BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018413
(356 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255540089|ref|XP_002511109.1| poly(A) polymerase, putative [Ricinus communis]
gi|223550224|gb|EEF51711.1| poly(A) polymerase, putative [Ricinus communis]
Length = 524
Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust.
Identities = 266/349 (76%), Positives = 306/349 (87%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L RIPKDFDIITSAEL+EV R FS+CEIVG+RFPICHV+ +T+VEVSSFST+G++F
Sbjct: 111 ILKRIPKDFDIITSAELREVARAFSRCEIVGRRFPICHVYVGDTVVEVSSFSTTGQKFGG 170
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D+ Y+ + PI CDEKD++RWRNC QRDFTINGLMFDPY KI+YDYIGG+EDIRKAKV+TV
Sbjct: 171 DWNYDTQSPIDCDEKDYMRWRNCSQRDFTINGLMFDPYEKIVYDYIGGLEDIRKAKVRTV 230
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
PAS SFQEDCARILRA+RIAARLGFRFSRETAHF+KH + SIL+LD+GRLLMEMNYMLA
Sbjct: 231 TPASNSFQEDCARILRAVRIAARLGFRFSRETAHFLKHFAHSILRLDKGRLLMEMNYMLA 290
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGS+EASLRLLWKFGLLE+LLPIQAAY V GF+RRDKRSN+LLSL SN+DKLLAPDRPC
Sbjct: 291 YGSSEASLRLLWKFGLLEILLPIQAAYFVHCGFKRRDKRSNMLLSLLSNMDKLLAPDRPC 350
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
HS LWI ILAFHKALS+QPRDPLVVA F LAV+NGGDM EAV IA+RI+K HD SF EL
Sbjct: 351 HSCLWIGILAFHKALSEQPRDPLVVAAFCLAVHNGGDMSEAVNIAKRIDKPHDMSFHELC 410
Query: 301 EPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
+P D+D + L EVMD A+S K LS MTDE++VSQAMA Y +AP+SDL
Sbjct: 411 KPGDMDTDQLVDEVMDLAQSIKRVLSMMTDEHYVSQAMAEYPQAPYSDL 459
>gi|225425222|ref|XP_002266814.1| PREDICTED: CCA-adding enzyme [Vitis vinifera]
gi|296088167|emb|CBI35659.3| unnamed protein product [Vitis vinifera]
Length = 537
Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust.
Identities = 260/350 (74%), Positives = 304/350 (86%), Gaps = 1/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDIITSAELKEV+R F +CE+VGKRFPICHVH +TIVEVSSFSTSG+R R
Sbjct: 113 ILKRTPKDFDIITSAELKEVLRAFPRCEVVGKRFPICHVHVNDTIVEVSSFSTSGKRTGR 172
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
Y RP CD+ D+IRWRNCLQRDFTINGLMFDPY KI+YDY+GG++DI+KAKV+TV
Sbjct: 173 KLDYILRRPPDCDDHDYIRWRNCLQRDFTINGLMFDPYTKIVYDYMGGMQDIKKAKVRTV 232
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
IPA+ SF EDCARILR +RIAARLGFRF+++ AH V+ LS S+L+LD+GR+LMEMNYMLA
Sbjct: 233 IPANISFVEDCARILRGVRIAARLGFRFTKDIAHSVRELSCSVLRLDKGRILMEMNYMLA 292
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLRLLWKFGLLE+LLPIQAAYLV GFRRRD+RSN+LLSLFSNLD+L+APDRPC
Sbjct: 293 YGSAEASLRLLWKFGLLEILLPIQAAYLVSQGFRRRDQRSNMLLSLFSNLDRLVAPDRPC 352
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
H+SLWI +LAFHKAL DQPR P+VVA FSLAV+NGG + EAV+IARRI++ HD+SF ELL
Sbjct: 353 HNSLWIGMLAFHKALVDQPRHPMVVAAFSLAVHNGGSLSEAVEIARRISQPHDQSFSELL 412
Query: 301 EPRDLDF-EALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
EP+DLD E+L E+MD A S K AL KMTDE+FVSQAM+ Y RAP+SDL
Sbjct: 413 EPQDLDSDESLIDEIMDLAASVKSALMKMTDEHFVSQAMSKYPRAPYSDL 462
>gi|224119782|ref|XP_002318161.1| predicted protein [Populus trichocarpa]
gi|222858834|gb|EEE96381.1| predicted protein [Populus trichocarpa]
Length = 515
Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust.
Identities = 260/349 (74%), Positives = 303/349 (86%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L RIPKDFDIITSAELKEVVR FS CEIVGK FPICHVH +TIVEVSSFST+GR+F
Sbjct: 104 ILKRIPKDFDIITSAELKEVVRTFSHCEIVGKWFPICHVHVGDTIVEVSSFSTTGRKFKV 163
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + + PI CDEKD++RW+NCLQRDFTINGLMFDPY +I+YDY+GG+EDI+KAKV+TV
Sbjct: 164 DLRNDIICPIDCDEKDYVRWKNCLQRDFTINGLMFDPYKRIVYDYMGGLEDIKKAKVRTV 223
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
IPA SFQEDCARILRA+RIAARLGFRF+RETAHFVK+LS +L+LD+ R++MEMNYMLA
Sbjct: 224 IPAGISFQEDCARILRAVRIAARLGFRFTRETAHFVKNLSRLLLRLDKPRIMMEMNYMLA 283
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLR+LWKFGLLE+LLPIQAAY V+ GF+RRDKRSN+LL LFSNLDKLLAPDRPC
Sbjct: 284 YGSAEASLRILWKFGLLELLLPIQAAYFVRDGFKRRDKRSNMLLCLFSNLDKLLAPDRPC 343
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
HSSLW+ ILAFHKAL+DQPRDP+VVA F LAV+NGGD+L V +AR+I K HD SF EL
Sbjct: 344 HSSLWVGILAFHKALADQPRDPMVVAAFCLAVHNGGDILGGVNMARKITKPHDISFHELT 403
Query: 301 EPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
+P+DLD + L EV+DFA S K L+ MTDEY+VS AMA Y +AP+SDL
Sbjct: 404 KPQDLDSKMLIDEVVDFAASVKQVLNWMTDEYYVSLAMAEYPQAPYSDL 452
>gi|224134120|ref|XP_002321741.1| predicted protein [Populus trichocarpa]
gi|222868737|gb|EEF05868.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/349 (72%), Positives = 296/349 (84%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDIITSAELKEVVR F QC IVGKRFPICHVH +TIVEVSSFST+G +F
Sbjct: 68 ILKRTPKDFDIITSAELKEVVRTFPQCIIVGKRFPICHVHVGDTIVEVSSFSTTGPKFRL 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D PI CDEKD++RW+NCL+RD TINGLMFDPY +I+YDY+GG+EDI+KAKV+TV
Sbjct: 128 DLSNGISPPIDCDEKDYVRWKNCLRRDLTINGLMFDPYKRIVYDYVGGLEDIKKAKVRTV 187
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+PASTSFQEDCARILRA+RIAARLGFRF+RETAHF+K+LS S+L+LD R++MEMNYMLA
Sbjct: 188 VPASTSFQEDCARILRAVRIAARLGFRFTRETAHFIKNLSRSLLRLDNQRIMMEMNYMLA 247
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLR+LWKFGLLE+LLP QAAY V+ GF+R+DKRSN+LL LFSNLDK LAPDRPC
Sbjct: 248 YGSAEASLRILWKFGLLELLLPFQAAYFVRDGFKRQDKRSNMLLCLFSNLDKHLAPDRPC 307
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
H+SLW+ ILAFHKALSDQPRDP+VVA F LAV+NGGD+L VK+ ++ K HD SF EL
Sbjct: 308 HNSLWVGILAFHKALSDQPRDPMVVAAFCLAVHNGGDILGGVKMVKKFTKPHDVSFHELS 367
Query: 301 EPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
EP++L+ EAL EV+DFA S K L MTDEY VSQAMA Y +AP SDL
Sbjct: 368 EPQNLNSEALVDEVVDFAASVKQVLYWMTDEYCVSQAMAEYPQAPCSDL 416
>gi|356507386|ref|XP_003522448.1| PREDICTED: uncharacterized protein LOC100796540 [Glycine max]
Length = 540
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/349 (71%), Positives = 293/349 (83%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDIITSAELKEV R FS EIVGKRFP+CHVH ++TIVEVSSF T+ +
Sbjct: 113 ILKKTPKDFDIITSAELKEVTRTFSWSEIVGKRFPVCHVHMDDTIVEVSSFDTTKCKAGM 172
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
+F + E P GC +KD +RW NCL RDFTINGLM DPYA+I YDY GGIEDIRKAKV+TV
Sbjct: 173 EFSHHIEAPSGCGKKDHLRWMNCLNRDFTINGLMLDPYARIAYDYFGGIEDIRKAKVRTV 232
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
IPA TSFQEDCARILRAIRIAARLGF S+ETAHF+K+LS S+L LD+GRLLMEMNYMLA
Sbjct: 233 IPAETSFQEDCARILRAIRIAARLGFSISKETAHFIKNLSSSVLSLDKGRLLMEMNYMLA 292
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
+GS EASLRLLWKFGLL++LLP QAAY +HGF+RRD+R+N+LLSLFSNLDKLLAP+RPC
Sbjct: 293 FGSGEASLRLLWKFGLLDILLPFQAAYFAQHGFQRRDRRTNMLLSLFSNLDKLLAPNRPC 352
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
H+SLW+ ILA HKALSD+PR+PL VA FSLAV+NGG++LEAV +A INK HD F ELL
Sbjct: 353 HNSLWVGILALHKALSDRPRNPLAVAAFSLAVHNGGNLLEAVSMAGMINKPHDVRFPELL 412
Query: 301 EPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
+P LD EAL+ E++D AES +G + +MT+EYFVSQAMA Y +AP S+L
Sbjct: 413 DPSGLDAEALEAEILDLAESVRGTILQMTNEYFVSQAMADYPQAPRSNL 461
>gi|297808367|ref|XP_002872067.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297317904|gb|EFH48326.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 533
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 251/351 (71%), Positives = 302/351 (86%), Gaps = 2/351 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI+TSAEL+EVV+ F +CEIVG+RFPICHVH + +VEVSSFSTS + + R
Sbjct: 112 ILKRTPKDFDILTSAELREVVQTFPRCEIVGRRFPICHVHIGDDLVEVSSFSTSAQNYPR 171
Query: 61 DFKYEFERPIGCD-EKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + E + G D ++D IR NCLQRDFTINGLMFDPYAK++YDY+GG+EDIRKAKV+T
Sbjct: 172 NTRTESKESSGSDGDEDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRT 231
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
VI A TSFQ+DCARILRAIRIAARLGFR S+ETAHF+K+LS + +LD+GR+LMEMNYML
Sbjct: 232 VIHAGTSFQQDCARILRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYML 291
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGSAEASLRLLWKFGLLE+LLPIQAAYL + GFRRRDKR+N+LLSLF+NLDKLLAPDRP
Sbjct: 292 AYGSAEASLRLLWKFGLLEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRP 351
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CHSSLWIAILAFHKAL+DQPR PLVVA FSLAV+N GD+LEAVKI ++I + HD+SF EL
Sbjct: 352 CHSSLWIAILAFHKALADQPRSPLVVAAFSLAVHNCGDILEAVKITKKIARPHDKSFFEL 411
Query: 300 LEP-RDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
+EP +LDF+ L EVMD S K AL++MTD Y++S+AM+ Y +AP+SDL
Sbjct: 412 VEPEENLDFQTLLDEVMDLDASIKDALNQMTDGYYISKAMSAYPQAPYSDL 462
>gi|22327016|ref|NP_197758.2| Polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
gi|332005816|gb|AED93199.1| Polynucleotide adenylyltransferase family protein [Arabidopsis
thaliana]
Length = 527
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/351 (70%), Positives = 301/351 (85%), Gaps = 2/351 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI+TSAEL+EVVR F +CEIVG+RFPICHVH + ++EVSSFSTS + SR
Sbjct: 108 ILKRTPKDFDILTSAELREVVRTFPRCEIVGRRFPICHVHIGDDLIEVSSFSTSAQNSSR 167
Query: 61 DFKYEFERPIGCD-EKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + E + G D ++D IR NCLQRDFTINGLMFDPYAK++YDY+GG+EDIRKAKV+T
Sbjct: 168 NTRTECKESSGSDGDEDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRT 227
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
VI A TSF +DCARILRAIRIAARLGFR S+ETAHF+K+LS + +LD+GR+LMEMNYML
Sbjct: 228 VIHAGTSFHQDCARILRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYML 287
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGSAEASLRLLWKFG+LE+LLPIQAAYL + GFRRRDKR+N+LLSLF+NLDKLLAPDRP
Sbjct: 288 AYGSAEASLRLLWKFGILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRP 347
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CHSSLWIAILAFHKAL+D+PR P+VVA FSLAV+N GD+LEAV+I ++I + HD+SF EL
Sbjct: 348 CHSSLWIAILAFHKALADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDKSFFEL 407
Query: 300 LEP-RDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
+EP +LDF+ L EVMD S + AL++MTD YF+S+AM+ Y +AP+SDL
Sbjct: 408 VEPEENLDFQTLLDEVMDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDL 458
>gi|18377862|gb|AAL67117.1| AT5g23690/MQM1_4 [Arabidopsis thaliana]
gi|22137254|gb|AAM91472.1| AT5g23690/MQM1_4 [Arabidopsis thaliana]
Length = 527
Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust.
Identities = 246/351 (70%), Positives = 300/351 (85%), Gaps = 2/351 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI+TSAEL+EVVR F +CEIVG+RFPICHVH + ++EVSSFSTS + SR
Sbjct: 108 ILKRTPKDFDILTSAELREVVRTFPRCEIVGRRFPICHVHIGDDLIEVSSFSTSAQNSSR 167
Query: 61 DFKYEFERPIGCD-EKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + E + G D ++D IR NCLQRDFTINGLMFDPYAK++YDY+GG+EDIRKAKV+T
Sbjct: 168 NTRTECKESSGSDGDEDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRT 227
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
I A TSF +DCARILRAIRIAARLGFR S+ETAHF+K+LS + +LD+GR+LMEMNYML
Sbjct: 228 EIHAGTSFHQDCARILRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYML 287
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGSAEASLRLLWKFG+LE+LLPIQAAYL + GFRRRDKR+N+LLSLF+NLDKLLAPDRP
Sbjct: 288 AYGSAEASLRLLWKFGILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRP 347
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CHSSLWIAILAFHKAL+D+PR P+VVA FSLAV+N GD+LEAV+I ++I + HD+SF EL
Sbjct: 348 CHSSLWIAILAFHKALADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDKSFFEL 407
Query: 300 LEP-RDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
+EP +LDF+ L EVMD S + AL++MTD YF+S+AM+ Y +AP+SDL
Sbjct: 408 VEPEENLDFQTLLDEVMDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDL 458
>gi|357520559|ref|XP_003630568.1| Poly(A) polymerase [Medicago truncatula]
gi|355524590|gb|AET05044.1| Poly(A) polymerase [Medicago truncatula]
Length = 543
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 242/349 (69%), Positives = 295/349 (84%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI+TSA+LKEV+R FS CEIVGKRFPICHVH + IVEVSSF+T+ R+ R
Sbjct: 128 ILRQTPKDFDILTSADLKEVMRTFSWCEIVGKRFPICHVHMDGIIVEVSSFNTAKRKPGR 187
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
F ++ E P G D++D++RWRNC+ RDFTING MFDP+AKI+YDY+GG+EDI KAKV+T+
Sbjct: 188 HFAHDIEAPKGFDKEDYLRWRNCVNRDFTINGFMFDPFAKIVYDYMGGMEDIIKAKVRTM 247
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+PA+TSFQEDCARILRAIRIAARLGF S ETA VKHLS SIL+LD+GRLLMEMNYMLA
Sbjct: 248 VPAATSFQEDCARILRAIRIAARLGFSISTETARSVKHLSYSILRLDKGRLLMEMNYMLA 307
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGS EASLRLLWKFGLL++LLP QA Y V+HGFRRRDKR+N+LLSLF NLDKLLAP+ PC
Sbjct: 308 YGSGEASLRLLWKFGLLDILLPFQALYFVRHGFRRRDKRTNMLLSLFFNLDKLLAPNSPC 367
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
HSSLW+ ILA HK+LSDQPR+PLV+A FSLAV+NGG++LEAV IARRINK HD F EL
Sbjct: 368 HSSLWVGILALHKSLSDQPRNPLVIAAFSLAVHNGGNLLEAVDIARRINKPHDIRFPELS 427
Query: 301 EPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
+P DL+ +AL++E++D ES K +L +MT + V++AM Y +AP SD+
Sbjct: 428 DPCDLNAKALENEILDLVESVKVSLLQMTSRHSVARAMVDYPQAPHSDM 476
>gi|297816090|ref|XP_002875928.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321766|gb|EFH52187.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 610
Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust.
Identities = 245/349 (70%), Positives = 288/349 (82%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI+TSAEL+EVVR FS+CEIVGKRFPICHVH N ++EVSSFSTS + R
Sbjct: 104 ILKRTPKDFDILTSAELREVVRTFSRCEIVGKRFPICHVHVGNEMIEVSSFSTSAQNSPR 163
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
+ + + G ++D R NCLQRDFTINGLMFDPYA+++YDY+GGIEDI+KAK++TV
Sbjct: 164 NMRTGSGKSNGSYDEDNTRLNNCLQRDFTINGLMFDPYAEVVYDYLGGIEDIKKAKIRTV 223
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
A TSFQEDCARILR RIAARLGF S+ETAHF+K+LS + +L RGR+LMEMNYMLA
Sbjct: 224 FHAGTSFQEDCARILRGTRIAARLGFTISKETAHFLKNLSFLVQRLHRGRILMEMNYMLA 283
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLRLLWKFG+LE+LLPIQAAYLV GF+RRDKRSNLLLSLF NLDKLLAPDRPC
Sbjct: 284 YGSAEASLRLLWKFGILEILLPIQAAYLVHTGFKRRDKRSNLLLSLFGNLDKLLAPDRPC 343
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
HSSLW+ ILA HKAL+DQPR P VVA FSLAV+NGGD+LEAVKI R++ K H+ SF ELL
Sbjct: 344 HSSLWLTILALHKALADQPRYPSVVAAFSLAVHNGGDVLEAVKITRKVTKPHNRSFFELL 403
Query: 301 EPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
EP +LD + L EVMDF S K AL +MTD F+S+AMA Y +AP+SD+
Sbjct: 404 EPEELDSQTLLDEVMDFDSSIKEALGQMTDGRFISKAMAAYPQAPYSDM 452
>gi|356511530|ref|XP_003524478.1| PREDICTED: CCA-adding enzyme-like [Glycine max]
Length = 538
Score = 513 bits (1320), Expect = e-143, Method: Compositional matrix adjust.
Identities = 247/350 (70%), Positives = 296/350 (84%), Gaps = 1/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDIITSA+LKEV + FS CEIVGKRFPICHVH + TIVEVSSF+T+ + S
Sbjct: 111 ILKQTPKDFDIITSADLKEVRKTFSLCEIVGKRFPICHVHMDGTIVEVSSFNTARCKSSM 170
Query: 61 DFKYE-FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F Y+ E P CD++D++RWRNCL+RDFTINGLMFDPYA+I+YDY+GG+EDI KAKV+T
Sbjct: 171 HFIYDDIEAPHDCDKEDYLRWRNCLRRDFTINGLMFDPYARIVYDYMGGMEDIVKAKVRT 230
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
V+PA+TSF+EDCARILRAIRIAARLGF SRETA VK+LS S+L+LDR RLLME+NYML
Sbjct: 231 VVPAATSFREDCARILRAIRIAARLGFSISRETAQSVKNLSYSVLRLDRSRLLMEINYML 290
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGS EASLRLLW+FGLL++LLP QAAY V+ GFRRRDKR+NLLLS FSN+DKLLAP+RP
Sbjct: 291 AYGSGEASLRLLWRFGLLDILLPFQAAYFVRGGFRRRDKRTNLLLSFFSNVDKLLAPNRP 350
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CHSSLW+ ILA HKALSD+PRD VVA FSLA++NGG++ EA+ IARRINK+HD F EL
Sbjct: 351 CHSSLWVVILALHKALSDKPRDSSVVAAFSLALHNGGNLSEAISIARRINKTHDARFPEL 410
Query: 300 LEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
L+P LD E L+ E++D AES KG+L +M D +FVS AMA Y +AP SDL
Sbjct: 411 LDPSGLDEEDLEAEILDLAESVKGSLLQMKDRHFVSGAMADYPQAPHSDL 460
>gi|356527592|ref|XP_003532392.1| PREDICTED: CCA-adding enzyme-like [Glycine max]
Length = 527
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 245/350 (70%), Positives = 296/350 (84%), Gaps = 1/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDIITSA+LKEV + FS CEIVGKRFPICHVH + TIVEVSSF+T+ + S
Sbjct: 111 ILKQTPKDFDIITSADLKEVRKTFSWCEIVGKRFPICHVHMDGTIVEVSSFNTARCKSSM 170
Query: 61 DFKYE-FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F Y+ E P CD++D++RWRNCL+RDFTINGLMFDPYA+I+YDY+GG+EDI KAKV+T
Sbjct: 171 HFIYDDIEAPNDCDKEDYLRWRNCLKRDFTINGLMFDPYARIVYDYMGGMEDIIKAKVRT 230
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
V+PA+TSF+EDCARILRAIR+AARLGF SRETA VK+LS S+L+LD+GRL ME+NYML
Sbjct: 231 VVPAATSFREDCARILRAIRVAARLGFSISRETAQSVKNLSYSVLRLDKGRLWMEINYML 290
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGS EASLRLLW+FGLL++LLP QAAY V GFRRRDKR+NLLLS FSN+DKLLAP+RP
Sbjct: 291 AYGSGEASLRLLWRFGLLDILLPFQAAYFVCGGFRRRDKRTNLLLSFFSNVDKLLAPNRP 350
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CHSSLW+AILA HKALSD+PRD VVA FSLA++NGG++ EA+ IARRINK+HD F EL
Sbjct: 351 CHSSLWVAILALHKALSDKPRDSSVVAAFSLALHNGGNLSEAINIARRINKAHDARFPEL 410
Query: 300 LEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
L+P LD E L+ E++D AES KG+L +MTD + VS AMA Y +AP S+L
Sbjct: 411 LDPSGLDEENLEAEILDLAESVKGSLLQMTDRHLVSGAMADYPQAPHSNL 460
>gi|449440506|ref|XP_004138025.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus]
Length = 441
Score = 507 bits (1306), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/350 (67%), Positives = 289/350 (82%), Gaps = 1/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LNR+PKDFDIITSA+LKEV R+F CEIVG+RFPICHVH + TIVEVSSFSTS R F R
Sbjct: 31 ILNRVPKDFDIITSAQLKEVSRIFLWCEIVGRRFPICHVHIDGTIVEVSSFSTSNRPFDR 90
Query: 61 DFK-YEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
E+P+ C+E DF+RW+NCLQRDFTINGLM+DPY ++YDY+GG+EDIRKAKV+T
Sbjct: 91 QLTSAAIEKPMNCEEIDFVRWKNCLQRDFTINGLMYDPYNNVVYDYLGGMEDIRKAKVRT 150
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
V+PA TSFQED ARI RAIR AARL F FS++ A +K+LS + L++ RL MEMNY+L
Sbjct: 151 VVPACTSFQEDFARIFRAIRFAARLQFHFSKDIAGSIKNLSCLVFTLNKARLQMEMNYLL 210
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
+YGSAEASLRLLWK+GLLE+LLPIQAAY +++GFRR DK SN+LLSLFS+LDKLLAP+RP
Sbjct: 211 SYGSAEASLRLLWKYGLLEILLPIQAAYFIRNGFRRSDKGSNMLLSLFSSLDKLLAPNRP 270
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CHSSLW+A+LA H ALSDQPR PLVVA F LAV+NGG+M+EA+ IA+ IN++H+ +FCEL
Sbjct: 271 CHSSLWVAVLALHVALSDQPRSPLVVAAFGLAVHNGGNMMEAISIAKSINRAHNANFCEL 330
Query: 300 LEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
LEP +L+ +AL EVMD K AL KMTDE+FVS A+ Y +AP SDL
Sbjct: 331 LEPENLEVQALIDEVMDLTTFVKAALHKMTDEHFVSLALETYPQAPASDL 380
>gi|449501476|ref|XP_004161378.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus]
Length = 571
Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust.
Identities = 237/350 (67%), Positives = 289/350 (82%), Gaps = 1/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LNR+PKDFDIITSA+LKEV R+F CEIVG+RFPICHVH + TIVEVSSFSTS R F R
Sbjct: 161 ILNRVPKDFDIITSAQLKEVSRIFLWCEIVGRRFPICHVHIDGTIVEVSSFSTSNRPFDR 220
Query: 61 DF-KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
E+P+ C+E DF+RW+NCLQRDFTINGLM+DPY ++YDY+GG+EDIRKAKV+T
Sbjct: 221 QLTSAAIEKPMNCEEIDFVRWKNCLQRDFTINGLMYDPYNNVVYDYLGGMEDIRKAKVRT 280
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
V+PA TSFQED ARI RAIR AARL F FS++ A +K+LS + L++ RL MEMNY+L
Sbjct: 281 VVPACTSFQEDFARIFRAIRFAARLQFHFSKDIAGSIKNLSCLVFTLNKARLQMEMNYLL 340
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
+YGSAEASLRLLWK+GLLE+LLPIQAAY +++GFRR DK SN+LLSLFS+LDKLLAP+RP
Sbjct: 341 SYGSAEASLRLLWKYGLLEILLPIQAAYFIRNGFRRSDKGSNMLLSLFSSLDKLLAPNRP 400
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CHSSLW+A+LA H ALSDQPR PLVVA F LAV+NGG+M+EA+ IA+ IN++H+ +FCEL
Sbjct: 401 CHSSLWVAVLALHVALSDQPRSPLVVAAFGLAVHNGGNMMEAISIAKSINRAHNANFCEL 460
Query: 300 LEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
LEP +L+ +AL EVMD K AL KMTDE+FVS A+ Y +AP SDL
Sbjct: 461 LEPENLEVQALIDEVMDLTTFVKAALHKMTDEHFVSLALETYPQAPASDL 510
>gi|15229038|ref|NP_190452.1| polynucleotide adenylyltransferase domain and RNA recognition
motif-containing protein [Arabidopsis thaliana]
gi|7576221|emb|CAB87911.1| putative protein [Arabidopsis thaliana]
gi|332644940|gb|AEE78461.1| polynucleotide adenylyltransferase domain and RNA recognition
motif-containing protein [Arabidopsis thaliana]
Length = 881
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 242/349 (69%), Positives = 289/349 (82%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI+TSAEL+EVVR FS+CEI+GK+FPICHVH N ++EVSSFSTS + R
Sbjct: 105 ILKRTPKDFDILTSAELREVVRSFSRCEIIGKKFPICHVHIGNDMIEVSSFSTSAQNSLR 164
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
+ + + G ++D IR+ NCLQRDFTINGLMFDPYAK+IYDY+GGIEDI+KAKV+TV
Sbjct: 165 NTRTGSGKSNGSYDEDSIRFNNCLQRDFTINGLMFDPYAKVIYDYLGGIEDIKKAKVRTV 224
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
A TSFQED ARILR RIAARLGF S+ETAHF+K+LS + +L RGR+L+EMNYMLA
Sbjct: 225 FHAGTSFQEDSARILRGTRIAARLGFTISKETAHFLKNLSFLVQRLHRGRILLEMNYMLA 284
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLRLLWKFG+LE+LLPIQAAYLV+ GF+RRDKRSNLLLSLF NLDKLLAPD+PC
Sbjct: 285 YGSAEASLRLLWKFGILEILLPIQAAYLVRTGFKRRDKRSNLLLSLFGNLDKLLAPDKPC 344
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
HSSLW+ ILA HKAL+DQPR P VVA FSLAV+NGGD+LEAVK R++ K H+ SF ELL
Sbjct: 345 HSSLWLTILALHKALADQPRYPSVVAAFSLAVHNGGDVLEAVKNTRKVTKPHNRSFFELL 404
Query: 301 EPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
EP ++D + L EVMDF S K AL +MTD F+S+AMA Y +AP+SD+
Sbjct: 405 EPEEMDSQTLLDEVMDFDSSIKEALGQMTDGRFISKAMAAYPQAPYSDM 453
>gi|224075475|ref|XP_002304649.1| predicted protein [Populus trichocarpa]
gi|222842081|gb|EEE79628.1| predicted protein [Populus trichocarpa]
Length = 525
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/350 (66%), Positives = 284/350 (81%), Gaps = 1/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L RIPKDFD+ITSAELK+V + F +CEIVGKRFPICHVH ++ IVEVSSFSTS +
Sbjct: 100 ILKRIPKDFDVITSAELKQVRKAFHRCEIVGKRFPICHVHVDDAIVEVSSFSTSQLKSDG 159
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
F +P GC E+DFIRWRNCLQRDFTINGLM DPYA I+YDY+GGI DI+K KV+TV
Sbjct: 160 KFNGNVRKPRGCSERDFIRWRNCLQRDFTINGLMLDPYANIVYDYMGGITDIKKTKVRTV 219
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
IPA+ SF ED RILRAIRIAARL F F+R+ A +K LS S+L+LD+GR+L+E+NYM A
Sbjct: 220 IPANLSFVEDSGRILRAIRIAARLHFGFTRDLALSLKELSHSVLRLDKGRILLELNYMFA 279
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLRL+W+FGLLE+LLPIQA+Y V GFRRRD+RSN+LLSLFSNLD+L+APDRPC
Sbjct: 280 YGSAEASLRLMWRFGLLEILLPIQASYFVSQGFRRRDERSNMLLSLFSNLDRLVAPDRPC 339
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
HSSLW+ I AFHKAL DQP+DPLVV FSLAV++GG +LE+V+IARRI++ + SF ELL
Sbjct: 340 HSSLWLGIFAFHKALVDQPQDPLVVTAFSLAVHSGGSLLESVEIARRISQPYQSSFPELL 399
Query: 301 EPRDLDF-EALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
E ++ D AL H+ ++FA K AL MTD +VS+AMA Y +AP SDL
Sbjct: 400 EAQNPDSNNALVHKTINFAALVKTALCNMTDGCYVSKAMAKYPKAPSSDL 449
>gi|449484884|ref|XP_004157007.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus]
Length = 532
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 226/351 (64%), Positives = 281/351 (80%), Gaps = 6/351 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L RIPKDFD+ITSA+LKEV R+FSQC +VGKRFPICHV+ TIVEVSSFSTS R
Sbjct: 110 ILKRIPKDFDVITSAQLKEVRRIFSQCLVVGKRFPICHVNVLGTIVEVSSFSTSRSR--N 167
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
F +P E D+IRW NC QRDFTIN LM+DPY K++YDY+G +EDIRK+KV+TV
Sbjct: 168 GFNNYINKPSNLSEPDYIRWENCSQRDFTINSLMYDPYKKVVYDYLGAMEDIRKSKVRTV 227
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
PA+ SF EDCARILR +R+AARL FRFS++ A +K LS S+LKLD+GRLLMEMNYMLA
Sbjct: 228 KPANLSFTEDCARILRGVRLAARLEFRFSKDIALSIKELSCSVLKLDKGRLLMEMNYMLA 287
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
+GSAEASLRLLW+FGLLE+LLPIQA+Y V GFRRRD RSN+LL LFSNLDK +AP+RPC
Sbjct: 288 FGSAEASLRLLWRFGLLEILLPIQASYFVSQGFRRRDARSNMLLILFSNLDKFVAPNRPC 347
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
HSSLWIA+LAFHKAL DQP+DP+VVA FSLA+++GG + EAV+IA+ I++ H SF E++
Sbjct: 348 HSSLWIALLAFHKALVDQPQDPVVVAAFSLAIHSGGSLYEAVEIAQNISQPH-VSFHEIV 406
Query: 301 EP--RDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
E ++ D+ +L +V+D A+S L KMT+ +VS+AM Y +AP+SDL
Sbjct: 407 ESNHKESDY-SLVEQVIDLADSVNSVLWKMTNSQYVSRAMIKYPQAPWSDL 456
>gi|449468890|ref|XP_004152154.1| PREDICTED: poly(A) polymerase-like [Cucumis sativus]
Length = 539
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/351 (64%), Positives = 281/351 (80%), Gaps = 6/351 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L RIPKDFD+ITSA+LKEV R+FSQC +VGKRFPICHV+ TIVEVSSFSTS R
Sbjct: 117 ILKRIPKDFDVITSAQLKEVRRIFSQCLVVGKRFPICHVNVLGTIVEVSSFSTSRSR--N 174
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
F +P E D+IRW NC QRDFTIN LM+DPY K++YDY+G +EDIRK+KV+TV
Sbjct: 175 GFNNYINKPSNLSEPDYIRWENCSQRDFTINSLMYDPYKKVVYDYLGAMEDIRKSKVRTV 234
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
PA+ SF EDCARILR +R+AARL FRFS++ A +K LS S+LKLD+GRLLMEMNYMLA
Sbjct: 235 KPANLSFTEDCARILRGVRLAARLEFRFSKDIALSIKELSCSVLKLDKGRLLMEMNYMLA 294
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
+GSAEASLRLLW+FGLLE+LLPIQA+Y V GFRRRD RSN+LL LFSNLDK +AP+RPC
Sbjct: 295 FGSAEASLRLLWRFGLLEILLPIQASYFVSQGFRRRDARSNMLLILFSNLDKFVAPNRPC 354
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
HSSLWIA+LAFHKAL DQP+DP+VVA FSLA+++GG + EAV+IA+ I++ H SF E++
Sbjct: 355 HSSLWIALLAFHKALVDQPQDPVVVAAFSLAIHSGGSLYEAVEIAQNISQPH-VSFHEIV 413
Query: 301 EP--RDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
E ++ D+ +L +V+D A+S L KMT+ +VS+AM Y +AP+SDL
Sbjct: 414 ESNHKESDY-SLVEQVIDLADSVNSVLWKMTNSQYVSRAMIKYPQAPWSDL 463
>gi|8809691|dbj|BAA97232.1| unnamed protein product [Arabidopsis thaliana]
Length = 499
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 229/351 (65%), Positives = 278/351 (79%), Gaps = 30/351 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI+TSAEL+EV SSFSTS + SR
Sbjct: 108 ILKRTPKDFDILTSAELREV----------------------------SSFSTSAQNSSR 139
Query: 61 DFKYEFERPIGCD-EKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + E + G D ++D IR NCLQRDFTINGLMFDPYAK++YDY+GG+EDIRKAKV+T
Sbjct: 140 NTRTECKESSGSDGDEDCIRLNNCLQRDFTINGLMFDPYAKVVYDYLGGMEDIRKAKVRT 199
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
VI A TSF +DCARILRAIRIAARLGFR S+ETAHF+K+LS + +LD+GR+LMEMNYML
Sbjct: 200 VIHAGTSFHQDCARILRAIRIAARLGFRMSKETAHFIKNLSLLVQRLDKGRILMEMNYML 259
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGSAEASLRLLWKFG+LE+LLPIQAAYL + GFRRRDKR+N+LLSLF+NLDKLLAPDRP
Sbjct: 260 AYGSAEASLRLLWKFGILEILLPIQAAYLARSGFRRRDKRTNMLLSLFANLDKLLAPDRP 319
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CHSSLWIAILAFHKAL+D+PR P+VVA FSLAV+N GD+LEAV+I ++I + HD+SF EL
Sbjct: 320 CHSSLWIAILAFHKALADKPRSPIVVAAFSLAVHNCGDILEAVEITKKITRPHDKSFFEL 379
Query: 300 LEP-RDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
+EP +LDF+ L EVMD S + AL++MTD YF+S+AM+ Y +AP+SDL
Sbjct: 380 VEPEENLDFQTLLDEVMDLDASIEDALNQMTDAYFISKAMSAYPQAPYSDL 430
>gi|115458124|ref|NP_001052662.1| Os04g0395900 [Oryza sativa Japonica Group]
gi|21742315|emb|CAD40772.1| OSJNBb0039F02.3 [Oryza sativa Japonica Group]
gi|113564233|dbj|BAF14576.1| Os04g0395900 [Oryza sativa Japonica Group]
gi|215767631|dbj|BAG99859.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 542
Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/350 (62%), Positives = 272/350 (77%), Gaps = 2/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
++ + PKDFDIIT+A+L++V FS IVG+RFPICHV+ N+IVEVSSF+T R +
Sbjct: 121 IMKKTPKDFDIITTADLRQVKDTFSGSAVIVGRRFPICHVYENNSIVEVSSFNTYARGST 180
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ Y + P C + D+IRW+NC RDFTINGLMF+PYA+ IYDY GGIEDI+KAKV+T
Sbjct: 181 SNQIYTSKSP-HCSKNDYIRWKNCQGRDFTINGLMFNPYAEKIYDYFGGIEDIKKAKVRT 239
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
VIPA TSFQEDCARILRAIRIAARLGF F +ETA++V+ L+ S+ +LD+GR+LME+NYML
Sbjct: 240 VIPAGTSFQEDCARILRAIRIAARLGFNFPKETAYYVRTLACSVARLDKGRILMEINYML 299
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGSAEASLRLLW+FGLLE LLP QAAY F+R+DK +N+LL LFS LD LAP+RP
Sbjct: 300 AYGSAEASLRLLWRFGLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRP 359
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CH+SLWI+ILA H+AL QPRDPLVVA F+LA+Y GGDM A+ I + IN+ H+ F EL
Sbjct: 360 CHNSLWISILALHEALVRQPRDPLVVATFALALYLGGDMSLALDIGKSINRQHNTGFSEL 419
Query: 300 LEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
LEP+ D + L EV A S + AL++MTDEYFV+ AMA +AP SDL
Sbjct: 420 LEPQVWDDKHLVGEVQSLAVSMRRALTEMTDEYFVANAMAKIPQAPSSDL 469
>gi|125548115|gb|EAY93937.1| hypothetical protein OsI_15711 [Oryza sativa Indica Group]
Length = 542
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/350 (62%), Positives = 272/350 (77%), Gaps = 2/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
++ + PKDFDIIT+A+L++V FS IVG+RFPICHV+ N+IVEVSSF+T R +
Sbjct: 121 IMKKTPKDFDIITTADLRQVKDTFSGSAVIVGRRFPICHVYENNSIVEVSSFNTYARGST 180
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ Y + P C + D+IRW+NC RDFTINGLMF+PYA+ IYDY GGIEDI+KAKV+T
Sbjct: 181 SNQIYTSKSP-HCSKNDYIRWKNCQGRDFTINGLMFNPYAEKIYDYFGGIEDIKKAKVRT 239
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
VIPA TSFQEDCARILRAIRIAARLGF F +ETA++V+ L+ S+ +LD+GR+LME+NYML
Sbjct: 240 VIPAGTSFQEDCARILRAIRIAARLGFNFPKETAYYVRTLACSVARLDKGRILMEINYML 299
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGSAEASLRLLW+FGLLE LLP QAAY F+R+DK +N+LL LFS LD LAP+RP
Sbjct: 300 AYGSAEASLRLLWRFGLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRP 359
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CH+SLWI+ILA H+AL QPRDPLVVA F+LA+Y GGDM A+ I + IN+ H+ F EL
Sbjct: 360 CHNSLWISILALHEALVRQPRDPLVVATFALALYLGGDMSLALDIGKSINRQHNTGFSEL 419
Query: 300 LEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
LEP+ D + L EV A S + AL++MTDEYFV+ AMA +AP SDL
Sbjct: 420 LEPQVWDDKHLVGEVQSLAVSMRRALTEMTDEYFVANAMAKIPQAPSSDL 469
>gi|145324048|ref|NP_001077613.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
gi|332192791|gb|AEE30912.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
Length = 478
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 215/352 (61%), Positives = 270/352 (76%), Gaps = 4/352 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+RIPKDFD+IT+AELKEV +VF C+IVG+RFPICHV+ ++ I+EVSSFSTS R
Sbjct: 63 ILDRIPKDFDVITTAELKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKA 122
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
K F RP GCDE+D+IRW+NCLQRDFT+NGLMFDP ++YDYIGG+ED+R +KV+TV
Sbjct: 123 PNK-SFRRPAGCDERDYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTV 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
A+ SF ED ARILRAIRIAARLGF +++ A VK LS S+L+LD R+ ME+NYMLA
Sbjct: 182 SAANLSFVEDTARILRAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLA 241
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLRLLW+FGL+E+LLPIQA+YLV GFRRRD RSN+LLSLF NLD+L+APDRPC
Sbjct: 242 YGSAEASLRLLWRFGLMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPC 301
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
LWI ILAFHKAL DQPRDP VVA F LA+Y+ + EA+ IAR +K H+ F EL
Sbjct: 302 SEFLWIGILAFHKALVDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELS 361
Query: 301 EPRD--LDFEA-LKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
P D E+ + +V+ AES + A K+ + +++ AM+ Y +AP SD+
Sbjct: 362 SPEKDTADSESKISQQVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDM 413
>gi|242075570|ref|XP_002447721.1| hypothetical protein SORBIDRAFT_06g014480 [Sorghum bicolor]
gi|241938904|gb|EES12049.1| hypothetical protein SORBIDRAFT_06g014480 [Sorghum bicolor]
Length = 542
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/350 (62%), Positives = 268/350 (76%), Gaps = 2/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCE-IVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
++ + PKDFDIIT+A+L++V FS IVG+RFPICHVH N+IVEVSSF TS R S
Sbjct: 121 IMKKTPKDFDIITTADLRQVKDTFSGSAVIVGRRFPICHVHENNSIVEVSSFYTSARGSS 180
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
Y + C + DF+RW+NC RDFTINGLMF+PY++ IYDY+GGIEDI+KAKV+T
Sbjct: 181 GSQIYN-SKSQNCSKNDFVRWKNCQGRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRT 239
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
VIPA TSFQEDCARILRAIRIAARLGF F +ETA++V+ L+ S+ +LD+GR+L+EMNYML
Sbjct: 240 VIPAGTSFQEDCARILRAIRIAARLGFSFPKETAYYVRTLAYSVARLDKGRILLEMNYML 299
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGSAEASLRLLW+FGLLE LLP QAAY F+R+DK +N+LL LFS LD LAP+RP
Sbjct: 300 AYGSAEASLRLLWRFGLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRP 359
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CH+SLWI++LAFH+AL+ +P DPLVVA F+LA Y GGDM AV I + IN+ HD F EL
Sbjct: 360 CHNSLWISLLAFHEALARKPCDPLVVATFALAFYLGGDMSLAVDIGKSINRQHDTGFREL 419
Query: 300 LEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
LEP+ + L EV FA K AL++MTDEY V AMA +AP SDL
Sbjct: 420 LEPKVWTDKHLAGEVQSFAALMKRALTEMTDEYHVGNAMAKIPQAPSSDL 469
>gi|357163185|ref|XP_003579651.1| PREDICTED: uncharacterized protein LOC100821667 [Brachypodium
distachyon]
Length = 541
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/350 (62%), Positives = 272/350 (77%), Gaps = 2/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCE-IVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
++ +IPKDFDIIT+A+L++V F+ IVG+RFPI HVH N+IVEVSSF+T R S
Sbjct: 120 IMKKIPKDFDIITTADLRQVKDTFTGSAVIVGRRFPIVHVHDNNSIVEVSSFNTYARGSS 179
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + + P C + D+IRW+NC RDFTINGLMF+PY++ IYDY+GGIEDI+KAKV+T
Sbjct: 180 GNQAHTSKSP-HCSKNDYIRWKNCQGRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRT 238
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
VIPA TSF EDCARILRAIRIAARLGF F +ETA++V+ L+ S+ +LD+GRLLME+NYML
Sbjct: 239 VIPAGTSFHEDCARILRAIRIAARLGFSFPKETAYYVRTLACSVARLDKGRLLMEVNYML 298
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGSAEASLRLLW+FGLLE LLP QAAY F+R+DK +N+LL LFS LD LAP+RP
Sbjct: 299 AYGSAEASLRLLWRFGLLEHLLPFQAAYFSSTHFKRKDKGTNMLLILFSKLDSFLAPNRP 358
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CH+SLWI+ILAFH+AL QPRDPLVVA F+LA+Y GGD+ AV I + IN+ HD F EL
Sbjct: 359 CHNSLWISILAFHEALVRQPRDPLVVATFALAMYLGGDLSLAVDIGQSINRRHDAGFSEL 418
Query: 300 LEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
LEP+ + L EV A S + AL++MTDEY+V+ AMA +AP SDL
Sbjct: 419 LEPQVWSDKHLVAEVQGLATSMRRALTEMTDEYYVANAMAKIPQAPSSDL 468
>gi|42562367|ref|NP_174130.2| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
gi|332192789|gb|AEE30910.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
Length = 541
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/352 (61%), Positives = 270/352 (76%), Gaps = 4/352 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+RIPKDFD+IT+AELKEV +VF C+IVG+RFPICHV+ ++ I+EVSSFSTS R
Sbjct: 126 ILDRIPKDFDVITTAELKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKA 185
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
K F RP GCDE+D+IRW+NCLQRDFT+NGLMFDP ++YDYIGG+ED+R +KV+TV
