Query 018410
Match_columns 356
No_of_seqs 266 out of 1876
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 14:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 8.7E-45 3E-49 366.0 1.4 228 119-356 3-237 (428)
2 1zy8_K Pyruvate dehydrogenase 100.0 1.5E-32 5E-37 256.3 4.8 166 118-295 3-169 (229)
3 1y8o_B Dihydrolipoyllysine-res 99.8 7.3E-21 2.5E-25 162.8 13.1 97 104-200 13-109 (128)
4 2dne_A Dihydrolipoyllysine-res 99.8 5E-20 1.7E-24 153.0 10.6 87 114-200 3-89 (108)
5 3crk_C Dihydrolipoyllysine-res 99.8 4.2E-19 1.4E-23 141.1 12.3 81 115-195 2-82 (87)
6 2dnc_A Pyruvate dehydrogenase 99.8 7.4E-19 2.5E-23 143.3 11.7 80 116-196 5-85 (98)
7 1k8m_A E2 component of branche 99.8 2.3E-18 7.8E-23 139.0 10.7 77 117-194 3-79 (93)
8 1ghj_A E2, E2, the dihydrolipo 99.7 1.5E-17 5.1E-22 129.3 9.2 75 119-194 2-76 (79)
9 2l5t_A Lipoamide acyltransfera 99.7 1.5E-16 5.3E-21 122.8 8.8 74 119-193 2-75 (77)
10 1qjo_A Dihydrolipoamide acetyl 99.7 2.4E-16 8.1E-21 122.4 9.2 74 119-195 3-76 (80)
11 1pmr_A Dihydrolipoyl succinylt 99.7 5.4E-18 1.9E-22 132.4 -0.7 74 119-193 3-76 (80)
12 1iyu_A E2P, dihydrolipoamide a 99.6 1E-15 3.5E-20 118.9 9.8 73 119-195 2-74 (79)
13 1gjx_A Pyruvate dehydrogenase; 99.6 4.9E-16 1.7E-20 121.1 4.5 75 118-194 2-76 (81)
14 2k7v_A Dihydrolipoyllysine-res 99.4 1.2E-14 4.1E-19 114.7 1.1 70 119-195 3-72 (85)
15 1z6h_A Biotin/lipoyl attachmen 99.4 1.4E-12 4.6E-17 98.7 9.2 63 131-194 6-68 (72)
16 2kcc_A Acetyl-COA carboxylase 99.4 6.4E-13 2.2E-17 104.8 7.0 63 131-195 12-74 (84)
17 2jku_A Propionyl-COA carboxyla 99.4 1.8E-13 6.2E-18 110.2 2.7 81 112-193 9-93 (94)
18 2dn8_A Acetyl-COA carboxylase 99.3 5E-12 1.7E-16 102.6 8.7 62 131-194 24-85 (100)
19 2eq9_C Pyruvate dehydrogenase 99.3 1.3E-12 4.6E-17 89.9 4.3 40 255-294 1-40 (41)
20 3rnm_E Lipoamide acyltransfera 99.3 1.3E-12 4.5E-17 97.0 4.1 43 253-295 6-48 (58)
21 2d5d_A Methylmalonyl-COA decar 99.3 1.9E-11 6.5E-16 92.5 9.5 62 131-193 12-73 (74)
22 1bdo_A Acetyl-COA carboxylase; 99.3 9.6E-12 3.3E-16 96.4 7.1 56 137-193 24-79 (80)
23 2eq8_C Pyruvate dehydrogenase 99.3 4E-12 1.4E-16 87.1 4.3 37 257-293 2-38 (40)
24 1dcz_A Transcarboxylase 1.3S s 99.2 2.4E-11 8.1E-16 93.1 8.8 62 131-193 15-76 (77)
25 2eq7_C 2-oxoglutarate dehydrog 99.2 3E-12 1E-16 87.7 2.6 37 257-293 2-38 (40)
26 2ejm_A Methylcrotonoyl-COA car 99.2 2.4E-11 8.3E-16 98.5 7.7 64 131-195 21-84 (99)
27 1w85_I Dihydrolipoyllysine-res 99.2 1.2E-11 3.9E-16 88.6 4.1 41 254-294 6-46 (49)
28 1bal_A Dihydrolipoamide succin 99.2 7.3E-12 2.5E-16 90.5 2.2 40 254-293 9-48 (51)
29 3n6r_A Propionyl-COA carboxyla 99.2 5.3E-11 1.8E-15 126.0 9.3 61 132-193 620-680 (681)
30 3va7_A KLLA0E08119P; carboxyla 99.1 6.3E-11 2.2E-15 132.6 9.2 60 133-193 1176-1235(1236)
31 2f60_K Pyruvate dehydrogenase 99.1 3.1E-11 1.1E-15 91.3 3.1 42 254-295 9-50 (64)
32 2coo_A Lipoamide acyltransfera 99.1 1.2E-10 4.2E-15 89.5 6.4 42 254-295 15-56 (70)
33 1w4i_A Pyruvate dehydrogenase 99.1 6.5E-11 2.2E-15 88.9 4.0 42 254-295 4-45 (62)
34 3hbl_A Pyruvate carboxylase; T 99.1 1.8E-10 6.3E-15 128.2 9.0 63 131-194 1084-1146(1150)
35 3u9t_A MCC alpha, methylcroton 99.1 1.6E-11 5.4E-16 130.0 0.0 63 131-194 609-671 (675)
36 2k32_A A; NMR {Campylobacter j 98.8 4.6E-09 1.6E-13 86.6 6.2 66 131-197 8-103 (116)
37 3bg3_A Pyruvate carboxylase, m 98.8 1.6E-09 5.6E-14 115.3 2.9 62 131-193 656-717 (718)
38 2qf7_A Pyruvate carboxylase pr 98.7 4.4E-09 1.5E-13 117.3 5.0 62 131-193 1102-1163(1165)
39 1zko_A Glycine cleavage system 98.7 1.2E-08 4.2E-13 87.8 6.1 54 140-194 53-113 (136)
40 1hpc_A H protein of the glycin 98.4 2.2E-07 7.6E-12 79.4 4.0 46 135-180 38-84 (131)
41 3a7l_A H-protein, glycine clea 98.3 5E-07 1.7E-11 76.9 5.8 54 121-180 31-85 (128)
42 1onl_A Glycine cleavage system 98.3 7.3E-07 2.5E-11 75.9 5.8 53 140-193 44-103 (128)
43 2ii3_A Lipoamide acyltransfera 98.2 4.9E-07 1.7E-11 85.5 2.3 39 316-355 30-68 (262)
44 3ne5_B Cation efflux system pr 97.9 1.8E-05 6.2E-10 78.5 7.8 65 131-196 128-241 (413)
45 3lnn_A Membrane fusion protein 97.9 1.5E-05 5.2E-10 76.7 7.0 65 131-196 64-205 (359)
46 2f1m_A Acriflavine resistance 97.9 5.4E-06 1.8E-10 77.1 3.3 65 131-196 29-166 (277)
47 3fpp_A Macrolide-specific effl 97.8 1.9E-05 6.6E-10 75.4 6.3 64 131-195 38-189 (341)
48 3klr_A Glycine cleavage system 97.8 3.3E-05 1.1E-09 65.5 6.1 46 133-178 32-78 (125)
49 3mxu_A Glycine cleavage system 97.7 5.9E-05 2E-09 65.3 6.1 46 133-178 54-100 (143)
50 3tzu_A GCVH, glycine cleavage 97.6 6.2E-05 2.1E-09 64.7 5.6 44 133-176 49-93 (137)
51 1vf7_A Multidrug resistance pr 97.6 3.1E-05 1E-09 75.5 3.1 65 131-196 50-173 (369)
52 3hgb_A Glycine cleavage system 97.4 0.00023 7.9E-09 62.3 6.1 36 141-176 68-103 (155)
53 4dk0_A Putative MACA; alpha-ha 97.0 3.3E-05 1.1E-09 74.4 -3.6 63 131-194 39-189 (369)
54 3na6_A Succinylglutamate desuc 96.8 0.0033 1.1E-07 60.9 8.8 59 134-195 266-328 (331)
55 3cdx_A Succinylglutamatedesucc 96.6 0.0062 2.1E-07 59.3 9.0 58 135-195 277-338 (354)
56 2dn8_A Acetyl-COA carboxylase 96.4 0.0016 5.4E-08 52.1 2.9 45 149-194 5-49 (100)
57 3fmc_A Putative succinylglutam 96.4 0.0074 2.5E-07 59.3 8.2 60 133-195 298-363 (368)
58 1z6h_A Biotin/lipoyl attachmen 95.3 0.017 5.8E-07 42.6 4.3 30 164-194 2-31 (72)
59 1dcz_A Transcarboxylase 1.3S s 95.2 0.019 6.6E-07 42.9 4.3 33 161-194 8-40 (77)
60 2d5d_A Methylmalonyl-COA decar 95.2 0.025 8.5E-07 41.7 4.8 32 162-194 6-37 (74)
61 2qj8_A MLR6093 protein; struct 95.1 0.06 2.1E-06 51.7 8.4 60 133-195 265-328 (332)
62 2k32_A A; NMR {Campylobacter j 95.0 0.024 8.1E-07 45.9 4.6 32 162-194 2-33 (116)
63 2kcc_A Acetyl-COA carboxylase 94.4 0.024 8.2E-07 43.8 3.1 31 162-193 6-36 (84)
64 1f3z_A EIIA-GLC, glucose-speci 94.0 0.05 1.7E-06 47.7 4.6 58 131-193 19-115 (161)
65 2f1m_A Acriflavine resistance 93.8 0.062 2.1E-06 49.4 5.1 50 143-194 5-54 (277)
66 2gpr_A Glucose-permease IIA co 93.2 0.059 2E-06 46.9 3.7 58 131-193 14-110 (154)
67 2xha_A NUSG, transcription ant 93.1 0.087 3E-06 47.5 4.6 31 137-173 22-52 (193)
68 2ejm_A Methylcrotonoyl-COA car 92.5 0.084 2.9E-06 41.9 3.4 33 161-194 14-46 (99)
69 1ax3_A Iiaglc, glucose permeas 92.4 0.072 2.5E-06 46.8 3.1 58 131-193 19-115 (162)
70 3lnn_A Membrane fusion protein 92.4 0.16 5.6E-06 48.3 5.9 45 150-195 45-90 (359)
71 1bdo_A Acetyl-COA carboxylase; 92.4 0.1 3.4E-06 39.4 3.5 32 162-194 5-43 (80)
72 2jku_A Propionyl-COA carboxyla 92.2 0.061 2.1E-06 42.4 2.2 32 161-193 25-56 (94)
73 2l5t_A Lipoamide acyltransfera 92.1 0.14 5E-06 38.2 4.1 27 131-157 51-77 (77)
74 3fpp_A Macrolide-specific effl 91.7 0.16 5.5E-06 48.0 4.9 43 150-194 21-63 (341)
75 2xhc_A Transcription antitermi 90.4 0.26 8.8E-06 48.3 5.0 49 136-191 61-138 (352)
76 1ghj_A E2, E2, the dihydrolipo 90.4 0.23 7.9E-06 37.3 3.7 34 119-158 45-78 (79)
77 3ne5_B Cation efflux system pr 90.3 0.33 1.1E-05 47.8 5.7 54 140-194 99-154 (413)
78 1qjo_A Dihydrolipoamide acetyl 89.5 0.22 7.4E-06 37.4 2.9 34 119-158 44-77 (80)
79 3crk_C Dihydrolipoyllysine-res 89.4 0.26 8.8E-06 38.0 3.3 26 167-193 17-42 (87)
80 1vf7_A Multidrug resistance pr 89.3 0.24 8.4E-06 47.7 3.8 42 151-194 34-75 (369)
81 3d4r_A Domain of unknown funct 89.2 0.47 1.6E-05 41.8 5.2 46 131-176 107-153 (169)
82 1iyu_A E2P, dihydrolipoamide a 89.0 0.32 1.1E-05 36.4 3.6 34 119-158 42-75 (79)
83 1k8m_A E2 component of branche 89.0 0.38 1.3E-05 37.7 4.1 28 131-158 54-81 (93)
84 2auk_A DNA-directed RNA polyme 88.8 0.52 1.8E-05 42.1 5.3 42 137-180 63-104 (190)
85 1gjx_A Pyruvate dehydrogenase; 88.4 0.28 9.7E-06 36.9 2.9 28 165-193 11-38 (81)
86 2xha_A NUSG, transcription ant 86.3 0.3 1E-05 44.0 2.2 45 140-191 85-157 (193)
87 2dne_A Dihydrolipoyllysine-res 86.2 0.42 1.4E-05 38.7 2.9 26 167-193 19-44 (108)
88 2dnc_A Pyruvate dehydrogenase 86.0 0.4 1.4E-05 38.1 2.6 26 167-193 19-44 (98)
89 1y8o_B Dihydrolipoyllysine-res 84.8 0.68 2.3E-05 38.8 3.6 28 131-158 77-105 (128)
90 2k7v_A Dihydrolipoyllysine-res 83.6 0.37 1.3E-05 36.8 1.3 34 119-158 40-73 (85)
91 4dk0_A Putative MACA; alpha-ha 83.4 0.22 7.6E-06 47.5 -0.0 43 150-194 22-64 (369)
92 3n6r_A Propionyl-COA carboxyla 82.4 1.1 3.8E-05 47.2 4.8 32 161-193 612-643 (681)
93 3our_B EIIA, phosphotransferas 81.8 2.4 8.3E-05 37.8 6.1 17 176-193 121-137 (183)
94 3our_B EIIA, phosphotransferas 79.7 1.3 4.6E-05 39.5 3.7 27 133-159 115-141 (183)
95 1pmr_A Dihydrolipoyl succinylt 79.3 0.31 1.1E-05 36.8 -0.5 27 131-157 52-78 (80)
96 2bco_A Succinylglutamate desuc 77.7 1.9 6.4E-05 41.7 4.4 50 138-195 279-328 (350)
97 3lu0_D DNA-directed RNA polyme 77.0 1.9 6.4E-05 48.9 4.6 35 137-173 1002-1036(1407)
98 3hbl_A Pyruvate carboxylase; T 76.7 2 6.9E-05 48.0 4.8 31 162-193 1078-1108(1150)
99 2gpr_A Glucose-permease IIA co 75.9 1.7 5.9E-05 37.6 3.2 39 119-158 73-113 (154)
100 3va7_A KLLA0E08119P; carboxyla 75.5 2.3 7.7E-05 48.0 4.8 32 161-193 1167-1198(1236)
101 3bg3_A Pyruvate carboxylase, m 73.7 1.8 6.1E-05 46.1 3.2 31 162-193 650-680 (718)
102 2xhc_A Transcription antitermi 70.3 1.1 3.8E-05 43.8 0.6 50 140-191 125-197 (352)
103 2qf7_A Pyruvate carboxylase pr 70.1 3.1 0.00011 46.6 4.2 31 162-193 1096-1126(1165)
104 3u9t_A MCC alpha, methylcroton 68.1 1.1 3.6E-05 47.3 0.0 31 162-193 603-633 (675)
105 3dva_I Dihydrolipoyllysine-res 66.2 1.2 4.2E-05 44.4 0.0 30 131-160 52-81 (428)
106 1qpo_A Quinolinate acid phosph 63.1 5 0.00017 37.9 3.6 22 136-157 73-94 (284)
107 1brw_A PYNP, protein (pyrimidi 62.9 9.9 0.00034 38.0 5.9 41 155-196 329-400 (433)
108 3fmc_A Putative succinylglutam 61.3 6.7 0.00023 38.1 4.3 34 160-195 289-322 (368)
109 1o4u_A Type II quinolic acid p 61.3 4.5 0.00015 38.3 2.9 22 136-157 73-94 (285)
110 1x1o_A Nicotinate-nucleotide p 61.2 4.8 0.00016 38.0 3.1 22 136-157 74-95 (286)
111 2dsj_A Pyrimidine-nucleoside ( 61.1 10 0.00035 37.8 5.6 41 155-197 322-393 (423)
112 3tqv_A Nicotinate-nucleotide p 60.3 5.1 0.00017 38.0 3.1 22 136-157 77-98 (287)
113 2b7n_A Probable nicotinate-nuc 60.2 6 0.00021 36.9 3.6 22 136-157 60-81 (273)
114 3l0g_A Nicotinate-nucleotide p 59.6 5.6 0.00019 38.1 3.2 22 136-157 86-107 (300)
115 1f3z_A EIIA-GLC, glucose-speci 59.1 4.4 0.00015 35.3 2.2 26 133-158 93-118 (161)
116 3h5q_A PYNP, pyrimidine-nucleo 58.9 12 0.00041 37.5 5.7 38 156-194 333-401 (436)
117 1zy8_K Pyruvate dehydrogenase 58.4 2.1 7E-05 39.3 0.0 26 167-193 15-40 (229)
118 3gnn_A Nicotinate-nucleotide p 57.9 5.9 0.0002 37.8 3.1 22 136-157 88-109 (298)
