6.9E-05 37.8 5.4 27 133-159 101-127 (169)
151 TIGR01108 oadA oxaloacetate de 80.9 2.2 4.7E-05 45.9 4.8 31 162-193 518-548 (582)
152 TIGR00164 PS_decarb_rel phosph 80.8 4.2 9.2E-05 37.2 6.1 52 133-190 130-181 (189)
153 TIGR00830 PTBA PTS system, glu 79.9 5.2 0.00011 34.5 5.9 20 173-193 82-101 (121)
154 PTZ00144 dihydrolipoamide succ 79.0 2.3 5E-05 43.9 4.1 38 318-355 190-227 (418)
155 cd06849 lipoyl_domain Lipoyl d 78.5 2.7 5.8E-05 30.0 3.3 25 131-155 50-74 (74)
156 PRK05704 dihydrolipoamide succ 78.4 2.6 5.7E-05 43.3 4.3 30 130-159 51-80 (407)
157 PRK14040 oxaloacetate decarbox 78.4 2.9 6.3E-05 45.1 4.8 32 161-193 524-555 (593)
158 cd06663 Biotinyl_lipoyl_domain 78.2 2.8 6.1E-05 31.7 3.4 25 131-155 49-73 (73)
159 cd00210 PTS_IIA_glc PTS_IIA, P 78.0 2 4.4E-05 37.1 2.9 27 133-159 79-105 (124)
160 TIGR01347 sucB 2-oxoglutarate 77.9 2.8 6.1E-05 43.0 4.3 30 129-158 48-77 (403)
161 PF02666 PS_Dcarbxylase: Phosp 77.6 4.5 9.8E-05 37.2 5.3 57 133-192 145-202 (202)
162 TIGR00830 PTBA PTS system, glu 76.7 2.3 4.9E-05 36.7 2.8 27 133-159 79-105 (121)
163 COG4072 Uncharacterized protei 76.6 5 0.00011 35.5 4.9 45 131-175 98-143 (161)
164 PLN02528 2-oxoisovalerate dehy 76.4 3.2 7E-05 42.7 4.3 30 130-159 47-76 (416)
165 COG2190 NagE Phosphotransferas 76.3 6 0.00013 35.6 5.4 23 170-193 86-108 (156)
166 PRK09282 pyruvate carboxylase 75.9 3.8 8.3E-05 44.1 4.9 32 161-193 522-553 (592)
167 COG2190 NagE Phosphotransferas 75.6 11 0.00023 34.1 6.8 28 133-160 86-113 (156)
168 COG0508 AceF Pyruvate/2-oxoglu 75.0 3.7 8E-05 42.1 4.3 39 118-160 43-81 (404)
169 PF00358 PTS_EIIA_1: phosphoen 74.5 1.8 3.9E-05 37.8 1.6 28 132-159 82-109 (132)
170 TIGR01995 PTS-II-ABC-beta PTS 73.6 4.7 0.0001 43.6 4.8 29 132-160 542-570 (610)
171 COG1566 EmrA Multidrug resista 72.8 5.8 0.00012 40.1 5.0 32 161-193 53-84 (352)
172 TIGR02712 urea_carbox urea car 70.4 5.5 0.00012 46.4 4.7 31 162-193 1133-1163(1201)
173 COG4770 Acetyl/propionyl-CoA c 70.1 5.6 0.00012 42.6 4.3 31 162-193 576-606 (645)
174 TIGR01349 PDHac_trf_mito pyruv 69.3 6.2 0.00013 40.9 4.4 30 130-159 48-78 (435)
175 COG0157 NadC Nicotinate-nucleo 68.1 5.2 0.00011 39.2 3.3 24 135-158 65-88 (280)
176 PRK12999 pyruvate carboxylase; 67.5 6.8 0.00015 45.4 4.7 31 162-193 1077-1107(1146)
177 PRK09824 PTS system beta-gluco 66.1 12 0.00026 40.7 6.0 27 133-159 559-585 (627)
178 TIGR02645 ARCH_P_rylase putati 65.7 12 0.00026 39.6 5.6 42 153-195 405-470 (493)
179 PRK11892 pyruvate dehydrogenas 64.6 8 0.00017 40.5 4.2 31 129-159 50-81 (464)
180 COG1155 NtpA Archaeal/vacuolar 63.8 20 0.00043 38.3 6.7 70 121-198 105-180 (588)
181 TIGR00999 8a0102 Membrane Fusi 63.3 16 0.00035 34.0 5.7 32 120-157 90-121 (265)
182 TIGR01042 V-ATPase_V1_A V-type 62.7 18 0.00039 39.0 6.4 65 121-194 106-178 (591)
183 cd06255 M14_ASTE_ASPA_like_5 A 62.6 11 0.00024 36.8 4.5 34 161-196 231-264 (293)
184 cd06253 M14_ASTE_ASPA_like_3 A 61.8 11 0.00023 37.0 4.3 34 161-196 229-262 (298)
185 PRK03934 phosphatidylserine de 61.6 14 0.00031 35.7 5.0 55 134-193 211-265 (265)
186 PF01551 Peptidase_M23: Peptid 60.6 17 0.00038 28.8 4.6 56 129-194 18-73 (96)
187 cd06254 M14_ASTE_ASPA_like_4 A 60.4 13 0.00028 36.1 4.5 36 159-196 221-256 (288)
188 PRK14698 V-type ATP synthase s 60.1 25 0.00055 40.4 7.3 67 120-195 106-179 (1017)
189 PRK08072 nicotinate-nucleotide 59.7 9.4 0.0002 37.3 3.4 22 136-157 66-87 (277)
190 KOG0369 Pyruvate carboxylase [ 59.7 7.5 0.00016 42.6 2.9 30 163-193 1108-1137(1176)
191 PRK11856 branched-chain alpha- 59.3 12 0.00027 38.0 4.4 31 130-160 51-81 (411)
192 cd01572 QPRTase Quinolinate ph 59.2 11 0.00023 36.7 3.7 25 133-157 57-81 (268)
193 cd06251 M14_ASTE_ASPA_like_1 A 58.0 15 0.00032 35.7 4.5 35 160-196 218-252 (287)
194 PRK10255 PTS system N-acetyl g 57.6 16 0.00034 40.0 5.0 28 133-160 579-606 (648)
195 PRK14844 bifunctional DNA-dire 57.1 19 0.00041 45.1 5.9 20 137-156 2423-2442(2836)
196 cd06250 M14_PaAOTO_like An unc 57.1 17 0.00038 36.6 4.9 34 162-197 290-323 (359)
197 cd01134 V_A-ATPase_A V/A-type 56.6 28 0.00062 35.5 6.3 65 121-194 38-109 (369)
198 PRK04350 thymidine phosphoryla 56.5 20 0.00044 37.9 5.4 41 154-195 398-462 (490)
199 TIGR02994 ectoine_eutE ectoine 56.5 16 0.00034 36.4 4.5 33 161-195 255-287 (325)
200 TIGR03309 matur_yqeB selenium- 56.3 15 0.00033 35.6 4.2 32 161-194 164-195 (256)
201 PRK06543 nicotinate-nucleotide 56.1 12 0.00025 36.8 3.4 23 135-157 66-88 (281)
202 COG1038 PycA Pyruvate carboxyl 55.8 9.8 0.00021 42.5 3.1 30 163-193 1081-1110(1149)
203 TIGR02643 T_phosphoryl thymidi 55.5 21 0.00046 37.2 5.3 38 157-195 335-403 (437)
204 cd06252 M14_ASTE_ASPA_like_2 A 55.4 23 0.0005 34.9 5.4 36 159-196 242-277 (316)
205 TIGR02644 Y_phosphoryl pyrimid 55.4 11 0.00024 38.9 3.2 60 135-195 307-397 (405)
206 PRK10255 PTS system N-acetyl g 55.2 23 0.00049 38.8 5.7 41 149-193 526-601 (648)
207 TIGR03327 AMP_phos AMP phospho 55.2 21 0.00045 37.9 5.3 40 155-195 408-471 (500)
208 PRK05742 nicotinate-nucleotide 55.0 13 0.00027 36.5 3.4 22 136-157 68-89 (277)
209 PRK06096 molybdenum transport 54.9 12 0.00027 36.7 3.4 22 136-157 63-84 (284)
210 PLN02744 dihydrolipoyllysine-r 54.7 13 0.00028 39.8 3.7 30 129-158 160-190 (539)
211 PRK06078 pyrimidine-nucleoside 54.2 22 0.00047 37.1 5.2 40 155-195 329-399 (434)
212 cd01573 modD_like ModD; Quinol 54.1 13 0.00028 36.1 3.4 22 136-157 58-79 (272)
213 PRK03140 phosphatidylserine de 53.7 18 0.00039 34.9 4.2 51 140-192 207-257 (259)
214 cd01568 QPRTase_NadC Quinolina 53.7 14 0.00029 35.8 3.4 24 134-157 57-80 (269)
215 PRK05820 deoA thymidine phosph 52.7 11 0.00025 39.2 2.9 27 130-156 377-403 (440)
216 TIGR02643 T_phosphoryl thymidi 52.6 11 0.00025 39.1 2.8 27 130-156 376-402 (437)
217 PRK06978 nicotinate-nucleotide 52.4 14 0.00031 36.4 3.4 22 136-157 84-105 (294)
218 PRK05820 deoA thymidine phosph 52.2 25 0.00053 36.8 5.2 38 157-195 336-404 (440)
219 PRK07428 nicotinate-nucleotide 52.1 15 0.00032 36.2 3.4 22 136-157 74-95 (288)
220 PRK09016 quinolinate phosphori 51.9 15 0.00032 36.4 3.4 22 136-157 87-108 (296)
221 PRK04192 V-type ATP synthase s 51.9 35 0.00077 36.9 6.4 55 139-196 123-180 (586)
222 PRK05848 nicotinate-nucleotide 51.8 15 0.00033 35.8 3.4 22 136-157 60-81 (273)
223 TIGR01995 PTS-II-ABC-beta PTS 51.5 30 0.00065 37.5 5.9 57 132-193 470-565 (610)
224 PLN02716 nicotinate-nucleotide 51.1 16 0.00034 36.5 3.4 22 136-157 80-101 (308)
225 PRK07896 nicotinate-nucleotide 50.8 16 0.00034 36.0 3.4 22 136-157 78-99 (289)
226 PRK09824 PTS system beta-gluco 50.6 29 0.00064 37.8 5.7 58 131-193 485-581 (627)
227 PRK06106 nicotinate-nucleotide 50.5 16 0.00035 35.8 3.4 24 134-157 70-93 (281)
228 KOG0238 3-Methylcrotonyl-CoA c 49.8 14 0.00031 39.3 3.0 29 164-193 604-632 (670)
229 TIGR02645 ARCH_P_rylase putati 49.3 16 0.00034 38.7 3.2 31 126-156 439-469 (493)
230 PRK08385 nicotinate-nucleotide 49.2 18 0.00038 35.5 3.4 22 136-157 60-81 (278)
231 PF01551 Peptidase_M23: Peptid 49.1 16 0.00034 29.0 2.6 24 135-158 52-75 (96)
232 TIGR00078 nadC nicotinate-nucl 48.9 18 0.00039 35.0 3.4 22 136-157 56-77 (265)
233 TIGR01334 modD putative molybd 48.8 18 0.00039 35.4 3.4 22 136-157 62-83 (277)
234 PRK02597 rpoC2 DNA-directed RN 48.4 55 0.0012 38.7 7.6 37 137-173 404-447 (1331)
235 TIGR02644 Y_phosphoryl pyrimid 48.0 16 0.00034 37.8 3.0 28 130-157 370-397 (405)
236 PRK04350 thymidine phosphoryla 47.8 17 0.00037 38.4 3.3 31 126-156 431-461 (490)
237 PF05896 NQRA: Na(+)-transloca 47.0 17 0.00036 35.4 2.8 33 160-193 28-60 (257)
238 PF07831 PYNP_C: Pyrimidine nu 46.9 30 0.00065 27.1 3.8 28 167-197 30-57 (75)
239 PRK12784 hypothetical protein; 46.9 28 0.00062 28.0 3.6 29 132-160 51-79 (84)
240 KOG1668 Elongation factor 1 be 46.9 11 0.00024 36.0 1.6 28 136-163 180-207 (231)
241 TIGR03327 AMP_phos AMP phospho 46.4 18 0.00039 38.3 3.2 31 126-156 440-470 (500)
242 TIGR00163 PS_decarb phosphatid 46.0 23 0.0005 33.7 3.6 48 143-192 189-236 (238)
243 COG3608 Predicted deacylase [G 45.8 36 0.00078 34.3 5.0 38 154-195 251-288 (331)
244 PRK06078 pyrimidine-nucleoside 45.3 19 0.00041 37.5 3.1 29 131-159 373-401 (434)
245 PF06898 YqfD: Putative stage 42.4 28 0.0006 35.4 3.8 24 131-154 196-226 (385)
246 PRK00044 psd phosphatidylserin 41.8 32 0.00069 33.7 4.0 58 134-194 224-286 (288)
247 cd06910 M14_ASTE_ASPA_like_7 A 41.0 47 0.001 32.0 4.9 45 140-192 226-271 (272)
248 COG0213 DeoA Thymidine phospho 40.7 53 0.0012 34.1 5.4 40 155-195 330-400 (435)
249 COG4072 Uncharacterized protei 38.7 68 0.0015 28.5 5.0 28 167-195 97-124 (161)
250 PRK11536 6-N-hydroxylaminopuri 38.3 31 0.00066 32.8 3.1 71 120-193 78-163 (223)
251 KOG0557 Dihydrolipoamide acety 38.2 28 0.00061 36.4 3.1 27 167-194 50-76 (470)
252 PF13375 RnfC_N: RnfC Barrel s 37.4 62 0.0013 26.8 4.5 46 146-193 15-61 (101)
253 TIGR01043 ATP_syn_A_arch ATP s 37.2 67 0.0014 34.8 5.7 65 121-194 104-175 (578)
254 COG4942 Membrane-bound metallo 36.4 34 0.00075 35.5 3.3 40 152-196 354-393 (420)
255 PRK08662 nicotinate phosphorib 36.3 34 0.00074 34.4 3.3 24 132-157 69-92 (343)
256 TIGR02876 spore_yqfD sporulati 36.1 54 0.0012 33.4 4.7 24 131-154 193-223 (382)
257 CHL00117 rpoC2 RNA polymerase 36.1 43 0.00093 39.8 4.4 38 137-174 405-450 (1364)
258 PRK06559 nicotinate-nucleotide 34.6 39 0.00085 33.4 3.3 24 134-157 71-96 (290)
259 PRK10871 nlpD lipoprotein NlpD 34.1 23 0.00051 35.4 1.7 20 175-195 272-291 (319)
260 COG2258 Uncharacterized protei 33.4 49 0.0011 31.2 3.6 70 121-193 76-160 (210)
261 PRK07188 nicotinate phosphorib 32.9 45 0.00099 33.7 3.5 24 134-157 71-94 (352)
262 PF02749 QRPTase_N: Quinolinat 32.4 91 0.002 24.8 4.6 21 173-194 47-67 (88)
263 KOG0368 Acetyl-CoA carboxylase 32.0 64 0.0014 38.8 4.8 50 143-193 667-716 (2196)
264 PF01333 Apocytochr_F_C: Apocy 30.8 78 0.0017 27.3 4.0 48 131-190 9-60 (118)
265 cd00516 PRTase_typeII Phosphor 28.9 57 0.0012 31.1 3.4 25 133-157 49-73 (281)
266 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 26.4 54 0.0012 25.4 2.3 55 138-195 2-67 (86)
267 COG0213 DeoA Thymidine phospho 26.2 58 0.0013 33.9 3.0 28 130-157 373-400 (435)
268 PF06898 YqfD: Putative stage 24.5 1E+02 0.0022 31.4 4.4 52 132-191 167-225 (385)
269 TIGR02876 spore_yqfD sporulati 24.5 79 0.0017 32.2 3.6 53 132-191 163-222 (382)
270 PRK11637 AmiB activator; Provi 23.9 1E+02 0.0023 31.5 4.4 67 119-196 332-401 (428)
271 cd01571 NAPRTase_B Nicotinate 23.7 80 0.0017 31.1 3.4 23 133-157 53-75 (302)
272 PRK02259 aspartoacylase; Provi 22.9 39 0.00085 32.9 1.0 51 137-191 229-281 (288)
273 smart00226 LMWPc Low molecular 22.9 70 0.0015 27.1 2.5 31 257-292 42-72 (140)
274 PF09891 DUF2118: Uncharacteri 22.8 85 0.0018 28.1 3.0 42 145-198 75-116 (150)
275 PRK05352 Na(+)-translocating N 22.7 59 0.0013 34.0 2.3 29 164-193 33-61 (448)
276 COG1725 Predicted transcriptio 22.5 35 0.00076 29.7 0.5 19 258-276 35-53 (125)
277 PRK11391 etp phosphotyrosine-p 22.2 79 0.0017 27.5 2.7 31 257-291 45-75 (144)
278 TIGR01764 excise DNA binding d 22.1 76 0.0016 21.1 2.1 33 259-294 16-48 (49)
279 PTZ00403 phosphatidylserine de 21.5 88 0.0019 31.8 3.2 56 134-193 282-338 (353)
280 PRK10126 tyrosine phosphatase; 21.5 72 0.0016 27.6 2.3 32 257-292 45-76 (147)
281 PRK05305 phosphatidylserine de 20.3 3.7E+02 0.0079 24.9 6.9 61 131-193 98-171 (206)
No 1
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=1.2e-68 Score=551.20 Aligned_cols=344 Identities=71% Similarity=1.028 Sum_probs=259.6
Q ss_pred chhhhHhhhhhhhhhhhhhhcccccceEEeecCCCcC---CcccceeeecceeccccceeecccCCccceeeeccccccc
Q 018410 2 AYASHIINHSKKLKNVSNLLWHENAVLVRWFSNDAVS---SRDDLLKIHRHVYVPVESERVINSSAISSVSSVGVFKKKF 78 (356)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (356)
+||+||||||||||+++|+|+|||+.|||||||++|+ |++++.+.+++. ...+..++ ..+++|.|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~ 72 (539)
T PLN02744 1 AYASRIINHSKKLRNVSNLLRREHAALVRYFSNSTRSSLGKGDDIAKRRGYP--PLERRSQP------KVSSLGLFGSNI 72 (539)
T ss_pred CchHHHhhhchhhcchHHHhcccccceEEEecCCCccCcccccchhhcccCC--cccccccc------ccccccccccch
Confidence 5899999999999999999999999999999999999 999999977664 23333333 456789999999
Q ss_pred ceeeccCCCcccccccccccccccccceeccccCCCCCCceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 79 CSVARKAGSPIAGSFLNRGFACSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
||++.+.++|++...+++.|+|+++.++|+|++..+||+|++|.||+||++|+||+|++|+|++||.|++||+||+||||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETD 152 (539)
T PLN02744 73 SRTARKNGSPMTGSGLFKSLSSSQMQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETD 152 (539)
T ss_pred hhhhhhcCCccccchhhhccccccccccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 018410 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPIST 238 (356)
Q Consensus 159 Ka~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (356)
|+++||+||.+|+|.+|++++|++.|++|++|+++.+++++...+.++.+.....++.++. .+.++.+.......+...
T Consensus 153 Ka~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (539)
T PLN02744 153 KATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKA-KPSPPPPKEEEVEKPASS 231 (539)
T ss_pred cceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEccCccccccccccccccccccccccc-cCCCCCcccccccCCCCC
Confidence 9999999999999999999999536999999998865444322221111100000000000 000000000000000000
Q ss_pred CCCCCCCC-CCCCCCCCccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCc
Q 018410 239 SEPKASKP-SAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDY 317 (356)
Q Consensus 239 ~~~~~~~~-~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 317 (356)
+.+....+ .....+.++++||+||+||+|+||||+.|+|||++|||+++||++|+.......+.+.+ .....+...+
T Consensus 232 ~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~--~~~~~~~~~~ 309 (539)
T PLN02744 232 PEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPS--TDSKAPALDY 309 (539)
T ss_pred cccccccccccccccccccCCchhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCC--cccCCCCCcc
Confidence 00000000 01112236789999999999999999999999999999999999998532111111000 0001111124
Q ss_pred ccccCchHHHHHHHHHHhhccCCceEEEEeEEEeccCCC
Q 018410 318 VDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMG 356 (356)
Q Consensus 318 ~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~evdvt~L~~ 356 (356)
+++||++|||+||+||++||++|||||++.|+|||+|++
T Consensus 310 ~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~ 348 (539)
T PLN02744 310 TDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMA 348 (539)
T ss_pred ccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHH
Confidence 678999999999999999999999999999999999873
No 2
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=9.5e-50 Score=397.14 Aligned_cols=241 Identities=50% Similarity=0.798 Sum_probs=182.4
Q ss_pred CCCCceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 114 GLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 114 ~~~~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.+|.|++|.||.|++||+||+|++|.++|||.+.+||+||||||||++|+++++++|+|.||+++||.++|+||.+||+|
T Consensus 34 ~~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaii 113 (470)
T KOG0557|consen 34 KLPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAII 113 (470)
T ss_pred cCCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEE
Confidence 38999999999999999999999999999999999999999999999999999999999999999997799999999999
Q ss_pred eccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHcCCCcc
Q 018410 194 VEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLS 273 (356)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ASP~ARkLA~e~gIDLs 273 (356)
+|+++++++++.++.+.+..+..+..+ +.++++.....+.|...+.+..+.+.....+.++++||++|+||.|+|+|++
T Consensus 114 ve~e~di~~~k~~k~~~s~~~~~~~~~-~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls 192 (470)
T KOG0557|consen 114 VEDEDDIAAFKLPKDEASSGEQSPSAA-PPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELS 192 (470)
T ss_pred ecccccHHHhhccccccccccCCcccC-CCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccc
Confidence 999999998887655422221111111 1111110001111211111111111122224589999999999999999999
Q ss_pred cccccCCCCcccHhhHHHHHHhcCCCCC-CC-----CCCCCCCCCCCCCcccccCchHHHHHHHHHHhhccCCceEEEEe
Q 018410 274 SIKGTGPNGLIVKADIEDYLASRGKEVP-AK-----APKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTV 347 (356)
Q Consensus 274 ~V~GSGp~GRItk~DV~~~~~~~~~~~~-a~-----~~~~~~~~~~~~~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~ 347 (356)
+|+||||+|||++.||++|+........ ++ .++...+..+...|+++|++.||++||+||++|+++|||+|++.