Sbjct: 186 PNK-SFRRPAGCDERDYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTV 244
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
A+ SF ED ARILRAIRIAARLGF +++ A VK LS S+L+LD R+ ME+NYMLA
Sbjct: 245 SAANLSFVEDTARILRAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLA 304
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLRLLW+FGL+E+LLPIQA+YLV GFRRRD RSN+LLSLF NLD+L+APDRPC
Sbjct: 305 YGSAEASLRLLWRFGLMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPC 364
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
LWI ILAFHKAL DQPRDP VVA F LA+Y+ + EA+ IAR +K H+ F EL
Sbjct: 365 SEFLWIGILAFHKALVDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELS 424
Query: 301 EPRD--LDFEA-LKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
P D E+ + +V+ AES + A K+ + +++ AM+ Y +AP SD+
Sbjct: 425 SPEKDTADSESKISQQVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDM 476
>gi|42571667|ref|NP_973924.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
gi|194272240|gb|ACF37205.1| At1g28090 [Arabidopsis thaliana]
gi|222424128|dbj|BAH20023.1| AT1G28090 [Arabidopsis thaliana]
gi|332192790|gb|AEE30911.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Arabidopsis
thaliana]
Length = 505
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/352 (61%), Positives = 270/352 (76%), Gaps = 4/352 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+RIPKDFD+IT+AELKEV +VF C+IVG+RFPICHV+ ++ I+EVSSFSTS R
Sbjct: 90 ILDRIPKDFDVITTAELKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKA 149
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
K F RP GCDE+D+IRW+NCLQRDFT+NGLMFDP ++YDYIGG+ED+R +KV+TV
Sbjct: 150 PNK-SFRRPAGCDERDYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTV 208
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
A+ SF ED ARILRAIRIAARLGF +++ A VK LS S+L+LD R+ ME+NYMLA
Sbjct: 209 SAANLSFVEDTARILRAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLA 268
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLRLLW+FGL+E+LLPIQA+YLV GFRRRD RSN+LLSLF NLD+L+APDRPC
Sbjct: 269 YGSAEASLRLLWRFGLMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPC 328
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
LWI ILAFHKAL DQPRDP VVA F LA+Y+ + EA+ IAR +K H+ F EL
Sbjct: 329 SEFLWIGILAFHKALVDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELS 388
Query: 301 EPRD--LDFEA-LKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
P D E+ + +V+ AES + A K+ + +++ AM+ Y +AP SD+
Sbjct: 389 SPEKDTADSESKISQQVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDM 440
>gi|293332685|ref|NP_001168693.1| hypothetical protein [Zea mays]
gi|223950275|gb|ACN29221.1| unknown [Zea mays]
gi|414587498|tpg|DAA38069.1| TPA: hypothetical protein ZEAMMB73_877949 [Zea mays]
Length = 535
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/350 (61%), Positives = 268/350 (76%), Gaps = 2/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVF-SQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
++ + PKDFDIIT+A+L++V F IVG+RFPICHVH N+IVEVSSF+T R S
Sbjct: 114 IMKKTPKDFDIITTADLRQVKDTFLGSAVIVGRRFPICHVHENNSIVEVSSFNTCARGSS 173
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
Y + C + DF+RW+NC +RDFTINGLMF+PY++ IYDY+GGIEDI+KAKV+T
Sbjct: 174 GSQIYN-SKSQNCSKNDFVRWKNCQRRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRT 232
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
VIPA TSFQEDCARILRAIRIAARLGF F +ETA++V+ L+ S+ +LD+ R+LMEMNYML
Sbjct: 233 VIPAGTSFQEDCARILRAIRIAARLGFSFPKETAYYVRTLACSVARLDKARILMEMNYML 292
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGSAEASLRLLW+FGLLE LLP QAAY F+R+DK +N+LL LFS LD LAP+RP
Sbjct: 293 AYGSAEASLRLLWRFGLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRP 352
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CH+SLWI++LAFH+AL+ +P DPL+VA F+LA Y GGDM AV I + IN+ HD F EL
Sbjct: 353 CHNSLWISLLAFHEALARKPCDPLIVATFALAFYLGGDMSLAVDIGKSINRQHDTGFREL 412
Query: 300 LEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
LEP+ + L EV FA K AL++MTDEY V+ AMA +AP SDL
Sbjct: 413 LEPKVWTDKHLAGEVQSFAALMKQALTEMTDEYHVANAMAKIPQAPSSDL 462
>gi|414587499|tpg|DAA38070.1| TPA: hypothetical protein ZEAMMB73_877949 [Zea mays]
Length = 471
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/350 (61%), Positives = 268/350 (76%), Gaps = 2/350 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVF-SQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
++ + PKDFDIIT+A+L++V F IVG+RFPICHVH N+IVEVSSF+T R S
Sbjct: 50 IMKKTPKDFDIITTADLRQVKDTFLGSAVIVGRRFPICHVHENNSIVEVSSFNTCARGSS 109
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
Y + C + DF+RW+NC +RDFTINGLMF+PY++ IYDY+GGIEDI+KAKV+T
Sbjct: 110 GSQIYN-SKSQNCSKNDFVRWKNCQRRDFTINGLMFNPYSEKIYDYLGGIEDIKKAKVRT 168
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
VIPA TSFQEDCARILRAIRIAARLGF F +ETA++V+ L+ S+ +LD+ R+LMEMNYML
Sbjct: 169 VIPAGTSFQEDCARILRAIRIAARLGFSFPKETAYYVRTLACSVARLDKARILMEMNYML 228
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYGSAEASLRLLW+FGLLE LLP QAAY F+R+DK +N+LL LFS LD LAP+RP
Sbjct: 229 AYGSAEASLRLLWRFGLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRP 288
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
CH+SLWI++LAFH+AL+ +P DPL+VA F+LA Y GGDM AV I + IN+ HD F EL
Sbjct: 289 CHNSLWISLLAFHEALARKPCDPLIVATFALAFYLGGDMSLAVDIGKSINRQHDTGFREL 348
Query: 300 LEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
LEP+ + L EV FA K AL++MTDEY V+ AMA +AP SDL
Sbjct: 349 LEPKVWTDKHLAGEVQSFAALMKQALTEMTDEYHVANAMAKIPQAPSSDL 398
>gi|297845758|ref|XP_002890760.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297336602|gb|EFH67019.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 534
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 215/352 (61%), Positives = 269/352 (76%), Gaps = 4/352 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+RIPKDFD+IT+AELKEV +VF +C+IVG+RFPICHV+ ++ I+EVSSFSTS R
Sbjct: 119 ILDRIPKDFDVITTAELKEVRKVFPRCQIVGRRFPICHVYVDDIIIEVSSFSTSARTGKA 178
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
K +P GCDE+D+IRW+NCLQRDFT+NGLMFD ++YDYIGG+EDIR +KV+TV
Sbjct: 179 PSK-NLRKPAGCDERDYIRWKNCLQRDFTVNGLMFDLSENVVYDYIGGVEDIRNSKVRTV 237
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
A SF ED ARILRAIRIAARLGF +++ A VK LS S+L+LD R+ ME+NYMLA
Sbjct: 238 SAAKLSFVEDTARILRAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLA 297
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLRLLW+FGL+E+LLPIQA+YLV GFRRRD RSN+LLSLF NLD+L+APDRPC
Sbjct: 298 YGSAEASLRLLWRFGLMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPC 357
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
+ LWI ILAFHKAL DQPRDP VVA F LA+Y+ + EA+ IAR +K H+ F EL
Sbjct: 358 NEFLWIGILAFHKALVDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELS 417
Query: 301 --EPRDLDFEA-LKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
E D E+ L +V+ AES + A K+ D +++ AM+ Y +AP SD+
Sbjct: 418 GHEKDSADSESKLSQQVIKLAESIRSAARKLNDRDYIANAMSKYPQAPGSDM 469
>gi|12322982|gb|AAG51472.1|AC069471_3 hypothetical protein [Arabidopsis thaliana]
Length = 462
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/352 (59%), Positives = 265/352 (75%), Gaps = 10/352 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+RIPKDFD+IT+AELKEV +VF C+IVG+RFPICHV+ ++ I+EVS R +
Sbjct: 90 ILDRIPKDFDVITTAELKEVRKVFPGCQIVGRRFPICHVYVDDIIIEVS-------RTGK 142
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
F RP GCDE+D+IRW+NCLQRDFT+NGLMFDP ++YDYIGG+ED+R +KV+TV
Sbjct: 143 APNKSFRRPAGCDERDYIRWKNCLQRDFTVNGLMFDPSENVVYDYIGGVEDLRNSKVRTV 202
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
A+ SF ED ARILRAIRIAARLGF +++ A VK LS S+L+LD R+ ME+NYMLA
Sbjct: 203 SAANLSFVEDTARILRAIRIAARLGFSLTKDVAISVKELSSSLLRLDPSRIRMEINYMLA 262
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
YGSAEASLRLLW+FGL+E+LLPIQA+YLV GFRRRD RSN+LLSLF NLD+L+APDRPC
Sbjct: 263 YGSAEASLRLLWRFGLMEILLPIQASYLVSQGFRRRDGRSNMLLSLFRNLDRLVAPDRPC 322
Query: 241 HSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELL 300
LWI ILAFHKAL DQPRDP VVA F LA+Y+ + EA+ IAR +K H+ F EL
Sbjct: 323 SEFLWIGILAFHKALVDQPRDPTVVASFCLAIYSEVSLSEAIAIARSNSKQHNSHFQELS 382
Query: 301 EPRD--LDFEA-LKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
P D E+ + +V+ AES + A K+ + +++ AM+ Y +AP SD+
Sbjct: 383 SPEKDTADSESKISQQVIKLAESIRSAARKLNNRDYIANAMSKYPQAPGSDM 434
>gi|222628784|gb|EEE60916.1| hypothetical protein OsJ_14629 [Oryza sativa Japonica Group]
Length = 555
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/340 (62%), Positives = 260/340 (76%), Gaps = 2/340 (0%)
Query: 11 IITSAELKEVVRVFSQCE-IVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERP 69
++T L EV FS IVG+RFPICHV+ N+IVEVSSF+T R + + Y + P
Sbjct: 144 VLTLIFLAEVKDTFSGSAVIVGRRFPICHVYENNSIVEVSSFNTYARGSTSNQIYTSKSP 203
Query: 70 IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQE 129
C + D+IRW+NC RDFTINGLMF+PYA+ IYDY GGIEDI+KAKV+TVIPA TSFQE
Sbjct: 204 -HCSKNDYIRWKNCQGRDFTINGLMFNPYAEKIYDYFGGIEDIKKAKVRTVIPAGTSFQE 262
Query: 130 DCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLR 189
DCARILRAIRIAARLGF F +ETA++V+ L+ S+ +LD+GR+LME+NYMLAYGSAEASLR
Sbjct: 263 DCARILRAIRIAARLGFNFPKETAYYVRTLACSVARLDKGRILMEINYMLAYGSAEASLR 322
Query: 190 LLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAIL 249
LLW+FGLLE LLP QAAY F+R+DK +N+LL LFS LD LAP+RPCH+SLWI+IL
Sbjct: 323 LLWRFGLLEHLLPFQAAYFSSTRFKRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISIL 382
Query: 250 AFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEA 309
A H+AL QPRDPLVVA F+LA+Y GGDM A+ I + IN+ H+ F ELLEP+ D +
Sbjct: 383 ALHEALVRQPRDPLVVATFALALYLGGDMSLALDIGKSINRQHNTGFSELLEPQVWDDKH 442
Query: 310 LKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
L EV A S + AL++MTDEYFV+ AMA +AP SDL
Sbjct: 443 LVGEVQSLAVSMRRALTEMTDEYFVANAMAKIPQAPSSDL 482
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/103 (66%), Positives = 82/103 (79%), Gaps = 1/103 (0%)
Query: 29 IVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDF 88
IVG+RFPICHV+ N+IVEVSSF+T R + + Y + P C + D+IRW+NC RDF
Sbjct: 37 IVGRRFPICHVYENNSIVEVSSFNTYARGSTSNQIYTSKSP-HCSKNDYIRWKNCQGRDF 95
Query: 89 TINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDC 131
TINGLMF+PYA+ IYDY GGIEDI+KAKV+TVIPA TSFQEDC
Sbjct: 96 TINGLMFNPYAEKIYDYFGGIEDIKKAKVRTVIPAGTSFQEDC 138
>gi|326518838|dbj|BAJ92580.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 340
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/321 (63%), Positives = 252/321 (78%), Gaps = 1/321 (0%)
Query: 29 IVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDF 88
IVG+RFPI HVH N+IVEVSSF+T R S + + P C + D++RW+NC RDF
Sbjct: 11 IVGRRFPIVHVHDNNSIVEVSSFNTYVRGSSGNQMPASKSP-HCSKNDYLRWKNCQGRDF 69
Query: 89 TINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRF 148
TINGLMF+PY++ IYDY+GGIEDI+KAKV+TVIPA+TSF EDCARILRAIRIAARLGF F
Sbjct: 70 TINGLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAATSFHEDCARILRAIRIAARLGFSF 129
Query: 149 SRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
+ETA++V++L+ S+ +LD+GRLLME+NYMLAYGSAEASLRLLW+FGLLE LLP QAAY
Sbjct: 130 PKETAYYVRNLACSVARLDKGRLLMEVNYMLAYGSAEASLRLLWRFGLLEHLLPFQAAYF 189
Query: 209 VKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVF 268
F+R+D +N+LL LFS LD LAP+RPCH+SLWI+ILAFH+AL +PRDPLVVA F
Sbjct: 190 SSTLFKRKDNGTNMLLVLFSKLDSFLAPNRPCHNSLWISILAFHEALVRKPRDPLVVATF 249
Query: 269 SLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVMDFAESSKGALSKM 328
+LAVY GGD+ AV I + IN+ HD F ELLEPR + L EV D A S + AL++M
Sbjct: 250 ALAVYLGGDLPLAVDIGQSINRQHDAGFSELLEPRVRGKKGLLAEVKDLAISMRQALTEM 309
Query: 329 TDEYFVSQAMAGYSRAPFSDL 349
TDEY+V+ AMA +AP SDL
Sbjct: 310 TDEYYVANAMAKIPQAPSSDL 330
>gi|326509581|dbj|BAJ87006.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 391
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/318 (63%), Positives = 249/318 (78%), Gaps = 1/318 (0%)
Query: 32 KRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTIN 91
+RFPI HVH N+IVEVSSF+T R S + + P C + D++RW+NC RDFTIN
Sbjct: 1 RRFPIVHVHDNNSIVEVSSFNTYVRGSSGNQMPASKSP-HCSKNDYLRWKNCQGRDFTIN 59
Query: 92 GLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE 151
GLMF+PY++ IYDY+GGIEDI+KAKV+TVIPA+TSF EDCARILRAIRIAARLGF F +E
Sbjct: 60 GLMFNPYSEKIYDYLGGIEDIKKAKVRTVIPAATSFHEDCARILRAIRIAARLGFSFPKE 119
Query: 152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
TA++V++L+ S+ +LD+GRLLME+NYMLAYGSAEASLRLLW+FGLLE LLP QAAY
Sbjct: 120 TAYYVRNLACSVARLDKGRLLMEVNYMLAYGSAEASLRLLWRFGLLEHLLPFQAAYFSST 179
Query: 212 GFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLA 271
F+R+D +N+LL LFS LD LAP+RPCH+SLWI+ILAFH+AL +PRDPLVVA F+LA
Sbjct: 180 LFKRKDNGTNMLLVLFSKLDSFLAPNRPCHNSLWISILAFHEALVRKPRDPLVVATFALA 239
Query: 272 VYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDE 331
VY GGD+ AV I + IN+ HD F ELLEPR + L EV D A S + AL++MTDE
Sbjct: 240 VYLGGDLPLAVDIGQSINRQHDAGFSELLEPRVRGKKGLLAEVKDLAISMRQALTEMTDE 299
Query: 332 YFVSQAMAGYSRAPFSDL 349
Y+V+ AMA +AP SDL
Sbjct: 300 YYVANAMAKIPQAPSSDL 317
>gi|414587500|tpg|DAA38071.1| TPA: hypothetical protein ZEAMMB73_877949 [Zea mays]
Length = 329
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 166/256 (64%), Positives = 203/256 (79%)
Query: 94 MFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETA 153
MF+PY++ IYDY+GGIEDI+KAKV+TVIPA TSFQEDCARILRAIRIAARLGF F +ETA
Sbjct: 1 MFNPYSEKIYDYLGGIEDIKKAKVRTVIPAGTSFQEDCARILRAIRIAARLGFSFPKETA 60
Query: 154 HFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGF 213
++V+ L+ S+ +LD+ R+LMEMNYMLAYGSAEASLRLLW+FGLLE LLP QAAY F
Sbjct: 61 YYVRTLACSVARLDKARILMEMNYMLAYGSAEASLRLLWRFGLLEHLLPFQAAYFSSTRF 120
Query: 214 RRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+R+DK +N+LL LFS LD LAP+RPCH+SLWI++LAFH+AL+ +P DPL+VA F+LA Y
Sbjct: 121 KRKDKGTNMLLVLFSKLDNFLAPNRPCHNSLWISLLAFHEALARKPCDPLIVATFALAFY 180
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYF 333
GGDM AV I + IN+ HD F ELLEP+ + L EV FA K AL++MTDEY
Sbjct: 181 LGGDMSLAVDIGKSINRQHDTGFRELLEPKVWTDKHLAGEVQSFAALMKQALTEMTDEYH 240
Query: 334 VSQAMAGYSRAPFSDL 349
V+ AMA +AP SDL
Sbjct: 241 VANAMAKIPQAPSSDL 256
>gi|307136008|gb|ADN33864.1| poly(A) polymerase [Cucumis melo subsp. melo]
Length = 439
Score = 333 bits (855), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 177/354 (50%), Positives = 222/354 (62%), Gaps = 75/354 (21%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+R PKDFDIITSA+LKEV R+F CEIVG+RFPICHVH + TIVEVSSFSTS + F R
Sbjct: 95 ILDRPPKDFDIITSAQLKEVSRIFLWCEIVGRRFPICHVHIDGTIVEVSSFSTSSKPFDR 154
Query: 61 DFK-YEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
E+ + C+E DF+RW+NCLQRDFTING+M+DPY ++YDY+GG+EDIR+A
Sbjct: 155 HLNSAAIEKSMNCEEIDFVRWKNCLQRDFTINGMMYDPYNNVVYDYLGGMEDIRQA---- 210
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ RL MEMNY+L
Sbjct: 211 ------------------------------------------------KARLQMEMNYLL 222
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAA--YLVKH--GFRRRDKRSNLLLSLFSNLDKLLA 235
+YGSAEASLRLLWK+GLLE+LLPIQ +L H GF KRS +LS
Sbjct: 223 SYGSAEASLRLLWKYGLLEILLPIQIGLIHLESHFFGFSPGVKRSQTVLSY--------- 273
Query: 236 PDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDES 295
+A+LA H ALSDQPR PLVVA F LAV+NGG+M+EA+ IA+ IN++H+ +
Sbjct: 274 ---------RVAVLALHVALSDQPRSPLVVATFGLAVHNGGNMMEAISIAKSINRAHNAN 324
Query: 296 FCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
F ELLEP++++ +AL EVMD S K AL KMTDE+FVS A+ Y +AP SDL
Sbjct: 325 FYELLEPQNMEVQALIDEVMDLTTSVKVALHKMTDEHFVSLALESYPQAPASDL 378
>gi|255561389|ref|XP_002521705.1| poly(A) polymerase, putative [Ricinus communis]
gi|223539096|gb|EEF40692.1| poly(A) polymerase, putative [Ricinus communis]
Length = 675
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 161/360 (44%), Positives = 230/360 (63%), Gaps = 7/360 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LNRIPKDFD+IT+A+LK+V + F +CEIVG+RFPIC VH + ++VEVSSF T +
Sbjct: 100 LLNRIPKDFDVITTAKLKQVKKQFHRCEIVGRRFPICRVHVKGSVVEVSSFETVAQH--N 157
Query: 61 DFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ K E ++P GC+ +DFIRWRN + RDFTIN L FDP+ I+DY G+ D+ K+
Sbjct: 158 EGKEEVLISQKPSGCNGRDFIRWRNSMHRDFTINSLFFDPFMNQIFDYANGMADLSFLKL 217
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+TVIPA SFQEDCARILR +RIA RLG S++T ++ LS S+ LD+ R++ME+NY
Sbjct: 218 RTVIPARLSFQEDCARILRGLRIAGRLGLSISKDTESAIRKLSSSVKSLDKARIMMELNY 277
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
ML+YG+AE+++ LL +F LLE+ LP AAYL + S +L+ LF NLD L++ D
Sbjct: 278 MLSYGAAESTIYLLQRFNLLELFLPFHAAYLSQQAGETFSLGSVMLMKLFFNLDTLVSCD 337
Query: 238 RPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFC 297
RPC SSLW+ +LAFH+AL P+D LV VF+ +Y+ G + V+ AR K +
Sbjct: 338 RPCTSSLWVGLLAFHQALVTNPQDALVSWVFASVLYH-GKWKDGVEFARENAKMQVKFAP 396
Query: 298 ELLEPRDLDF-EALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLYHSASKL 356
E+ + E L EV A + ++ + D ++Q+M+ + S L + K+
Sbjct: 397 EISGFSEFKSDEELAEEVSHLASLVQDSVDALMDTDTLAQSMSRFGVTSSSGLVFVSKKI 456
>gi|357120849|ref|XP_003562137.1| PREDICTED: poly(A) polymerase-like [Brachypodium distachyon]
Length = 553
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 159/358 (44%), Positives = 226/358 (63%), Gaps = 4/358 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVR-VFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L R PKDFD+IT+A LK++ + VF +C I+G+RFPIC V + EVSSFST+G +
Sbjct: 108 LLKRAPKDFDVITTASLKQIKKLVFKRCMIIGRRFPICQVKMHGSTFEVSSFSTNGTQVK 167
Query: 60 RDFKYEFERPI-GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
F + G DE D I W+N L+RDFTIN L F+P+ +YDY+ G+ D+RK KV
Sbjct: 168 GSENVNFSEELDGYDEGDIIPWKNSLKRDFTINSLFFNPFNYRVYDYVNGVNDVRKNKVC 227
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
VIPA SF+ED ARILR +RIAARLGF+FS ET+ ++ LS SI+ +D+ RL MEM YM
Sbjct: 228 AVIPAHVSFEEDPARILRGLRIAARLGFQFSSETSTAIRDLSSSIINIDKSRLAMEMKYM 287
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
L++G+AE+S+RLL K+GLL++LLP+QAAYL + R+ +L+ L +NLDKL + DR
Sbjct: 288 LSHGAAESSIRLLGKYGLLDILLPLQAAYLSHQIKGQSSDRNLMLMKLLANLDKLTSADR 347
Query: 239 PCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCE 298
PCH SLW+A+LAFH AL + P+D V+ F+ +Y G +K ++ + E
Sbjct: 348 PCHCSLWLALLAFHSALVNSPQDAQVIKAFASLMYF-GTWDSTIKFLKQDTGAPVTFVPE 406
Query: 299 LLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAP-FSDLYHSASK 355
L+P L + A ++ +T + Q++A Y +A FS L ++K
Sbjct: 407 ALQPSGTKLNNLMEKTSHLASLVNCSVDTLTCLDALQQSLARYPKASQFSGLVFVSNK 464
>gi|449495173|ref|XP_004159755.1| PREDICTED: uncharacterized LOC101212579 [Cucumis sativus]
Length = 647
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/363 (44%), Positives = 228/363 (62%), Gaps = 15/363 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R+PKDFD+IT+A L ++ +F + IVG+RFPIC VH +I EVSSF T+ +
Sbjct: 48 LLRRVPKDFDVITTAGLTQIHNLFCRSRIVGRRFPICMVHIRGSITEVSSFDTAAKHSEE 107
Query: 61 D-FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + P CD+KD IRWRN ++RDFTIN L FDP++ +IYDY G+ D+R K++T
Sbjct: 108 NKITAHSQIPKKCDKKDLIRWRNSMERDFTINSLFFDPFSNVIYDYAEGMADLRSLKLRT 167
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+IPAS SF+ DCARILR +RIAARLG S+ET + SPSI LD+ RL+ME+NYML
Sbjct: 168 LIPASLSFKLDCARILRGLRIAARLGLSISKETETAIHKFSPSITSLDKSRLMMELNYML 227
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
+YG+A SL LL +F LL LLP AAYL K G + S +L+ LF NLDKL++ P
Sbjct: 228 SYGAAVPSLYLLQRFKLLGSLLPFHAAYLDKQGIEKSSLSSVMLMKLFFNLDKLVSCAHP 287
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
+ ++W+A+LAFH AL + P++ LVV F+ +Y+ G+ E V AR ++S E+
Sbjct: 288 SNCNIWVALLAFHLALVNNPQNSLVVLAFAATLYH-GEWNEGVNYAR------EKSLVEI 340
Query: 300 -LEP---RDLDF---EALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLYHS 352
L P R F E L V FA +G ++ +T + + +AM+ + + S L
Sbjct: 341 NLRPEITRSAKFKSEEKLAEGVTRFALKVQGCIAALTSKDCLLEAMSTFPASSNSGLVFV 400
Query: 353 ASK 355
++K
Sbjct: 401 SNK 403
>gi|449456945|ref|XP_004146209.1| PREDICTED: uncharacterized protein LOC101212579 [Cucumis sativus]
Length = 810
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/363 (44%), Positives = 228/363 (62%), Gaps = 15/363 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R+PKDFD+IT+A L ++ +F + IVG+RFPIC VH +I EVSSF T+ +
Sbjct: 124 LLRRVPKDFDVITTAGLTQIHNLFCRSRIVGRRFPICMVHIRGSITEVSSFDTAAKHSEE 183
Query: 61 D-FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + P CD+KD IRWRN ++RDFTIN L FDP++ +IYDY G+ D+R K++T
Sbjct: 184 NKITAHSQIPKKCDKKDLIRWRNSMERDFTINSLFFDPFSNVIYDYAEGMADLRSLKLRT 243
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+IPAS SF+ DCARILR +RIAARLG S+ET + SPSI LD+ RL+ME+NYML
Sbjct: 244 LIPASLSFKLDCARILRGLRIAARLGLSISKETETAIHKFSPSITSLDKSRLMMELNYML 303
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
+YG+A SL LL +F LL LLP AAYL K G + S +L+ LF NLDKL++ P
Sbjct: 304 SYGAAVPSLYLLQRFKLLGSLLPFHAAYLDKQGIEKSSLSSVMLMKLFFNLDKLVSCAHP 363
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
+ ++W+A+LAFH AL + P++ LVV F+ +Y+ G+ E V AR ++S E+
Sbjct: 364 SNCNIWVALLAFHLALVNNPQNSLVVLAFAATLYH-GEWNEGVNYAR------EKSLVEI 416
Query: 300 -LEP---RDLDF---EALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLYHS 352
L P R F E L V FA +G ++ +T + + +AM+ + + S L
Sbjct: 417 NLRPEITRSAKFKSEEKLAEGVTRFALKVQGCIAALTSKDCLLEAMSTFPASSNSGLVFV 476
Query: 353 ASK 355
++K
Sbjct: 477 SNK 479
>gi|224084064|ref|XP_002307206.1| predicted protein [Populus trichocarpa]
gi|222856655|gb|EEE94202.1| predicted protein [Populus trichocarpa]
Length = 458
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 225/357 (63%), Gaps = 4/357 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LNR+PKDFD+IT+A L+++ + F + IVG+RFPIC VH + +++EVSSF TS ++
Sbjct: 50 LLNRVPKDFDVITTANLQQIKKKFHRAHIVGRRFPICIVHVKGSVIEVSSFETSAQQCQE 109
Query: 61 DFKYEFERPI-GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
K + CDEKDF+ W+N +QRDFTIN L FDP+ IYDY G+ED+R K+QT
Sbjct: 110 KEKVLLSQMRRSCDEKDFLLWKNSMQRDFTINSLFFDPFMNRIYDYANGMEDVRSLKLQT 169
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+IPA SFQEDCARILR IRIA RLG S++T + L S+ L++ R+ ME+NYML
Sbjct: 170 LIPARLSFQEDCARILRGIRIAGRLGLSISKDTETAICKLQSSVKSLNKDRIKMELNYML 229
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
+YG+AE+++ LL +F LL++ LP AAYL + + S +L+ L +LDK+++ DRP
Sbjct: 230 SYGAAESTILLLQRFHLLKIFLPFHAAYLHEQADEVSAQGSTMLMKLLYSLDKIVSSDRP 289
Query: 240 CHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCEL 299
C SLW+ +LAFH+AL P+D V+ F+ +Y G E VK AR K E+
Sbjct: 290 CDCSLWVGLLAFHQALVLNPQDAFVIWAFASILY-CGTWQEGVKFARENAKVEGRFVPEI 348
Query: 300 LEPRDLDF-EALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLYHSASK 355
++ E L EV A + A++ TDE +S++++ Y P D++ SK
Sbjct: 349 SGFSEIKSDEKLAEEVSQLASLVQDAVNAFTDEISLSESLSRYLDPPL-DVFVFVSK 404
>gi|218192024|gb|EEC74451.1| hypothetical protein OsI_09859 [Oryza sativa Indica Group]
Length = 558
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/352 (44%), Positives = 217/352 (61%), Gaps = 15/352 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVR-VFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L R PKDFD+IT+A L+++ + VF +C I+GKRFPIC V+ T +EVSSFST+
Sbjct: 110 LLKRAPKDFDVITTASLQQIKKMVFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNANHV- 168
Query: 60 RDFKYEFERPIGC-------DEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ + IGC DE D + W+N ++RDFTIN L F+P+ IYDY+ G+ DI
Sbjct: 169 -----KGSKNIGCSEEFKRYDEGDILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDI 223
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
K KV TVIPA SF+ED ARILR +RIAARLGF FS ET+ ++ LS SI +D+ RL+
Sbjct: 224 SKNKVSTVIPARVSFKEDPARILRGLRIAARLGFEFSSETSAAIRELSLSITDIDKARLM 283
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
ME+NY+L+YG+A +SLRLL K+GLL+ LLP QAAY+ + + +L+ L +NLDK
Sbjct: 284 MELNYLLSYGAAASSLRLLRKYGLLDFLLPFQAAYMSDQMKDKSNDTDLMLMKLLANLDK 343
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSH 292
LL+ DRPC S LW+A+L FH AL + P D V+ F+ +Y G AV + +
Sbjct: 344 LLSADRPCPSCLWLALLTFHSALVNSPHDAQVIRAFAALMYF-GSWEGAVNFLNQDIGAP 402
Query: 293 DESFCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRA 344
E L P E L + A K ++ +T + Q++A YS+A
Sbjct: 403 APFIPETLGPSRSKLENLMEQTSHLASLVKSSVDTLTSIDALQQSLAKYSKA 454
>gi|115450525|ref|NP_001048863.1| Os03g0131400 [Oryza sativa Japonica Group]
gi|108706021|gb|ABF93816.1| polyA polymerase family protein, expressed [Oryza sativa Japonica
Group]
gi|113547334|dbj|BAF10777.1| Os03g0131400 [Oryza sativa Japonica Group]
gi|222624145|gb|EEE58277.1| hypothetical protein OsJ_09295 [Oryza sativa Japonica Group]
Length = 558
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 217/352 (61%), Gaps = 15/352 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVR-VFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L R PKDFD+IT+A L+++ + VF +C I+GKRFPIC V+ T +EVSSFST+
Sbjct: 110 LLKRAPKDFDVITTASLQQIKKMVFQRCIIIGKRFPICQVNMYGTKIEVSSFSTNANHV- 168
Query: 60 RDFKYEFERPIGC-------DEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ + IGC DE D + W+N ++RDFTIN L F+P+ IYDY+ G+ DI
Sbjct: 169 -----KGSKNIGCSEEFKRYDEGDILLWQNSMKRDFTINSLFFNPFNFKIYDYVNGVRDI 223
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
K KV TVIPA SF+ED ARILR +RIAARLGF FS ET+ ++ LS SI +D+ RL+
Sbjct: 224 SKNKVSTVIPARVSFKEDPARILRGLRIAARLGFEFSSETSAAIRELSLSITDIDKARLM 283
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
ME+NY+L+YG+A +SLRLL K+GLL+ LLP QAAY+ + + +L+ L +NLDK
Sbjct: 284 MELNYLLSYGAAASSLRLLRKYGLLDFLLPFQAAYMSDQMKDKSNDTDLMLMKLLANLDK 343
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSH 292
LL+ D+PC S LW+A+L FH AL + P D V+ F+ +Y G AV + +
Sbjct: 344 LLSADQPCPSCLWLALLTFHSALVNSPHDAQVIRAFAALMYF-GSWEGAVNFLNQDIGAP 402
Query: 293 DESFCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRA 344
E L P E L + A K ++ +T + Q++A YS+A
Sbjct: 403 APFIPETLGPSRSKLENLMEQTSHLASLVKSSVDTLTSIDALQQSLAKYSKA 454
>gi|414864626|tpg|DAA43183.1| TPA: hypothetical protein ZEAMMB73_451476 [Zea mays]
Length = 477
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/347 (43%), Positives = 220/347 (63%), Gaps = 9/347 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVR-VFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L R+PKDFD+IT+A L+++ + +F + IVGKRFPIC + ++++E+SSF T +
Sbjct: 117 LLKRVPKDFDVITTASLEQLKKNIFRRSRIVGKRFPICLLKMRDSVIEISSFRTVANYGN 176
Query: 60 R----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
R D+ E G D +D +RW++ ++RDFTINGL F+P IYDY+ G+ D+RK
Sbjct: 177 RSEVVDYVAELN---GSDVRDILRWKDSMRRDFTINGLFFNPMNCKIYDYVNGVRDMRKN 233
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
KV TVIPA SF ED ARILR RIAARLGF+FS ET++ ++ S SI +D+ RL+MEM
Sbjct: 234 KVCTVIPAHISFMEDPARILRGFRIAARLGFQFSSETSNAIRDFSSSINNIDKARLMMEM 293
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
NY+++YG+A S+RLL K+GLL++LLP Q+AYL + R +L+ L SNLD+LL+
Sbjct: 294 NYIMSYGAAAPSVRLLRKYGLLDILLPFQSAYLSEQMKGGSSDRHLMLMKLLSNLDRLLS 353
Query: 236 PDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDES 295
DRPCHSSLW+A+LAFH L P+D LV+ F+ +Y G VK R +
Sbjct: 354 ADRPCHSSLWLALLAFHSTLVIYPQDTLVIRAFAAVLYF-GTWETTVKFLREEVGAEVPF 412
Query: 296 FCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYS 342
E + P + LK + A ++ +T + + Q++A +S
Sbjct: 413 APETMGPSRTKLDCLKEQTSHLASLVNSSVDILTCPHDLEQSLARFS 459
>gi|414864625|tpg|DAA43182.1| TPA: hypothetical protein ZEAMMB73_451476 [Zea mays]
Length = 556
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/347 (43%), Positives = 220/347 (63%), Gaps = 9/347 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVR-VFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L R+PKDFD+IT+A L+++ + +F + IVGKRFPIC + ++++E+SSF T +
Sbjct: 117 LLKRVPKDFDVITTASLEQLKKNIFRRSRIVGKRFPICLLKMRDSVIEISSFRTVANYGN 176
Query: 60 R----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
R D+ E G D +D +RW++ ++RDFTINGL F+P IYDY+ G+ D+RK
Sbjct: 177 RSEVVDYVAELN---GSDVRDILRWKDSMRRDFTINGLFFNPMNCKIYDYVNGVRDMRKN 233
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
KV TVIPA SF ED ARILR RIAARLGF+FS ET++ ++ S SI +D+ RL+MEM
Sbjct: 234 KVCTVIPAHISFMEDPARILRGFRIAARLGFQFSSETSNAIRDFSSSINNIDKARLMMEM 293
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
NY+++YG+A S+RLL K+GLL++LLP Q+AYL + R +L+ L SNLD+LL+
Sbjct: 294 NYIMSYGAAAPSVRLLRKYGLLDILLPFQSAYLSEQMKGGSSDRHLMLMKLLSNLDRLLS 353
Query: 236 PDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDES 295
DRPCHSSLW+A+LAFH L P+D LV+ F+ +Y G VK R +
Sbjct: 354 ADRPCHSSLWLALLAFHSTLVIYPQDTLVIRAFAAVLYF-GTWETTVKFLREEVGAEVPF 412
Query: 296 FCELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYS 342
E + P + LK + A ++ +T + + Q++A +S
Sbjct: 413 APETMGPSRTKLDCLKEQTSHLASLVNSSVDILTCPHDLEQSLARFS 459
>gi|168013056|ref|XP_001759217.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689530|gb|EDQ75901.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 583
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 152/333 (45%), Positives = 214/333 (64%), Gaps = 42/333 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
++ ++PKDFDI+T+AE K+V FS +C IVG+RFP+CHV NT+VEVSSFST+
Sbjct: 122 LVKQVPKDFDILTTAEPKQVKAAFSGRCIIVGRRFPVCHVTSLNTVVEVSSFSTNSGNIK 181
Query: 60 RDFKYEFERPI----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
R YE P+ G E DF RW N L+RDFT+NG+M+DP+ IIYDY+GG+ D+R+
Sbjct: 182 R-ITYE---PVVGTEGWSEDDFSRWDNSLRRDFTVNGIMYDPFKCIIYDYVGGLRDLRRC 237
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
K++TVIPA SF+ED ARILRAIRIAARL F F+ TA+ ++ L SIL L++ RL +E+
Sbjct: 238 KIRTVIPALESFEEDSARILRAIRIAARLEFSFATSTANAIRQLKSSILTLNKTRLQLEV 297
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQ--------AAYLVKHGFRRRDKRSNLLLSLF 227
N M+AYGS+E S+RLLW++G+LE LLP Q A Y +R+ +RS++LL +F
Sbjct: 298 NTMMAYGSSERSVRLLWRYGVLEYLLPFQARQHFGLLARYFSNTNLKRQARRSDILLIIF 357
Query: 228 -------------------------SNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDP 262
+NLDK+ AP+RPCH LW+AILAFH AL ++P
Sbjct: 358 KAQSVCLVIYLVFFRSAFVAIQKLLANLDKVTAPNRPCHGGLWVAILAFHLALVERPWSL 417
Query: 263 LVVAVFSLAVYNGGDMLEAVKIARRINKSHDES 295
V +LA+ G + +A+ +++ + D++
Sbjct: 418 TVGPTVALALSFGTGLEKAITQVQKLCDAVDKN 450
>gi|356495323|ref|XP_003516528.1| PREDICTED: uncharacterized protein LOC100794882 [Glycine max]
Length = 714
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 138/279 (49%), Positives = 189/279 (67%), Gaps = 4/279 (1%)
Query: 1 MLNRIPKDFDIITSAELKEV---VRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR 57
+LNR PKDFD+IT+A+L EV R ++ E+VG+RFPIC VH + ++VEV+SF T R
Sbjct: 100 LLNRTPKDFDVITTAKLMEVRAQFRGLARAEVVGRRFPICLVHIKGSVVEVTSFETVART 159
Query: 58 FSRDFKYEFER-PIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+R ++ + P ++KD R +N L+RDFTIN L +DP+A IYDY G+ D+R K
Sbjct: 160 SNRKEQFLYSLLPKCSNKKDLFRCKNSLRRDFTINSLFYDPFANKIYDYTDGMADLRSLK 219
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++TVIPA SF+ED RILR RIAARLG SRET + S + LD+ ++++E+N
Sbjct: 220 LETVIPAQMSFKEDPGRILRGFRIAARLGLSLSRETEAAMWKYSSLVKSLDKNKIMIELN 279
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
YML+YG+AE SL LLWKF LLE LLP+ AAYL + + SN+L+ LF LD L+A
Sbjct: 280 YMLSYGAAEPSLHLLWKFKLLEFLLPVHAAYLDEQAIKEDAPASNMLMKLFFYLDNLVAC 339
Query: 237 DRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNG 275
DRPC +LW+ +LAFH L + P+D LVV F+ +Y+G
Sbjct: 340 DRPCDCTLWVGLLAFHLTLVNNPQDALVVWAFASVLYHG 378
>gi|42569106|ref|NP_179349.2| polynucleotide adenylyltransferase-like protein [Arabidopsis
thaliana]
gi|330251561|gb|AEC06655.1| polynucleotide adenylyltransferase-like protein [Arabidopsis
thaliana]
Length = 757
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/303 (47%), Positives = 196/303 (64%), Gaps = 19/303 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR--- 57
+LNR+PKD+D+IT+A+LK++ R+F + +++GKRFPICHV +I+EVSSF T
Sbjct: 103 ILNRVPKDYDVITTADLKQIRRLFHRAQVIGKRFPICHVWMGGSIIEVSSFDTVAHSDSD 162
Query: 58 ---------FSRDFKYE-----FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
S D K F+ G D KD RWRN LQRDFTIN L ++P+ IY
Sbjct: 163 LEKSKEKSGVSLDTKANKNNSLFKMYSGWDIKDCKRWRNSLQRDFTINSLFYNPFDFTIY 222
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ED+ K++T++PA SF+EDCARILR +RIAARLG S++ + S+
Sbjct: 223 DYANGMEDLTDLKLRTLVPAHLSFKEDCARILRGLRIAARLGLSLSKDVKTAIPEFVSSV 282
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
LD+ RL+MEMNYMLAYG+A S+ LL KF LL VLLP QAAYL + S +L
Sbjct: 283 ANLDQFRLIMEMNYMLAYGAAAPSILLLMKFKLLHVLLPFQAAYL-DQASKTSLSSSLML 341
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVK 283
+ LFSN+DKL++ D+P LWIA+LAFH AL P++ +VV F+ +Y+ G+ +AV+
Sbjct: 342 VRLFSNMDKLVSCDQPADPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYH-GNWSKAVE 400
Query: 284 IAR 286
AR
Sbjct: 401 FAR 403
>gi|297832374|ref|XP_002884069.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297329909|gb|EFH60328.1| polynucleotide adenylyltransferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 761
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/307 (46%), Positives = 193/307 (62%), Gaps = 23/307 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST---SGRR 57
+L+R+PKD+D+IT+A LK++ R+F + +++GKRFPICHV +I+EVSSF T S
Sbjct: 103 ILHRVPKDYDVITTANLKQIRRLFHRAQVIGKRFPICHVWMGGSIIEVSSFDTVAHSDSE 162
Query: 58 FSRDFKYEFERP------------------IGCDEKDFIRWRNCLQRDFTINGLMFDPYA 99
D + E+ G D KD RWRN LQRDFTIN L ++P+
Sbjct: 163 HEDDLEKSKEKSGVSLDTEANKNNSLFTMYSGWDVKDCNRWRNSLQRDFTINSLFYNPFE 222
Query: 100 KIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHL 159
IYDY G+ED+ K++T++PA SF+EDCARILR +RIAARLG S++ +
Sbjct: 223 LKIYDYANGMEDLTDLKLRTLVPAHLSFKEDCARILRGLRIAARLGLSLSKDIETAIPEF 282
Query: 160 SPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKR 219
S+ LD+ RL+MEMNYMLAYG+A S+ LL KF LL VLLP QAAYL
Sbjct: 283 VSSVANLDQFRLIMEMNYMLAYGAAAPSILLLMKFKLLHVLLPFQAAYL-DQASETSLSS 341
Query: 220 SNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDML 279
S +L+ LFSN+DKL++ D+P LWIA+LAFH AL P++ +VV F+ +Y+ +
Sbjct: 342 SLMLVRLFSNMDKLVSCDQPADPKLWIAVLAFHIALVRNPQEAIVVRAFAALLYH-RNWS 400
Query: 280 EAVKIAR 286
+AVK AR
Sbjct: 401 KAVKFAR 407
>gi|357484075|ref|XP_003612324.1| Poly(A) polymerase [Medicago truncatula]
gi|355513659|gb|AES95282.1| Poly(A) polymerase [Medicago truncatula]
Length = 675
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 133/292 (45%), Positives = 191/292 (65%), Gaps = 8/292 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVF----SQCEIVGKRFPICHVHFENTIVEVSSFSTSGR 56
+LNR PKDFD++T+A+L EV R+F + ++VG+RFP+C VH + +++EV+SF T
Sbjct: 65 VLNRTPKDFDVVTTAKLIEVKRLFRRFGHRADVVGRRFPVCLVHMQGSVIEVTSFHTESE 124
Query: 57 --RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ ++ + E F+ +N L+RDFTIN L +DP+A IYDY G+ D+R
Sbjct: 125 TPKAMKNVLHSLMPKCKNKENRFL-CKNSLRRDFTINSLFYDPFANKIYDYANGMADLRS 183
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
K++TVIPA SF+ED RILR RIAARLG SRE + S + L++ R+++E
Sbjct: 184 LKLETVIPAQISFKEDPGRILRGFRIAARLGLSLSREIEAAIWTCSSLVEDLNKDRMMIE 243
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLL 234
MNYML+YG+AE SLRLLWKF LL+ LLP+QAAYL + + + SN+L+ LF ++D L+
Sbjct: 244 MNYMLSYGAAEPSLRLLWKFKLLQFLLPVQAAYLDEQATKEDAQDSNMLMKLFFHMDNLV 303
Query: 235 APDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIAR 286
RP +LWI +LAFH AL + P+D LVV F+ +Y+ GD +K A+
Sbjct: 304 GCGRPSDCTLWIGLLAFHLALVNNPQDALVVWAFASVLYH-GDWEGGIKFAK 354