119 3paj_A Nicotinate-nucleotide p 57.1 6.2 0.00021 38.0 3.1 22 136-157 110-131 (320)
120 1qap_A Quinolinic acid phospho 56.6 6.4 0.00022 37.3 3.1 22 136-157 87-108 (296)
121 3na6_A Succinylglutamate desuc 56.0 9.8 0.00033 36.3 4.3 35 159-195 255-289 (331)
122 1ax3_A Iiaglc, glucose permeas 53.7 4.3 0.00015 35.4 1.3 28 132-159 92-119 (162)
123 2jbm_A Nicotinate-nucleotide p 52.6 7.2 0.00025 37.0 2.7 22 136-157 73-94 (299)
124 2tpt_A Thymidine phosphorylase 52.0 9.9 0.00034 38.1 3.8 41 155-196 334-405 (440)
125 3h5q_A PYNP, pyrimidine-nucleo 49.5 8.9 0.0003 38.4 2.9 30 130-159 375-404 (436)
126 1uou_A Thymidine phosphorylase 47.1 27 0.00091 35.4 6.0 41 155-196 366-435 (474)
127 3it5_A Protease LASA; metallop 46.3 8.2 0.00028 34.0 1.9 20 137-156 84-103 (182)
128 1brw_A PYNP, protein (pyrimidi 46.2 12 0.00041 37.4 3.3 30 130-159 372-401 (433)
129 2dsj_A Pyrimidine-nucleoside ( 46.1 12 0.00041 37.3 3.3 30 130-159 364-393 (423)
130 1uou_A Thymidine phosphorylase 43.5 14 0.00049 37.3 3.4 26 133-158 410-435 (474)
131 3cdx_A Succinylglutamatedesucc 41.2 28 0.00095 33.3 4.9 35 159-195 265-299 (354)
132 3vr4_A V-type sodium ATPase ca 41.2 32 0.0011 35.8 5.6 52 139-194 130-184 (600)
133 3tuf_B Stage II sporulation pr 39.2 14 0.00048 34.1 2.4 26 133-158 130-155 (245)
134 3it5_A Protease LASA; metallop 39.2 34 0.0012 29.9 4.8 62 119-195 35-104 (182)
135 3c2e_A Nicotinate-nucleotide p 38.9 14 0.00048 34.9 2.4 22 136-157 69-96 (294)
136 2tpt_A Thymidine phosphorylase 37.6 12 0.00042 37.4 1.8 30 130-159 377-406 (440)
137 2hsi_A Putative peptidase M23; 37.3 16 0.00055 34.3 2.5 21 175-196 232-252 (282)
138 1qwy_A Peptidoglycan hydrolase 36.5 17 0.00058 34.5 2.5 21 175-196 239-259 (291)
139 3nyy_A Putative glycyl-glycine 32.4 21 0.00072 33.0 2.4 19 176-195 183-201 (252)
140 3tuf_B Stage II sporulation pr 31.3 41 0.0014 30.9 4.1 68 119-196 84-155 (245)
141 4etm_A LMPTP, low molecular we 29.0 35 0.0012 29.5 3.1 32 257-292 68-99 (173)
142 2gu1_A Zinc peptidase; alpha/b 28.7 27 0.00091 33.6 2.5 21 175-196 284-304 (361)
143 2qj8_A MLR6093 protein; struct 27.8 55 0.0019 30.8 4.5 32 162-195 258-289 (332)
144 1hpc_A H protein of the glycin 27.6 40 0.0014 28.0 3.1 27 166-193 32-59 (131)
145 1zko_A Glycine cleavage system 27.3 66 0.0023 26.9 4.4 28 165-193 40-68 (136)
146 2gu1_A Zinc peptidase; alpha/b 26.8 57 0.0019 31.3 4.4 11 164-174 245-255 (361)
147 3csq_A Morphogenesis protein 1 26.7 23 0.00077 33.8 1.6 21 137-157 250-270 (334)
148 1jf8_A Arsenate reductase; ptp 26.3 44 0.0015 27.3 3.1 32 257-292 44-75 (131)
149 2lmc_B DNA-directed RNA polyme 25.8 9.8 0.00033 29.6 -1.0 15 139-153 68-82 (84)
150 3mfy_A V-type ATP synthase alp 24.7 1.1E+02 0.0039 31.7 6.4 53 139-194 123-178 (588)
151 3lu0_D DNA-directed RNA polyme 24.6 18 0.00063 41.1 0.6 23 138-160 1107-1131(1407)
152 3rh0_A Arsenate reductase; oxi 23.7 51 0.0018 27.7 3.1 32 257-292 62-93 (148)
153 3d4r_A Domain of unknown funct 23.4 97 0.0033 27.1 4.8 43 145-199 95-137 (169)
154 2fek_A Low molecular weight pr 22.8 55 0.0019 28.0 3.2 32 257-292 65-96 (167)
155 2gi4_A Possible phosphotyrosin 22.1 39 0.0013 28.5 2.0 31 257-291 51-81 (156)
156 1yw4_A Succinylglutamate desuc 21.7 17 0.00058 34.8 -0.4 35 139-173 278-317 (341)
157 2cwd_A Low molecular weight ph 21.3 55 0.0019 27.6 2.8 31 257-292 54-84 (161)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=8.7e-45 Score=365.99 Aligned_cols=228 Identities=29% Similarity=0.446 Sum_probs=39.7
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccCC
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~~ 198 (356)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+ .|.+|++|++|.++++
T Consensus 3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT-VATVGQTLITLDAPGY 81 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCC-EeCCCCEEEEEecCCc
Confidence 589999999999999999999999999999999999999999999999999999999999997 8999999999855443
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHcCCCccccccc
Q 018410 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGT 278 (356)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~GS 278 (356)
+...... . ..+..+.. +.+.. .+.....+...+.... .......+.++++||+|||||+|+||||++|+||
T Consensus 82 ~~~~~~~---~--~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gt 152 (428)
T 3dva_I 82 ENMTFKG---Q--EQEEAKKE--EKTET-VSKEEKVDAVAPNAPA-AEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGT 152 (428)
T ss_dssp -------------------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCC
T ss_pred ccccccc---c--cccccccC--CCccc-CCccccccCCCccccc-cccccccccccccCHHHHHHHHHcCCCHHHCCCC
Confidence 3211100 0 00000000 00000 0000000000000000 0011112246789999999999999999999999
Q ss_pred CCCCcccHhhHHHHHHhcCCCCCCCC--CCC--CC-C--CCCCCCcccccCchHHHHHHHHHHhhccCCceEEEEeEEEe
Q 018410 279 GPNGLIVKADIEDYLASRGKEVPAKA--PKG--KD-V--AAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICV 351 (356)
Q Consensus 279 Gp~GRItk~DV~~~~~~~~~~~~a~~--~~~--~~-~--~~~~~~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~evdv 351 (356)
||+|||+++||++|+.......+... +.. +. + ......++++||++|||+||+||++||++|||||++.+|||
T Consensus 153 G~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDv 232 (428)
T 3dva_I 153 GKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADV 232 (428)
T ss_dssp STTSCCCTTTTTTTSCC---------------------------------------------------------------
T ss_pred CCCCceeHHHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeH
Confidence 99999999999999743211110000 000 00 0 00112367899999999999999999999999999999999
Q ss_pred ccCCC
Q 018410 352 DNLMG 356 (356)
Q Consensus 352 t~L~~ 356 (356)
|+|++
T Consensus 233 t~l~~ 237 (428)
T 3dva_I 233 TKLVA 237 (428)
T ss_dssp -----
T ss_pred HHHHH
Confidence 99974
No 2
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.97 E-value=1.5e-32 Score=256.32 Aligned_cols=166 Identities=42% Similarity=0.641 Sum_probs=38.5
Q ss_pred ceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCee-eeCCCEEEEEecc
Q 018410 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKE-IKVGEVIAITVEE 196 (356)
Q Consensus 118 ~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~-V~vG~~la~i~~~ 196 (356)
+++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+ . |.+|++|++|.++
T Consensus 3 ~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~-~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 3 PIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS-KNIRLGSLIGLIVEE 81 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCC-eeecCCCEEEEEecc
Confidence 3689999999999999999999999999999999999999999999999999999999999997 6 9999999988543
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCccCChHHHHHHHHcCCCccccc
Q 018410 197 EEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIK 276 (356)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ASP~ARkLA~e~gIDLs~V~ 276 (356)
+++..... .+.. .. .+... ..... +.....+. ...+.. ........++++||+|||||+|+||||++|+
T Consensus 82 ~~~~~~~~--~~~~-~~--~~~~~-~~~~~--~~~~~~~~-~~~~~~--~~~~~~~~~~~asP~vRklAre~gVDL~~V~ 150 (229)
T 1zy8_K 82 GEDWKHVE--IPKD-VG--PPPPV-SKPSE--PRPSPEPQ-ISIPVK--KEHIPGTLRFRLSPAARNILEKHSLDASQGT 150 (229)
T ss_dssp -----------------------------------------------------------CBCHHHHHHHHHTTCCSSSSC
T ss_pred Cccccccc--cccc-cc--ccccc-ccCCC--cccccccc-cCCCcc--cccccccccccCChHHHHHHHHcCCCccccC
Confidence 32211000 0000 00 00000 00000 00000000 000000 0000111357899999999999999999999
Q ss_pred ccCCCCcccHhhHHHHHHh
Q 018410 277 GTGPNGLIVKADIEDYLAS 295 (356)
Q Consensus 277 GSGp~GRItk~DV~~~~~~ 295 (356)
|||++|||+++||++|++.
T Consensus 151 GTGp~GRItk~DV~~~~~~ 169 (229)
T 1zy8_K 151 ATGPRGIFTKEDALKLVQL 169 (229)
T ss_dssp CCSTTSCBCHHHHHHHHHH
T ss_pred CCCCCCceehHHHHHHHhh
Confidence 9999999999999999863
No 3
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.85 E-value=7.3e-21 Score=162.80 Aligned_cols=97 Identities=46% Similarity=0.818 Sum_probs=81.0
Q ss_pred cceeccccCCCCCCceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCee
Q 018410 104 HLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKE 183 (356)
Q Consensus 104 ~~~r~~~~~~~~~~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~ 183 (356)
+.+|.|.....+|.+++|.||+||++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|++.
T Consensus 13 ~~~~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~ 92 (128)
T 1y8o_B 13 RLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD 92 (128)
T ss_dssp ----------CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS
T ss_pred hhccccCccccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee
Confidence 56788888889999999999999999999999999999999999999999999999999999999999999999999526
Q ss_pred eeCCCEEEEEeccCCcc
Q 018410 184 IKVGEVIAITVEEEEDI 200 (356)
Q Consensus 184 V~vG~~la~i~~~~~~~ 200 (356)
|.+|++|++|.+.+++.
T Consensus 93 V~~G~~L~~i~~~~~~~ 109 (128)
T 1y8o_B 93 VPLGTPLCIIVEKEADI 109 (128)
T ss_dssp EETTCEEEEEESSGGGG
T ss_pred ecCCCEEEEEecCccch
Confidence 99999999986554443
No 4
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=152.97 Aligned_cols=87 Identities=53% Similarity=0.879 Sum_probs=80.0
Q ss_pred CCCCceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 114 GLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 114 ~~~~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.||++++|.||+||++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|++.|.+|++|+++
T Consensus 3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i 82 (108)
T 2dne_A 3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICIT 82 (108)
T ss_dssp CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEE
T ss_pred CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEE
Confidence 47888999999999999999999999999999999999999999999999999999999999999995259999999998
Q ss_pred eccCCcc
Q 018410 194 VEEEEDI 200 (356)
Q Consensus 194 ~~~~~~~ 200 (356)
.+.++++
T Consensus 83 ~~~~~~~ 89 (108)
T 2dne_A 83 VGKPEDI 89 (108)
T ss_dssp ESCHHHH
T ss_pred ecCccch
Confidence 6554443
No 5
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.80 E-value=4.2e-19 Score=141.10 Aligned_cols=81 Identities=48% Similarity=0.879 Sum_probs=76.4
Q ss_pred CCCceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 115 LPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 115 ~~~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
||.+++|.||+||+++.+|+|.+|++++||.|++||+||+||+||+.++|.||.+|+|.++++++|++.|.+|++|+++.
