Your job contains 1 sequence.
>018413
MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR
DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV
IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA
YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC
HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL
EPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLYHSASKL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018413
(356 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2171641 - symbol:AT5G23690 species:3702 "Arabi... 1053 1.9e-106 1
TAIR|locus:2099473 - symbol:AT3G48830 species:3702 "Arabi... 1015 2.0e-102 1
TAIR|locus:2010439 - symbol:AT1G28090 species:3702 "Arabi... 870 4.7e-87 1
TAIR|locus:2053913 - symbol:AT2G17580 species:3702 "Arabi... 373 2.0e-48 2
TIGR_CMR|GSU_3250 - symbol:GSU_3250 "polyA polymerase" sp... 135 2.5e-12 2
UNIPROTKB|Q4K5Y6 - symbol:pcnB "Poly(A) polymerase" speci... 184 7.8e-12 1
UNIPROTKB|P0ABF1 - symbol:pcnB species:83333 "Escherichia... 173 1.6e-10 1
TIGR_CMR|SO_0872 - symbol:SO_0872 "polyA polymerase" spec... 162 3.2e-09 1
UNIPROTKB|Q9KUC8 - symbol:VC_0594 "PolyA polymerase" spec... 159 6.5e-09 1
TIGR_CMR|VC_0594 - symbol:VC_0594 "polyA polymerase" spec... 159 6.5e-09 1
TIGR_CMR|CBU_0286 - symbol:CBU_0286 "polyA polymerase" sp... 140 9.0e-07 1
TIGR_CMR|CPS_4310 - symbol:CPS_4310 "polyA polymerase" sp... 139 1.3e-06 1
>TAIR|locus:2171641 [details] [associations]
symbol:AT5G23690 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006396 "RNA
processing" evidence=IEA;ISS] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR002646 Pfam:PF01743
EMBL:CP002688 GO:GO:0003723 GO:GO:0006396 GO:GO:0016779
IPI:IPI00531764 RefSeq:NP_197758.2 UniGene:At.30996
ProteinModelPortal:F4KE92 SMR:F4KE92 PRIDE:F4KE92 DNASU:832434
EnsemblPlants:AT5G23690.1 GeneID:832434 KEGG:ath:AT5G23690
OMA:CHNSLWI Uniprot:F4KE92
Length = 527
Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
Identities = 206/351 (58%), Positives = 251/351 (71%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L R PKDFDI+TSAEL+EVVR F +CEIVG+RFPICHVH + ++EV
Sbjct: 108 ILKRTPKDFDILTSAELREVVRTFPRCEIVGRRFPICHVHIGDDLIEVSSFSTSAQNSSR 167
Query: 61 XXKYEFERPIGCD-EKDFIRWRNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKVQT 119
+ E + G D ++D IR NCLQRDFTINGLMFDPYAK RKAKV+T
Sbjct: 168 NTRTECKESSGSDGDEDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRT 227
Query: 120 VIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
VI A TSF +DC GFR S+ETAHF+K+LS + +LD+GR+LMEMNYML
Sbjct: 228 VIHAGTSFHQDCARILRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYML 287
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRXXXXXXXXXXXXXXXAPDRP 239
AYGSAEASLRLLWKFG+LE+LLPIQAAYL + GFRRRDKR APDRP
Sbjct: 288 AYGSAEASLRLLWKFGILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRP 347
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CHSSLWIAILAFHKAL+D+PR P+VVA FSLAV+N GD+LEAV+I ++I + HD+SF EL
Sbjct: 348 CHSSLWIAILAFHKALADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDKSFFEL 407
Query: 300 LEPRD-LDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
+EP + LDF+ L EVMD S + AL++MTD YF+S+AM+ Y +AP+SDL
Sbjct: 408 VEPEENLDFQTLLDEVMDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDL 458
>TAIR|locus:2099473 [details] [associations]
symbol:AT3G48830 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0004652 "polynucleotide adenylyltransferase
activity" evidence=ISS] [GO:0005739 "mitochondrion" evidence=ISM]