>gi|297744919|emb|CBI38416.3| unnamed protein product [Vitis vinifera]
Length = 262
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 111/209 (53%), Positives = 154/209 (73%), Gaps = 1/209 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN+ PKDFD+IT+A+LK++ + F + +IVG+RFPIC VH + +++EVSSF T +
Sbjct: 48 ILNKTPKDFDVITTAKLKQIKKRFRRAQIVGRRFPICRVHVKGSVIEVSSFETVAKHGEE 107
Query: 61 DFKYEFER-PIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
K F + P GCDE DF RWRNC+ RDFTIN L FDP+ IYDY G++D+R K++T
Sbjct: 108 KEKVSFSQMPSGCDESDFNRWRNCMHRDFTINSLFFDPFVNKIYDYANGMKDLRSLKLRT 167
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+IPA SF+EDCAR+LR +RIAARLG FSRET ++ L+ S+ LD+ R+++E+NYML
Sbjct: 168 LIPAQLSFKEDCARMLRGLRIAARLGLSFSRETETAIRSLASSVKSLDKSRIMLELNYML 227
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
+YGSA+ SL LLW+F LL++LLP +
Sbjct: 228 SYGSAKPSLCLLWRFNLLDILLPFHVGSI 256
>gi|26449498|dbj|BAC41875.1| putative poly(A) polymerase [Arabidopsis thaliana]
Length = 571
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 146/216 (67%), Gaps = 2/216 (0%)
Query: 71 GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQED 130
G D KD RWRN LQRDFTIN L ++P+ IYDY G+ED+ K++T++PA SF+ED
Sbjct: 4 GWDIKDCKRWRNSLQRDFTINSLFYNPFDFTIYDYANGMEDLTDLKLRTLVPAHLSFKED 63
Query: 131 CARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRL 190
CARILR +RIAARLG S++ + S+ LD+ RL+MEMNYMLAYG+A S+ L
Sbjct: 64 CARILRGLRIAARLGLSLSKDVKTAIPEFVSSVANLDQFRLIMEMNYMLAYGAAAPSILL 123
Query: 191 LWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILA 250
L KF LL VLLP QAAYL + S +L+ LFSN+DKL++ D+P LWIA+LA
Sbjct: 124 LMKFKLLHVLLPFQAAYL-DQASKTSLSSSLMLVRLFSNMDKLVSCDQPADPKLWIAVLA 182
Query: 251 FHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIAR 286
FH AL P++ +VV F+ +Y+ G+ +AV+ AR
Sbjct: 183 FHIALVRNPQEAIVVRAFAALLYH-GNWSKAVEFAR 217
>gi|307104614|gb|EFN52867.1| hypothetical protein CHLNCDRAFT_58740 [Chlorella variabilis]
Length = 911
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/270 (38%), Positives = 160/270 (59%), Gaps = 21/270 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKD+D++T+AEL ++ R+F +C IVG+ FP+C VH E T++EVSSF+T
Sbjct: 299 LLGGTPKDYDLLTTAELHQIKRLFGRCNIVGRSFPVCQVHAEGTMIEVSSFTTNADLRLI 358
Query: 54 ----SGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
S R R R N +RDFT+NGL++DP++++++D +GG+
Sbjct: 359 PADASTHMIGRQKPKRVARQEAGATWAAARADNAARRDFTVNGLLYDPFSRLLFDSVGGV 418
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
D + +++T+ P SF D ARILR +R+AAR G ETA ++ + +I L +G
Sbjct: 419 ADCQARRLRTICPPQQSFAADPARILRGVRLAARAGLELEPETAAEMEEAAATIGLLPQG 478
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH---------GFRRRDKRS 220
RL ME+ +L YG++E SL L+W+ GLL++LLP A YL +H +RR KR
Sbjct: 479 RLQMELGSLLGYGASERSLALMWRLGLLDMLLPQHALYLKRHRVPRAPRAPSSKRRHKR- 537
Query: 221 NLLLSLFSNLDKLLAPDRPCHSSLWIAILA 250
+LL L LD+ + P +P S+W+A+LA
Sbjct: 538 DLLFELAGELDRHVHPQKPVDPSVWVALLA 567
>gi|242042361|ref|XP_002468575.1| hypothetical protein SORBIDRAFT_01g048240 [Sorghum bicolor]
gi|241922429|gb|EER95573.1| hypothetical protein SORBIDRAFT_01g048240 [Sorghum bicolor]
Length = 353
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/305 (32%), Positives = 147/305 (48%), Gaps = 57/305 (18%)
Query: 43 NTIVEVSSFSTSGRRFSRDFKYEF-ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKI 101
++++E+SSF T + +R + E G D +D +RW++ ++RDFT+NGL F+P
Sbjct: 3 DSVIEISSFQTVPKYGNRSEAVNYVEELNGSDVRDILRWKDSMRRDFTVNGLFFNPMNYK 62
Query: 102 IYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSP 161
IYDY+ G+ D+RK KV TVIPA SF ED
Sbjct: 63 IYDYVNGVRDMRKNKVCTVIPAHISFMED------------------------------- 91
Query: 162 SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSN 221
A S+RLL K+GLL++LLP QAAYL R
Sbjct: 92 ---------------------PAGPSVRLLRKYGLLDILLPFQAAYLSDQLKGGSSDRDL 130
Query: 222 LLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEA 281
+L+ L +NLD+LL+ DRPCHSSLW+A+L FH AL P+D LV+ F+ +Y G
Sbjct: 131 MLMKLLANLDRLLSADRPCHSSLWLALLVFHSALVISPQDTLVIRAFAAMLYF-GTWETT 189
Query: 282 VKIARRINKSHDESFC-ELLEPRDLDFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAG 340
VK + + SF E + P + L + A ++ +T + + Q++A
Sbjct: 190 VKFLEEVGP--EVSFAPETMGPSRTKLDDLMEQTSHLASLVNSSVDTLTCLHGLEQSLAR 247
Query: 341 YSRAP 345
+S P
Sbjct: 248 FSEPP 252
>gi|440577418|emb|CCI55441.1| PH01B031C15.24 [Phyllostachys edulis]
Length = 736
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 114/210 (54%), Gaps = 54/210 (25%)
Query: 1 MLNRIPKDFDIITSAELKEVVR-VFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L R PKDFD+IT+A L+++ R VF +C I+G+RFPIC ++ +I+EVSSF T+
Sbjct: 35 LLKRAPKDFDVITTASLQQIKRRVFKRCIIIGRRFPICQINMHGSIIEVSSFRTNDNYVK 94
Query: 60 RDFKYEFERPI-GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+ + + G DE D +RW+N ++RDFTIN L F+P IYDY+ G+ D+R K
Sbjct: 95 GSEEVDCSDDLNGYDEGDILRWKNSMKRDFTINSLFFNPSIHRIYDYVNGVRDVRNNKT- 153
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
RL+MEM YM
Sbjct: 154 ---------------------------------------------------RLMMEMKYM 162
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
L++G+AE+S+RLL K+GLL++LLP QAAYL
Sbjct: 163 LSHGAAESSVRLLRKYGLLDILLPFQAAYL 192
>gi|414871085|tpg|DAA49642.1| TPA: hypothetical protein ZEAMMB73_390853 [Zea mays]
Length = 373
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 92/117 (78%)
Query: 88 FTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFR 147
F+ + +F+PY++ IYDY+GGIEDI+K+KV+TVIP TSFQED ARILRAIRI A LGF
Sbjct: 247 FSPSKELFNPYSEKIYDYLGGIEDIKKSKVRTVIPVVTSFQEDRARILRAIRIVAHLGFN 306
Query: 148 FSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQ 204
+ET + + L+ + +LD+GR+LMEMNYMLAYGS EASL LLW+F LE LLP Q
Sbjct: 307 IPKETTYCARTLACLVARLDKGRILMEMNYMLAYGSTEASLWLLWRFVHLEHLLPFQ 363
>gi|384252766|gb|EIE26242.1| hypothetical protein COCSUDRAFT_83617 [Coccomyxa subellipsoidea
C-169]
Length = 448
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 144/270 (53%), Gaps = 26/270 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR--FSRDFK 63
PKDFDI+T+A ++ R+F C I+GKRFPI HV+ + +EVSSF T R +D
Sbjct: 19 PKDFDILTTATPVQIKRLFGSCRIIGKRFPIVHVYADGACLEVSSFGTRANRELIPQDAA 78
Query: 64 YEFERPIGCDEKDFIR-----------------WR-----NCLQRDFTINGLMFDPYAKI 101
R D+ R W N + RDFT N +MFDP++ +
Sbjct: 79 AFLPRHKPHDKGKAGRKPGAGMPAAAGARPEVLWASARVDNAMARDFTCNAIMFDPFSAL 138
Query: 102 IYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSP 161
+ DY GG D ++ ++TVI TSF +D AR+LRA+R AAR+G +T + +
Sbjct: 139 LLDYAGGFRDCQRRVLRTVIDPETSFSDDPARMLRAVRHAARVGLTIEEKTGQAMVGKAG 198
Query: 162 SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKR-- 219
+LKL RLLME + +YG+A ASLRLLW++ LL++L+P A + R +R
Sbjct: 199 EVLKLPGSRLLMEAQALFSYGAAAASLRLLWRYRLLDLLVPPLAERFTRRRLPRNPRRPV 258
Query: 220 SNLLLSLFSNLDKLLAPDRPCHSSLWIAIL 249
S +L L LD + P P ++W A++
Sbjct: 259 SEPVLDLLEQLDAKMQPHLPIDWTVWAAVM 288
>gi|4914379|gb|AAD32915.1| putative poly(A) polymerase [Arabidopsis thaliana]
Length = 241
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 18/168 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR--- 57
+LNR+PKD+D+IT+A+LK++ R+F + +++GKRFPICHV +I+EVSSF T
Sbjct: 32 ILNRVPKDYDVITTADLKQIRRLFHRAQVIGKRFPICHVWMGGSIIEVSSFDTVAHSDSD 91
Query: 58 ---------FSRDFKYE-----FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
S D K F+ G D KD RWRN LQRDFTIN L ++P+ IY
Sbjct: 92 LEKSKEKSGVSLDTKANKNNSLFKMYSGWDIKDCKRWRNSLQRDFTINSLFYNPFDFTIY 151
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE 151
DY G+ED+ K + V+ + F + ARILR +RIAARLG S++
Sbjct: 152 DYANGMEDLTDLKFK-VLTILSWFSPNTARILRGLRIAARLGLSLSKD 198
>gi|162449988|ref|YP_001612355.1| Poly(A) polymerase [Sorangium cellulosum So ce56]
gi|161160570|emb|CAN91875.1| Poly(A) polymerase [Sorangium cellulosum So ce56]
Length = 416
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 137/251 (54%), Gaps = 7/251 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFEN-TIVEVSSFSTSGRRFS 59
+L+R PKDFD+ TSA +EV +F I+G+RF + HV F+ ++EV++F + + S
Sbjct: 66 LLDRRPKDFDVATSARPEEVRELFRNSRIIGRRFRLVHVLFQGGKVIEVATFRRNPKEDS 125
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
D E I D + + L+RDF IN L +D A+ I D++GG+ED+R+ V T
Sbjct: 126 DDGS---ELLIRSDNAFGVAHEDALRRDFRINALFYDVEARQILDWVGGMEDVRRQVVHT 182
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ T F+ED RILRA++ A RLGF + + V + ++ R RL E+ +L
Sbjct: 183 IGDPETRFREDPIRILRALKFAGRLGFAITPDVYDAVVYCRDALALAARPRLSEEILRLL 242
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
G A ++ L W+ G+L+VLLP +A L + R D L + +D+ A DRP
Sbjct: 243 RGGQARRTIYLAWETGVLDVLLPEVSALL--YDDRGDDGPGQRLWRVLDYVDRRTAADRP 300
Query: 240 CHSS-LWIAIL 249
+ LW +L
Sbjct: 301 LDDTVLWTLLL 311
>gi|147844279|emb|CAN80033.1| hypothetical protein VITISV_007071 [Vitis vinifera]
Length = 693
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 110/246 (44%), Gaps = 86/246 (34%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN+ PKDFD+IT+A+LK++ + F + +IVG+RFPIC VH + +++EVSSF T +
Sbjct: 48 ILNKTPKDFDVITTAKLKQIKKRFRRAQIVGRRFPICRVHVKGSVIEVSSFETVAKHGEE 107
Query: 61 DFKYEFER-PIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
K F + P GCDE DF RWRN
Sbjct: 108 KEKVSFSQMPSGCDESDFNRWRN------------------------------------- 130
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+R+LR +RIAARLG FSRET ++ L+ S+ LD+G
Sbjct: 131 ------------SRMLRGLRIAARLGLSFSRETETAIRSLASSVKSLDKG---------- 168
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
AYL + + S + + LF NLDKL+ DRP
Sbjct: 169 --------------------------AYLAQQTTEPSAQHSMMFMKLFFNLDKLVTCDRP 202
Query: 240 CHSSLW 245
C SLW
Sbjct: 203 CDCSLW 208
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARR 287
N L+ R S W+ +LAFH AL ++P+D VV S +Y+ G E VK AR+
Sbjct: 327 NFSNELSDIRCLESDPWVGLLAFHMALVNKPQDASVVWTLSSVLYH-GKWTEGVKFARK 384
>gi|331006253|ref|ZP_08329573.1| Poly(A) polymerase [gamma proteobacterium IMCC1989]
gi|330419942|gb|EGG94288.1| Poly(A) polymerase [gamma proteobacterium IMCC1989]
Length = 439
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 145/297 (48%), Gaps = 31/297 (10%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A +EV +VF I+G+RF I HV F I+EV++F R S D ++
Sbjct: 57 PKDFDVSTDATPEEVKKVFRNARIIGRRFRIVHVRFGREIIEVTTF----RGKSSDSSHQ 112
Query: 66 FERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
E G +D + + ++RDFT+N L + P +YDY G++DI+K +++ +
Sbjct: 113 VESNTGQLLRDNVYGNMHSDAIRRDFTVNALYYSPENGSVYDYTNGVDDIKKRQLRIIGD 172
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETA-------HFVKHLSPSILKLDRGRLLMEM 175
T ++ED R+LRAIR +A+LGF +TA H + H+ P+ RL E+
Sbjct: 173 PLTRYKEDPVRLLRAIRFSAKLGFTIEEKTANPIFDNGHLLTHVPPA-------RLFDEI 225
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ GSA AS LL + LL+ L P A + K + L+ ++ N DK +
Sbjct: 226 LKLFLNGSATASYTLLKDYQLLDALFPATMAVMEKSPY-----FEGLISAVMINTDKRIR 280
Query: 236 PDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVYNGGDMLEAVKIARR 287
D+ + L + + +Q R P++ AV A L V I +R
Sbjct: 281 NDKRVTPAFIYGALLWPAFIYEQHRLVTEGVPIIAAVHQAADAVIAQQLAIVAIPKR 337
>gi|29840548|ref|NP_829654.1| poly(A) polymerase [Chlamydophila caviae GPIC]
gi|29834898|gb|AAP05532.1| poly(A) polymerase family protein [Chlamydophila caviae GPIC]
Length = 428
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 112/202 (55%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ VF C +VGKRF + H+ F N I+EVS+F +
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAHIRFSNQIIEVSTFRSGSA--DE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D+ + G E+D +R RDFTINGL +DP + I DY GG+ D++ ++T+
Sbjct: 128 DYLITKDNLWGTAEEDVLR------RDFTINGLFYDPAEETIIDYTGGVSDLQNRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I AR F +T ++ ++K R+ E+ ML
Sbjct: 182 GDPFVRFKQDPVRMLRLLKILARASFTVDPKTLEALQECRYELVKSAPARVFEELIKMLG 241
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G++ +L K+ +LE+L P
Sbjct: 242 SGASSEFFKLTVKYQMLEILFP 263
>gi|15836499|ref|NP_301023.1| poly A polymerase [Chlamydophila pneumoniae J138]
gi|16752066|ref|NP_445432.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39]
gi|7189807|gb|AAF38681.1| poly(A) polymerase family protein [Chlamydophila pneumoniae AR39]
gi|8979340|dbj|BAA99174.1| poly A polymerase [Chlamydophila pneumoniae J138]
Length = 430
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 112/202 (55%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ +F C +VGKRF + H+ F I+EVS+F +
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAIFKNCILVGKRFRLAHIRFSKQIIEVSTFRSGST--DE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+R ++T+
Sbjct: 128 DVLITKDNLWGTPEEDVLR------RDFTINGLFYDPEHEEIIDYTGGVNDLRNRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
T F++D R+LR ++I +R F +T + ++K R R+ E+ ML
Sbjct: 182 GDPFTRFKQDPVRMLRLLKILSRSPFTVETQTQEALIACRQELIKSSRARVFEELIKMLN 241
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G+A+ +LL + LLE+L P
Sbjct: 242 SGAAKNFFQLLIENHLLEILFP 263
>gi|87121697|ref|ZP_01077584.1| polyA polymerase [Marinomonas sp. MED121]
gi|86162948|gb|EAQ64226.1| polyA polymerase [Marinomonas sp. MED121]
Length = 478
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 152/307 (49%), Gaps = 23/307 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+++ PKDFD++T+A +EV +FS ++G+RF + HV F I+EVS+F + ++ S
Sbjct: 69 LIDLAPKDFDVVTNATPEEVHNLFSNSRLIGRRFRLVHVTFGREIIEVSTFRATAQQ-SE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
D K + + + R+ + +RDFT N L +D I+DY GG+ED
Sbjct: 128 DSKKDDKHSDSARSAHGMILRDNIFGDIEQDAERRDFTFNALYYDISDFSIHDYCGGLED 187
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
I KV+ + A +QED R+LRAIR AA+L F ETA +K ++ + + RL
Sbjct: 188 IAAKKVRIIGDAKLRYQEDPVRMLRAIRFAAKLDFDIEAETAAPIKEMAHLLDHIPPARL 247
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRD-KRSNLLLSLFSNL 230
E+ +L G+ + +LL ++GL L P + L++ ++R D L+L N
Sbjct: 248 FEEVLKLLGSGNGVTTYKLLREYGLFRYLFP-ETDELLRSNWQRADINPEALILQGLINT 306
Query: 231 DKLLAPDRPCHSS------LWIAILAFHKALSDQ--PRDPLVVAVFSLAVYNGGDMLEAV 282
DK +A + LW +L H+ Q P P + SL + N + A
Sbjct: 307 DKRIAEGKTTAPYFLYAFLLWPKVLYRHEEFMAQGLPATPALHQAASLVLDN---QVSAT 363
Query: 283 KIARRIN 289
I RR +
Sbjct: 364 SIPRRFS 370
>gi|384450874|ref|YP_005663474.1| poly(A) polymerase family protein [Chlamydophila psittaci 6BC]
gi|407457038|ref|YP_006735611.1| poly(A) polymerase family protein [Chlamydia psittaci VS225]
gi|328914968|gb|AEB55801.1| poly(A) polymerase family protein [Chlamydophila psittaci 6BC]
gi|405784299|gb|AFS23046.1| poly(A) polymerase family protein [Chlamydia psittaci VS225]
Length = 414
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ VF C +VGKRF + H+ F N I+EVS+F +
Sbjct: 56 LLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAHIRFSNQIIEVSTFRSGSA--DE 113
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+ ++T+
Sbjct: 114 DCLITKDNLWGTAEEDVLR------RDFTINGLFYDPTEETIIDYTGGVSDLENRYLRTI 167
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I AR F +T ++ ++K + R+ E+ ML
Sbjct: 168 GDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEALQECRYELIKSSQARVFEELIKMLG 227
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G + +L K+ +LE+L P
Sbjct: 228 SGVSSQFFKLTAKYQILEILFP 249
>gi|329943132|ref|ZP_08291906.1| poly(A) polymerase family protein [Chlamydophila psittaci Cal10]
gi|332287715|ref|YP_004422616.1| poly(A) polymerase [Chlamydophila psittaci 6BC]
gi|384451868|ref|YP_005664466.1| poly(A) polymerase [Chlamydophila psittaci 01DC11]
gi|384452842|ref|YP_005665439.1| poly(A) polymerase [Chlamydophila psittaci 08DC60]
gi|384453821|ref|YP_005666417.1| poly(A) polymerase [Chlamydophila psittaci C19/98]
gi|384454800|ref|YP_005667395.1| poly(A) polymerase [Chlamydophila psittaci 02DC15]
gi|392376946|ref|YP_004064724.1| putative poly(A) polymerase [Chlamydophila psittaci RD1]
gi|407454350|ref|YP_006733458.1| poly(A) polymerase family protein [Chlamydia psittaci 84/55]
gi|407459607|ref|YP_006737710.1| poly(A) polymerase family protein [Chlamydia psittaci M56]
gi|407460977|ref|YP_006738752.1| poly(A) polymerase family protein [Chlamydia psittaci WC]
gi|449071434|ref|YP_007438514.1| putative poly(A) polymerase [Chlamydophila psittaci Mat116]
gi|313848289|emb|CBY17290.1| putative poly(A) polymerase [Chlamydophila psittaci RD1]
gi|325507270|gb|ADZ18908.1| poly(A) polymerase [Chlamydophila psittaci 6BC]
gi|328814679|gb|EGF84669.1| poly(A) polymerase family protein [Chlamydophila psittaci Cal10]
gi|334692602|gb|AEG85821.1| poly(A) polymerase [Chlamydophila psittaci C19/98]
gi|334693578|gb|AEG86796.1| poly(A) polymerase [Chlamydophila psittaci 01DC11]
gi|334694557|gb|AEG87774.1| poly(A) polymerase [Chlamydophila psittaci 02DC15]
gi|334695531|gb|AEG88747.1| poly(A) polymerase [Chlamydophila psittaci 08DC60]
gi|405781109|gb|AFS19859.1| poly(A) polymerase family protein [Chlamydia psittaci 84/55]
gi|405786539|gb|AFS25284.1| poly(A) polymerase family protein [Chlamydia psittaci M56]
gi|405787303|gb|AFS26047.1| poly(A) polymerase family protein [Chlamydia psittaci WC]
gi|449039942|gb|AGE75366.1| putative poly(A) polymerase [Chlamydophila psittaci Mat116]
Length = 428
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ VF C +VGKRF + H+ F N I+EVS+F +
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAHIRFSNQIIEVSTFRSGSA--DE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+ ++T+
Sbjct: 128 DCLITKDNLWGTAEEDVLR------RDFTINGLFYDPTEETIIDYTGGVSDLENRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I AR F +T ++ ++K + R+ E+ ML
Sbjct: 182 GDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEALQECRYELIKSSQARVFEELIKMLG 241
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G + +L K+ +LE+L P
Sbjct: 242 SGVSSQFFKLTAKYQILEILFP 263
>gi|406593736|ref|YP_006740915.1| poly(A) polymerase family protein [Chlamydia psittaci NJ1]
gi|405789608|gb|AFS28350.1| poly(A) polymerase family protein [Chlamydia psittaci NJ1]
Length = 428
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ VF C +VGKRF + H+ F N I+EVS+F +
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAHIRFSNQIIEVSTFRSGSA--DE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+ ++T+
Sbjct: 128 DCLITKDNLWGTAEEDVLR------RDFTINGLFYDPTEETIIDYTGGVSDLENRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I AR F +T ++ ++K + R+ E+ ML
Sbjct: 182 GDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEALQECRYELIKSSQARVFEELIKMLG 241
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G + +L K+ +LE+L P
Sbjct: 242 SGVSSQFFKLTAKYQILEILFP 263
>gi|424825411|ref|ZP_18250398.1| putative poly(A) polymerase [Chlamydophila abortus LLG]
gi|333410510|gb|EGK69497.1| putative poly(A) polymerase [Chlamydophila abortus LLG]
Length = 428
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ VF C +VGKRF + H+ F N I+EVS+F +
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAHIRFSNQIIEVSTFRSGSA--DE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+ ++T+
Sbjct: 128 DCLITKDNLWGTAEEDVLR------RDFTINGLFYDPTEETIIDYTGGVSDLENRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I AR F +T ++ ++K + R+ E+ ML
Sbjct: 182 GDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEALQECRYELIKSSQARVFEELIKMLG 241
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G + +L K+ +LE+L P
Sbjct: 242 SGVSSQFFKLTAKYQILEILFP 263
>gi|62185370|ref|YP_220155.1| poly(A) polymerase [Chlamydophila abortus S26/3]
gi|62148437|emb|CAH64205.1| putative poly(A) polymerase [Chlamydophila abortus S26/3]
Length = 428
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ VF C +VGKRF + H+ F N I+EVS+F +
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAHIRFSNQIIEVSTFRSGSA--DE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+ ++T+
Sbjct: 128 DCLITKDNLWGTAEEDVLR------RDFTINGLFYDPTEETIIDYTGGVSDLENRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I AR F +T ++ ++K + R+ E+ ML
Sbjct: 182 GDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEALQECRYELIKSSQARVFEELIKMLG 241
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G + +L K+ +LE+L P
Sbjct: 242 SGVSSQFFKLTAKYQILEILFP 263
>gi|407455620|ref|YP_006734511.1| poly(A) polymerase family protein [Chlamydia psittaci GR9]
gi|405782163|gb|AFS20912.1| poly(A) polymerase family protein [Chlamydia psittaci GR9]
Length = 428
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ VF C +VGKRF + H+ F N I+EVS+F +
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAHIRFSNQIIEVSTFRSGSA--DE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+ ++T+
Sbjct: 128 DCLITKDNLWGTAEEDVLR------RDFTINGLFYDPTEETIIDYTGGVSDLENRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I AR F +T ++ ++K + R+ E+ ML
Sbjct: 182 GDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEALQECRYELIKSSQARVFEELIKMLG 241
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G + +L K+ +LE+L P
Sbjct: 242 SGVSSQFFKLTAKYQILEILFP 263
>gi|407458358|ref|YP_006736663.1| poly(A) polymerase family protein [Chlamydia psittaci WS/RT/E30]
gi|405785292|gb|AFS24038.1| poly(A) polymerase family protein [Chlamydia psittaci WS/RT/E30]
Length = 428
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ VF C +VGKRF + H+ F N I+EVS+F +
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAHIRFSNQIIEVSTFRSGSA--DE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+ ++T+
Sbjct: 128 DCLITKDNLWGTAEEDVLR------RDFTINGLFYDPTEETIIDYTGGVSDLENRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I AR F +T ++ ++K + R+ E+ ML
Sbjct: 182 GDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEALQECRYELIKSSQARVFEELIKMLG 241
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G + +L K+ +LE+L P
Sbjct: 242 SGVSSQFFKLTAKYQILEILFP 263
>gi|406592677|ref|YP_006739857.1| poly(A) polymerase family protein [Chlamydia psittaci CP3]
gi|406594223|ref|YP_006741953.1| poly(A) polymerase family protein [Chlamydia psittaci MN]
gi|410858729|ref|YP_006974669.1| putative poly(A) polymerase [Chlamydia psittaci 01DC12]
gi|405782655|gb|AFS21403.1| poly(A) polymerase family protein [Chlamydia psittaci MN]
gi|405788549|gb|AFS27292.1| poly(A) polymerase family protein [Chlamydia psittaci CP3]
gi|410811624|emb|CCO02277.1| putative poly(A) polymerase [Chlamydia psittaci 01DC12]
Length = 428
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 110/202 (54%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ VF C +VGKRF + H+ F N I+EVS+F +
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAHIRFSNQIIEVSTFRSGSA--DE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+ ++T+
Sbjct: 128 DCLITKDNLWGTAEEDVLR------RDFTINGLFYDPKEETIIDYTGGVSDLENRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I AR F +T ++ ++K + R+ E+ ML
Sbjct: 182 GDPFVRFKQDPVRMLRLLKILARAHFTVDPKTLEALQECRYELIKSSQARVFEELIKMLG 241
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G + +L K+ +LE+L P
Sbjct: 242 SGVSSQFFKLTAKYQILEILFP 263
>gi|386818085|ref|ZP_10105303.1| poly(A) polymerase [Thiothrix nivea DSM 5205]
gi|386422661|gb|EIJ36496.1| poly(A) polymerase [Thiothrix nivea DSM 5205]
Length = 459
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/263 (30%), Positives = 136/263 (51%), Gaps = 23/263 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L R PKDFDI TSA +E+ ++F+ C ++G+RF + H+++ +EV++F
Sbjct: 68 LLGRTPKDFDIATSARPEEIRKLFNSCRLIGRRFRLAHIYYGRDYLEVATFRAPHDEGDD 127
Query: 55 GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
G + + + + + G E+D WR RDFTIN L ++P + D++GG++D+
Sbjct: 128 GGKVNDEGRIIHDNVYGTLEEDV--WR----RDFTINALFYNPSNGELLDFVGGLDDLHH 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
K++ + F+ED R+LRAIR AA+LGF T + L+ + + RL E
Sbjct: 182 RKIRLIGDPEKRFREDPVRLLRAIRFAAKLGFDIEERTRTPIASLAILLEAVSSARLFDE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL----LSLFSNL 230
+ +L G + RLL ++G+L+ LLP+ + D N LSL N
Sbjct: 242 IIKLLHSGDGLPTYRLLREYGVLQHLLPLTTESI------EEDSTGNFARMVELSL-GNT 294
Query: 231 DKLLAPDRPCHSSLWIAILAFHK 253
D+ +A + + A+L +HK
Sbjct: 295 DQRIAEGKSVMPAFLYAVLLWHK 317
>gi|15618873|ref|NP_225159.1| Poly A polymerase [Chlamydophila pneumoniae CWL029]
gi|4377290|gb|AAD19102.1| Poly A Polymerase [Chlamydophila pneumoniae CWL029]
Length = 430
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 112/202 (55%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ +F C +VGKRF + H+ F I+EVS+F +
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAIFKNCILVGKRFRLAHIRFSKQIIEVSTFRSGST--DE 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+R ++T+
Sbjct: 128 DVLITKDNLWGTPEEDVLR------RDFTINGLFYDPEHEEIIDYTGGVNDLRNRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
T F++D R+LR ++I +R F +T + ++K + R+ E+ ML
Sbjct: 182 GDPFTRFKQDPVRMLRLLKILSRSPFTVETQTQEALIACRQELIKSSQARVFEELIKMLN 241
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G+A+ +LL + LLE+L P
Sbjct: 242 SGAAKNFFQLLIENHLLEILFP 263
>gi|33242334|ref|NP_877275.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183]
gi|384449859|ref|YP_005662461.1| poly(A) polymerase [Chlamydophila pneumoniae LPCoLN]
gi|33236845|gb|AAP98932.1| poly(A) polymerase [Chlamydophila pneumoniae TW-183]
gi|269302757|gb|ACZ32857.1| poly(A) polymerase [Chlamydophila pneumoniae LPCoLN]
Length = 416
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 112/202 (55%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LN PKDFDI TSA+ +E+ +F C +VGKRF + H+ F I+EVS+F +
Sbjct: 56 LLNTTPKDFDISTSAKPEEIKAIFKNCILVGKRFRLAHIRFSKQIIEVSTFRSGST--DE 113
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+R ++T+
Sbjct: 114 DVLITKDNLWGTPEEDVLR------RDFTINGLFYDPEHEEIIDYTGGVNDLRNRYLRTI 167
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
T F++D R+LR ++I +R F +T + ++K + R+ E+ ML
Sbjct: 168 GDPFTRFKQDPVRMLRLLKILSRSPFTVETQTQEALIACRQELIKSSQARVFEELIKMLN 227
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G+A+ +LL + LLE+L P
Sbjct: 228 SGAAKNFFQLLIENHLLEILFP 249
>gi|88705696|ref|ZP_01103406.1| polyA polymerase [Congregibacter litoralis KT71]
gi|88700209|gb|EAQ97318.1| polyA polymerase [Congregibacter litoralis KT71]
Length = 403
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 137/278 (49%), Gaps = 27/278 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFDI T A +EV +F I+G+RF I HV F ++EV++F
Sbjct: 22 LLGGHPKDFDIATDATPEEVHALFGNSRIIGRRFRIVHVRFGREVIEVTTFRGHHDDTEA 81
Query: 52 STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+T +R SR + G E+D +R RD T+N L +D + ++D +GG++D
Sbjct: 82 TTGAKRSSRGLLLR-DNVFGTLEEDAVR------RDLTVNALYYDSGSFEVFDQVGGLDD 134
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ +V+ + +T ++ED R+LR +R AA+LGF + + + L+ + + RL
Sbjct: 135 LEARQVRVIGDPATRYREDPVRMLRCLRFAAKLGFNVEKSSGAAIPRLAALLDDIPPARL 194
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E + G+A+A+LRLL ++ E L P A GF R LL + N D
Sbjct: 195 FDEFGKLFLTGNAQATLRLLREYRCFEHLFPDSARLADSDGFYDR-----LLDAAMGNTD 249
Query: 232 KLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+ + ++P + LW A+ + L +Q P+
Sbjct: 250 QRIRQEKPVTPAFILAAVLWPAVCERRQQLENQGEKPV 287
>gi|256829174|ref|YP_003157902.1| poly(A) polymerase [Desulfomicrobium baculatum DSM 4028]
gi|256578350|gb|ACU89486.1| poly(A) polymerase [Desulfomicrobium baculatum DSM 4028]
Length = 424
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 129/241 (53%), Gaps = 25/241 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFD+ T+A ++ ++F ++G+RF + H+ F++ ++E S+F R
Sbjct: 47 LLGRTPKDFDVSTNATPSQIKKIFQNYFLIGRRFRLAHIRFDDHVIETSTF-----RRCP 101
Query: 61 DFKYEFERPIGCDEKDFIRWRNC--------LQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
D + E DE ++ NC L+RDFTINGL ++ I D++GG+ DI
Sbjct: 102 DQEEE-----NGDEDLYMLRDNCYGTPEEDALRRDFTINGLFYEVERFSIIDHVGGLSDI 156
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
++ + + F+ED R++RA+R AARL F T + + ILK R+
Sbjct: 157 ENRLIRCIGDPNIRFREDPVRMIRAVRFAARLDFHIEPATYNAIMRHHEEILKASPPRVF 216
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL-VKHGFRRRDKRSNLLLSLFSNLD 231
E+ + AYGS E ++RLL+K GLL LLP A +L HG + ++L + +LD
Sbjct: 217 EELQKLFAYGSGEKAVRLLYKTGLLHNLLPEIADFLDHDHG------QDSILWTWLEHLD 270
Query: 232 K 232
+
Sbjct: 271 R 271
>gi|292491190|ref|YP_003526629.1| poly(A) polymerase [Nitrosococcus halophilus Nc4]
gi|291579785|gb|ADE14242.1| poly(A) polymerase [Nitrosococcus halophilus Nc4]
Length = 402
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 130/255 (50%), Gaps = 14/255 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L PKDFD+ T A +++ +F C +VG+RF + HV F I+EV++F G+ S
Sbjct: 23 LLGHEPKDFDVTTDARPEQIRDLFRSCRLVGRRFRLAHVRFGRDIIEVATFRGPPGKGLS 82
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + + G E+D WR RDF++N L ++ + DY GG+ED++ +++
Sbjct: 83 ENGRIVSDNVYGTLEQDA--WR----RDFSVNALYYNIRDFSVVDYTGGMEDLKAGRLRL 136
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ T ++ED R+LRA+R AA+LGF F E+ + L+PS+ ++ RL E+ +
Sbjct: 137 IGDPVTRYREDPVRMLRAVRFAAKLGFTFHPESEKPIWDLAPSLQEIPSARLFEEVLKLF 196
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH--GFRRRDKRSNLLLSLFSNLDKLLAPD 237
G A + LL F L + L P A L + GF R L+ SN D +
Sbjct: 197 LGGCAVQTFELLRHFHLFQWLFPQTEACLAEEEKGFPR-----TFLVQALSNTDTRIEEG 251
Query: 238 RPCHSSLWIAILAFH 252
+P + A L +
Sbjct: 252 KPVTPAFLFAALLWE 266
>gi|297620654|ref|YP_003708791.1| poly(A) polymerase [Waddlia chondrophila WSU 86-1044]
gi|297375955|gb|ADI37785.1| Poly(A) polymerase [Waddlia chondrophila WSU 86-1044]
gi|337293849|emb|CCB91836.1| poly(A) polymerase [Waddlia chondrophila 2032/99]
Length = 413
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 115/213 (53%), Gaps = 18/213 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQ-CEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
++ R PKDFDI TSA +E+ ++F + C ++GKRF + H+ F I+EVS+F SG S
Sbjct: 47 LVKREPKDFDISTSAHPQEIKKIFRRNCFLIGKRFRLAHIKFGKKIIEVSTFR-SGENAS 105
Query: 60 ----RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
RD + G +E+D IR RDFTINGL +DP+ + DY+GG EDI +
Sbjct: 106 DLIVRDNTW------GTEEEDVIR------RDFTINGLFYDPFEHKVIDYVGGWEDIHQK 153
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++++ F++D R+LR I+ AR GF +T + I K R+L EM
Sbjct: 154 VLRSIGDPIIRFKQDPVRMLRLIKFRARFGFNIDEQTKQALIATRKEITKSSPARILEEM 213
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
ML G+A L+ + +L +L P+ L
Sbjct: 214 LRMLESGAAAQFFHLMTQAKMLHLLFPMLTTIL 246
>gi|282890004|ref|ZP_06298538.1| hypothetical protein pah_c009o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338174403|ref|YP_004651213.1| poly(A) polymerase [Parachlamydia acanthamoebae UV-7]
gi|281500096|gb|EFB42381.1| hypothetical protein pah_c009o016 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336478761|emb|CCB85359.1| poly(A) polymerase [Parachlamydia acanthamoebae UV-7]
Length = 423
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 122/213 (57%), Gaps = 16/213 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQ-CEIVGKRFPICHVHFENTIVEVSSFSTS---GR 56
++ + PKD+DI TSA+ +E+ ++F + C ++G+RF + H+ F++ I+EVS+F + G
Sbjct: 47 LIKQTPKDYDISTSAKPEEIKQLFQKSCLLIGRRFRLAHIRFKHKIIEVSTFRSGDNEGD 106
Query: 57 RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+D ++ G E+D +R RDFTINGL +DP I D++GG EDI+
Sbjct: 107 LILQDNQW------GSPEEDVLR------RDFTINGLFYDPANHSIIDFVGGWEDIKHKL 154
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++T+ + F++D R++R ++ AR GF ++ + I+K R+L E+
Sbjct: 155 LRTIGDPAIRFKQDPVRMIRLLKFRARFGFEIDADSKKALVQCRKEIMKSSPARVLEEIF 214
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML GSA + L+ K G+LE+L P+ +L
Sbjct: 215 RMLESGSAASFFHLMAKGGILELLFPLLTQFLA 247
>gi|386718109|ref|YP_006184435.1| Poly(A) polymerase [Stenotrophomonas maltophilia D457]
gi|384077671|emb|CCH12260.1| Poly(A) polymerase [Stenotrophomonas maltophilia D457]
Length = 461
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 128/254 (50%), Gaps = 14/254 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++N PKDFD+ T A ++V ++F C ++G+RF + HV F I+EV++F + S
Sbjct: 69 LVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSG 128
Query: 61 DFKYEF-----ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D + E + G E D IR RDFT N L + + DY GG ED++
Sbjct: 129 DREMENGMLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYTGGFEDVQAR 182
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + +QED R+LRA+R+AA+LGF+ TA + HL+ + + RL E+
Sbjct: 183 LMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEV 242
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G AS L ++GLL+VL P A L + R +L+ +N D +A
Sbjct: 243 LKLFLSGHGVASFEGLERYGLLDVLFPESAKALKAN---RTGALRRMLVEGLANTDARVA 299
Query: 236 PDRPCHSSLWIAIL 249
D P + A+L
Sbjct: 300 NDEPVSPAFLFALL 313
>gi|397667160|ref|YP_006508697.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila]
gi|395130571|emb|CCD08816.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila]
Length = 423
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 129/255 (50%), Gaps = 18/255 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L++ PKDFDI T+A EV +F I+G+RF + H+ F I+EV++F S +
Sbjct: 46 LLHKAPKDFDIATNATPNEVKNLFKNARIIGRRFKLVHILFHREIIEVATFRGHNSSDAS 105
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+F+ + G ++D WR RDFTIN L ++ I D+ GG+ED+++
Sbjct: 106 HQFNERGMLVRDNVYGSLDED--AWR----RDFTINSLYYNISDSSIIDFTGGVEDVKQK 159
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T +QED R+LRA+R +A+L F S ET +S I + RL E+
Sbjct: 160 LIRIIGDPVTRYQEDPVRMLRAVRFSAKLQFNLSPETKAPFPKISHLITHVSSSRLFDEI 219
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLL 234
+ G AE+ +LL ++GL L P AA H N LLS+ N D +
Sbjct: 220 TKLYQCGEAESVQKLLVEYGLFNYLFPQTAALFDSH------YPVNPLLSIALENTDTRI 273
Query: 235 APDRPCHSSLWIAIL 249
+P + IA+L
Sbjct: 274 RDGKPVTPAFLIAVL 288
>gi|408794509|ref|ZP_11206114.1| poly(A) polymerase [Leptospira meyeri serovar Hardjo str. Went 5]
gi|408461744|gb|EKJ85474.1| poly(A) polymerase [Leptospira meyeri serovar Hardjo str. Went 5]
Length = 493
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 109/211 (51%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++ + PKDFDI+TSA ++ R+F+ C I+GKRF I H+ F+ I+EVS+F +
Sbjct: 69 LMGKRPKDFDIVTSATPNQIKRIFNNCRIIGKRFKIVHIIFKGKIIEVSTFRSLPEHRLE 128
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
K E + I D + +RDFTIN L +DP I DY+GG EDI+K V+ +
Sbjct: 129 KHKAENDYLIKRDNSFGTAKEDAARRDFTINSLFYDPKNDSILDYVGGFEDIQKKIVRVI 188
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
SF+ED R+LRA++ + LG ++T +K + K RLL E N M
Sbjct: 189 GDPDISFKEDPVRMLRAVKFSVLLGLDIEKKTKLAIKKNRLELEKSSTARLLEEYNKMFR 248
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
L + LL+VL A L K+
Sbjct: 249 TWKTSIIFEGLAENHLLDVLFKEPADKLKKN 279
>gi|237809043|ref|YP_002893483.1| poly(A) polymerase [Tolumonas auensis DSM 9187]
gi|237501304|gb|ACQ93897.1| poly(A) polymerase [Tolumonas auensis DSM 9187]
Length = 521
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 137/258 (53%), Gaps = 18/258 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRF-- 58
+L +IPKDFD++T A +++ ++F+ C ++G+RF + H+ F I+EV++F +
Sbjct: 113 LLGKIPKDFDVVTDAHPEQIRKLFNNCRLIGRRFRLAHIVFGRDIIEVATFRGHHHQVNT 172
Query: 59 SRDFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
S++ + E + G E+D R RDFT+N L ++ ++D+ GG+ D