T Consensus 2 ~~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~ 81 (87)
T 3crk_C 2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81 (87)
T ss_dssp CCCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEE
T ss_pred CCcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEE
Confidence 57788999999999999999999999999999999999999999999999999999999999999951599999999985
Q ss_pred c
Q 018410 195 E 195 (356)
Q Consensus 195 ~ 195 (356)
+
T Consensus 82 ~ 82 (87)
T 3crk_C 82 E 82 (87)
T ss_dssp S
T ss_pred c
Confidence 4
No 6
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=7.4e-19 Score=143.34 Aligned_cols=80 Identities=55% Similarity=0.918 Sum_probs=75.7
Q ss_pred CCceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeee-eCCCEEEEEe
Q 018410 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEI-KVGEVIAITV 194 (356)
Q Consensus 116 ~~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V-~vG~~la~i~ 194 (356)
+.+++|.||+||++|.+|+|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .| .+|++|+++.
T Consensus 5 ~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~-~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS-KNIRLGSLIGLIV 83 (98)
T ss_dssp CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTC-CCEESSCEEEEEE
T ss_pred cccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCC-EEcCCCCEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999999997 88 9999999985
Q ss_pred cc
Q 018410 195 EE 196 (356)
Q Consensus 195 ~~ 196 (356)
..
T Consensus 84 ~~ 85 (98)
T 2dnc_A 84 EE 85 (98)
T ss_dssp CT
T ss_pred cC
Confidence 53
No 7
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.76 E-value=2.3e-18 Score=138.98 Aligned_cols=77 Identities=25% Similarity=0.400 Sum_probs=74.0
Q ss_pred CceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 117 PHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 117 ~~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
..++|.||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|.+|++|+++.
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~-~V~~G~~l~~i~ 79 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDD-IAYVGKPLVDIE 79 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSC-EECTTSEEEEEE
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCC-EeCCCCEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999997 899999999884
No 8
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.72 E-value=1.5e-17 Score=129.28 Aligned_cols=75 Identities=31% Similarity=0.625 Sum_probs=72.5
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
++|.||++|+++.+|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+ .|..|++|+.+.
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~ 76 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGD-TVLSGELLGKLT 76 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTC-EECTTCEEEEEC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcC-EECCCCEEEEEe
Confidence 579999999999999999999999999999999999999999999999999999999999997 899999999883
No 9
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.67 E-value=1.5e-16 Score=122.81 Aligned_cols=74 Identities=35% Similarity=0.543 Sum_probs=72.0
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
++|.||++|+++.+|+|.+|++++||.|++||+|++||++|+..+|.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i 75 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQ-VVPVGSTLLQI 75 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTC-EECSCSEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcC-EECCCCEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999997 89999999987
No 10
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.66 E-value=2.4e-16 Score=122.45 Aligned_cols=74 Identities=28% Similarity=0.428 Sum_probs=70.9
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
++|.||++|++ +|+|.+|++++||.|++||+|++||++|+..+|.||.+|+|.++++++|+ .|..|++|+.+..
T Consensus 3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~-~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEV 76 (80)
T ss_dssp EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTC-EECTTCCCEEEES
T ss_pred eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCC-EECCCCEEEEEEc
Confidence 58999999997 99999999999999999999999999999999999999999999999997 8999999999844
No 11
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.66 E-value=5.4e-18 Score=132.36 Aligned_cols=74 Identities=30% Similarity=0.581 Sum_probs=71.7
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
.+|.||+||+++.+|+|.+|++++||.|++||+||+||+||+..+|.||++|+|.++++++|+ .|..|++|+.+
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~G~~l~~i 76 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT-TVTSRQILGRL 76 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTC-EECSSSEEEBC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcC-EECCCCEEEEE
Confidence 478999999999999999999999999999999999999999999999999999999999997 89999999976
No 12
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.63 E-value=1e-15 Score=118.86 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=69.2
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
++|.||++|++ + +|.+|++++||.|++||+|++||++|+..+|.||.+|+|.++++++|+ .|..|++|+.+..
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~-~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGD-KLKEGDAIIELEP 74 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTC-EEETTSEEEEEEC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCC-EECCCCEEEEEec
Confidence 47899999996 7 999999999999999999999999999999999999999999999997 8999999998843
No 13
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.59 E-value=4.9e-16 Score=121.07 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=71.3
Q ss_pred ceEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 118 ~~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.++|.||++| ++..|+|.+|++++||.|++||+|++||++|+..+|.||.+|+|.++++++|+ .|..|++|+.+.
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~ 76 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD-KISEGGLIVVVE 76 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSC-EECSSSCCCEEC
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCC-EeCCCCEEEEEE
Confidence 3588999999 68999999999999999999999999999999999999999999999999997 899999999883
No 14
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.44 E-value=1.2e-14 Score=114.68 Aligned_cols=70 Identities=29% Similarity=0.441 Sum_probs=66.1
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
++|.+|.+ |+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++.+|+ .|..|++|+.|..
T Consensus 3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~-~V~~G~~l~~i~~ 72 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEV 72 (85)
T ss_dssp SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTC-CBCTTSEEEEEEC
T ss_pred cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCC-EECCCCEEEEEEc
Confidence 46789988 8999999999999999999999999999999999999999999999997 8999999999854
No 15
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.39 E-value=1.4e-12 Score=98.72 Aligned_cols=63 Identities=21% Similarity=0.354 Sum_probs=60.4
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
..|+|.+|++++||.|++||+|++||++|...+|.||.+|+|.++++.+|+ .|..|++|+.+.
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~-~V~~G~~l~~i~ 68 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGD-FVNEGDVLLELS 68 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTC-EECTTCEEEEEG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCC-EECCCCEEEEEe
Confidence 469999999999999999999999999999999999999999999999997 899999999884
No 16
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.38 E-value=6.4e-13 Score=104.78 Aligned_cols=63 Identities=22% Similarity=0.370 Sum_probs=59.8
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
.+|+|.+|++++||.|++||+|++||++|+.++|.||.+|+|.+++ .+|+ .|..|++|+.+.+
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~-~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGA-VLEAGCVVARLEL 74 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTC-CCCTTCCCEEEEC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCC-EECCCCEEEEEeC
Confidence 5689999999999999999999999999999999999999999999 9997 8999999998844
No 17
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=110.22 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCCCCCceEEecCCCCCCC----ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCC
Q 018410 112 DSGLPPHQEIGMPSLSPTM----QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVG 187 (356)
Q Consensus 112 ~~~~~~~~~i~~P~lg~s~----~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG 187 (356)
+..+....+|.+|...... ..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++.+.+|+ .|..|
T Consensus 9 ~~~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~-~V~~G 87 (94)
T 2jku_A 9 SGVDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGD-TVGEG 87 (94)
T ss_dssp ---------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------
T ss_pred ccccccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcC-EECCC
Confidence 3334445688999988764 689999999999999999999999999999999999999999999999997 89999
Q ss_pred CEEEEE
Q 018410 188 EVIAIT 193 (356)
Q Consensus 188 ~~la~i 193 (356)
++|+.+
T Consensus 88 ~~L~~i 93 (94)
T 2jku_A 88 DLLVEL 93 (94)
T ss_dssp ------
T ss_pred CEEEEE
Confidence 999875
No 18
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=5e-12 Score=102.64 Aligned_cols=62 Identities=23% Similarity=0.419 Sum_probs=59.4
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
..|+|.+|++++||.|++||+|++||++|+..+|.||.+|+|. +++++|+ .|..|++|+.+.
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~-~V~~G~~l~~i~ 85 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGA-VLEAGCVVARLE 85 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTC-EECSSCEEEEEC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCC-EECCCCEEEEEE
Confidence 5699999999999999999999999999999999999999999 9999997 899999999884
No 19
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=99.31 E-value=1.3e-12 Score=89.93 Aligned_cols=40 Identities=33% Similarity=0.646 Sum_probs=37.4
Q ss_pred ccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHH
Q 018410 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (356)
Q Consensus 255 v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~ 294 (356)
+++||+||+||+|+||||+.|+|||++|||+++||++|+.
T Consensus 1 ~~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 40 (41)
T 2eq9_C 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41)
T ss_dssp CCBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred CCCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence 3579999999999999999999999999999999999863
No 20
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=99.30 E-value=1.3e-12 Score=97.01 Aligned_cols=43 Identities=44% Similarity=0.752 Sum_probs=39.3
Q ss_pred CCccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHHh
Q 018410 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295 (356)
Q Consensus 253 ~~v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~~ 295 (356)
.++++||+||+||+|+||||+.|+|||++|||+++||++|++.
T Consensus 6 ~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~ 48 (58)
T 3rnm_E 6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 48 (58)
T ss_dssp --CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhh
Confidence 3678999999999999999999999999999999999999864
No 21
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.27 E-value=1.9e-11 Score=92.54 Aligned_cols=62 Identities=24% Similarity=0.398 Sum_probs=59.4
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|.|.+|++++||.|++||+|++++++|...+|.||.+|+|.++.+.+|+ .|..|++|+.+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~v~~g~~l~~i 73 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGE-AVDTGQPLIEL 73 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTC-EECTTCEEEEE
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcC-EECCCCEEEEE
Confidence 569999999999999999999999999999999999999999999999997 89999999876
No 22
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.25 E-value=9.6e-12 Score=96.37 Aligned_cols=56 Identities=25% Similarity=0.430 Sum_probs=53.9
Q ss_pred EEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
+|++++||.|++||.|++||++|+..+|.||++|+|.++++++|+ .|..|++|+.|
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~V~~G~~L~~i 79 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQ-PVEFDEPLVVI 79 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTC-EECTTCEEEEE
T ss_pred ccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCC-EECCCCEEEEE
Confidence 479999999999999999999999999999999999999999997 89999999976
No 23
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=99.25 E-value=4e-12 Score=87.06 Aligned_cols=37 Identities=38% Similarity=0.587 Sum_probs=35.8
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 293 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~ 293 (356)
+||+||+||+|+|||++.|+|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence 6999999999999999999999999999999999986
No 24
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.24 E-value=2.4e-11 Score=93.10 Aligned_cols=62 Identities=23% Similarity=0.400 Sum_probs=59.4
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|.|.+|++++||.|++||+|++|+++|+..+|.||.+|+|.++.+.+|+ .|..|++|+.|
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~-~v~~G~~l~~i 76 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERD-AVQGGQGLIKI 76 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTC-BCCBTSEEEEE
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcC-EECCCCEEEEE
Confidence 558999999999999999999999999999999999999999999999997 89999999876
No 25
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=99.23 E-value=3e-12 Score=87.69 Aligned_cols=37 Identities=41% Similarity=0.587 Sum_probs=34.9
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 293 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~ 293 (356)
+||+||+||+++||||+.|.|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence 6999999999999999999999999999999998775
No 26
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.21 E-value=2.4e-11 Score=98.50 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=60.9
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++.+|+ .|..|++|+.|.+
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~-~V~~G~~L~~i~~ 84 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGA-QANRHTPLVEFEE 84 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTE-EECTTCBCEEECC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCC-EECCCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999997 8999999999854
No 27
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=99.19 E-value=1.2e-11 Score=88.62 Aligned_cols=41 Identities=41% Similarity=0.741 Sum_probs=38.5
Q ss_pred CccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHH
Q 018410 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (356)
Q Consensus 254 ~v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~ 294 (356)
++++||+||+||+|+||||+.|+|||++|||+++||++|+.
T Consensus 6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~ 46 (49)
T 1w85_I 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46 (49)
T ss_dssp CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence 45689999999999999999999999999999999999974
No 28
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=99.16 E-value=7.3e-12 Score=90.51 Aligned_cols=40 Identities=43% Similarity=0.605 Sum_probs=37.4
Q ss_pred CccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHH
Q 018410 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 293 (356)
Q Consensus 254 ~v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~ 293 (356)
++++||+||+||+|+||||+.|+|||++|||+++||+.|+
T Consensus 9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~ 48 (51)
T 1bal_A 9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL 48 (51)
T ss_dssp SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence 4568999999999999999999999999999999998875
No 29
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.16 E-value=5.3e-11 Score=126.04 Aligned_cols=61 Identities=28% Similarity=0.410 Sum_probs=59.2
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.+|++++|+ .|.+|++|+.|
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~-~v~~g~~l~~i 680 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGN-SLAVDDVIMEF 680 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTC-EECTTCEEEEE
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcC-EeCCCCEEEEE
Confidence 39999999999999999999999999999999999999999999999997 89999999986
No 30
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.14 E-value=6.3e-11 Score=132.60 Aligned_cols=60 Identities=22% Similarity=0.413 Sum_probs=58.9
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
|+|.+|+|++||.|++||+||+||+||++++|+||.+|+|.+|++++|+ .|.+|++|++|
T Consensus 1176 G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~-~V~~G~~l~~i 1235 (1236)
T 3va7_A 1176 GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGD-MVEAGDLVAVI 1235 (1236)
T ss_dssp EEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTC-EECTTCEEEEE
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcC-EeCCCCEEEEe
Confidence 9999999999999999999999999999999999999999999999997 89999999987
No 31
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=99.10 E-value=3.1e-11 Score=91.29 Aligned_cols=42 Identities=36% Similarity=0.538 Sum_probs=39.2
Q ss_pred CccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHHh
Q 018410 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295 (356)
Q Consensus 254 ~v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~~ 295 (356)
++++||+||+||+++||||+.|+|||++|||+++||++|++.
T Consensus 9 ~~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 50 (64)
T 2f60_K 9 RFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL 50 (64)
T ss_dssp HHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 467899999999999999999999999999999999999853
No 32
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=89.53 Aligned_cols=42 Identities=43% Similarity=0.744 Sum_probs=39.5
Q ss_pred CccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHHh
Q 018410 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295 (356)
Q Consensus 254 ~v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~~ 295 (356)
+++++|+||+||+|+||||..|+|||++|||+++||++|+..
T Consensus 15 ~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 56 (70)
T 2coo_A 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK 56 (70)
T ss_dssp SCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence 567899999999999999999999999999999999999864
No 33
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=99.08 E-value=6.5e-11 Score=88.94 Aligned_cols=42 Identities=43% Similarity=0.729 Sum_probs=39.4
Q ss_pred CccCChHHHHHHHHcCCCcccccccCCCCcccHhhHHHHHHh
Q 018410 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295 (356)
Q Consensus 254 ~v~ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~~~~ 295 (356)
++++||+||+||+++||||+.|.|||++|||+++||++|+..
T Consensus 4 ~~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~ 45 (62)
T 1w4i_A 4 EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEE 45 (62)
T ss_dssp SSEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHH
T ss_pred cccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 467899999999999999999999999999999999999864
No 34
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.07 E-value=1.8e-10 Score=128.20 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=60.3
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
..|+|++|+|++||.|++||+||+||+||+.++|+||.+|+|.+|++++|+ .|.+|++|+.|.
T Consensus 1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~-~V~~g~~l~~i~ 1146 (1150)
T 3hbl_A 1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD-TIATGDLLIEIE 1146 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTC-EECTTBEEEEEC
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCEEEEEe
Confidence 349999999999999999999999999999999999999999999999997 899999999883
No 35
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.06 E-value=1.6e-11 Score=129.96 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
..|+|++|+|++||.|++||+||+||+||++++|+||.+|+|.+|++++|+ .|.+|++|+.+.