[GO:0006396 "RNA processing" evidence=IEA;ISS] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0009506
"plasmodesma" evidence=IDA] InterPro:IPR000504 InterPro:IPR002646
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01743 PROSITE:PS50102
SMART:SM00360 GO:GO:0009506 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0617 EMBL:AL132963 GO:GO:0016779 IPI:IPI00528017
PIR:T49279 RefSeq:NP_190452.1 UniGene:At.35678
ProteinModelPortal:Q9M300 SMR:Q9M300 PaxDb:Q9M300 PRIDE:Q9M300
EnsemblPlants:AT3G48830.1 GeneID:824044 KEGG:ath:AT3G48830
TAIR:At3g48830 HOGENOM:HOG000240765 InParanoid:Q9M300 OMA:FTISKET
PhylomeDB:Q9M300 ProtClustDB:CLSN2913480 Genevestigator:Q9M300
Uniprot:Q9M300
Length = 881
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 200/349 (57%), Positives = 243/349 (69%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L R PKDFDI+TSAEL+EVVR FS+CEI+GK+FPICHVH N ++EV
Sbjct: 105 ILKRTPKDFDILTSAELREVVRSFSRCEIIGKKFPICHVHIGNDMIEVSSFSTSAQNSLR 164
Query: 61 XXKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKVQTV 120
+ + G ++D IR+ NCLQRDFTINGLMFDPYAK +KAKV+TV
Sbjct: 165 NTRTGSGKSNGSYDEDSIRFNNCLQRDFTINGLMFDPYAKVIYDYLGGIEDIKKAKVRTV 224
Query: 121 IPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
A TSFQED GF S+ETAHF+K+LS + +L RGR+L+EMNYMLA
Sbjct: 225 FHAGTSFQEDSARILRGTRIAARLGFTISKETAHFLKNLSFLVQRLHRGRILLEMNYMLA 284
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRXXXXXXXXXXXXXXXAPDRPC 240
YGSAEASLRLLWKFG+LE+LLPIQAAYLV+ GF+RRDKR APD+PC
Sbjct: 285 YGSAEASLRLLWKFGILEILLPIQAAYLVRTGFKRRDKRSNLLLSLFGNLDKLLAPDKPC 344
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
HSSLW+ ILA HKAL+DQPR P VVA FSLAV+NGGD+LEAVK R++ K H+ SF ELL
Sbjct: 345 HSSLWLTILALHKALADQPRYPSVVAAFSLAVHNGGDVLEAVKNTRKVTKPHNRSFFELL 404
Query: 301 EPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
EP ++D + L EVMDF S K AL +MTD F+S+AMA Y +AP+SD+
Sbjct: 405 EPEEMDSQTLLDEVMDFDSSIKEALGQMTDGRFISKAMAAYPQAPYSDM 453
>TAIR|locus:2010439 [details] [associations]
symbol:AT1G28090 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR002646 Pfam:PF01743 EMBL:CP002684
GO:GO:0003723 GO:GO:0006396 GO:GO:0016779 IPI:IPI00536358
RefSeq:NP_174130.2 UniGene:At.40938 ProteinModelPortal:F4HUW0
SMR:F4HUW0 PRIDE:F4HUW0 EnsemblPlants:AT1G28090.1 GeneID:839702
KEGG:ath:AT1G28090 OMA:LPIQASY PhylomeDB:F4HUW0 Uniprot:F4HUW0
Length = 541
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 177/352 (50%), Positives = 226/352 (64%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L+RIPKDFD+IT+AELKEV +VF C+IVG+RFPICHV+ ++ I+EV
Sbjct: 126 ILDRIPKDFDVITTAELKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKA 185
Query: 61 XXKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKVQTV 120
K F RP GCDE+D+IRW+NCLQRDFT+NGLMFDP R +KV+TV
Sbjct: 186 PNK-SFRRPAGCDERDYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTV 244
Query: 121 IPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
A+ SF ED GF +++ A VK LS S+L+LD R+ ME+NYMLA
Sbjct: 245 SAANLSFVEDTARILRAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLA 304
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRXXXXXXXXXXXXXXXAPDRPC 240
YGSAEASLRLLW+FGL+E+LLPIQA+YLV GFRRRD R APDRPC
Sbjct: 305 YGSAEASLRLLWRFGLMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPC 364
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
LWI ILAFHKAL DQPRDP VVA F LA+Y+ + EA+ IAR +K H+ F EL
Sbjct: 365 SEFLWIGILAFHKALVDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELS 424