Sbjct: 173 SKNIAEQSEEGMLLRDNVYGTIEEDAER------RDFTVNALYYNIKDFSLHDFHGGLND 226
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ K++ + T ++ED R+LRA+R AA+LG S +A + L+P + + RL
Sbjct: 227 LAAGKLELIGDPETRYREDPVRMLRAVRFAAKLGLTISDRSAEPISRLAPLLQDIPSARL 286
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E + G A ++ +LL KFGL + L P QAA L+ +R L +N D
Sbjct: 287 FEETIKLFLAGHALSTYQLLRKFGLFQQLFP-QAAKLLTPDNNSAYER--FLEKALANSD 343
Query: 232 KLLAPDRPCHSSLWIAIL 249
K +A ++P + + A L
Sbjct: 344 KRVATEQPVTPTFFYATL 361
>gi|89898029|ref|YP_515139.1| Poly (A) polymerase [Chlamydophila felis Fe/C-56]
gi|89331401|dbj|BAE80994.1| Poly (A) polymerase [Chlamydophila felis Fe/C-56]
Length = 427
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 112/203 (55%), Gaps = 10/203 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+LN PKDFDI TSA+ +E+ VF C +VGKRF + H+ F N I+EVS+F S S S
Sbjct: 70 LLNTTPKDFDISTSAKPEEIKAVFKNCILVGKRFRLAHIRFSNQIIEVSTFRSGSADEDS 129
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
K + G E+D +R RDFTINGL +DP + I DY GG+ D+ ++T
Sbjct: 130 LIIK---DNLWGTAEEDVLR------RDFTINGLFYDPTEETIIDYTGGVSDLENRYLRT 180
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ F++D R+LR ++I +R F +T ++ ++K + R+ E+ ML
Sbjct: 181 IGDPFVRFKQDPVRMLRLLKILSRAQFTVDPKTLEALRECRYELIKSSQARVFEELIKML 240
Query: 180 AYGSAEASLRLLWKFGLLEVLLP 202
G + +L ++ +LE+L P
Sbjct: 241 GSGVSSKFFKLTVEYQILEILFP 263
>gi|408823893|ref|ZP_11208783.1| poly(A) polymerase [Pseudomonas geniculata N1]
Length = 457
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 128/254 (50%), Gaps = 14/254 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++N PKDFD+ T A ++V ++F C ++G+RF + HV F I+EV++F + S
Sbjct: 67 LVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSG 126
Query: 61 DFKYEF-----ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D + E + G E D IR RDFT N L + + DY GG ED++
Sbjct: 127 DREMENGMLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYTGGFEDVQAR 180
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + ++ED R+LRA+R+AA+LGF+ TA + HL+ + + RL E+
Sbjct: 181 LMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEV 240
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G AS L ++GLL+VL P A L + R +L+ +N D +A
Sbjct: 241 LKLFLSGHGVASFEGLERYGLLDVLFPESAKALKSN---RTGALRRMLVEGLANTDARVA 297
Query: 236 PDRPCHSSLWIAIL 249
D P + A+L
Sbjct: 298 NDEPVSPAFLFALL 311
>gi|222616187|gb|EEE52319.1| hypothetical protein OsJ_34338 [Oryza sativa Japonica Group]
Length = 459
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 128/254 (50%), Gaps = 14/254 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++N PKDFD+ T A ++V ++F C ++G+RF + HV F I+EV++F + S
Sbjct: 69 LVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSG 128
Query: 61 DFKYEF-----ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D + E + G E D IR RDFT N L + + DY GG ED++
Sbjct: 129 DREMENGMLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYTGGFEDVQAR 182
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + ++ED R+LRA+R+AA+LGF+ TA + HL+ + + RL E+
Sbjct: 183 LMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEV 242
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G AS L ++GLL+VL P A L + R +L+ +N D +A
Sbjct: 243 LKLFLSGHGVASFEGLERYGLLDVLFPESAKALKSN---RTGALRRMLVEGLANTDARVA 299
Query: 236 PDRPCHSSLWIAIL 249
D P + A+L
Sbjct: 300 NDEPVSPAFLFALL 313
>gi|307610237|emb|CBW99798.1| poly(A) polymerase [Legionella pneumophila 130b]
Length = 423
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 128/255 (50%), Gaps = 18/255 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L++ PKDFDI T+A EV +F I+G+RF + H+ F I+EV++F S +
Sbjct: 46 LLHKAPKDFDIATNATPNEVKNLFKNARIIGRRFKLVHILFHREIIEVATFRGHNSSDAS 105
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+F+ + G ++D WR RDFTIN L ++ I D+ GG+ED+++
Sbjct: 106 HQFNERGMLVRDNVYGSLDED--AWR----RDFTINSLYYNISDSSIIDFTGGVEDVKQK 159
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T +QED R+LRA+R +A+L F S ET +S I + RL E+
Sbjct: 160 LIRIIGDPVTRYQEDPVRMLRAVRFSAKLQFNLSPETKAPFPKISHLITHVSSSRLFDEI 219
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLL 234
+ G AE+ +LL ++GL L P AA H N LL + N D +
Sbjct: 220 TKLYQCGEAESVQKLLVEYGLFNYLFPQTAALFDSH------YPVNPLLGIALENTDTRI 273
Query: 235 APDRPCHSSLWIAIL 249
+P + IA+L
Sbjct: 274 RDGKPVTPAFLIAVL 288
>gi|183220775|ref|YP_001838771.1| Poly(A) polymerase [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
gi|167779197|gb|ABZ97495.1| Poly(A) polymerase (PAP; Plasmid copy number protein) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 497
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 105/200 (52%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++ + PKDFDI+TSA ++ RVF+ C I+GKRF I H+ F+ I+EVS+F +
Sbjct: 74 LMGKRPKDFDIVTSATPNQIKRVFNNCRIIGKRFKIVHIIFKGKIIEVSTFRSLPEHRLE 133
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
K E + I D + +RDFTIN L +DP I DY+GG EDI+K V+ +
Sbjct: 134 KHKAENDYLIKRDNSFGTAKEDAARRDFTINSLFYDPKNDSILDYVGGFEDIQKKIVRVI 193
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
SF+ED R+LRA++ + LG ++T +K + K RLL E N M
Sbjct: 194 GDPDISFKEDPVRMLRAVKFSVLLGLDIEKKTKLAIKKNRLELEKSSTARLLEEYNKMFR 253
Query: 181 YGSAEASLRLLWKFGLLEVL 200
L + LL+VL
Sbjct: 254 TWKTSIIFEGLAENHLLDVL 273
>gi|83648899|ref|YP_437334.1| tRNA nucleotidyltransferase/poly(A) polymerase [Hahella chejuensis
KCTC 2396]
gi|83636942|gb|ABC32909.1| tRNA nucleotidyltransferase/poly(A) polymerase [Hahella chejuensis
KCTC 2396]
Length = 457
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 129/253 (50%), Gaps = 8/253 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ TSA ++V F+ C ++G+RF + HV F I+EV++F +
Sbjct: 67 LLGEQPKDFDVATSATPEQVREQFNNCRLIGRRFRLAHVRFGREIIEVATFRAGHQNAGE 126
Query: 61 DFKYEFERPIGCDEKDFI---RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D + + + L+RDFT+N L + IYDY GGIEDI +
Sbjct: 127 DDGDAVTSDSGQILRDNVYGNQEEDALRRDFTVNALYYCVRDFSIYDYAGGIEDIEHRVL 186
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA R AA+L F TA + L P +L + RL E+
Sbjct: 187 RLIGDPETRYREDPVRMLRAARFAAKLDFSIEERTASPILELGPLLLNIPSARLFEEVLK 246
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G A + +L +F L + L P + L+++ +K L+L N DK +A D
Sbjct: 247 LFLSGKAVRTFEILRQFDLFKFLFP-ETDRLLENEHPHAEK---LILQALRNTDKRIAQD 302
Query: 238 RPCHSS-LWIAIL 249
+P + L+ A+L
Sbjct: 303 KPVTPAFLYAAML 315
>gi|344206977|ref|YP_004792118.1| poly(A) polymerase [Stenotrophomonas maltophilia JV3]
gi|343778339|gb|AEM50892.1| poly(A) polymerase [Stenotrophomonas maltophilia JV3]
Length = 461
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 128/254 (50%), Gaps = 14/254 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++N PKDFD+ T A ++V ++F C ++G+RF + HV F I+EV++F + S
Sbjct: 69 LVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSG 128
Query: 61 DFKYEF-----ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D + E + G E D IR RDFT N L + + DY GG ED++
Sbjct: 129 DREMENGMLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYTGGFEDVQAR 182
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + ++ED R+LRA+R+AA+LGF+ TA + HL+ + + RL E+
Sbjct: 183 LMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEV 242
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G AS L ++GLL+VL P A L + R +L+ +N D +A
Sbjct: 243 LKLFLSGHGVASFEGLERYGLLDVLFPESAKALKAN---RTGALRRMLVEGLANTDARVA 299
Query: 236 PDRPCHSSLWIAIL 249
D P + A+L
Sbjct: 300 NDEPVSPAFLFALL 313
>gi|189910875|ref|YP_001962430.1| tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167775551|gb|ABZ93852.1| tRNA nucleotidyltransferase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
Length = 492
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 105/200 (52%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++ + PKDFDI+TSA ++ RVF+ C I+GKRF I H+ F+ I+EVS+F +
Sbjct: 69 LMGKRPKDFDIVTSATPNQIKRVFNNCRIIGKRFKIVHIIFKGKIIEVSTFRSLPEHRLE 128
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
K E + I D + +RDFTIN L +DP I DY+GG EDI+K V+ +
Sbjct: 129 KHKAENDYLIKRDNSFGTAKEDAARRDFTINSLFYDPKNDSILDYVGGFEDIQKKIVRVI 188
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
SF+ED R+LRA++ + LG ++T +K + K RLL E N M
Sbjct: 189 GDPDISFKEDPVRMLRAVKFSVLLGLDIEKKTKLAIKKNRLELEKSSTARLLEEYNKMFR 248
Query: 181 YGSAEASLRLLWKFGLLEVL 200
L + LL+VL
Sbjct: 249 TWKTSIIFEGLAENHLLDVL 268
>gi|194290641|ref|YP_002006548.1| poly(a) polymerase i [Cupriavidus taiwanensis LMG 19424]
gi|193224476|emb|CAQ70487.1| poly(A) polymerase I [Cupriavidus taiwanensis LMG 19424]
Length = 507
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 134/278 (48%), Gaps = 29/278 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 70 LLGIKPKDFDVATNATPEQVQSLFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 129
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
GRR R D K G +D + W + +RDFTIN + +DP
Sbjct: 130 AIASETLPEGRRLKRAELDSKTHAIDASGRVLRDNV-WGSQAEDAERRDFTINAMYYDPA 188
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
A+ ++DY G+EDIR ++ + +T ++ED R+LR +R AA+ GF T H +
Sbjct: 189 AQTVHDYHHGMEDIRARTLRMIGDPATRYREDPVRMLRVVRFAAKTGFDIDEATRHPIAG 248
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L+ I + RL EM +L G A ASL+ L K GL + LLP+ L + +R
Sbjct: 249 LAELIHNVPSARLFDEMLKLLMSGHAWASLQELRKAGLHKGLLPLLDVALEQPMGQR--- 305
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
+ N D+ + +P A L +H L
Sbjct: 306 ---FVQLALDNTDRRVQAGKPVSPGFLFAALLWHHVLQ 340
>gi|52841768|ref|YP_095567.1| poly(A) polymerase [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|378777403|ref|YP_005185840.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila
ATCC 43290]
gi|52628879|gb|AAU27620.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|364508217|gb|AEW51741.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila
ATCC 43290]
Length = 436
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 130/258 (50%), Gaps = 24/258 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A EV +F I+G+RF + H+ F I+EV++F S
Sbjct: 59 LLHKAPKDFDIATNATPNEVKNLFKNARIIGRRFKLVHILFHREIIEVATFRGHN---SS 115
Query: 61 DFKYEF-ERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
D ++F ER + G ++D WR RDFTIN L ++ I D+ GG+ED+
Sbjct: 116 DASHQFNERGMLVRDNVYGSLDED--AWR----RDFTINSLYYNISDSSIIDFTGGVEDV 169
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
++ ++ + T +QED R+LRA+R +A+L F S ET +S I + RL
Sbjct: 170 KQKLIRIIGDPVTRYQEDPVRMLRAVRFSAKLQFNLSPETKAPFPKISHLITHVSSSRLF 229
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLD 231
E+ + G AE+ +LL ++GL L P AA H N LL + N D
Sbjct: 230 DEITKLYQCGEAESVQKLLVEYGLFNYLFPQTAALFDSH------YPVNPLLGIALENTD 283
Query: 232 KLLAPDRPCHSSLWIAIL 249
+ +P + IA+L
Sbjct: 284 TRIRDGKPVTPAFLIAVL 301
>gi|254524051|ref|ZP_05136106.1| polynucleotide adenylyltransferase [Stenotrophomonas sp. SKA14]
gi|219721642|gb|EED40167.1| polynucleotide adenylyltransferase [Stenotrophomonas sp. SKA14]
Length = 461
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 128/254 (50%), Gaps = 14/254 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++N PKDFD+ T A ++V ++F C ++G+RF + HV F I+EV++F + S
Sbjct: 69 LVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSG 128
Query: 61 DFKYEF-----ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D + E + G E D +R RDFT N L + + DY GG ED++
Sbjct: 129 DREMENGMLVRDNVYGSIEDDAVR------RDFTCNALYYAIEDFSVRDYTGGFEDVQAR 182
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + ++ED R+LRA+R+AA+LGF+ TA + HL+ + + RL E+
Sbjct: 183 LMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEV 242
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G AS L ++GLL+VL P A L + R +L+ +N D +A
Sbjct: 243 LKLFLSGHGVASFEGLERYGLLDVLFPESAKALKSN---RTGALRRMLVEGLANTDARVA 299
Query: 236 PDRPCHSSLWIAIL 249
D P + A+L
Sbjct: 300 NDEPVSPAFLFALL 313
>gi|148359072|ref|YP_001250279.1| oly(A) polymerase [Legionella pneumophila str. Corby]
gi|296107120|ref|YP_003618820.1| poly(A) polymerase [Legionella pneumophila 2300/99 Alcoy]
gi|148280845|gb|ABQ54933.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
pneumophila str. Corby]
gi|295649021|gb|ADG24868.1| poly(A) polymerase [Legionella pneumophila 2300/99 Alcoy]
Length = 423
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 128/255 (50%), Gaps = 18/255 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L++ PKDFDI T+A EV +F I+G+RF + H+ F I+EV++F S +
Sbjct: 46 LLHKAPKDFDIATNATPNEVKNLFKNARIIGRRFKLVHILFHREIIEVATFRGHNSSDAS 105
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+F+ + G ++D WR RDFTIN L ++ I D+ GG+ED+++
Sbjct: 106 HQFNERGMLVRDNVYGSLDED--AWR----RDFTINSLYYNISDSSIIDFTGGVEDVKQK 159
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T +QED R+LRA+R +A+L F S ET +S I + RL E+
Sbjct: 160 LIRIIGDPVTRYQEDPVRMLRAVRFSAKLQFNLSPETKAPFPKISHLITHVSSSRLFDEI 219
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLL 234
+ G AE+ +LL ++GL L P AA H N LL + N D +
Sbjct: 220 TKLYQCGEAESVQKLLVEYGLFNYLFPQTAALFDSH------YPVNPLLGIALENTDTRI 273
Query: 235 APDRPCHSSLWIAIL 249
+P + IA+L
Sbjct: 274 RDGKPVTPAFLIAVL 288
>gi|54294419|ref|YP_126834.1| poly(A) polymerase [Legionella pneumophila str. Lens]
gi|53754251|emb|CAH15728.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
pneumophila str. Lens]
Length = 423
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 128/255 (50%), Gaps = 18/255 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L++ PKDFDI T+A EV +F I+G+RF + H+ F I+EV++F S +
Sbjct: 46 LLHKAPKDFDIATNATPNEVKNLFKNARIIGRRFKLVHILFHREIIEVATFRGHNSSDAS 105
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+F+ + G ++D WR RDFTIN L ++ I D+ GG+ED+++
Sbjct: 106 HQFNERGMLVRDNVYGSLDED--AWR----RDFTINSLYYNISDSSIIDFTGGVEDVKQK 159
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T +QED R+LRA+R +A+L F S ET +S I + RL E+
Sbjct: 160 LIRIIGDPVTRYQEDPVRMLRAVRFSAKLQFNLSPETKAPFPKISHLITHVSSSRLFDEI 219
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLL 234
+ G AE+ +LL ++GL L P AA H N LL + N D +
Sbjct: 220 TKLYQCGEAESVQKLLVEYGLFNYLFPQTAALFDSH------YPVNPLLGIALENTDTRI 273
Query: 235 APDRPCHSSLWIAIL 249
+P + IA+L
Sbjct: 274 RDGKPVTPAFLIAVL 288
>gi|297180697|gb|ADI16906.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured gamma
proteobacterium HF0010_16J05]
Length = 435
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 112/223 (50%), Gaps = 5/223 (2%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A L EV R+F + IVG+RFPI HV + ++EVS+F S S + +++
Sbjct: 80 PKDFDVATDAPLDEVKRIFRRSRIVGRRFPIAHVRYGRNLIEVSTFRQS---VSENIEHD 136
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
+ I D+ + +RDF+IN L FDP I DY+GG+ED+ +V+ + +
Sbjct: 137 AQGMILRDKAYGTLQEDAFRRDFSINALYFDPNKNEIIDYVGGLEDLAAGEVKLIGDPAV 196
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAE 185
ED RILRA+R A +LGF + + + + RL E M G E
Sbjct: 197 RLAEDPVRILRAVRFANKLGFSLDPRIIELFEDSARRLTAIPPARLFDEFLKMFLTGCGE 256
Query: 186 ASLRLLWKFGLLEVLLPI--QAAYLVKHGFRRRDKRSNLLLSL 226
+ + G+ VL P +YL+ R D+R LS+
Sbjct: 257 NIWQHIRHTGIARVLFPTCNPNSYLISAAMRNTDERIKNGLSV 299
>gi|121997474|ref|YP_001002261.1| poly(A) polymerase [Halorhodospira halophila SL1]
gi|121588879|gb|ABM61459.1| poly(A) polymerase [Halorhodospira halophila SL1]
Length = 411
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 21/260 (8%)
Query: 2 LNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---------- 51
L R PKDFD+ T A +EV ++F C ++G+RF + HVHF I+EV++F
Sbjct: 11 LGREPKDFDVATDARPEEVRKLFRNCRLIGRRFRLAHVHFGAEIIEVATFRALHPPEDSE 70
Query: 52 --STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
G R + + + G +D L+RDFT+N L ++ + D+ GG+
Sbjct: 71 GDDADGERVIENGRIVRDNVYGTLAED------ALRRDFTVNALYYNIDDFSVVDHAGGM 124
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
+D+ ++ + +QED R+LRA+R A +LGFR +TA + ++ S+ +
Sbjct: 125 DDLEDGIIRLIGDPHERYQEDPVRMLRAVRFALKLGFRIHPQTAAPMHDMADSVADMPPA 184
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSN 229
RL E + G A + +L +GL E LLP+ A L + G ++ + + N
Sbjct: 185 RLFDEALKLFMSGDALDAFEMLRHYGLFESLLPLTAEALEEEG---SEQWVPFIAAALRN 241
Query: 230 LDKLLAPDRPCHSSLWIAIL 249
D+ + D+P + A L
Sbjct: 242 TDERIGADKPVTPAFLFAAL 261
>gi|110833201|ref|YP_692060.1| poly(A) polymerase [Alcanivorax borkumensis SK2]
gi|110646312|emb|CAL15788.1| poly(A) polymerase [Alcanivorax borkumensis SK2]
Length = 459
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 130/257 (50%), Gaps = 11/257 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+ R PKDFD+ T+A ++V R+F + I+G+RF I HV F ++EVS+F ++
Sbjct: 70 LCGREPKDFDVSTNATPEQVQRLFKRSRIIGRRFQIVHVRFGREVIEVSTFRAKASDDNQ 129
Query: 61 D-FKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D K+ G +D W + L+RDFTIN L ++ ++D++G +EDI +
Sbjct: 130 DRNKHHAHEETGMVLRDNT-WGSIEEDALRRDFTINALYYNIADFSLHDFVGSMEDIDQE 188
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + F+ED R+LRA R AA+LGF + TA + ++ +L++ RL E+
Sbjct: 189 TIRLIGDPEQRFREDPVRMLRAARFAAKLGFEIEKSTASRIPDMAELLLQVPSARLFDEV 248
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLP-IQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLL 234
+ G A AS L + GL L P Q A G +LL+ N D+ L
Sbjct: 249 LKLFLSGHARASYEQLQELGLFRFLFPETQQALEGDQG----KTWEAMLLAAMDNTDRRL 304
Query: 235 APDRPCHSSLWIAILAF 251
D+P + A+L +
Sbjct: 305 LMDKPVTPAFIYAVLLW 321
>gi|291613415|ref|YP_003523572.1| poly(A) polymerase [Sideroxydans lithotrophicus ES-1]
gi|291583527|gb|ADE11185.1| poly(A) polymerase [Sideroxydans lithotrophicus ES-1]
Length = 447
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 129/266 (48%), Gaps = 28/266 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L+R PKDFD+ T A +EV RVF + I+G+RF + HV F VEVS+F
Sbjct: 66 LLDRQPKDFDVATDATPEEVKRVFRRARIIGRRFRLVHVMFGEETVEVSTFRRAIDAEDA 125
Query: 52 -STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+ R RD ++ G E+D R RDFT NGL +DP + I+DY G E
Sbjct: 126 ETDEHGRILRDNEF------GDQEQDAAR------RDFTANGLFYDPATQEIFDYHHGYE 173
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
DIR ++ + ++ED R+LRA+R++A+LG + TA + + + + R
Sbjct: 174 DIRANTLRMIGDPEVRYREDPVRMLRAVRLSAKLGMKLDPATAAPISKMKELLSNVPEAR 233
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L EM +L G A ++ L L +LP+ L + ++ N
Sbjct: 234 LFDEMLKLLLSGQALPCIKKLRAMELHHGMLPMLDVIL------EQPMGEKFVMLALQNT 287
Query: 231 DKLLAPDRPCHSSLWIAILAFHKALS 256
D+ +A ++P + A L +H+ L+
Sbjct: 288 DQRIAEEKPTSPAFLFAALLWHEVLA 313
>gi|387774217|ref|ZP_10129489.1| polynucleotide adenylyltransferase [Haemophilus parahaemolyticus
HK385]
gi|386902361|gb|EIJ67202.1| polynucleotide adenylyltransferase [Haemophilus parahaemolyticus
HK385]
Length = 477
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 115/214 (53%), Gaps = 3/214 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFDI T+A +EV ++F QC +VG+RF + H+ + I EV++F +
Sbjct: 76 LLGKKPKDFDISTNARPEEVQKIFGRQCRLVGRRFRLAHIMYGREIFEVATFRAGHENHT 135
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + + +RDF++N +DP +IYD+ GIE++R K+
Sbjct: 136 NDKISKVSDEGMLLRDNVYGTLFEDAGRRDFSVNAFYYDPRHNLIYDFFNGIEELRAGKL 195
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + + +QED R+LRAIR A+L +ET +K L+P + K+ RL E
Sbjct: 196 RLLGEPTQRYQEDPVRMLRAIRFMAKLDMFLDKETEAPIKTLAPLLSKIPAARLFDESLK 255
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
+L G+ + LL ++ L E L P+ + +H
Sbjct: 256 LLQSGTGFKTYELLREYHLFEQLFPVLTPFFTEH 289
>gi|194365293|ref|YP_002027903.1| poly(A) polymerase [Stenotrophomonas maltophilia R551-3]
gi|194348097|gb|ACF51220.1| poly(A) polymerase [Stenotrophomonas maltophilia R551-3]
Length = 461
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 127/254 (50%), Gaps = 14/254 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++N PKDFD+ T A ++V ++F C ++G+RF + HV F I+EV++F + S
Sbjct: 69 LVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSG 128
Query: 61 DFKYEF-----ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D + E + G E D IR RDFT N L + + DY GG ED++
Sbjct: 129 DREMENGMLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYTGGFEDVQAR 182
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + +QED R+LRA+R+AA+LGF+ TA + L+ + + RL E+
Sbjct: 183 LMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQIEEGTAAPIPQLASLLNEAAPARLFEEV 242
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G AS L ++GLL+VL P A L + R +L+ +N D +A
Sbjct: 243 LKLFLSGHGVASFEGLERYGLLDVLFPESAKALKSN---RTGALRRMLVEGLANTDARVA 299
Query: 236 PDRPCHSSLWIAIL 249
D P + A+L
Sbjct: 300 NDEPVSPAFLFALL 313
>gi|400756803|ref|NP_954291.2| nucleic acid-independent polyadenylating polymerase [Geobacter
sulfurreducens PCA]
gi|409913685|ref|YP_006892150.1| nucleic acid-independent polyadenylating polymerase [Geobacter
sulfurreducens KN400]
gi|298507269|gb|ADI85992.1| nucleic acid-independent polyadenylating polymerase [Geobacter
sulfurreducens KN400]
gi|399108114|gb|AAR36641.2| nucleic acid-independent polyadenylating polymerase [Geobacter
sulfurreducens PCA]
Length = 459
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 135/286 (47%), Gaps = 37/286 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFD+ T A ++ R+F C +VG+RF + H+HF + I+EV++F R S
Sbjct: 53 LLGREPKDFDVATDATPNQIKRIFRNCRLVGRRFRLAHIHFTDEIIEVATF----RALSP 108
Query: 61 DFKYEFERPI-------GCDEKDFIR---------------------WRNCLQRDFTING 92
+ E E P+ G DE + +R + L+RDFT+N
Sbjct: 109 PEQGEGE-PVADETGQRGGDEAERLRPPRHLVSDEGMVLRDNVFGTPGEDALRRDFTVNA 167
Query: 93 LMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRET 152
L + I DY GG+ED+++ ++T+ F ED R+LRA+R AA LGF ET
Sbjct: 168 LAYCIADFSIIDYAGGMEDLQRGMIRTIGDPRVRFTEDPVRMLRAVRFAAVLGFAVEEET 227
Query: 153 AHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ L+P+I + RL EM + G E + +LL + GL L P A+L +
Sbjct: 228 WQAMLDLAPAITRATAPRLYEEMLKLFLSGEGERAYQLLRQTGLFAHLFPGFEAWLGEET 287
Query: 213 FRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQ 258
R+ S +D + P L +A+L F L +Q
Sbjct: 288 DGFPHARTG---SALEWVDSQVGSGEPVSPPLLLALL-FGGYLEEQ 329
>gi|222054332|ref|YP_002536694.1| poly(A) polymerase [Geobacter daltonii FRC-32]
gi|221563621|gb|ACM19593.1| poly(A) polymerase [Geobacter daltonii FRC-32]
Length = 451
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 30/227 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI+T A ++ ++F C ++G+RF + H+HF++ I+EV++F R +R
Sbjct: 50 LLGREPKDFDIVTDATPLQIKKMFRNCRLIGRRFRLAHLHFQDEIIEVATF-----RSAR 104
Query: 61 DFKYEFERPIGCDE----------------KDFIRWRN---------CLQRDFTINGLMF 95
E P DE +D + R+ ++RDFT+N L +
Sbjct: 105 LDDVPAEEPAAMDESEGHTLTGRSPLLLKSEDGMVLRDNIFGTPAEDAVRRDFTVNALAY 164
Query: 96 DPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHF 155
+ + DY+GG++D+++ ++T+ + F ED R++RA+R AA LGFR T
Sbjct: 165 NISDFSLIDYVGGLDDLQRGVIRTIGDSGIRFVEDPVRMIRAVRFAAMLGFRVEETTWQT 224
Query: 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
+ LSP++ K RL E+ + G+ E + +LL + G+ L P
Sbjct: 225 ILELSPTVTKASPPRLYEEVLKLFLLGAGERTYQLLRQSGIFSALFP 271
>gi|46446942|ref|YP_008307.1| Poly(A) polymerase [Candidatus Protochlamydia amoebophila UWE25]
gi|46400583|emb|CAF24032.1| putative Poly(A) polymerase [Candidatus Protochlamydia amoebophila
UWE25]
Length = 424
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 115/203 (56%), Gaps = 10/203 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L R+PKDFDI TSA +++ +F QC ++G+RF + H+ F + I+EVS+F T G S
Sbjct: 47 LLKRVPKDFDISTSARPEQIKAIFQRQCILIGRRFRLAHIRFGHKIIEVSTFRT-GENDS 105
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
++ E G E+D +R RDFTINGL +D I DY+ G ED++K ++T
Sbjct: 106 GLILHDNE--WGTPEEDVLR------RDFTINGLFYDSSNHSIIDYVNGWEDVQKHLLRT 157
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ F++D R+LR ++ AR F+ +T + I K R+L E+ ML
Sbjct: 158 IGEPEKRFKQDPVRLLRLLKFHARYNFKIEEQTEQAIHVCRIEITKSSPARILEEILRML 217
Query: 180 AYGSAEASLRLLWKFGLLEVLLP 202
G++ ++LL ++G+L +L P
Sbjct: 218 ESGASAPFIKLLAEYGILNILFP 240
>gi|319786655|ref|YP_004146130.1| poly(A) polymerase [Pseudoxanthomonas suwonensis 11-1]
gi|317465167|gb|ADV26899.1| poly(A) polymerase [Pseudoxanthomonas suwonensis 11-1]
Length = 478
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 131/264 (49%), Gaps = 17/264 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST-----SG 55
+L PKDFD+ T A ++V ++F C ++G+RF + HV + I+EV++F SG
Sbjct: 89 LLGMHPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVYGREIIEVATFRANVDDGSG 148
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
R D + + G E D +R RDFT N L + + DY GG ED+
Sbjct: 149 DREVEDGRLVRDNVYGTIEDDAVR------RDFTCNALYYAIEDFSVRDYTGGYEDVLAR 202
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
K++ + T ++ED R+LRA+R+AA+LGF TA + L+ + + RL EM
Sbjct: 203 KMRLIGDPETRYREDPVRMLRAVRLAAKLGFSIDPPTAEPIPRLAGLLAEAAPARLFEEM 262
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G A AS L + GLL L+P AA L + R ++L + D +A
Sbjct: 263 LKLFLSGHAVASFEGLERHGLLGALMPETAAALRSN---RSGALRRMVLKGLAGTDARVA 319
Query: 236 PDRPCHSSLWIAIL---AFHKALS 256
D P + A+L A+ +AL+
Sbjct: 320 ADEPVSPAFLFALLLWPAYCRALA 343
>gi|365921176|ref|ZP_09445469.1| putative polynucleotide adenylyltransferase [Cardiobacterium
valvarum F0432]
gi|364576675|gb|EHM53988.1| putative polynucleotide adenylyltransferase [Cardiobacterium
valvarum F0432]
Length = 440
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/253 (30%), Positives = 125/253 (49%), Gaps = 11/253 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +EV +F C ++G+RF + HVHF I+EV++F R +R
Sbjct: 52 LLGKRPKDFDIATNARPEEVAAIFRNCRLIGRRFRLAHVHFGRDIIEVATFRAPPERLAR 111
Query: 61 DFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ + G E D +R RDFTIN L +D + DY+G + DI +
Sbjct: 112 TDSFGSVLEDNHYGSIEDDAVR------RDFTINALYYDVKNDELRDYVGALADIEARII 165
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +T + ED R+LRA R AA+LG T + ++ + RL E
Sbjct: 166 RIIGDPATRYTEDPVRMLRAARFAAKLGMPLEAATEAAIADCRDNLRAVPAARLFDEAQK 225
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLLAP 236
+ G EA +L ++GL +L P A ++ +H + + L+ + +N D +A
Sbjct: 226 LFMSGYGEACFEVLQRYGLFAMLFP-DAGHVFEHPNAAYAQYAQRLVRIALANTDARVAE 284
Query: 237 DRPCHSSLWIAIL 249
D+P + +A +
Sbjct: 285 DKPVTIAFLLAAI 297
>gi|397166822|ref|ZP_10490266.1| poly(A) polymerase [Enterobacter radicincitans DSM 16656]
gi|396091910|gb|EJI89476.1| poly(A) polymerase [Enterobacter radicincitans DSM 16656]
Length = 454
Score = 124 bits (310), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 128/263 (48%), Gaps = 6/263 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA +V ++F C +VG+RF + HV F I+EV++F
Sbjct: 62 LLGKKPKDFDVTTSATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHDEQQT 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG+ D+ + +
Sbjct: 122 DRSISQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMRDLEEGVI 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+LG R S ETA + L+ I + RL E
Sbjct: 182 RLIGNPETRYREDPVRMLRAVRFAAKLGMRISEETAEPIPRLATLINDVPPARLFEESLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + RLL ++GL + L P Y + G ++ ++ + N D + D
Sbjct: 242 LLQAGYGYDTCRLLREYGLFQPLFPTITRYFTEKGDSPMER---IIEQVLKNTDNRIHND 298
Query: 238 RPCHSSLWIAILAFHKALSDQPR 260
+ + A + ++ L D R
Sbjct: 299 MRVNPAFLFAAMFWYPLLEDAQR 321
>gi|397663979|ref|YP_006505517.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila]
gi|395127390|emb|CCD05582.1| poly(A) polymerase I [Legionella pneumophila subsp. pneumophila]
Length = 423
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 128/255 (50%), Gaps = 18/255 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L++ PKDFDI T+A E+ +F I+G+RF + H+ F I+EV++F S +
Sbjct: 46 LLHKAPKDFDIATNATPNEIKNLFKNARIIGRRFKLVHILFHREIIEVATFRGHNSSDAS 105
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+F+ + G ++D WR RDFTIN L ++ I D+ GG+ED+++
Sbjct: 106 HQFNERGMLVRDNVYGSLDED--AWR----RDFTINSLYYNISDSSIIDFTGGVEDVKQK 159
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T +QED R+LRA+R +A+L F S ET +S I + RL E+
Sbjct: 160 LIRIIGDPVTRYQEDPVRMLRAVRFSAKLQFNLSPETKAPFPKISHLITHVSSSRLFDEI 219
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLL 234
+ G AE+ +LL ++GL L P AA H N LL + N D +
Sbjct: 220 TKLYQCGEAESVQKLLVEYGLFNYLFPQTAALFDSH------YPVNPLLGIALENTDTRI 273
Query: 235 APDRPCHSSLWIAIL 249
+P + +A+L
Sbjct: 274 RDGKPVTPAFLVAVL 288
>gi|15835306|ref|NP_297065.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
gi|270285478|ref|ZP_06194872.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
gi|270289489|ref|ZP_06195791.1| poly(A) polymerase family protein [Chlamydia muridarum Weiss]
gi|301336875|ref|ZP_07225077.1| poly(A) polymerase family protein [Chlamydia muridarum MopnTet14]
gi|7190722|gb|AAF39507.1| poly(A) polymerase family protein [Chlamydia muridarum Nigg]
Length = 425
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 114/202 (56%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ TSA+ +EV +F C +VGKRF + H+ F N I+EVS+F +
Sbjct: 71 LLKTEPKDFDVSTSAKPEEVKALFKNCILVGKRFRLAHIRFPNQIIEVSTFRSGSNE--E 128
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP +++I DY GG+ED++ ++T+
Sbjct: 129 DSLITKDNLWGSAEEDVLR------RDFTINGLFYDPSSEVIIDYTGGVEDLKNRYLRTI 182
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I +R F +T ++ ++K + R+ E+ +L+
Sbjct: 183 GDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALRESRHELIKSSQPRVFEELIKVLS 242
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G + +L ++ +LE+L P
Sbjct: 243 SGESTIFFQLASEYRILEILFP 264
>gi|237804757|ref|YP_002888911.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT]
gi|376282416|ref|YP_005156242.1| polyA polymerase [Chlamydia trachomatis A2497]
gi|385270103|ref|YP_005813263.1| Poly(A) polymerase [Chlamydia trachomatis A2497]
gi|231273057|emb|CAX09970.1| polyA polymerase [Chlamydia trachomatis B/TZ1A828/OT]
gi|347975243|gb|AEP35264.1| Poly(A) polymerase [Chlamydia trachomatis A2497]
gi|371908446|emb|CAX09076.1| polyA polymerase [Chlamydia trachomatis A2497]
gi|438690340|emb|CCP49597.1| poly(A) polymerase I [Chlamydia trachomatis A/7249]
gi|438691424|emb|CCP48698.1| poly(A) polymerase I [Chlamydia trachomatis A/5291]
gi|438692797|emb|CCP47799.1| poly(A) polymerase I [Chlamydia trachomatis A/363]
Length = 425
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI TSA+ +EV +F C +VGKRF + H+ F N I+EV++F +
Sbjct: 71 LLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAHIRFPNQIIEVATFRSGSNE--E 128
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP A+II DY GG+ED++ ++T+
Sbjct: 129 DSLITKDNLWGSAEEDVLR------RDFTINGLFYDPSAEIIIDYTGGVEDLKNRYLKTI 182
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I +R F +T ++ ++K + R+ E+ +L+
Sbjct: 183 GDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALQESCHELVKSSQPRVFEEIIKVLS 242
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQA 205
G + +L + +LE+L P A
Sbjct: 243 SGESTIFFQLASEHRVLEILFPYMA 267
>gi|303256720|ref|ZP_07342734.1| poly(A) polymerase [Burkholderiales bacterium 1_1_47]
gi|302860211|gb|EFL83288.1| poly(A) polymerase [Burkholderiales bacterium 1_1_47]
Length = 468
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 131/237 (55%), Gaps = 11/237 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++ PKDFD+ T A +EV +V + I+G+RF + HV+ +EV++F R F++
Sbjct: 53 LIGAKPKDFDVATDATPEEVKKVTRRAIIIGRRFRLVHVNKGAETIEVATF----RGFAK 108
Query: 61 DFKYEFERPIGCDEKDFI-RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ E + ++ F ++ + +RDFT+N + FDP + +YDY G++DIR+ K++
Sbjct: 109 QGVTKDEDGVITNDNVFGEQYEDAARRDFTVNAMYFDPISGDLYDYHHGLDDIRERKIRM 168
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ +T ++ED RILRAIRIAA+LGF +TA + ++ +L + RL E + M+
Sbjct: 169 IGDPATRYREDPVRILRAIRIAAKLGFTIDEKTAAPMHYMQTLLLSVPSARLADEFSKMV 228
Query: 180 AYGSAEASLRLLWKFG------LLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
GSA A + L+ ++ L +VL V+ G R D R L S+ ++
Sbjct: 229 LSGSAVACMELMNRYDINIPIPLFDVLKRTFGLPFVRKGLERCDARVALGKSISTSF 285
>gi|190573757|ref|YP_001971602.1| poly(A) polymerase [Stenotrophomonas maltophilia K279a]
gi|424668174|ref|ZP_18105199.1| poly(A) polymerase [Stenotrophomonas maltophilia Ab55555]
gi|190011679|emb|CAQ45298.1| putative poly(A) polymerase [Stenotrophomonas maltophilia K279a]
gi|401068436|gb|EJP76960.1| poly(A) polymerase [Stenotrophomonas maltophilia Ab55555]
gi|456734161|gb|EMF58983.1| Poly(A) polymerase [Stenotrophomonas maltophilia EPM1]
Length = 461
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 127/254 (50%), Gaps = 14/254 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++N PKDFD+ T A ++V ++F C ++G+RF + HV F I+EV++F + S
Sbjct: 69 LVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSG 128
Query: 61 DFKYEF-----ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D + E + G E D +R RDFT N L + + DY GG ED++
Sbjct: 129 DREMENGMLVRDNVYGTIEDDAVR------RDFTCNALYYAIEDFSVRDYTGGFEDVQAR 182
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + +QED R+LRA+R+AA+LGF+ TA + L+ + + RL E+
Sbjct: 183 LMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQIEEGTAAPIPQLAGLLNEAAPARLFEEV 242
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G AS L ++GLL+VL P A L + R +L+ +N D +A
Sbjct: 243 LKLFLSGHGVASFEGLERYGLLDVLFPESARALKSN---RTGALRRMLVEGLANTDARVA 299
Query: 236 PDRPCHSSLWIAIL 249
D P + A+L
Sbjct: 300 NDEPVSPAFLFALL 313
>gi|388456398|ref|ZP_10138693.1| poly(A) polymerase [Fluoribacter dumoffii Tex-KL]
Length = 452
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 134/276 (48%), Gaps = 26/276 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFD+ T A +V +F I+G+RF + H+ F I+EV++F G
Sbjct: 71 LLHKAPKDFDVATDATPNQVKSLFRNGRIIGRRFKLVHILFHREIIEVATFR--GHAAVD 128
Query: 61 DFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ + ER + G ++D WR RDFTIN L ++ I D+ GG++D+
Sbjct: 129 ESQQTNERGMLVRDNAYGSLDED--AWR----RDFTINSLYYNINDSTIIDFTGGVKDVE 182
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+ ++ + +QED R+LRAIR +A+L F+ + ET +S I + RL
Sbjct: 183 QKLIRMIGDPVKRYQEDPVRMLRAIRFSAKLNFKLAPETEAPFPEISHLITHVSNSRLFD 242
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
EM + G+AEA RLL ++GL + L P Q L+ + + LL N D
Sbjct: 243 EMTKLYQCGNAEAVQRLLMQYGLFQYLCP-QTHSLLNSSY----PVTALLAIALENTDTR 297
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+ D+P + LW ++ K L DPL
Sbjct: 298 IREDKPVTPAFLFAVLLWFPMIECSKELQKTGIDPL 333
>gi|330999362|ref|ZP_08323079.1| poly(A) polymerase [Parasutterella excrementihominis YIT 11859]
gi|329575220|gb|EGG56771.1| poly(A) polymerase [Parasutterella excrementihominis YIT 11859]
Length = 479
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 131/237 (55%), Gaps = 11/237 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++ PKDFD+ T A +EV +V + I+G+RF + HV+ +EV++F R F++
Sbjct: 64 LIGAKPKDFDVATDATPEEVKKVTRRAIIIGRRFRLVHVNKGAETIEVATF----RGFAK 119
Query: 61 DFKYEFERPIGCDEKDFI-RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ E + ++ F ++ + +RDFT+N + FDP + +YDY G++DIR+ K++
Sbjct: 120 QGVTKDEDGVITNDNVFGEQYEDAARRDFTVNAMYFDPISGDLYDYHHGLDDIRERKIRM 179
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ +T ++ED RILRAIRIAA+LGF +TA + ++ +L + RL E + M+
Sbjct: 180 IGDPATRYREDPVRILRAIRIAAKLGFTIDEKTAAPMHYMQTLLLSVPSARLADEFSKMV 239
Query: 180 AYGSAEASLRLLWKFG------LLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