T Consensus 609 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~-~v~~g~~l~~i~ 671 (675)
T 3u9t_A 609 MNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGE-LVEEGTPLVELD 671 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcC-CcCCCCEEEEEe
Confidence 348999999999999999999999999999999999999999999999997 899999999883
No 36
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.82 E-value=4.6e-09 Score=86.57 Aligned_cols=66 Identities=24% Similarity=0.330 Sum_probs=59.6
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEecccee-----------------------------EEEecCCCeEEEEEeecCCC
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKAT-----------------------------VEMECMEEGYLAKIVKGDGS 181 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~-----------------------------~ei~Ap~~G~I~ki~v~eG~ 181 (356)
..|.|.+|++++||.|++||+|++|++.++. ..|.||.+|+|.++.+.+|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 4699999999999999999999999998655 48999999999999999997
Q ss_pred eeeeCC-CEEEEEeccC
Q 018410 182 KEIKVG-EVIAITVEEE 197 (356)
Q Consensus 182 ~~V~vG-~~la~i~~~~ 197 (356)
.|..| ++|+.|.+.+
T Consensus 88 -~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 88 -YVSASTTELVRVTNLN 103 (116)
T ss_dssp -EECTTTSCCEEEECSC
T ss_pred -EEcCCCcEEEEEECCC
Confidence 89999 9999986543
No 37
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.78 E-value=1.6e-09 Score=115.26 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=59.2
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|+|++|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+ .|..|++|+.|
T Consensus 656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i 717 (718)
T 3bg3_A 656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDM-TLEGDDLILEI 717 (718)
T ss_dssp SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEE-EECSSCEEECB
T ss_pred CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCC-EeCCCCEEEEe
Confidence 359999999999999999999999999999999999999999999999997 89999999865
No 38
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.74 E-value=4.4e-09 Score=117.28 Aligned_cols=62 Identities=24% Similarity=0.471 Sum_probs=53.5
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-.|+|.+|+|++||.|++||+|++||+||+.++|.||.+|+|.++++++|+ .|..|++|+.|
T Consensus 1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i 1163 (1165)
T 2qf7_A 1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGD-QIDAKDLLAVY 1163 (1165)
T ss_dssp SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSC-EECTTBEEEEC
T ss_pred CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 349999999999999999999999999999999999999999999999997 89999999876
No 39
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.72 E-value=1.2e-08 Score=87.78 Aligned_cols=54 Identities=22% Similarity=0.321 Sum_probs=49.9
Q ss_pred ccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEE---eecCCCeeee---CCC-EEEEEe
Q 018410 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI---VKGDGSKEIK---VGE-VIAITV 194 (356)
Q Consensus 140 v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki---~v~eG~~~V~---vG~-~la~i~ 194 (356)
+++||.|++||+||+||++|+..+|.||.+|+|.+| ++.+|+ .|. .|+ .|+.|.
T Consensus 53 p~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~-~Vn~dp~g~GwL~~i~ 113 (136)
T 1zko_A 53 PEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPE-LINKDPEGEGWLFKME 113 (136)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTT-HHHHCTTTTTCCEEEE
T ss_pred cCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCcc-CcccCCCCCeEEEEEE
Confidence 499999999999999999999999999999999999 888997 888 888 888774
No 40
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.36 E-value=2.2e-07 Score=79.43 Aligned_cols=46 Identities=22% Similarity=0.201 Sum_probs=40.2
Q ss_pred EEEEEc-cCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCC
Q 018410 135 IARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (356)
Q Consensus 135 I~~W~v-~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG 180 (356)
|+...+ ++||.|++||+||+||++|+..+|.||.+|+|.++....+
T Consensus 38 i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~ 84 (131)
T 1hpc_A 38 VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLT 84 (131)
T ss_dssp EEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHH
T ss_pred ceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhh
Confidence 445544 9999999999999999999999999999999999975443
No 41
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.34 E-value=5e-07 Score=76.90 Aligned_cols=54 Identities=17% Similarity=0.106 Sum_probs=43.7
Q ss_pred EecCCCCCCCceEEEEEEE-ccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCC
Q 018410 121 IGMPSLSPTMQEGNIARWL-KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (356)
Q Consensus 121 i~~P~lg~s~~eg~I~~W~-v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG 180 (356)
+.+|.+|+ |+... .++||.|++||+||+||++|+..+|.||.+|+|.++....+
T Consensus 31 ~a~~~lG~------i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~ 85 (128)
T 3a7l_A 31 HAQELLGD------MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALS 85 (128)
T ss_dssp HHHHHHCS------EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGG
T ss_pred HHhccCCc------eEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhc
Confidence 34555554 33333 49999999999999999999999999999999999976443
No 42
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.29 E-value=7.3e-07 Score=75.90 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=44.0
Q ss_pred ccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeec---CCCeee---eCCC-EEEEE
Q 018410 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG---DGSKEI---KVGE-VIAIT 193 (356)
Q Consensus 140 v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~---eG~~~V---~vG~-~la~i 193 (356)
.++||.|++||+||+||++|+..+|.||.+|+|.++... ..+ .| +-|+ -|+.+
T Consensus 44 p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~-lvn~dpy~~gWl~~i 103 (128)
T 1onl_A 44 PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPE-LVNQDPYGEGWIFRL 103 (128)
T ss_dssp BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTT-HHHHCTTTTTCCEEE
T ss_pred cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChh-hhccCCCCCccEEEE
Confidence 499999999999999999999999999999999999754 343 34 4565 66655
No 43
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=98.17 E-value=4.9e-07 Score=85.50 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=36.0
Q ss_pred CcccccCchHHHHHHHHHHhhccCCceEEEEeEEEeccCC
Q 018410 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (356)
Q Consensus 316 ~~~~vpmS~mRK~IA~rL~~S~~tiPH~tl~~evdvt~L~ 355 (356)
.++++||++|||+||+||++|+ ++||||++.++|||+|+
T Consensus 30 ~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~ 68 (262)
T 2ii3_A 30 KDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELV 68 (262)
T ss_dssp CCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHH
T ss_pred CcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHH
Confidence 4678999999999999999997 69999999999999885
No 44
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.90 E-value=1.8e-05 Score=78.54 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=57.5
Q ss_pred ceEEEEEEEc-cCCCEEecCCeEEEEecc------------------------------------------------cee
Q 018410 131 QEGNIARWLK-KEGDKVSPGEVLCEVETD------------------------------------------------KAT 161 (356)
Q Consensus 131 ~eg~I~~W~v-~~Gd~V~~Gd~L~eVETd------------------------------------------------Ka~ 161 (356)
..|.|.+++| ++||.|++||+|++|++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 5699999998 999999999999999941 235
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEecc
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~ 196 (356)
..|.||++|+|.++.+.+|+ .|..|++|+.|.+.
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~-~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGM 241 (413)
T ss_dssp EEEECSSSEEEEECCCCTTC-EECTTSCSEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCC-EECCCCcEEEEeCC
Confidence 68999999999999999997 99999999988653
No 45
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.90 E-value=1.5e-05 Score=76.68 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=57.5
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccce--------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa-------------------------------------------------- 160 (356)
..|.|.++++++||.|++||+|++|++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999987532
Q ss_pred --------------------------eEEEecCCCeEEEEEeecCCCeeeeC-CCEEEEEecc
Q 018410 161 --------------------------TVEMECMEEGYLAKIVKGDGSKEIKV-GEVIAITVEE 196 (356)
Q Consensus 161 --------------------------~~ei~Ap~~G~I~ki~v~eG~~~V~v-G~~la~i~~~ 196 (356)
...|.||++|+|..+.+..|+ .|.. |++|+.|.+.
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~~g~~l~~i~~~ 205 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGA-YWNDTTASLMTVADL 205 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTC-EECCSSCCSEEEECC
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCc-eeCCCCcceEEEecC
Confidence 357999999999999999997 8998 9999988653
No 46
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.88 E-value=5.4e-06 Score=77.12 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=56.5
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccc---------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK--------------------------------------------------- 159 (356)
..|.|.+|+|++||.|++||+|++|++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 45999999999999999999999998742
Q ss_pred --------------------eeEEEecCCCeEEEEEeecCCCeeeeCC--CEEEEEecc
Q 018410 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVEE 196 (356)
Q Consensus 160 --------------------a~~ei~Ap~~G~I~ki~v~eG~~~V~vG--~~la~i~~~ 196 (356)
....|.||++|+|..+.+.+|+ .|..| ++|+.|.+.
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~-~v~~g~~~~l~~i~~~ 166 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQL 166 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTC-EECTTCSSCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCC-EEcCCCCceeEEEecC
Confidence 1247999999999999999997 99999 589988653
No 47
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.83 E-value=1.9e-05 Score=75.40 Aligned_cols=64 Identities=16% Similarity=0.248 Sum_probs=55.6
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccc---------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK--------------------------------------------------- 159 (356)
..|.|.+|++++||.|++||+|++|++.-
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 45999999999999999999999998742
Q ss_pred ----------------------------------eeEEEecCCCeEEEEEeecCCCeeeeCCCE---EEEEec
Q 018410 160 ----------------------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEV---IAITVE 195 (356)
Q Consensus 160 ----------------------------------a~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~---la~i~~ 195 (356)
....|.||++|+|.++.+..|+ .|..|++ |+.+.+
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~~~~l~~i~~ 189 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQ-TVIAAQQAPNILTLAD 189 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTC-EECCTTSCCCCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCC-EEecCCCCceEEEEec
Confidence 1145999999999999999997 8999987 887755
No 48
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.78 E-value=3.3e-05 Score=65.52 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=39.9
Q ss_pred EEEEEEEc-cCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeec
Q 018410 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178 (356)
Q Consensus 133 g~I~~W~v-~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~ 178 (356)
|.|+.... ++|+.|++||.++.||++|+..+|.||.+|+|.++...
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~ 78 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKA 78 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhh
Confidence 45555544 79999999999999999999999999999999988643
No 49
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.66 E-value=5.9e-05 Score=65.32 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=38.9
Q ss_pred EEEEEEEc-cCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeec
Q 018410 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178 (356)
Q Consensus 133 g~I~~W~v-~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~ 178 (356)
|.|+-... ++|+.|++||.++.||+.|+..+|.||.+|+|.++...
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~ 100 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA 100 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence 34444433 78999999999999999999999999999999988643
No 50
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.62 E-value=6.2e-05 Score=64.73 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=38.3
Q ss_pred EEEEEEEc-cCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 133 g~I~~W~v-~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
|.|+.... ++|++|++||.++.||++|+..+|.||.+|+|.++.
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN 93 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN 93 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence 34444433 899999999999999999999999999999999885
No 51
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.55 E-value=3.1e-05 Score=75.47 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=56.1
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccce--------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa-------------------------------------------------- 160 (356)
..|.|.++++++||.|++||+|++|++...
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999986421
Q ss_pred -------eEEEecCCCeEEEEEeecCCCeeeeCC--CEEEEEecc
Q 018410 161 -------TVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVEE 196 (356)
Q Consensus 161 -------~~ei~Ap~~G~I~ki~v~eG~~~V~vG--~~la~i~~~ 196 (356)
...|.||++|+|..+.+.+|+ .|..| ++|+.|.+.
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~-~V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGA-LVTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTC-EECTTCSSCSEEEECC
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCC-eEcCCCCceeEEEecC
Confidence 247999999999999999997 89995 899888653
No 52
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.38 E-value=0.00023 Score=62.32 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=34.7
Q ss_pred cCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEe
Q 018410 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (356)
Q Consensus 141 ~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~ 176 (356)
++|+.|++||.++.||+.|+..+|.||.+|+|.++.
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN 103 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 103 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence 799999999999999999999999999999999875
No 53
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=97.00 E-value=3.3e-05 Score=74.43 Aligned_cols=63 Identities=17% Similarity=0.355 Sum_probs=53.6
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccce--------------------------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa-------------------------------------------------- 160 (356)
..|.|.++++++||.|++||+|++|++...
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 458999999999999999999999987521
Q ss_pred -----------------------------------eEEEecCCCeEEEEEeecCCCeeeeCCCE---EEEEe
Q 018410 161 -----------------------------------TVEMECMEEGYLAKIVKGDGSKEIKVGEV---IAITV 194 (356)
Q Consensus 161 -----------------------------------~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~---la~i~ 194 (356)
...|.||++|+|.++.+.+|+ .|..|++ |+.+.
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQ-TVNSNQTTPTIIKVA 189 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTC-BCCTTTSCCCCBBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCC-CccCCCCcceEEEEc
Confidence 124999999999999999997 8999998 65553
No 54
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.81 E-value=0.0033 Score=60.89 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=49.3
Q ss_pred EEEEEEccCCCEEecCCeEEEEec----cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 134 NIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 134 ~I~~W~v~~Gd~V~~Gd~L~eVET----dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
-+...+++.||.|++||+|++|.. .....+|.||.+|+|.... ..- .|..|+.|+.|..
T Consensus 266 Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~-~V~~G~~l~~Ia~ 328 (331)
T 3na6_A 266 GLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPG-MIKSGDCAAVIGV 328 (331)
T ss_dssp EEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSS-EECTTCEEEEEEC
T ss_pred eEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCC-ccCCCCEEEEEec
Confidence 466889999999999999999987 3567899999999997543 443 6999999998854
No 55
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.59 E-value=0.0062 Score=59.30 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=50.3
Q ss_pred EEEEEccCCCEEecCCeEEEEec----cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 135 IARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 135 I~~W~v~~Gd~V~~Gd~L~eVET----dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
+.+..++.||.|++||+|+.|+. .+...+|.||.+|+|..+ .... .|..|+.|+.|..
T Consensus 277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~-~V~~Gd~l~~ia~ 338 (354)
T 3cdx_A 277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPG-RVTRGDAVAVVME 338 (354)
T ss_dssp EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSS-EECTTCEEEEEEE
T ss_pred EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCC-ccCCCCEEEEEee
Confidence 67888999999999999999997 578899999999999755 4665 7999999998854
No 56
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.41 E-value=0.0016 Score=52.15 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=40.7
Q ss_pred CCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 149 GEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 149 Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
|..+|.++..+-...|.||.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~le 49 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGG-HVEAGSSYAEME 49 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTE-EECTTCEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEE
Confidence 556788888888889999999999999999997 899999999883
No 57
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=96.40 E-value=0.0074 Score=59.31 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=50.0
Q ss_pred EEEEEEEccCCCEEecCCeEEEEec------cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVET------DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVET------dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
+=|....++.||.|++||+|++|-. .....+|.||.+|+|.-. ...- .|..|+.|+.|..