T Consensus 193 ~i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~ 272 (470)
T KOG0557|consen 193 SIPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTV 272 (470)
T ss_pred cCcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEee
Confidence 9999999999999999999874321111 00 11101111223458999999999999999999999999999999
Q ss_pred EEEeccCC
Q 018410 348 DICVDNLM 355 (356)
Q Consensus 348 evdvt~L~ 355 (356)
++++++|+
T Consensus 273 ~~~~d~ll 280 (470)
T KOG0557|consen 273 DVNLDKLL 280 (470)
T ss_pred eeehHHHH
Confidence 99999886
No 3
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=5.2e-42 Score=344.82 Aligned_cols=212 Identities=44% Similarity=0.657 Sum_probs=159.2
Q ss_pred ceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 118 ~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
.++|+||+||++|+||+|++|+|++||.|++||+|+||||||+++||+||++|+|.+|++++|+ +|+||++|++|.+++
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~-~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD-TVPVGAVIARIEEEG 80 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCC-EEcCCCeEEEEecCC
Confidence 3699999999999999999999999999999999999999999999999999999999999998 899999999995543
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHcCCCcccccc
Q 018410 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (356)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~G 277 (356)
++.. ..+. .+ +.+..+. +..++.+ .......+.++||++|+||+|+||||.++.|
T Consensus 81 ~~~~-------a~~~---~~----~~~~~~~------~~~~~~~-----~~~~~~~~~~asP~~r~la~e~gidl~~v~g 135 (404)
T COG0508 81 ADAP-------AAAE---AP----PEPAAAA------PASAPAT-----AASAAAGRVLASPAVRRLAREAGIDLSKVKG 135 (404)
T ss_pred Cccc-------ccCc---cc----CCccccC------cCcccCc-----cccccccccccCcchhhhhhhcCCCHHHcCC
Confidence 3210 0000 00 0000000 0000000 0000013678999999999999999999999
Q ss_pred cCCCCcccHhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCchHHHHHHHHHHhhccCCceEEEEeEEEeccCC
Q 018410 278 TGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (356)
Q Consensus 278 SGp~GRItk~DV~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~evdvt~L~ 355 (356)
||++|||+++|++.++...........+..+.+......++++||++|||.||+||.+||+++||+|++.++||++|+
T Consensus 136 tG~~gri~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~ 213 (404)
T COG0508 136 TGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLM 213 (404)
T ss_pred cCCCCceeccchhhhcccccccccccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHH
Confidence 999999999999998764311111111100011112345778999999999999999999999999999999999886
No 4
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=6.7e-41 Score=350.68 Aligned_cols=239 Identities=27% Similarity=0.396 Sum_probs=159.6
Q ss_pred CceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 117 PHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 117 ~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
..++|.||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+ .|++|++|++|.++
T Consensus 134 ~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~ 212 (590)
T TIGR02927 134 AATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDD-TVDVGAEIAKIGDA 212 (590)
T ss_pred CceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCC-EecCCCEEEEEecC
Confidence 34799999999999999999999999999999999999999999999999999999999999997 89999999998543
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCC--CcccCCCC--CCCCCCCC-C-CCCCCCCCCccCChHHHHHHHHcCC
Q 018410 197 EEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPK--QEEVEKPI--STSEPKAS-K-PSAASPEDRLFASPVARNLAEEHNV 270 (356)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~-~-~~~~~~~~~v~ASP~ARkLA~e~gI 270 (356)
+++.................+....+...... ......+. ....+... . ......+.++++||+|||||+|+||
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gv 292 (590)
T TIGR02927 213 GAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGI 292 (590)
T ss_pred CCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCC
Confidence 33221100000000000000000000000000 00000000 00000000 0 0001122367899999999999999
Q ss_pred CcccccccCCCCcccHhhHHHHHHhcCC--CCCCC-----CCCCC--CCC--CC---CCCcccccCchHHHHHHHHHHhh
Q 018410 271 SLSSIKGTGPNGLIVKADIEDYLASRGK--EVPAK-----APKGK--DVA--AP---ALDYVDIPHSQIRKITASRLLFS 336 (356)
Q Consensus 271 DLs~V~GSGp~GRItk~DV~~~~~~~~~--~~~a~-----~~~~~--~~~--~~---~~~~~~vpmS~mRK~IA~rL~~S 336 (356)
||++|+|||++|||+++||++|+..... ..+.. .+... ... .+ ...++++||++|||+||+||++|
T Consensus 293 dl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S 372 (590)
T TIGR02927 293 DLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREA 372 (590)
T ss_pred CHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHH
Confidence 9999999999999999999999853211 10100 00000 000 00 11245789999999999999999
Q ss_pred ccCCceEEEEeEEEeccCCC
Q 018410 337 KQTIPHYYLTVDICVDNLMG 356 (356)
Q Consensus 337 ~~tiPH~tl~~evdvt~L~~ 356 (356)
|++|||||++.|+|||+|++
T Consensus 373 ~~~iPh~~~~~evdvt~l~~ 392 (590)
T TIGR02927 373 LQASAQLTQLHEVDMTKIAA 392 (590)
T ss_pred hccCCeEEEEeEEEcHHHHH
Confidence 99999999999999999873
No 5
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=1.3e-40 Score=335.04 Aligned_cols=211 Identities=30% Similarity=0.418 Sum_probs=154.3
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccCC
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~~ 198 (356)
++|+||+||++|+||+|.+|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+ .|++|++|++|.++++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~~ 81 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-TVTVGQVLGRIDEGAA 81 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCc
Confidence 589999999999999999999999999999999999999999999999999999999999997 8999999999844322
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHcCCCccccccc
Q 018410 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGT 278 (356)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~GS 278 (356)
+.+. .+. +....+ +. + .+... +.. .... ...+.+||+||+||+|+||||++|+||
T Consensus 82 ~~~~----~~~-------~~~~~~-~~---~----~~~~~--~~~---~~~~-~~~~~asP~aR~lA~e~gidl~~v~gt 136 (407)
T PRK05704 82 AGAA----AAA-------AAAAAA-AA---A----APAQA--QAA---AAAE-QSNDALSPAARKLAAENGLDASAVKGT 136 (407)
T ss_pred cccc----CCC-------CCCCCC-CC---C----CCCCC--CCC---ccCC-CccccCCchhhhHHhhcCCChhhCCCC
Confidence 1100 000 000000 00 0 00000 000 0000 113568999999999999999999999
Q ss_pred CCCCcccHhhHHHHHHhcCCCCC-CCCCCCCC-CC-CCCCCcccccCchHHHHHHHHHHhhccCCceEEEEeEEEeccCC
Q 018410 279 GPNGLIVKADIEDYLASRGKEVP-AKAPKGKD-VA-APALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (356)
Q Consensus 279 Gp~GRItk~DV~~~~~~~~~~~~-a~~~~~~~-~~-~~~~~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~evdvt~L~ 355 (356)
|++|||+++||++|++....... .+...... +. ......+.+||++|||+||+||++||++|||||++.|+|+++|+
T Consensus 137 G~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~ 216 (407)
T PRK05704 137 GKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVM 216 (407)
T ss_pred CCCCcccHHHHHHHhhcccccCCCCCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHH
Confidence 99999999999999743211100 00000000 00 01112346899999999999999999999999999999999986
No 6
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=3.6e-40 Score=331.36 Aligned_cols=211 Identities=28% Similarity=0.431 Sum_probs=154.3
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccCC
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~~ 198 (356)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.+|++++|+ .|++|++|++|.++++
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~-~v~vG~~l~~i~~~~~ 79 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGD-TVESGQVLAILEEGND 79 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCC
Confidence 478999999999999999999999999999999999999999999999999999999999997 8999999999843221
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHcCCCccccccc
Q 018410 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGT 278 (356)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~GS 278 (356)
. . +... ++.. +.+. ..... + ..+.+ . ....++.+||+||+||+|+||||+.|+||
T Consensus 80 ~-~-------~~~~---~~~~--~~~~--~~~~~--~-~~~~~-----~--~~~~~~~asP~aR~lA~e~gvdl~~v~gt 134 (403)
T TIGR01347 80 A-T-------AAPP---AKSG--EEKE--ETPAA--S-AAAAP-----T--AAANRPSLSPAARRLAKEHGIDLSAVPGT 134 (403)
T ss_pred C-c-------cccc---cccc--CCCC--CCCCC--C-CCCCC-----c--CccccccCCchhhhHHHHcCCChhhCCCC
Confidence 1 0 0000 0000 0000 00000 0 00000 0 11225679999999999999999999999
Q ss_pred CCCCcccHhhHHHHHHhcCC-CCCCCCCCCCCCCCCCCCcccccCchHHHHHHHHHHhhccCCceEEEEeEEEeccCC
Q 018410 279 GPNGLIVKADIEDYLASRGK-EVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (356)
Q Consensus 279 Gp~GRItk~DV~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~evdvt~L~ 355 (356)
|++|||+++||++|++.... ..+...+....+.......+.+||++|||+||++|++||++|||||++.++|+++|+
T Consensus 135 G~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~ 212 (403)
T TIGR01347 135 GVTGRVTKEDIIKKTEAPASAQAPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVM 212 (403)
T ss_pred CCCCcccHHHHHHhhhcccccCCCCCCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHH
Confidence 99999999999999753211 000000000000001112346899999999999999999999999999999999886
No 7
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=1.2e-38 Score=331.29 Aligned_cols=229 Identities=23% Similarity=0.371 Sum_probs=155.9
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccCC
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~~ 198 (356)
++|+||+||+ |+||+|++|+|++||.|++||.||+|||||++++|+||++|+|.+|++++|+ .|++|++|++|.++++
T Consensus 117 ~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 117 QEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD-SVPTGDLILTLSVAGS 194 (546)
T ss_pred eEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence 6999999999 9999999999999999999999999999999999999999999999999997 8999999999854332
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCc-cCChHHHHHHHHcCCCcccccc
Q 018410 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRL-FASPVARNLAEEHNVSLSSIKG 277 (356)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~ASP~ARkLA~e~gIDLs~V~G 277 (356)
+..... .+. .. .+....+.+....+.....+.....+.. .......+.++ ++||+||+||+|+||||+.|+|
T Consensus 195 ~~~~~~--~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~g 267 (546)
T TIGR01348 195 TPATAP--APA-SA---QPAAQSPAATQPEPAAAPAAAKAQAPAP-QQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKG 267 (546)
T ss_pred Cccccc--Ccc-cc---cccCCCCccccccccCCCCCCCccCccc-ccccccccccccCCCHHHHHHHHHcCCCHhhCCC
Confidence 211000 000 00 0000000000000000000000000000 00001112245 6999999999999999999999
Q ss_pred cCCCCcccHhhHHHHHHhcCC-CCCCCCCCC-C---CCCCC-----C-CCcccccCchHHHHHHHHHHhhccCCceEEEE
Q 018410 278 TGPNGLIVKADIEDYLASRGK-EVPAKAPKG-K---DVAAP-----A-LDYVDIPHSQIRKITASRLLFSKQTIPHYYLT 346 (356)
Q Consensus 278 SGp~GRItk~DV~~~~~~~~~-~~~a~~~~~-~---~~~~~-----~-~~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~ 346 (356)
||++|||+++||++|+..... .++.+.+.. . ....+ . ..++++||++|||.||++|++||++|||||++
T Consensus 268 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~ 347 (546)
T TIGR01348 268 TGIKGRILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHF 347 (546)
T ss_pred CCCCCeEeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEE
Confidence 999999999999999753211 110000000 0 00000 0 12356899999999999999999999999999
Q ss_pred eEEEeccCCC
Q 018410 347 VDICVDNLMG 356 (356)
Q Consensus 347 ~evdvt~L~~ 356 (356)
.|+|||+|++
T Consensus 348 ~evdvt~l~~ 357 (546)
T TIGR01348 348 DKADITEMEA 357 (546)
T ss_pred EEEEcHHHHH
Confidence 9999999863
No 8
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=4.1e-38 Score=319.34 Aligned_cols=235 Identities=47% Similarity=0.778 Sum_probs=155.5
Q ss_pred EecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCee-eeCCCEEEEEeccCCc
Q 018410 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKE-IKVGEVIAITVEEEED 199 (356)
Q Consensus 121 i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~-V~vG~~la~i~~~~~~ 199 (356)
|.||+||++|+||+|.+|+|++||.|+.||+||+|||||++++|+||.+|+|.+|++++|+ . |++|++|++|.+++++
T Consensus 2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~-~~v~vG~~l~~i~~~~~~ 80 (435)
T TIGR01349 2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT-KDVPVNKPIAVLVEEKED 80 (435)
T ss_pred cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC-EEecCCCEEEEEeccCCc
Confidence 6799999999999999999999999999999999999999999999999999999999997 8 9999999998543322
Q ss_pred cccc-cCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC-CCCCCCCC-CCCCCCCCccCChHHHHHHHHcCCCccccc
Q 018410 200 IPKF-KDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPIST-SEPKASKP-SAASPEDRLFASPVARNLAEEHNVSLSSIK 276 (356)
Q Consensus 200 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~ 276 (356)
.... .............+....+..+...+.....+... +.+..... .....+.++++||+||+||+|+||||++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~ 160 (435)
T TIGR01349 81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA 160 (435)
T ss_pred cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence 1100 00000000000000000000000000000000000 00000000 001112357899999999999999999999
Q ss_pred ccCCCCcccHhhHHHHHHhcCCCCCCC--CCCCC--CCCC--CCCCcccccCchHHHHHHHHHHhhccCCceEEEEeEEE
Q 018410 277 GTGPNGLIVKADIEDYLASRGKEVPAK--APKGK--DVAA--PALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDIC 350 (356)
Q Consensus 277 GSGp~GRItk~DV~~~~~~~~~~~~a~--~~~~~--~~~~--~~~~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~evd 350 (356)
|||++|||+++||++|+.......+.+ .+... .... .....+++||++|||.||++|++||++|||||++.++|
T Consensus 161 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~evd 240 (435)
T TIGR01349 161 GSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIECN 240 (435)
T ss_pred CCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEEE
Confidence 999999999999999985421111110 00000 0000 11123568999999999999999999999999999999
Q ss_pred eccCCC
Q 018410 351 VDNLMG 356 (356)
Q Consensus 351 vt~L~~ 356 (356)
||+|++
T Consensus 241 ~t~l~~ 246 (435)
T TIGR01349 241 VDKLLA 246 (435)
T ss_pred hHHHHH
Confidence 999863
No 9
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=3.5e-37 Score=320.43 Aligned_cols=224 Identities=31% Similarity=0.445 Sum_probs=154.9
Q ss_pred ceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 118 ~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
..+|.||+||+ |+||+|++|+|++||.|++||.||+|||||+.++|+||++|+|.++++++|+ .|++|++|+++.+.+
T Consensus 119 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~-~v~~G~~l~~i~~~~ 196 (547)
T PRK11855 119 VVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD-KVSVGSLLVVIEVAA 196 (547)
T ss_pred ceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCC-EecCCCEEEEEecCC
Confidence 37999999999 9999999999999999999999999999999999999999999999999997 899999999985432
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCc-cCChHHHHHHHHcCCCccccc
Q 018410 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRL-FASPVARNLAEEHNVSLSSIK 276 (356)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~ASP~ARkLA~e~gIDLs~V~ 276 (356)
++..... .+. .. .+.. ...+.+. . .+.....+............+. ++||+||+||+|+||||++|+
T Consensus 197 ~~~~~~~--~~~--~~--~~~~-~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~ 264 (547)
T PRK11855 197 AAPAAAA--APA--AA--APAA-AAAAAPA-P----APAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQVK 264 (547)
T ss_pred Ccccccc--CCC--CC--CCcc-ccccCCC-C----CCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHCc
Confidence 2210000 000 00 0000 0000000 0 0000000000000000111234 799999999999999999999
Q ss_pred ccCCCCcccHhhHHHHHHhcCCC--CCCC-CCCC---CC--CCCCC------CCcccccCchHHHHHHHHHHhhccCCce
Q 018410 277 GTGPNGLIVKADIEDYLASRGKE--VPAK-APKG---KD--VAAPA------LDYVDIPHSQIRKITASRLLFSKQTIPH 342 (356)
Q Consensus 277 GSGp~GRItk~DV~~~~~~~~~~--~~a~-~~~~---~~--~~~~~------~~~~~vpmS~mRK~IA~rL~~S~~tiPH 342 (356)
|||++|||+++||++|+...... .++. .... .. ...+. ..++++||++|||.||+||++||++|||
T Consensus 265 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~ 344 (547)
T PRK11855 265 GTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPH 344 (547)
T ss_pred CCCCCCcEeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCe
Confidence 99999999999999997532111 0000 0000 00 00010 1135689999999999999999999999
Q ss_pred EEEEeEEEeccCC
Q 018410 343 YYLTVDICVDNLM 355 (356)
Q Consensus 343 ~tl~~evdvt~L~ 355 (356)
||++.++||++|+
T Consensus 345 ~~~~~evd~t~l~ 357 (547)
T PRK11855 345 VTQFDEADITDLE 357 (547)
T ss_pred EEEEEEEEChHHH
Confidence 9999999999986
No 10
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=3.1e-37 Score=325.54 Aligned_cols=222 Identities=27% Similarity=0.387 Sum_probs=154.6
Q ss_pred ceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 118 ~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
.++|+||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+ .|++|++|+.|.+++
T Consensus 206 ~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~-~v~~G~~l~~i~~~~ 282 (633)
T PRK11854 206 VKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGD-KVKTGSLIMRFEVEG 282 (633)
T ss_pred ceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCC-EecCCCEEEEEecCC
Confidence 4799999999 9999999999999999999999999999999999999999999999999997 899999999985433
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCC-CCCCCCCCCCCccCChHHHHHHHHcCCCccccc
Q 018410 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKA-SKPSAASPEDRLFASPVARNLAEEHNVSLSSIK 276 (356)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~ 276 (356)
++.... +.. .. +.. +.+.+... . .+...+.+.. ........+.++++||+||+||+|+||||+.|+
T Consensus 283 ~~~~~~----~~~-~~---~~~--~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~ 349 (633)
T PRK11854 283 AAPAAA----PAK-QE---AAA--PAPAAAKA-E--APAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVK 349 (633)
T ss_pred CCcccc----ccc-cC---CCC--CCcccccc-C--CCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhcC
Confidence 221000 000 00 000 00000000 0 0000000000 000001112357899999999999999999999
Q ss_pred ccCCCCcccHhhHHHHHHhcCC-CC--CCCCCCC-C-C--C--CC-C--C-CCcccccCchHHHHHHHHHHhhccCCceE
Q 018410 277 GTGPNGLIVKADIEDYLASRGK-EV--PAKAPKG-K-D--V--AA-P--A-LDYVDIPHSQIRKITASRLLFSKQTIPHY 343 (356)
Q Consensus 277 GSGp~GRItk~DV~~~~~~~~~-~~--~a~~~~~-~-~--~--~~-~--~-~~~~~vpmS~mRK~IA~rL~~S~~tiPH~ 343 (356)
|||++|||+++||++|+..... .. +...+.. . + . +. + . ..++++||++|||+||+||++||++||||
T Consensus 350 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~ 429 (633)
T PRK11854 350 GTGRKGRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHV 429 (633)
T ss_pred CCCCCCeEeHHHHHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeE
Confidence 9999999999999999754211 00 1000000 0 0 0 00 0 0 11346899999999999999999999999
Q ss_pred EEEeEEEeccCC
Q 018410 344 YLTVDICVDNLM 355 (356)
Q Consensus 344 tl~~evdvt~L~ 355 (356)
|++.++|||+|+
T Consensus 430 ~~~~evD~t~l~ 441 (633)
T PRK11854 430 TQFDKADITELE 441 (633)
T ss_pred EEEeEEEcHHHH
Confidence 999999999986
No 11
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=1.4e-36 Score=305.82 Aligned_cols=222 Identities=39% Similarity=0.554 Sum_probs=156.1
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccCC
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~~ 198 (356)
.+|.||+||++|+||+|.+|+|++||.|++||+||+|||||+.++|+||.+|+|.++++++|+ .|.+|++|+++.+.++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~-~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGD-VVPVGSVIAVIEEEGE 81 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCC-EeCCCCEEEEEecCCC
Confidence 489999999999999999999999999999999999999999999999999999999999997 8999999999854432
Q ss_pred -ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHcCCCcccccc
Q 018410 199 -DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (356)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~G 277 (356)
+.... +..... .+. +.+.+. . .+.....+............++.+||+||+||+|+||||++|+|
T Consensus 82 ~~~~~~----~~~~~~--~~~---~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~g 147 (411)
T PRK11856 82 AEAAAA----AEAAPE--APA---PEPAPA-A----AAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKG 147 (411)
T ss_pred Cccccc----cCCCCC--CCC---CCCCCC-C----CCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcC
Confidence 21100 000000 000 000000 0 00000000000000001112346899999999999999999999
Q ss_pred cCCCCcccHhhHHHHHHhcCCCCC-CCCCCCCCCCCCCCCcccccCchHHHHHHHHHHhhccCCceEEEEeEEEeccCC
Q 018410 278 TGPNGLIVKADIEDYLASRGKEVP-AKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (356)
Q Consensus 278 SGp~GRItk~DV~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~evdvt~L~ 355 (356)
||++|||+++||++|+........ ...+....+......++.+||++|||.||++|.+||+++||||++.++|||+|+
T Consensus 148 sG~~Gri~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~ 226 (411)
T PRK11856 148 SGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALL 226 (411)
T ss_pred CCCCCeEEHHHHHHHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHH
Confidence 999999999999999853211110 000000000011113567899999999999999999999999999999999986
No 12
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.5e-36 Score=306.47 Aligned_cols=209 Identities=26% Similarity=0.427 Sum_probs=150.2
Q ss_pred EecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccCCcc
Q 018410 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 200 (356)
Q Consensus 121 i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~~~~ 200 (356)
++||+||++|+||+|++|+|++||.|++||+||+|||||+.++++|+.+|+|.+|++++|+ .|++|++|++|..++++.
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~~~ 79 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGD-IVKVGETLLKIMVEDSQH 79 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEeccCCcc
Confidence 3699999999999999999999999999999999999999999999999999999999997 899999999884332221
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHcCCCcccccccCC
Q 018410 201 PKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGP 280 (356)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~GSGp 280 (356)
.. ..... .+... .+. . .+. .+.. .. .....+++||+||+||+|+||||+.|+|||+
T Consensus 80 ~~-----~~~~~---~~~~~---~~~--~----~~~-~~~~-----~~-~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~ 135 (416)
T PLN02528 80 LR-----SDSLL---LPTDS---SNI--V----SLA-ESDE-----RG-SNLSGVLSTPAVRHLAKQYGIDLNDILGTGK 135 (416)
T ss_pred cc-----ccCCC---CCCCC---ccC--C----CCC-CCCc-----cc-cccCCccCChHHHHHHHHhCCCHHHCCCCCC
Confidence 00 00000 00000 000 0 000 0000 00 0011357899999999999999999999999
Q ss_pred CCcccHhhHHHHHHhcCC-CCC--CCCCCCCCC-------CCC-CC--CcccccCchHHHHHHHHHHhhccCCceEEEEe
Q 018410 281 NGLIVKADIEDYLASRGK-EVP--AKAPKGKDV-------AAP-AL--DYVDIPHSQIRKITASRLLFSKQTIPHYYLTV 347 (356)
Q Consensus 281 ~GRItk~DV~~~~~~~~~-~~~--a~~~~~~~~-------~~~-~~--~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~ 347 (356)
+|||+++||++|++.... ..+ ++....+.. ..+ .. ..+++||++|||+||++|++|| +|||||++.