GSA A + L+ ++ L +VL V+ G R D R L S+ ++
Sbjct: 240 LSGSAVACMELMNRYDINIPIPLFDVLKRTFGLPFVRKGLERCDARVALGKSISTSF 296
>gi|255311216|ref|ZP_05353786.1| polyA polymerase [Chlamydia trachomatis 6276]
gi|255317518|ref|ZP_05358764.1| polyA polymerase [Chlamydia trachomatis 6276s]
gi|440525329|emb|CCP50580.1| poly(A) polymerase I [Chlamydia trachomatis K/SotonK1]
gi|440533363|emb|CCP58873.1| poly(A) polymerase I [Chlamydia trachomatis Ia/SotonIa1]
gi|440534257|emb|CCP59767.1| poly(A) polymerase I [Chlamydia trachomatis Ia/SotonIa3]
Length = 425
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI TSA+ +EV +F C +VGKRF + H+ F N I+EV++F +
Sbjct: 71 LLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAHIRFPNQIIEVATFRSGSNE--E 128
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP A+II DY GG+ED++ ++T+
Sbjct: 129 DSLITKDNLWGSAEEDVLR------RDFTINGLFYDPSAEIIIDYTGGVEDLKNRYLRTI 182
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I +R F +T ++ ++K + R+ E+ +L+
Sbjct: 183 GDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALQESCHELVKSSQPRVFEEIIKVLS 242
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQA 205
G + +L + +LE+L P A
Sbjct: 243 SGESTIFFQLASEHRVLEILFPYMA 267
>gi|15605135|ref|NP_219920.1| polyA polymerase [Chlamydia trachomatis D/UW-3/CX]
gi|385239926|ref|YP_005807768.1| polyA polymerase [Chlamydia trachomatis G/9768]
gi|385240850|ref|YP_005808691.1| polyA polymerase [Chlamydia trachomatis G/11222]
gi|385242704|ref|YP_005810543.1| polyA polymerase [Chlamydia trachomatis G/9301]
gi|385243617|ref|YP_005811463.1| Poly(A) polymerase [Chlamydia trachomatis D-EC]
gi|385244497|ref|YP_005812341.1| Poly(A) polymerase [Chlamydia trachomatis D-LC]
gi|385246313|ref|YP_005815135.1| polyA polymerase [Chlamydia trachomatis G/11074]
gi|3328838|gb|AAC68007.1| PolyA Polymerase [Chlamydia trachomatis D/UW-3/CX]
gi|296435931|gb|ADH18105.1| polyA polymerase [Chlamydia trachomatis G/9768]
gi|296436858|gb|ADH19028.1| polyA polymerase [Chlamydia trachomatis G/11222]
gi|296437792|gb|ADH19953.1| polyA polymerase [Chlamydia trachomatis G/11074]
gi|297140292|gb|ADH97050.1| polyA polymerase [Chlamydia trachomatis G/9301]
gi|297748540|gb|ADI51086.1| Poly(A) polymerase [Chlamydia trachomatis D-EC]
gi|297749420|gb|ADI52098.1| Poly(A) polymerase [Chlamydia trachomatis D-LC]
gi|440528006|emb|CCP53490.1| poly(A) polymerase I [Chlamydia trachomatis D/SotonD5]
gi|440528896|emb|CCP54380.1| poly(A) polymerase I [Chlamydia trachomatis D/SotonD6]
gi|440532470|emb|CCP57980.1| poly(A) polymerase I [Chlamydia trachomatis G/SotonG1]
Length = 425
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI TSA+ +EV +F C +VGKRF + H+ F N I+EV++F +
Sbjct: 71 LLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAHIRFPNQIIEVATFRSGSNE--E 128
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP A+II DY GG+ED++ ++T+
Sbjct: 129 DSLITKDNLWGSAEEDVLR------RDFTINGLFYDPSAEIIIDYTGGVEDLKNRYLRTI 182
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I +R F +T ++ ++K + R+ E+ +L+
Sbjct: 183 GDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALQESCHELVKSSQPRVFEEIIKVLS 242
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQA 205
G + +L + +LE+L P A
Sbjct: 243 SGESTIFFQLASEHRVLEILFPYMA 267
>gi|406987425|gb|EKE07779.1| hypothetical protein ACD_17C00519G0002 [uncultured bacterium]
Length = 418
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 121/235 (51%), Gaps = 24/235 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR--- 57
+LN+ PKDFD+ TSA+ E+ +F ++G+RF + H+ F ++EVS+F +
Sbjct: 47 LLNKSPKDFDVSTSAKPDEIKLLFRNAILIGRRFRLAHIRFGKKVIEVSTFRSGSIEEAG 106
Query: 58 -FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
RD ++ G +E+D +R RDFTINGL +DP + + DY+ G DI K
Sbjct: 107 LIVRDNEW------GNEEQDVLR------RDFTINGLFYDPENQKVIDYVDGYPDIEKGI 154
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + F +D R++R I+ AR F + T + + ILK R+ E+
Sbjct: 155 LRAIGQPEVRFTQDPVRMIRLIKFCARFNFEIHKPTFSALLNCKGEILKSSSARIFEELL 214
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
ML G++++ LL ++GLL+ L P + YL R N++L L +D
Sbjct: 215 RMLESGASQSFFHLLNEYGLLKALSPTLSHYLA--------ARDNVVLQLLGVID 261
>gi|255348775|ref|ZP_05380782.1| polyA polymerase [Chlamydia trachomatis 70]
gi|255503315|ref|ZP_05381705.1| polyA polymerase [Chlamydia trachomatis 70s]
gi|255506994|ref|ZP_05382633.1| polyA polymerase [Chlamydia trachomatis D(s)2923]
gi|385241781|ref|YP_005809621.1| polyA polymerase [Chlamydia trachomatis E/11023]
gi|385245388|ref|YP_005814211.1| polyA polymerase [Chlamydia trachomatis E/150]
gi|386262764|ref|YP_005816043.1| polyA polymerase [Chlamydia trachomatis Sweden2]
gi|389858103|ref|YP_006360345.1| polyA polymerase [Chlamydia trachomatis F/SW4]
gi|389858979|ref|YP_006361220.1| polyA polymerase [Chlamydia trachomatis E/SW3]
gi|389859855|ref|YP_006362095.1| polyA polymerase [Chlamydia trachomatis F/SW5]
gi|289525452|emb|CBJ14929.1| polyA polymerase [Chlamydia trachomatis Sweden2]
gi|296435004|gb|ADH17182.1| polyA polymerase [Chlamydia trachomatis E/150]
gi|296438724|gb|ADH20877.1| polyA polymerase [Chlamydia trachomatis E/11023]
gi|380249175|emb|CCE14467.1| polyA polymerase [Chlamydia trachomatis F/SW5]
gi|380250050|emb|CCE13578.1| polyA polymerase [Chlamydia trachomatis F/SW4]
gi|380250928|emb|CCE12689.1| polyA polymerase [Chlamydia trachomatis E/SW3]
gi|440527114|emb|CCP52598.1| poly(A) polymerase I [Chlamydia trachomatis D/SotonD1]
gi|440529788|emb|CCP55272.1| poly(A) polymerase I [Chlamydia trachomatis E/SotonE4]
gi|440530687|emb|CCP56171.1| poly(A) polymerase I [Chlamydia trachomatis E/SotonE8]
gi|440531578|emb|CCP57088.1| poly(A) polymerase I [Chlamydia trachomatis F/SotonF3]
gi|440535155|emb|CCP60665.1| poly(A) polymerase I [Chlamydia trachomatis E/Bour]
Length = 425
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI TSA+ +EV +F C +VGKRF + H+ F N I+EV++F +
Sbjct: 71 LLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAHIRFPNQIIEVATFRSGSNE--E 128
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP A+II DY GG+ED++ ++T+
Sbjct: 129 DSLITKDNLWGSAEEDVLR------RDFTINGLFYDPSAEIIIDYTGGVEDLKNRYLRTI 182
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I +R F +T ++ ++K + R+ E+ +L+
Sbjct: 183 GDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALQESRHELVKSSQPRVFEEIIKVLS 242
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQA 205
G + +L + +LE+L P A
Sbjct: 243 SGESTIFFQLASEHRVLEILFPYMA 267
>gi|386388632|ref|ZP_10073489.1| polynucleotide adenylyltransferase [Haemophilus
paraphrohaemolyticus HK411]
gi|385697483|gb|EIG27906.1| polynucleotide adenylyltransferase [Haemophilus
paraphrohaemolyticus HK411]
Length = 477
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 113/214 (52%), Gaps = 3/214 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFDI T+A +EV ++F QC +VG+RF + H+ + I EV++F +
Sbjct: 76 LLGKKPKDFDISTNARPEEVQKIFGRQCRLVGRRFRLAHIMYGREIFEVATFRAGHENHT 135
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + + +RDF++N +DP +IYD+ G+ED+R K+
Sbjct: 136 NDKISKVSDEGMLLRDNVYGTLFEDAGRRDFSVNAFYYDPRHNLIYDFFNGVEDLRAGKL 195
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + + +QED R+LRA+R A+L +ET +K L+P + + RL E
Sbjct: 196 RLLGEPTQRYQEDPVRMLRAVRFMAKLDMFLDKETEAPIKTLAPLLGNIPTARLFDESLK 255
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
+L G+ + LL ++ L E L P+ + H
Sbjct: 256 LLQSGTGFKTYELLREYHLFEQLFPVLTPFFTDH 289
>gi|227358020|ref|ZP_03842362.1| polynucleotide adenylyltransferase [Proteus mirabilis ATCC 29906]
gi|227161755|gb|EEI46787.1| polynucleotide adenylyltransferase [Proteus mirabilis ATCC 29906]
Length = 507
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 16/221 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------ST 53
+L + PKDFDI T+A +EV R+F +VG+RF + H+ F ++EV++F T
Sbjct: 106 LLGKKPKDFDIATNATPEEVRRLFRNSRLVGRRFRLAHIMFGPEVIEVATFRGSHEDHET 165
Query: 54 SGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
S R S+ + + G E+D IR RDFT+N L + + DY+GG+
Sbjct: 166 SDRNQSQQAQSGMLLRDNIFGSIEEDAIR------RDFTLNSLYYGVDDFAVRDYVGGLA 219
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D++ ++ + T ++ED R+LRAIR A++L R + ETA + L+P + + R
Sbjct: 220 DLKSGTIRLIGSPETRYREDPVRMLRAIRFASKLDMRIAPETAEPISQLAPLLRNIPSAR 279
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
L E +L G + RL+ F LLE L P+ A+ + +
Sbjct: 280 LFEESLKLLQTGHGYKTYRLMRHFQLLEPLFPLVASRITEQ 320
>gi|372273042|ref|ZP_09509090.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacterium
stanieri S30]
Length = 492
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 143/302 (47%), Gaps = 25/302 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTS------ 54
++ + PKDFDI TSA ++ V +F + ++G+RF + HV F I+EV++F S
Sbjct: 99 LMQKQPKDFDIATSAHPEQAVELFRRGRLIGRRFKLLHVRFGREIIEVATFRASHNHDKA 158
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
G+ +R + G E+D L+RDFT+N L +D + D+ G D
Sbjct: 159 GKDNARTADTGMIVRDNVYGTIEED------ALRRDFTVNALYYDAKDHSLIDFANGYRD 212
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
I+ ++ + AS ++ED R++RA R AA+LGF +TA + L+P + + RL
Sbjct: 213 IQDRCLRMIGDASERYREDPVRMIRAARFAAKLGFEIEPDTARPIHELAPLMRNVAPARL 272
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E+ +L G EAS R L +FGL + L P+ L + L+++ N D
Sbjct: 273 FDEVLKLLQSGHGEASFRQLRRFGLFQYLFPLTDEALDDEDY----PVETLVVNALCNTD 328
Query: 232 KLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIA 285
+ LA + + LW + + L D+ P V + A + ++ I
Sbjct: 329 RRLAQGKSVTPAFLFAALLWYPLQRRMQELEDETDLPPVPRLHEAANQVLAEQVKHTAIP 388
Query: 286 RR 287
RR
Sbjct: 389 RR 390
>gi|76789141|ref|YP_328227.1| polyA polymerase [Chlamydia trachomatis A/HAR-13]
gi|76167671|gb|AAX50679.1| polyA polymerase [Chlamydia trachomatis A/HAR-13]
Length = 425
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI TSA+ +EV +F C +VGKRF + H+ F N I+EV++F +
Sbjct: 71 LLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAHIRFPNQIIEVATFRSGSNE--E 128
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP A+II DY GG+ED++ ++T+
Sbjct: 129 DSLITKDNLWGSAEEDVLR------RDFTINGLFYDPSAEIIIDYTGGVEDLKSRYLRTI 182
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I +R F +T ++ ++K + R+ E+ +L+
Sbjct: 183 GDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALQESCHELVKSSQPRVFEEIIKVLS 242
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQA 205
G + +L + +LE+L P A
Sbjct: 243 SGESTIFFQLASEHRVLEILFPYMA 267
>gi|339626084|ref|YP_004717563.1| poly(A) polymerase family protein [Chlamydia trachomatis L2c]
gi|339460742|gb|AEJ77245.1| poly(A) polymerase family protein [Chlamydia trachomatis L2c]
Length = 424
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI TSA+ +EV +F C +VGKRF + H+ F N I+EV++F +
Sbjct: 70 LLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAHIRFPNQIIEVATFRSGSNE--E 127
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP A+II DY GG+ED++ ++T+
Sbjct: 128 DSLITKDNLWGSAEEDVLR------RDFTINGLFYDPSAEIIIDYTGGVEDLKNRYLRTI 181
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I +R F +T ++ ++K + R+ E+ +L+
Sbjct: 182 GDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALQESRHELVKSSQPRVFEEIIKVLS 241
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQA 205
G + +L + +LE+L P A
Sbjct: 242 SGESTIFFQLASEHRVLEILFPYMA 266
>gi|166154621|ref|YP_001654739.1| polyA polymerase [Chlamydia trachomatis 434/Bu]
gi|166155496|ref|YP_001653751.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|301335888|ref|ZP_07224132.1| polyA polymerase [Chlamydia trachomatis L2tet1]
gi|165930609|emb|CAP04106.1| polyA polymerase [Chlamydia trachomatis 434/Bu]
gi|165931484|emb|CAP07060.1| polyA polymerase [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|440526216|emb|CCP51700.1| poly(A) polymerase I [Chlamydia trachomatis L2b/8200/07]
gi|440536041|emb|CCP61554.1| poly(A) polymerase I [Chlamydia trachomatis L2b/795]
gi|440536933|emb|CCP62447.1| poly(A) polymerase I [Chlamydia trachomatis L1/440/LN]
gi|440537823|emb|CCP63337.1| poly(A) polymerase I [Chlamydia trachomatis L1/1322/p2]
gi|440538713|emb|CCP64227.1| poly(A) polymerase I [Chlamydia trachomatis L1/115]
gi|440539602|emb|CCP65116.1| poly(A) polymerase I [Chlamydia trachomatis L1/224]
gi|440540493|emb|CCP66007.1| poly(A) polymerase I [Chlamydia trachomatis L2/25667R]
gi|440541382|emb|CCP66896.1| poly(A) polymerase I [Chlamydia trachomatis L3/404/LN]
gi|440542269|emb|CCP67783.1| poly(A) polymerase I [Chlamydia trachomatis L2b/UCH-2]
gi|440543160|emb|CCP68674.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Canada2]
gi|440544051|emb|CCP69565.1| poly(A) polymerase I [Chlamydia trachomatis L2b/LST]
gi|440544941|emb|CCP70455.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Ams1]
gi|440545831|emb|CCP71345.1| poly(A) polymerase I [Chlamydia trachomatis L2b/CV204]
gi|440914093|emb|CCP90510.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Ams2]
gi|440914983|emb|CCP91400.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Ams3]
gi|440915875|emb|CCP92292.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Canada1]
gi|440916769|emb|CCP93186.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Ams4]
gi|440917659|emb|CCP94076.1| poly(A) polymerase I [Chlamydia trachomatis L2b/Ams5]
Length = 425
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 114/205 (55%), Gaps = 8/205 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI TSA+ +EV +F C +VGKRF + H+ F N I+EV++F +
Sbjct: 71 LLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAHIRFPNQIIEVATFRSGSNE--E 128
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP A+II DY GG+ED++ ++T+
Sbjct: 129 DSLITKDNLWGSAEEDVLR------RDFTINGLFYDPSAEIIIDYTGGVEDLKNRYLRTI 182
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I +R F +T ++ ++K + R+ E+ +L+
Sbjct: 183 GDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALQESRHELVKSSQPRVFEEIIKVLS 242
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQA 205
G + +L + +LE+L P A
Sbjct: 243 SGESTIFFQLASEHRVLEILFPYMA 267
>gi|339327137|ref|YP_004686830.1| poly(A) polymerase [Cupriavidus necator N-1]
gi|338167294|gb|AEI78349.1| poly(A) polymerase PcnB [Cupriavidus necator N-1]
Length = 513
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 132/278 (47%), Gaps = 29/278 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A +V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 70 LLGIKPKDFDVATNATPDQVQALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 129
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
GRR R D K G +D + W + +RDFTIN + +DP
Sbjct: 130 AIASETLPEGRRLKRAELDSKTHAIDASGRVLRDNV-WGSQAEDAERRDFTINAMYYDPA 188
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
A+ ++DY G+EDIR ++ + T ++ED R+LR +R AA+ GF T H +
Sbjct: 189 AQTVHDYHHGMEDIRARTLRMIGDPVTRYREDPIRMLRVVRFAAKTGFDIDEATRHPIAG 248
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L+ I + RL EM +L G A ASL+ L K GL + LLP+ L + +R
Sbjct: 249 LASLIHNVPSARLFDEMLKLLMSGHAWASLQELRKAGLHQGLLPLLDVALEQPMGQR--- 305
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
+ N D+ + +P A L +H L
Sbjct: 306 ---FVQLALDNTDRRVQAGKPVSPGFLFAALLWHHVLQ 340
>gi|395647285|ref|ZP_10435135.1| poly(A) polymerase [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 633
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFT+N L +DP ++ I
Sbjct: 127 EEDTNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTVNALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F R TA ++ L+P +
Sbjct: 175 DYANGVHDIRNNLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIERHTAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|404498031|ref|YP_006722137.1| nucleic acid-independent polyadenylating polymerase [Geobacter
metallireducens GS-15]
gi|418067274|ref|ZP_12704622.1| poly(A) polymerase [Geobacter metallireducens RCH3]
gi|78195628|gb|ABB33395.1| nucleic acid-independent polyadenylating polymerase [Geobacter
metallireducens GS-15]
gi|373559152|gb|EHP85461.1| poly(A) polymerase [Geobacter metallireducens RCH3]
Length = 457
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 117/230 (50%), Gaps = 22/230 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFD+ T+A +V R+F C +VG+RF + H+H+++ I+EV++F
Sbjct: 53 LLGREPKDFDVATNATPNQVKRLFRNCRLVGRRFRLAHIHYQDEIIEVATFRALAPEEPE 112
Query: 61 D----------FKYEFERP-----IGCDEKDFIR-------WRNCLQRDFTINGLMFDPY 98
D E ERP + DE +R + ++RDFT+N L ++
Sbjct: 113 DTAPAPVSPENVPGEGERPRLPRHVVSDEGMVLRDNVFGTPEEDAVRRDFTVNALAYNIA 172
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
I DY G+ED+R+ ++T+ F ED R+LRA+R AA LGF T ++
Sbjct: 173 DFSIIDYANGMEDLRRGVIRTIGDPLVRFTEDPVRMLRAVRFAATLGFTVEDATWQAIRE 232
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
L+P+I + RL E+ + G E +LL + GL L P +A+L
Sbjct: 233 LAPAITRATAPRLYEEVLKLFLSGEGERVYQLLRQAGLFSHLFPRFSAWL 282
>gi|197284108|ref|YP_002149980.1| poly(A) polymerase I [Proteus mirabilis HI4320]
gi|425067000|ref|ZP_18470116.1| Poly(A) polymerase [Proteus mirabilis WGLW6]
gi|194681595|emb|CAR40583.1| poly(A) polymerase [Proteus mirabilis HI4320]
gi|404601671|gb|EKB02063.1| Poly(A) polymerase [Proteus mirabilis WGLW6]
Length = 446
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 16/221 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------ST 53
+L + PKDFDI T+A +EV R+F +VG+RF + H+ F ++EV++F T
Sbjct: 45 LLGKKPKDFDIATNATPEEVRRLFRNSRLVGRRFRLAHIMFGPEVIEVATFRGSHEDHET 104
Query: 54 SGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
S R S+ + + G E+D IR RDFT+N L + + DY+GG+
Sbjct: 105 SDRNQSQQAQSGMLLRDNIFGSIEEDAIR------RDFTLNSLYYGVDDFAVRDYVGGLA 158
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D++ ++ + T ++ED R+LRAIR A++L R + ETA + L+P + + R
Sbjct: 159 DLKSGTIRLIGSPETRYREDPVRMLRAIRFASKLDMRIAPETAEPISQLAPLLRNIPSAR 218
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
L E +L G + RL+ F LLE L P+ A+ + +
Sbjct: 219 LFEESLKLLQTGHGYKTYRLMRHFQLLEPLFPLVASRITEQ 259
>gi|425073567|ref|ZP_18476673.1| Poly(A) polymerase [Proteus mirabilis WGLW4]
gi|404594838|gb|EKA95393.1| Poly(A) polymerase [Proteus mirabilis WGLW4]
Length = 446
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 117/221 (52%), Gaps = 16/221 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------ST 53
+L + PKDFDI T+A +EV R+F +VG+RF + H+ F ++EV++F T
Sbjct: 45 LLGKKPKDFDIATNATPEEVRRLFRNSRLVGRRFRLAHIMFGPEVIEVATFRGSHEDHET 104
Query: 54 SGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
S R S+ + + G E+D IR RDFT+N L + + DY+GG+
Sbjct: 105 SDRNQSQQAQSGMLLRDNIFGSIEEDAIR------RDFTLNSLYYGVDDFAVRDYVGGLA 158
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D++ ++ + T ++ED R+LRAIR A++L R + ETA + L+P + + R
Sbjct: 159 DLKSGTIRLIGSPETRYREDPVRMLRAIRFASKLDMRIAPETAEPISQLAPLLRNIPSAR 218
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
L E +L G + RL+ F LLE L P+ A+ + +
Sbjct: 219 LFEESLKLLQTGHGYKTYRLMRHFQLLEPLFPLVASRITEQ 259
>gi|237802835|ref|YP_002888029.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT]
gi|231274069|emb|CAX10863.1| polyA polymerase [Chlamydia trachomatis B/Jali20/OT]
Length = 425
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 113/205 (55%), Gaps = 8/205 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI TSA+ +EV +F C +VGKRF + H+ F N I+EV++F +
Sbjct: 71 LLKTEPKDFDISTSAKPEEVKTLFKNCILVGKRFRLAHIRFPNQIIEVATFRSGSNE--E 128
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP A II DY GG+ED++ ++T+
Sbjct: 129 DSLITKDNLWGSAEEDVLR------RDFTINGLFYDPSAGIIIDYTGGVEDLKNRYLRTI 182
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I +R F +T ++ ++K + R+ E+ +L+
Sbjct: 183 GDPFLRFKQDPVRMLRLLKILSRYAFTVDPKTLEALQESCHELVKSSQPRVFEEIIKVLS 242
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQA 205
G + +L + +LE+L P A
Sbjct: 243 SGESTIFFQLASEHRVLEILFPYMA 267
>gi|54297450|ref|YP_123819.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella
pneumophila str. Paris]
gi|53751235|emb|CAH12646.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
pneumophila str. Paris]
Length = 423
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 127/255 (49%), Gaps = 18/255 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L++ PKDFDI T+A EV +F I+G+RF + H+ F I+EV++F S +
Sbjct: 46 LLHKAPKDFDIATNATPNEVKNLFKNARIIGRRFKLVHILFHREIIEVATFRGHNSSDAS 105
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+F+ + G ++D WR RDFTIN L ++ I D+ G+ED+++
Sbjct: 106 HQFNERGMLVRDNVYGSLDED--AWR----RDFTINSLYYNISDSSIIDFTSGVEDVKQK 159
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T +QED R+LRA+R +A+L F S ET +S I + RL E+
Sbjct: 160 LIRIIGDPVTRYQEDPVRMLRAVRFSAKLQFNLSPETKAPFPKISHLITHVSSSRLFDEI 219
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLL 234
+ G AE+ +LL ++GL L P AA H N LL + N D +
Sbjct: 220 TKLYQCGEAESVQKLLVEYGLFNYLFPQTAALFDSH------YPVNPLLGIALENTDTRI 273
Query: 235 APDRPCHSSLWIAIL 249
+P + IA+L
Sbjct: 274 RDGKPVTPAFLIAVL 288
>gi|411012282|ref|ZP_11388611.1| poly(A) polymerase [Aeromonas aquariorum AAK1]
Length = 469
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 115/215 (53%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T A +++ +FS C ++G+RF + H+ F ++EV++F + +
Sbjct: 67 LLGKTPKDFDIATDATPEQIKSLFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNT 126
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N L + ++D+ GG+ED+ + K+
Sbjct: 127 SKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGLEDLAERKL 186
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S TA +K L+P + + RL E
Sbjct: 187 ELIGDPETRYREDPVRMLRAVRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLK 246
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ G A A+ +LL ++GL + L P AA HG
Sbjct: 247 LFLAGDALATYKLLREYGLFQQLFPQVAALFTPHG 281
>gi|409422639|ref|ZP_11259730.1| poly(A) polymerase [Pseudomonas sp. HYS]
Length = 462
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 112/227 (49%), Gaps = 28/227 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFS-------- 52
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPESEE 126
Query: 53 ----TSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYD 104
TS R R RD Y G E+D R RDFTIN L +DP ++ I D
Sbjct: 127 ENSHTSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERILD 174
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
Y G+ DIR ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 175 YANGVHDIRNRLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKHTVQPIRQLAPMLR 234
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
++ RL E + G A + +L L + L P A L +H
Sbjct: 235 EIPAARLFEESLKLFLSGQAADTFEMLVDLELFDPLFPASAEALEEH 281
>gi|319778440|ref|YP_004129353.1| poly(A) polymerase [Taylorella equigenitalis MCE9]
gi|317108464|gb|ADU91210.1| Poly(A) polymerase [Taylorella equigenitalis MCE9]
gi|399115842|emb|CCG18645.1| poly(A) polymerase [Taylorella equigenitalis 14/56]
Length = 451
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 123/235 (52%), Gaps = 15/235 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR-FS 59
ML + PKDFD+ T+A E+ +F + I+G+RF + HV F I+E S+F TSG +
Sbjct: 63 MLGKAPKDFDVATNATPLEIKPLFRRALIIGRRFKLVHVVFGPEIIETSTFRTSGSQPED 122
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
D + F+ G E D R RDFTIN L +DP ++ +YD+ GI+DI+ +++
Sbjct: 123 NDGRILFDNNYGTIETDVDR------RDFTINALYYDPISETVYDFHNGIKDIKNLQIRM 176
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ ++ED R+LRAIR A +LG +F+ T +K LS I + R+ E +L
Sbjct: 177 IGDPEKRYREDPVRMLRAIRFAGKLGAKFAPSTYEPIKRLSHLISNVPDSRIFDETYKLL 236
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYL--------VKHGFRRRDKRSNLLLSL 226
G + ++ L + L + LP+ L ++ F R D+R L S+
Sbjct: 237 TCGDSIYCIQQLRQLQLDKGTLPLLEKILTLESSEKFLRIAFERTDQRVRLNKSI 291
>gi|417778102|ref|ZP_12425912.1| poly(A) polymerase [Leptospira weilii str. 2006001853]
gi|410781763|gb|EKR66332.1| poly(A) polymerase [Leptospira weilii str. 2006001853]
Length = 490
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + T+ ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTSKAIRKHKAELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF--SNLDK 232
N + + + + GLLEVL K F + KR++ F +N+ K
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGLLEVLF--------KEAFEKERKRNSNFGEKFLETNIGK 293
Query: 233 LLA 235
LA
Sbjct: 294 RLA 296
>gi|423198081|ref|ZP_17184664.1| poly(A) polymerase [Aeromonas hydrophila SSU]
gi|404630543|gb|EKB27218.1| poly(A) polymerase [Aeromonas hydrophila SSU]
Length = 499
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 115/215 (53%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T A +++ +FS C ++G+RF + H+ F ++EV++F + +
Sbjct: 91 LLGKTPKDFDIATDATPEQIKSLFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNT 150
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N L + ++D+ GG+ED+ + K+
Sbjct: 151 SKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGLEDLAERKL 210
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S TA +K L+P + + RL E
Sbjct: 211 ELIGDPETRYREDPVRMLRAVRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLK 270
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ G A A+ +LL ++GL + L P AA HG
Sbjct: 271 LFLAGDALATYKLLREYGLFQQLFPQVAALFTPHG 305
>gi|397662222|ref|YP_006502922.1| poly(A) polymerase [Taylorella equigenitalis ATCC 35865]
gi|394350401|gb|AFN36315.1| poly(A) polymerase [Taylorella equigenitalis ATCC 35865]
Length = 451
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 123/235 (52%), Gaps = 15/235 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR-FS 59
ML + PKDFD+ T+A E+ +F + I+G+RF + HV F I+E S+F TSG +
Sbjct: 63 MLGKAPKDFDVATNATPLEIKPLFRRALIIGRRFKLVHVVFGPEIIETSTFRTSGSQPED 122
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
D + F+ G E D R RDFTIN L +DP ++ +YD+ GI+DI+ +++
Sbjct: 123 NDGRILFDNNYGTIETDVDR------RDFTINALYYDPISETVYDFHNGIKDIKNLQIRM 176
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ ++ED R+LRAIR A +LG +F+ T +K LS I + R+ E +L
Sbjct: 177 IGDPEKRYREDPVRMLRAIRFAGKLGAKFAPSTYEPIKRLSHLISNVPDSRIFDETYKLL 236
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYL--------VKHGFRRRDKRSNLLLSL 226
G + ++ L + L + LP+ L ++ F R D+R L S+
Sbjct: 237 TCGDSIYCIQQLRQLQLDKGTLPLLEKILTLESSEKFLRIAFERTDQRVRLNKSI 291
>gi|387895642|ref|YP_006325939.1| poly(A) polymerase [Pseudomonas fluorescens A506]
gi|423693591|ref|ZP_17668111.1| poly(A) polymerase [Pseudomonas fluorescens SS101]
gi|387163486|gb|AFJ58685.1| poly(A) polymerase [Pseudomonas fluorescens A506]
gi|387999433|gb|EIK60762.1| poly(A) polymerase [Pseudomonas fluorescens SS101]
Length = 467
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDTNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNNLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|359299982|ref|ZP_09185821.1| polyA polymerase [Haemophilus [parainfluenzae] CCUG 13788]
gi|402305766|ref|ZP_10824825.1| polynucleotide adenylyltransferase [Haemophilus sputorum HK 2154]
gi|400376879|gb|EJP29766.1| polynucleotide adenylyltransferase [Haemophilus sputorum HK 2154]
Length = 449
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 129/260 (49%), Gaps = 16/260 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L R PKDFDI T+A +EV ++F QC +VGKRF + HV F I EV++F + S
Sbjct: 49 LLGRKPKDFDISTNARPEEVQKIFGRQCRLVGKRFRLAHVVFGREIFEVATFRANHENHS 108
Query: 60 RDFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
D + DE +R + +RDF++N +DP II+D+ G+ED+
Sbjct: 109 NDKISKV-----SDEGMLLRDNVYGSLREDAERRDFSVNAFYYDPTHNIIFDFFNGVEDL 163
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
+ K++ + +QED R+LRAIR A+L + TA +K ++ + + RL
Sbjct: 164 QAGKLRLLGNPIQRYQEDPVRMLRAIRFMAKLDMFLDKPTAKPIKEMAGLLTNIPAARLF 223
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E +L G + +LL ++GL E+L P+ + + + +L+ ++ D
Sbjct: 224 DESLKLLQSGEGVKTYQLLREYGLFELLFPVLPPFFTPN---QDSNAERMLIKALTSTDD 280
Query: 233 LLAPDRPCHSSLWIAILAFH 252
+ P + + A L ++
Sbjct: 281 RIKDGLPVNPAFLFAALFWY 300
>gi|359726099|ref|ZP_09264795.1| tRNA nucleotidyltransferase [Leptospira weilii str. 2006001855]
Length = 489
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + T+ ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTSKAIRKHKAELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF--SNLDK 232
N + + + + GLLEVL K F + KR++ F +N+ K
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGLLEVLF--------KEAFEKERKRNSNFGEKFLETNIGK 293
Query: 233 LLA 235
LA
Sbjct: 294 RLA 296
>gi|254428702|ref|ZP_05042409.1| poly(A) polymerase subfamily [Alcanivorax sp. DG881]
gi|196194871|gb|EDX89830.1| poly(A) polymerase subfamily [Alcanivorax sp. DG881]
Length = 432
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/255 (31%), Positives = 128/255 (50%), Gaps = 11/255 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+ R PKDFD+ T+A ++V R+F + I+G+RF I HV F ++EVS+F ++
Sbjct: 43 LCGREPKDFDVSTNATPEQVNRLFKRSRIIGRRFQIVHVRFGREVIEVSTFRAKASDDNQ 102
Query: 61 D-FKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D K+ G +D W + L+RDFTIN L ++ ++D++G + DI +
Sbjct: 103 DQNKHHAHEETGLVLRDNT-WGSIEEDALRRDFTINALYYNIADFTLHDFVGSMGDIDQE 161
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + F+ED R+LRA R AA+LGF TA + ++ +L++ RL E+
Sbjct: 162 VIRLIGNPEQRFREDPVRMLRAARFAAKLGFHIEESTARRIPDMAELLLQVPAARLFDEV 221
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLP-IQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLL 234
+ G A AS L + GL L P Q A G + +LL+ N D+ L
Sbjct: 222 LKLFLSGHARASYEQLQELGLFRFLFPETQQALESDQG----EIWEAMLLAAMDNTDRRL 277
Query: 235 APDRPCHSSLWIAIL 249
D+P + A+L
Sbjct: 278 LMDKPVTPAFIYAVL 292
>gi|312963066|ref|ZP_07777551.1| poly(A) polymerase [Pseudomonas fluorescens WH6]
gi|311282577|gb|EFQ61173.1| poly(A) polymerase [Pseudomonas fluorescens WH6]
Length = 467
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDTNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNNLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|398333562|ref|ZP_10518267.1| tRNA nucleotidyltransferase [Leptospira alexanderi serovar Manhao 3
str. L 60]
Length = 496
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + T+ ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTSKAIRKHKAELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF--SNLDK 232
N + + + + GLLEVL K F + KR++ F +N+ K
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGLLEVLF--------KEAFEKERKRNSNFGEKFLETNIGK 293
Query: 233 LLA 235
LA
Sbjct: 294 RLA 296
>gi|339478031|ref|YP_004706851.1| putative poly(A) polymerase I [Candidatus Moranella endobia PCIT]
gi|338172582|gb|AEI74983.1| putative poly(A) polymerase I [Candidatus Moranella endobia PCIT]
Length = 470
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 138/264 (52%), Gaps = 16/264 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI TSA +++ ++F C +VG+RF + HV F I+EV++F R +
Sbjct: 79 LLGQKPKDFDITTSATPEQMRKLFRNCRLVGRRFRLAHVMFGQEIIEVATF----RGQHQ 134
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
K E+ + + R+ + +RDF++N L + + DY GG++D
Sbjct: 135 VLKNEYSPGAALTSNNGMLLRDNIFGSIEEDAQRRDFSVNSLYYSVADFTLRDYTGGLKD 194
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + ++ED R+LRA+R AA+L SRETA + L+ + + RL
Sbjct: 195 LQEGTIRLLGDPEIRYREDPVRMLRAMRFAAKLNMNISRETAAPITRLAVLLHDIPPARL 254
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G EA+ RLL K+ L + L P+ + ++ HG ++ +++ + +N D
Sbjct: 255 FEESLKLLQAGYGEATYRLLCKYQLFQPLFPVISHHVTSHGDSYLEQ---MIIKVLANTD 311
Query: 232 KLLAPDRPCHSSLWIAILAFHKAL 255
+ L + +S+ A + ++ L
Sbjct: 312 QRLRNNMRVNSAFLFAAMLWYPLL 335
>gi|254447201|ref|ZP_05060668.1| poly(A) polymerase [gamma proteobacterium HTCC5015]
gi|198263340|gb|EDY87618.1| poly(A) polymerase [gamma proteobacterium HTCC5015]
Length = 434
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 124/261 (47%), Gaps = 31/261 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------------- 51
PKDFD+ TSA EV +F C +VG+RF + H+ +EV++F
Sbjct: 58 PKDFDVATSATPDEVKALFRNCRLVGRRFRLAHILLGRDFIEVATFRAGQESAGKKQAVA 117
Query: 52 -STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
S SGR S + G E+D R RDF++N L FD + I DY+G +
Sbjct: 118 HSDSGRILSDNV-------YGSLEQDAFR------RDFSVNALYFDVRDESIVDYVGAMA 164
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
DI +++ + T ++ED R+LRA+R AA+LGF T ++ LS + + R
Sbjct: 165 DIEARQLRLIGDPDTRYREDPVRMLRAVRFAAKLGFSIEPHTEAPIRELSDHLEDIPPAR 224
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L E+ +L G ASL LW+ LL LLP+ L+ R D +L +N
Sbjct: 225 LFDEVIKLLQSGHGVASLDGLWQHDLLRYLLPMTYGSLLTE---RGDHWRRMLEQALNNT 281
Query: 231 DKLLAPDRPCHSSLWIAILAF 251
D LA + + + A+L +
Sbjct: 282 DARLAQGKSTNPAFLYAVLLW 302
>gi|447918343|ref|YP_007398911.1| poly(A) polymerase [Pseudomonas poae RE*1-1-14]
gi|445202206|gb|AGE27415.1| poly(A) polymerase [Pseudomonas poae RE*1-1-14]
Length = 467
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDTNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVPDIRNNLIRLIGEPTQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|440739538|ref|ZP_20919049.1| poly(A) polymerase [Pseudomonas fluorescens BRIP34879]
gi|440379370|gb|ELQ15966.1| poly(A) polymerase [Pseudomonas fluorescens BRIP34879]
Length = 468
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDTNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVPDIRNNLIRLIGEPTQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|408479023|ref|ZP_11185242.1| poly(A) polymerase [Pseudomonas sp. R81]
Length = 467
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDTNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F R TA ++ L+P +
Sbjct: 175 DYANGVHDIRNNLIRLIGDPVQRYQEDPVRMLRAVRFAAKLNFGIERHTAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|388467827|ref|ZP_10142037.1| poly(A) polymerase [Pseudomonas synxantha BG33R]
gi|388011407|gb|EIK72594.1| poly(A) polymerase [Pseudomonas synxantha BG33R]
Length = 467
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDD 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDTNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNNLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKHTATPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|407792507|ref|ZP_11139544.1| poly(A) polymerase [Idiomarina xiamenensis 10-D-4]
gi|407217620|gb|EKE87452.1| poly(A) polymerase [Idiomarina xiamenensis 10-D-4]
Length = 462
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 115/213 (53%), Gaps = 6/213 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST--SGRRF 58
+L PKDFD++T+A +++ R+F C +VG+RF + H+ F I+EV++F +G +
Sbjct: 63 LLGITPKDFDVVTNAHPEQIKRLFRNCRLVGRRFRLAHIVFGRDIIEVATFRGHHNGEQA 122
Query: 59 SRDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D K + G +D + + +RDFT+N L ++ IYDY G+ DI
Sbjct: 123 QTD-KIAKQNDEGLLLRDNVYGDIDEDAERRDFTVNALYYNIADFAIYDYANGVRDIENG 181
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
+Q + A T ++ED R+LRAIR A +L R + A +K LSP + + RL E+
Sbjct: 182 VLQLIGDAETRYREDPVRMLRAIRFATKLNMRLADNVAAPIKQLSPLLQNIPAARLFEEV 241
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
+ G A+A+ +L + L + L P+ ++L
Sbjct: 242 LKLFVAGKAQANFLMLRDYQLFQQLFPLLKSHL 274
>gi|398344819|ref|ZP_10529522.1| tRNA nucleotidyltransferase [Leptospira inadai serovar Lyme str.