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~--~~~p-~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH--FASA-SVHQGTELYKVMT 363 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE--CSSS-EECTTCEEEEEEE
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE--eCCC-ccCCCCEEEEEee
Confidence 3456799999999999999999998 567889999999999744 4454 7999999998753
No 58
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=95.32 E-value=0.017 Score=42.57 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=28.0
Q ss_pred EecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 164 i~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
|.||.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 2 v~a~~~G~v~~~~v~~G~-~V~~G~~l~~i~ 31 (72)
T 1z6h_A 2 VSIQMAGNLWKVHVKAGD-QIEKGQEVAILE 31 (72)
T ss_dssp EECCSSEEEEEECCCTTC-EECTTCEEEEEE
T ss_pred EECcccEEEEEEEcCCcC-EECCCCEEEEEE
Confidence 679999999999999998 899999999983
No 59
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=95.19 E-value=0.019 Score=42.88 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=30.0
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
...|.||.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~-~V~~G~~L~~l~ 40 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGD-TVKAGQTVLVLE 40 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTC-EECTTSEEEEEE
T ss_pred CeEEECCCCEEEEEEEcCCcC-EEcCCCEEEEEE
Confidence 356899999999999999998 899999999884
No 60
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=95.16 E-value=0.025 Score=41.70 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=29.3
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
..|.||.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~-~V~~G~~l~~i~ 37 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGD-RVRVGQGLLVLE 37 (74)
T ss_dssp CEEECSSCEEEEEECCCTTC-EECTTCEEEEEE
T ss_pred eEEecCCCEEEEEEEcCCCC-EeCCCCEEEEEe
Confidence 46889999999999999998 899999999883
No 61
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=95.05 E-value=0.06 Score=51.67 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=48.0
Q ss_pred EEEEEEEccCCCEEecCCeEEEEec----cceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVET----dKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
+-+....++.||.|++||+|++|-. .....+|.||.+|+|.-. ...- .|..|+.|+.|..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~--~~~p-~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAI--RSAM-YVQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEE--ECSE-EECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEE--eCCC-eeCCCCEEEEEee
Confidence 3455688899999999999999954 567789999999999644 3453 7899999998743
No 62
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=95.00 E-value=0.024 Score=45.94 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=29.8
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
+.|.|+.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~-~V~~Gq~L~~ld 33 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGD-KVKKGQTLFIIE 33 (116)
T ss_dssp EEECCSSCEEEEEECSCTTS-EECTTCEEEEEE
T ss_pred eEEeCcCCEEEEEEECCCcC-EECCCCEEEEEC
Confidence 67899999999999999998 899999999983
No 63
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=94.44 E-value=0.024 Score=43.75 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=29.1
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|.||.+|+|.++++++|+ .|+.|++|+.+
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd-~V~~G~~l~~i 36 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGG-HVEAGSSYAEM 36 (84)
T ss_dssp TEECCSSSCCEEEESSCTTE-EECTTCEEEEE
T ss_pred ceEECCCCEEEEEEECCCCC-EECCCCEEEEE
Confidence 46899999999999999997 89999999988
No 64
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=94.00 E-value=0.05 Score=47.74 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=49.8
Q ss_pred ceEEEEEEEccCCCEEec----CCeEEEEeccceeEEEecCCCeEEEEE-------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------- 175 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~----Gd~L~eVETdKa~~ei~Ap~~G~I~ki------------------------------- 175 (356)
-.|+|+.+. +..|.|-. |+.++...++ ..+.||.+|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~ 94 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 94 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence 568888865 78888776 8999988877 47899999999988
Q ss_pred ----eecCCCeeeeCCCEEEEE
Q 018410 176 ----VKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 176 ----~v~eG~~~V~vG~~la~i 193 (356)
++++|| .|+.|++|+.+
T Consensus 95 gF~~~V~~Gd-~V~~G~~L~~~ 115 (161)
T 1f3z_A 95 GFKRIAEEGQ-RVKVGDTVIEF 115 (161)
T ss_dssp TEEECSCTTC-EECTTCEEEEE
T ss_pred ccEEEEeCcC-EECCCCEEEEE
Confidence 889998 89999999987
No 65
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=93.81 E-value=0.062 Score=49.40 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=37.6
Q ss_pred CCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 143 GDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 143 Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 5 ~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~-~V~kGq~L~~ld 54 (277)
T 2f1m_A 5 EPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQID 54 (277)
T ss_dssp -----CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTC-EECTTSCSEEEC
T ss_pred eccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCC-EecCCCEEEEEC
Confidence 3333333445677765 4678999999999999999998 899999999983
No 66
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=93.21 E-value=0.059 Score=46.91 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=49.3
Q ss_pred ceEEEEEEEccCCCEEec----CCeEEEEeccceeEEEecCCCeEEEEE-------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------- 175 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~----Gd~L~eVETdKa~~ei~Ap~~G~I~ki------------------------------- 175 (356)
-.|+|+.. -++.|.|-. |+.++...++ ..+.||.+|+|..+
T Consensus 14 ~~G~vv~l-~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~ 89 (154)
T 2gpr_A 14 CDGTIITL-DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN 89 (154)
T ss_dssp SSEEEECG-GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred CCeEEEEe-eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence 56888886 488888777 8999988886 48999999999974
Q ss_pred ----eecCCCeeeeCCCEEEEE
Q 018410 176 ----VKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 176 ----~v~eG~~~V~vG~~la~i 193 (356)
++++|| .|+.|++|+.+
T Consensus 90 gF~~~V~~Gd-~V~~G~~L~~~ 110 (154)
T 2gpr_A 90 GFESFVTQDQ-EVNAGDKLVTV 110 (154)
T ss_dssp SEEECCCTTC-EECTTCEEEEE
T ss_pred ceEEEEcCCC-EEcCCCEEEEE
Confidence 889998 89999999987
No 67
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=93.05 E-value=0.087 Score=47.55 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=26.1
Q ss_pred EEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEE
Q 018410 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLA 173 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ 173 (356)
..+|++|+.|++||.||+-. .|-+..+|+|.
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~ 52 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV 52 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence 67999999999999999755 67777777774
No 68
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=92.54 E-value=0.084 Score=41.90 Aligned_cols=33 Identities=15% Similarity=0.286 Sum_probs=29.6
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
...|.|+.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~ie 46 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGD-KVKAGDSLMVMI 46 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTE-EECSSCEEEEEE
T ss_pred ceEEecCCCEEEEEEECCCCC-EECCCCEEEEEE
Confidence 345789999999999999997 899999999983
No 69
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=92.43 E-value=0.072 Score=46.77 Aligned_cols=58 Identities=14% Similarity=0.223 Sum_probs=49.2
Q ss_pred ceEEEEEEEccCCCEEec----CCeEEEEeccceeEEEecCCCeEEEEE-------------------------------
Q 018410 131 QEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------- 175 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~----Gd~L~eVETdKa~~ei~Ap~~G~I~ki------------------------------- 175 (356)
-.|+|+.+ .+..|.|-. |+.++...++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 56899886 778888776 8889887774 47899999999988
Q ss_pred ----eecCCCeeeeCCCEEEEE
Q 018410 176 ----VKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 176 ----~v~eG~~~V~vG~~la~i 193 (356)
++++|| .|+.|++|+.+
T Consensus 95 gF~~~V~~Gd-~V~~G~~L~~~ 115 (162)
T 1ax3_A 95 GFTSFVSEGD-RVEPGQKLLEV 115 (162)
T ss_dssp TEEESCCCCS-EECSEEEEEEE
T ss_pred ccEEEEeCCC-EEcCCCEEEEE
Confidence 888998 89999999987
No 70
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=92.37 E-value=0.16 Score=48.27 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=38.6
Q ss_pred CeEEEEecc-ceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 150 EVLCEVETD-KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 150 d~L~eVETd-Ka~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
..-+.|+.+ .-.+.|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 45 ~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~-~V~kGq~L~~ld~ 90 (359)
T 3lnn_A 45 NLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGD-EVKAGDVLFTIDS 90 (359)
T ss_dssp EEEEEEECCSSSEEEECCSSCEEEEECCSCTTC-EECTTCEEEEEEC
T ss_pred EEEEEEEECCCcEEEEeccCCEEEEEEEcCCCC-EEcCCCEEEEECh
Confidence 444578875 66889999999999999999998 8999999999843
No 71
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=92.35 E-value=0.1 Score=39.36 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=29.1
Q ss_pred EEEecCCCeEEEEE-------eecCCCeeeeCCCEEEEEe
Q 018410 162 VEMECMEEGYLAKI-------VKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki-------~v~eG~~~V~vG~~la~i~ 194 (356)
..|.||..|+|.++ ++++|+ .|+.|++|+.+.
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~-~V~~G~~l~~ie 43 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQ-KVNVGDTLCIVE 43 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTC-EECTTCEEEEEE
T ss_pred eEEEcCCCeEEEEecccCcccccCCcC-EECCCCEEEEEE
Confidence 46899999999998 899998 899999999883
No 72
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=92.23 E-value=0.061 Score=42.37 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=29.4
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
...|.||.+|+|.++++++|+ .|+.|++|+.+
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~i 56 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGD-AVAEGQEICVI 56 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTC-CCCTTCCCEEE
T ss_pred ceEEECCCCEEEEEEECCCCC-EEcCCCEEEEE
Confidence 456889999999999999998 89999999988
No 73
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=92.06 E-value=0.14 Score=38.16 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=25.1
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEec
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
..|.|.++++++||.|..|++|+.|++
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 51 VRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp CCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred CCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 569999999999999999999999975
No 74
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=91.71 E-value=0.16 Score=47.97 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=36.1
Q ss_pred CeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 150 EVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 150 d~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
..-..|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 21 ~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~-~V~kG~~L~~ld 63 (341)
T 3fpp_A 21 LATGKLDAL-RKVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVID 63 (341)
T ss_dssp EEEEEEEES-SEEECCCSSCEEEEEECCCTTC-EECTTCEEEEEC
T ss_pred EEEEEEEee-EEEEEeccCCcEEEEEEeCCCC-EECCCCEEEEEC
Confidence 344566665 4678999999999999999998 899999999983
No 75
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=90.39 E-value=0.26 Score=48.28 Aligned_cols=49 Identities=18% Similarity=0.357 Sum_probs=36.2
Q ss_pred EEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEE---------------------------e--ecCCCeeeeC
Q 018410 136 ARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI---------------------------V--KGDGSKEIKV 186 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki---------------------------~--v~eG~~~V~v 186 (356)
...+|++||.|++||.||+-. .|-+..+|+|... . +++|+ .|.+
T Consensus 61 a~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~-~v~~ 133 (352)
T 2xhc_A 61 AKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGT-KVKQ 133 (352)
T ss_dssp CEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTC-EECT
T ss_pred CEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCC-EEcc
Confidence 378999999999999999944 4555555554321 2 77887 7999
Q ss_pred CCEEE
Q 018410 187 GEVIA 191 (356)
Q Consensus 187 G~~la 191 (356)
|++||
T Consensus 134 G~vla 138 (352)
T 2xhc_A 134 GLPLS 138 (352)
T ss_dssp TCBSB
T ss_pred CcEEe
Confidence 99886
No 76
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=90.37 E-value=0.23 Score=37.27 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=28.9
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
.+|.-| ..|.|.++++++||.|..|++|+.|+.+
T Consensus 45 ~~i~Ap------~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (79)
T 1ghj_A 45 MEVLAE------ADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp EEEECS------SCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred EEEEcC------CCEEEEEEEcCCcCEECCCCEEEEEecC
Confidence 466665 4699999999999999999999999753
No 77
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=90.29 E-value=0.33 Score=47.79 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=41.9
Q ss_pred ccCCCEEecCCeEEEEecc-ceeEEEecCCCeEEEEEee-cCCCeeeeCCCEEEEEe
Q 018410 140 KKEGDKVSPGEVLCEVETD-KATVEMECMEEGYLAKIVK-GDGSKEIKVGEVIAITV 194 (356)
Q Consensus 140 v~~Gd~V~~Gd~L~eVETd-Ka~~ei~Ap~~G~I~ki~v-~eG~~~V~vG~~la~i~ 194 (356)
++.|+.-..=...+.|+.| .-...|.++.+|+|.++++ ++|+ .|+.||+|+.+.
T Consensus 99 v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd-~VkkGq~L~~ld 154 (413)
T 3ne5_B 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLT 154 (413)
T ss_dssp CEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTC-EECTTCEEEEEE
T ss_pred EEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCC-EEcCCCEEEEEc
Confidence 3444444444555677754 4578899999999999998 9998 899999999984
No 78
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=89.51 E-value=0.22 Score=37.40 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=29.5
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
.+|.-| ..|.|.++++++||.|..|++|+.|+..
T Consensus 44 ~~i~Ap------~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 44 MEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp EEEEBS------SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred EEEeCC------CCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 467766 5699999999999999999999999864
No 79
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=89.38 E-value=0.26 Score=37.95 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=24.2
Q ss_pred CCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 167 MEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 167 p~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
+.+|+|.++++++|+ .|+.|++|+.+
T Consensus 17 ~~~G~v~~~~v~~Gd-~V~~G~~l~~i 42 (87)
T 3crk_C 17 MTMGTVQRWEKKVGE-KLSEGDLLAEI 42 (87)
T ss_dssp CCEEEEEEECSCTTC-EECTTCEEEEE
T ss_pred CCcEEEEEEEcCCCC-EEcCCCEEEEE
Confidence 468999999999998 89999999988
No 80
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=89.26 E-value=0.24 Score=47.72 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=35.2
Q ss_pred eEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 151 VLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 151 ~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
..+.|+.. -...|.++.+|+|.++++++|+ .|+.|++|+.|.
T Consensus 34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd-~V~kGq~L~~ld 75 (369)
T 1vf7_A 34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGS-DVKAGQQLYQID 75 (369)
T ss_dssp EEEECEES-CEEEECCSSCEEEEECCSCSSE-EECTTSEEEEEC
T ss_pred EEEEEEee-eEEEEEeeCceEEEEEEcCCCC-EEcCCCEEEEEC
Confidence 34466654 4578999999999999999997 899999999983
No 81
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=89.24 E-value=0.47 Score=41.78 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=40.1
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccceeEE-EecCCCeEEEEEe
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIV 176 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~e-i~Ap~~G~I~ki~ 176 (356)
.||..+-..+.+||.|.+||.|+-|.|-|-.+- +.||.+|+|.-+.
T Consensus 107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~ 153 (169)
T 3d4r_A 107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN 153 (169)
T ss_dssp ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence 456667788999999999999999999999776 8999999998554
No 82
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=88.98 E-value=0.32 Score=36.44 Aligned_cols=34 Identities=29% Similarity=0.476 Sum_probs=28.7
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
.+|.-| ..|.|.++++++||.|..|++|+.|+.+
T Consensus 42 ~~i~Ap------~~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 42 MEVPSP------KAGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEECS------SSSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred EEEECC------CCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 456665 4689999999999999999999998753
No 83
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=88.96 E-value=0.38 Score=37.74 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.6
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
..|.|.++++++||.|..|++|+.|+..