T Consensus 136 ~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~ 214 (416)
T PLN02528 136 DGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVE 214 (416)
T ss_pred CCcEeHHHHHHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEE
Confidence 999999999999753211 000 000000000 000 01 1346899999999999999998 999999999
Q ss_pred EEEeccCC
Q 018410 348 DICVDNLM 355 (356)
Q Consensus 348 evdvt~L~ 355 (356)
|+||++|+
T Consensus 215 eid~~~l~ 222 (416)
T PLN02528 215 EINVDALV 222 (416)
T ss_pred EEEhHHHH
Confidence 99999986
No 13
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=99.97 E-value=2.3e-31 Score=257.20 Aligned_cols=208 Identities=24% Similarity=0.388 Sum_probs=153.3
Q ss_pred ceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 118 ~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
.+.+++-++||++.|.+|.+|+|+|||+|++-|.||||++||++++|.+-++|+|++|+...+| .+.||++|..+ +.+
T Consensus 64 vv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~dd-ia~VGk~Lvd~-eve 141 (474)
T KOG0558|consen 64 VVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDD-IAKVGKPLVDL-EVE 141 (474)
T ss_pred eEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchh-hhHhCcceeee-eec
Confidence 5789999999999999999999999999999999999999999999999999999999999997 89999999866 222
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHcCCCcccccc
Q 018410 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (356)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~G 277 (356)
+... .++.+ ...+.. ...+. . ....+.....++|++|+||.|+||||+.|+|
T Consensus 142 ~~~d-----s~e~s----------~es~~v---s~~~~-~---------~~~~~~~~tlaTPaVRrlA~e~~idla~v~g 193 (474)
T KOG0558|consen 142 DSQD-----SPEDS----------DESPAV---SLGES-K---------QGEESLLKTLATPAVRRLAKENGIDLAEVTG 193 (474)
T ss_pred cCcC-----CcccC----------Cccccc---cCCCC-c---------hhhhhccccccCHHHHHHHHHhCCceEeeec
Confidence 2110 00000 000000 00000 0 0011122456899999999999999999999
Q ss_pred cCCCCcccHhhHHHHHHhcCCCCCCCC-------CCCCCCC--CCC-CCcccccCchHHHHHHHHHHhhccCCceEEEEe
Q 018410 278 TGPNGLIVKADIEDYLASRGKEVPAKA-------PKGKDVA--APA-LDYVDIPHSQIRKITASRLLFSKQTIPHYYLTV 347 (356)
Q Consensus 278 SGp~GRItk~DV~~~~~~~~~~~~a~~-------~~~~~~~--~~~-~~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~ 347 (356)
||.+|||+|+||++|+.+.......+. +.+.+.. .+. .....+|+.+.+|++-+-|+++ ..||||-+.+
T Consensus 194 tGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~d 272 (474)
T KOG0558|consen 194 TGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYVD 272 (474)
T ss_pred cCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHH-hcCCcccccc
Confidence 999999999999999976532111000 0000000 001 1134689999999999999998 5799999999
Q ss_pred EEEeccCCC
Q 018410 348 DICVDNLMG 356 (356)
Q Consensus 348 evdvt~L~~ 356 (356)
|||+|.|++
T Consensus 273 EIn~~sLvk 281 (474)
T KOG0558|consen 273 EINCDSLVK 281 (474)
T ss_pred ccChHHHHH
Confidence 999999863
No 14
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.97 E-value=3.7e-30 Score=259.37 Aligned_cols=89 Identities=34% Similarity=0.600 Sum_probs=81.1
Q ss_pred ccccccceeccccCCCCCCceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeec
Q 018410 99 ACSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178 (356)
Q Consensus 99 ~~~~~~~~r~~~~~~~~~~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~ 178 (356)
.|+.++++|++. .++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||.+|+|.+|+++
T Consensus 32 ~~~~~~~~~~~~-------i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~ 104 (418)
T PTZ00144 32 ACSAHFSKSYFS-------IKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAE 104 (418)
T ss_pred hhhhhccccccc-------ceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeC
Confidence 466666666543 3799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeCCCEEEEEec
Q 018410 179 DGSKEIKVGEVIAITVE 195 (356)
Q Consensus 179 eG~~~V~vG~~la~i~~ 195 (356)
+|+ .|++|++|++|.+
T Consensus 105 ~G~-~V~~G~~L~~I~~ 120 (418)
T PTZ00144 105 EGD-TVEVGAPLSEIDT 120 (418)
T ss_pred CCC-EecCCCEEEEEcC
Confidence 997 8999999999843
No 15
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.97 E-value=8.3e-30 Score=258.94 Aligned_cols=193 Identities=26% Similarity=0.421 Sum_probs=130.9
Q ss_pred ceeccccCCCCCCceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeee
Q 018410 105 LKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEI 184 (356)
Q Consensus 105 ~~r~~~~~~~~~~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V 184 (356)
|-|.|...+.-+ .+|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|| .|
T Consensus 80 ~~~~~~~~~~~m--~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd-~V 156 (463)
T PLN02226 80 WVRPFSSESGDT--VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD-TV 156 (463)
T ss_pred cccccccccCCc--eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCC-Ee
Confidence 456665543322 699999999999999999999999999999999999999999999999999999999999997 89
Q ss_pred eCCCEEEEEeccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCChHHHHH
Q 018410 185 KVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNL 264 (356)
Q Consensus 185 ~vG~~la~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ASP~ARkL 264 (356)
++|++|++|.+++++. . . .. ... ..+.. . ...+.. +.+ . .. ..++.++|++|+.
T Consensus 157 ~vG~~L~~I~~~~~~~---~----~-~~----~~~--~~~~~--~--~~~~~~-~~~-----~-~~-~~~v~asp~~r~~ 210 (463)
T PLN02226 157 EPGTKVAIISKSEDAA---S----Q-VT----PSQ--KIPET--T--DPKPSP-PAE-----D-KQ-KPKVESAPVAEKP 210 (463)
T ss_pred cCCCEEEEeccCCccc---c----c-cC----ccC--CCCCC--C--CCCCCC-ccc-----c-cc-ccCCCcchhhccc
Confidence 9999999984322110 0 0 00 000 00000 0 000000 000 0 00 1256788988764
Q ss_pred HHHcCCCcccccccCCCCcccHhhHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccCchHHHHHHHHHHhhccCCceEE
Q 018410 265 AEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYY 344 (356)
Q Consensus 265 A~e~gIDLs~V~GSGp~GRItk~DV~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~vpmS~mRK~IA~rL~~S~~tiPH~t 344 (356)
+ .++|+.+.. . +...+ ........+.+||++|||+||+||++||++|||||
T Consensus 211 ~----------~~~~~~~~~--------------~-~~~~~----~~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t 261 (463)
T PLN02226 211 K----------APSSPPPPK--------------Q-SAKEP----QLPPKERERRVPMTRLRKRVATRLKDSQNTFALLT 261 (463)
T ss_pred c----------CCCCCCCCc--------------c-cccCc----ccccCCCceeeeChHHHHHHHHHHHHHHhcCCEEE
Confidence 3 234443210 0 00000 00001123568999999999999999999999999
Q ss_pred EEeEEEeccCC
Q 018410 345 LTVDICVDNLM 355 (356)
Q Consensus 345 l~~evdvt~L~ 355 (356)
++.|+|||+|+
T Consensus 262 ~~~evDvt~L~ 272 (463)
T PLN02226 262 TFNEVDMTNLM 272 (463)
T ss_pred EEEEEEcHHHH
Confidence 99999999986
No 16
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=99.95 E-value=4.6e-28 Score=235.25 Aligned_cols=92 Identities=32% Similarity=0.537 Sum_probs=80.9
Q ss_pred ccccccccceeccccCCCCCCceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 97 GFACSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 97 ~~~~~~~~~~r~~~~~~~~~~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
.++.+.+.|.|..++ +.+++.+|.++++++||.|.+|++++||.|+++|.||+|||||.+++|+||.+|+|.+++
T Consensus 56 ~~~~~~~~~~~~~~t-----s~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~l 130 (457)
T KOG0559|consen 56 MFSTRLVLWARVRST-----SVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELL 130 (457)
T ss_pred cccchhhhheeeecc-----ceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEe
Confidence 344344555554433 257999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeeeeCCCEEEEEe
Q 018410 177 KGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 177 v~eG~~~V~vG~~la~i~ 194 (356)
+++|| +|.+|+.|+.|.
T Consensus 131 vk~gd-tV~~g~~la~i~ 147 (457)
T KOG0559|consen 131 VKDGD-TVTPGQKLAKIS 147 (457)
T ss_pred cCCCC-cccCCceeEEec
Confidence 99998 899999999983
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=99.81 E-value=4e-20 Score=183.20 Aligned_cols=103 Identities=30% Similarity=0.479 Sum_probs=78.7
Q ss_pred CCccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHHhcCCCC----CCCCCCCCCCCC---CCCCcccccCchH
Q 018410 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEV----PAKAPKGKDVAA---PALDYVDIPHSQI 325 (356)
Q Consensus 253 ~~v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~~~~~~~----~a~~~~~~~~~~---~~~~~~~vpmS~m 325 (356)
.++++||+||+||+|+||||++|+|||++|||+++||++|+....... ++..+.....+. .....+.+||++|
T Consensus 47 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 126 (347)
T PRK14843 47 NVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTPM 126 (347)
T ss_pred ccccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCcHH
Confidence 366799999999999999999999999999999999999974321100 000000000000 0112456899999
Q ss_pred HHHHHHHHHhhccCCceEEEEeEEEeccCC
Q 018410 326 RKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (356)
Q Consensus 326 RK~IA~rL~~S~~tiPH~tl~~evdvt~L~ 355 (356)
||.||++|++||++|||||++.|+||++|+
T Consensus 127 r~~ia~~m~~S~~~ip~~~~~~evd~t~l~ 156 (347)
T PRK14843 127 RKVIAQRMVESYLTAPTFTLNYEVDMTEML 156 (347)
T ss_pred HHHHHHHHHHHHhhCCeEEEEEEEEchHHH
Confidence 999999999999999999999999999986
No 18
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.80 E-value=5.9e-20 Score=179.21 Aligned_cols=101 Identities=27% Similarity=0.380 Sum_probs=77.0
Q ss_pred ccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHHhcC--CCC--CCCCCC--CC----CCC--CCCCCcccccC
Q 018410 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRG--KEV--PAKAPK--GK----DVA--APALDYVDIPH 322 (356)
Q Consensus 255 v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~~~~--~~~--~a~~~~--~~----~~~--~~~~~~~~vpm 322 (356)
+++||+||+||+|+||||++|+|||++|||+++||++|+.... ... +.+.+. .. .+. .+....+.+||
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKV 81 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceeccC
Confidence 4689999999999999999999999999999999999975321 010 000000 00 000 01112346899
Q ss_pred chHHHHHHHHHHhhccCCceEEEEeEEEeccCC
Q 018410 323 SQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (356)
Q Consensus 323 S~mRK~IA~rL~~S~~tiPH~tl~~evdvt~L~ 355 (356)
++||+.||++|++||++|||||++.|+||++|+
T Consensus 82 s~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~ 114 (306)
T PRK11857 82 APIRKAIARAMTNSWSNVAYVNLVNEIDMTKLW 114 (306)
T ss_pred cHHHHHHHHHHHHhhccCCeEEEEEEEEchHHH
Confidence 999999999999999999999999999999986
No 19
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.78 E-value=8e-19 Score=170.22 Aligned_cols=76 Identities=39% Similarity=0.667 Sum_probs=73.5
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
.+|.||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.+|++++|+ .|.+|++|+.+.+
T Consensus 3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~-~v~~g~~l~~i~~ 78 (371)
T PRK14875 3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE-TLPVGALLAVVAD 78 (371)
T ss_pred eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCC-EeCCCCEEEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999997 8999999999843
No 20
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.78 E-value=7.7e-19 Score=137.30 Aligned_cols=74 Identities=42% Similarity=0.721 Sum_probs=71.5
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.+|++|.+|..+.+++|.+|++++||.|++||+||+||+||+.++|+||.+|+|.++++++|+ .|.+|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~-~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGD-TVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTE-EEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence 378999999999999999999999999999999999999999999999999999999999997 89999999975
No 21
>PRK06748 hypothetical protein; Validated
Probab=99.69 E-value=1.4e-16 Score=127.65 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=59.4
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEec-cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVET-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVET-dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|+|.+|+|++||.|++||+|++||| ||++++|+||.+|+|.+|++++|+ .|++|++|++|
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd-~V~vG~~la~I 73 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQ-AIADQKLLITV 73 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 39999999999999999999999999 999999999999999999999998 89999999998
No 22
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.64 E-value=3.1e-15 Score=153.50 Aligned_cols=81 Identities=56% Similarity=0.893 Sum_probs=75.4
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccCC
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~~ 198 (356)
++|+||+||++|+||+|.+|+|++||.|++||.|++|||||++++|+||.+|+|.+|++++|++.|++|++|++|.++++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999537999999999855444
Q ss_pred c
Q 018410 199 D 199 (356)
Q Consensus 199 ~ 199 (356)
+
T Consensus 83 ~ 83 (464)
T PRK11892 83 S 83 (464)
T ss_pred c
Confidence 3
No 23
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.56 E-value=2.1e-14 Score=111.13 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=59.1
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|+|.+|++++||.|++||+|++||+||+.++|.||.+|+|.++++.+|+ .|..|++|+++
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~-~V~~G~~l~~i 70 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGD-VIQAGDLIAVI 70 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 49999999999999999999999999999999999999999999999997 89999999987
No 24
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.54 E-value=5.2e-14 Score=108.55 Aligned_cols=72 Identities=33% Similarity=0.625 Sum_probs=68.8
Q ss_pred EecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 121 i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|.+|+++..+.+|++.+|++++||.|++||+|++||++|+.++|.||.+|+|.++++..|+ .+..|+.|+.+
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~-~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGT-KVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999997 89999999864
No 25
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.50 E-value=8.3e-14 Score=147.95 Aligned_cols=74 Identities=31% Similarity=0.444 Sum_probs=71.2
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
.+|.||+|| |+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.+|++++|+ .|++|++|++|.+
T Consensus 3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~-~V~~G~~l~~i~~ 76 (633)
T PRK11854 3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGD-KVETGALIMIFES 76 (633)
T ss_pred ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCC-EEeCCCEEEEEec
Confidence 479999999 9999999999999999999999999999999999999999999999999997 8999999999844
No 26
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.49 E-value=1e-13 Score=146.20 Aligned_cols=76 Identities=37% Similarity=0.583 Sum_probs=73.3
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
.+|.||+||++|.||+|.+|+|++||.|+.||+||+|||||++++|+||.+|+|.+|++++|+ .|++|++|+++.+
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd-~v~vG~~ia~i~~ 78 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDD-TVDIGGEIAIIGE 78 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCC-EEeeeeeEEEEee
Confidence 579999999999999999999999999999999999999999999999999999999999997 8999999998854
No 27
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.45 E-value=3.9e-13 Score=103.50 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=58.7
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|+|.+|++++||.|++||+|++||+||+.+++.+|.+|+|.++++.+|+ .|..|++|+.+
T Consensus 10 G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~-~V~~g~~l~~i 69 (70)
T PRK08225 10 GNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGD-FVNEGDVLLEI 69 (70)
T ss_pred EEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCC-EECCCCEEEEE
Confidence 8999999999999999999999999999999999999999999999997 89999999986
No 28
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.45 E-value=2e-13 Score=119.41 Aligned_cols=61 Identities=25% Similarity=0.449 Sum_probs=59.2
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-|++.+.+|++||+|++||+||+||.||+.++|+||.+|+|.+|++++|+ .|..||+|+.|
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~-~Ve~G~~L~~I 138 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD-PVEYGDPLAVI 138 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCC-ccCCCCEEEEe
Confidence 38999999999999999999999999999999999999999999999998 89999999987
No 29
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.42 E-value=1.6e-13 Score=95.16 Aligned_cols=38 Identities=53% Similarity=0.782 Sum_probs=34.2
Q ss_pred CccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHH
Q 018410 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIED 291 (356)
Q Consensus 254 ~v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~ 291 (356)
++++||+||+||+|+|||+++|+|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 57899999999999999999999999999999999974
No 30
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.37 E-value=2.4e-12 Score=134.79 Aligned_cols=75 Identities=33% Similarity=0.528 Sum_probs=72.0
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
++|.||++|+ |.+|+|.+|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+ .|.+|++|+++.+
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd-~V~~G~~L~~i~~ 77 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGD-TVSVGGLLAVIEA 77 (547)
T ss_pred ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCC-EecCCceeeEecc
Confidence 4799999999 9999999999999999999999999999999999999999999999999997 8999999998843
No 31
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.35 E-value=3.8e-12 Score=110.17 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=59.5
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.+|++++|+ .|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQ-VVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEe
Confidence 448999999999999999999999999999999999999999999999997 89999999976
No 32
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.33 E-value=4.9e-12 Score=132.42 Aligned_cols=73 Identities=36% Similarity=0.548 Sum_probs=70.4
Q ss_pred EEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 120 ~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
+|+||+||.. .+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+ .|++|++|+++.
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd-~V~~G~~La~i~ 74 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGD-TLPVGGVIATLE 74 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCC-EEeccceEEEEe
Confidence 6899999987 999999999999999999999999999999999999999999999999997 899999999884
No 33
>PRK07051 hypothetical protein; Validated
Probab=99.31 E-value=1.8e-11 Score=97.08 Aligned_cols=68 Identities=29% Similarity=0.428 Sum_probs=61.7
Q ss_pred eEEecCCCCCCCceEEEEE-------EEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEE
Q 018410 119 QEIGMPSLSPTMQEGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIA 191 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~-------W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la 191 (356)
.+|..|. .|++.+ |++++||.|++||+|++||+||+.++|.||.+|+|.++++++|+ .|..|++|+
T Consensus 4 ~~~~ap~------~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~-~V~~G~~l~ 76 (80)
T PRK07051 4 HEIVSPL------PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGE-PVEAGQVLA 76 (80)
T ss_pred cEEeCCC------ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcC-EECCCCEEE
Confidence 4566663 366777 99999999999999999999999999999999999999999997 899999999
Q ss_pred EE
Q 018410 192 IT 193 (356)
Q Consensus 192 ~i 193 (356)
++
T Consensus 77 ~i 78 (80)
T PRK07051 77 RI 78 (80)
T ss_pred EE
Confidence 87
No 34
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.30 E-value=9e-12 Score=110.66 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=59.5
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|+|.+|++++||.|++||.|++||+||+..+|.||.+|+|.++++.+|+ .|..|++|+.|
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGD-TVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCC-EECCCCEEEEe
Confidence 448999999999999999999999999999999999999999999999997 89999999976
No 35
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.29 E-value=2e-11 Score=91.24 Aligned_cols=62 Identities=27% Similarity=0.498 Sum_probs=58.9
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|+|.+|++++||.|++||.|++|+++|...+|.||.+|+|.++++.+|+ .|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGD-QVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence 469999999999999999999999999999999999999999999999997 89999999864
No 36
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.25 E-value=9.4e-11 Score=86.68 Aligned_cols=73 Identities=56% Similarity=0.865 Sum_probs=69.7
Q ss_pred EEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 120 ~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
++.+|+++.+..+|+|.+|++..|+.|..|++|+.++++|+.+.+.++.+|++.+..+.+|+ .+..|++|+++
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~-~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGD-TVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcC-EeCCCCEEEEC
Confidence 57899999999999999999999999999999999999999999999999999999999997 89999999864
No 37
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.25 E-value=2e-11 Score=116.26 Aligned_cols=61 Identities=31% Similarity=0.502 Sum_probs=58.2
Q ss_pred eEEEEE-------EEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 132 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 132 eg~I~~-------W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|++.+ |+|++||.|++||+||+||+||+.++|+||.+|+|.+|++++|+ .|.+|++|++|
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD-~V~vGqpL~~I 272 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGK-PVSVDTPLFVI 272 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCC-EeCCCCEEEEe
Confidence 377777 99999999999999999999999999999999999999999997 89999999987
No 38
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.24 E-value=2.5e-11 Score=108.11 Aligned_cols=56 Identities=27% Similarity=0.479 Sum_probs=54.2
Q ss_pred EEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|+|++||.|++||+||.||+||+..+|.|+.+|+|.+|++++|+ .|..|++|+.|
T Consensus 100 ~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~-~V~~Gq~L~~i 155 (156)
T TIGR00531 100 KPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ-PVEYGQPLIVI 155 (156)
T ss_pred CccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC-EECCCCEEEEE
Confidence 399999999999999999999999999999999999999999997 89999999976
No 39
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.19 E-value=5.8e-11 Score=105.64 Aligned_cols=56 Identities=25% Similarity=0.462 Sum_probs=54.2
Q ss_pred EEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|+|++||.|++||+||.||+||+..+|+||.+|+|.+|++++|+ .|..|++|+.|
T Consensus 99 ~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~-~V~~Gq~L~~i 154 (155)
T PRK06302 99 PPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ-PVEFGQPLFVI 154 (155)
T ss_pred CcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC-EeCCCCEEEEe
Confidence 499999999999999999999999999999999999999999997 89999999976
No 40
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.15 E-value=1.4e-10 Score=122.34 Aligned_cols=60 Identities=25% Similarity=0.419 Sum_probs=59.0
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|+|++|+|++||.|++||+|++||+||++.+|.||.+|+|.++++++|+ .|.+|++|+.|
T Consensus 534 G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd-~V~~G~~L~~I 593 (596)
T PRK14042 534 GSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGD-KVTPGQVLIRV 593 (596)
T ss_pred eEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcC-EECCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999997 89999999988
No 41
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.07 E-value=3.4e-10 Score=127.88 Aligned_cols=62 Identities=26% Similarity=0.420 Sum_probs=59.6
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-.|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.+|++++|+ .|.+|++|++|
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~-~V~~G~~l~~i 1200 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGD-MVDAGDIVAVL 1200 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCC-EeCCCCEEEEe
Confidence 348999999999999999999999999999999999999999999999997 89999999986
No 42
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.01 E-value=5.5e-10 Score=117.83 Aligned_cols=58 Identities=31% Similarity=0.487 Sum_probs=55.9
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~l 190 (356)
.|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.+|++++|+ .|.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd-~V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGD-AVSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCCC
Confidence 39999999999999999999999999999999999999999999999997 89999975
No 43
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.99 E-value=1.4e-09 Score=115.03 Aligned_cols=62 Identities=27% Similarity=0.452 Sum_probs=59.5
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-.|+|.+|+|++||.|++||+||+||+||+..+|.||.+|+|.++++.+|+ .|..|++|+.|
T Consensus 531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I 592 (593)
T PRK14040 531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGD-AVAVGDTLLTL 592 (593)
T ss_pred ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 348999999999999999999999999999999999999999999999997 89999999986
No 44
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.95 E-value=1.7e-09 Score=121.45 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=59.1
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.+|++.+|+ .|.+|++|++|
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i 1142 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGE-QIDAKDLLLVL 1142 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 38999999999999999999999999999999999999999999999997 89999999986
No 45
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.83 E-value=9e-09 Score=108.94 Aligned_cols=62 Identities=26% Similarity=0.441 Sum_probs=59.6
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|+|.+|++++||.|++||+|++||+||+..+|.||.+|+|.++++++|+ .|..|++|+.|
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i 590 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGD-RVNPGDVLMEI 590 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEe
Confidence 348999999999999999999999999999999999999999999999997 89999999987
No 46
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.72 E-value=2.9e-08 Score=111.98 Aligned_cols=60 Identities=23% Similarity=0.474 Sum_probs=58.8
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.+|++.+|+ .|..|++|+.|
T Consensus 1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~-~V~~g~~l~~i 1144 (1146)
T PRK12999 1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGD-QVEAGDLLVEL 1144 (1146)
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999997 89999999987
No 47
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.60 E-value=8.2e-08 Score=99.52 Aligned_cols=61 Identities=28% Similarity=0.473 Sum_probs=59.1
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|+|+...|++|++|.+||+|+++|.||+...|.||.+|+|.++.+.+|+ .|.+|++|+.+
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd-~V~~g~vLve~ 643 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGD-QVAVGTVLVEF 643 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCC-ccccCceEEEe
Confidence 48999999999999999999999999999999999999999999999998 89999999887
No 48
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.43 E-value=2.8e-07 Score=98.60 Aligned_cols=60 Identities=27% Similarity=0.479 Sum_probs=58.2
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|.|++..|+.||.|++||+|+.+|.||+...|.||.+|+|.+++|.+|| .|..|+.|..+
T Consensus 1088 G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd-~i~~gDLLi~~ 1147 (1149)
T COG1038 1088 GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGD-QIDGGDLLVVV 1147 (1149)
T ss_pred CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCC-ccccCceEEEc
Confidence 8999999999999999999999999999999999999999999999998 89999999865
No 49
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.36 E-value=8.4e-07 Score=72.63 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=48.0
Q ss_pred EEecCCCCCCCceEEEEE-EEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCC
Q 018410 120 EIGMPSLSPTMQEGNIAR-WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGS 181 (356)
Q Consensus 120 ~i~~P~lg~s~~eg~I~~-W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~ 181 (356)
.|.|=+.+..+- |.|.. |++++|+.|++||.|++||++|++.+|.||.+|+|.++....++
T Consensus 17 ~lGlt~~~~~~l-G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~ 78 (96)
T cd06848 17 TVGITDYAQDLL-GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD 78 (96)
T ss_pred EEeeCHHHHhhC-CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence 444444443332 45555 78888999999999999999999999999999999988766554
No 50
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.11 E-value=5.4e-06 Score=87.58 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=58.0
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|+|+++.|++|+.|++||+||.+..||+.+-|.||.+|+|+++.+..|+ .+..|+.|+++
T Consensus 1115 G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~-~~~g~DL~~~~ 1174 (1176)
T KOG0369|consen 1115 GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGT-KVEGGDLIVEL 1174 (1176)
T ss_pred CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCC-cccccceEEEc
Confidence 8999999999999999999999999999999999999999999999997 89999999876
No 51
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.04 E-value=7.8e-06 Score=69.07 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=35.8
Q ss_pred cCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecC
Q 018410 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179 (356)
Q Consensus 141 ~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~e 179 (356)
++|+.|++||+|++||++|+..+|.||.+|+|.++....