10]
Length = 488
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 2/202 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S RF
Sbjct: 68 LLERKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPEHRFG 127
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + E + I D K + +RDFTIN L +D I DY+GG +DIR +++
Sbjct: 128 KHIE-EQDYLIKRDNKFGTPQEDAARRDFTINALYYDIRNDSIVDYVGGFDDIRNRQLRV 186
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ SF+ED R+LRA++ A LG + R T+ +K + + K R+L E N +
Sbjct: 187 IGNPEISFREDPVRMLRAVKFAVLLGLKIDRGTSKSIKKNTSELEKASTSRMLEEYNKIF 246
Query: 180 AYGSAEASLRLLWKFGLLEVLL 201
+ + + LL+VL
Sbjct: 247 RTWKTSLIFQGMAQNHLLDVLF 268
>gi|346643233|ref|YP_262347.2| poly(A) polymerase [Pseudomonas protegens Pf-5]
gi|341580385|gb|AAY94489.2| poly(A) polymerase [Pseudomonas protegens Pf-5]
Length = 463
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVKAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 DEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNNLIRLIGDPRQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|148262375|ref|YP_001229081.1| poly(A) polymerase [Geobacter uraniireducens Rf4]
gi|146395875|gb|ABQ24508.1| poly(A) polymerase [Geobacter uraniireducens Rf4]
Length = 454
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 115/229 (50%), Gaps = 33/229 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L R PKDFDI+T A ++ R+F C ++G+RF + H+HF + I+EV++F ++ +
Sbjct: 50 LLGREPKDFDIVTDATPGQIKRMFRNCRLIGRRFRLAHLHFHDEIIEVATFRSASQDEPC 109
Query: 57 ------------------RFSRDFKYE-----FERPIGCDEKDFIRWRNCLQRDFTINGL 93
R R K E + G E+D IR RDFT+N L
Sbjct: 110 AEEQGPAPGEITEPGARMRPPRLLKSEDGMVLRDNIFGTPEEDAIR------RDFTVNAL 163
Query: 94 MFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETA 153
++ I DY+GG+ED+ + V+T+ F ED R++RA+R AA LGF + T
Sbjct: 164 CYNIDDFSIIDYVGGMEDLNRGVVRTIGDPLVRFTEDPVRMIRAVRFAAMLGFEVEKATW 223
Query: 154 HFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
+ LS +I K RL E+ + G+ E + +LL + GL L P
Sbjct: 224 QTILDLSATITKAAPPRLYEEVLKLFLMGAGEKTYQLLRQSGLFAALFP 272
>gi|399006578|ref|ZP_10709101.1| poly(A) polymerase [Pseudomonas sp. GM17]
gi|398121894|gb|EJM11505.1| poly(A) polymerase [Pseudomonas sp. GM17]
Length = 467
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSARNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR V+ + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNHLVRLIGDPRQRYQEDPVRMLRAVRFAAKLDFGIEKHTATPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|145297842|ref|YP_001140683.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida A449]
gi|142850614|gb|ABO88935.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida A449]
Length = 468
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI T+A +++ +FS C ++G+RF + H+ F ++EV++F + +
Sbjct: 57 LLGRTPKDFDIATNATPEQIKALFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNT 116
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N L + ++D+ GGIED+ + K+
Sbjct: 117 SKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSARDFTLHDFEGGIEDLAQRKL 176
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S +A +K L+P + + RL E
Sbjct: 177 ELIGDPETRYREDPVRMLRAMRFAAKLDMTISPRSAAPIKELAPLLQDIPPARLFEETLK 236
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ G A+ +L+ ++GL + L P AA HG
Sbjct: 237 LFLAGDGLATYKLMREYGLFQPLFPQVAALFTPHG 271
>gi|395498861|ref|ZP_10430440.1| poly(A) polymerase [Pseudomonas sp. PAMC 25886]
Length = 468
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDTNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNNLLRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|220915422|ref|YP_002490726.1| poly(A) polymerase [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953276|gb|ACL63660.1| poly(A) polymerase [Anaeromyxobacter dehalogenans 2CP-1]
Length = 556
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 23/270 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFE-NTIVEVSSFSTSGRRFS 59
+L PKDFD+ T A EV +F C ++G+RF + HV+F ++EV++F + +
Sbjct: 82 LLGATPKDFDVATDAHPGEVRAIFRNCRLIGRRFRLAHVYFRAGKVIEVATFRKNPTDVA 141
Query: 60 RDFKYEFERPIGCDEKDFIRWRN---------CLQRDFTINGLMFDPYAKIIYDYIGGIE 110
D +G E D + R+ ++RDFT+NGL +D + DY+GG
Sbjct: 142 ED--------VGEGEGDLLITRDNVFGTAEEDSVRRDFTVNGLFYDVATGEVIDYVGGRA 193
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+ ++ T+ +ED R LRA+R AARLGF + +T ++ S + + R
Sbjct: 194 DLEAHRISTIGDPEIRMREDPVRALRAVRFAARLGFTIAPDTFEAMRRTSGELARCAPAR 253
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
+L E +L G + + LL G L V+LP A L D R + + L
Sbjct: 254 VLEETFKLLRCGGSARAFELLRACGALPVILPALGAALETW----DDGRRRAFFAHLAAL 309
Query: 231 DKLLAPDRPCHSSLWIAILAFHKALSDQPR 260
D+L+ ++ + L H +D PR
Sbjct: 310 DRLVRSGAEVSEAVLLGALLMHLG-ADAPR 338
>gi|398346836|ref|ZP_10531539.1| tRNA nucleotidyltransferase [Leptospira broomii str. 5399]
Length = 489
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 110/202 (54%), Gaps = 2/202 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S RF
Sbjct: 68 LLERKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPEHRFG 127
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + E + I D K + +RDFTIN L +D I DY+GG +DIR +++
Sbjct: 128 KHVE-EQDYLIKRDNKFGTPQEDAARRDFTINALYYDIRNDSIVDYVGGFDDIRNRQLRV 186
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ SF+ED R+LRA++ A LG + R T+ +K + + K R+L E N +
Sbjct: 187 IGNPEISFREDPVRMLRAVKFAVLLGLKIDRGTSKSIKKNTSELEKASTSRMLEEYNKIF 246
Query: 180 AYGSAEASLRLLWKFGLLEVLL 201
+ + + LL+VL
Sbjct: 247 RTWKTSLIFQGMAQNHLLDVLF 268
>gi|425901606|ref|ZP_18878197.1| poly(A) polymerase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397884459|gb|EJL00944.1| poly(A) polymerase [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 467
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR V+ + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNHLVRLIGDPRQRYQEDPVRMLRAVRFAAKLDFGIEKHTATPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|339484891|ref|YP_004696677.1| poly(A) polymerase [Nitrosomonas sp. Is79A3]
gi|338807036|gb|AEJ03278.1| poly(A) polymerase [Nitrosomonas sp. Is79A3]
Length = 464
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 128/266 (48%), Gaps = 22/266 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A ++V ++F + I+G+RF + HV VEVS+F
Sbjct: 69 LLGLTPKDFDVATNATPEQVYQLFRRSRIIGRRFRLVHVMCGAETVEVSTFRGQSPDDGN 128
Query: 61 DF----------KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
D + + G E+D +R RDFT+N L +DP + I DY+ G E
Sbjct: 129 DHASVQLTDQHGRLLHDNVFGSQEEDAVR------RDFTVNALFYDPAKEEILDYLNGYE 182
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
DI+ K++ + F+ED R+LRA+R+A++L + ETA + L+P + + R
Sbjct: 183 DIKAKKMRIIGDPIIRFREDPVRMLRAVRLASKLDMQIETETAKPIGDLAPLLQNVPPSR 242
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L EM +L G A A + L GL LLP+ L + R + N
Sbjct: 243 LFDEMLKLLLSGHALACVVELRARGLHHGLLPMLDVILEQPLGER------FITIALKNT 296
Query: 231 DKLLAPDRPCHSSLWIAILAFHKALS 256
D+ + D+P AIL +H+ LS
Sbjct: 297 DERIRQDKPVSPGFLFAILLWHEVLS 322
>gi|407715693|ref|YP_006836973.1| polynucleotide adenylyltransferase, PcnB [Cycloclasticus sp. P1]
gi|407256029|gb|AFT66470.1| Polynucleotide adenylyltransferase, PcnB [Cycloclasticus sp. P1]
Length = 434
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 107/204 (52%), Gaps = 13/204 (6%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------STSGRRF 58
PKDFD+ T+AE +EV +F C ++G+RF + H+HF I+EV++F +
Sbjct: 56 PKDFDVSTNAEPEEVQALFKNCRLIGRRFRLAHIHFGRHIIEVATFRGPHVKHDKNDSHA 115
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
RD + + G E+D WR RDFT+N L DP K + DY+GGI+D + ++
Sbjct: 116 HRDGRLLRDNVYGTLEED--AWR----RDFTVNALYLDPKKKTVIDYVGGIKDHQNRVLR 169
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ T F+ED R+LRA+R A+L F+ +TA + ++P + + RL E +
Sbjct: 170 LMGDPVTRFKEDPVRLLRAVRFQAKLNFQIENDTAAPMLEMAPLLKDIPSARLYDETLKL 229
Query: 179 LAYGSAEASLRLLWKFGLLEVLLP 202
A L ++GL E L P
Sbjct: 230 FLNTDANQIFDALRQYGLFEALFP 253
>gi|395797993|ref|ZP_10477280.1| poly(A) polymerase [Pseudomonas sp. Ag1]
gi|421140181|ref|ZP_15600201.1| poly(A) polymerase [Pseudomonas fluorescens BBc6R8]
gi|395337985|gb|EJF69839.1| poly(A) polymerase [Pseudomonas sp. Ag1]
gi|404508573|gb|EKA22523.1| poly(A) polymerase [Pseudomonas fluorescens BBc6R8]
Length = 468
Score = 120 bits (302), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDTNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNNLLRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|389681786|ref|ZP_10173130.1| poly(A) polymerase [Pseudomonas chlororaphis O6]
gi|388554321|gb|EIM17570.1| poly(A) polymerase [Pseudomonas chlororaphis O6]
Length = 467
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR V+ + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNHLVRLIGDPRQRYQEDPVRMLRAVRFAAKLDFGIEKHTATPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|418687889|ref|ZP_13249046.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|410737313|gb|EKQ82054.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
Length = 487
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + TA ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAKILGLNIEKTTAKAIRKHKTELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGF-RRRDKRSNLLLS-LFSNLDK 232
N + + + + G+LEVL K F + R K SN L +N+ K
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGILEVLF--------KEAFDKERKKNSNFGEKFLETNIGK 293
Query: 233 LLA 235
LA
Sbjct: 294 RLA 296
>gi|418358238|ref|ZP_12960917.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida
01-B526]
gi|356688536|gb|EHI53095.1| poly(A) polymerase [Aeromonas salmonicida subsp. salmonicida
01-B526]
Length = 494
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI T+A +++ +FS C ++G+RF + H+ F ++EV++F + +
Sbjct: 83 LLGRTPKDFDIATNATPEQIKALFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNT 142
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N L + ++D+ GGIED+ + K+
Sbjct: 143 SKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSARDFTLHDFEGGIEDLAQRKL 202
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S +A +K L+P + + RL E
Sbjct: 203 ELIGDPETRYREDPVRMLRAMRFAAKLDMTISPRSAAPIKELAPLLQDIPPARLFEETLK 262
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ G A+ +L+ ++GL + L P AA HG
Sbjct: 263 LFLAGDGLATYKLMREYGLFQPLFPQVAALFTPHG 297
>gi|197120710|ref|YP_002132661.1| poly(A) polymerase [Anaeromyxobacter sp. K]
gi|196170559|gb|ACG71532.1| poly(A) polymerase [Anaeromyxobacter sp. K]
Length = 556
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 23/270 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFE-NTIVEVSSFSTSGRRFS 59
+L PKDFD+ T A EV +F C ++G+RF + HV+F ++EV++F + +
Sbjct: 82 LLGATPKDFDVATDAHPGEVRAIFRNCRLIGRRFRLAHVYFRAGKVIEVATFRKNPTDVA 141
Query: 60 RDFKYEFERPIGCDEKDFIRWRN---------CLQRDFTINGLMFDPYAKIIYDYIGGIE 110
D +G E D + R+ ++RDFT+NGL +D + DY+GG
Sbjct: 142 ED--------VGEGEGDLLITRDNVFGTAEEDSVRRDFTVNGLFYDVATGEVIDYVGGRA 193
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+ ++ T+ +ED R LRA+R AARLGF + +T ++ S + + R
Sbjct: 194 DLEAHRISTIGDPEIRMREDPVRALRAVRFAARLGFTIAPDTFEAMRRTSGELARCAPAR 253
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
+L E +L G + + LL G L V+LP A L D R + + L
Sbjct: 254 VLEETFKLLRCGGSARAFELLRACGALPVILPALGAALETWD----DGRRRAFFAHLAAL 309
Query: 231 DKLLAPDRPCHSSLWIAILAFHKALSDQPR 260
D+L+ ++ + L H +D PR
Sbjct: 310 DRLVRSGAEVSEAVLLGALLMHLG-ADAPR 338
>gi|289628855|ref|ZP_06461809.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. NCPPB
3681]
gi|289651028|ref|ZP_06482371.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 2250]
gi|422582553|ref|ZP_16657688.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|422607019|ref|ZP_16679023.1| poly(A) polymerase [Pseudomonas syringae pv. mori str. 301020]
gi|330867395|gb|EGH02104.1| poly(A) polymerase [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330890665|gb|EGH23326.1| poly(A) polymerase [Pseudomonas syringae pv. mori str. 301020]
Length = 467
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRSLAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 345
>gi|398338484|ref|ZP_10523187.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
kirschneri serovar Bim str. 1051]
gi|418675936|ref|ZP_13237222.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|418694793|ref|ZP_13255825.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. H1]
gi|418739420|ref|ZP_13295804.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
gi|421090625|ref|ZP_15551417.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. 200802841]
gi|421108429|ref|ZP_15568967.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. H2]
gi|421130165|ref|ZP_15590362.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. 2008720114]
gi|400323701|gb|EJO71549.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|409957419|gb|EKO16328.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. H1]
gi|410000839|gb|EKO51467.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. 200802841]
gi|410006422|gb|EKO60180.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. H2]
gi|410358624|gb|EKP05780.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
str. 2008720114]
gi|410753220|gb|EKR10189.1| putative polynucleotide adenylyltransferase [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
Length = 487
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + TA ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTAKAIRKHKTELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGF-RRRDKRSNLLLS-LFSNLDK 232
N + + + + G+LEVL K F + R K SN L +N+ K
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGILEVLF--------KEAFDKERKKNSNFGEKFLETNIGK 293
Query: 233 LLA 235
LA
Sbjct: 294 RLA 296
>gi|71733402|ref|YP_273137.1| poly(A) polymerase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71553955|gb|AAZ33166.1| poly(A) polymerase [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 491
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 92 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 151
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 152 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 199
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 200 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRSLAPML 259
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 260 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 319
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 320 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 369
>gi|418465710|ref|ZP_13036643.1| poly(A) polymerase [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755745|gb|EHK89908.1| poly(A) polymerase [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 488
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 130/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ +F QC +VG+RF + HV F I+EV++F +G
Sbjct: 94 LLGKKPKDFDVATNARPEQIQAIFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHAEH 152
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GIED++ K
Sbjct: 153 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDYFNGIEDLKNGK 212
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 213 LRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLDKPSETPIKELSHLLKNIPPARLFEESL 272
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L GS + RLL ++GL E L P+ + Y + R ++L ++ D+ +A
Sbjct: 273 KLLQGGSGVKTYRLLRQYGLFEQLFPLLSNYFTE---REDSMAEKMILRALTSTDERVAD 329
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 330 KLPVNPAFLFA 340
>gi|237749035|ref|ZP_04579515.1| poly(A) polymerase [Oxalobacter formigenes OXCC13]
gi|229380397|gb|EEO30488.1| poly(A) polymerase [Oxalobacter formigenes OXCC13]
Length = 463
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/328 (29%), Positives = 157/328 (47%), Gaps = 56/328 (17%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T+A ++V R+F + ++G+RF I HV F ++EV++F
Sbjct: 66 LLGLKPKDFDVATNATPEQVKRLFKRAFLIGRRFQIVHVMFGQDLIEVTTFRGASDKPAI 125
Query: 52 -STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
SGR RD + G +D R RDFTIN + ++P +++ DY GGI+
Sbjct: 126 KDESGR-LLRDNNF------GTQSEDAAR------RDFTINAMYYNPANQVLLDYHGGIK 172
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+R ++ + ++ED R+LR +R AA+LGF + T + L+P + + R
Sbjct: 173 DLRSKTLRVIGNPEQRYREDPVRMLRIVRFAAKLGFSIDKTTGAPIAALAPLMNNVPSAR 232
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPI--------QAAYLVKHGFRRRDKRSNL 222
L EM +L G + + L+ L GL + LLP+ +AA+ ++ + D+R
Sbjct: 233 LFDEMLKLLMSGHSMSCLKELRARGLHQGLLPLLDVALEQPEAAHFIELSLEKTDQR--- 289
Query: 223 LLSLFSNLDKLLAPDRPCHSSLWIAI---LAFHKALSDQPRDPLVVAVFSLAVYNGGDML 279
+K ++P + LW + A ++A + P LV A D+L
Sbjct: 290 -----IRQNKRISPGFLFATLLWTQVEEKWAEYRAKGEHPIPALVAA--------SSDVL 336
Query: 280 ----EAVKIARRINKSHDESFCELLEPR 303
E + I RRI + D LL+PR
Sbjct: 337 DVQTEKLAIQRRI--ATDMRDIWLLQPR 362
>gi|117620345|ref|YP_858006.1| poly(A) polymerase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117561752|gb|ABK38700.1| poly(A) polymerase [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 499
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 114/215 (53%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T A +++ +FS C ++G+RF + H+ F ++EV++F + +
Sbjct: 91 LLGKTPKDFDIATDATPEQIKSLFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNT 150
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N L + ++D+ GG+ED+ + K+
Sbjct: 151 SKHVSAQSDEGMLLRDNVYGTIVEDAERRDFTVNALYYSAKDFTLHDFEGGLEDLAERKL 210
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S TA +K L+P + + RL E
Sbjct: 211 ELIGDPETRYREDPVRMLRAVRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLK 270
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ G A+ +LL ++GL + L P AA HG
Sbjct: 271 LFLAGDGLATYKLLREYGLFQQLFPQVAALFTPHG 305
>gi|257484045|ref|ZP_05638086.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|422597453|ref|ZP_16671726.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|422683729|ref|ZP_16741987.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
gi|330987743|gb|EGH85846.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331013061|gb|EGH93117.1| poly(A) polymerase [Pseudomonas syringae pv. tabaci str. ATCC
11528]
Length = 467
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRSLAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 345
>gi|422620034|ref|ZP_16688718.1| poly(A) polymerase, partial [Pseudomonas syringae pv. japonica str.
M301072]
gi|330900398|gb|EGH31817.1| poly(A) polymerase, partial [Pseudomonas syringae pv. japonica str.
M301072]
Length = 363
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRALAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 345
>gi|323142936|ref|ZP_08077646.1| putative polynucleotide adenylyltransferase [Succinatimonas hippei
YIT 12066]
gi|322417289|gb|EFY07913.1| putative polynucleotide adenylyltransferase [Succinatimonas hippei
YIT 12066]
Length = 423
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 109/211 (51%), Gaps = 16/211 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L ++PKDFDI T+A ++V R+F I+G+RF I HV F I+EV++F S
Sbjct: 2 LLGKVPKDFDISTNATPEQVHRLFRNSRIIGRRFKIVHVVFGQEIIEVTTFRSAVNGNLG 61
Query: 60 RDFKYEFERPIGCDEKDFIR--------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R+ I D+ IR + +RDFTIN + +D + D+ GG+ D
Sbjct: 62 RN-------QIQNDDGMLIRDNSYGKTLEEDATRRDFTINAIYYDISNFTLIDFHGGLYD 114
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ + + T +QED R++RA+R +A+LGF+ S+ TA +K S +L + R+
Sbjct: 115 LNNGIIDIIGDPHTRYQEDPVRMIRAVRFSAKLGFKISKRTADPIKTHSALLLNVSNARM 174
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
E+N + G S L FGL +L P
Sbjct: 175 FDEVNKLFLTGHGLQSFHKLRDFGLFNLLFP 205
>gi|417768733|ref|ZP_12416660.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Pomona str. Pomona]
gi|418679778|ref|ZP_13241035.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418717541|ref|ZP_13277203.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 08452]
gi|421125964|ref|ZP_15586208.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421136816|ref|ZP_15596913.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|400328379|gb|EJO80611.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|409949379|gb|EKN99356.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Pomona str. Pomona]
gi|410018998|gb|EKO85826.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410436616|gb|EKP85728.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410787138|gb|EKR80873.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 08452]
gi|455670166|gb|EMF35203.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Pomona str. Fox 32256]
Length = 487
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + TA ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTAKAIRKHKTELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGF-RRRDKRSNLLLS-LFSNLDK 232
N + + + + G+LEVL K F + R K SN L +N+ K
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGILEVLF--------KEAFDKERKKNSNFGEKFLETNIGK 293
Query: 233 LLA 235
LA
Sbjct: 294 RLA 296
>gi|330828362|ref|YP_004391314.1| poly(A) polymerase [Aeromonas veronii B565]
gi|423201104|ref|ZP_17187684.1| poly(A) polymerase [Aeromonas veronii AER39]
gi|423210950|ref|ZP_17197503.1| poly(A) polymerase [Aeromonas veronii AER397]
gi|328803498|gb|AEB48697.1| Poly(A) polymerase [Aeromonas veronii B565]
gi|404614345|gb|EKB11346.1| poly(A) polymerase [Aeromonas veronii AER397]
gi|404618087|gb|EKB15008.1| poly(A) polymerase [Aeromonas veronii AER39]
Length = 488
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 114/215 (53%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T A +++ +FS C ++G+RF + H+ F ++EV++F + +
Sbjct: 83 LLGKTPKDFDIATDATPEQIKALFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNT 142
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N L + ++D+ GG+ED+ + K+
Sbjct: 143 SKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGLEDLAERKL 202
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S TA +K L+P + + RL E
Sbjct: 203 ELIGDPETRYREDPVRMLRAVRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLK 262
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ G A+ +LL ++GL + L P AA HG
Sbjct: 263 LFLAGDGLATYKLLREYGLFQQLFPQVAALFTPHG 297
>gi|260914325|ref|ZP_05920794.1| polyA polymerase [Pasteurella dagmatis ATCC 43325]
gi|260631426|gb|EEX49608.1| polyA polymerase [Pasteurella dagmatis ATCC 43325]
Length = 499
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 117/216 (54%), Gaps = 5/216 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD++TSA +++ +F QC +VG+RF + H+ F I+EV++F + S
Sbjct: 108 LLGKHPKDFDVVTSARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHTE-S 166
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
R+ + G +D + ++ +RDFT+N L ++P + DY GIED++ K
Sbjct: 167 RNENHAKRSEEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFNGIEDLKAGK 226
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + +T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 227 LRLIGDPATRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESL 286
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + +LL ++GL + L P Y + G
Sbjct: 287 KLLQAGYGVKTYKLLREYGLFDQLFPSLIPYFTEKG 322
>gi|410448017|ref|ZP_11302105.1| poly(A) polymerase [Leptospira sp. Fiocruz LV3954]
gi|421111592|ref|ZP_15572066.1| poly(A) polymerase [Leptospira santarosai str. JET]
gi|410018222|gb|EKO80266.1| poly(A) polymerase [Leptospira sp. Fiocruz LV3954]
gi|410803001|gb|EKS09145.1| poly(A) polymerase [Leptospira santarosai str. JET]
Length = 491
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 12/207 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + T+ ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTSKAIRKHKMELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLL 201
N + A + + + GLLEVL
Sbjct: 242 YNKIFRTWKASLIFQGMAEHGLLEVLF 268
>gi|338733740|ref|YP_004672213.1| poly(A) polymerase [Simkania negevensis Z]
gi|336483123|emb|CCB89722.1| poly(A) polymerase [Simkania negevensis Z]
Length = 414
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 112/208 (53%), Gaps = 8/208 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI TSA +E+ +F ++GKRF + HV F ++EVS+F R
Sbjct: 48 LLKKRPKDFDISTSARPEEIKALFPSAILIGKRFRLAHVRFGRKVIEVSTF--------R 99
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
E E+ I D ++ L+RDFTINGL +D + + DY+GG DI+K ++ +
Sbjct: 100 AGDIENEQLITEDNIWGSPEQDVLRRDFTINGLFYDCATEEVIDYVGGYADIQKKYLRAI 159
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R++R ++ AR GF E + I+K + R+L E+ ML
Sbjct: 160 GQPYLRFKQDPVRMIRCLKFQARYGFEVDEEARQALIDCKKDIVKSSQARVLEELLRMLE 219
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYL 208
GSA + +L+ GLL+ L+P A +L
Sbjct: 220 SGSASSFFKLMTDHGLLQQLIPTLAEFL 247
>gi|24215701|ref|NP_713182.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. 56601]
gi|304570488|ref|YP_001035.2| poly A polymerase [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|386074886|ref|YP_005989204.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. IPAV]
gi|417760228|ref|ZP_12408254.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000624]
gi|417765374|ref|ZP_12413336.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417774488|ref|ZP_12422353.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000621]
gi|417785446|ref|ZP_12433150.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. C10069]
gi|418675491|ref|ZP_13236782.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000623]
gi|418693254|ref|ZP_13254317.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. FPW2026]
gi|418702287|ref|ZP_13263198.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Bataviae str. L1111]
gi|418705528|ref|ZP_13266392.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418709225|ref|ZP_13270019.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|418723815|ref|ZP_13282649.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 12621]
gi|418731397|ref|ZP_13289796.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 12758]
gi|421087104|ref|ZP_15547945.1| putative polynucleotide adenylyltransferase [Leptospira santarosai
str. HAI1594]
gi|421104986|ref|ZP_15565579.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|421116506|ref|ZP_15576891.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|421120216|ref|ZP_15580530.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. Brem 329]
gi|24196872|gb|AAN50200.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. 56601]
gi|353458676|gb|AER03221.1| tRNA nucleotidyltransferase/poly A polymerase [Leptospira
interrogans serovar Lai str. IPAV]
gi|400352311|gb|EJP04507.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|400356912|gb|EJP13070.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. FPW2026]
gi|409943795|gb|EKN89386.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000624]
gi|409951311|gb|EKO05826.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. C10069]
gi|409962613|gb|EKO26347.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 12621]
gi|410011966|gb|EKO70072.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410347302|gb|EKO98221.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. Brem 329]
gi|410365296|gb|EKP20691.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410430213|gb|EKP74583.1| putative polynucleotide adenylyltransferase [Leptospira santarosai
str. HAI1594]
gi|410575821|gb|EKQ38838.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000621]
gi|410577653|gb|EKQ45523.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. 2002000623]
gi|410758806|gb|EKR25032.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410764794|gb|EKR35497.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410770561|gb|EKR45780.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410773929|gb|EKR53950.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
str. UI 12758]
gi|456825339|gb|EMF73735.1| putative polynucleotide adenylyltransferase [Leptospira interrogans
serovar Canicola str. LT1962]
Length = 487
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + TA ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTAKAIRKHKTELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGF-RRRDKRSNLLLS-LFSNLDK 232
N + + + + G+LEVL K F + R K SN L +N+ K
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGILEVLF--------KEAFDKERKKNSNFGEKFLETNIGK 293
Query: 233 LLA 235
LA
Sbjct: 294 RLA 296
>gi|45600186|gb|AAS69672.1| polynucleotide adenyltransferase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 450
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 31 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 90
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 91 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 144
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + TA ++ + K R+L E
Sbjct: 145 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTAKAIRKHKTELEKASSSRMLEE 204
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGF-RRRDKRSNLLLS-LFSNLDK 232
N + + + + G+LEVL K F + R K SN L +N+ K
Sbjct: 205 YNKIFRTWKTSLIFQGMAEHGILEVLF--------KEAFDKERKKNSNFGEKFLETNIGK 256
Query: 233 LLA 235
LA
Sbjct: 257 RLA 259
>gi|423205341|ref|ZP_17191897.1| poly(A) polymerase [Aeromonas veronii AMC34]
gi|404624136|gb|EKB20976.1| poly(A) polymerase [Aeromonas veronii AMC34]
Length = 496
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 114/215 (53%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T A +++ +FS C ++G+RF + H+ F ++EV++F + +
Sbjct: 91 LLGKTPKDFDIATDATPEQIKALFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNT 150
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N L + ++D+ GG+ED+ + K+
Sbjct: 151 SKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGLEDLAERKL 210
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S TA +K L+P + + RL E
Sbjct: 211 ELIGDPETRYREDPVRMLRAVRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLK 270
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ G A+ +LL ++GL + L P AA HG
Sbjct: 271 LFLAGDGLATYKLLREYGLFQQLFPQVAALFTPHG 305
>gi|416014304|ref|ZP_11562163.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. B076]
gi|298159943|gb|EFI00982.1| Poly(A) polymerase [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320326088|gb|EFW82145.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. B076]
Length = 467
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRSLAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 345
>gi|410939984|ref|ZP_11371806.1| poly(A) polymerase [Leptospira noguchii str. 2006001870]
gi|410784922|gb|EKR73891.1| poly(A) polymerase [Leptospira noguchii str. 2006001870]
Length = 487
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINALYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + TA ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTAKAIRKHKAELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGF-RRRDKRSNLLLS-LFSNLDK 232
N + + + + G+LE+L K F + R K SN L +N+ K
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGILEILF--------KEAFDKERKKNSNFGEKFLETNIGK 293
Query: 233 LLA 235
LA
Sbjct: 294 RLA 296
>gi|289164882|ref|YP_003455020.1| poly(A) polymerase [Legionella longbeachae NSW150]
gi|288858055|emb|CBJ11915.1| Poly(A) polymerase (PAP) (Plasmid copy number protein) [Legionella
longbeachae NSW150]
Length = 438
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 136/281 (48%), Gaps = 36/281 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L++ PKDFD+ T+A +V +F I+G+RF + H+ F I+EV++F +
Sbjct: 59 LLHKAPKDFDVATNATPNQVKSLFRNGRIIGRRFKLVHILFHREIIEVATFRSHVALDEN 118
Query: 54 --SGRR--FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
+ R RD Y G ++D WR RDFTIN L ++ I D+ GG+
Sbjct: 119 QVTNERGMLVRDNAY------GSLDED--AWR----RDFTINSLYYNINDSSIIDFTGGV 166
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
+D+ K ++ + +QED R+LRAIR +A+L F+ + ETA +S I +
Sbjct: 167 KDVEKRLIRMIGDPIKRYQEDPVRMLRAIRFSAKLNFKLAAETAAPFPEISHLITHVSNS 226
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FS 228
RL EM + G+AE +LL ++GL L P Q L+ + N LL++
Sbjct: 227 RLFDEMTKLYQCGNAETVQKLLIQYGLFGHLFP-QTQKLLGGAY-----PINALLAIALE 280
Query: 229 NLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
N D + D+P + LW ++ K L DPL
Sbjct: 281 NTDTRIREDKPVTPAFLFAVFLWFPMVEHSKQLQSTGIDPL 321
>gi|406678433|ref|ZP_11085609.1| poly(A) polymerase [Aeromonas veronii AMC35]
gi|404622514|gb|EKB19377.1| poly(A) polymerase [Aeromonas veronii AMC35]
Length = 488
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 114/215 (53%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T A +++ +FS C ++G+RF + H+ F ++EV++F + +
Sbjct: 83 LLGKTPKDFDIATDATPEQIKALFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNT 142
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N L + ++D+ GG+ED+ + K+
Sbjct: 143 SKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGLEDLAERKL 202
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S TA +K L+P + + RL E
Sbjct: 203 ELIGDPETRYREDPVRMLRAVRFAAKLDMTISPRTAAPIKELAPLLQDIPAARLFEETLK 262
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ G A+ +LL ++GL + L P AA HG
Sbjct: 263 LFLAGDGLATYKLLREYGLFQQLFPQVAALFTPHG 297
>gi|359684020|ref|ZP_09254021.1| tRNA nucleotidyltransferase [Leptospira santarosai str. 2000030832]
gi|418744516|ref|ZP_13300872.1| poly(A) polymerase [Leptospira santarosai str. CBC379]
gi|418751681|ref|ZP_13307963.1| poly(A) polymerase [Leptospira santarosai str. MOR084]
gi|422002122|ref|ZP_16349360.1| tRNA nucleotidyltransferase [Leptospira santarosai serovar Shermani
str. LT 821]
gi|409967984|gb|EKO35799.1| poly(A) polymerase [Leptospira santarosai str. MOR084]
gi|410794967|gb|EKR92867.1| poly(A) polymerase [Leptospira santarosai str. CBC379]
gi|417259054|gb|EKT88433.1| tRNA nucleotidyltransferase [Leptospira santarosai serovar Shermani
str. LT 821]
gi|456876233|gb|EMF91356.1| poly(A) polymerase [Leptospira santarosai str. ST188]
Length = 491
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 12/207 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + T+ ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTSKAIRKHKMELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLL 201
N + A + + + GLLEVL
Sbjct: 242 YNKIFRTWKASLIFQGMAEHGLLEVLF 268
>gi|229592622|ref|YP_002874741.1| putative polynucleotide adenylyltransferase [Pseudomonas
fluorescens SBW25]
gi|229364488|emb|CAY52328.1| putative polynucleotide adenylyltransferase [Pseudomonas
fluorescens SBW25]
Length = 467
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRAGHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDTNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNNLIRLIGDPVQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|418666425|ref|ZP_13227848.1| poly(A) polymerase [Leptospira interrogans serovar Pyrogenes str.
2006006960]
gi|410757789|gb|EKR19396.1| poly(A) polymerase [Leptospira interrogans serovar Pyrogenes str.
2006006960]
Length = 487
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + TA ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTAKAIRKHKTELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGF-RRRDKRSNLLLS-LFSNLDK 232
N + + + + G+LEVL K F + R K SN L +N+ K
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGILEVLF--------KEAFDKERKKNSNFGEKFLETNIGK 293
Query: 233 LLA 235
LA
Sbjct: 294 RLA 296
>gi|330443816|ref|YP_004376802.1| poly A polymerase [Chlamydophila pecorum E58]
gi|328806926|gb|AEB41099.1| poly A polymerase [Chlamydophila pecorum E58]
Length = 414
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 108/202 (53%), Gaps = 8/202 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI TSA+ +E+ +F C +VGKRF + H+ F N I+EVS+F +
Sbjct: 56 LLGTTPKDFDISTSAKPEEIKALFKNCILVGKRFRLAHIRFANQIIEVSTFRSGDT--ET 113
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + G E+D +R RDFTINGL +DP + I DY GG+ D+ ++T+
Sbjct: 114 DALITKDNLWGTPEEDVLR------RDFTINGLFYDPAEEAIIDYTGGMSDLSNHYLRTI 167
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F++D R+LR ++I +R F + +T + + K + R+ E+ ML
Sbjct: 168 GDPFMRFKQDPVRMLRLLKILSRFQFTVAPQTQEALLACHRELTKSSQARVFEELIKMLN 227
Query: 181 YGSAEASLRLLWKFGLLEVLLP 202
G + RLL + LLE+L P
Sbjct: 228 SGVSARFFRLLKENHLLEILFP 249
>gi|302185887|ref|ZP_07262560.1| poly(A) polymerase [Pseudomonas syringae pv. syringae 642]
gi|422631705|ref|ZP_16696887.1| poly(A) polymerase [Pseudomonas syringae pv. pisi str. 1704B]
gi|422641975|ref|ZP_16705396.1| poly(A) polymerase [Pseudomonas syringae Cit 7]
gi|422666860|ref|ZP_16726726.1| poly(A) polymerase [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|424066042|ref|ZP_17803515.1| poly(A) polymerase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|424070690|ref|ZP_17808123.1| poly(A) polymerase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|440721247|ref|ZP_20901647.1| poly(A) polymerase [Pseudomonas syringae BRIP34876]
gi|440728585|ref|ZP_20908798.1| poly(A) polymerase [Pseudomonas syringae BRIP34881]
gi|440741740|ref|ZP_20921073.1| poly(A) polymerase [Pseudomonas syringae BRIP39023]
gi|443641536|ref|ZP_21125386.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B64]
gi|330941558|gb|EGH44344.1| poly(A) polymerase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330954360|gb|EGH54620.1| poly(A) polymerase [Pseudomonas syringae Cit 7]
gi|330977389|gb|EGH77338.1| poly(A) polymerase [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|408000107|gb|EKG40472.1| poly(A) polymerase [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|408002716|gb|EKG42954.1| poly(A) polymerase [Pseudomonas syringae pv. avellanae str.
ISPaVe013]
gi|440361374|gb|ELP98605.1| poly(A) polymerase [Pseudomonas syringae BRIP34881]
gi|440363869|gb|ELQ01023.1| poly(A) polymerase [Pseudomonas syringae BRIP34876]
gi|440378598|gb|ELQ15216.1| poly(A) polymerase [Pseudomonas syringae BRIP39023]
gi|443281553|gb|ELS40558.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B64]
Length = 467
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRALAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 345
>gi|66044085|ref|YP_233926.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a]
gi|63254792|gb|AAY35888.1| Poly(A) polymerase [Pseudomonas syringae pv. syringae B728a]
Length = 491
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 92 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 151
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 152 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 199
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 200 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRALAPML 259
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 260 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 319
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 320 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 369
>gi|402701811|ref|ZP_10849790.1| poly(A) polymerase [Pseudomonas fragi A22]
Length = 464
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNRLLRLIGDPQQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G+A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGNACDTFEMLVDLQLFDPLFPASAEAL 279
>gi|289674926|ref|ZP_06495816.1| poly(A) polymerase, partial [Pseudomonas syringae pv. syringae FF5]
Length = 408
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRALAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 345
>gi|423097357|ref|ZP_17085153.1| poly(A) polymerase [Pseudomonas fluorescens Q2-87]
gi|397887919|gb|EJL04402.1| poly(A) polymerase [Pseudomonas fluorescens Q2-87]
Length = 465
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 134/286 (46%), Gaps = 39/286 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA +++ F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQIRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNRLIRLIGDPKQRYQEDPVRMLRAVRFAAKLDFGIEKHSATPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E+ + G+A + +L L + L P A L + L+
Sbjct: 235 REIPSARLFEEVLKLFLSGNAADTFEMLVDLQLFDPLFPASAEALEHNP----TYTHTLI 290
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+N D + ++P + LW A+ A L D+ P+
Sbjct: 291 SEALANTDLRIKQNKPVTPAFLFAALLWPALPARVLRLQDRGMPPI 336
>gi|397688148|ref|YP_006525467.1| poly(A) polymerase [Pseudomonas stutzeri DSM 10701]
gi|395809704|gb|AFN79109.1| poly(A) polymerase [Pseudomonas stutzeri DSM 10701]
Length = 466
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 127/267 (47%), Gaps = 35/267 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+D+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 67 LLELTPKDYDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPEEDD 126
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP ++ I
Sbjct: 127 DDASHLASRNESGR-ILRDNVY------GTLEDDAQR------RDFTINALYYDPSSERI 173
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
+D+ G++DIR +++ + +QED R+LRA+R AA+L F R +A + L+
Sbjct: 174 HDHTHGMQDIRNRQIRLIGNPEQRYQEDPVRMLRAVRFAAKLDFDIERHSAEPIPELADL 233
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+ + RL E+ + G AE + LL ++ L L P A L + D L
Sbjct: 234 LDGIPSARLFDEILKLFLGGKAERTFELLLEYDLFAPLFPASAEALEEDP----DYAGTL 289
Query: 223 LLSLFSNLDKLLAPDRPCHSSLWIAIL 249
+ + +N D +A +P + A L
Sbjct: 290 IRNALANTDLRIAQGKPVTPAFLFAAL 316
>gi|419839723|ref|ZP_14363128.1| poly(A) polymerase [Haemophilus haemolyticus HK386]
gi|386909146|gb|EIJ73823.1| poly(A) polymerase [Haemophilus haemolyticus HK386]
Length = 480
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 89 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 148
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 149 NENQAKQSNEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFDGIQDLKAGKL 208
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 209 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 268
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P +AY +
Sbjct: 269 LLQAGQGVKTYRLLRQYGLFEQLFPALSAYFTE 301
>gi|270156669|ref|ZP_06185326.1| poly(A) polymerase [Legionella longbeachae D-4968]
gi|269988694|gb|EEZ94948.1| poly(A) polymerase [Legionella longbeachae D-4968]
Length = 402
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 135/281 (48%), Gaps = 36/281 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L++ PKDFD+ T+A +V +F I+G+RF + H+ F I+EV++F
Sbjct: 23 LLHKAPKDFDVATNATPNQVKSLFRNGRIIGRRFKLVHILFHREIIEVATFRSHVALDEN 82
Query: 52 STSGRR--FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
+ R RD Y G ++D WR RDFTIN L ++ I D+ GG+
Sbjct: 83 QVTNERGMLVRDNAY------GSLDED--AWR----RDFTINSLYYNINDSSIIDFTGGV 130
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
+D+ K ++ + +QED R+LRAIR +A+L F+ + ETA +S I +
Sbjct: 131 KDVEKRLIRMIGDPIKRYQEDPVRMLRAIRFSAKLNFKLAAETAAPFPEISHLITHVSNS 190
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FS 228
RL EM + G+AE +LL ++GL L P Q L+ + N LL++
Sbjct: 191 RLFDEMTKLYQCGNAETVQKLLIQYGLFGHLFP-QTQKLLGGAY-----PINALLAIALE 244
Query: 229 NLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
N D + D+P + LW ++ K L DPL
Sbjct: 245 NTDTRIREDKPVTPAFLFAVFLWFPMVEHSKQLQSTGIDPL 285
>gi|148827216|ref|YP_001291969.1| polyA polymerase [Haemophilus influenzae PittGG]
gi|148718458|gb|ABQ99585.1| polyA polymerase [Haemophilus influenzae PittGG]
Length = 452
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 180
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 181 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 240
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P +AY +
Sbjct: 241 LLQAGQGVKTYRLLRQYGLFEQLFPTLSAYFTE 273
>gi|113869035|ref|YP_727524.1| Poly(A) polymerase [Ralstonia eutropha H16]
gi|113527811|emb|CAJ94156.1| Poly(A) polymerase [Ralstonia eutropha H16]
Length = 513
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 131/278 (47%), Gaps = 29/278 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A +V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 70 LLGIKPKDFDVATNATPDQVQALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 129
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
GRR R D K G +D + W + +RDFTIN + +DP
Sbjct: 130 AIASETLPEGRRLKRAELDSKTHAIDASGRVLRDNV-WGSQAEDAERRDFTINAMYYDPA 188
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
A+ ++DY G+EDIR ++ + T ++ED R+LR +R AA+ F T H +
Sbjct: 189 AQTVHDYHHGMEDIRARTLRMIGDPVTRYREDPIRMLRVVRFAAKTSFDIDEATRHPIAG 248
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L+ I + RL EM +L G A ASL+ L K GL + LLP+ L + +R
Sbjct: 249 LASLIHNVPSARLFDEMLKLLMSGHAWASLQELRKAGLHQGLLPLLDVALEQPMGQR--- 305
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
+ N D+ + +P A L +H L
Sbjct: 306 ---FVQLALDNTDRRVQAGKPVSPGFLFAALLWHHVLQ 340
>gi|86156707|ref|YP_463492.1| hypothetical protein Adeh_0279 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773218|gb|ABC80055.1| hypothetical protein Adeh_0279 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 549
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 23/270 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFE-NTIVEVSSFSTSGRRFS 59
+L PKDFD+ T A EV +F C ++G+RF + HV+F ++EV++F + +
Sbjct: 82 LLGATPKDFDVATDAHPGEVRAIFRNCRLIGRRFRLAHVYFRAGKVIEVATFRKNPTDVA 141
Query: 60 RDFKYEFERPIGCDEKDFIRWRN---------CLQRDFTINGLMFDPYAKIIYDYIGGIE 110
D +G E D + R+ ++RDFT+NGL +D + DY+GG
Sbjct: 142 ED--------VGEGEGDLLITRDNVFGTAEEDSVRRDFTVNGLFYDVATGEVIDYVGGRA 193
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+ ++ T+ +ED R LRA+R AARLGF + +T ++ + + + R
Sbjct: 194 DLEAHRISTIGDPEIRMREDPVRALRAVRFAARLGFTIAPDTFEAMRRTAGELARCAPAR 253
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
+L E +L G + + LL G L V+LP A L D R + + L
Sbjct: 254 VLEETFKLLRCGGSARAFELLRACGALPVILPALGAALETW----DDGRRRAFFAHLAAL 309
Query: 231 DKLLAPDRPCHSSLWIAILAFHKALSDQPR 260
D+L+ ++ + L H +D PR
Sbjct: 310 DRLVRSGAEVSEAVLLGALLMHLG-ADAPR 338
>gi|407697659|ref|YP_006822447.1| poly(A) polymerase subfamily [Alcanivorax dieselolei B5]
gi|407254997|gb|AFT72104.1| Poly(A) polymerase subfamily [Alcanivorax dieselolei B5]
Length = 461
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 129/257 (50%), Gaps = 17/257 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+ R PKDFD++T A ++V R+F + I+G+RF I HV F ++EVS+F R F R
Sbjct: 70 LCGRQPKDFDVVTDATPEQVYRLFKRSRIIGRRFQIVHVRFGGEVIEVSTF----RAFQR 125
Query: 61 DFKYEFERPIGCDEKDFI----RWRN----CLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
D + ++ +E + W N L+RDFTIN L ++ +YD++ +DI
Sbjct: 126 DDDLDDDQHRAHEETGLVLRDNTWGNIEEDALRRDFTINALYYNIADFALYDFVNSRQDI 185
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
+ ++ + ++ED R+LRA R AA+LGF+ R T + ++ +L++ RL
Sbjct: 186 ERGIIRLIGDPQQRYREDPVRMLRAARFAAKLGFQLDRATRAPIPEMASLLLQVPPARLF 245
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLP-IQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E+ + G A S L K GL L P A + G + L+L+ N D
Sbjct: 246 DEVLKLFLSGHARDSFEQLRKLGLFAFLFPNTHEALESEQG----EVWERLILAAMDNTD 301
Query: 232 KLLAPDRPCHSSLWIAI 248
+ L+ ++P + A+
Sbjct: 302 RRLSENKPVTPAFLYAV 318
>gi|388548316|ref|ZP_10151565.1| poly(A) polymerase [Pseudomonas sp. M47T1]
gi|388273569|gb|EIK93182.1| poly(A) polymerase [Pseudomonas sp. M47T1]
Length = 463
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 126/267 (47%), Gaps = 35/267 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA ++V F ++G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQVRAEFRNARVIGRRFKLVHIHFGREIIEVATFRANHPQDDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + TA ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPVQRYQEDPVRMLRAVRFAAKLNFGIEKHTAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G+A + +L L + L P A H + ++ L
Sbjct: 235 REIPSARLFEECLKLFLSGNAADTFEMLVDLQLFDPLFPASA-----HSLEHQPTYTHTL 289
Query: 224 LS-LFSNLDKLLAPDRPCHSSLWIAIL 249
+S N D + +P + A L
Sbjct: 290 ISEALKNTDLRVKQGKPVTPAFLFAAL 316
>gi|422670237|ref|ZP_16730040.1| poly(A) polymerase, partial [Pseudomonas syringae pv. aceris str.
M302273]
gi|330974599|gb|EGH74665.1| poly(A) polymerase, partial [Pseudomonas syringae pv. aceris str.