Query: 301 EP-RDL-DFEA-LKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
P +D D E+ + +V+ AES + A K+ + +++ AM+ Y +AP SD+
Sbjct: 425 SPEKDTADSESKISQQVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDM 476
>TAIR|locus:2053913 [details] [associations]
symbol:AT2G17580 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR002646 Pfam:PF01743 GO:GO:0009507 EMBL:CP002685
GO:GO:0003723 GO:GO:0006396 GO:GO:0016779 IPI:IPI00525115
RefSeq:NP_179349.2 UniGene:At.40128 ProteinModelPortal:F4INK3
SMR:F4INK3 PRIDE:F4INK3 EnsemblPlants:AT2G17580.1 GeneID:816265
KEGG:ath:AT2G17580 OMA:KEDCARI Uniprot:F4INK3
Length = 757
Score = 373 (136.4 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
Identities = 99/285 (34%), Positives = 137/285 (48%)
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKVQTVIPAST 125
F+ G D KD RWRN LQRDFTIN L ++P+ K++T++PA
Sbjct: 185 FKMYSGWDIKDCKRWRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKLRTLVPAHL 244
Query: 126 SFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAE 185
SF+EDC G S++ + S+ LD+ RL+MEMNYMLAYG+A
Sbjct: 245 SFKEDCARILRGLRIAARLGLSLSKDVKTAIPEFVSSVANLDQFRLIMEMNYMLAYGAAA 304
Query: 186 ASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRXXXXXXXXXXXXXXXAPDRPCHSSLW 245
S+ LL KF LL VLLP QAAYL + + D+P LW
Sbjct: 305 PSILLLMKFKLLHVLLPFQAAYL-DQASKTSLSSSLMLVRLFSNMDKLVSCDQPADPKLW 363
Query: 246 IAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEP-RD 304
IA+LAFH AL P++ +VV F+ +Y+G + +AV+ AR S E+ + R
Sbjct: 364 IAVLAFHIALVRNPQEAIVVRAFAALLYHG-NWSKAVEFAREHETSVIGYAPEVSKSSRK 422
Query: 305 LDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
E L V +F K +TD+ + +A+ Y FS L
Sbjct: 423 RSDEDLAEAVSEFTCLLKDTQYVLTDKEALREALYLYPDFKFSGL 467
Score = 166 (63.5 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+LNR+PKD+D+IT+A+LK++ R+F + +++GKRFPICHV +I+EV
Sbjct: 103 ILNRVPKDYDVITTADLKQIRRLFHRAQVIGKRFPICHVWMGGSIIEVSSFDTVAHSDSD 162
Query: 61 XXKYEFERPIGCDEK 75
K + + + D K
Sbjct: 163 LEKSKEKSGVSLDTK 177
Score = 41 (19.5 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 74 EKDFIRWRNCLQRDFTINGLMFDPYAK 100
+K+ +R L DF +GL+F P K
Sbjct: 448 DKEALREALYLYPDFKFSGLVFIPKKK 474
>TIGR_CMR|GSU_3250 [details] [associations]
symbol:GSU_3250 "polyA polymerase" species:243231
"Geobacter sulfurreducens PCA" [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] InterPro:IPR002646 InterPro:IPR010206
Pfam:PF01743 GO:GO:0005524 GO:GO:0006378 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR026007
PANTHER:PTHR13734:SF5 GO:GO:0004652 HOGENOM:HOG000256527 KO:K00970
InterPro:IPR025866 Pfam:PF12626 TIGRFAMs:TIGR01942
RefSeq:NP_954291.2 ProteinModelPortal:Q747L5 GeneID:2686371
KEGG:gsu:GSU3250 PATRIC:22029341 ProtClustDB:CLSK829184
BioCyc:GSUL243231:GH27-3226-MONOMER Uniprot:Q747L5
Length = 459
Score = 135 (52.6 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEV 48
+L R PKDFD+ T A ++ R+F C +VG+RF + H+HF + I+EV
Sbjct: 53 LLGREPKDFDVATDATPNQIKRIFRNCRLVGRRFRLAHIHFTDEIIEV 100
Score = 99 (39.9 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 32/127 (25%), Positives = 50/127 (39%)
Query: 82 NCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKVQTVIPASTSFQEDCXXXXXXXXXX 141
+ L+RDFT+N L + ++ ++T+ F ED
Sbjct: 157 DALRRDFTVNALAYCIADFSIIDYAGGMEDLQRGMIRTIGDPRVRFTEDPVRMLRAVRFA 216
Query: 142 XXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLL 201
GF ET + L+P+I + RL EM + G E + +LL + GL L
Sbjct: 217 AVLGFAVEEETWQAMLDLAPAITRATAPRLYEEMLKLFLSGEGERAYQLLRQTGLFAHLF 276