T Consensus 39 ~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l 77 (110)
T TIGR03077 39 SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIAL 77 (110)
T ss_pred CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHh
Confidence 679999999999999999999999999999999986433
No 52
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.97 E-value=1.7e-05 Score=67.46 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=34.3
Q ss_pred cCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 141 ~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus 41 ~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 41 SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 669999999999999999999999999999999884
No 53
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.85 E-value=5.6e-05 Score=78.08 Aligned_cols=60 Identities=25% Similarity=0.343 Sum_probs=57.4
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|.|.+.+|++||.|++||.|+.++.+|+..-+.||.+|+|..+.++.|+ +|.-|.+|..+
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~-~v~~g~vlv~~ 669 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGA-TVGDGAVLVEF 669 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCc-ccCCCceEEEe
Confidence 7899999999999999999999999999999999999999999999998 89999999765
No 54
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.83 E-value=3.4e-05 Score=68.13 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=41.3
Q ss_pred EEEEEEEcc-CCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeec
Q 018410 133 GNIARWLKK-EGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178 (356)
Q Consensus 133 g~I~~W~v~-~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~ 178 (356)
|.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++...
T Consensus 44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~ 90 (144)
T PRK13380 44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEA 90 (144)
T ss_pred CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHh
Confidence 567777776 8999999999999999999999999999999988654
No 55
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.81 E-value=6.7e-05 Score=73.12 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=31.4
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
..|.||.+|+|..+.+.+|+ .|..|++|+.|.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQ-VVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCC-EeCCCCeeEEEEcCC
Confidence 46999999999999999997 999999999986643
No 56
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.79 E-value=0.0001 Score=74.95 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=57.2
Q ss_pred ceEEEEEEE-ccCCCEEecCCeEEEEecc------------------------------------------------cee
Q 018410 131 QEGNIARWL-KKEGDKVSPGEVLCEVETD------------------------------------------------KAT 161 (356)
Q Consensus 131 ~eg~I~~W~-v~~Gd~V~~Gd~L~eVETd------------------------------------------------Ka~ 161 (356)
..|.|.+++ +++||.|++||+|++|++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 559999998 9999999999999999831 113
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
..|.||++|+|.++.+.+|+ .|..|++|+.|.+.+
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~-~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGMD 244 (409)
T ss_pred EEEECCCCeEEEEEECCCCC-EECCCCeEEEEEcCC
Confidence 57999999999999999997 899999999986543
No 57
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.77 E-value=1.5e-05 Score=79.69 Aligned_cols=42 Identities=40% Similarity=0.731 Sum_probs=38.9
Q ss_pred CCccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHH
Q 018410 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (356)
Q Consensus 253 ~~v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~ 294 (356)
+++++||.+|++|+++|||+..|+|||++|||+++||+.|..
T Consensus 4 ~~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~ 45 (347)
T PRK14843 4 DKLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKD 45 (347)
T ss_pred ccccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhcc
Confidence 356689999999999999999999999999999999999875
No 58
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.76 E-value=4.6e-05 Score=86.02 Aligned_cols=65 Identities=25% Similarity=0.484 Sum_probs=60.2
Q ss_pred CCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 129 s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
+-+-|++++|+|+.|+.|..||+-+|||.||+.|.+-|+.+|+|. ...++|+ .+..|++||.+.-
T Consensus 690 sPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~-~i~aG~vlakL~l 754 (2196)
T KOG0368|consen 690 SPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGD-AIEAGSVLAKLTL 754 (2196)
T ss_pred CCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCC-ccCccceeEEeec
Confidence 346799999999999999999999999999999999999999997 7789998 8999999998844
No 59
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.73 E-value=5.9e-05 Score=72.32 Aligned_cols=65 Identities=25% Similarity=0.420 Sum_probs=56.7
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccce--------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa-------------------------------------------------- 160 (356)
.+|.|.++++++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 559999999999999999999999975311
Q ss_pred ---------------------eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 161 ---------------------TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 161 ---------------------~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
...|.||.+|+|..+.+..|+ .|..|++|+.+.+.
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGA-YVTAGQTLATIVDL 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCc-eeCCCCcEEEEEcC
Confidence 346999999999999999997 99999999988654
No 60
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.70 E-value=0.0001 Score=72.26 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=56.9
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccc---------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK--------------------------------------------------- 159 (356)
..|.|.+++|++||.|++||+|+++++..
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 55999999999999999999999998721
Q ss_pred -------------------eeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 160 -------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 160 -------------------a~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
-...|.||++|+|.++.+++|+ .|..|++|+.+++.
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~-~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGE-FITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCC-EecCCCeeEEEEeC
Confidence 0246999999999999999997 99999999988654
No 61
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.61 E-value=0.00016 Score=71.45 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=31.3
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
..|.||++|+|.++.+.+|+ .|..|++|+.|++.+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~-~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGE-FAAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCCC-CcCCCCeEEEEecCC
Confidence 36899999999999999997 999999999987643
No 62
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.57 E-value=0.00017 Score=62.33 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=36.1
Q ss_pred EEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 136 ARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
++|. ++|+.|++||+++.||++|+..+|.||.+|+|.++.
T Consensus 42 v~lp-~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN 81 (127)
T PRK01202 42 VELP-EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVN 81 (127)
T ss_pred EEcC-CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEh
Confidence 4433 679999999999999999999999999999999983
No 63
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.50 E-value=0.00015 Score=62.72 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=34.9
Q ss_pred cCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEee
Q 018410 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 177 (356)
Q Consensus 141 ~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v 177 (356)
++|+.|++||++|.||++|+..+|.||.+|+|.++..
T Consensus 45 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~ 81 (127)
T TIGR00527 45 EVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVND 81 (127)
T ss_pred CCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehH
Confidence 6799999999999999999999999999999998753
No 64
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.45 E-value=0.00032 Score=70.84 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=31.4
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
..|.||.+|+|..+.+++|+ .|..|++|+.|++.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~-~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGA-QISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCC-EeCCCCeEEEEEeCC
Confidence 47999999999999999997 999999999886643
No 65
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.42 E-value=0.00033 Score=68.66 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=30.8
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
..|.||.+|+|..+.+.+|+ .|..|++|+.|.+.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~-~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGT-MLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCC-CcCCCCeEEEEecC
Confidence 57999999999999999997 99999999988554
No 66
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.37 E-value=0.00047 Score=69.14 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=54.2
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccce--------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa-------------------------------------------------- 160 (356)
..|.|.++++++||.|++||+|+.|++.-.
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 459999999999999999999999977310
Q ss_pred ---------------------eEEEecCCCeEEEEEeecCCCeeeeCC--CEEEEEec
Q 018410 161 ---------------------TVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVE 195 (356)
Q Consensus 161 ---------------------~~ei~Ap~~G~I~ki~v~eG~~~V~vG--~~la~i~~ 195 (356)
-..|.||++|+|.+.++.+|+ .|..| ++|+.|.+
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~-~V~~g~~~~l~~i~~ 206 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGA-LVGQDQATPLTTVEQ 206 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCC-eecCCCCcceEEEEe
Confidence 136999999999999999997 89885 58887754
No 67
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.25 E-value=0.00093 Score=67.48 Aligned_cols=64 Identities=20% Similarity=0.308 Sum_probs=53.6
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccc---------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK--------------------------------------------------- 159 (356)
..|.|.++++++||.|++||+|++|+...
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 44999999999999999999999997521
Q ss_pred --------------------eeEEEecCCCeEEEEEeecCCCeeeeCCCE--EEEEec
Q 018410 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEV--IAITVE 195 (356)
Q Consensus 160 --------------------a~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~--la~i~~ 195 (356)
-...|.||++|+|.+..++.|+ .|..|++ |+.+.+
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~ 208 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQ 208 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCC-EECCCCCceEEEEEe
Confidence 0135999999999999999997 8999985 666644
No 68
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.21 E-value=0.00094 Score=67.03 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=54.2
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccc---------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK--------------------------------------------------- 159 (356)
..|.|.++++++||.|++||+|++|+..-
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999998630
Q ss_pred --------------------eeEEEecCCCeEEEEEeecCCCeeeeCCC--EEEEEec
Q 018410 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGE--VIAITVE 195 (356)
Q Consensus 160 --------------------a~~ei~Ap~~G~I~ki~v~eG~~~V~vG~--~la~i~~ 195 (356)
....|.||++|+|.+..+..|+ .|..|+ +|+.+.+
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~ 204 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGA-LVTANQADSLVTVQR 204 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCC-eECCCCCcceEEEEe
Confidence 1247999999999999999997 899985 6777644
No 69
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.18 E-value=0.00043 Score=50.16 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=26.2
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
..|.|.+|+|++||.|++||+|+++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 45999999999999999999999998754
No 70
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.16 E-value=0.00097 Score=48.33 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=30.0
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
++.|.+|.+|+|.++++.+|+ .|+.|++|+.+
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~-~VkkGd~L~~l 33 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQ-QVKKGDVLLVL 33 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCC-EEcCCCEEEEE
Confidence 467899999999999999998 89999999998
No 71
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.13 E-value=0.0014 Score=65.28 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=25.1
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEec
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
..|.|.+|++++||.|++||+|++++.
T Consensus 68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 68 VSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred cceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 349999999999999999999999986
No 72
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.12 E-value=0.0011 Score=56.93 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=31.5
Q ss_pred ccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 140 v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
.++|+.|++|++++.||++|++.++.||.+|+|.++.
T Consensus 39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 4669999999999999999999999999999999875
No 73
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.05 E-value=0.0014 Score=66.84 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=53.5
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccc---------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK--------------------------------------------------- 159 (356)
..|.|.++++++||.|++||+|++|....
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 55999999999999999999999996521
Q ss_pred --------------------eeEEEecCCCeEEEEEeecCCCeeeeCCC--EEEEEec
Q 018410 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGE--VIAITVE 195 (356)
Q Consensus 160 --------------------a~~ei~Ap~~G~I~ki~v~eG~~~V~vG~--~la~i~~ 195 (356)
....|.||++|+|..+.+..|+ .|..|+ +|+.|.+
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~-~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGN-QISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCc-eecCCCCceeEEEec
Confidence 0236999999999999999997 899984 6776644
No 74
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.99 E-value=0.0006 Score=65.54 Aligned_cols=26 Identities=42% Similarity=0.657 Sum_probs=20.1
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEec
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
..|.| +|++++||.|++||+|+++++
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 45999 999999999999999999987
No 75
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.86 E-value=0.0012 Score=57.45 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=35.1
Q ss_pred EccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 139 ~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
+.++|+.|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 45789999999999999999999999999999998764
No 76
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.82 E-value=0.003 Score=61.66 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=27.3
Q ss_pred EEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 163 ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
.|.||++|+|..+.+..|+ .|.. ++|+.|.+.
T Consensus 206 ~i~AP~dG~V~~~~~~~G~-~v~~-~~l~~i~~~ 237 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGE-VIGS-EGILEMGDT 237 (327)
T ss_pred EEECCCCeEEEEEecCCCC-ccCC-CccEEEecC
Confidence 5889999999999999997 7876 888887653
No 77
>PRK12784 hypothetical protein; Provisional
Probab=96.63 E-value=0.013 Score=46.54 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=56.4
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEecc-ceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETD-KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETd-Ka~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
-.|+|.+.++.+++.|-+.+.|+-|+++ +.-..|.--.+|.|.-+.+.+|+ .|..++.|+.+.
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq-~i~~dtlL~~~e 75 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQ-QIHTDTLLVRLE 75 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCc-eecCCcEEEEEe
Confidence 5689999999999999999999999984 44555888999999999999998 899999999873
No 78
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=96.57 E-value=0.0061 Score=57.18 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=30.6
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
.+.|.||++|+|..+.+..|+ .|..|++|+.+.+.
T Consensus 88 ~~~i~AP~dG~V~~~~~~~G~-~v~~g~~l~~i~~~ 122 (265)
T TIGR00999 88 YVEVRSPFDGYITQKSVTLGD-YVAPQAELFRVADL 122 (265)
T ss_pred eEEEECCCCeEEEEEEcCCCC-EeCCCCceEEEEcC
Confidence 346899999999999999997 89999999988653
No 79
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.31 E-value=0.015 Score=56.01 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=48.3
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|.+ +..++.||.|++||+|+.|+. .+|.||.+|+|..+ +.+|- .|..|.-|+.|
T Consensus 171 ~~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~-~V~~G~Ki~dI 226 (256)
T TIGR03309 171 ADGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGL-TVTEGLKIGDV 226 (256)
T ss_pred CCeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCC-CcCCCCEEEEE
Confidence 34555 559999999999999999975 79999999999975 57896 89999999987
No 80
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.90 E-value=0.03 Score=54.79 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=47.7
Q ss_pred EEEEEEEccCCCEEecCCeEEEEec---cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVET---DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVET---dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
+=+...+++.||.|++||.|++|=. +....+|.||.+|+|.-+ ...- .|..|+.|+.|
T Consensus 237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~--~~~p-~v~~G~~l~~i 297 (298)
T cd06253 237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTL--REYP-LVYEGSLVARI 297 (298)
T ss_pred CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEe--ecCC-eecCCceEEEe
Confidence 4566888999999999999999954 556788999999999754 4554 79999999876
No 81
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=95.88 E-value=0.016 Score=44.55 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=28.4
Q ss_pred EEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 163 ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|.||..|+|.++++++|+ .|+.|++|+.+
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd-~V~~g~~l~~v 33 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGD-QIGKGDTLVLL 33 (71)
T ss_pred EEeCCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 4899999999999999998 89999999977
No 82
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.85 E-value=0.014 Score=48.70 Aligned_cols=44 Identities=30% Similarity=0.371 Sum_probs=37.8
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEee
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 177 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v 177 (356)
|.-.+-+|++||.|++||.|++.+. -....|-||.+|+|..|.-
T Consensus 39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~ 82 (101)
T PF13375_consen 39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK 82 (101)
T ss_pred CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence 4446778999999999999999974 5688999999999998854
No 83
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=95.76 E-value=0.031 Score=56.21 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=47.0
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEec----cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVET----dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.+=+..++++.||.|++||.|++|=. +....+|.||.+|+|.- ....- .|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~-~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRR-FVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCc-cccCCCeEEEe
Confidence 35567899999999999999999833 44455679999999964 44564 79999999876
No 84
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.69 E-value=0.015 Score=44.39 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=24.8
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEe
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVE 156 (356)
.+|.|.+|++++||.|..||+|++||
T Consensus 45 ~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEecCCCEECCCCEEEEEC
Confidence 67999999999999999999999987
No 85
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.66 E-value=0.044 Score=53.26 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=45.4
Q ss_pred EEEEEEEccCCCEEecCCeEEEEec--cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVET--dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
+-+.++.++.||.|++||+|++|-. .....+|.||.+|+|.-+. ..- .|..|+.|+.|
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~-~v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLP-LVNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCC-ccCCCCEEEEe
Confidence 3445789999999999999999954 2234789999999996543 443 68999999875
No 86
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=95.54 E-value=0.018 Score=55.48 Aligned_cols=42 Identities=36% Similarity=0.550 Sum_probs=35.8
Q ss_pred EEEEccCCCEEecCCeEEEEeccce--eEEEecCCCeEEEEEeecCC
Q 018410 136 ARWLKKEGDKVSPGEVLCEVETDKA--TVEMECMEEGYLAKIVKGDG 180 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVETdKa--~~ei~Ap~~G~I~ki~v~eG 180 (356)
-+.+|+|||+|+.||+|++ ||- .+-+.||.+|+|.+|...+-
T Consensus 41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~r 84 (257)
T PF05896_consen 41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGER 84 (257)
T ss_pred ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCCC
Confidence 4888999999999999998 887 45588999999999876443
No 87
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.19 E-value=0.084 Score=52.03 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=46.6
Q ss_pred EEEEEEEccCCCEEecCCeEEEEec----cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVET----dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
+-+....++.||.|++||+|++|-. .....+|.||.+|+|.-+. ..- .|..|+.|+.+.
T Consensus 252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~-~v~~G~~l~~i~ 314 (316)
T cd06252 252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPG-LVRRGDCLAVLA 314 (316)
T ss_pred CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCC-ccCCCCEEEEEe
Confidence 4566889999999999999999854 3456789999999997443 332 588899998773
No 88
>PRK06748 hypothetical protein; Validated
Probab=94.88 E-value=0.047 Score=44.02 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=28.3
Q ss_pred EEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 163 ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-|.||..|+|.++++++|| .|+.|++|+.+
T Consensus 6 ~v~sp~~G~I~~w~vk~GD-~V~~gd~l~~I 35 (83)
T PRK06748 6 GVYSPCYGKVEKLFVRESS-YVYEWEKLALI 35 (83)
T ss_pred EEecCCcEEEEEEEeCCCC-EECCCCEEEEE
Confidence 3889999999999999998 89999999988
No 89
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=94.83 E-value=0.099 Score=51.98 Aligned_cols=58 Identities=31% Similarity=0.412 Sum_probs=46.4
Q ss_pred EEEEEEEccCCCEEecCCeEEEEec----cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVET----dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
+=+....++.||.|++||.|++|=. .....+|.||.+|+|.-+. ..- .|..|+.|+.+
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~-~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPG-LIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCC-ccCCCCEEEEe
Confidence 3455788999999999999999854 3356789999999997543 443 69999999875
No 90
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=94.82 E-value=0.043 Score=48.11 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.8
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
...|.||..|++.++++++|| .|+.||+||+|
T Consensus 70 ~~~V~SPm~Gtv~~~~V~vGd-~V~~Gq~l~Ii 101 (140)
T COG0511 70 GTQVTSPMVGTVYKPFVEVGD-TVKAGQTLAII 101 (140)
T ss_pred CceEecCcceEEEEEeeccCC-EEcCCCEEEEE
Confidence 456999999999999999998 89999999987
No 91
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=94.62 E-value=0.059 Score=39.57 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=27.4
Q ss_pred EecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 164 i~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|.||.+|+|.++++++|+ .|+.|++|+.+
T Consensus 2 v~a~~~G~v~~~~v~~G~-~v~~g~~l~~i 30 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGD-KVEAGQPLAVL 30 (67)
T ss_pred ccCCccEEEEEEEeCCCC-EECCCCEEEEE
Confidence 689999999999999997 89999999987
No 92
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=94.57 E-value=0.15 Score=51.30 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=30.6
Q ss_pred EEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 163 ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
.|.||.+|+|.+..+..|+ .|.+|++|+.+++.+
T Consensus 210 ~IrAP~dG~V~~~~v~~G~-~V~~G~~l~alVp~~ 243 (352)
T COG1566 210 VIRAPVDGYVTNLSVRVGQ-YVSAGTPLMALVPLD 243 (352)
T ss_pred EEECCCCceEEeecccCCC-eecCCCceEEEeccc
Confidence 4899999999999999997 999999999887643
No 93
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=94.35 E-value=0.13 Score=57.79 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=34.5
Q ss_pred ccccCchHHHHHHHHHHhhccCCceEEEEeEEEeccCCC
Q 018410 318 VDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMG 356 (356)
Q Consensus 318 ~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~evdvt~L~~ 356 (356)
+.+||++++++||+||..|+. +|++|...+|+++.|++
T Consensus 116 ~~~~LrG~a~aiAkNM~aSL~-vPtaTsvr~Ip~k~L~d 153 (1228)
T PRK12270 116 EVTPLRGAAAAVAKNMDASLE-VPTATSVRAVPAKLLID 153 (1228)
T ss_pred ceeecccHHHHHHHHHHhhhc-cCceeeeecccHHHHHH
Confidence 567999999999999999975 99999999999998763
No 94
>COG3608 Predicted deacylase [General function prediction only]
Probab=94.27 E-value=0.13 Score=51.43 Aligned_cols=60 Identities=20% Similarity=0.385 Sum_probs=48.8
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEec---cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVET---DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVET---dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
++-+++.+++.||.|++||.|+.|=. -+...||.|+.+|+|..+.. .+ .|+.|+.++++.
T Consensus 263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~-~~--~v~~Gdl~~~v~ 325 (331)
T COG3608 263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRS-LR--LVQPGDLLKVVG 325 (331)
T ss_pred CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEee-cc--ccCCCCeeeeec
Confidence 45568999999999999999998854 58899999999999987643 33 478887777664
No 95
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.14 E-value=0.08 Score=42.90 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=15.3
Q ss_pred EecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 164 i~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
|.||++|+|..+.++.|+ .|..|++|+.+.