T Consensus 54 ~~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 54 YDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp SCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 5699999999999999999999999854
No 84
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=88.75 E-value=0.52 Score=42.09 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=35.6
Q ss_pred EEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCC
Q 018410 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG 180 (356)
..+|++||.|++||.||+. |..+..|-+..+|+|.=-..-+|
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G 104 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDG 104 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBT
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCC
Confidence 6799999999999999977 79999999999999974333334
No 85
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=88.41 E-value=0.28 Score=36.88 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=25.6
Q ss_pred ecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 165 ECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 165 ~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-++..|+|.++++++|+ .|+.|++|+.+
T Consensus 11 g~~~~G~i~~~~v~~Gd-~V~~G~~l~~i 38 (81)
T 1gjx_A 11 GGHENVDIIAVEVNVGD-TIAVDDTLITL 38 (81)
T ss_dssp SSCSSEEEEEECCCSSC-BCCSSCCCEEE
T ss_pred CCCCcEEEEEEEcCCCC-EECCCCEEEEE
Confidence 35789999999999998 89999999988
No 86
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=86.31 E-value=0.3 Score=44.04 Aligned_cols=45 Identities=29% Similarity=0.413 Sum_probs=34.4
Q ss_pred ccCCCEEecCCeEEEEeccceeEEEecCCCeEEE--------------------------EE--eecCCCeeeeCCCEEE
Q 018410 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLA--------------------------KI--VKGDGSKEIKVGEVIA 191 (356)
Q Consensus 140 v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~--------------------------ki--~v~eG~~~V~vG~~la 191 (356)
+++|+.|+.||+|+ -|.+ |-|..+|+|. .+ ++++|| .|+.|++|+
T Consensus 85 V~dG~~V~~GdvLA---Kd~A---IiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd-~V~~Ge~L~ 157 (193)
T 2xha_A 85 LRVGTKVKQGLPLS---KNEE---YICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGK-EVKQGEMLA 157 (193)
T ss_dssp CCTTCEECTTSBSS---TTSC---SBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTC-EECTTCEEE
T ss_pred cCCCCEEcCCCEEe---cCCe---EEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCC-EECCCCCcc
Confidence 68999999999998 3433 3467777664 13 788997 899999986
No 87
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=86.18 E-value=0.42 Score=38.70 Aligned_cols=26 Identities=35% Similarity=0.587 Sum_probs=24.0
Q ss_pred CCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 167 MEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 167 p~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..+|+|.++++++|+ .|+.|++|+.+
T Consensus 19 ~~~G~v~~~~v~~Gd-~V~~G~~L~~i 44 (108)
T 2dne_A 19 MQAGTIARWEKKEGD-KINEGDLIAEV 44 (108)
T ss_dssp CCEEEEEECSSCTTC-EECTTSEEEEE
T ss_pred cccEEEEEEEcCCCC-EecCCCEEEEE
Confidence 468999999999998 89999999988
No 88
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.03 E-value=0.4 Score=38.07 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=23.9
Q ss_pred CCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 167 MEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 167 p~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
...|+|.++++++|+ .|+.|++|+.+
T Consensus 19 ~~~G~i~~~~v~~Gd-~V~~G~~L~~i 44 (98)
T 2dnc_A 19 MEEGNIVKWLKKEGE-AVSAGDALCEI 44 (98)
T ss_dssp CSEECEEEESSCTTC-EECTTSEEEEE
T ss_pred CccEEEEEEEcCCCC-EeCCCCEEEEE
Confidence 358999999999998 89999999988
No 89
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=84.76 E-value=0.68 Score=38.84 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=25.4
Q ss_pred ceEEEEEEEccCCC-EEecCCeEEEEecc
Q 018410 131 QEGNIARWLKKEGD-KVSPGEVLCEVETD 158 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd-~V~~Gd~L~eVETd 158 (356)
..|+|.++++++|| .|..|++|++|+..
T Consensus 77 ~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~ 105 (128)
T 1y8o_B 77 EEGYLAKILVPEGTRDVPLGTPLCIIVEK 105 (128)
T ss_dssp SCEEEEEESSCTTCCSEETTCEEEEEESS
T ss_pred CCeEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 56999999999998 89999999999853
No 90
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=83.61 E-value=0.37 Score=36.85 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=29.1
Q ss_pred eEEecCCCCCCCceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 119 ~~i~~P~lg~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
.+|.-| ..|.|.++++++||.|..|++|+.|+.+
T Consensus 40 ~~i~Ap------~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 40 MEVPAP------FAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp EEEECS------SCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred EEEECC------CCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 567666 4588999999999999999999999864
No 91
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=83.42 E-value=0.22 Score=47.46 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=35.5
Q ss_pred CeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 150 EVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 150 d~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
..-+.|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 22 ~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~-~V~~Gq~L~~ld 64 (369)
T 4dk0_A 22 VATGSIESI-NTVDVGAQVSGKITKLYVKLGQ-QVKKGDLLAEID 64 (369)
T ss_dssp EEEEEEECS-SCCCBCCCSCSBCCEECCCTTS-CCCSSCCCEECC
T ss_pred EEeEEEEee-eeEEEecCCCcEEEEEEECCCC-EECCCCEEEEEc
Confidence 344566644 4567899999999999999998 899999999983
No 92
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=82.41 E-value=1.1 Score=47.20 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=29.7
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
...|.||..|+|.++++++|| .|+.||+|+++
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~i 643 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQ-EVQEGQALCTI 643 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTC-EECTTCEEEEE
T ss_pred CCeEECCCcEEEEEEEeCCCC-EEcCCCEEEEE
Confidence 456999999999999999998 89999999987
No 93
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=81.80 E-value=2.4 Score=37.78 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=15.3
Q ss_pred eecCCCeeeeCCCEEEEE
Q 018410 176 VKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 176 ~v~eG~~~V~vG~~la~i 193 (356)
++++|| .|+.||+|+.+
T Consensus 121 ~V~~Gd-~Vk~Gd~L~~f 137 (183)
T 3our_B 121 IAEEGQ-TVKAGDTVIEF 137 (183)
T ss_dssp CSCTTC-EECTTCEEEEE
T ss_pred EEeCcC-EEcCCCEEEEE
Confidence 889997 89999999887
No 94
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=79.73 E-value=1.3 Score=39.47 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.0
Q ss_pred EEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
|+--+++|++||+|++||+|+++.-++
T Consensus 115 G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 115 GEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CccceEEEeCcCEEcCCCEEEEECHHH
Confidence 445689999999999999999997644
No 95
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=79.27 E-value=0.31 Score=36.75 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=24.4
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEec
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
..|.|.++++++||.|..|++|+.|+.
T Consensus 52 ~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 52 ADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp SBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 568899999999999999999999874
No 96
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=77.70 E-value=1.9 Score=41.71 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=39.7
Q ss_pred EEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 138 WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 138 W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
-.++.|+.|++||+|+++- | .+|.+|.+|++. ... .- .|..|+.++.+..
T Consensus 279 ~~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i--~~p-~p-~V~~G~~~~~i~~ 328 (350)
T 2bco_A 279 DNVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAI--VFP-NR-HVAIGQRAALMVC 328 (350)
T ss_dssp TTCCBTEECCTTCEEEEET-T---EEEECSSSSCEE--ESC-CT-TCCTTSEEEEEEE
T ss_pred ccccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEE--Eec-CC-CCCCCcEEEEEEE
Confidence 3468899999999999994 4 688999999975 233 43 6999999887754
No 97
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=77.01 E-value=1.9 Score=48.88 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=29.0
Q ss_pred EEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEE
Q 018410 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLA 173 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ 173 (356)
..+|++||.|++||.||+. |-.+..|-+..+|+|.
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 5789999999999999987 5667777777777764
No 98
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=76.71 E-value=2 Score=48.02 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=29.3
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|.||..|+|.++++++|| .|+.||+|+++
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd-~V~~G~~l~~i 1108 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGE-TVKANQPLLIT 1108 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTC-EECTTCEEEEE
T ss_pred ceeecCceEEEEEEEeCCCC-EECCCCEEEEE
Confidence 47999999999999999998 89999999988
No 99
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=75.89 E-value=1.7 Score=37.58 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=27.4
Q ss_pred eEEecCCCCCC--CceEEEEEEEccCCCEEecCCeEEEEecc
Q 018410 119 QEIGMPSLSPT--MQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 119 ~~i~~P~lg~s--~~eg~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
.+|.+ .+|-. .-+|+=-+.+|++||+|++||+|+++.-+
T Consensus 73 ~evLi-HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 113 (154)
T 2gpr_A 73 VEILL-HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLK 113 (154)
T ss_dssp CEEEE-ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHH
T ss_pred CEEEE-EECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHH
Confidence 35544 44432 23345567899999999999999999753
No 100
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=75.49 E-value=2.3 Score=48.01 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=29.7
Q ss_pred eEEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 161 ~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
...|.||..|+|.++++++|| .|+.||+|+++
T Consensus 1167 ~~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~i 1198 (1236)
T 3va7_A 1167 AELLYSEYTGRFWKPVAAVGD-HVEAGDGVIII 1198 (1236)
T ss_dssp CEEEECSSCEEEEEESSCTTC-EECSSCEEEEE
T ss_pred CcEEeCCCcEEEEEEEcCCCC-EECCCCEEEEE
Confidence 356999999999999999998 89999999988
No 101
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=73.73 E-value=1.8 Score=46.13 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=29.2
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|.||..|+|.++++++|+ .|+.||+|+++
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd-~V~~Gq~L~~i 680 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGA-KVAKGQPLCVL 680 (718)
T ss_dssp SCEECSSCEEEEEECSCTTC-CBCTTCCCEEE
T ss_pred ceEeCCCCeEEEEEEeCCCC-eeCCCCEEEEE
Confidence 46999999999999999998 89999999988
No 102
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=70.34 E-value=1.1 Score=43.78 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=30.2
Q ss_pred ccCCCEEecCCeEE-------------EEeccceeEEEecCCCeEEEE----------EeecCCCeeeeCCCEEE
Q 018410 140 KKEGDKVSPGEVLC-------------EVETDKATVEMECMEEGYLAK----------IVKGDGSKEIKVGEVIA 191 (356)
Q Consensus 140 v~~Gd~V~~Gd~L~-------------eVETdKa~~ei~Ap~~G~I~k----------i~v~eG~~~V~vG~~la 191 (356)
+++|+.|+.||+|+ ..--+|=.+-|. |.+|...+ +++++|| .|+.|++|+
T Consensus 125 v~~g~~v~~G~vlak~~aiiaeidG~V~fg~~kr~i~i~-~~~g~~~eylip~~~~k~~~v~~Gd-~V~~G~~l~ 197 (352)
T 2xhc_A 125 LRVGTKVKQGLPLSKNEEYICELDGKIVEIERMKKVVVQ-TPDGEQDVYYIPLDVFDRDRIKKGK-EVKQGEMLA 197 (352)
T ss_dssp CCTTCEECTTCBSBSSSSCBCCSCEEEEEEEEEEEEEEE-CTTSCEEEEEEEGGGCCTTTSCTTC-EECTTCEEE
T ss_pred cCCCCEEccCcEEecCceEEeccceEEEECCcEEEEEEE-CCCCCEEEEEEcCCCCcCeeeCCCC-EEeCCCCcc
Confidence 78999999999887 111112233333 34443322 2467786 788888885
No 103
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=70.10 E-value=3.1 Score=46.58 Aligned_cols=31 Identities=13% Similarity=0.382 Sum_probs=26.4
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..|.||..|+|.++++++|| .|+.||+|+++
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd-~V~~G~~l~~i 1126 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQ-AVNAGDVLVSI 1126 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCC-CC---CEEEEE
T ss_pred ceeeCCCCeEEEEEEcCCcC-EeCCCCEEEEE
Confidence 56999999999999999998 89999999988
No 104
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=68.09 E-value=1.1 Score=47.27 Aligned_cols=31 Identities=10% Similarity=0.327 Sum_probs=0.0
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
-.|.||..|+|.++++++|| .|+.||+|+++
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~i 633 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQ-TVEAGATLVVL 633 (675)
T ss_dssp --------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCC-EEcCCCEEEEE
Confidence 45899999999999999998 89999999987
No 105
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=66.20 E-value=1.2 Score=44.40 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=0.0
Q ss_pred ceEEEEEEEccCCCEEecCCeEEEEeccce
Q 018410 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (356)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa 160 (356)
.+|+|.++++++||.|..|++|+.|+.+..
T Consensus 52 ~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 52 VKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp ------------------------------
T ss_pred CCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 679999999999999999999999987543
No 106
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=63.15 E-value=5 Score=37.91 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++|+-
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 73 VLDRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEecCCcEEEEEEE
Confidence 6899999999999999999986
No 107
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=62.95 E-value=9.9 Score=38.04 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=35.0
Q ss_pred EeccceeEEEecCCCeEEEEE-------------------------------eecCCCeeeeCCCEEEEEecc
Q 018410 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 155 VETdKa~~ei~Ap~~G~I~ki-------------------------------~v~eG~~~V~vG~~la~i~~~ 196 (356)
+-..+...+|.|+.+|+|..| +++.|| .|..|++|+.|..+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~-~v~~g~~l~~i~~~ 400 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGD-RVQKGEALATIHSN 400 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTC-EECTTCEEEEEEES
T ss_pred CCCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCC-EECCCCeEEEEEcC
Confidence 455788999999999999877 778897 89999999998654
No 108
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=61.31 E-value=6.7 Score=38.13 Aligned_cols=34 Identities=9% Similarity=0.141 Sum_probs=29.7
Q ss_pred eeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 160 a~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
...-|.||.+|.+. ..++.|+ .|+.||+|+.|.+
T Consensus 289 ~~~~v~A~~~Gl~~-~~v~lGd-~V~kG~~la~I~d 322 (368)
T 3fmc_A 289 NYRKFHAPKAGMVE-YLGKVGV-PMKATDPLVNLLR 322 (368)
T ss_dssp GEEEEECSSCEEEE-ECSCTTC-CBCTTCEEEEEEC
T ss_pred CcEEEecCCCEEEE-EeCCCCC-EeCCCCEEEEEEc
Confidence 34458999999998 7899997 8999999999976
No 109
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=61.26 E-value=4.5 Score=38.30 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++||.|++||+|++|+-
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEE
Confidence 5899999999999999999986
No 110
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=61.22 E-value=4.8 Score=38.05 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++||.|++||+|++|+-
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEEE
Confidence 5899999999999999999986
No 111
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=61.12 E-value=10 Score=37.85 Aligned_cols=41 Identities=17% Similarity=0.379 Sum_probs=34.2
Q ss_pred EeccceeEEEecCCCeEEEEE-------------------------------eecCCCeeeeCCCEEEEEeccC
Q 018410 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEE 197 (356)
Q Consensus 155 VETdKa~~ei~Ap~~G~I~ki-------------------------------~v~eG~~~V~vG~~la~i~~~~ 197 (356)
+-..+ ..+|.|+.+|+|..| +++.|| .|..|++|+.|..+.