Query: 202 PIQAAYL 208
P A+L
Sbjct: 277 PGFEAWL 283
>UNIPROTKB|Q4K5Y6 [details] [associations]
symbol:pcnB "Poly(A) polymerase" species:220664
"Pseudomonas protegens Pf-5" [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=ISS] [GO:0006276 "plasmid
maintenance" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] InterPro:IPR002646 InterPro:IPR010206 Pfam:PF01743
GO:GO:0005524 GO:GO:0006378 GO:GO:0003723 EMBL:CP000076
GO:GO:0006276 eggNOG:COG0617 InterPro:IPR026007
PANTHER:PTHR13734:SF5 GO:GO:0004652 KO:K00970 InterPro:IPR025866
Pfam:PF12626 TIGRFAMs:TIGR01942 RefSeq:YP_262347.2 GeneID:3479671
KEGG:pfl:PFL_5275 PATRIC:19880025 HOGENOM:HOG000256526
ProtClustDB:CLSK868862 BioCyc:PFLU220664:GIX8-5316-MONOMER
Uniprot:Q4K5Y6
Length = 463
Score = 184 (69.8 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 53/213 (24%), Positives = 85/213 (39%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXX--XXX 58
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV
Sbjct: 67 LLNITPKDFDVATSATPEQVKAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNED 126
Query: 59 XXXXKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKA 115
G +D + + +RDFTIN L +DP ++ R
Sbjct: 127 DEDSNQSSRNESGRILRDNVYGTLEEDAQRRDFTINALYYDPVSERILDYANGVHDIRNN 186
Query: 116 KVQTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + +QED F + TA ++ L+P + ++ RL E+
Sbjct: 187 LIRLIGDPRQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPMLREIPSARLFEEV 246
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
+ G A + +L L + L P A L
Sbjct: 247 LKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>UNIPROTKB|P0ABF1 [details] [associations]
symbol:pcnB species:83333 "Escherichia coli K-12"
[GO:0004652 "polynucleotide adenylyltransferase activity"
evidence=IEA;IDA] [GO:0009451 "RNA modification"
evidence=IGI;IMP;IDA] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0006276 "plasmid maintenance" evidence=IEA;IMP] [GO:0006378
"mRNA polyadenylation" evidence=IEA;IMP] [GO:0003723 "RNA binding"
evidence=IEA;IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002646 InterPro:IPR010206 Pfam:PF01743
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006378
GO:GO:0006351 GO:GO:0003723 GO:GO:0006276 eggNOG:COG0617
InterPro:IPR026007 PANTHER:PTHR13734:SF5 GO:GO:0009451
GO:GO:0004652 EMBL:M20574 EMBL:S48039 PIR:G64737 RefSeq:NP_414685.4
RefSeq:YP_488446.1 ProteinModelPortal:P0ABF1 SMR:P0ABF1
DIP:DIP-47859N EnsemblBacteria:EBESCT00000000999
EnsemblBacteria:EBESCT00000001000 EnsemblBacteria:EBESCT00000001001
EnsemblBacteria:EBESCT00000017202 GeneID:12934035 GeneID:947318
KEGG:ecj:Y75_p0140 KEGG:eco:b0143 PATRIC:32115393 EchoBASE:EB0684
EcoGene:EG10690 HOGENOM:HOG000256527 KO:K00970 OMA:RFMAKLD
ProtClustDB:PRK11623 BioCyc:EcoCyc:EG10690-MONOMER
BioCyc:ECOL316407:JW5808-MONOMER BioCyc:MetaCyc:EG10690-MONOMER
Genevestigator:P0ABF1 InterPro:IPR025866 Pfam:PF12626
TIGRFAMs:TIGR01942 Uniprot:P0ABF1
Length = 465
Score = 173 (66.0 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 53/215 (24%), Positives = 87/215 (40%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV
Sbjct: 73 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 132
Query: 61 XXKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKV 117
G +D I + +RDFTIN L + + +
Sbjct: 133 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVI 192
Query: 118 QTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED G R S ETA + L+ + + RL E
Sbjct: 193 RLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLK 252