M302273]
Length = 412
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 13 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 72
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 73 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 120
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 121 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRALAPML 180
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 181 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 240
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 241 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 290
>gi|288942459|ref|YP_003444699.1| poly(A) polymerase [Allochromatium vinosum DSM 180]
gi|288897831|gb|ADC63667.1| poly(A) polymerase [Allochromatium vinosum DSM 180]
Length = 445
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 121/256 (47%), Gaps = 16/256 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFD+ T A ++V +VF C ++G+RF + HVHF I+EV++F SG
Sbjct: 60 LLGHEPKDFDVATDATPEQVRQVFRNCRLIGRRFRLAHVHFGRDIIEVATFRGSGSDDGE 119
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R RD + G E+D L+RDFTIN L +D + DY GGI+D+R
Sbjct: 120 DADRQMRDGLIVRDNIYGSIEED------ALRRDFTINALYYDIADFALIDYAGGIDDLR 173
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+++ + ++ED R+LRA+R A +LGF T + L + + RL
Sbjct: 174 AGRLRLIGDPVKRYREDPVRMLRAVRFACKLGFTIEPATERPLFELGHLLRDIPAARLFD 233
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G L +GL L P A L + D + +N DK
Sbjct: 234 ELLKLFHSGYGLEVFEKLRHYGLFGHLFPATEACLAREDH---DFPITFVSRGLTNTDKR 290
Query: 234 LAPDRPCHSSLWIAIL 249
LA D+P + AIL
Sbjct: 291 LAEDKPITPAFLYAIL 306
>gi|339499890|ref|YP_004697925.1| poly(A) polymerase [Spirochaeta caldaria DSM 7334]
gi|338834239|gb|AEJ19417.1| poly(A) polymerase [Spirochaeta caldaria DSM 7334]
Length = 389
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 137/272 (50%), Gaps = 34/272 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++ + PKDFDI+TSA ++ R+F I+G+RF + HV+ +TI EV++F S R
Sbjct: 61 IVGKKPKDFDIVTSASPSQIKRLFRNARIIGRRFRLVHVYVGDTIYEVATFR-SLRDGHN 119
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
Y G E+D +R RDFT+N L +DP +++ DY+ G +DI+ ++ +
Sbjct: 120 GNTY------GTIEEDVLR------RDFTLNALFYDPKEQVVVDYVEGFKDIKTRLIRPI 167
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFS-------RETAHFVKHLSPSILKLDRGRLLM 173
IP S F++D R+LRA++ AA GFR S ++ AH + +SPS R
Sbjct: 168 IPLSVMFKDDPVRMLRAVKYAATTGFRLSLPLRWKIKQQAHLLDTVSPS-------RRTE 220
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ ++ G++ A + L KF L + L P + + K NL + LD+L
Sbjct: 221 ELFKIINSGNSFAIVDQLLKFSLYQYLQPNAVSMMSSDA-----KFKNLYMQSLLALDQL 275
Query: 234 LAPDRPCHSSLWIA--ILAFHKALSDQPRDPL 263
+ + S I+ I + + D ++P
Sbjct: 276 IKCGKELQSGEVISYFIRDYLNTIVDWKQEPF 307
>gi|237746883|ref|ZP_04577363.1| poly(A) polymerase [Oxalobacter formigenes HOxBLS]
gi|229378234|gb|EEO28325.1| poly(A) polymerase [Oxalobacter formigenes HOxBLS]
Length = 461
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 153/327 (46%), Gaps = 54/327 (16%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFD+ T A ++V R+F + ++G+RF I HV ++EV++F S
Sbjct: 66 LLGLKPKDFDVATDATPEQVKRLFRRAFVIGRRFQIVHVLLGQELIEVTTFRGSSTKPAL 125
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R RD + G E+D R RDFTIN + ++P +++ DY GG+ D
Sbjct: 126 KDDAGRLLRDNSF------GTQEEDAAR------RDFTINAMYYNPANQLLLDYHGGMND 173
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+R ++ + ++ED R+LR +R AA+LGF T + L+P I + RL
Sbjct: 174 LRNRTLKIIGDPEQRYREDPVRMLRIVRFAAKLGFSIDPATRAPIASLAPLINNVPSARL 233
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPI--------QAAYLVKHGFRRRDKRSNLL 223
EM +L G A + L+ L GL + LLP+ QAA+ ++ + D+R
Sbjct: 234 FDEMLKLLMSGHAMSCLKELRTRGLHKGLLPLLDVALEQPQAAHFIELALDKTDQR---- 289
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAI---LAFHKALSDQPRDPLVVAVFSLAVYNGGDMLE 280
++ ++P + LW + ++A + P LV A GD+LE
Sbjct: 290 ----IRENRRISPGFLFATLLWTQVEEKWEHYRAQGEHPIPALVAA--------AGDILE 337
Query: 281 A----VKIARRINKSHDESFCELLEPR 303
+ I RRI + D L++PR
Sbjct: 338 TQTEKLAIQRRI--ASDMKDIWLMQPR 362
>gi|260580633|ref|ZP_05848460.1| polyA polymerase [Haemophilus influenzae RdAW]
gi|260092695|gb|EEW76631.1| polyA polymerase [Haemophilus influenzae RdAW]
Length = 480
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 89 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 148
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 149 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 208
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 209 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 268
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P +AY +
Sbjct: 269 LLQAGQGVKTYRLLRQYGLFEQLFPALSAYFTE 301
>gi|421100248|ref|ZP_15560883.1| poly(A) polymerase [Leptospira borgpetersenii str. 200901122]
gi|410796732|gb|EKR98856.1| poly(A) polymerase [Leptospira borgpetersenii str. 200901122]
Length = 493
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 12/207 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + T+ ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTSKAIRKHKAELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLL 201
N + + + + GLLEVL
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGLLEVLF 268
>gi|311280885|ref|YP_003943116.1| poly(A) polymerase [Enterobacter cloacae SCF1]
gi|308750080|gb|ADO49832.1| poly(A) polymerase [Enterobacter cloacae SCF1]
Length = 473
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 81 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSAS 140
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG+ D
Sbjct: 141 DRVTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMRD 194
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+LG S ETA + L+ I + RL
Sbjct: 195 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMSISAETAEPIPRLATLINDVPPARL 254
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + RLL ++ L + L P Y ++G
Sbjct: 255 FEESLKLLQAGYGYETYRLLREYSLFQPLFPTITRYFTENG 295
>gi|386265567|ref|YP_005829059.1| Poly(A) polymerase I [Haemophilus influenzae R2846]
gi|309972803|gb|ADO96004.1| Poly(A) polymerase I [Haemophilus influenzae R2846]
Length = 452
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 15/219 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPI------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
K E + G E+D +R RDFT+N L ++P + DY GI+D
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAVR------RDFTVNALYYNPQDNTLRDYFEGIKD 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + T +QED R+LR+IR A+L + + ++ L+P + + RL
Sbjct: 175 LKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + RLL ++GL E L P ++Y +
Sbjct: 235 FDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSSYFTE 273
>gi|384082720|ref|ZP_09993895.1| poly(A) polymerase [gamma proteobacterium HIMB30]
Length = 442
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 112/213 (52%), Gaps = 11/213 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSG----- 55
+L + PKDFD+ TSA+ EV ++F + I+G+RF I HV I+EV++F S
Sbjct: 61 LLGKHPKDFDVATSAKPVEVQKLFRKARIIGRRFQIVHVRMGPEIIEVTTFRGSAENSHL 120
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
++ + + G E D +R RDFT+N L +DP + D++GG +D+
Sbjct: 121 QQANASGMLVRDNVFGSVEDDAVR------RDFTMNALYYDPSNHEVLDFVGGYDDLEDG 174
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T ++ED R+LRA+R +LG + +TA ++ L+P + + RL E+
Sbjct: 175 MIRIIGDPETRYREDPVRMLRAVRFVGKLGLQLEPDTAEPIRRLAPLLRDVSPSRLFDEI 234
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
+L G +A+ L K+ LL L P A L
Sbjct: 235 LKLLQAGHGQATFPELVKYDLLRPLFPQTEALL 267
>gi|378952882|ref|YP_005210370.1| protein PcnB [Pseudomonas fluorescens F113]
gi|359762896|gb|AEV64975.1| PcnB [Pseudomonas fluorescens F113]
Length = 465
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA +++ F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQIRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNRLIRLIGDPKQRYQEDPVRMLRAVRFAAKLDFGIEKHSAMPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G+A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGNAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|16272037|ref|NP_438236.1| polyA polymerase [Haemophilus influenzae Rd KW20]
gi|1172043|sp|P44439.1|PCNB_HAEIN RecName: Full=Probable poly(A) polymerase; Short=PAP
gi|1573011|gb|AAC21741.1| poly(A) polymerase (pcnB) [Haemophilus influenzae Rd KW20]
Length = 452
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 114/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 180
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 181 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 240
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P +AY +
Sbjct: 241 LLQAGQGVKTYRLLRQYGLFEQLFPALSAYFTE 273
>gi|456865354|gb|EMF83714.1| poly(A) polymerase [Leptospira weilii serovar Topaz str. LT2116]
Length = 494
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAMEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + T+ ++ + K R+L E
Sbjct: 182 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTSKAIRKHKVELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF--SNLDK 232
N + + + + GLLEVL K F + K+++ F +N+ K
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGLLEVLF--------KEAFEKERKKNSNFGEKFLETNIGK 293
Query: 233 LLA 235
LA
Sbjct: 294 RLA 296
>gi|440289057|ref|YP_007341822.1| poly(A) polymerase [Enterobacteriaceae bacterium strain FGI 57]
gi|440048579|gb|AGB79637.1| poly(A) polymerase [Enterobacteriaceae bacterium strain FGI 57]
Length = 475
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 132/264 (50%), Gaps = 18/264 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 82 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEDAQS 141
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 142 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 195
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ + ++ + T ++ED R+LRA+R AA+L R S ETA + L+ I + RL
Sbjct: 196 LEEGVIRLIGDPETRYREDPVRMLRAVRFAAKLSMRISEETAEPIPRLATLINDVPPARL 255
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + +LL ++ L + L P Y + G ++ ++ +F N D
Sbjct: 256 FEESLKLLQAGYGYDTYKLLREYNLFQPLFPTITRYFTEEGDSAMER---IISQVFKNTD 312
Query: 232 KLLAPDRPCHSSLWIAILAFHKAL 255
+ D + + A + ++ L
Sbjct: 313 NRIRNDMRVNPAFLFAAMFWYPLL 336
>gi|398336383|ref|ZP_10521088.1| tRNA nucleotidyltransferase [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 479
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 22/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 31 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 90
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDI+
Sbjct: 91 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIQN 144
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + TA ++ + K R+L E
Sbjct: 145 KVLRVIGDPDISFREDPVRMLRAVKFAEILGLNIEKTTAKAIRKHKIELEKASSSRMLEE 204
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF--SNLDK 232
N + + + + GLLEVL K F + K+++ F +N+ K
Sbjct: 205 YNKIFRTWKTSLIFQGMAEHGLLEVLF--------KEAFEKERKKNSSFGDKFLETNIGK 256
Query: 233 LLA 235
LA
Sbjct: 257 RLA 259
>gi|145633375|ref|ZP_01789105.1| polyA polymerase [Haemophilus influenzae 3655]
gi|145635248|ref|ZP_01790952.1| polyA polymerase [Haemophilus influenzae PittAA]
gi|229845401|ref|ZP_04465532.1| probable poly polymerase [Haemophilus influenzae 6P18H1]
gi|144985938|gb|EDJ92540.1| polyA polymerase [Haemophilus influenzae 3655]
gi|145267527|gb|EDK07527.1| polyA polymerase [Haemophilus influenzae PittAA]
gi|229811709|gb|EEP47407.1| probable poly polymerase [Haemophilus influenzae 6P18H1]
Length = 452
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 15/219 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPI------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
K E + G E+D +R RDFT+N L ++P + DY GI+D
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAVR------RDFTVNALYYNPQDNTLRDYFEGIKD 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + T +QED R+LR+IR A+L + + ++ L+P + + RL
Sbjct: 175 LKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + RLL ++GL E L P ++Y +
Sbjct: 235 FDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSSYFTE 273
>gi|213970146|ref|ZP_03398277.1| Poly(A) polymerase [Pseudomonas syringae pv. tomato T1]
gi|213925027|gb|EEB58591.1| Poly(A) polymerase [Pseudomonas syringae pv. tomato T1]
Length = 491
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 92 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 151
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 152 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 199
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 200 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRALAPML 259
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 260 RDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 319
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 320 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQDAAH 369
>gi|422660491|ref|ZP_16722902.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str.
M302278]
gi|331019095|gb|EGH99151.1| poly(A) polymerase [Pseudomonas syringae pv. lachrymans str.
M302278]
Length = 467
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRALAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQDAAH 345
>gi|422647265|ref|ZP_16710395.1| poly(A) polymerase [Pseudomonas syringae pv. maculicola str.
ES4326]
gi|330960809|gb|EGH61069.1| poly(A) polymerase [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 467
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRALAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQDAAH 345
>gi|145636731|ref|ZP_01792397.1| polyA polymerase [Haemophilus influenzae PittHH]
gi|145270029|gb|EDK09966.1| polyA polymerase [Haemophilus influenzae PittHH]
Length = 452
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 15/219 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPI------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
K E + G E+D +R RDFT+N L ++P + DY GI+D
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAVR------RDFTVNALYYNPQDNTLRDYFEGIKD 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + T +QED R+LR+IR A+L + + ++ L+P + + RL
Sbjct: 175 LKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + RLL ++GL E L P ++Y +
Sbjct: 235 FDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSSYFTE 273
>gi|120553603|ref|YP_957954.1| poly(A) polymerase [Marinobacter aquaeolei VT8]
gi|120323452|gb|ABM17767.1| poly(A) polymerase [Marinobacter aquaeolei VT8]
Length = 455
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 143/317 (45%), Gaps = 42/317 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS- 59
+L PKDFDI T+A +EV +F ++G+RF I HV F I+EV++F + R
Sbjct: 70 LLGGQPKDFDIATNATPEEVHDLFRNSRLIGRRFRIVHVVFGREIIEVTTFRGNARDTDD 129
Query: 60 ----------------RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
RD Y G E+D L+RDFTIN L + I
Sbjct: 130 DLADDEHKTSEHGLLLRDNVY------GNQEED------ALRRDFTINALYYCIRDFSII 177
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
D+ G++D++ +++ + T ++ED R+LRAIR AA+L F ET ++ L+P +
Sbjct: 178 DFANGVQDLKNRQIRLIGDPETRYREDPVRMLRAIRFAAKLDFEIEPETEAPIRELAPLL 237
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + + G EA+ RLL +GLL L P A LV + L+
Sbjct: 238 AHIPPARLFDEVLKLFSAGHGEATYRLLQDYGLLAPLFPETARALVA------GEPDELI 291
Query: 224 LSLFSNLDKLLAPDRPCH------SSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGD 277
L N D +A + + LW A+ + D DP+ A+ G
Sbjct: 292 LQALRNTDARIAQGKSVTPYFLFAAMLWPALQVEWRRRQDN-GDPVQPALHGAIGKVIGR 350
Query: 278 MLEAVKIARRINKSHDE 294
++A I +R + E
Sbjct: 351 QVQATAIPKRFSGPMKE 367
>gi|94311846|ref|YP_585056.1| poly(A) polymerase I polynucleotide adenylyltransferase
[Cupriavidus metallidurans CH34]
gi|93355698|gb|ABF09787.1| poly(A) polymerase I polynucleotide adenylyltransferase
[Cupriavidus metallidurans CH34]
Length = 529
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 132/278 (47%), Gaps = 29/278 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 70 LLGIKPKDFDVATNATPEQVQALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 129
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
GRR R D K G +D + W + +RDFTIN + +DP
Sbjct: 130 AVASETLPEGRRLKRAELDSKTHAIDASGRVLRDNV-WGTQAEDAERRDFTINAMYYDPA 188
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
A+ ++DY G+EDIR ++ + T ++ED R+LR +R AA+ GF T +
Sbjct: 189 AQTVHDYHHGMEDIRARTLRMIGDPVTRYREDPVRMLRVVRFAAKTGFSIDDHTREPIVG 248
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L+ I + RL EM +L G A ASL+ L K GL + LLP+ L + +R
Sbjct: 249 LASLIHNVPSARLFDEMLKLLMSGHAWASLQELRKAGLHKGLLPLLDVALEQPMGQR--- 305
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
+ N D+ + +P A L +H L
Sbjct: 306 ---FVQLALDNTDRRVQAGKPVSPGFLFASLLWHHVLQ 340
>gi|28868183|ref|NP_790802.1| poly(A) polymerase [Pseudomonas syringae pv. tomato str. DC3000]
gi|301384667|ref|ZP_07233085.1| poly(A) polymerase [Pseudomonas syringae pv. tomato Max13]
gi|302061944|ref|ZP_07253485.1| poly(A) polymerase [Pseudomonas syringae pv. tomato K40]
gi|302134196|ref|ZP_07260186.1| poly(A) polymerase [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422296944|ref|ZP_16384593.1| poly(A) polymerase [Pseudomonas avellanae BPIC 631]
gi|422586839|ref|ZP_16661510.1| poly(A) polymerase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|422654168|ref|ZP_16716917.1| poly(A) polymerase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|28851420|gb|AAO54497.1| poly(A) polymerase [Pseudomonas syringae pv. tomato str. DC3000]
gi|330872464|gb|EGH06613.1| poly(A) polymerase [Pseudomonas syringae pv. morsprunorum str.
M302280]
gi|330967200|gb|EGH67460.1| poly(A) polymerase [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|407991778|gb|EKG33553.1| poly(A) polymerase [Pseudomonas avellanae BPIC 631]
Length = 467
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRALAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQDAAH 345
>gi|401762334|ref|YP_006577341.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400173868|gb|AFP68717.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 447
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 135/278 (48%), Gaps = 9/278 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 55 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGAS 114
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D+++ +
Sbjct: 115 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLKEGLI 174
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S ETA + L+ I + RL E
Sbjct: 175 RLIGTPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLINDVPPARLFEEALK 234
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + +LL ++ L + L P Y ++G ++ ++ + N D + D
Sbjct: 235 LLQAGYGFETYKLLREYNLFQPLFPTITRYFTENGDSPMER---MIAQVLKNTDTRIQND 291
Query: 238 RPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNG 275
+ + A + ++ L R + LA Y+
Sbjct: 292 MRVNPAFLFAAMFWYPLLETAQR---ITQESGLAYYDA 326
>gi|342904082|ref|ZP_08725884.1| Putative polyA polymerase [Haemophilus haemolyticus M21621]
gi|342904616|ref|ZP_08726415.1| Putative polyA polymerase [Haemophilus haemolyticus M21621]
gi|341953037|gb|EGT79551.1| Putative polyA polymerase [Haemophilus haemolyticus M21621]
gi|341954091|gb|EGT80585.1| Putative polyA polymerase [Haemophilus haemolyticus M21621]
Length = 480
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 113/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 89 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 148
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI D++ K+
Sbjct: 149 NENQAKQSNEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFDGIHDLKAGKL 208
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 209 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 268
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P +AY +
Sbjct: 269 LLQAGQGVKTYRLLRQYGLFEQLFPALSAYFTE 301
>gi|296101313|ref|YP_003611459.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295055772|gb|ADF60510.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 447
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 55 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGAS 114
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D+++ +
Sbjct: 115 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLKEGLI 174
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S ETA + L+ I + RL E
Sbjct: 175 RLIGTPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLINDVPPARLFEEALK 234
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G A+ LL ++ L + L P Y ++G
Sbjct: 235 LLQAGHGFATYNLLREYNLFQPLFPSITRYFTENG 269
>gi|418292364|ref|ZP_12904307.1| poly(A) polymerase [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379063790|gb|EHY76533.1| poly(A) polymerase [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 464
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 41/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+D+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 67 LLQLNPKDYDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPEEDD 126
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP + I
Sbjct: 127 DDAAHLASRNESGR-ILRDNIY------GSLEDDAQR------RDFTINALYYDPTTERI 173
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
D+ G+ DIR ++ + +QED R+LRA+R AA+LGF R +A + L+
Sbjct: 174 LDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAKLGFEIERHSAEPIIDLADL 233
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+ + RL E+ + G AE + LL ++ L L P AA L R + L
Sbjct: 234 LDGIPSARLFDEVLKLFLGGKAERTFELLLEYDLFAPLFPASAAALE----RDPEYAGTL 289
Query: 223 LLSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+ + +N D + +P + LW A+ A + L D+ P+
Sbjct: 290 IRNALANTDLRIQQGKPVTPAFLFAALLWPALPARVQELQDRGMPPI 336
>gi|430805220|ref|ZP_19432335.1| poly(A) polymerase [Cupriavidus sp. HMR-1]
gi|429502612|gb|ELA00921.1| poly(A) polymerase [Cupriavidus sp. HMR-1]
Length = 529
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 130/273 (47%), Gaps = 29/273 (10%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST-------- 53
PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 75 PKDFDVATNATPEQVQALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVASE 134
Query: 54 ---SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPYAKIIY 103
GRR R D K G +D + W + +RDFTIN + +DP A+ ++
Sbjct: 135 TLPEGRRLKRAELDSKTHAIDASGRVLRDNV-WGTQAEDAERRDFTINAMYYDPAAQTVH 193
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+EDIR ++ + T ++ED R+LR +R AA+ GF T + L+ I
Sbjct: 194 DYHHGMEDIRARTLRMIGDPVTRYREDPVRMLRVVRFAAKTGFSIDDHTREPIVGLASLI 253
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL EM +L G A ASL+ L K GL + LLP+ L + +R +
Sbjct: 254 HNVPSARLFDEMLKLLMSGHAWASLQELRKAGLHKGLLPLLDVALEQPMGQR------FV 307
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
N D+ + +P A L +H L
Sbjct: 308 QLALDNTDRRVQAGKPVSPGFLFASLLWHHVLQ 340
>gi|416024933|ref|ZP_11568843.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4]
gi|320330254|gb|EFW86239.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 467
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ T+A ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATNATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRSLAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 345
>gi|417846310|ref|ZP_12492318.1| Putative polyA polymerase [Haemophilus haemolyticus M21639]
gi|341952712|gb|EGT79233.1| Putative polyA polymerase [Haemophilus haemolyticus M21639]
Length = 480
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 113/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 89 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 148
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI D++ K+
Sbjct: 149 NENQAKQSNEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFDGIHDLKAGKL 208
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 209 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 268
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P +AY +
Sbjct: 269 LLQAGQGVKTYRLLRQYGLFEQLFPALSAYFTE 301
>gi|192359588|ref|YP_001980912.1| polynucleotide adenylyltransferase [Cellvibrio japonicus Ueda107]
gi|190685753|gb|ACE83431.1| polynucleotide adenylyltransferase [Cellvibrio japonicus Ueda107]
Length = 457
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 11/207 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTS-----G 55
+L PKDFD+ T+A+ +EV R+F IVG+RF I HV ++EV++F
Sbjct: 73 LLGGHPKDFDVATNAKPEEVRRLFRGARIVGRRFQIVHVRIGREMIEVTTFRGHHDEDLN 132
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+ D + G E D +R RDF++N L +D I DY GG+ED++K
Sbjct: 133 HTRNEDGMLLRDNVYGTLETDAMR------RDFSVNALYYDLKTFSIIDYCGGMEDLKKR 186
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T ++ED RILRA+R AA+LGF TA ++ L +L + RL E+
Sbjct: 187 TLRIIGEPVTRYKEDPVRILRALRFAAKLGFALEPSTAKPIRPLGNLLLNVSEARLFEEV 246
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLP 202
+ GSA A+ L+ ++ LL+ L P
Sbjct: 247 LKLFLNGSATATFNLMREYDLLQQLFP 273
>gi|422405455|ref|ZP_16482498.1| poly(A) polymerase, partial [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330880377|gb|EGH14526.1| poly(A) polymerase [Pseudomonas syringae pv. glycinea str. race 4]
Length = 407
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 136/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ T+A ++V F I+G+RF + H+HF I+EV++F
Sbjct: 8 MLNITPKDFDVATNATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 67
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 68 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 115
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 116 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPIRSLAPML 175
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L E L P + L + SN L
Sbjct: 176 RDIPSARLFEEVLKLFLSGHAAPTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 235
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 236 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 285
>gi|416333730|ref|ZP_11670838.1| Poly(A) polymerase [Escherichia coli WV_060327]
gi|320197403|gb|EFW72017.1| Poly(A) polymerase [Escherichia coli WV_060327]
Length = 454
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S+ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISQETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|417843738|ref|ZP_12489806.1| Putative polyA polymerase [Haemophilus haemolyticus M21127]
gi|341948651|gb|EGT75271.1| Putative polyA polymerase [Haemophilus haemolyticus M21127]
Length = 480
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 113/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 89 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 148
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI D++ K+
Sbjct: 149 NENQAKQSNEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFDGIHDLKAGKL 208
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 209 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 268
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P +AY +
Sbjct: 269 LLQAGQGVKTYRLLRQYGLFEQLFPALSAYFTE 301
>gi|432469065|ref|ZP_19711128.1| Poly(A) polymerase [Escherichia coli KTE205]
gi|433071055|ref|ZP_20257772.1| Poly(A) polymerase [Escherichia coli KTE129]
gi|430988199|gb|ELD04699.1| Poly(A) polymerase [Escherichia coli KTE205]
gi|431595604|gb|ELI65597.1| Poly(A) polymerase [Escherichia coli KTE129]
Length = 454
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED RILRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRILRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|147117|gb|AAA24303.1| plasmid copy number protein [Escherichia coli]
Length = 410
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 22 LLGKKPKDFDVTTNATPEQVAKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 81
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 82 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 135
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 136 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 195
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 196 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 236
>gi|82702011|ref|YP_411577.1| poly(A) polymerase [Nitrosospira multiformis ATCC 25196]
gi|82410076|gb|ABB74185.1| poly(A) polymerase [Nitrosospira multiformis ATCC 25196]
Length = 471
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 128/261 (49%), Gaps = 22/261 (8%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSGRRFSR 60
PKDFD+ T+A +EV VF + I+G+RF + HV + VEVS+F +G +
Sbjct: 77 PKDFDVATNATPEEVRAVFRRSRIIGRRFRLVHVMWGAETVEVSTFRGGPSGETGGLGAD 136
Query: 61 DFKYEFERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+ E R + G E+D R RDFT+N L FDP + I+DY+ G ED++
Sbjct: 137 EHADEHGRLLRDNVFGSQEEDARR------RDFTVNALFFDPVHEEIWDYLNGYEDLKAR 190
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
+++ + ++ED R+LR +R+ A+LG +TA + L+P +L + RL EM
Sbjct: 191 RLRIIGDPVRRYREDPVRMLRVVRLGAKLGMEIDPDTAAPISELAPLLLHVPPSRLFDEM 250
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A A + L K GL LLP+ R + + N D+ +
Sbjct: 251 LKLLLSGHALACVTDLQKRGLHHGLLPMLDV------IREQPLGKRFITLALKNTDERVR 304
Query: 236 PDRPCHSSLWIAILAFHKALS 256
++P A L +H+ L+
Sbjct: 305 QEKPVSPGFLFAALLWHEVLA 325
>gi|330811775|ref|YP_004356237.1| polynucleotide adenylyltransferase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|423699343|ref|ZP_17673833.1| poly(A) polymerase [Pseudomonas fluorescens Q8r1-96]
gi|28932734|gb|AAO60158.1| polynucleotide adenylyltransferase [Pseudomonas fluorescens
Q8r1-96]
gi|327379883|gb|AEA71233.1| Putative polynucleotide adenylyltransferase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|387996991|gb|EIK58321.1| poly(A) polymerase [Pseudomonas fluorescens Q8r1-96]
Length = 465
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ TSA +++ F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLNITPKDFDVATSATPEQIRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNRLIRLIGDPKQRYQEDPVRMLRAVRFAAKLDFGIEKHSAVPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G+A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGNAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|398865270|ref|ZP_10620792.1| poly(A) polymerase [Pseudomonas sp. GM78]
gi|398243794|gb|EJN29373.1| poly(A) polymerase [Pseudomonas sp. GM78]
Length = 546
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 109/225 (48%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 147 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQSDE 206
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
S R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 207 EEDHNKSLSNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 254
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 255 DYANGVHDIRNQLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSATPIRELAPML 314
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 315 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 359
>gi|262199208|ref|YP_003270417.1| poly(A) polymerase [Haliangium ochraceum DSM 14365]
gi|262082555|gb|ACY18524.1| poly(A) polymerase [Haliangium ochraceum DSM 14365]
Length = 495
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 5/200 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+R PKDFD+ TSA ++ +F C I+G+RF + HV F + I+E S+F R S
Sbjct: 50 LLDRNPKDFDVATSATPNQIRDIFRNCRIIGRRFRLAHVFFGDKIIETSTF-----RASP 104
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
E E I D + +RDFTINGL +D A+ + DY+GG +D+ V+T+
Sbjct: 105 KHDDEGELLIRHDNVFGSATEDARRRDFTINGLFYDVRAEEVIDYVGGADDLDSRLVRTI 164
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F+ED R+LRAI+ AARLGF +T + I K R+ E+ +L
Sbjct: 165 GDPDIRFREDPVRMLRAIKFAARLGFDIEEQTYEALVRHRDEIRKCSPVRVGEEVYRLLR 224
Query: 181 YGSAEASLRLLWKFGLLEVL 200
G+A S+ LL + G+ VL
Sbjct: 225 GGAARRSMELLHETGIDVVL 244
>gi|416051543|ref|ZP_11577591.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347992976|gb|EGY34353.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 488
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ +F QC +VG+RF + HV F I+EV++F +G
Sbjct: 94 LLGKKPKDFDVATNARPEQIQAIFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHAEH 152
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GIED++ K
Sbjct: 153 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDYFNGIEDLKSGK 212
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 213 LRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLDKPSETPIKELSHLLKNIPPARLFEESL 272
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L GS + RLL ++GL E L P+ + Y + R ++L ++ D+ +
Sbjct: 273 KLLQGGSGVKTYRLLRQYGLFEQLFPLLSNYFTE---REDSMAEKMILQALTSTDERVVD 329
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 330 KLPINPAFLFA 340
>gi|73542462|ref|YP_296982.1| poly(A) polymerase [Ralstonia eutropha JMP134]
gi|72119875|gb|AAZ62138.1| Poly(A) polymerase, PcnB [Ralstonia eutropha JMP134]
Length = 509
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 132/278 (47%), Gaps = 29/278 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 70 LLGIKPKDFDVATNATPEQVQSLFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 129
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
GRR R D K G +D + W + +RDFTIN + +DP
Sbjct: 130 AVASETLPEGRRLKRSELDSKTHAIDASGRVLRDNV-WGSQAEDAERRDFTINAMYYDPA 188
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
A+ ++DY G+EDIR ++ + + ++ED R+LR +R AA+ GF T +
Sbjct: 189 AQTVHDYHHGMEDIRARTLRMIGDPTLRYREDPIRMLRVVRFAAKTGFGIDEATREPIGG 248
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L+ I + RL EM +L G A ASL+ L K GL + LLP+ L + +R
Sbjct: 249 LASLIHNVPSARLFDEMLKLLMSGHAWASLQELRKAGLHKGLLPLLDVALEQPMGQR--- 305
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
+ N D+ + +P A L +H L
Sbjct: 306 ---FVQLALDNTDRRVQAGKPVSPGFLFAALLWHHVLQ 340
>gi|421775154|ref|ZP_16211764.1| poly(A) polymerase I [Escherichia coli AD30]
gi|408459586|gb|EKJ83367.1| poly(A) polymerase I [Escherichia coli AD30]
Length = 454
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 152/314 (48%), Gaps = 29/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNIS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + +LL ++ L + L P Y ++G ++ ++ + N D
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMER---IIEQVLKNTD 292
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
+ D + + A + +H PL+ +A +G +A +A +N
Sbjct: 293 TRIHNDMRVNPAFLFAAMFWH---------PLLETAQKIAQESGLTYHDAFALA--MNDV 341
Query: 292 HDESFCELLEPRDL 305
DE+ L P+ L
Sbjct: 342 LDEACRSLAIPKRL 355
>gi|116052874|ref|YP_793191.1| poly(A) polymerase [Pseudomonas aeruginosa UCBPP-PA14]
gi|421170514|ref|ZP_15628457.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 700888]
gi|421176982|ref|ZP_15634639.1| poly(A) polymerase [Pseudomonas aeruginosa CI27]
gi|115588095|gb|ABJ14110.1| poly(A) polymerase [Pseudomonas aeruginosa UCBPP-PA14]
gi|404523027|gb|EKA33475.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 700888]
gi|404530070|gb|EKA40083.1| poly(A) polymerase [Pseudomonas aeruginosa CI27]
Length = 467
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 145/334 (43%), Gaps = 59/334 (17%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGIAPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHPEGQD 126
Query: 52 -------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYD 104
S R RD Y G E D R RDFTIN L FD ++ + D
Sbjct: 127 DGDSRASSNESGRILRDNVY------GSLEDDAQR------RDFTINALYFDVTSERLLD 174
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
Y G+ DIR ++ + + ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 YANGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKLDFEIEKHSATPIRRLAPLLR 234
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL 224
++ RL E+ + G AE + LL ++ L L P A L + D L+
Sbjct: 235 EIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFPASAKALQANP----DYTGKLIR 290
Query: 225 SLFSNLDKLLAPDRPCHSS------LWIAIL-------------------AFHKALSDQP 259
+N D + +P + LW A+ A H+ +S+Q
Sbjct: 291 QALANTDARIRQGKPVTPAFLFAALLWPALPARVAQLQEKGMPAIPAMQEAAHELISEQC 350
Query: 260 RDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHD 293
+ + F+L + DM E ++ RR K D
Sbjct: 351 QRIAIPKRFTLPIREIWDMQE--RLPRRQGKRAD 382
>gi|28198114|ref|NP_778428.1| polynucleotide adenylyltransferase [Xylella fastidiosa Temecula1]
gi|182680742|ref|YP_001828902.1| poly(A) polymerase [Xylella fastidiosa M23]
gi|386084259|ref|YP_006000541.1| polynucleotide adenyltransferase [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|417559540|ref|ZP_12210447.1| tRNA nucleotidyltransferase/polyA polymerase [Xylella fastidiosa
EB92.1]
gi|28056174|gb|AAO28077.1| polynucleotide adenyltransferase [Xylella fastidiosa Temecula1]
gi|182630852|gb|ACB91628.1| poly(A) polymerase [Xylella fastidiosa M23]
gi|307579206|gb|ADN63175.1| polynucleotide adenyltransferase [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|338177868|gb|EGO80906.1| tRNA nucleotidyltransferase/polyA polymerase [Xylella fastidiosa
EB92.1]
Length = 394
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 4/244 (1%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A +++ ++F C ++G+RF + HV F I+EV++F + S D + E
Sbjct: 51 PKDFDLATDATPEQIKQLFRSCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELE 110
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
R + CD + +RDFT N L + + DY+GG ED++ ++ +
Sbjct: 111 NGRLV-CDNVYGTIEDDATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVR 169
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAE 185
+QED R+LRA+R+AA+LGF TA + ++ + + RL E+ + G A
Sbjct: 170 RYQEDPVRMLRAVRLAAKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAV 229
Query: 186 ASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLW 245
S L FGL++VL P A L + R +L+ + DK + D P +
Sbjct: 230 VSFEALEDFGLIDVLFPESAKALRAN---RSGALRRVLIEGLHSTDKRVIKDEPVSPAFL 286
Query: 246 IAIL 249
A+L
Sbjct: 287 FALL 290
>gi|418749958|ref|ZP_13306246.1| poly(A) polymerase [Leptospira licerasiae str. MMD4847]
gi|418759290|ref|ZP_13315470.1| poly(A) polymerase [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384113781|gb|EIE00046.1| poly(A) polymerase [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404274843|gb|EJZ42161.1| poly(A) polymerase [Leptospira licerasiae str. MMD4847]
Length = 453
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 12/207 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F+ ++EVS+F S RF
Sbjct: 31 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFKGKVIEVSTFRSLPEHRFG 90
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDI+
Sbjct: 91 KPVEDQDYLIKRDNKFGTPQEDAAR------RDFTINALYYDIRNDSIVDYVGGYEDIQG 144
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
+++ + SF+ED R+LRA++ A LG + + T+ +K + K R+L E
Sbjct: 145 RQLRVIGNPDISFREDPVRMLRAVKFAVLLGLKIDKGTSRSIKKNVHELEKASSSRMLEE 204
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLL 201
N + + + + LLEVL
Sbjct: 205 YNKIFRTWRTSLIFQGMAQNSLLEVLF 231
>gi|359689371|ref|ZP_09259372.1| tRNA nucleotidyltransferase [Leptospira licerasiae serovar Varillal
str. MMD0835]
Length = 490
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 12/207 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F+ ++EVS+F S RF
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFKGKVIEVSTFRSLPEHRFG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDI+
Sbjct: 128 KPVEDQDYLIKRDNKFGTPQEDAAR------RDFTINALYYDIRNDSIVDYVGGYEDIQG 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
+++ + SF+ED R+LRA++ A LG + + T+ +K + K R+L E
Sbjct: 182 RQLRVIGNPDISFREDPVRMLRAVKFAVLLGLKIDKGTSRSIKKNVHELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLL 201
N + + + + LLEVL
Sbjct: 242 YNKIFRTWRTSLIFQGMAQNSLLEVLF 268
>gi|416084684|ref|ZP_11587068.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|348010342|gb|EGY50396.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
Length = 425
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ VF QC +VG+RF + HV F I+EV++F +G
Sbjct: 31 LLGKKPKDFDVATNARPEQIQAVFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHMEH 89
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GIED++ K
Sbjct: 90 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDYFNGIEDLKNGK 149
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 150 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPSARLFEESL 209
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L G+ + RLL ++GL E L P+ Y + R ++L ++ D+ +A
Sbjct: 210 KLLQGGNGVKTYRLLRQYGLFEQLFPLLQNYFTE---REDSMAEKMILRALTSTDERVAD 266
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 267 KLPINPAFLFA 277
>gi|116327797|ref|YP_797517.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331544|ref|YP_801262.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116120541|gb|ABJ78584.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116125233|gb|ABJ76504.1| tRNA nucleotidyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 489
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 12/207 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + T+ ++ + K R+L E
Sbjct: 182 KILRVIGDPDISFREDPVRMLRAVKFAEILGLDVEKTTSKAIRKHKAELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLL 201
N + + + + GLLEVL
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGLLEVLF 268
>gi|417839781|ref|ZP_12485950.1| Putative polyA polymerase [Haemophilus haemolyticus M19107]
gi|341951753|gb|EGT78308.1| Putative polyA polymerase [Haemophilus haemolyticus M19107]
Length = 480
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 113/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 89 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 148
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI D++ K+
Sbjct: 149 NENQAKQSNEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFDGIHDLKAGKL 208
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 209 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 268
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P +AY +
Sbjct: 269 LLQAGQGIKTYRLLRQYGLFEQLFPALSAYFTE 301
>gi|71276370|ref|ZP_00652647.1| Poly(A) polymerase [Xylella fastidiosa Dixon]
gi|170729425|ref|YP_001774858.1| polynucleotide adenyltransferase [Xylella fastidiosa M12]
gi|71162832|gb|EAO12557.1| Poly(A) polymerase [Xylella fastidiosa Dixon]
gi|71728799|gb|EAO30940.1| Poly(A) polymerase [Xylella fastidiosa Ann-1]
gi|71731594|gb|EAO33655.1| Poly(A) polymerase [Xylella fastidiosa Ann-1]
gi|167964218|gb|ACA11228.1| polynucleotide adenyltransferase [Xylella fastidiosa M12]
Length = 421
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 122/244 (50%), Gaps = 4/244 (1%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A +++ ++F C ++G+RF + HV F I+EV++F + S D + E
Sbjct: 51 PKDFDLATDATPEQIKQLFRSCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELE 110
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
R + CD + +RDFT N L + + DY+GG ED++ ++ +
Sbjct: 111 NGRLV-CDNVYGTIEDDATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVR 169
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAE 185
+QED R+LRA+R+AA+LGF TA + ++ + + RL E+ + G A
Sbjct: 170 RYQEDPVRMLRAVRLAAKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAV 229
Query: 186 ASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLW 245
S L FGL++VL P A L + R +L+ + DK + D P +
Sbjct: 230 VSFEALEDFGLIDVLFPESAKALRAN---RSGALRRVLIEGLHSTDKRVIKDEPVSPAFL 286
Query: 246 IAIL 249
A+L
Sbjct: 287 FALL 290
>gi|15599921|ref|NP_253415.1| poly(A) polymerase [Pseudomonas aeruginosa PAO1]
gi|107103826|ref|ZP_01367744.1| hypothetical protein PaerPA_01004897 [Pseudomonas aeruginosa PACS2]
gi|218893822|ref|YP_002442691.1| poly(A) polymerase [Pseudomonas aeruginosa LESB58]
gi|254238536|ref|ZP_04931859.1| poly(A) polymerase [Pseudomonas aeruginosa C3719]
gi|254244371|ref|ZP_04937693.1| poly(A) polymerase [Pseudomonas aeruginosa 2192]
gi|296391553|ref|ZP_06881028.1| poly(A) polymerase [Pseudomonas aeruginosa PAb1]
gi|313109707|ref|ZP_07795647.1| LOW QUALITY PROTEIN: poly(A) polymerase [Pseudomonas aeruginosa
39016]
gi|355642709|ref|ZP_09052843.1| hypothetical protein HMPREF1030_01929 [Pseudomonas sp. 2_1_26]
gi|386060895|ref|YP_005977417.1| poly(A) polymerase [Pseudomonas aeruginosa M18]
gi|386063776|ref|YP_005979080.1| poly(A) polymerase [Pseudomonas aeruginosa NCGM2.S1]
gi|392986399|ref|YP_006484986.1| poly(A) polymerase [Pseudomonas aeruginosa DK2]
gi|416856609|ref|ZP_11912178.1| poly(A) polymerase [Pseudomonas aeruginosa 138244]
gi|416873689|ref|ZP_11917664.1| poly(A) polymerase [Pseudomonas aeruginosa 152504]
gi|418586275|ref|ZP_13150319.1| poly(A) polymerase [Pseudomonas aeruginosa MPAO1/P1]
gi|418592907|ref|ZP_13156767.1| poly(A) polymerase [Pseudomonas aeruginosa MPAO1/P2]
gi|419751501|ref|ZP_14277912.1| poly(A) polymerase [Pseudomonas aeruginosa PADK2_CF510]
gi|420141921|ref|ZP_14649556.1| poly(A) polymerase [Pseudomonas aeruginosa CIG1]
gi|421156247|ref|ZP_15615697.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 14886]
gi|421163312|ref|ZP_15622033.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 25324]
gi|421182801|ref|ZP_15640271.1| poly(A) polymerase [Pseudomonas aeruginosa E2]
gi|421519288|ref|ZP_15965959.1| poly(A) polymerase [Pseudomonas aeruginosa PAO579]
gi|424944487|ref|ZP_18360250.1| poly(A) polymerase [Pseudomonas aeruginosa NCMG1179]
gi|451988322|ref|ZP_21936456.1| Poly(A) polymerase [Pseudomonas aeruginosa 18A]
gi|9950987|gb|AAG08113.1|AE004886_5 poly(A) polymerase [Pseudomonas aeruginosa PAO1]
gi|126170467|gb|EAZ55978.1| poly(A) polymerase [Pseudomonas aeruginosa C3719]
gi|126197749|gb|EAZ61812.1| poly(A) polymerase [Pseudomonas aeruginosa 2192]
gi|218774050|emb|CAW29866.1| poly(A) polymerase [Pseudomonas aeruginosa LESB58]
gi|310882149|gb|EFQ40743.1| LOW QUALITY PROTEIN: poly(A) polymerase [Pseudomonas aeruginosa
39016]
gi|334841731|gb|EGM20354.1| poly(A) polymerase [Pseudomonas aeruginosa 138244]
gi|334844379|gb|EGM22954.1| poly(A) polymerase [Pseudomonas aeruginosa 152504]
gi|346060933|dbj|GAA20816.1| poly(A) polymerase [Pseudomonas aeruginosa NCMG1179]
gi|347307201|gb|AEO77315.1| poly(A) polymerase [Pseudomonas aeruginosa M18]
gi|348032335|dbj|BAK87695.1| poly(A) polymerase [Pseudomonas aeruginosa NCGM2.S1]
gi|354830147|gb|EHF14202.1| hypothetical protein HMPREF1030_01929 [Pseudomonas sp. 2_1_26]
gi|375043415|gb|EHS36041.1| poly(A) polymerase [Pseudomonas aeruginosa MPAO1/P1]
gi|375048256|gb|EHS40783.1| poly(A) polymerase [Pseudomonas aeruginosa MPAO1/P2]
gi|384401963|gb|EIE48315.1| poly(A) polymerase [Pseudomonas aeruginosa PADK2_CF510]
gi|392321904|gb|AFM67284.1| poly(A) polymerase [Pseudomonas aeruginosa DK2]
gi|403245316|gb|EJY59137.1| poly(A) polymerase [Pseudomonas aeruginosa CIG1]
gi|404345207|gb|EJZ71559.1| poly(A) polymerase [Pseudomonas aeruginosa PAO579]
gi|404519292|gb|EKA30060.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 14886]
gi|404529123|gb|EKA39174.1| poly(A) polymerase [Pseudomonas aeruginosa ATCC 25324]
gi|404541243|gb|EKA50608.1| poly(A) polymerase [Pseudomonas aeruginosa E2]
gi|451753975|emb|CCQ88979.1| Poly(A) polymerase [Pseudomonas aeruginosa 18A]