T Consensus 322 ~~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~-~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 322 LPLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGD-RVERGEALALVYHRR 393 (423)
T ss_dssp SCCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTC-EECTTSEEEEEEECS
T ss_pred CCCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCC-EeCCCCeEEEEEeCC
Confidence 44577 899999999999877 778897 899999999986543
No 112
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=60.30 E-value=5.1 Score=38.03 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=20.7
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++|+-
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 4899999999999999999986
No 113
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=60.24 E-value=6 Score=36.89 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|.+++|+.|.+||+|++|+-
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEEe
Confidence 4899999999999999999986
No 114
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=59.65 E-value=5.6 Score=38.05 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=20.7
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|++||+|++|+-
T Consensus 86 v~~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 86 YEIHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp EEECCCTTCEECSSCEEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEEE
Confidence 5999999999999999999986
No 115
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=59.13 E-value=4.4 Score=35.29 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=21.8
Q ss_pred EEEEEEEccCCCEEecCCeEEEEecc
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
|+=.+.+|++||+|++||+|+++.-+
T Consensus 93 G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 93 GEGFKRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp TTTEEECSCTTCEECTTCEEEEECHH
T ss_pred CCccEEEEeCcCEECCCCEEEEECHH
Confidence 44467899999999999999999753
No 116
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=58.92 E-value=12 Score=37.49 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=33.3
Q ss_pred eccceeEEEecCCCeEEEEE-------------------------------eecCCCeeeeCCCEEEEEe
Q 018410 156 ETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 156 ETdKa~~ei~Ap~~G~I~ki-------------------------------~v~eG~~~V~vG~~la~i~ 194 (356)
...+...+|.|+.+|+|..| +++.|| .|..|++|+.|.
T Consensus 333 ~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~-~V~~g~~l~~i~ 401 (436)
T 3h5q_A 333 PQAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGD-KVEEGESLLTIH 401 (436)
T ss_dssp CCCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTC-EECTTSEEEEEE
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcC-EeCCCCeEEEEe
Confidence 34578899999999999988 677897 899999999997
No 117
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=58.41 E-value=2.1 Score=39.28 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=0.0
Q ss_pred CCCeEEEEEeecCCCeeeeCCCEEEEE
Q 018410 167 MEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (356)
Q Consensus 167 p~~G~I~ki~v~eG~~~V~vG~~la~i 193 (356)
..+|+|.++++++|| .|..|++|+.+
T Consensus 15 m~eG~I~~w~vk~Gd-~V~~Gd~L~~i 40 (229)
T 1zy8_K 15 MEEGNIVKWLKKEGE-AVSAGDALCEI 40 (229)
T ss_dssp ---------------------------
T ss_pred CCcEEEEEEecCCCC-EeCCCCEEEEE
Confidence 468999999999998 89999999987
No 118
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=57.93 E-value=5.9 Score=37.79 Aligned_cols=22 Identities=32% Similarity=0.835 Sum_probs=20.6
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|.+||+|++|+-
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEe
Confidence 5899999999999999999986
No 119
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=57.11 E-value=6.2 Score=38.04 Aligned_cols=22 Identities=27% Similarity=0.830 Sum_probs=20.8
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|++++|+.|.+||+|++|+-
T Consensus 110 v~~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 110 IEWHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp EEESSCTTCEECTTCEEEEEEE
T ss_pred EEEEeCCCCEecCCCEEEEEEe
Confidence 5899999999999999999986
No 120
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=56.63 E-value=6.4 Score=37.34 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|.+++|+.|.+||+|++|+-
T Consensus 87 v~~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 87 LTWHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp EEESCCTTCEECTTCEEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEE
Confidence 5999999999999999999986
No 121
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=56.04 E-value=9.8 Score=36.31 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=29.1
Q ss_pred ceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 159 Ka~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
..+.-|.||.+|.+. ..++.|+ .|+.||+|+.|.+
T Consensus 255 ~~~~~v~A~~~Gl~~-~~v~~Gd-~V~~G~~la~I~d 289 (331)
T 3na6_A 255 DGDCYLFSEHDGLFE-IMIDLGE-PVQEGDLVARVWS 289 (331)
T ss_dssp CSCCCEECSSCEEEE-ESSCTTC-EECTTCEEEEEEC
T ss_pred CCcEEEeCCCCeEEE-EcCCCCC-EEcCCCEEEEEEc
Confidence 334567999999887 5789997 8999999999865
No 122
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=53.74 E-value=4.3 Score=35.36 Aligned_cols=28 Identities=39% Similarity=0.589 Sum_probs=23.0
Q ss_pred eEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 132 eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
.|+=.+.+|++||+|++||+|+++.-++
T Consensus 92 ~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 92 KGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp TTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred CCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 3455688999999999999999987544
No 123
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=52.57 E-value=7.2 Score=36.96 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=20.6
Q ss_pred EEEEccCCCEEecCCeEEEEec
Q 018410 136 ARWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++|.+++|+.|.+||+|++|+-
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEEE
Confidence 4899999999999999999986
No 124
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=52.03 E-value=9.9 Score=38.10 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=35.1
Q ss_pred EeccceeEEEecCCCeEEEEE-------------------------------eecCCCeeeeCCCEEEEEecc
Q 018410 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 155 VETdKa~~ei~Ap~~G~I~ki-------------------------------~v~eG~~~V~vG~~la~i~~~ 196 (356)
+-..+...+|.|+.+|+|..| +++.|| .|..|++|+.|...
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~-~v~~g~~l~~i~~~ 405 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGD-QVDGQRPLAVIHAK 405 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTC-EEBTTBCSEEEEES
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCC-EECCCCeEEEEecC
Confidence 455788999999999999887 778897 89999999998654
No 125
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=49.48 E-value=8.9 Score=38.44 Aligned_cols=30 Identities=30% Similarity=0.343 Sum_probs=23.9
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
++-+-=+.++++.||.|++||+|++|=.++
T Consensus 375 id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~ 404 (436)
T 3h5q_A 375 IDLAVGIVLNKKIGDKVEEGESLLTIHSNR 404 (436)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEEESS
T ss_pred CCCCCceEEecCCcCEeCCCCeEEEEeCCh
Confidence 344555799999999999999999986333
No 126
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=47.10 E-value=27 Score=35.37 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=33.9
Q ss_pred EeccceeEEEecCCCeEEEE-----------------------------EeecCCCeeeeCCCEEEEEecc
Q 018410 155 VETDKATVEMECMEEGYLAK-----------------------------IVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 155 VETdKa~~ei~Ap~~G~I~k-----------------------------i~v~eG~~~V~vG~~la~i~~~ 196 (356)
+-..+...+|.|+.+|+|.. ++++.|| .|..|++|+.|...
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~-~V~~g~~l~~i~~~ 435 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQ-RLRRGTPWLRVHRD 435 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTC-EECTTCEEEEEEES
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCC-EECCCCeEEEEEcC
Confidence 45578889999999999954 4778897 89999999998654
No 127
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=46.26 E-value=8.2 Score=33.96 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=12.9
Q ss_pred EEEccCCCEEecCCeEEEEe
Q 018410 137 RWLKKEGDKVSPGEVLCEVE 156 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVE 156 (356)
++.|++||.|++||+|..+-
T Consensus 84 ~i~V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 84 QIQVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp SCCCCTTCEECTTCEEEEEC
T ss_pred ccccCCCCEEcCCCEEEeec
Confidence 34566677777777666664
No 128
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=46.17 E-value=12 Score=37.44 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=24.3
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
++-+-=+.++++.||.|++||+|+.|=++.
T Consensus 372 ~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 372 IDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 344444799999999999999999987653
No 129
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=46.11 E-value=12 Score=37.33 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=24.1
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
++-+-=+.++++.||.|++||+|+.|=++.
T Consensus 364 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 364 IDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 333444789999999999999999986653
No 130
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=43.52 E-value=14 Score=37.34 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.2
Q ss_pred EEEEEEEccCCCEEecCCeEEEEecc
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
+.=+.++++.||.|++||+|+.|=++
T Consensus 410 ~~Gi~l~~k~G~~V~~g~~l~~i~~~ 435 (474)
T 1uou_A 410 GVGAELLVDVGQRLRRGTPWLRVHRD 435 (474)
T ss_dssp SCEEEECSCTTCEECTTCEEEEEEES
T ss_pred CCceEEEccCCCEECCCCeEEEEEcC
Confidence 34478999999999999999998654
No 131
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=41.18 E-value=28 Score=33.32 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=28.5
Q ss_pred ceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 159 Ka~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
+...-+.|+..|.+. ..++.|+ .|+.|++|+.+.+
T Consensus 265 ~~~~~v~A~~~G~~~-~~~~~g~-~V~~G~~La~i~d 299 (354)
T 3cdx_A 265 EADAYVMAPRTGLFE-PTHYVGE-EVRTGETAGWIHF 299 (354)
T ss_dssp CGGGEEECSSCEEEE-ESCCTTC-EECTTSEEEEEEC
T ss_pred CCcEEEECCCCEEEE-EeCCCCC-EeCCCCEEEEEEC
Confidence 445568899999765 6678997 8999999999865
No 132
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=41.16 E-value=32 Score=35.84 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=39.6
Q ss_pred EccCCCEEecCCeEEEEeccc-eeEEE--ecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 139 LKKEGDKVSPGEVLCEVETDK-ATVEM--ECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 139 ~v~~Gd~V~~Gd~L~eVETdK-a~~ei--~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.+++||.|..||++++|.-.. ....| +....|+|..| .+|+ ..+-++|+.+.
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~--~~v~~~v~~i~ 184 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGS--FTIDDPICVIE 184 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEE--ECTTSCCEEEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCc--ceeceeEEEEe
Confidence 379999999999999985433 33444 45578999987 6773 88889998773
No 133
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=39.20 E-value=14 Score=34.10 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEEEEEEccCCCEEecCCeEEEEecc
Q 018410 133 GNIARWLKKEGDKVSPGEVLCEVETD 158 (356)
Q Consensus 133 g~I~~W~v~~Gd~V~~Gd~L~eVETd 158 (356)
+-+.++.|++||.|++||+|+.+-..
T Consensus 130 ~HL~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 130 QSLSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EEESEESCCTTCEECTTCEEEECBCC
T ss_pred ecCCccccCCCCEECCCCEEEEeCCc
Confidence 34456788999999999999988653
No 134
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=39.17 E-value=34 Score=29.90 Aligned_cols=62 Identities=6% Similarity=0.046 Sum_probs=38.8
Q ss_pred eEEecCC--CC------CCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEE
Q 018410 119 QEIGMPS--LS------PTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (356)
Q Consensus 119 ~~i~~P~--lg------~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~l 190 (356)
++|..|. ++ -.+.+|+|+..- |- .++|+-+.-...+.+- |.++.+++|+ .|+.||+|
T Consensus 35 iDi~~~~G~~g~~gtpV~A~~~G~V~~~~---------G~-~V~I~H~~g~~t~Y~H----L~~i~V~~G~-~V~~Gq~I 99 (182)
T 3it5_A 35 FDASYDWPRWGSATYSVVAAHAGTVRVLS---------RC-QVRVTHPSGWATNYYH----MDQIQVSNGQ-QVSADTKL 99 (182)
T ss_dssp EEEESSCCCTTSCCCEEECSSSEEEEEEE---------TT-EEEEECTTSEEEEEES----EESCCCCTTC-EECTTCEE
T ss_pred EEecCCCCCCCCCCCEEEeccCEEEEEEC---------Ce-EEEEEECCcEEEEEEc----CCccccCCCC-EEcCCCEE
Confidence 6777772 11 135778887643 32 4455554433333333 3467899998 89999999
Q ss_pred EEEec
Q 018410 191 AITVE 195 (356)
Q Consensus 191 a~i~~ 195 (356)
+.+..
T Consensus 100 G~vG~ 104 (182)
T 3it5_A 100 GVYAG 104 (182)
T ss_dssp EEECS
T ss_pred EeecC
Confidence 98854
No 135
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=38.93 E-value=14 Score=34.86 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.4
Q ss_pred EEEEccCCCEEecC------CeEEEEec
Q 018410 136 ARWLKKEGDKVSPG------EVLCEVET 157 (356)
Q Consensus 136 ~~W~v~~Gd~V~~G------d~L~eVET 157 (356)
++|.+++|+.|.+| |+|++|+-
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~G 96 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKITG 96 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEEE
Confidence 48999999999999 99999986
No 136
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=37.62 E-value=12 Score=37.41 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=24.2
Q ss_pred CceEEEEEEEccCCCEEecCCeEEEEeccc
Q 018410 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (356)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdK 159 (356)
++-+.=+.++++.||.|++||+|+.|=++.
T Consensus 377 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 377 IDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 444444789999999999999999996643
No 137
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=37.32 E-value=16 Score=34.33 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=16.2
Q ss_pred EeecCCCeeeeCCCEEEEEecc
Q 018410 175 IVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 175 i~v~eG~~~V~vG~~la~i~~~ 196 (356)
+.+++|+ .|+.||+|+.+...
T Consensus 232 i~V~~G~-~V~~Gq~IG~vG~t 252 (282)
T 2hsi_A 232 IDVKLGQ-QVPRGGVLGKVGAT 252 (282)
T ss_dssp ECSCTTC-EECTTCEEEECCCT
T ss_pred cccCCcC-EECCCCEEEEECCC
Confidence 4677887 78888888887554
No 138
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=36.47 E-value=17 Score=34.53 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=15.5
Q ss_pred EeecCCCeeeeCCCEEEEEecc
Q 018410 175 IVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 175 i~v~eG~~~V~vG~~la~i~~~ 196 (356)
+.|++|+ .|+.||+|+.+...
T Consensus 239 i~Vk~Gq-~V~~GqvIG~vG~T 259 (291)
T 1qwy_A 239 LTVSAGD-KVKAGDQIAYSGST 259 (291)
T ss_dssp ECCCTTC-EECTTCEEEECCCC
T ss_pred cccCCcC-EECCCCEEEEECCC
Confidence 4677886 78888888877543
No 139
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=32.43 E-value=21 Score=32.96 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=10.5
Q ss_pred eecCCCeeeeCCCEEEEEec
Q 018410 176 VKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 176 ~v~eG~~~V~vG~~la~i~~ 195 (356)
.|+.|+ .|+.||+|+.+..