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + +LL ++ L + L P Y ++G
Sbjct: 253 LLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 287
>TIGR_CMR|SO_0872 [details] [associations]
symbol:SO_0872 "polyA polymerase" species:211586
"Shewanella oneidensis MR-1" [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] InterPro:IPR002646 InterPro:IPR010206
Pfam:PF01743 GO:GO:0005524 GO:GO:0006378 GO:GO:0003723
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR026007
PANTHER:PTHR13734:SF5 GO:GO:0004652 KO:K00970 OMA:RFMAKLD
InterPro:IPR025866 Pfam:PF12626 TIGRFAMs:TIGR01942
HOGENOM:HOG000256526 RefSeq:NP_716503.2 ProteinModelPortal:Q8EIG7
GeneID:1168719 KEGG:son:SO_0872 PATRIC:23521405
ProtClustDB:CLSK905987 Uniprot:Q8EIG7
Length = 478
Score = 162 (62.1 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 48/211 (22%), Positives = 86/211 (40%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV
Sbjct: 85 LLGLEPKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFRGHHGESNE 144
Query: 61 X-XKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKVQT 119
K E + D + +RDFT+N L +D + ++
Sbjct: 145 KISKANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTLRL 204
Query: 120 VIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ T ++ED TA +K L+P + + R+ E+ +
Sbjct: 205 IGDPETRYREDPVRMLRAVRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLKLF 264
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
G A A+ ++ ++ L L P Q L+K
Sbjct: 265 FAGKAVANFDMMQEYKLFAPLFP-QVDALLK 294
>UNIPROTKB|Q9KUC8 [details] [associations]
symbol:VC_0594 "PolyA polymerase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] InterPro:IPR002646 InterPro:IPR010206
Pfam:PF01743 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006378 GO:GO:0003723 GO:GO:0006396 InterPro:IPR026007
PANTHER:PTHR13734:SF5 GO:GO:0004652 KO:K00970 OMA:RFMAKLD
InterPro:IPR025866 Pfam:PF12626 TIGRFAMs:TIGR01942 PIR:C82304
RefSeq:NP_230244.1 ProteinModelPortal:Q9KUC8 GeneID:2615382
KEGG:vch:VC0594 PATRIC:20080300 ProtClustDB:CLSK874026
Uniprot:Q9KUC8
Length = 457
Score = 159 (61.0 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 47/210 (22%), Positives = 84/210 (40%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 122
Query: 61 XXKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKV 117
+ G +D + + +RDFTIN + ++ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED F +TA ++ L+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAY 207
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEH 272
>TIGR_CMR|VC_0594 [details] [associations]
symbol:VC_0594 "polyA polymerase" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] InterPro:IPR002646 InterPro:IPR010206
Pfam:PF01743 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006378 GO:GO:0003723 GO:GO:0006396 InterPro:IPR026007
PANTHER:PTHR13734:SF5 GO:GO:0004652 KO:K00970 OMA:RFMAKLD
InterPro:IPR025866 Pfam:PF12626 TIGRFAMs:TIGR01942 PIR:C82304
RefSeq:NP_230244.1 ProteinModelPortal:Q9KUC8 GeneID:2615382
KEGG:vch:VC0594 PATRIC:20080300 ProtClustDB:CLSK874026
Uniprot:Q9KUC8
Length = 457
Score = 159 (61.0 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 47/210 (22%), Positives = 84/210 (40%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 122
Query: 61 XXKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKV 117
+ G +D + + +RDFTIN + ++ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED F +TA ++ L+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAY 207