T Consensus 2 i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~ 31 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGE-VVSAGQPLAEIV 31 (105)
T ss_pred EECCCCEEEEEEeCCCCC-EECCCCEEEEEE
Confidence 445555555555555554 455555555443
No 96
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.00 E-value=0.14 Score=49.82 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=41.4
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEec--cceeEEEecCCCeEEEEEeecCCCeeeeCCCEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVET--dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~l 190 (356)
.+-+.+.+++.||.|++||+|++|=. .....+|.||.+|+|.-+. ..- .|..|+.|
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~-~v~~G~~l 287 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATL-PVRKGDPL 287 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCC-ccCCCCcc
Confidence 34567888999999999999999822 3446789999999997543 332 46666665
No 97
>PRK07051 hypothetical protein; Validated
Probab=93.41 E-value=0.11 Score=40.97 Aligned_cols=26 Identities=31% Similarity=0.718 Sum_probs=24.6
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEe
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVE 156 (356)
.+|+|.+|++++||.|+.||+|++|+
T Consensus 54 ~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 54 AAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 67999999999999999999999985
No 98
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=92.94 E-value=0.19 Score=49.66 Aligned_cols=37 Identities=14% Similarity=0.314 Sum_probs=32.7
Q ss_pred EEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 154 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 154 eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|+.+ .+.|.++.+|+|.++++++|+ .|+.|++|+.+
T Consensus 43 ~v~~~--~v~v~~~v~G~V~~v~V~~G~-~VkkGq~L~~l 79 (346)
T PRK10476 43 YIDAD--VVHVASEVGGRIVELAVTENQ-AVKKGDLLFRI 79 (346)
T ss_pred EEEee--eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEE
Confidence 44444 688999999999999999998 89999999998
No 99
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=92.83 E-value=0.1 Score=49.52 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=23.5
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
..|.++..|+|.+|++++|+ .|+.|++|+.+.
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~-~VkkGq~L~~LD 33 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQ-RVKKGQVLARLD 33 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTE-EE-TTSECEEE-
T ss_pred EEEeCCCCeEEEEEEccCcC-EEeCCCEEEEEE
Confidence 57899999999999999997 999999999983
No 100
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=92.47 E-value=0.15 Score=51.45 Aligned_cols=40 Identities=35% Similarity=0.500 Sum_probs=34.2
Q ss_pred EEEccCCCEEecCCeEEEEeccce--eEEEecCCCeEEEEEeecC
Q 018410 137 RWLKKEGDKVSPGEVLCEVETDKA--TVEMECMEEGYLAKIVKGD 179 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVETdKa--~~ei~Ap~~G~I~ki~v~e 179 (356)
...|++||.|++||+|+| ||- .+-+.||.+|+|..|...+
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence 457899999999999998 777 5668999999999987533
No 101
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=92.46 E-value=0.23 Score=48.38 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=30.3
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.+.|.++.+|+|.++++++|+ .|+.|++|+.+
T Consensus 42 ~~~v~a~~~G~V~~i~v~~G~-~V~kGq~L~~l 73 (334)
T TIGR00998 42 QLQVSSQVSGSVIEVNVDDTD-YVKQGDVLVRL 73 (334)
T ss_pred eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEE
Confidence 678999999999999999998 89999999998
No 102
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=92.46 E-value=0.2 Score=51.93 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=36.5
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEee
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 177 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v 177 (356)
|..-+-+|++||+|+.||+|++-... ..+.+-||.+|+|..|..
T Consensus 38 G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 38 GMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 44567899999999999999984432 478899999999999954
No 103
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=92.39 E-value=0.24 Score=43.13 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=29.9
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
...|.||..|+|.++++.+|+ .|+.|++|+.+
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd-~V~~Gq~L~~l 92 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGD-QVTENQPLLIL 92 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 467999999999999999998 89999999987
No 104
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.06 E-value=0.24 Score=48.33 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=34.1
Q ss_pred EEeccceeEEEecCCC---eEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 154 EVETDKATVEMECMEE---GYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 154 eVETdKa~~ei~Ap~~---G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.|+...-.+.|.++.+ |+|.+|++++|+ .|+.|++|+.|.
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~-~V~~G~~L~~ld 48 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGD-RVQAGQVLAELD 48 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCC-EecCCcEEEEec
Confidence 4555555678899999 999999999998 899999999983
No 105
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=91.91 E-value=1.8 Score=43.82 Aligned_cols=37 Identities=32% Similarity=0.617 Sum_probs=30.5
Q ss_pred ceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 118 ~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
.+.|.+|. -..|+|.+++|++||+|+.|+.|+.|++.
T Consensus 113 K~tv~V~s----P~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 113 KTTVEVPS----PASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred ceeeeccC----CCcceeeEEecCCCCcccCCceeEEecCC
Confidence 34566663 34599999999999999999999999876
No 106
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.76 E-value=0.29 Score=43.70 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=29.0
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|.||..|+|.++++++|| .|..||+|+.+
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd-~V~~Gq~l~~i 115 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQ-QVKVGQGLLIL 115 (153)
T ss_pred CEEECCCCeEEEEEEeCCCC-EEcCCCEEEEE
Confidence 46899999999999999998 89999999987
No 107
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=91.66 E-value=0.29 Score=43.67 Aligned_cols=46 Identities=30% Similarity=0.400 Sum_probs=35.1
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEE-EecCCCeEEEEEe
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIV 176 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~e-i~Ap~~G~I~ki~ 176 (356)
.||..+-..+.+||.|.+||.|+-|.|-|-.+- +.||.+|+|.=+.
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~ 133 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI 133 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence 567778899999999999999999999999765 9999999997554
No 108
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=91.62 E-value=0.14 Score=48.53 Aligned_cols=28 Identities=32% Similarity=0.563 Sum_probs=20.6
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
..|.|.+.+|++||.|++||+|++|+.-
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--H
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEee
Confidence 4599999999999999999999999853
No 109
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=91.32 E-value=0.42 Score=45.75 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=32.8
Q ss_pred EEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 154 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 154 eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.|+..+ +..|.+|.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 20 ~v~~~~-~~~v~a~~~G~V~~i~v~~G~-~V~kG~~L~~l~ 58 (322)
T TIGR01730 20 SLEAVD-EADLAAEVAGKITKISVREGQ-KVKKGQVLARLD 58 (322)
T ss_pred EEEEee-EEEEEccccEEEEEEEcCCCC-EEcCCCEEEEEC
Confidence 344333 467999999999999999997 899999999883
No 110
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=91.11 E-value=0.6 Score=46.55 Aligned_cols=55 Identities=13% Similarity=0.238 Sum_probs=39.5
Q ss_pred EEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-+.++.|+....=..-+.|+... .+.|.++.+|+|.++++++|+ .|+.|++|+.+
T Consensus 38 ~~~v~~~~~~~~i~~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~-~V~kG~~L~~l 92 (370)
T PRK11578 38 TLIVRPGDLQQSVLATGKLDALR-KVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVI 92 (370)
T ss_pred EEEEEeeeeEEEEEEEEEEEeee-EEEEecccceEEEEEEcCCCC-EEcCCCEEEEE
Confidence 33444444332222344565543 458999999999999999998 89999999988
No 111
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=91.07 E-value=0.43 Score=45.82 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=26.2
Q ss_pred EEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 154 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 154 eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.|+. -...|.++.+|+| ++++.+|+ .|+.|++|+.+.
T Consensus 16 ~v~~--~~~~v~~~~~G~v-~~~v~~G~-~V~kG~~L~~ld 52 (328)
T PF12700_consen 16 TVEP--NEVSVSAPVSGRV-SVNVKEGD-KVKKGQVLAELD 52 (328)
T ss_dssp EEEE--SEEEE--SS-EEE-EE-S-TTS-EEETT-EEEEEE
T ss_pred EEEE--EEEEEECCCCEEE-EEEeCCcC-EECCCCEEEEEE
Confidence 5554 4567899999999 99999998 899999999984
No 112
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=91.07 E-value=0.33 Score=50.41 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=35.8
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
|...+-+|++||+|+.||.|++-... ....+-||.+|+|..|.
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 44467899999999999999974433 46889999999999994
No 113
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=90.94 E-value=0.3 Score=37.87 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=25.3
Q ss_pred EEecCCCeEEEE------EeecCCCeeeeCCCEEEEE
Q 018410 163 EMECMEEGYLAK------IVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 163 ei~Ap~~G~I~k------i~v~eG~~~V~vG~~la~i 193 (356)
+|.+|.-|.+.+ +++++|+ .|+.|++|+.+
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~-~V~~G~~l~~i 37 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGD-KVKKGDPLAEI 37 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTE-EESTTSEEEEE
T ss_pred EEECCCCccEEEecceeEEEECCCC-EEEcCceEEEE
Confidence 567777776555 9999997 89999999988
No 114
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=90.90 E-value=0.56 Score=48.36 Aligned_cols=39 Identities=10% Similarity=0.227 Sum_probs=33.3
Q ss_pred EEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 154 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 154 eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|..+.-...|.++..|+|.+|+|++|+ .|+.|++|+.+
T Consensus 52 ~v~p~~~~~~vq~~~~G~v~~i~V~eG~-~V~~G~~L~~l 90 (457)
T TIGR01000 52 TIEPAKILSKIQSTSNNAIKENYLKENK-FVKKGDLLVVY 90 (457)
T ss_pred EEEecCceEEEEcCCCcEEEEEEcCCCC-EecCCCEEEEE
Confidence 4444444568899999999999999998 89999999998
No 115
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=90.42 E-value=0.3 Score=50.30 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=35.3
Q ss_pred EEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 134 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 134 ~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
.-.+-+|++||+|+.||.|++.+ ......|-||.+|+|.+|.
T Consensus 41 ~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 41 APAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 33567899999999999999973 3358899999999999875
No 116
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=90.31 E-value=0.68 Score=47.27 Aligned_cols=54 Identities=20% Similarity=0.189 Sum_probs=41.2
Q ss_pred EccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 139 ~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.++.|+.-..=+....|+.. -.+.|.++.+|+|.+|++++|+ .|+.|++|+.|.
T Consensus 66 ~v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~-~VkkGq~La~ld 119 (415)
T PRK11556 66 TATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQ-QVKAGDLLAEID 119 (415)
T ss_pred EEEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCC-EecCCCEEEEEC
Confidence 33444433333455677764 5678999999999999999998 899999999983
No 117
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.24 E-value=0.48 Score=47.22 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=34.1
Q ss_pred EEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 154 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 154 eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.|........|.++.+|+|.+++|.+|+ .|+.|++|+.+.
T Consensus 36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~-~V~kG~~L~~ld 75 (423)
T TIGR01843 36 KVVPSGNVKVVQHLEGGIVREILVREGD-RVKAGQVLVELD 75 (423)
T ss_pred EEEECCCeeecccCCCcEEEEEEeCCCC-EecCCCeEEEEc
Confidence 4556666777889999999999999997 899999999883
No 118
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=90.05 E-value=0.28 Score=38.62 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEEEEccCCCEEecCCeEEEEecc
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
+.=+.++++.||.|++||+||+|=++
T Consensus 31 ~vGi~l~~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 31 AVGIELHKKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp T-EEEESS-TTSEEBTTSEEEEEEES
T ss_pred CcCeEecCcCcCEECCCCeEEEEEcC
Confidence 34468999999999999999998554
No 119
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=90.03 E-value=0.56 Score=54.02 Aligned_cols=59 Identities=10% Similarity=0.201 Sum_probs=45.3
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|.+.+..++.++.+..++.....+.. -...|.||..|+|.++++++|| .|+.|++|+++
T Consensus 1047 Gq~reV~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd-~V~~Gd~L~~i 1105 (1143)
T TIGR01235 1047 GQPRRIKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQ-AVNKGDPLVVL 1105 (1143)
T ss_pred CeEEEEEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCC-EeCCCCEEEEE
Confidence 35566677777777766655443322 2356999999999999999998 89999999987
No 120
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=89.94 E-value=0.99 Score=44.06 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=30.1
Q ss_pred EEEEEEEccCCCEEecCCeEEEEec--cceeEEEecCCCeEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKI 175 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVET--dKa~~ei~Ap~~G~I~ki 175 (356)
+=|.+..++.||.|++||.|++|-. .....++.||.+|+|.-+
T Consensus 239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 3455777888888888888888733 112456788888888644
No 121
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=89.75 E-value=0.81 Score=45.98 Aligned_cols=52 Identities=13% Similarity=0.093 Sum_probs=41.0
Q ss_pred ccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 140 v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
++.|+....-+....|+... ..+|.++.+|+|.++.+++|+ .|+.|++|+.|
T Consensus 41 v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~-~VkkGqvLa~l 92 (385)
T PRK09859 41 LSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGD-KVNQGDSLYQI 92 (385)
T ss_pred eEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcC-EecCCCEEEEE
Confidence 34444444444566777654 678999999999999999998 89999999998
No 122
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=89.68 E-value=0.62 Score=47.37 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=30.3
Q ss_pred eeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 160 a~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
-...|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 57 ~~~~v~a~~~G~V~~i~V~eG~-~V~kGq~L~~l~ 90 (421)
T TIGR03794 57 GVDTIQSPGSGVVIDLDVEVGD-QVKKGQVVARLF 90 (421)
T ss_pred ceeEEECCCCeEEEEEECCCcC-EECCCCEEEEEC
Confidence 3458999999999999999997 899999999883
No 123
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=89.60 E-value=0.85 Score=49.92 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=35.0
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
|.-.+-+|++||+|.+||+|++-.. -..+.|-||.+|+|..|.
T Consensus 46 G~~~~~~V~~GD~V~~GQ~i~~~~~-~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 46 GAEGELCVKVGDRVLKGQPLTQGDG-RMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCcceeCcCCEEcCCCEeeecCC-CceeEEeCCCCeEEeeec
Confidence 3445678999999999999997532 246889999999999875
No 124
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=89.52 E-value=0.52 Score=46.23 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=30.4
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.+.|.++..|+|.++++++|+ .|+.|++|+.+
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd-~V~kG~~L~~l 74 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGD-AVKAGQVLGEL 74 (331)
T ss_pred EEEeecccCcEEEEEEcCCCC-EEcCCCEEEEE
Confidence 568999999999999999998 89999999998
No 125
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=88.98 E-value=0.98 Score=45.34 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=40.8
Q ss_pred EccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 139 ~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.++.++.-..-.....|+.+ -..+|.++.+|+|.++++++|+ .|+.|++|+.+
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd-~VkkGq~La~l 94 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQ-EVKQGAVLFRI 94 (385)
T ss_pred EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCC-EEcCCCEEEEE
Confidence 34444433333455677765 3578999999999999999998 89999999998
No 126
>PF13437 HlyD_3: HlyD family secretion protein
Probab=88.75 E-value=1.7 Score=35.06 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=25.6
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
.+|.|..|.+++|+.|.+|++|++|...
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEcc
Confidence 5699999999999999999999999753
No 127
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=88.72 E-value=0.66 Score=47.00 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=30.6
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.+.|.++.+|+|.++++++|+ .|+.|++|+.|
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd-~VkkGqvL~~L 92 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTD-FVKEGDVLVTL 92 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCC-EECCCCEEEEE
Confidence 788999999999999999998 89999999998
No 128
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=88.64 E-value=0.69 Score=45.40 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=29.6
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
+.|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd-~VkkGqvLa~Ld 79 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQ-LVKKGQVLFTID 79 (310)
T ss_pred EEEccCCceEEEEEEeCCcC-EEcCCCEEEEEC
Confidence 56999999999999999998 899999999983
No 129
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=88.30 E-value=0.42 Score=47.62 Aligned_cols=30 Identities=33% Similarity=0.636 Sum_probs=26.9
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccce
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa 160 (356)
..|.|.+|+|++||.|++||+|+.++....
T Consensus 50 ~~G~v~~i~V~eG~~V~kG~~L~~ld~~~~ 79 (423)
T TIGR01843 50 EGGIVREILVREGDRVKAGQVLVELDATDV 79 (423)
T ss_pred CCcEEEEEEeCCCCEecCCCeEEEEccchh
Confidence 459999999999999999999999987554
No 130
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=88.12 E-value=0.86 Score=40.63 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.9
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEe
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVE 156 (356)
-.+|+|.+|+++.||.|..||+|+.|+
T Consensus 129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 129 DKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 367999999999999999999999985
No 131
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=88.09 E-value=0.54 Score=42.02 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.9
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEe
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVE 156 (356)
-..|+|.+|+++.||.|..||+|++|+
T Consensus 130 ~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 130 EVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 367999999999999999999999985
No 132
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=87.66 E-value=1.4 Score=42.29 Aligned_cols=58 Identities=21% Similarity=0.351 Sum_probs=45.7
Q ss_pred EEEEEEEccCCCEEecCCeE--EEEe-c-cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVL--CEVE-T-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L--~eVE-T-dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
+-+..+.++.||.|++||+| .++- . +-...+|.||.+|+|. .....- .|..|+.|+.+
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~-~v~~G~~l~~v 289 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESP-YVEQGDALAKV 289 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSS-ECTTTEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCccc-ccCCCCeEEEE
Confidence 34569999999999999999 5442 2 2335689999999995 666775 79999999876
No 133
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=86.78 E-value=0.74 Score=48.08 Aligned_cols=29 Identities=34% Similarity=0.573 Sum_probs=26.6
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
..+|+|.+|++++||.|..|++||.|+.+
T Consensus 140 p~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 140 PASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred CCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 46799999999999999999999999854
No 134
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=86.77 E-value=0.63 Score=37.33 Aligned_cols=22 Identities=50% Similarity=1.079 Sum_probs=18.4
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++||.|++||+|++++-
T Consensus 47 v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 47 VEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEeCCCCCccCCcEEEEEEe
Confidence 5799999999999999999975
No 135
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=86.70 E-value=0.44 Score=42.99 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=35.1
Q ss_pred cCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeec
Q 018410 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178 (356)
Q Consensus 141 ~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~ 178 (356)
++|-.|.+||.++-||+=|+.-+|.+|.+|.|.+|..+
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~ 126 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEK 126 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccc
Confidence 67889999999999999999999999999999988643
No 136
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=85.94 E-value=0.77 Score=46.72 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=25.5
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEec
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
..|.|.+.+|++||.|++||+|+.|++
T Consensus 65 ~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 65 GSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred CCeEEEEEECCCcCEECCCCEEEEECc
Confidence 569999999999999999999999987
No 137
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=85.37 E-value=0.92 Score=44.10 Aligned_cols=26 Identities=35% Similarity=0.472 Sum_probs=24.1
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEe
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVE 156 (356)
.+|+|.+|++++||.|..||+|++||
T Consensus 248 ~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 248 QSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CCeEEEEEecCCCCEeCCCCEEEEec
Confidence 47899999999999999999999986
No 138
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=85.34 E-value=1.4 Score=42.67 Aligned_cols=35 Identities=26% Similarity=0.536 Sum_probs=30.1
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
.+|..| .+|+|.++++++||.|..|++|+.|+.+.
T Consensus 46 ~~~~a~------~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 46 NEVEAP------AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred EEEecC------CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 355555 57999999999999999999999998765
No 139
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=85.32 E-value=1.3 Score=44.82 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=33.9
Q ss_pred EEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 153 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 153 ~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|+. .-.++|.+..+|+|.++.+++|+ .|+.||+|+.|
T Consensus 58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd-~VkkGqvLa~l 96 (397)
T PRK15030 58 GRTSA-YRIAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQI 96 (397)
T ss_pred EEEEE-EEEEEEEecCcEEEEEEEcCCCC-EecCCCEEEEE
Confidence 45654 34678999999999999999998 89999999998
No 140
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=84.51 E-value=1 Score=47.52 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=35.8
Q ss_pred EEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 136 ARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
...+|++||+|.+||+|.+=+. -.+.+-||.+|+|.+|.
T Consensus 45 ~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 45 GILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 5778999999999999998776 88899999999999997
No 141
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=84.48 E-value=2.2 Score=43.47 Aligned_cols=43 Identities=12% Similarity=0.214 Sum_probs=35.5
Q ss_pred eEEEEeccc-eeEEEecCCCeEEEEEe-ecCCCeeeeCCCEEEEEe
Q 018410 151 VLCEVETDK-ATVEMECMEEGYLAKIV-KGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 151 ~L~eVETdK-a~~ei~Ap~~G~I~ki~-v~eG~~~V~vG~~la~i~ 194 (356)
..+.|+.|. ....|.++.+|+|.+++ +.+|+ .|+.||+|+.+.
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd-~VkkGq~La~l~ 156 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLT 156 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCC-EECCCCEEEEEe
Confidence 345666543 35789999999999998 89998 899999999984
No 142
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.35 E-value=1 Score=46.50 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=25.5
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
..|.|.+.+|++||.|++||+|+.++..
T Consensus 66 ~~G~v~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 66 SNNAIKENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred CCcEEEEEEcCCCCEecCCCEEEEECch
Confidence 5589999999999999999999999763
No 143
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=84.01 E-value=3.1 Score=39.37 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=34.1
Q ss_pred eEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 151 VLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 151 ~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
....++. .-..++.++..|.|.+|++++|+ .|+.|++|+.+.+
T Consensus 57 ~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~-~Vk~Gq~L~~ld~ 99 (372)
T COG0845 57 APGRVEA-TRSVEVLARVAGIVAEILVKEGD-RVKKGQLLARLDP 99 (372)
T ss_pred eeeEEEe-eeeeeEecccccEEEEEEccCCC-eecCCCEEEEECC
Confidence 3344554 34447888899999999999998 8999999998833
No 144
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=83.57 E-value=3 Score=37.97 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=15.3
Q ss_pred eecCCCeeeeCCCEEEEE
Q 018410 176 VKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 176 ~v~eG~~~V~vG~~la~i 193 (356)
++++|| .|+.||+|+.+
T Consensus 107 ~Vk~Gd-~Vk~G~~L~~~ 123 (169)
T PRK09439 107 IAEEGQ-RVKVGDPIIEF 123 (169)
T ss_pred EecCCC-EEeCCCEEEEE
Confidence 789997 89999999987
No 145
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=82.76 E-value=1.7 Score=46.82 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=29.1
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-+|.||..|+|.++++++|| .|+.|++|+++
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd-~V~~Gq~L~~i 556 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGD-EVKAGQAVLVI 556 (596)
T ss_pred CeEecCcceEEEEEEeCCCC-EeCCCCEEEEE
Confidence 36999999999999999998 89999999987
No 146
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=82.49 E-value=1.3 Score=41.97 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=25.7
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEec
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 569999999999999999999999987
No 147
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=82.22 E-value=4 Score=35.26 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=16.6
Q ss_pred EEEeecCCCeeeeCCCEEEEE
Q 018410 173 AKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 173 ~ki~v~eG~~~V~vG~~la~i 193 (356)
-++++++|| .|+.|++|+.+
T Consensus 82 F~~~vk~Gd-~V~~G~~l~~~ 101 (124)
T cd00210 82 FTSHVEEGQ-RVKQGDKLLEF 101 (124)
T ss_pred eEEEecCCC-EEcCCCEEEEE
Confidence 345789997 89999999886
No 148
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=82.15 E-value=2.8 Score=36.59 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.0
Q ss_pred eecCCCeeeeCCCEEEEE
Q 018410 176 VKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 176 ~v~eG~~~V~vG~~la~i 193 (356)
++++|+ .|+.|++|+.+
T Consensus 89 ~v~~G~-~V~~G~~L~~~ 105 (132)
T PF00358_consen 89 LVKEGD-KVKAGQPLIEF 105 (132)
T ss_dssp SS-TTS-EE-TTEEEEEE
T ss_pred EEeCCC-EEECCCEEEEE
Confidence 778997 89999999876
No 149
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=81.93 E-value=3.6 Score=38.21 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=41.0
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEE-EE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI-AI 192 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~l-a~ 192 (356)
+.|.. ++++|+.|++||.+.-++-- .++++--|.+ .++.+.+|+ .|..|+.| ++
T Consensus 150 r~I~~-~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~-kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVC-YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQ-KVVAGETVLAR 204 (206)
T ss_pred cEEEE-eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCC-EEEcccEEEEE
Confidence 45544 46899999999999999876 4566555654 268899998 89999854 44
No 150
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=81.52 E-value=3.2 Score=37.75 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.5
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
|+--+++|++||+|++||+|+++.-+.