T Consensus 183 ~V~~G~-~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 183 ELEKGD-PVKAGDLLGYMGD 201 (252)
T ss_dssp SCCTTC-EECTTCEEEECBC
T ss_pred cCCCCC-EECCCCEEEEECC
Confidence 445564 5666666665543
No 140
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=31.34 E-value=41 Score=30.94 Aligned_cols=68 Identities=16% Similarity=0.199 Sum_probs=41.2
Q ss_pred eEEecCCCC----CCCceEEEEEEEccCCCEEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 119 QEIGMPSLS----PTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 119 ~~i~~P~lg----~s~~eg~I~~W~v~~Gd~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
++|..|.=. -.+..|+|+.+--..| -| -.+.|+-..-...+. +-|.++.|..|+ .|..|++|+.+.
T Consensus 84 IDi~a~~Gt~~pV~A~~~G~V~~~g~~~~----~G-~~ViI~Hg~G~~t~Y----~HL~~i~Vk~Gd-~V~~Gq~IG~vG 153 (245)
T 3tuf_B 84 IDLAEKDGKDFDVSASLSGTVVKAEKDPV----LG-YVVEVEHADGLSTVY----QSLSEVSVEQGD-KVKQNQVIGKSG 153 (245)
T ss_dssp EEEEETTCCCCEEECSSCEEEEEEEEETT----TE-EEEEEECSTTEEEEE----EEESEESCCTTC-EECTTCEEEECB
T ss_pred EEEeCCCCCcceEEeCcCeEEEEEEecCC----Cc-eEEEEEeCCCEEEEE----ecCCccccCCCC-EECCCCEEEEeC
Confidence 577776322 1357788876654433 22 234455443333333 334568899998 899999999986
Q ss_pred cc
Q 018410 195 EE 196 (356)
Q Consensus 195 ~~ 196 (356)
..
T Consensus 154 ~t 155 (245)
T 3tuf_B 154 KN 155 (245)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 141
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=29.03 E-value=35 Score=29.45 Aligned_cols=32 Identities=9% Similarity=0.336 Sum_probs=25.5
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~ 292 (356)
+.|.+++.++++|||++.-.. -.|+.+|+..|
T Consensus 68 ~d~~a~~~l~~~Gid~s~h~a----r~l~~~d~~~~ 99 (173)
T 4etm_A 68 PHEGTQEILRREGISFDGMLA----RQVSEQDLDDF 99 (173)
T ss_dssp CCHHHHHHHHHTTCCCTTCCC----CBCCHHHHHHC
T ss_pred CCHHHHHHHHHCCccccCCcc----ccCCHhhcCCC
Confidence 479999999999999986443 26888888765
No 142
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=28.66 E-value=27 Score=33.61 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=16.6
Q ss_pred EeecCCCeeeeCCCEEEEEecc
Q 018410 175 IVKGDGSKEIKVGEVIAITVEE 196 (356)
Q Consensus 175 i~v~eG~~~V~vG~~la~i~~~ 196 (356)
+.++.|+ .|+.||+|+.+...
T Consensus 284 ~~v~~G~-~V~~G~~Ig~~G~t 304 (361)
T 2gu1_A 284 ILVKKGQ-LVKRGQKIALAGAT 304 (361)
T ss_dssp ECCCTTC-EECTTCEEEECCCC
T ss_pred cccCCcC-EECCCCEEEEECCC
Confidence 4678897 89999999987554
No 143
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=27.77 E-value=55 Score=30.80 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=27.3
Q ss_pred EEEecCCCeEEEEEeecCCCeeeeCCCEEEEEec
Q 018410 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (356)
Q Consensus 162 ~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~ 195 (356)
.-+.|+..|.+. -.++.|+ .|+.|++|+.+.+
T Consensus 258 ~~~~a~~~G~~~-~~~~~g~-~V~~G~~la~i~d 289 (332)
T 2qj8_A 258 DQLKSPSPGIFE-PRCSVMD-EVEQGDVVGVLHP 289 (332)
T ss_dssp GEEECSSSEEEE-ECSCTTC-EECTTCEEEEEEC
T ss_pred eEEeCCCCeEEE-EeCCCCC-EeCCCCEEEEEEC
Confidence 357899999887 6778897 8999999999865
No 144
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=27.59 E-value=40 Score=28.00 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=22.3
Q ss_pred cCCCeEEEEEee-cCCCeeeeCCCEEEEE
Q 018410 166 CMEEGYLAKIVK-GDGSKEIKVGEVIAIT 193 (356)
Q Consensus 166 Ap~~G~I~ki~v-~eG~~~V~vG~~la~i 193 (356)
.+.-|.|..+.+ +.|+ .|+.|++|+.+
T Consensus 32 ~~~lG~i~~v~lp~~G~-~V~~g~~l~~v 59 (131)
T 1hpc_A 32 QDHLGEVVFVELPEPGV-SVTKGKGFGAV 59 (131)
T ss_dssp HHHHCSEEEEECCCTTC-EECBTSEEEEE
T ss_pred cccCCCceEEEecCCCC-EEeCCCEEEEE
Confidence 466677877777 8897 89999999988
No 145
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=27.31 E-value=66 Score=26.87 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=22.2
Q ss_pred ecCCCeEEEEEee-cCCCeeeeCCCEEEEE
Q 018410 165 ECMEEGYLAKIVK-GDGSKEIKVGEVIAIT 193 (356)
Q Consensus 165 ~Ap~~G~I~ki~v-~eG~~~V~vG~~la~i 193 (356)
.+|.-|.|..+.+ +.|+ .|+.|++|+++
T Consensus 40 a~~~lG~i~~V~lp~vGd-~V~~Gd~l~~V 68 (136)
T 1zko_A 40 AQEQLGDVVYVDLPEVGR-EVKKGEVVASI 68 (136)
T ss_dssp HHHHHCSEEEEECCCTTC-EECTTCEEEEE
T ss_pred hcccCCCcEEEEecCCCC-EEeCCCEEEEE
Confidence 3466676776666 8997 89999999988
No 146
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=26.79 E-value=57 Score=31.27 Aligned_cols=11 Identities=9% Similarity=0.126 Sum_probs=5.2
Q ss_pred EecCCCeEEEE
Q 018410 164 MECMEEGYLAK 174 (356)
Q Consensus 164 i~Ap~~G~I~k 174 (356)
|.|+.+|+|..
T Consensus 245 V~A~~~G~V~~ 255 (361)
T 2gu1_A 245 VYSTGDGKVIV 255 (361)
T ss_dssp EECSSSEEEEE
T ss_pred EEEeeCEEEEE
Confidence 44445554443
No 147
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=26.69 E-value=23 Score=33.85 Aligned_cols=21 Identities=14% Similarity=0.223 Sum_probs=17.4
Q ss_pred EEEccCCCEEecCCeEEEEec
Q 018410 137 RWLKKEGDKVSPGEVLCEVET 157 (356)
Q Consensus 137 ~W~v~~Gd~V~~Gd~L~eVET 157 (356)
++.|++||.|++||+|+.+-+
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 456899999999999998753
No 148
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=26.32 E-value=44 Score=27.25 Aligned_cols=32 Identities=19% Similarity=0.253 Sum_probs=24.7
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~ 292 (356)
+.|.+.+.++++|||++.-. --.|+..|+..|
T Consensus 44 ~~p~a~~~l~~~Gid~s~~~----ar~l~~~~~~~~ 75 (131)
T 1jf8_A 44 VNPKAIEAMKEVDIDISNHT----SDLIDNDILKQS 75 (131)
T ss_dssp CCHHHHHHHHHTTCCCTTCC----CCBCCHHHHHHC
T ss_pred CCHHHHHHHHHcCCCcccCc----cccCChHHhccC
Confidence 57999999999999997543 236778877653
No 149
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=25.81 E-value=9.8 Score=29.63 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=13.5
Q ss_pred EccCCCEEecCCeEE
Q 018410 139 LKKEGDKVSPGEVLC 153 (356)
Q Consensus 139 ~v~~Gd~V~~Gd~L~ 153 (356)
+|++||.|++||.|.
T Consensus 68 ~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 68 NVFEGERVERGDVIS 82 (84)
T ss_dssp SSCTTEEECBSCSSB
T ss_pred EeCCCCEECCCCCcc
Confidence 689999999999875
No 150
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=24.71 E-value=1.1e+02 Score=31.68 Aligned_cols=53 Identities=32% Similarity=0.401 Sum_probs=39.2
Q ss_pred EccCCCEEecCCeEEEEe-ccceeEEE--ecCCCeEEEEEeecCCCeeeeCCCEEEEEe
Q 018410 139 LKKEGDKVSPGEVLCEVE-TDKATVEM--ECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (356)
Q Consensus 139 ~v~~Gd~V~~Gd~L~eVE-TdKa~~ei--~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~ 194 (356)
.+++||.|..||++.+|. +.-....| +....|+|..| +.+| ...+-++|+.+.
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i-~~~g--~~~v~~~i~~i~ 178 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI-AEEG--DYTIEEVIAKVK 178 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE-CCSE--EECTTSEEEEEE
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe-ccCC--cccccceEEEEe
Confidence 479999999999999875 33334443 55578999865 3567 378889998773
No 151
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=24.65 E-value=18 Score=41.07 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=18.5
Q ss_pred EEccCCCEEecCCeEEEE--eccce
Q 018410 138 WLKKEGDKVSPGEVLCEV--ETDKA 160 (356)
Q Consensus 138 W~v~~Gd~V~~Gd~L~eV--ETdKa 160 (356)
..|++||.|+.||+|+.| |+.|+
T Consensus 1107 ~~v~~g~~v~~g~vlakip~~~~k~ 1131 (1407)
T 3lu0_D 1107 VQLEDGVQISSGDTLARIPQESGGT 1131 (1407)
T ss_dssp CCCCSSCEECTTCEEECCCCCCCCS
T ss_pred EEecCCCEeccCceEEecchhhccc
Confidence 468899999999999977 55444
No 152
>3rh0_A Arsenate reductase; oxidoreductase; 1.72A {Corynebacterium glutamicum}
Probab=23.68 E-value=51 Score=27.73 Aligned_cols=32 Identities=9% Similarity=-0.057 Sum_probs=25.3
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~ 292 (356)
+.|.+.+.++++|||++.-.. -.|+.+|+..|
T Consensus 62 ~dp~a~~vl~e~Gidis~h~a----r~l~~~~~~~~ 93 (148)
T 3rh0_A 62 LNQLSVESIAEVGADMSQGIP----KAIDPELLRTV 93 (148)
T ss_dssp CCHHHHHHHHHTTCCCTTCCC----CBCCHHHHHHC
T ss_pred CCHHHHHHHHHcCCCcCCCee----eECCHHHhcCC
Confidence 589999999999999976433 36888887754
No 153
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=23.36 E-value=97 Score=27.07 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=31.0
Q ss_pred EEecCCeEEEEeccceeEEEecCCCeEEEEEeecCCCeeeeCCCEEEEEeccCCc
Q 018410 145 KVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEED 199 (356)
Q Consensus 145 ~V~~Gd~L~eVETdKa~~ei~Ap~~G~I~ki~v~eG~~~V~vG~~la~i~~~~~~ 199 (356)
.+++|+-||.++. +|+-.-+.+.+|+ .|..|+.||.+..-.++
T Consensus 95 ~lkkGt~L~lvpa-----------eG~~V~~i~~~G~-rV~kgd~lA~i~T~KGE 137 (169)
T 3d4r_A 95 YLKAGTKLISVPA-----------EGYKVYPIMDFGF-RVLKGYRLATLESKKGD 137 (169)
T ss_dssp EECTTCBCEEEEE-----------CSSEEEECCCCSE-EECTTCEEEEEECTTCC
T ss_pred EEcCCCEEEEEEe-----------CceEEEEEcCcCc-EeccCCeEEEEEecCce
Confidence 3556677777764 4555567889997 89999999988554433
No 154
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12}
Probab=22.84 E-value=55 Score=28.05 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=24.6
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~ 292 (356)
+.|.+.+.++++|||++.... -.|+.+|+..|
T Consensus 65 ~~p~a~~vl~e~Gid~s~~~s----r~l~~~~~~~~ 96 (167)
T 2fek_A 65 ADPTAISVAAEHQLSLEGHCA----RQISRRLCRNY 96 (167)
T ss_dssp CCHHHHHHHHHTTCCCTTCCC----CBCCHHHHHHS
T ss_pred CCHHHHHHHHHcCCCccCCcC----ccCCHHHhccC
Confidence 579999999999999975443 36777777643
No 155
>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni}
Probab=22.08 E-value=39 Score=28.55 Aligned_cols=31 Identities=6% Similarity=0.056 Sum_probs=23.9
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIED 291 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~ 291 (356)
+.|.+.+.++++|||++.... -.|+.+|+..
T Consensus 51 ~~~~a~~~l~~~Gid~s~~~a----r~l~~~d~~~ 81 (156)
T 2gi4_A 51 MHYGTKNKLAQLNIEHKNFTS----KKLTQKLCDE 81 (156)
T ss_dssp CCHHHHHHHHHTSCSCCCCCC----CBCCHHHHTT
T ss_pred CCHHHHHHHHHcCCCccCCcc----ccCCHHHhcc
Confidence 589999999999999976543 3677777643
No 156
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=21.68 E-value=17 Score=34.77 Aligned_cols=35 Identities=6% Similarity=-0.036 Sum_probs=23.1
Q ss_pred EccCCCEEecCCeEEEEeccc-----eeEEEecCCCeEEE
Q 018410 139 LKKEGDKVSPGEVLCEVETDK-----ATVEMECMEEGYLA 173 (356)
Q Consensus 139 ~v~~Gd~V~~Gd~L~eVETdK-----a~~ei~Ap~~G~I~ 173 (356)
.++.|+.|++||+|+++-.-. ...+|.+|.+|+|.
T Consensus 278 ~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 278 SVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred cCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 458899999999999875432 24457888888774
No 157
>2cwd_A Low molecular weight phosphotyrosine protein PHOS; tyrosine phosphatase, structural genomics; 1.90A {Thermus thermophilus}
Probab=21.34 E-value=55 Score=27.63 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=24.3
Q ss_pred CChHHHHHHHHcCCCcccccccCCCCcccHhhHHHH
Q 018410 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292 (356)
Q Consensus 257 ASP~ARkLA~e~gIDLs~V~GSGp~GRItk~DV~~~ 292 (356)
+.|.+.+.++++|||++ -.. -.|+.+|+..|
T Consensus 54 ~~p~a~~~l~e~Gid~s-~~a----r~l~~~~~~~~ 84 (161)
T 2cwd_A 54 MDPRARRVLEEEGAYFP-HVA----RRLTREDVLAY 84 (161)
T ss_dssp CCHHHHHHHHHHTCCCC-CCC----CBCCHHHHHHC
T ss_pred CCHHHHHHHHHcCcCcc-ccc----cCCCHhHhccC
Confidence 58999999999999998 443 36777877653
Done!