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEH 272
>TIGR_CMR|CBU_0286 [details] [associations]
symbol:CBU_0286 "polyA polymerase" species:227377
"Coxiella burnetii RSA 493" [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] InterPro:IPR002646 InterPro:IPR010206
Pfam:PF01743 GO:GO:0005524 GO:GO:0006378 GO:GO:0003723
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0004810
InterPro:IPR026007 PANTHER:PTHR13734:SF5 GO:GO:0004652
HOGENOM:HOG000256527 KO:K00970 OMA:RFMAKLD InterPro:IPR025866
Pfam:PF12626 TIGRFAMs:TIGR01942 RefSeq:NP_819330.1
ProteinModelPortal:Q83EM9 PRIDE:Q83EM9 GeneID:1208168
KEGG:cbu:CBU_0286 PATRIC:17929263 ProtClustDB:CLSK913956
BioCyc:CBUR227377:GJ7S-292-MONOMER Uniprot:Q83EM9
Length = 439
Score = 140 (54.3 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 48/215 (22%), Positives = 82/215 (38%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXX 60
+L+ PKDFDI T+A E+ ++F ++G+RF + HV+F N I+EV
Sbjct: 67 LLSYHPKDFDIATNARPHEIRKLFKNSRLIGRRFRLVHVYFPNEIIEVSTFRANAEELLK 126
Query: 61 XXKYEFERPIGC-----DEKDFIRWRNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKA 115
+ G D + +RDFT+N L ++ +
Sbjct: 127 EEPLSEMQKTGATMLSEDNTYGTIEEDAWRRDFTVNALYYNITDFSVIDFTGGMRDLHQR 186
Query: 116 KVQTVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + + + ED F+ +T +K L + + RL E+
Sbjct: 187 LIRMIGDPTQRYHEDPVRLLRAIRLAAKLDFKIHPDTEEPLKKLHNLLRHVPSARLFTEV 246
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+ G A S +LL + + L P A L K
Sbjct: 247 LKIFFEGHAVRSYQLLKQTHYMRTLFPEAATILEK 281
>TIGR_CMR|CPS_4310 [details] [associations]
symbol:CPS_4310 "polyA polymerase" species:167879
"Colwellia psychrerythraea 34H" [GO:0004652 "polynucleotide
adenylyltransferase activity" evidence=ISS] [GO:0006401 "RNA
catabolic process" evidence=ISS] InterPro:IPR002646
InterPro:IPR010206 Pfam:PF01743 GO:GO:0005524 GO:GO:0006378
GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0617 InterPro:IPR026007 PANTHER:PTHR13734:SF5
GO:GO:0004652 HOGENOM:HOG000256527 KO:K00970 OMA:RFMAKLD
InterPro:IPR025866 Pfam:PF12626 TIGRFAMs:TIGR01942
RefSeq:YP_270960.1 ProteinModelPortal:Q47W62 STRING:Q47W62
GeneID:3519879 KEGG:cps:CPS_4310 PATRIC:21471471
BioCyc:CPSY167879:GI48-4320-MONOMER Uniprot:Q47W62
Length = 474
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 48/204 (23%), Positives = 74/204 (36%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVXXXXXXXXXXXXXXKY- 64
PKDFDI T+A E+ +F C ++G+RF + H+ F I+EV K
Sbjct: 81 PKDFDIATNATPDEIKELFRNCRLIGRRFRLAHIVFGREIIEVATFRGHHDNASEQEKSC 140
Query: 65 ---EFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKXXXXXXXXXXXXRKAKVQ 118
+ G +D I + +RDFTIN L + ++
Sbjct: 141 KKTSKQSEDGMLLRDNIYGSIEEDAERRDFTINALYYSAKDFKVYDFANGVQDVNDKVIR 200
Query: 119 TVIPASTSFQEDCXXXXXXXXXXXXXGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ T ++ED + S +T +K LS + + RL E M
Sbjct: 201 LIGDPETRYREDPVRMLRAIRFATKLDMQISDDTKAPIKELSTLMANIPAARLFEEFLKM 260
Query: 179 LAYGSAEASLRLLWKFGLLEVLLP 202
G A A+ L + L P
Sbjct: 261 FIAGKAVANFEQLRSYNLFGYFFP 284
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.138 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 356 302 0.00097 115 3 11 22 0.46 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 609 (65 KB)
Total size of DFA: 221 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.00u 0.26s 20.26t Elapsed: 00:00:01
Total cpu time: 20.00u 0.26s 20.26t Elapsed: 00:00:01
Start: Sat May 11 12:36:17 2013 End: Sat May 11 12:36:18 2013