T Consensus 101 G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 101 GEGFKRIAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred CCceEEEecCCCEEeCCCEEEEEcHHH
Confidence 556799999999999999999997644
No 151
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=80.92 E-value=2.2 Score=45.86 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=29.3
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-.|.||..|.|.++++++|| .|+.|++|+++
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd-~V~~G~~l~~i 548 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQ-TVAEGEVLLIL 548 (582)
T ss_pred CeEeCCccEEEEEEEeCCCC-EECCCCEEEEE
Confidence 47999999999999999998 89999999987
No 152
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=80.81 E-value=4.2 Score=37.24 Aligned_cols=52 Identities=27% Similarity=0.401 Sum_probs=40.2
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~l 190 (356)
..|..| +++|+.|++||.+.-++-- .++++--|.+ .++.+++|+ .|..|+.|
T Consensus 130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~-~V~~G~tl 181 (189)
T TIGR00164 130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGE-KVTAGETV 181 (189)
T ss_pred cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCC-EEEeceEE
Confidence 355444 5899999999999999876 5566666655 267899998 89999976
No 153
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=79.91 E-value=5.2 Score=34.47 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=16.9
Q ss_pred EEEeecCCCeeeeCCCEEEEE
Q 018410 173 AKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 173 ~ki~v~eG~~~V~vG~~la~i 193 (356)
-+.++++|| .|+.|++|+.+
T Consensus 82 F~~~v~~Gd-~V~~G~~l~~~ 101 (121)
T TIGR00830 82 FTSHVEEGQ-RVKKGDPLLEF 101 (121)
T ss_pred eEEEecCCC-EEcCCCEEEEE
Confidence 346889998 89999999987
No 154
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=79.04 E-value=2.3 Score=43.90 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=36.0
Q ss_pred ccccCchHHHHHHHHHHhhccCCceEEEEeEEEeccCC
Q 018410 318 VDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (356)
Q Consensus 318 ~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~evdvt~L~ 355 (356)
+.+||++|||+||+||++||++|||||++.|+|||+|+
T Consensus 190 ~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~ 227 (418)
T PTZ00144 190 TRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALM 227 (418)
T ss_pred eeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHH
Confidence 45799999999999999999999999999999999886
No 155
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=78.47 E-value=2.7 Score=30.00 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.2
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEV 155 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eV 155 (356)
..|.+.++++++|+.|..|++|++|
T Consensus 50 ~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 50 AAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 4577999999999999999999875
No 156
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=78.42 E-value=2.6 Score=43.26 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=27.4
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
..+|+|.++++++||.|..|++|++|+++.
T Consensus 51 ~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 51 PAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 477999999999999999999999998754
No 157
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=78.41 E-value=2.9 Score=45.06 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.8
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
...|.||..|+|.++++++|+ .|+.|++|+.+
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd-~V~~Gd~l~~i 555 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQ-TVAEGDVLLIL 555 (593)
T ss_pred CceEECCccEEEEEEEeCCCC-EeCCCCEEEEE
Confidence 447999999999999999998 89999999987
No 158
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=78.22 E-value=2.8 Score=31.66 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=23.2
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEV 155 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eV 155 (356)
.+|+|.+|+++.|+.|..|+.|+.|
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 6799999999999999999999875
No 159
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=78.04 E-value=2 Score=37.09 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=23.3
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
|+--++++++||+|++||+|+++.-+.
T Consensus 79 g~gF~~~vk~Gd~V~~G~~l~~~D~~~ 105 (124)
T cd00210 79 GEGFTSHVEEGQRVKQGDKLLEFDLPA 105 (124)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 556799999999999999999987543
No 160
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=77.88 E-value=2.8 Score=43.01 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=27.2
Q ss_pred CCceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 129 s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
...+|.|.+|++++||.|..|++|+.|+.+
T Consensus 48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 48 SPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 347799999999999999999999999865
No 161
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=77.60 E-value=4.5 Score=37.21 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=41.9
Q ss_pred EEEEEEEc-cCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEE
Q 018410 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (356)
Q Consensus 133 g~I~~W~v-~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~ 192 (356)
+.|+-|.. ++|+.|++||.+.-++- -.++.+--|.+-+. ++.++.|+ .|..|+.|++
T Consensus 145 ~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~-~V~~Ge~i~~ 202 (202)
T PF02666_consen 145 GSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQ-KVRAGETIGY 202 (202)
T ss_pred ceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCC-EEEeeeEEeC
Confidence 55655554 69999999999999986 44555444433333 78999997 8999999863
No 162
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=76.70 E-value=2.3 Score=36.67 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.1
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
|+--++++++||+|++||+|+++.-+.
T Consensus 79 G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 79 GEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 555799999999999999999987543
No 163
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.60 E-value=5 Score=35.45 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=39.1
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEE-EecCCCeEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKI 175 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~e-i~Ap~~G~I~ki 175 (356)
.||-++.-.+..|+.|.+||+++-|.|-|-.+- +++|.+|++.-|
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 678888889999999999999999999998776 789999998744
No 164
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=76.42 E-value=3.2 Score=42.70 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=27.1
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
..+|.|.+|++++||.|..|++|++|+++.
T Consensus 47 ~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 47 RYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred CCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 467999999999999999999999998654
No 165
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=76.32 E-value=6 Score=35.64 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=17.9
Q ss_pred eEEEEEeecCCCeeeeCCCEEEEE
Q 018410 170 GYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 170 G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|.--+.++++|| .|+.||+|..+
T Consensus 86 GegF~~~v~~Gd-~Vk~Gd~Li~f 108 (156)
T COG2190 86 GEGFESLVKEGD-KVKAGDPLLEF 108 (156)
T ss_pred CcceEEEeeCCC-EEccCCEEEEE
Confidence 333344899998 89999999876
No 166
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=75.93 E-value=3.8 Score=44.11 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=29.9
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
...|.||..|+|.++.+++|+ .|+.|++|+.+
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd-~V~~Gq~L~~i 553 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGD-KVKAGDTVLVL 553 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCC-EECCCCEEEEE
Confidence 367999999999999999998 89999999987
No 167
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=75.63 E-value=11 Score=34.09 Aligned_cols=28 Identities=43% Similarity=0.502 Sum_probs=24.2
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccce
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKA 160 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa 160 (356)
|+--+-++++||+|++||.|+++.-|+.
T Consensus 86 GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 86 GEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 6677899999999999999999976543
No 168
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=75.02 E-value=3.7 Score=42.13 Aligned_cols=39 Identities=31% Similarity=0.561 Sum_probs=31.8
Q ss_pred ceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccce
Q 018410 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (356)
Q Consensus 118 ~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa 160 (356)
...+.+| +..+|+|.+.++++||.|..|++|+.|++.-.
T Consensus 43 Ka~~EV~----ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~ 81 (404)
T COG0508 43 KATMEVP----APDAGVLAKILVEEGDTVPVGAVIARIEEEGA 81 (404)
T ss_pred ceeEEec----CCCCeEEEEEeccCCCEEcCCCeEEEEecCCC
Confidence 3445555 34679999999999999999999999998644
No 169
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=74.46 E-value=1.8 Score=37.81 Aligned_cols=28 Identities=43% Similarity=0.552 Sum_probs=21.1
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
+|+--+|++++||+|++||+|+++.-++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 3555799999999999999999987654
No 170
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=73.58 E-value=4.7 Score=43.59 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=24.2
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccce
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa 160 (356)
+|+--+.+|++||+|++||+|+++.-++.
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i 570 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKI 570 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHH
Confidence 35567999999999999999999976543
No 171
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=72.82 E-value=5.8 Score=40.14 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=29.4
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.+.|-+..+|+|.++.+.+++ .|+.|++|+.|
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq-~Vk~Gd~L~~i 84 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQ-LVKKGDVLFRI 84 (352)
T ss_pred EEEEcCcCceEEEEEEecCCC-EecCCCeEEEE
Confidence 356889999999999999997 89999999998
No 172
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=70.36 E-value=5.5 Score=46.39 Aligned_cols=31 Identities=19% Similarity=0.332 Sum_probs=29.0
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|.||..|.|.++++++|| .|+.|++|+++
T Consensus 1133 ~~v~a~~~G~v~~~~v~~Gd-~V~~Gd~l~~i 1163 (1201)
T TIGR02712 1133 EQVESEYAGNFWKVLVEVGD-RVEAGQPLVIL 1163 (1201)
T ss_pred cEEeCCceEEEEEEEeCCCC-EECCCCEEEEE
Confidence 44999999999999999998 89999999987
No 173
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=70.10 E-value=5.6 Score=42.65 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=28.7
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-.+.||..|+|..+.|++|+ .|..|++|+++
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~-~V~~G~~lvvl 606 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQ-EVSAGDLLVVL 606 (645)
T ss_pred CceecCCCceEEEEEecCCC-EecCCCeEEEe
Confidence 45899999999999999997 89999999987
No 174
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=69.29 E-value=6.2 Score=40.90 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.9
Q ss_pred CceEEEEEEEccCCCE-EecCCeEEEEeccc
Q 018410 130 MQEGNIARWLKKEGDK-VSPGEVLCEVETDK 159 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~-V~~Gd~L~eVETdK 159 (356)
..+|+|.+|++++||. |..|++|++|+.+.
T Consensus 48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 3669999999999999 99999999998654
No 175
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=68.08 E-value=5.2 Score=39.24 Aligned_cols=24 Identities=50% Similarity=0.988 Sum_probs=21.7
Q ss_pred EEEEEccCCCEEecCCeEEEEecc
Q 018410 135 IARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 135 I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
-..|++++||.|++||+|++++-+
T Consensus 65 ~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 65 EIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEEEEcCCCCEeCCCCEEEEEecc
Confidence 368999999999999999999873
No 176
>PRK12999 pyruvate carboxylase; Reviewed
Probab=67.48 E-value=6.8 Score=45.43 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=29.3
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|.||..|+|.++++++|+ .|+.||+|+.+
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd-~V~~G~~L~~l 1107 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGD-EVKAGDPLAVI 1107 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCC-EECCCCEEEEE
Confidence 56999999999999999998 89999999987
No 177
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=66.08 E-value=12 Score=40.68 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.1
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
|+--++++++||+|++||+|+++.-++
T Consensus 559 G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 559 GKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 455699999999999999999997643
No 178
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=65.68 E-value=12 Score=39.60 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=35.9
Q ss_pred EEEeccceeEEEecCCCeEEEEE------------------------eecCCCeeeeCCCEEEEEec
Q 018410 153 CEVETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 153 ~eVETdKa~~ei~Ap~~G~I~ki------------------------~v~eG~~~V~vG~~la~i~~ 195 (356)
..+..-+.+.+|.|+.+|+|..| +++.|| .|+.|++|+.|..
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd-~V~~Gd~l~~i~a 470 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGD-QVKKGDPLYTIYA 470 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCC-EecCCCeEEEEEC
Confidence 44555688999999999999987 788997 8999999999863
No 179
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=64.63 E-value=8 Score=40.50 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=26.7
Q ss_pred CCceEEEEEEEccCCC-EEecCCeEEEEeccc
Q 018410 129 TMQEGNIARWLKKEGD-KVSPGEVLCEVETDK 159 (356)
Q Consensus 129 s~~eg~I~~W~v~~Gd-~V~~Gd~L~eVETdK 159 (356)
+..+|+|.+|++++|+ .|+.|++|++|+.+.
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~ 81 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEEG 81 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccCC
Confidence 3468999999999995 799999999998653
No 180
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=63.76 E-value=20 Score=38.33 Aligned_cols=70 Identities=30% Similarity=0.376 Sum_probs=48.2
Q ss_pred EecCCCCCCCceEEEEEEE----ccCCCEEecCCeEEEE-eccce-eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 121 IGMPSLSPTMQEGNIARWL----KKEGDKVSPGEVLCEV-ETDKA-TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 121 i~~P~lg~s~~eg~I~~W~----v~~Gd~V~~Gd~L~eV-ETdKa-~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
|.+|.|.-. .+|. +++||.|..||+|..| ||.-. -+-|+.+..|.+..+.+.+|+ -.+.++|+.+.
T Consensus 105 v~~p~Ldr~------~kW~F~P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~--ytv~d~ia~v~ 176 (588)
T COG1155 105 LNPPALDRK------KKWDFVPAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE--YTVEDVIATVS 176 (588)
T ss_pred CCCCCCCcc------cccccccccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC--ceeeEEEEEEe
Confidence 446666532 3553 4799999999999987 55422 333566666666667878895 89999999884
Q ss_pred ccCC
Q 018410 195 EEEE 198 (356)
Q Consensus 195 ~~~~ 198 (356)
.+.+
T Consensus 177 ~~~g 180 (588)
T COG1155 177 TEGG 180 (588)
T ss_pred cCCC
Confidence 4433
No 181
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=63.29 E-value=16 Score=33.99 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=27.5
Q ss_pred EEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEec
Q 018410 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 120 ~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
.|+-| ..|.|..+.+.+|+.|..|++|+.|-.
T Consensus 90 ~i~AP------~dG~V~~~~~~~G~~v~~g~~l~~i~~ 121 (265)
T TIGR00999 90 EVRSP------FDGYITQKSVTLGDYVAPQAELFRVAD 121 (265)
T ss_pred EEECC------CCeEEEEEEcCCCCEeCCCCceEEEEc
Confidence 46667 669999999999999999999998753
No 182
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=62.66 E-value=18 Score=39.04 Aligned_cols=65 Identities=18% Similarity=0.391 Sum_probs=47.5
Q ss_pred EecCCCCCCCceEEEEEE-----EccCCCEEecCCeEEEE-eccceeEE--EecCCCeEEEEEeecCCCeeeeCCCEEEE
Q 018410 121 IGMPSLSPTMQEGNIARW-----LKKEGDKVSPGEVLCEV-ETDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (356)
Q Consensus 121 i~~P~lg~s~~eg~I~~W-----~v~~Gd~V~~Gd~L~eV-ETdKa~~e--i~Ap~~G~I~ki~v~eG~~~V~vG~~la~ 192 (356)
+.+|.|... .+| .+++||.|..||++.+| ||.-...- +|.-..|+|.+| +.+|+ ..+.++|+.
T Consensus 106 ~~~~~ld~~------~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~--ytv~~~i~~ 176 (591)
T TIGR01042 106 VNVPALDRD------KKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN--YTVDDTVLE 176 (591)
T ss_pred CCCCCCCcc------ccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEE
Confidence 456666532 466 58899999999999976 55544333 555668999866 56885 889999998
Q ss_pred Ee
Q 018410 193 TV 194 (356)
Q Consensus 193 i~ 194 (356)
+.
T Consensus 177 ~~ 178 (591)
T TIGR01042 177 VE 178 (591)
T ss_pred Ee
Confidence 84
No 183
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=62.58 E-value=11 Score=36.79 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=29.9
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
..-|.||..|.+. ..++.|+ .|+.||+|+.|.+.
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~-~V~~Gq~lg~I~dp 264 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGD-TIPAGQPLGRVVDL 264 (293)
T ss_pred eEEEecCCCeEEE-EecCCCC-EecCCCEEEEEECC
Confidence 5678999999997 7789997 89999999999764
No 184
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=61.84 E-value=11 Score=37.04 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=29.7
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
..-|.||..|.+. ..++.|+ .|+.||+|+.|.+.
T Consensus 229 ~~~v~A~~~Gl~~-~~~~~G~-~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIFV-PAKHLGD-IVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEEE-ECcCCCC-EECCCCEEEEEeCC
Confidence 5678999999998 6789997 89999999999763
No 185
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=61.57 E-value=14 Score=35.72 Aligned_cols=55 Identities=27% Similarity=0.314 Sum_probs=39.6
Q ss_pred EEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 134 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 134 ~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|..|. .+|+.|++||.+.-++-- .++.+--|. |.+ ++.++.|+ .|..|+.|+.|
T Consensus 211 ~i~~~~-~~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~-~V~~Ge~ig~~ 265 (265)
T PRK03934 211 FIQTYE-YENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGK-SVKFGESIGEI 265 (265)
T ss_pred ceeeec-cCCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCC-EEEcchhhccC
Confidence 344454 349999999999999875 555544443 334 47789997 89999999753
No 186
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=60.57 E-value=17 Score=28.76 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=32.0
Q ss_pred CCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 129 s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.+.+|+|+.+.... ...-...|+...-...+-. -|..+.+..|+ .|+.|++|+.+.
T Consensus 18 A~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~----~l~~~~v~~G~-~V~~G~~IG~~g 73 (96)
T PF01551_consen 18 APADGKVVFVGEDP-----GYGNYVIIQHGNGYITVYG----HLDSVSVKVGD-RVKAGQVIGTVG 73 (96)
T ss_dssp ESSSEEEEEEEEET-----TTEEEEEEEETTSEEEEEE----EESEESS-TTS-EE-TTCEEEEEB
T ss_pred eCccEEEEEEEecc-----CCccEEEEEeCCcCCEEEe----ccccccceecc-cccCCCEEEecC
Confidence 35678887776633 2233344444332222222 25556688997 899999999884
No 187
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=60.42 E-value=13 Score=36.11 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=30.3
Q ss_pred ceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 159 Ka~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
....-+.||..|.+. ..++.|+ .|+.||+|+.+.+.
T Consensus 221 ~~~~~v~Ap~~G~~~-~~~~~G~-~V~~G~~lg~i~dp 256 (288)
T cd06254 221 DDVYYVTSPASGLWY-PFVKAGD-TVQKGALLGYVTDY 256 (288)
T ss_pred cCCEEEecCCCeEEE-EecCCCC-EecCCCEEEEEECC
Confidence 345678999999997 6778997 89999999998764
No 188
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=60.06 E-value=25 Score=40.41 Aligned_cols=67 Identities=34% Similarity=0.488 Sum_probs=49.3
Q ss_pred EEecCCCCCCCceEEEEEEE----ccCCCEEecCCeEEEE-eccceeEE--EecCCCeEEEEEeecCCCeeeeCCCEEEE
Q 018410 120 EIGMPSLSPTMQEGNIARWL----KKEGDKVSPGEVLCEV-ETDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (356)
Q Consensus 120 ~i~~P~lg~s~~eg~I~~W~----v~~Gd~V~~Gd~L~eV-ETdKa~~e--i~Ap~~G~I~ki~v~eG~~~V~vG~~la~ 192 (356)
-|.+|.|... .+|. +++||.|..||++.+| ||.=.+.- +|.-..|+|+.| +.+|+ ..+-++|+.
T Consensus 106 g~~~~~l~~~------~~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~--~~~~~~~~~ 176 (1017)
T PRK14698 106 GISAPALPRD------KKWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE--YTIEEVIAK 176 (1017)
T ss_pred CCCCCCCCCC------CeeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC--cceeeEEEE
Confidence 4567877754 3564 6889999999999988 45444433 556669999966 56884 888999998
Q ss_pred Eec
Q 018410 193 TVE 195 (356)
Q Consensus 193 i~~ 195 (356)
+..
T Consensus 177 ~~~ 179 (1017)
T PRK14698 177 VKT 179 (1017)
T ss_pred EEc
Confidence 844
No 189
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.72 E-value=9.4 Score=37.30 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.9
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++++-
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 6999999999999999999986
No 190
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=59.68 E-value=7.5 Score=42.61 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=28.0
Q ss_pred EEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 163 ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|-||..|+|.+|.+++|+ .|+.||+|+++
T Consensus 1108 ~igAPMpG~vieikvk~G~-kV~Kgqpl~VL 1137 (1176)
T KOG0369|consen 1108 HIGAPMPGTVIEIKVKEGA-KVKKGQPLAVL 1137 (1176)
T ss_pred cccCCCCCceEEEEEecCc-eecCCCceEee
Confidence 3889999999999999998 79999999987
No 191
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=59.26 E-value=12 Score=38.03 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=27.6
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEeccce
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa 160 (356)
..+|.|.++++++|+.|..|++|+.|+.+..
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 3679999999999999999999999987653
No 192
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=59.19 E-value=11 Score=36.66 Aligned_cols=25 Identities=52% Similarity=0.949 Sum_probs=22.4
Q ss_pred EEEEEEEccCCCEEecCCeEEEEec
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
+--++|++++|+.|++||+|++|+-
T Consensus 57 ~l~v~~~~~dG~~v~~g~~i~~i~G 81 (268)
T cd01572 57 GIEVEWLVKDGDRVEPGQVLATVEG 81 (268)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEEE
Confidence 4447999999999999999999986
No 193
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=57.99 E-value=15 Score=35.71 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=29.9
Q ss_pred eeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 160 a~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
...-+.||.+|.+. ..++.|+ .|+.||+|+.+.+.
T Consensus 218 ~~~~v~A~~~G~~~-~~~~~Gd-~V~~G~~ig~i~d~ 252 (287)
T cd06251 218 SSVWVRAPQGGLLR-SLVKLGD-KVKKGQLLATITDP 252 (287)
T ss_pred CCeEEecCCCeEEE-EecCCCC-EECCCCEEEEEECC
Confidence 33579999999998 5889997 89999999998663
No 194
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=57.57 E-value=16 Score=39.98 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=23.0
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccce
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKA 160 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa 160 (356)
|+--+.+|++||+|++||+|+++.-++.
T Consensus 579 G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 579 GKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 4556888999999999999999876544
No 195
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=57.15 E-value=19 Score=45.11 Aligned_cols=20 Identities=25% Similarity=0.430 Sum_probs=18.0
Q ss_pred EEEccCCCEEecCCeEEEEe
Q 018410 137 RWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVE 156 (356)
..+|++|+.|++||.||+..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc
Confidence 57899999999999999864
No 196
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=57.05 E-value=17 Score=36.61 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=29.3
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
.-|.||..|.+. ..++.|+ .|+.|++|+.|.+.-
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd-~V~~G~~lg~I~d~~ 323 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGD-WVEAGDVLAEILDPL 323 (359)
T ss_pred EEEeCCCCeEEE-EecCCCC-EecCCCEEEEEECCC
Confidence 358999999998 6789998 899999999997643
No 197
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=56.62 E-value=28 Score=35.49 Aligned_cols=65 Identities=26% Similarity=0.426 Sum_probs=45.2
Q ss_pred EecCCCCCCCceEEEEEE----EccCCCEEecCCeEEEEe-ccceeEE--EecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 121 IGMPSLSPTMQEGNIARW----LKKEGDKVSPGEVLCEVE-TDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 121 i~~P~lg~s~~eg~I~~W----~v~~Gd~V~~Gd~L~eVE-TdKa~~e--i~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
+.+|.|... .+| .+++||.|..||.|..|. |.-.... ++.-..|+|..| +.+|+ ..+-+.|+.+
T Consensus 38 ~~~~~ld~~------~~w~f~p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~--~~~~~~~~~~ 108 (369)
T cd01134 38 VNVPALDRD------KKWDFKPLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD--YTVDDVILEV 108 (369)
T ss_pred CCCCCCCCC------CeeeeEeccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC--eeEEEEEEEE
Confidence 456666542 245 478999999999999884 4333333 555679999864 46784 7788888877
Q ss_pred e
Q 018410 194 V 194 (356)
Q Consensus 194 ~ 194 (356)
.
T Consensus 109 ~ 109 (369)
T cd01134 109 E 109 (369)
T ss_pred E
Confidence 3
No 198
>PRK04350 thymidine phosphorylase; Provisional
Probab=56.49 E-value=20 Score=37.88 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=35.3
Q ss_pred EEeccceeEEEecCCCeEEEEE------------------------eecCCCeeeeCCCEEEEEec
Q 018410 154 EVETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 154 eVETdKa~~ei~Ap~~G~I~ki------------------------~v~eG~~~V~vG~~la~i~~ 195 (356)
.+-.-+.+.+|.|+.+|+|..| +++.|| .|+.|++|+.|..
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd-~V~~G~~l~~i~a 462 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGD-KVKKGDPLYTIHA 462 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCC-EecCCCeEEEEec
Confidence 4556778999999999999987 788997 8999999999863
No 199
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=56.46 E-value=16 Score=36.43 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=29.1
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
..-|.||..|.+. ..++.|+ .|+.||+|+.|.+
T Consensus 255 ~~~v~Ap~~Gi~~-~~v~~G~-~V~~G~~lg~I~d 287 (325)
T TIGR02994 255 DCFIFAEDDGLIE-FMIDLGD-PVSKGDVIARVYP 287 (325)
T ss_pred CeEEEcCCCeEEE-EecCCCC-EeCCCCEEEEEEC
Confidence 3459999999998 7789997 8999999999976
No 200
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=56.27 E-value=15 Score=35.57 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=28.0
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.--|.||.+|++.. .++-|+ .|+.||+|+++.
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd-~V~KGqvLa~I~ 195 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGD-SVKKGDVIATVG 195 (256)
T ss_pred eEEEECCCCeEEee-ccCCCC-EEeCCCEEEEEc
Confidence 34599999999985 889997 899999999983
No 201
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.08 E-value=12 Score=36.82 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=21.3
Q ss_pred EEEEEccCCCEEecCCeEEEEec
Q 018410 135 IARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 135 I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
-++|++++|+.|++||+|++++-
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVTG 88 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEEe
Confidence 36999999999999999999986
No 202
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=55.78 E-value=9.8 Score=42.53 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=28.0
Q ss_pred EEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 163 ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.|-||..|+|.++.|..|+ .|+.|++|+++
T Consensus 1081 higApmpG~Vv~v~V~~G~-~Vk~Gd~l~~i 1110 (1149)
T COG1038 1081 HIGAPMPGVVVEVKVKKGD-KVKKGDVLAVI 1110 (1149)
T ss_pred ccCCCCCCceEEEEEccCC-eecCCCeeeeh
Confidence 3889999999999999998 89999999987
No 203
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=55.50 E-value=21 Score=37.21 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=33.0
Q ss_pred ccceeEEEecCCCeEEEEE-------------------------------eecCCCeeeeCCCEEEEEec
Q 018410 157 TDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 157 TdKa~~ei~Ap~~G~I~ki-------------------------------~v~eG~~~V~vG~~la~i~~ 195 (356)
.-+.+.+|.|+.+|+|..| +++.|| .|+.|++|+.|..
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd-~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGD-RVEKGEPLAVVHA 403 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcC-EeCCCCeEEEEEC
Confidence 4577899999999999988 778897 8999999999863
No 204
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=55.44 E-value=23 Score=34.91 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=30.6
Q ss_pred ceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 159 Ka~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
....-|.||..|.+. ..++.|+ .|+.|++|+.|.+.
T Consensus 242 ~~~~~v~A~~~G~~~-~~~~~G~-~V~~G~~lg~i~d~ 277 (316)
T cd06252 242 DARCYVFAPHPGLFE-PLVDLGD-EVSAGQVAGRIHFP 277 (316)
T ss_pred CCcEEEEcCCCeEEE-EecCCCC-EEcCCCEEEEEECC
Confidence 344678999999998 7788997 89999999999764
No 205
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=55.39 E-value=11 Score=38.87 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=41.5
Q ss_pred EEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEE-------------------------------eecCCCee
Q 018410 135 IARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKE 183 (356)
Q Consensus 135 I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki-------------------------------~v~eG~~~ 183 (356)
..+|....|-.++.=+-...+-..+...+|.|+.+|+|..| +++.|+ .
T Consensus 307 f~~~v~aQGG~~~~~~~~~~~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~-~ 385 (405)
T TIGR02644 307 FRRFVEAQGGDPDVIKNLDKLPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGD-R 385 (405)
T ss_pred HHHHHHHhCCChhhhcCcccCCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcC-E
Confidence 34555555532221111233456788999999999999987 678897 8
Q ss_pred eeCCCEEEEEec
Q 018410 184 IKVGEVIAITVE 195 (356)
Q Consensus 184 V~vG~~la~i~~ 195 (356)
|+.|++|+.|..
T Consensus 386 V~~g~~l~~i~~ 397 (405)
T TIGR02644 386 VKKGDPLATLYS 397 (405)
T ss_pred eCCCCeEEEEeC
Confidence 999999999863
No 206
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=55.25 E-value=23 Score=38.78 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=33.6
Q ss_pred CCeEEEEeccceeEEEecCCCeEEEEE-----------------------------------eecCCCeeeeCCCEEEEE
Q 018410 149 GEVLCEVETDKATVEMECMEEGYLAKI-----------------------------------VKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 149 Gd~L~eVETdKa~~ei~Ap~~G~I~ki-----------------------------------~v~eG~~~V~vG~~la~i 193 (356)
||-++..=+| -.|.||++|+|..+ ++++|| .|+.||+|+.+
T Consensus 526 G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd-~V~~G~~l~~~ 601 (648)
T PRK10255 526 GDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGA-QVSAGQPILEM 601 (648)
T ss_pred cCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCC-EEcCCCEEEEE
Confidence 7777776665 57899999999876 688997 79999999876
No 207
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=55.20 E-value=21 Score=37.86 Aligned_cols=40 Identities=18% Similarity=0.331 Sum_probs=34.4
Q ss_pred EeccceeEEEecCCCeEEEEE------------------------eecCCCeeeeCCCEEEEEec
Q 018410 155 VETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 155 VETdKa~~ei~Ap~~G~I~ki------------------------~v~eG~~~V~vG~~la~i~~ 195 (356)
+-.-+.+.+|.|+.+|+|..| +++.|| .|+.|++|+.|..
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd-~V~~G~pl~~i~a 471 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGE-KVKKGDPLYTIYA 471 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcC-EeCCCCeEEEEEC
Confidence 445677899999999999987 778997 8999999999863
No 208
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.97 E-value=13 Score=36.46 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=21.0
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++++-
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~G 89 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLEG 89 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEEE
Confidence 6999999999999999999986
No 209
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=54.95 E-value=12 Score=36.69 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++++-
T Consensus 63 v~~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 63 IDDAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred EEEEeCCCCEeCCCCEEEEEEe
Confidence 6999999999999999999986
No 210
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=54.73 E-value=13 Score=39.78 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=25.6
Q ss_pred CCceEEEEEEEccCCC-EEecCCeEEEEecc
Q 018410 129 TMQEGNIARWLKKEGD-KVSPGEVLCEVETD 158 (356)
Q Consensus 129 s~~eg~I~~W~v~~Gd-~V~~Gd~L~eVETd 158 (356)
+..+|.|.++++++|| .|..|++||++..+
T Consensus 160 a~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~ 190 (539)
T PLN02744 160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVEE 190 (539)
T ss_pred CCCCcEEEEEEecCCCcccCCCCEEEEEccC
Confidence 3467999999999996 79999999988543
No 211
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=54.19 E-value=22 Score=37.09 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=34.0
Q ss_pred EeccceeEEEecCCCeEEEEE-------------------------------eecCCCeeeeCCCEEEEEec
Q 018410 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 155 VETdKa~~ei~Ap~~G~I~ki-------------------------------~v~eG~~~V~vG~~la~i~~ 195 (356)
+-.-+...+|.|+.+|+|..| +++.|| .|+.|++|+.|..
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~-~V~~g~~l~~i~~ 399 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGD-SVKKGESLATIYA 399 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcC-EeCCCCeEEEEeC
Confidence 345677899999999999988 778897 8999999999874
No 212
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=54.08 E-value=13 Score=36.07 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++|+-
T Consensus 58 v~~~~~dG~~v~~g~~i~~i~G 79 (272)
T cd01573 58 VDLAAASGSRVAAGAVLLEAEG 79 (272)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 6899999999999999999986
No 213
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=53.73 E-value=18 Score=34.90 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=34.9
Q ss_pred ccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEE
Q 018410 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (356)
Q Consensus 140 v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~ 192 (356)
..+|+.|++||.+.-++-. .++.+--|.+-+--...+.+|+ .|..|+.|+.
T Consensus 207 ~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~-~V~~Ge~ig~ 257 (259)
T PRK03140 207 THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQ-EVRLGEKIGT 257 (259)
T ss_pred ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCC-EEEcChhhcc
Confidence 3578999999988888877 6665554443222234567786 7888888864
No 214
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=53.70 E-value=14 Score=35.82 Aligned_cols=24 Identities=50% Similarity=0.819 Sum_probs=21.6
Q ss_pred EEEEEEccCCCEEecCCeEEEEec
Q 018410 134 NIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 134 ~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
--++|++++|+.|++||+|++|+-
T Consensus 57 ~~v~~~~~dG~~v~~g~~i~~i~G 80 (269)
T cd01568 57 IEVEWLVKDGDRVEAGQVLLEVEG 80 (269)
T ss_pred eEEEEEeCCCCEecCCCEEEEEEE
Confidence 335899999999999999999986
No 215
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=52.67 E-value=11 Score=39.17 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=21.2
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEe
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVE 156 (356)
++-+-=+.|+++.||.|++||+||.|=
T Consensus 377 id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 377 IDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 344444689999999999999999875
No 216
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=52.57 E-value=11 Score=39.14 Aligned_cols=27 Identities=30% Similarity=0.225 Sum_probs=22.4
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEe
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVE 156 (356)
++-+-=+.|+++.||.|++||+|+.|=
T Consensus 376 iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 376 IDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 334444799999999999999999976
No 217
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.38 E-value=14 Score=36.44 Aligned_cols=22 Identities=32% Similarity=0.833 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|+++.||.|++|++|++++-
T Consensus 84 v~~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 84 VTWRYREGDRMTADSTVCELEG 105 (294)
T ss_pred EEEEcCCCCEeCCCCEEEEEEe
Confidence 6999999999999999999986
No 218
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=52.18 E-value=25 Score=36.76 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=33.3
Q ss_pred ccceeEEEecCCCeEEEEE-------------------------------eecCCCeeeeCCCEEEEEec
Q 018410 157 TDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 157 TdKa~~ei~Ap~~G~I~ki-------------------------------~v~eG~~~V~vG~~la~i~~ 195 (356)
..+...+|.|+.+|+|..| +++.|+ .|..|++|+.|..
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~-~V~~Gd~l~~i~~ 404 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGD-RVDAGEPLATLHA 404 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcC-EECCCCeEEEEeC
Confidence 5677999999999999887 778897 8999999999863
No 219
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.15 E-value=15 Score=36.20 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
.+|++++|+.|++||+|++++-
T Consensus 74 ~~~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 74 FTPLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 5899999999999999999986
No 220
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=51.90 E-value=15 Score=36.40 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++++-
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~G 108 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELTG 108 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 6999999999999999999986
No 221
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=51.88 E-value=35 Score=36.89 Aligned_cols=55 Identities=27% Similarity=0.416 Sum_probs=42.0
Q ss_pred EccCCCEEecCCeEEEEecc---ceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 139 LKKEGDKVSPGEVLCEVETD---KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 139 ~v~~Gd~V~~Gd~L~eVETd---Ka~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
.+++||.|..||+|..|.-. +--+=+|.-..|++..| +.+|+ ..+.++|+.+.+.
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~--ytv~~~i~~~~~~ 180 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD--YTVDDTIAVLEDE 180 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEEcc
Confidence 47899999999999998543 22344666779999866 57885 8889999988543
No 222
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=51.78 E-value=15 Score=35.83 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.9
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++++-
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 6999999999999999999986
No 223
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=51.52 E-value=30 Score=37.51 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=39.5
Q ss_pred eEEEEEEEccCCCEEec----CCeEEEEeccceeEEEecCCCeEEEEE--------------------------------
Q 018410 132 EGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI-------------------------------- 175 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~----Gd~L~eVETdKa~~ei~Ap~~G~I~ki-------------------------------- 175 (356)
+|+++.. .++-|.|=. ||-++..=+| -.|.||++|+|..+
T Consensus 470 ~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~g 545 (610)
T TIGR01995 470 AGEMLPL-NEVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEG 545 (610)
T ss_pred ceEEeeH-hhCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCC
Confidence 3555443 344444443 6666665544 47889999988876
Q ss_pred ---eecCCCeeeeCCCEEEEE
Q 018410 176 ---VKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 176 ---~v~eG~~~V~vG~~la~i 193 (356)
++++|| .|+.||+|+.+
T Consensus 546 F~~~v~~g~-~V~~G~~l~~~ 565 (610)
T TIGR01995 546 FEILVKVGD-HVKAGQLLLTF 565 (610)
T ss_pred eEEEecCcC-EEcCCCEEEEe
Confidence 788997 89999999876
No 224
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=51.13 E-value=16 Score=36.46 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++|++|++++-
T Consensus 80 v~~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 80 VEWAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 5899999999999999999986
No 225
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.79 E-value=16 Score=36.02 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++++-
T Consensus 78 v~~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 78 VLDRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 5899999999999999999986
No 226
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=50.64 E-value=29 Score=37.77 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=41.0
Q ss_pred ceEEEEEEEccCCCEEec----CCeEEEEeccceeEEEecCCCeEEEEE-------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------- 175 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~----Gd~L~eVETdKa~~ei~Ap~~G~I~ki------------------------------- 175 (356)
-+|+++.. .++-|.|=. ||-++..=+| -+|.||++|+|..+
T Consensus 485 ~~G~v~~L-~~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~ 560 (627)
T PRK09824 485 MTGEVVPL-EQVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGK 560 (627)
T ss_pred cceEEeeH-HHCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCC
Confidence 34555433 245555544 7777766554 47899999999876
Q ss_pred ----eecCCCeeeeCCCEEEEE
Q 018410 176 ----VKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 176 ----~v~eG~~~V~vG~~la~i 193 (356)
++++|| .|+.||+|+.+
T Consensus 561 gF~~~v~~Gd-~V~~G~~l~~~ 581 (627)
T PRK09824 561 FFTAHVNVGD-KVNTGDLLIEF 581 (627)
T ss_pred CceEEecCCC-EEcCCCEEEEE
Confidence 788997 89999999876
No 227
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.50 E-value=16 Score=35.82 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.7
Q ss_pred EEEEEEccCCCEEecCCeEEEEec
Q 018410 134 NIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 134 ~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
.-++|++++|+.|++||+|++++-
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEEE
Confidence 346999999999999999999986
No 228
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=49.76 E-value=14 Score=39.30 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=27.1
Q ss_pred EecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 164 i~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
+-||..|+|.+++++.|+ .|..||.|+++
T Consensus 604 ~~aPMpG~Iekv~Vkpgd-~V~~Gq~l~Vl 632 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGD-KVKEGQELVVL 632 (670)
T ss_pred eecCCCCeeeeeeccchh-hhcccCceEEE
Confidence 789999999999999997 89999999876
No 229
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=49.27 E-value=16 Score=38.73 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=25.8
Q ss_pred CCCCCceEEEEEEEccCCCEEecCCeEEEEe
Q 018410 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 126 lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVE 156 (356)
+|..++-+-=+.++++.||.|++||+|+.|=
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~ 469 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIY 469 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEE
Confidence 4445666666899999999999999999986
No 230
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.22 E-value=18 Score=35.51 Aligned_cols=22 Identities=32% Similarity=0.592 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++++-
T Consensus 60 v~~~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 60 VEVRKRDGEEVKAGEVILELKG 81 (278)
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 6999999999999999999986
No 231
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=49.14 E-value=16 Score=29.04 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=17.7
Q ss_pred EEEEEccCCCEEecCCeEEEEecc
Q 018410 135 IARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 135 I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
+....|++||.|++||.|+.+...
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred cccccceecccccCCCEEEecCCC
Confidence 444558999999999999998744
No 232
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=48.92 E-value=18 Score=35.02 Aligned_cols=22 Identities=59% Similarity=1.113 Sum_probs=20.6
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++|+-
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEEE
Confidence 4899999999999999999986
No 233
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=48.76 E-value=18 Score=35.44 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|+++.|+.|++|++|++++-
T Consensus 62 ~~~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 62 IDYAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred EEEEeCCCCEeCCCCEEEEEEe
Confidence 6999999999999999999986
No 234
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=48.44 E-value=55 Score=38.73 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=31.5
Q ss_pred EEEccCCCEEecCCeEEEEec-------cceeEEEecCCCeEEE
Q 018410 137 RWLKKEGDKVSPGEVLCEVET-------DKATVEMECMEEGYLA 173 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVET-------dKa~~ei~Ap~~G~I~ 173 (356)
-.+|+.|+.|+.+|+|+|+-+ +|+.=.|.|+.+|.|.
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 404 LLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 468999999999999999976 3566679999999865
No 235
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=48.03 E-value=16 Score=37.78 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.2
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEec
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++-+-=+.++++.||.|++||+||.|=+
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~ 397 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYS 397 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeC
Confidence 4444457999999999999999999864
No 236
>PRK04350 thymidine phosphorylase; Provisional
Probab=47.80 E-value=17 Score=38.39 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=26.0
Q ss_pred CCCCCceEEEEEEEccCCCEEecCCeEEEEe
Q 018410 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 126 lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVE 156 (356)
+|.-++-+-=+.++++.||.|++||+|+.|=
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 4455666666899999999999999999986
No 237
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=47.01 E-value=17 Score=35.38 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=27.7
Q ss_pred eeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 160 a~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..--++..+-|..-+.+++||| .|+.||+|++-
T Consensus 28 ~~al~~~Df~g~~Pkm~VkeGD-~Vk~Gq~LF~d 60 (257)
T PF05896_consen 28 TVALLPDDFPGMKPKMLVKEGD-RVKAGQPLFED 60 (257)
T ss_pred EEEEcCcccCCCCccEEeccCC-EEeCCCeeEee
Confidence 3344677899999999999998 89999999863
No 238
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=46.94 E-value=30 Score=27.12 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=20.3
Q ss_pred CCCeEEEEEeecCCCeeeeCCCEEEEEeccC
Q 018410 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 167 p~~G~I~ki~v~eG~~~V~vG~~la~i~~~~ 197 (356)
+..|+. ++++.|| .|+.|++|+.+....
T Consensus 30 ~~vGi~--l~~k~Gd-~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 30 PAVGIE--LHKKVGD-RVEKGDPLATIYAND 57 (75)
T ss_dssp TT-EEE--ESS-TTS-EEBTTSEEEEEEESS
T ss_pred cCcCeE--ecCcCcC-EECCCCeEEEEEcCC
Confidence 445655 6889998 899999999886543
No 239
>PRK12784 hypothetical protein; Provisional
Probab=46.89 E-value=28 Score=27.96 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.2
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccce
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa 160 (356)
.|.|....|.+||.|..|-.|+.||.|-.
T Consensus 51 SG~I~~v~Ve~Gq~i~~dtlL~~~edDll 79 (84)
T PRK12784 51 SGNIRLVNVVVGQQIHTDTLLVRLEDDLL 79 (84)
T ss_pred eeeEEEEEeecCceecCCcEEEEEeeceE
Confidence 38999999999999999999999998843
No 240
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=46.87 E-value=11 Score=35.98 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=26.2
Q ss_pred EEEEccCCCEEecCCeEEEEeccceeEE
Q 018410 136 ARWLKKEGDKVSPGEVLCEVETDKATVE 163 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVETdKa~~e 163 (356)
..|++.+|..+++=|+.|.||.||..++
T Consensus 180 asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 180 ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred cccccccccceeeEEEEEEEEcCccccc
Confidence 4799999999999999999999999886
No 241
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=46.41 E-value=18 Score=38.35 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=26.0
Q ss_pred CCCCCceEEEEEEEccCCCEEecCCeEEEEe
Q 018410 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 126 lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVE 156 (356)
+|..++-+-=+.++++.||.|++||+|+.|=
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 4555666666899999999999999999986
No 242
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=46.00 E-value=23 Score=33.65 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=35.8
Q ss_pred CCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEE
Q 018410 143 GDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (356)
Q Consensus 143 Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~ 192 (356)
|+.|++||.|.-++-- .++.+--|.+-+-....+.+|+ .|..|+.|+.
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~-kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQ-EVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCC-EEEcChhhcc
Confidence 9999999999999874 5666555543222256778897 7999999864
No 243
>COG3608 Predicted deacylase [General function prediction only]
Probab=45.84 E-value=36 Score=34.29 Aligned_cols=38 Identities=13% Similarity=0.311 Sum_probs=31.0
Q ss_pred EEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 154 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 154 eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
..+++ .--+.||..|.|. .++..|| .|..|++|+++.+
T Consensus 251 ~~~~~--~~~i~Ap~~G~v~-~~v~lGd-~VeaG~~la~i~~ 288 (331)
T COG3608 251 ALPSS--DEMIRAPAGGLVE-FLVDLGD-KVEAGDVLATIHD 288 (331)
T ss_pred ecccc--cceeecCCCceEE-EeecCCC-cccCCCeEEEEec
Confidence 34444 3458999999997 8999998 8999999999865
No 244
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=45.30 E-value=19 Score=37.53 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=24.1
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
+-+-=+.|+++.||.|++||+|+.|=+|+
T Consensus 373 d~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 373 DLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred CcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 44445799999999999999999987554
No 245
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=42.36 E-value=28 Score=35.45 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=19.3
Q ss_pred ceEEEEEE-------EccCCCEEecCCeEEE
Q 018410 131 QEGNIARW-------LKKEGDKVSPGEVLCE 154 (356)
Q Consensus 131 ~eg~I~~W-------~v~~Gd~V~~Gd~L~e 154 (356)
.+|.|.+. +|++||.|++||+|..
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 55777666 5789999999999983
No 246
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=41.76 E-value=32 Score=33.66 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=38.9
Q ss_pred EEEEEEccC----CCEEecCCeEEEEeccceeEEEecCCCeEEE-EEeecCCCeeeeCCCEEEEEe
Q 018410 134 NIARWLKKE----GDKVSPGEVLCEVETDKATVEMECMEEGYLA-KIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 134 ~I~~W~v~~----Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~-ki~v~eG~~~V~vG~~la~i~ 194 (356)
.+..|.... |..|++||.+.-++=. .++.+--|.+ .+. ...+.+|+ .|..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~-kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGS-VVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCC-EEEcChhhcCcc
Confidence 344554432 7799999999998875 5555444433 332 23467897 899999998653
No 247
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=40.98 E-value=47 Score=32.00 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=30.8
Q ss_pred ccCCCEEec-CCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEE
Q 018410 140 KKEGDKVSP-GEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (356)
Q Consensus 140 v~~Gd~V~~-Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~ 192 (356)
+..|+.|.+ |++|++.. .-+|.+|++|.+. . -... .+.+|+..++
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl--~-~p~~-~~~~G~~~~~ 271 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCVL--I-MPSL-RPLRGQTAVR 271 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEEE--E-ccCC-CCCCCceeee
Confidence 455788888 99888832 2788889998774 2 2443 4668877654
No 248
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=40.72 E-value=53 Score=34.15 Aligned_cols=40 Identities=28% Similarity=0.436 Sum_probs=33.1
Q ss_pred EeccceeEEEecCCCeEEEEE-------------------------------eecCCCeeeeCCCEEEEEec
Q 018410 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 155 VETdKa~~ei~Ap~~G~I~ki-------------------------------~v~eG~~~V~vG~~la~i~~ 195 (356)
+..-+...+|.|..+|+|..+ +.+.|+ .|++|++|+.|..
T Consensus 330 l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge-~Vk~Gd~l~tiya 400 (435)
T COG0213 330 LPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGE-KVKKGDPLATIYA 400 (435)
T ss_pred cccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCC-eeccCCeEEEEec
Confidence 445677888999999998877 677897 8999999999865
No 249
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.67 E-value=68 Score=28.54 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.8
Q ss_pred CCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 167 p~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
|.+|++....+..|. .|..|+++|-+..
T Consensus 97 PvEGYvVtpIaDvG~-RvrkGd~~AAvtt 124 (161)
T COG4072 97 PVEGYVVTPIADVGN-RVRKGDPFAAVTT 124 (161)
T ss_pred ecCcEEEEEeecccc-hhcCCCceeEEEe
Confidence 788999999999997 8999999987644
No 250
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=38.27 E-value=31 Score=32.81 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=52.5
Q ss_pred EEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEecc-----ce----------eEEEecCCCeEEEEEeecCCCeee
Q 018410 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD-----KA----------TVEMECMEEGYLAKIVKGDGSKEI 184 (356)
Q Consensus 120 ~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd-----Ka----------~~ei~Ap~~G~I~ki~v~eG~~~V 184 (356)
.+....+||+++-.-+.+-.+..||.++-|+.|++|-.- |. ..-......|...+++ ++| .|
T Consensus 78 ~l~~G~fGENLtv~Gl~e~~v~IGD~~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RVL-~~G--~V 154 (223)
T PRK11536 78 LFVAPAFGENLSTDGLTESNVFIGDIFRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRVI-APG--KV 154 (223)
T ss_pred ccCCCCccCCEEecCcChhhCCccCEEEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEEE-CCc--EE
Confidence 355678899877666777888999999999999988541 11 1112345679988765 678 49
Q ss_pred eCCCEEEEE
Q 018410 185 KVGEVIAIT 193 (356)
Q Consensus 185 ~vG~~la~i 193 (356)
.+|+.|-++
T Consensus 155 ~~GD~v~l~ 163 (223)
T PRK11536 155 SADAPLELV 163 (223)
T ss_pred cCCCEEEEE
Confidence 999999876
No 251
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=38.23 E-value=28 Score=36.43 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=24.7
Q ss_pred CCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 167 MEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 167 p~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
...|.|.++..+||| .+..|++||+|.
T Consensus 50 MeeGnIvsW~kKeGd-kls~GDvl~EVE 76 (470)
T KOG0557|consen 50 MEEGNIVSWKKKEGD-KLSAGDVLLEVE 76 (470)
T ss_pred ccCCceeeEeeccCC-ccCCCceEEEEe
Confidence 678999999999998 899999999983
No 252
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=37.41 E-value=62 Score=26.84 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=29.6
Q ss_pred EecCCeEEEEec-cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 146 VSPGEVLCEVET-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 146 V~~Gd~L~eVET-dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
...+..|-.+.. +++.+.+ ....|.-.+.+|.+|| .|..||.|+..
T Consensus 15 ~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd-~V~~GQ~Ia~~ 61 (101)
T PF13375_consen 15 LSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGD-KVKKGQLIAEA 61 (101)
T ss_pred cccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCC-EEcCCCEEEec
Confidence 344555554442 2333333 3446666778999998 89999999964
No 253
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=37.21 E-value=67 Score=34.79 Aligned_cols=65 Identities=31% Similarity=0.499 Sum_probs=46.7
Q ss_pred EecCCCCCCCceEEEEEEE----ccCCCEEecCCeEEEE-eccceeEE--EecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 121 IGMPSLSPTMQEGNIARWL----KKEGDKVSPGEVLCEV-ETDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 121 i~~P~lg~s~~eg~I~~W~----v~~Gd~V~~Gd~L~eV-ETdKa~~e--i~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
+.+|.|... .+|. +++||.|..||+|++| ||.-.... ++.-..|+|..| +.+|+ ..+-++|+.+
T Consensus 104 ~~~~~l~~~------~~w~f~p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~--~~~~~~v~~~ 174 (578)
T TIGR01043 104 VDAPGLDRD------KKWHFKPTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD--YTVEDTIAVV 174 (578)
T ss_pred ccCCCcCcc------cccccccccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC--ceeeeeEEEE
Confidence 456666532 3553 7899999999999988 55444333 455579999866 56885 8889999987
Q ss_pred e
Q 018410 194 V 194 (356)
Q Consensus 194 ~ 194 (356)
.
T Consensus 175 ~ 175 (578)
T TIGR01043 175 D 175 (578)
T ss_pred e
Confidence 3
No 254
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.42 E-value=34 Score=35.47 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=28.8
Q ss_pred EEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 152 LCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 152 L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
++.|...+.-+-|.+. .-.|+|.+|+ .|..|++|+.+.+.
T Consensus 354 vvIldhG~gy~slyg~----~~~i~v~~G~-~V~AGepIa~~G~s 393 (420)
T COG4942 354 VVILDHGGGYHSLYGG----NQSILVNPGQ-FVKAGEPIALVGSS 393 (420)
T ss_pred EEEEEcCCccEEEecc----cceeeecCCC-EeecCCchhhccCC
Confidence 4466666666666544 4457889997 89999999987554
No 255
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=36.25 E-value=34 Score=34.40 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.3
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEec
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++++ |++++|+.|.+|++|++||-
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G 92 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEG 92 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEE
Confidence 3554 99999999999999999987
No 256
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=36.12 E-value=54 Score=33.40 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=18.6
Q ss_pred ceEEEEEE-------EccCCCEEecCCeEEE
Q 018410 131 QEGNIARW-------LKKEGDKVSPGEVLCE 154 (356)
Q Consensus 131 ~eg~I~~W-------~v~~Gd~V~~Gd~L~e 154 (356)
.+|.|.+. .|++||.|++||+|..
T Consensus 193 kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 193 KDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 45666665 4688999999999984
No 257
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=36.09 E-value=43 Score=39.76 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=32.5
Q ss_pred EEEccCCCEEecCCeEEEEec--------cceeEEEecCCCeEEEE
Q 018410 137 RWLKKEGDKVSPGEVLCEVET--------DKATVEMECMEEGYLAK 174 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVET--------dKa~~ei~Ap~~G~I~k 174 (356)
..+|+.||.|++||+|||+.. +|+...|-+..+|.|.-
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~ 450 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHW 450 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEc
Confidence 468999999999999999974 56678899999998753
No 258
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.62 E-value=39 Score=33.38 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.4
Q ss_pred EEEEEEc--cCCCEEecCCeEEEEec
Q 018410 134 NIARWLK--KEGDKVSPGEVLCEVET 157 (356)
Q Consensus 134 ~I~~W~v--~~Gd~V~~Gd~L~eVET 157 (356)
....|++ ++|+.|++||+|++++-
T Consensus 71 ~~~~~~~~~~dG~~v~~G~~i~~v~G 96 (290)
T PRK06559 71 VTFQNPHQFKDGDRLTSGDLVLEIIG 96 (290)
T ss_pred EEEEEeecCCCCCEecCCCEEEEEEE
Confidence 3468998 99999999999999987
No 259
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=34.15 E-value=23 Score=35.40 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=11.6
Q ss_pred EeecCCCeeeeCCCEEEEEec
Q 018410 175 IVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 175 i~v~eG~~~V~vG~~la~i~~ 195 (356)
|+|.+|+ .|+.||.|+.+..
T Consensus 272 i~Vk~Gq-~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 272 MLVREQQ-EVKAGQKIATMGS 291 (319)
T ss_pred cccCCcC-EECCCCeEEeEcC
Confidence 4555665 5666666665543
No 260
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.43 E-value=49 Score=31.23 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=52.2
Q ss_pred EecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEecc---------ce-----eEE-EecCCCeEEEEEeecCCCeeee
Q 018410 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD---------KA-----TVE-MECMEEGYLAKIVKGDGSKEIK 185 (356)
Q Consensus 121 i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd---------Ka-----~~e-i~Ap~~G~I~ki~v~eG~~~V~ 185 (356)
+.-+.+||+++-.-|.+-.+..||.+.-|++|.||.-- +. ... -++-..|+..+++ ++| .|.
T Consensus 76 l~pg~fGENltt~Gl~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~~~~~~~~~~~G~~G~y~RVL-~~G--~v~ 152 (210)
T COG2258 76 LQPGAFGENLTTSGLDEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGIPDLAKRFQQTGRTGWYARVL-EEG--KVR 152 (210)
T ss_pred CCcccccCceeecCcchhhccccCEEEeccEEEEecCCCCchHHHHHhcCCccHHHHhhccCcccEEEEEc-ccc--eec
Confidence 45667899888888888899999999999999999641 11 111 2345568888665 677 499
Q ss_pred CCCEEEEE
Q 018410 186 VGEVIAIT 193 (356)
Q Consensus 186 vG~~la~i 193 (356)
+|++|-++
T Consensus 153 ~gD~l~l~ 160 (210)
T COG2258 153 AGDPLKLI 160 (210)
T ss_pred CCCceEEe
Confidence 99999876
No 261
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=32.90 E-value=45 Score=33.75 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred EEEEEEccCCCEEecCCeEEEEec
Q 018410 134 NIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 134 ~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
.+..|.+++|+.|.+||+|++||-
T Consensus 71 ~~~i~a~~eG~~v~~gepvl~i~G 94 (352)
T PRK07188 71 KLKIRYLKDGDIINPFETVLEIEG 94 (352)
T ss_pred ceEEEEcCCCCEecCCCEEEEEEE
Confidence 356899999999999999999987
No 262
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=32.42 E-value=91 Score=24.76 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=16.2
Q ss_pred EEEeecCCCeeeeCCCEEEEEe
Q 018410 173 AKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 173 ~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.++++++|+ .|..|++|+.+.
T Consensus 47 v~~~~~dG~-~v~~g~~i~~i~ 67 (88)
T PF02749_consen 47 VEWLVKDGD-RVEPGDVILEIE 67 (88)
T ss_dssp EEESS-TT--EEETTCEEEEEE
T ss_pred EEEEeCCCC-CccCCcEEEEEE
Confidence 457889997 899999999874
No 263
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=31.96 E-value=64 Score=38.78 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=40.1
Q ss_pred CCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 143 GDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 143 Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|-.+.-|--.|..|-+--..-+.+|..|.+.+.+|+.|+ .|.+|++-|.+
T Consensus 667 ~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~-hv~~Gq~YAei 716 (2196)
T KOG0368|consen 667 GYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGE-HVEAGQPYAEI 716 (2196)
T ss_pred eEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCC-ceecCCeeeeh
Confidence 445566666676666555566899999999999999997 89999998865
No 264
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=30.76 E-value=78 Score=27.26 Aligned_cols=48 Identities=19% Similarity=0.395 Sum_probs=0.0
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEec---cceeEEEec-CCCeEEEEEeecCCCeeeeCCCEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVET---DKATVEMEC-MEEGYLAKIVKGDGSKEIKVGEVI 190 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVET---dKa~~ei~A-p~~G~I~ki~v~eG~~~V~vG~~l 190 (356)
..|+|.++..++ +|.-...|+| +..+-.||+ | +++|.+|+ .|+.|++|
T Consensus 9 ~~G~I~~I~~~e-----kgg~~vtI~~~dG~~v~~~IP~Gp------eLiV~eG~-~V~~dqpL 60 (118)
T PF01333_consen 9 AAGTITKITRKE-----KGGYEVTIETSDGETVVETIPAGP------ELIVSEGQ-SVKADQPL 60 (118)
T ss_dssp SSEEEEEEEEET-----TSEEEEEEETTTSEEEEEEEESSS-------BS--TT--EETTT-BS
T ss_pred CCeEEEEEEEcC-----CCCEEEEEECCCCCEEEEecCCCC------eEEEcCCC-EEecCCcc
No 265
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=28.87 E-value=57 Score=31.14 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.5
Q ss_pred EEEEEEEccCCCEEecCCeEEEEec
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
+.+..|.+++|+.|..||+|++||-
T Consensus 49 ~~~~~~~~~eG~~v~~g~~vl~i~G 73 (281)
T cd00516 49 GPLVILAVPEGTVVEPGEPLLTIEG 73 (281)
T ss_pred CceEEEECCCCCEecCCCEEEEEEE
Confidence 5567999999999999999999986
No 266
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=26.43 E-value=54 Score=25.37 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=35.6
Q ss_pred EEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecC----------CCeeeeCCCEE-EEEec
Q 018410 138 WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD----------GSKEIKVGEVI-AITVE 195 (356)
Q Consensus 138 W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~e----------G~~~V~vG~~l-a~i~~ 195 (356)
|..++||.| .|. +..|..+.+.+++....+|.|..-.... .+ .+++|+.| |.+..
T Consensus 2 y~p~~GdiV-~g~-V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~-~l~vGd~i~~~V~~ 67 (86)
T cd05789 2 YIPEVGDVV-IGR-VTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRS-YLDEGDLIVAEVQS 67 (86)
T ss_pred CcCCCCCEE-EEE-EEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHh-hCCCCCEEEEEEEE
Confidence 556777777 343 3346667788889888999887433221 21 37899988 44433
No 267
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=26.25 E-value=58 Score=33.91 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=22.9
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEec
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++-+-=+..+++.||.|++||+|+.|=+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 3445557899999999999999998755
No 268
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=24.54 E-value=1e+02 Score=31.39 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=35.3
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEE-------eecCCCeeeeCCCEEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI-------VKGDGSKEIKVGEVIA 191 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki-------~v~eG~~~V~vG~~la 191 (356)
+|+-....+.|-... +...+..--+|-|-.+|+|.++ .|++|| .|+.||+|.
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd-~VkkGdvLI 225 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGD-TVKKGDVLI 225 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCC-EECCCCEEE
Confidence 455556666654322 3333455677889999999998 566776 788888885
No 269
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=24.52 E-value=79 Score=32.23 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=32.4
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe-------ecCCCeeeeCCCEEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV-------KGDGSKEIKVGEVIA 191 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~-------v~eG~~~V~vG~~la 191 (356)
+|+-....+.|.... -+.+.+..--+|-|-.+|+|.++. |++|| .|+.||+|.
T Consensus 163 ~GTrl~i~v~Ek~~~------p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD-~VkkGqvLI 222 (382)
T TIGR02876 163 RGTTLVIKVVEKQEP------KPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGD-VVKKGDLLI 222 (382)
T ss_pred EeEEEEEEEEecCCC------CCccccCCCccEEECCCCEEEEEEEcCCeEEEccCC-EEcCCCEEE
Confidence 355555555555321 111123334578899999999985 56676 678888874
No 270
>PRK11637 AmiB activator; Provisional
Probab=23.85 E-value=1e+02 Score=31.48 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=36.8
Q ss_pred eEEecCCCCC---CCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 119 QEIGMPSLSP---TMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 119 ~~i~~P~lg~---s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
++|..|. |. ....|+|+....-.| -|- ++.|+-..-.+.+.+. +..+.+.+|+ .|..|++|+.+..
T Consensus 332 i~i~~~~-g~~v~A~~~G~V~~~~~~~~----~G~-~vii~hg~g~~t~Y~~----~~~~~v~~G~-~V~~G~~ig~~g~ 400 (428)
T PRK11637 332 MVIGASE-GTEVKAIADGRVLLADWLQG----YGL-VVVVEHGKGDMSLYGY----NQSALVSVGA-QVRAGQPIALVGS 400 (428)
T ss_pred EEeecCC-CCeEEecCCeEEEEeeccCC----ccc-EEEEEeCCCcEEEccC----CCcCCCCCcC-EECCCCeEEeecC
Confidence 4555553 22 246677754311111 233 3344443333444432 4456789997 8999999998854
Q ss_pred c
Q 018410 196 E 196 (356)
Q Consensus 196 ~ 196 (356)
+
T Consensus 401 ~ 401 (428)
T PRK11637 401 S 401 (428)
T ss_pred C
Confidence 3
No 271
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=23.65 E-value=80 Score=31.10 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEEEEccCCCEEecCCeEEEEec
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
.+| . .+++|+.|..|++|++||.
T Consensus 53 ~~i-~-~~~dG~~v~~g~~i~~i~G 75 (302)
T cd01571 53 VKV-Y-ALPEGTIFNPKEPVLRIEG 75 (302)
T ss_pred eEE-E-EeCCCCEECCCCcEEEEEe
Confidence 555 3 5899999999999999987
No 272
>PRK02259 aspartoacylase; Provisional
Probab=22.90 E-value=39 Score=32.89 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=36.1
Q ss_pred EEEccCC--CEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEE
Q 018410 137 RWLKKEG--DKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIA 191 (356)
Q Consensus 137 ~W~v~~G--d~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la 191 (356)
.=.++.| +.|++||+|+.. .|--++.++++.+|+.. ++.|.. -+..|..++
T Consensus 229 hp~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~pv--fine~a-y~~kg~a~~ 281 (288)
T PRK02259 229 HPQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYPV--FINEAA-YYEKGIAMS 281 (288)
T ss_pred chhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEeE--EecHHH-HHhhhhHhh
Confidence 3345557 559999999998 67778889999988885 555554 455555443
No 273
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=22.88 E-value=70 Score=27.06 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=24.4
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~ 292 (356)
..|.|.++++++|||++.. .+ .|+.+|+..+
T Consensus 42 ~~~~a~~~l~~~Gid~~~~---~~--~l~~~~~~~~ 72 (140)
T smart00226 42 ADPRAVEVLKEHGIALSHH---AS--QLTSSDFKNA 72 (140)
T ss_pred CCHHHHHHHHHcCcCccce---ec--cCCHHHHHhC
Confidence 4799999999999998642 22 7888887654
No 274
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=22.82 E-value=85 Score=28.14 Aligned_cols=42 Identities=24% Similarity=0.473 Sum_probs=24.6
Q ss_pred EEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccCC
Q 018410 145 KVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (356)
Q Consensus 145 ~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~~ 198 (356)
.+++|+-|+.++. +|+..-+.+.+|+ .|..|+.||.+..-.+
T Consensus 75 ~l~~G~~L~l~~v-----------eG~~v~~i~~~G~-rV~~gd~lA~v~T~KG 116 (150)
T PF09891_consen 75 LLKKGTELCLVPV-----------EGYQVYPIVDEGD-RVRKGDRLAYVTTRKG 116 (150)
T ss_dssp EE-TT-B-EEEEE-----------ESSEEEESS-TSE-EE-TT-EEEEEE-TTS
T ss_pred EECCCCEEEEEEe-----------cceEEEEEcccCc-EeccCcEEEEEEecCc
Confidence 3456666776653 3555567889997 8999999998855433
No 275
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=22.68 E-value=59 Score=34.00 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=24.5
Q ss_pred EecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 164 i~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..+.+-|.-.+.+|++|| .|..||+|+.-
T Consensus 33 pl~qh~G~~~~~~V~~GD-~V~~Gq~I~~~ 61 (448)
T PRK05352 33 LGEDYVGLRPKMKVKEGD-KVKKGQPLFED 61 (448)
T ss_pred echhcCCCCCceEeCcCC-EEcCCCEeEec
Confidence 446777888889999998 89999999853
No 276
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=22.51 E-value=35 Score=29.65 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.7
Q ss_pred ChHHHHHHHHcCCCccccc
Q 018410 258 SPVARNLAEEHNVSLSSIK 276 (356)
Q Consensus 258 SP~ARkLA~e~gIDLs~V~ 276 (356)
-|.+|.||.++||++..|.
T Consensus 35 LPSvRelA~~~~VNpnTv~ 53 (125)
T COG1725 35 LPSVRELAKDLGVNPNTVQ 53 (125)
T ss_pred CCcHHHHHHHhCCCHHHHH
Confidence 5999999999999987664
No 277
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=22.21 E-value=79 Score=27.49 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=23.8
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIED 291 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~ 291 (356)
+.|.+.++++++|||++.-. .-.|+.+|+..
T Consensus 45 ~~~~a~~~l~~~Gid~~~h~----s~~lt~~~~~~ 75 (144)
T PRK11391 45 ADATAADVAANHGVSLEGHA----GRKLTAEMARN 75 (144)
T ss_pred CCHHHHHHHHHcCCCcCCCc----cCcCCHHHHhh
Confidence 57999999999999986532 23677777764
No 278
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=22.12 E-value=76 Score=21.14 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=23.3
Q ss_pred hHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHH
Q 018410 259 PVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (356)
Q Consensus 259 P~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~ 294 (356)
..++++.++..+..-.+ |..-++.++||++|++
T Consensus 16 ~ti~~~~~~g~i~~~~~---g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 16 DTVYRLIHEGELPAYRV---GRHYRIPREDVDEYLE 48 (49)
T ss_pred HHHHHHHHcCCCCeEEe---CCeEEEeHHHHHHHHh
Confidence 35677777665655443 4567899999999975
No 279
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=21.52 E-value=88 Score=31.78 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=39.0
Q ss_pred EEEEEEccCCCEEecCCeEEEEeccceeE-EEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 134 NIARWLKKEGDKVSPGEVLCEVETDKATV-EMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 134 ~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~-ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.+..|.-..+..|++||.+...+-.-+.+ -++++. .+ +..+++|+ .|++||.|+.+
T Consensus 282 ~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~-~Vr~Gq~lg~~ 338 (353)
T PTZ00403 282 DINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQ-TVSVGQRLGGV 338 (353)
T ss_pred cceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCC-EEEeeeecccc
Confidence 34445555577999999999888744433 345554 23 35678997 89999999866
No 280
>PRK10126 tyrosine phosphatase; Provisional
Probab=21.48 E-value=72 Score=27.65 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=24.1
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~ 292 (356)
+.|.|.+.++++|||++.-.. -.|+.+|++.+
T Consensus 45 ~~~~a~~~l~~~Gid~~~h~s----r~lt~~~~~~~ 76 (147)
T PRK10126 45 ADPTAISVAAEHQLSLEGHCA----RQISRRLCRNY 76 (147)
T ss_pred CCHHHHHHHHHcCCCcCCCcc----ccCCHHHhccC
Confidence 579999999999999875332 36777777543
No 281
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=20.34 E-value=3.7e+02 Score=24.86 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=35.0
Q ss_pred ceEEEEEEEccCCCEEec--------CC-eEEEEeccc---ee-EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSP--------GE-VLCEVETDK---AT-VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~--------Gd-~L~eVETdK---a~-~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-+|+|.++...+|+.... ++ .++.+||++ .. +.|-+...+.|. ..+++|+ .++.|+.++.+
T Consensus 98 ~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~-~v~kGe~~G~f 171 (206)
T PRK05305 98 VSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGD-EVERGERFGLI 171 (206)
T ss_pred ccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCC-EEccCcEEeEE
Confidence 356777776666664432 22 334666652 21 222233334443 2567897 89999999987
Done!