gi|453043978|gb|EME91705.1| poly(A) polymerase [Pseudomonas aeruginosa PA21_ST175]
Length = 467
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 145/334 (43%), Gaps = 59/334 (17%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGIAPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHPEGQD 126
Query: 52 -------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYD 104
S R RD Y G E D R RDFTIN L FD ++ + D
Sbjct: 127 DGDSRASSNESGRILRDNVY------GSLEDDAQR------RDFTINALYFDVTSERLLD 174
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
Y G+ DIR ++ + + ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 YANGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKLDFEIEKHSAAPIRRLAPLLR 234
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL 224
++ RL E+ + G AE + LL ++ L L P A L + D L+
Sbjct: 235 EIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFPASAKALQANP----DYTGKLIR 290
Query: 225 SLFSNLDKLLAPDRPCHSS------LWIAIL-------------------AFHKALSDQP 259
+N D + +P + LW A+ A H+ +S+Q
Sbjct: 291 QALANTDARIRQGKPVTPAFLFAALLWPALPARVAQLQEKGMPAIPAMQEAAHELISEQC 350
Query: 260 RDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHD 293
+ + F+L + DM E ++ RR K D
Sbjct: 351 QRIAIPKRFTLPIREIWDMQE--RLPRRQGKRAD 382
>gi|418721117|ref|ZP_13280305.1| poly(A) polymerase [Leptospira borgpetersenii str. UI 09149]
gi|418735126|ref|ZP_13291538.1| poly(A) polymerase [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|421093081|ref|ZP_15553808.1| poly(A) polymerase [Leptospira borgpetersenii str. 200801926]
gi|410364044|gb|EKP15070.1| poly(A) polymerase [Leptospira borgpetersenii str. 200801926]
gi|410742596|gb|EKQ91344.1| poly(A) polymerase [Leptospira borgpetersenii str. UI 09149]
gi|410749382|gb|EKR02274.1| poly(A) polymerase [Leptospira borgpetersenii serovar Castellonis
str. 200801910]
gi|456891108|gb|EMG01850.1| poly(A) polymerase [Leptospira borgpetersenii str. 200701203]
Length = 489
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 108/207 (52%), Gaps = 12/207 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L R PKDFD++T+A ++ ++F+ C I+G+RF I H+ F ++EVS+F S R
Sbjct: 68 LLGRKPKDFDVVTNATPNQIKKIFNNCRIIGRRFKIVHILFRGKVIEVSTFRSLPDYRLG 127
Query: 60 R-----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D+ + + G ++D R RDFTIN L +D I DY+GG EDIR
Sbjct: 128 KAVEDQDYLIKRDNKFGTPQEDAAR------RDFTINSLYYDVRNDSIIDYVGGFEDIRN 181
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + SF+ED R+LRA++ A LG + T+ ++ + K R+L E
Sbjct: 182 KILRVIGDPDISFREDPVRMLRAVKFAEILGLDVEKTTSKAIRKHKAELEKASSSRMLEE 241
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLL 201
N + + + + GLLEVL
Sbjct: 242 YNKIFRTWKTSLIFQGMAEHGLLEVLF 268
>gi|170719922|ref|YP_001747610.1| poly(A) polymerase [Pseudomonas putida W619]
gi|169757925|gb|ACA71241.1| poly(A) polymerase [Pseudomonas putida W619]
Length = 462
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 123/267 (46%), Gaps = 36/267 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQ 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 127 GDSHRSSHNASGR-ILRDNVY------GSLEEDAQR------RDFTINALYYDPVSERVL 173
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 174 DYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTFQPIRGLAPLL 233
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G +L L E L P A H R ++ L
Sbjct: 234 REIPPARLFEECLKLFLSGQGAIVFEMLVDLALFEPLFPASA-----HALEERPTYTHTL 288
Query: 224 LS-LFSNLDKLLAPDRPCHSSLWIAIL 249
+S SN D + +P + A L
Sbjct: 289 ISQALSNTDLRIKQGKPVTPAFLFAAL 315
>gi|85058468|ref|YP_454170.1| poly(A) polymerase I [Sodalis glossinidius str. 'morsitans']
gi|84778988|dbj|BAE73765.1| poly(A) polymerase I [Sodalis glossinidius str. 'morsitans']
Length = 470
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 138/276 (50%), Gaps = 27/276 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + PKDFDI TSA +++ ++F C +VG+RF + HV F I+EV++F
Sbjct: 79 LLGKKPKDFDITTSATPEQMRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHQVLEP 138
Query: 52 ---STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
+T ++ + G E+D R RDF++N L + + DY GG
Sbjct: 139 EEGATGAALTGQNGMLLRDNIFGSIEEDAQR------RDFSVNSLYYSVADFTLRDYTGG 192
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
++D+++ ++ + T ++ED R+LRA+R AA+L SRETA + L+ + +
Sbjct: 193 LKDLQEGTIRLIGDPETRYREDPVRMLRAVRFAAKLDMTISRETAEPIPRLAALLHDIPP 252
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E +L G EA+ LL ++ L + L P+ + +HG ++ +++ + +
Sbjct: 253 ARLFEEALKLLQAGYGEATYHLLCEYQLFQPLFPLISRNFTEHGDSYMEQ---MVIRVLA 309
Query: 229 NLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
N D+ L D + + LW +L + L+ +
Sbjct: 310 NTDQRLRSDMRVNPAFLFAAMLWYPLLEHAQKLTQE 345
>gi|378696133|ref|YP_005178091.1| poly(A) polymerase I [Haemophilus influenzae 10810]
gi|301168656|emb|CBW28247.1| poly(A) polymerase I [Haemophilus influenzae 10810]
Length = 452
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 180
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 181 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 240
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P ++Y +
Sbjct: 241 LLQAGQGVKTYRLLRQYGLFEQLFPALSSYFTE 273
>gi|401677394|ref|ZP_10809369.1| poly(A) polymerase I [Enterobacter sp. SST3]
gi|400215242|gb|EJO46153.1| poly(A) polymerase I [Enterobacter sp. SST3]
Length = 447
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 55 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGAS 114
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D+++ +
Sbjct: 115 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLKEGLI 174
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S ETA + L+ I + RL E
Sbjct: 175 RLIGTPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLINDVPPARLFEEALK 234
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + LL ++ L + L P Y ++G
Sbjct: 235 LLQAGHGFETYNLLREYNLFQPLFPTITRYFTENG 269
>gi|152998010|ref|YP_001342845.1| poly(A) polymerase [Marinomonas sp. MWYL1]
gi|150838934|gb|ABR72910.1| poly(A) polymerase [Marinomonas sp. MWYL1]
Length = 484
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 147/306 (48%), Gaps = 26/306 (8%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFSRDFKY 64
PKDFD++T+A +EV +FS ++G+RF + HV F I+EVS+F + S + S D
Sbjct: 74 PKDFDVVTNATPEEVHTIFSNSRLIGRRFKLVHVTFGREIIEVSTFRANSAQDDSDDDDT 133
Query: 65 EFERPIGCDE---------KDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ G D +D + + +RDFT N L ++ I+DY GG++DI
Sbjct: 134 QNSSLKGKDSARSAHGIVLRDNVYGNIEEDAERRDFTFNALYYNVKDFSIHDYCGGLKDI 193
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
+++ + A +QED R+LRAIR A +LGF ETA +K ++ + + RL
Sbjct: 194 ENKQIRIIGDARQRYQEDPVRMLRAIRFAGKLGFELEAETAAPIKEMAHLLDHIPPARLF 253
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRD-KRSNLLLSLFSNLD 231
E+ +L G+ + LL ++GL L P A L++ G++R D +L N D
Sbjct: 254 EEVLKLLGSGNGIETFHLLRQYGLFRYLFPDTDA-LLQSGWKRNDIDPEAFILQGLKNTD 312
Query: 232 ------KLLAPDRPCHSSLWIAILAFHKALSDQ--PRDPLVVAVFSLAVYNGGDMLEAVK 283
K AP LW ++ H+ Q P P + ++ + N + +
Sbjct: 313 DRIQSGKTTAPYFLYAVLLWPSVALRHEEFQAQGMPATPALHQAANMVLDN---QVASTA 369
Query: 284 IARRIN 289
I RR +
Sbjct: 370 IPRRFS 375
>gi|389735973|ref|ZP_10189578.1| poly(A) polymerase [Rhodanobacter sp. 115]
gi|388440106|gb|EIL96520.1| poly(A) polymerase [Rhodanobacter sp. 115]
Length = 436
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 150/317 (47%), Gaps = 28/317 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ TSA EV ++F C ++G+RF + HV F I+EV++F +G
Sbjct: 48 LLGGKPKDFDVATSATPDEVKKLFRNCRLIGRRFRLAHVVFGPEIIEVATFRGTGEEEGN 107
Query: 61 DFKYEF-------ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D + + G E+D +R RDF +N + +D + DY+GG++D+
Sbjct: 108 DGERRIVDGRIVRDNVWGTIEEDAVR------RDFRVNAMYYDISDFSVRDYVGGMQDLE 161
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LRA R+AA+LGFR A L + + RL
Sbjct: 162 DRVLRLIGDPVTRYREDPVRMLRAARLAAKLGFRIDTAAAKPFAELGDLLTEAAPARLFD 221
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDK 232
E M G+ S +L K GLLE + P A L +R D+ L+ +N D+
Sbjct: 222 ESLKMFLAGNGLKSFHMLEKCGLLEFMFPATARAL-----KRGDEALRALVEQGLANTDE 276
Query: 233 LLAPDRPCHSSLWIAILAFHK------ALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIAR 286
+A + + A+L + + A +Q +D A A++ G+ + V I R
Sbjct: 277 RVAEGKSVTPAFLFAVLLWGEVRDQAHAWIEQGKDN-TEAWARAALHVVGEQCQRVAIPR 335
Query: 287 RINKSHDESFCELLEPR 303
R + +E + L+PR
Sbjct: 336 RFTFTMEEIWS--LQPR 350
>gi|443473699|ref|ZP_21063721.1| Poly(A) polymerase [Pseudomonas pseudoalcaligenes KF707]
gi|442904573|gb|ELS29550.1| Poly(A) polymerase [Pseudomonas pseudoalcaligenes KF707]
Length = 468
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 132/287 (45%), Gaps = 41/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L+ PKDFD+ T+A ++V F ++G+RF + HV F I+EV++F
Sbjct: 67 LLDLRPKDFDVATNATPEQVRAEFRNARVIGRRFKLAHVQFGREIIEVATFRANHPQGEE 126
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP + I
Sbjct: 127 EEDNNQAARNESGR-ILRDNVY------GSLEDDAQR------RDFTINALYYDPTTERI 173
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
DY G+ DIR V+ + +QED R+LRA R AA+LGF + +A ++ L+P
Sbjct: 174 LDYAHGVHDIRNRLVRLIGIPEQRYQEDPVRMLRAARFAAKLGFEIEKHSAAPIRQLAPL 233
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+ + RL E+ + G AE + LL ++ L L P AA L R + L
Sbjct: 234 LRDIPSARLFDEVLKLFLSGKAERTFDLLVQYDLFAPLFPASAAALE----RDPEYTGRL 289
Query: 223 LLSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+ N D+ + +P + LW A+ A L ++ P+
Sbjct: 290 IRQALINTDERIHQGKPVTPAFLFAALLWPALPARAALLQERGMPPI 336
>gi|365967695|ref|YP_004949257.1| polyA polymerase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|416074936|ref|ZP_11584784.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|444344104|ref|ZP_21152419.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|444348165|ref|ZP_21155890.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|348006551|gb|EGY46960.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|365746608|gb|AEW77513.1| polyA polymerase [Aggregatibacter actinomycetemcomitans ANH9381]
gi|443544742|gb|ELT54675.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|443547631|gb|ELT57092.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
Length = 432
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ VF QC +VG+RF + HV F I+EV++F +G
Sbjct: 38 LLGKKPKDFDVATNARPEQIQAVFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHMEH 96
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GIED++ K
Sbjct: 97 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDYFNGIEDLKNGK 156
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 157 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPSARLFEESL 216
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L G+ + RLL ++GL E L P+ Y + R ++L ++ D+ +A
Sbjct: 217 KLLQGGNGVKTYRLLRQYGLFEQLFPLLQNYFTE---REDSMAEKMILRALTSTDERVAD 273
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 274 KLPINPAFLFA 284
>gi|415768871|ref|ZP_11484025.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D17P-2]
gi|348657717|gb|EGY75303.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 648
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ VF QC +VG+RF + HV F I+EV++F +G
Sbjct: 94 LLGKKPKDFDVATNARPEQIQAVFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHMEH 152
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GI+D++ K
Sbjct: 153 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDYFNGIDDLKNGK 212
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 213 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESL 272
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L GS + RLL ++GL E L P+ Y + R ++L ++ D+ +A
Sbjct: 273 KLLQGGSGVKTYRLLRQYGLFEQLFPLLQNYFTE---REDSMAEKMILRALTSTDERVAD 329
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 330 KLPINPAFLFA 340
>gi|345863219|ref|ZP_08815431.1| poly(A) polymerase [endosymbiont of Tevnia jerichonana (vent Tica)]
gi|345878930|ref|ZP_08830620.1| chaperone protein dnaK [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|344224058|gb|EGV50471.1| chaperone protein dnaK [endosymbiont of Riftia pachyptila (vent
Ph05)]
gi|345125680|gb|EGW55548.1| poly(A) polymerase [endosymbiont of Tevnia jerichonana (vent Tica)]
Length = 405
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 124/252 (49%), Gaps = 3/252 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFD+ T A ++V +VF C ++G+RF + HVHF I+EV++F + G +
Sbjct: 23 LLGREPKDFDVATDARPEQVRQVFRNCRLIGRRFRLAHVHFGREIIEVATFRSMGDGEQQ 82
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D + I D + +RDFTIN L +D + DY G++D+R+ +++ +
Sbjct: 83 DQRQVENGMILRDNVYGTIDEDAQRRDFTINALYYDIEDFSVLDYANGMQDLREGRLRLL 142
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
++ED R+LRA+R A +LGF +T ++ LS + ++ RL E+ +
Sbjct: 143 GDPEQRYREDPVRMLRAVRFAGKLGFLIEEQTEAPIEPLSGLLQEVPSARLYEEVLKLFL 202
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
GSA + L +GL L P L D + SN D+ + ++P
Sbjct: 203 GGSALETFEKLRHYGLFSRLFPATEEALSHE---EHDFPITFVNRGLSNTDQRIREEKPV 259
Query: 241 HSSLWIAILAFH 252
+ A+L +
Sbjct: 260 TPAFLFAVLLWE 271
>gi|167035687|ref|YP_001670918.1| poly(A) polymerase [Pseudomonas putida GB-1]
gi|166862175|gb|ABZ00583.1| poly(A) polymerase [Pseudomonas putida GB-1]
Length = 462
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQ 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 GDAHRSSHNASGR-ILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 173
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 174 DYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTFQPIRGLAPML 233
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G + +L L E L P A H R ++ L
Sbjct: 234 REIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASA-----HALDERPTYTHTL 288
Query: 224 LS-LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+S +N D + +P + LW A+ A L +Q P+
Sbjct: 289 ISQALNNTDLRVKQGKPVTPAFLFAALLWPALPARVLHLQNQGVPPI 335
>gi|319896476|ref|YP_004134669.1| poly polymerase [Haemophilus influenzae F3031]
gi|317431978|emb|CBY80326.1| probable poly polymerase [Haemophilus influenzae F3031]
Length = 452
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 180
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 181 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 240
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P ++Y +
Sbjct: 241 LLQAGQGVKTYRLLRQYGLFEQLFPALSSYFTE 273
>gi|398857401|ref|ZP_10613101.1| poly(A) polymerase [Pseudomonas sp. GM79]
gi|398240992|gb|EJN26655.1| poly(A) polymerase [Pseudomonas sp. GM79]
Length = 466
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 DEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSATPIRELAPLL 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P AA L
Sbjct: 235 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAAAL 279
>gi|325276181|ref|ZP_08141985.1| poly(A) polymerase [Pseudomonas sp. TJI-51]
gi|324098690|gb|EGB96732.1| poly(A) polymerase [Pseudomonas sp. TJI-51]
Length = 462
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 124/267 (46%), Gaps = 36/267 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAPHTEDDQ 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 NDSHRSSHNASGR-ILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 173
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 174 DYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTFKPIRELAPLL 233
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G + +L L E L P A H R ++ L
Sbjct: 234 REIPPARLFEESLKLFLSGQGAIAFEMLVDLELFEPLFPASA-----HALEERPTYTHTL 288
Query: 224 LS-LFSNLDKLLAPDRPCHSSLWIAIL 249
+S +N D + +P + A L
Sbjct: 289 ISQALNNTDLRVKQGKPVTPAFLFAAL 315
>gi|325983710|ref|YP_004296112.1| poly(A) polymerase [Nitrosomonas sp. AL212]
gi|325533229|gb|ADZ27950.1| poly(A) polymerase [Nitrosomonas sp. AL212]
Length = 462
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 130/266 (48%), Gaps = 22/266 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L +PKDFD+ T+A +EV ++F + I+G+RF + HV VEVS+F
Sbjct: 67 LLGLVPKDFDVATNATPEEVHKIFRRSRIIGRRFRLVHVMCGAETVEVSTFRGPSPDEDE 126
Query: 61 D--FKYEFERP--------IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
D FK ++ G E+D +R RDFT+N L +DP + I DY+ G E
Sbjct: 127 DPAFKQSIDQHGRLLHDNVFGSQEEDAMR------RDFTVNALFYDPVKEEILDYLHGYE 180
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
DI+ +++ + F+ED R+LRA+R+A +L + +TA + L+P + + R
Sbjct: 181 DIKARRMRIIGDPVQRFREDPIRLLRAVRLATKLDMQIDAQTAKPIGDLAPLLQNVPPSR 240
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L EM +L G A A + L GL LLP+ L + R + N
Sbjct: 241 LFDEMLKLLLSGHALACVVELRMRGLHHGLLPMLDVILEQPLGER------FITIALKNT 294
Query: 231 DKLLAPDRPCHSSLWIAILAFHKALS 256
D+ + ++P AIL +H+ LS
Sbjct: 295 DERVRQNKPVSPGFLFAILLWHEVLS 320
>gi|359780726|ref|ZP_09283951.1| poly(A) polymerase [Pseudomonas psychrotolerans L19]
gi|359370786|gb|EHK71352.1| poly(A) polymerase [Pseudomonas psychrotolerans L19]
Length = 463
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 120/260 (46%), Gaps = 32/260 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----------STS 54
PKDFD+ TSA ++V F ++G+RF + HVHF I+EV++F T
Sbjct: 72 PKDFDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPTGDAEDETQ 131
Query: 55 GRRFS-----RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
G R RD Y G E+D R RDFTIN L +D + I DY G
Sbjct: 132 GSRHESGRILRDNIY------GNQEQDAQR------RDFTINALYYDASGERILDYANGT 179
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
+DIR +++ + + ED R+LRA+R AA+L F TA + L+P + +
Sbjct: 180 QDIRLRQIRLIGDPEQRYLEDPVRMLRAVRFAAKLDFEIEAATAEPISRLAPLLRDIPAP 239
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSN 229
RL E+ +L G AE + LL ++GL L P L + + +L+ +N
Sbjct: 240 RLFDEVIKLLLGGKAERTFELLCQYGLFAPLFPASGEALERDP----EYAGSLIRQALAN 295
Query: 230 LDKLLAPDRPCHSSLWIAIL 249
D + +P + A L
Sbjct: 296 TDARIREGKPVTPAFLFAAL 315
>gi|260582019|ref|ZP_05849814.1| polyA polymerase [Haemophilus influenzae NT127]
gi|260094909|gb|EEW78802.1| polyA polymerase [Haemophilus influenzae NT127]
Length = 480
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 115/219 (52%), Gaps = 15/219 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 89 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 148
Query: 58 FSRDFKYEFERPI------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
K E + G E+D +R RDFT+N L ++P + DY GI+D
Sbjct: 149 NENQAKQSNEGMLLRDNVYGTIEQDAVR------RDFTVNALYYNPQDNTLRDYFEGIKD 202
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ +K++ + T +QED R+LR+IR A+L + + + L+P + + RL
Sbjct: 203 LKASKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPISELAPLLKNIPPARL 262
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + RLL ++GL E L P + Y +
Sbjct: 263 FDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSPYFTE 301
>gi|410613955|ref|ZP_11325007.1| poly(A) polymerase [Glaciecola psychrophila 170]
gi|410166455|dbj|GAC38896.1| poly(A) polymerase [Glaciecola psychrophila 170]
Length = 419
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 117/224 (52%), Gaps = 16/224 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + PKDFD+ T A +++ +F C ++G+RF + H+ F ++EV++F
Sbjct: 30 LLGKEPKDFDVTTDATPEQIKGLFRNCRLIGRRFRLAHIVFGREVIEVATFRGHHENNDE 89
Query: 52 -STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+ + S D + + G E+D R RDFTIN + ++ I D+ GG+E
Sbjct: 90 GDSKDSKQSDDGQLMRDNVFGSIEEDAER------RDFTINAMYYNIADYSISDFAGGME 143
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
I+ K+ + T ++ED R+LRA+R AA+L S E+A +K ++P + + R
Sbjct: 144 AIKNKKITLIGDPETRYREDPVRMLRAVRFAAKLDMHISEESAEPIKRMAPLMANIPPAR 203
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFR 214
L E+ +L G A+ +LL +F L E L P A L++ G R
Sbjct: 204 LFEEILKLLLSGQGLATYKLLSEFHLFEPLFPQLAPLLLQPGSR 247
>gi|432375068|ref|ZP_19618091.1| Poly(A) polymerase [Escherichia coli KTE11]
gi|430892326|gb|ELC14818.1| Poly(A) polymerase [Escherichia coli KTE11]
Length = 454
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|302879356|ref|YP_003847920.1| poly(A) polymerase [Gallionella capsiferriformans ES-2]
gi|302582145|gb|ADL56156.1| poly(A) polymerase [Gallionella capsiferriformans ES-2]
Length = 453
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 130/266 (48%), Gaps = 28/266 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L++IPKDFD+ T A +EV RVF + I+G+RF + HV F +VEV++F
Sbjct: 66 LLDKIPKDFDVATDATPEEVKRVFRRSRIIGRRFRLVHVMFGEELVEVATFRCMIDTEDA 125
Query: 52 -STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+ + R RD ++ G E+D R RDFT N L +DP + IYDY G +
Sbjct: 126 QTDAHGRLLRDNEF------GDQEQDAAR------RDFTANALFYDPTTQEIYDYHQGYQ 173
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D R ++ + ++ED R+LRA+R++A+LG TA + L + + R
Sbjct: 174 DTRNGVLRIIGDPLVRYREDPVRMLRAVRLSAKLGIALDPVTAAPIAQLKSLLDNVPEAR 233
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
+L E+ ML G + ++ L K L LLP+ + + ++ N
Sbjct: 234 MLDEVLKMLLSGRSVECIQQLRKMELHHGLLPLLDVIM------EQPMGEKFIMLALKNT 287
Query: 231 DKLLAPDRPCHSSLWIAILAFHKALS 256
D+ L+ ++ + A L +H+ LS
Sbjct: 288 DERLSQEKSVSPAFLFACLLWHEVLS 313
>gi|452746540|ref|ZP_21946358.1| poly(A) polymerase [Pseudomonas stutzeri NF13]
gi|452009584|gb|EME01799.1| poly(A) polymerase [Pseudomonas stutzeri NF13]
Length = 464
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 41/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+D+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 67 LLQLNPKDYDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPEEDD 126
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP + I
Sbjct: 127 DDASHLASRNESGR-ILRDNVY------GTLEDDAQR------RDFTINALYYDPATERI 173
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
D+ G+ DIR V+ + +QED R+LRA+R AA+L F R +A + L+
Sbjct: 174 LDHTHGVHDIRNRLVRLIGDPEQRYQEDPVRMLRAVRFAAKLDFEIERHSAEPIVDLAEL 233
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+ + RL E+ + G AE + LL ++ L L P AA L ++ + L
Sbjct: 234 LDGIPSARLFDEVLKLFLGGKAERTFELLLEYDLFAPLFPASAAALERNP----EYAGTL 289
Query: 223 LLSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+ + +N D +A +P + LW A+ A L D+ P+
Sbjct: 290 IRNALANTDLRIAQGKPVTPAFLFAALLWPALPARVLELQDRGMPPI 336
>gi|431804494|ref|YP_007231397.1| poly(A) polymerase [Pseudomonas putida HB3267]
gi|430795259|gb|AGA75454.1| poly(A) polymerase [Pseudomonas putida HB3267]
Length = 462
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 131/287 (45%), Gaps = 42/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQ 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 GDSHRSSHNASGR-ILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 173
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 174 DYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTVQPIRELAPLL 233
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G +L L E L P + H R ++ L
Sbjct: 234 REIPPARLFEESLKLFLSGQGAIVFEMLVDLQLFEPLFPASS-----HALDERPTYTHTL 288
Query: 224 LS-LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+S +N D + +P + LW A+ A L +Q P+
Sbjct: 289 ISQALNNTDLRVKQGKPVTPAFLFAALLWPALPARVLHLQNQGVPPI 335
>gi|289667258|ref|ZP_06488333.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 455
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 139/298 (46%), Gaps = 27/298 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ TSA +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATSATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
A +QED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 186 GDAELRYQEDPVRMLRAVRLAAKLDFEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G +S L ++GL L P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVSSFEGLERYGLFGALFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL---AFHKALSD------QPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
+ A+L AF + L QP D A + ++ LE V + RR +
Sbjct: 303 SPAFLFALLLWPAFCRTLMGLQAQGVQPEDAQRRAADRVTLHQ----LERVALPRRFS 356
>gi|343518103|ref|ZP_08755098.1| polynucleotide adenylyltransferase [Haemophilus pittmaniae HK 85]
gi|343394088|gb|EGV06637.1| polynucleotide adenylyltransferase [Haemophilus pittmaniae HK 85]
Length = 434
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 116/213 (54%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A ++V ++F QC +VG+RF + HV F ++EV++F S S R
Sbjct: 31 LLGKTPKDFDVATNARPEQVQKIFQRQCRLVGRRFRLAHVLFGRDVIEVATFRASHSDAR 90
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ K + + D ++ +RDFT+N L ++P ++D+ GG+ED++ K+
Sbjct: 91 NANQAKQNEQGMLLRDNVYGTLEQDAERRDFTVNALYYNPQDNSLHDFFGGLEDLKAGKL 150
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 151 RLIGDPMVRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIRQLAPLLANIPAARLFDESLK 210
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G+ + +LL ++GL E L P Y +
Sbjct: 211 LLQTGNGVKTYQLLRQYGLFEPLFPALMPYFTE 243
>gi|386013899|ref|YP_005932176.1| PcnB [Pseudomonas putida BIRD-1]
gi|313500605|gb|ADR61971.1| PcnB [Pseudomonas putida BIRD-1]
Length = 460
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQ 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 GDTHRSSHNASGR-ILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 173
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 174 DYANGVHDVRNRLLRLIGDPTQRYQEDPVRMLRAVRFAAKLDFGIEKHTYLPIRGLAPML 233
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G + +L L E L P A H R ++ L
Sbjct: 234 REIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASA-----HALDERPTYTHTL 288
Query: 224 LS-LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+S +N D + +P + LW A+ A L +Q P+
Sbjct: 289 ISQALNNTDLRVKQGKPVTPAFLFAALLWPALPARVLHLQNQGVPPI 335
>gi|261867904|ref|YP_003255826.1| poly(A) polymerase [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413236|gb|ACX82607.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Aggregatibacter actinomycetemcomitans D11S-1]
Length = 592
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ VF QC +VG+RF + HV F I+EV++F +G
Sbjct: 38 LLGKKPKDFDVATNARPEQIQAVFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHMEH 96
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GI+D++ K
Sbjct: 97 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDYFNGIDDLKNGK 156
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 157 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESL 216
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L GS + RLL ++GL E L P+ Y + R ++L ++ D+ +A
Sbjct: 217 KLLQGGSGVKTYRLLRQYGLFEQLFPLLQNYFTE---REDSMAEKMILRALTSTDERVAD 273
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 274 KLPINPAFLFA 284
>gi|336125067|ref|YP_004567115.1| poly(A) polymerase [Vibrio anguillarum 775]
gi|365539974|ref|ZP_09365149.1| poly(A) polymerase [Vibrio ordalii ATCC 33509]
gi|335342790|gb|AEH34073.1| Poly(A) polymerase [Vibrio anguillarum 775]
Length = 463
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 113/212 (53%), Gaps = 13/212 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A +++ + F C ++G+RF + H+ F +VEV++F + S+
Sbjct: 73 LLGETPKDFDIATNATPEQIRQQFRNCRLIGRRFRLAHIMFGRDVVEVATFRGHHQEPSQ 132
Query: 61 DFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ + E + G ++D R RDFTIN + ++ I+DY GG++D+
Sbjct: 133 NVSAQSEAGMLLRDNVYGTIDEDAER------RDFTINAMYYNIGDYSIHDYAGGMDDLE 186
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LRAIR AA+L F ETA ++HL+P + + RL
Sbjct: 187 DKLIRLIGDPETRYREDPVRMLRAIRFAAKLDFDIEEETADPIEHLAPLLQDIPAARLYE 246
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQA 205
E ML G + L+ ++ L + L P+ A
Sbjct: 247 ESLKMLQTGHGLETYHLMREYNLFQQLFPVIA 278
>gi|387128121|ref|YP_006296726.1| Poly(A) polymerase [Methylophaga sp. JAM1]
gi|386275183|gb|AFI85081.1| Poly(A) polymerase [Methylophaga sp. JAM1]
Length = 457
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/258 (31%), Positives = 130/258 (50%), Gaps = 17/258 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF-ENTIVEVSSFST---SGR 56
+L PKDFDI T+A ++V R+F + +++G+RF + HV F + I+EV++F +
Sbjct: 73 LLGYEPKDFDISTNALPEQVHRLFRRSQLIGRRFKLVHVRFGRDEIIEVATFRAPPEAKN 132
Query: 57 RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ + + G E+D WR RDFTIN L ++ I DY GGI D++
Sbjct: 133 HVDKQGRIMQDNVYGTLEQD--AWR----RDFTINALYYNIRDFSIVDYTGGIADLQAGL 186
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + ++ED R+LRA+R A+LG + ET + L+P + + RL E
Sbjct: 187 IRLIGDKPVRYREDPVRMLRALRFMAKLGLKLEAETEQLIVDLAPLLSDIPPARLFDETL 246
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK--HGFRRRDKRSNLLLSLFSNLDKLL 234
+ G A + LL +G+ + L P AA L + +GF R LL+ N DK L
Sbjct: 247 KLYLSGQAAVTHELLCHYGVFDHLYPQTAALLHQENNGFPR-----TLLMKALENTDKRL 301
Query: 235 APDRPCHSSLWIAILAFH 252
A ++P + A L +
Sbjct: 302 ADNKPVTPAFLFAALLWE 319
>gi|319775006|ref|YP_004137494.1| poly polymerase [Haemophilus influenzae F3047]
gi|317449597|emb|CBY85802.1| probable poly polymerase [Haemophilus influenzae F3047]
Length = 452
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 180
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 181 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 240
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P ++Y +
Sbjct: 241 LLQAGRGVKTYRLLRQYGLFEQLFPALSSYFTE 273
>gi|329123092|ref|ZP_08251662.1| polyA polymerase family protein [Haemophilus aegyptius ATCC 11116]
gi|327471647|gb|EGF17089.1| polyA polymerase family protein [Haemophilus aegyptius ATCC 11116]
Length = 480
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 89 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 148
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 149 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 208
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 209 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 268
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P ++Y +
Sbjct: 269 LLQAGRGVKTYRLLRQYGLFEQLFPALSSYFTE 301
>gi|425113461|ref|ZP_18515316.1| poly(A) polymerase [Escherichia coli 8.0566]
gi|425118212|ref|ZP_18519966.1| poly(A) polymerase [Escherichia coli 8.0569]
gi|432659410|ref|ZP_19895075.1| Poly(A) polymerase [Escherichia coli KTE111]
gi|408574027|gb|EKK49829.1| poly(A) polymerase [Escherichia coli 8.0566]
gi|408574638|gb|EKK50404.1| poly(A) polymerase [Escherichia coli 8.0569]
gi|431204232|gb|ELF02805.1| Poly(A) polymerase [Escherichia coli KTE111]
Length = 454
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQHGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|420378493|ref|ZP_14877997.1| poly(A) polymerase [Shigella dysenteriae 225-75]
gi|391307434|gb|EIQ65167.1| poly(A) polymerase [Shigella dysenteriae 225-75]
Length = 454
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|398840875|ref|ZP_10598106.1| poly(A) polymerase [Pseudomonas sp. GM102]
gi|398109706|gb|EJL99626.1| poly(A) polymerase [Pseudomonas sp. GM102]
Length = 556
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 157 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 216
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 217 DEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 264
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 265 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSATPIRELAPLL 324
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P AA L
Sbjct: 325 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAAAL 369
>gi|398907815|ref|ZP_10654068.1| poly(A) polymerase [Pseudomonas sp. GM50]
gi|398170958|gb|EJM58876.1| poly(A) polymerase [Pseudomonas sp. GM50]
Length = 546
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 147 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 206
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 207 DEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 254
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 255 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSATPIRELAPLL 314
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P AA L
Sbjct: 315 REIPSARLFEEVLKLFLSGYAADTFEMLVDLQLFDPLFPASAAAL 359
>gi|333998651|ref|YP_004531263.1| polyA polymerase family protein [Treponema primitia ZAS-2]
gi|333738524|gb|AEF84014.1| polyA polymerase family protein [Treponema primitia ZAS-2]
Length = 407
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 112/209 (53%), Gaps = 27/209 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
ML + PKDFDI++ A + ++F ++G+RF + HV+F I EV +F R +
Sbjct: 61 MLGKKPKDFDIVSDATPSRIKKIFRNARVIGRRFRLVHVYFGPKIFEVCTF-----RSLK 115
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D G E+D +R RDF++N L +DP +++ DY+GG++DIR+ +++ +
Sbjct: 116 DGPTS--NTYGTIEEDVLR------RDFSLNALFYDPGKQVVVDYVGGMKDIREKRIRPI 167
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFS-------RETAHFVKHLSPSILKLDRGRLLM 173
IP S F++D R++RA++ AA GF+ ++ AH + +SPS RL
Sbjct: 168 IPLSFIFKDDPVRMIRAVKYAATTGFKLPLTLRWTIKKQAHLLAPISPS-------RLTE 220
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
E+ +L SA L FGL E L P
Sbjct: 221 EIFKILHSPSAAVITESLESFGLYEYLQP 249
>gi|152979389|ref|YP_001345018.1| poly(A) polymerase [Actinobacillus succinogenes 130Z]
gi|150841112|gb|ABR75083.1| poly(A) polymerase [Actinobacillus succinogenes 130Z]
Length = 421
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 116/219 (52%), Gaps = 15/219 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF-------- 51
+L + PKDFD+ T+A +++ VF QC +VG+RF + HV F ++EV++F
Sbjct: 31 LLGKKPKDFDVATNARPEQIQTVFQRQCRLVGRRFRLAHVMFGRDVIEVATFRAHHAESK 90
Query: 52 STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ + R + D + G E+D R RDFT+N L ++P I+DY GIED
Sbjct: 91 NENQARRNEDGMLLRDNVYGTLEQDAER------RDFTVNALYYNPKDNTIHDYYHGIED 144
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + +T +QED R+LR+IR A+L + + ++ L+P + + RL
Sbjct: 145 LKAGKLRLIGDPATRYQEDPVRMLRSIRFMAKLDMFLDKPSEEPIRKLAPLLKNIPPARL 204
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G+ + RL+ ++GL + L P Y +
Sbjct: 205 FDESLKLLQAGAGLKTYRLMCEYGLFDQLFPALMPYFTE 243
>gi|148825656|ref|YP_001290409.1| poly polymerase [Haemophilus influenzae PittEE]
gi|148715816|gb|ABQ98026.1| probable poly polymerase [Haemophilus influenzae PittEE]
Length = 514
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 15/219 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 123 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 182
Query: 58 FSRDFKYEFERPI------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
K E + G E+D +R RDFT+N L ++P + DY GI+D
Sbjct: 183 NENQAKQSNEGMLLRDNVYGTIEQDAVR------RDFTVNALYYNPQDNTLRDYFEGIKD 236
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + T +QED R+LR+IR A+L + + + L+P + + RL
Sbjct: 237 LKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPISELAPLLKNIPPARL 296
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + RLL ++GL E L P + Y +
Sbjct: 297 FDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSPYFTE 335
>gi|261338862|ref|ZP_05966720.1| hypothetical protein ENTCAN_05058 [Enterobacter cancerogenus ATCC
35316]
gi|288318685|gb|EFC57623.1| polyA polymerase [Enterobacter cancerogenus ATCC 35316]
Length = 447
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 115/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F S +
Sbjct: 55 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEASAA 114
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 115 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 168
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ I + RL
Sbjct: 169 LKDGLIRLIGTPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLINDVPPARL 228
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + LL ++ L + L P Y ++G
Sbjct: 229 FEEALKLLQAGYGFETYNLLREYSLFQPLFPTITRYFTENG 269
>gi|421497615|ref|ZP_15944774.1| poly polymerase [Aeromonas media WS]
gi|407183398|gb|EKE57296.1| poly polymerase [Aeromonas media WS]
Length = 449
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 114/215 (53%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T A +++ +FS C ++G+RF + H+ F ++EV++F + +
Sbjct: 42 LLGKTPKDFDIATDATPEQIKALFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNT 101
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N L + ++D+ GGIED+ + K+
Sbjct: 102 SKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGIEDLAERKL 161
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S TA ++ L+P + + RL E
Sbjct: 162 ELIGDPETRYREDPVRMLRAVRFAAKLEMTISPRTAAPIRELAPLLQDIPAARLFEETLK 221
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ G A+ +LL ++GL + L P AA +G
Sbjct: 222 LFLAGDGLATYKLLREYGLFQPLFPQVAALFTPNG 256
>gi|392405161|ref|YP_006441773.1| poly(A) polymerase [Turneriella parva DSM 21527]
gi|390613115|gb|AFM14267.1| poly(A) polymerase [Turneriella parva DSM 21527]
Length = 500
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 106/208 (50%), Gaps = 12/208 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFEN-TIVEVSSFST-----S 54
+L R PKD+DI+T A +E+ R+F+ I+G+RF + HV F+ I+EVS+ + S
Sbjct: 70 LLGRKPKDYDIVTDAHPQELRRMFTNSRIIGRRFRLVHVVFKGGKIIEVSTARSLPTNRS 129
Query: 55 GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ D + + G ++D R RDFTIN L+FD + I DY GG EDI++
Sbjct: 130 SAKNEDDLYLKRDNQFGTFKEDAAR------RDFTINALIFDVKNQTIVDYAGGFEDIQQ 183
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
V+ + SF ED R+ RA++ AA LG T + P +LK RL E
Sbjct: 184 RVVRVIGNPEISFPEDPVRMYRAVKFAALLGLSLDPATLKAINKYKPLLLKASSSRLHEE 243
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLP 202
N + G A L GL+E L+P
Sbjct: 244 YNKIFRSGQAATIFGALLSTGLMETLMP 271
>gi|444346612|ref|ZP_21154576.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|443541430|gb|ELT51857.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 432
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ VF QC +VG+RF + HV F I+EV++F +G
Sbjct: 38 LLGKKPKDFDVATNARPEQIQAVFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHMEH 96
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GI+D++ K
Sbjct: 97 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLRDYFNGIDDLKNGK 156
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 157 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESL 216
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L GS + RLL ++GL E L P+ Y + R ++L ++ D+ +A
Sbjct: 217 KLLQGGSGVKTYRLLRQYGLFEQLFPLLQNYFTE---REDSMAEKMILRALTSTDERVAD 273
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 274 KLPINPAFLFA 284
>gi|334705809|ref|ZP_08521675.1| poly(A) polymerase [Aeromonas caviae Ae398]
Length = 472
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 113/215 (52%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T A +++ +FS C ++G+RF + H+ F ++EV++F + +
Sbjct: 67 LLGKTPKDFDIATDATPEQIKALFSNCRLIGRRFRLAHIVFGRDVIEVATFRGHHHQVNT 126
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N L + ++D+ GG+ED+ ++
Sbjct: 127 SKHVSAQSDEGMLLRDNVYGTIEEDAERRDFTVNALYYSAKDFTLHDFEGGLEDLAARRL 186
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S TA ++ L+P + + RL E
Sbjct: 187 ELIGDPETRYREDPVRMLRAVRFAAKLDMTISPRTAAPIRELAPLLQDIPAARLFEETLK 246
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+ G A+ +LL ++GL + L P AA HG
Sbjct: 247 LFLAGDGLATYKLLREYGLFQPLFPQVAALFTPHG 281
>gi|386607235|ref|YP_006113535.1| poly(A) polymerase I [Escherichia coli UM146]
gi|432572038|ref|ZP_19808532.1| Poly(A) polymerase [Escherichia coli KTE55]
gi|307629719|gb|ADN74023.1| poly(A) polymerase I [Escherichia coli UM146]
gi|431111765|gb|ELE15656.1| Poly(A) polymerase [Escherichia coli KTE55]
Length = 454
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|222154971|ref|YP_002555110.1| Poly(A) polymerase [Escherichia coli LF82]
gi|222031976|emb|CAP74714.1| Poly(A) polymerase [Escherichia coli LF82]
Length = 454
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|410084962|ref|ZP_11281683.1| Poly(A) polymerase [Morganella morganii SC01]
gi|421492524|ref|ZP_15939884.1| PCNB [Morganella morganii subsp. morganii KT]
gi|455738281|ref|YP_007504547.1| Poly(A) polymerase [Morganella morganii subsp. morganii KT]
gi|400193131|gb|EJO26267.1| PCNB [Morganella morganii subsp. morganii KT]
gi|409768607|gb|EKN52667.1| Poly(A) polymerase [Morganella morganii SC01]
gi|455419844|gb|AGG30174.1| Poly(A) polymerase [Morganella morganii subsp. morganii KT]
Length = 451
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 151/317 (47%), Gaps = 32/317 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L R PKDFDI T+A EV ++F C +VG+RF + H+ F I+EV++F
Sbjct: 53 LLERKPKDFDIATNATPDEVRKLFRNCRLVGRRFRLAHIMFGPDIIEVATFRGPHDNNEP 112
Query: 52 STSGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
+ G+ S+ K + G E+D +R RDFTIN L + + DY+GG
Sbjct: 113 ADDGKARSQQGKNGMLLRDNIFGTIEEDAVR------RDFTINSLYYSVADFTVRDYVGG 166
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D+++ ++ + T ++ED R+LRAIR AA+L ETA ++ LS + +
Sbjct: 167 LADLQQRIIRLIGDPETRYREDPVRMLRAIRFAAKLDMTIEPETAAPIRTLSTLLRDIPP 226
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E+ +L G + LL ++ LL++L P+ A L ++ S ++ +
Sbjct: 227 ARLFEEVLKLLQAGDGHRTFELLREYDLLDMLFPLVAGPLKENP---DTPLSRIVDQVLK 283
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRI 288
N D + D+ + + A++ ++ PL L +G EA IA I
Sbjct: 284 NTDYRIHNDQRVNPAFLFAVMLWY---------PLCEHAEKLTQESGLAYYEAFAIA--I 332
Query: 289 NKSHDESFCELLEPRDL 305
N DE + P+ L
Sbjct: 333 NDILDEQCRAIAIPKRL 349
>gi|322812375|pdb|3AQM|A Chain A, Structure Of Bacterial Protein (Form Ii)
gi|322812376|pdb|3AQM|B Chain B, Structure Of Bacterial Protein (Form Ii)
Length = 415
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 46 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 105
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 106 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 159
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 160 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 219
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 220 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 260
>gi|416284575|ref|ZP_11647325.1| Poly(A) polymerase [Shigella boydii ATCC 9905]
gi|425420742|ref|ZP_18801986.1| poly(A) polymerase I [Escherichia coli 0.1288]
gi|320179882|gb|EFW54826.1| Poly(A) polymerase [Shigella boydii ATCC 9905]
gi|408348542|gb|EKJ62638.1| poly(A) polymerase I [Escherichia coli 0.1288]
Length = 435
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 43 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 102
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 103 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 156
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 157 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 216
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 217 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 257
>gi|415859811|ref|ZP_11533924.1| poly(A) polymerase family protein [Shigella flexneri 2a str. 2457T]
gi|313646476|gb|EFS10937.1| poly(A) polymerase family protein [Shigella flexneri 2a str. 2457T]
Length = 437
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 45 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 159 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 259
>gi|309787190|ref|ZP_07681802.1| poly(A) polymerase family protein [Shigella dysenteriae 1617]
gi|81239683|gb|ABB60393.1| poly(A) polymerase I [Shigella dysenteriae Sd197]
gi|308924768|gb|EFP70263.1| poly(A) polymerase family protein [Shigella dysenteriae 1617]
Length = 454
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|452970011|ref|ZP_21968238.1| poly(A) polymerase I [Escherichia coli O157:H7 str. EC4009]
Length = 437
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 45 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 159 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 259
>gi|162135892|ref|NP_414685.4| poly(A) polymerase I [Escherichia coli str. K-12 substr. MG1655]
gi|170079780|ref|YP_001729100.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. DH10B]
gi|238899542|ref|YP_002925338.1| poly(A) polymerase I [Escherichia coli BW2952]
gi|254791278|ref|YP_003076115.1| poly(A) polymerase I [Escherichia coli O157:H7 str. TW14359]
gi|378714517|ref|YP_005279410.1| poly(A) polymerase [Escherichia coli KO11FL]
gi|388476262|ref|YP_488446.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. W3110]
gi|115311610|sp|P0ABF3.2|PCNB_ECO57 RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein; Flags: Precursor
gi|115311611|sp|P0ABF2.2|PCNB_ECOL6 RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein; Flags: Precursor
gi|115311612|sp|P0ABF1.2|PCNB_ECOLI RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein; Flags: Precursor
gi|85674351|dbj|BAB96720.2| poly(A) polymerase I [Escherichia coli str. K12 substr. W3110]
gi|87081691|gb|AAC73254.2| poly(A) polymerase [Escherichia coli str. K-12 substr. MG1655]
gi|169887615|gb|ACB01322.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. DH10B]
gi|238862072|gb|ACR64070.1| poly(A) polymerase I [Escherichia coli BW2952]
gi|254590678|gb|ACT70039.1| poly(A) polymerase I [Escherichia coli O157:H7 str. TW14359]
gi|323380078|gb|ADX52346.1| poly(A) polymerase [Escherichia coli KO11FL]
gi|359331006|dbj|BAL37453.1| poly(A) polymerase I [Escherichia coli str. K-12 substr. MDS42]
Length = 465
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 73 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 132
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 133 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 186
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 187 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 246
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 247 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 287
>gi|416895490|ref|ZP_11925391.1| poly(A) polymerase family protein [Escherichia coli STEC_7v]
gi|417112165|ref|ZP_11964288.1| polynucleotide adenylyltransferase [Escherichia coli 1.2741]
gi|422802541|ref|ZP_16851034.1| poly(A) polymerase [Escherichia coli M863]
gi|323964964|gb|EGB60430.1| poly(A) polymerase [Escherichia coli M863]
gi|327255121|gb|EGE66724.1| poly(A) polymerase family protein [Escherichia coli STEC_7v]
gi|386142949|gb|EIG84085.1| polynucleotide adenylyltransferase [Escherichia coli 1.2741]
Length = 454
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|387605620|ref|YP_006094476.1| poly(A) polymerase [Escherichia coli 042]
gi|284919920|emb|CBG32975.1| poly(A) polymerase [Escherichia coli 042]
Length = 465
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 73 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 132
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 133 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 186
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 187 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 246
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 247 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 287
>gi|74318068|ref|YP_315808.1| poly(A) polymerase [Thiobacillus denitrificans ATCC 25259]
gi|74057563|gb|AAZ98003.1| poly(A) polymerase, PcnB [Thiobacillus denitrificans ATCC 25259]
Length = 462
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 149/325 (45%), Gaps = 34/325 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T A +EV R+F + I+G+RF I HV +EV++F +G++ +
Sbjct: 65 LLGGTPKDFDVATDATPEEVRRLFRRSRIIGRRFQIVHVMCGRETIEVTTFRANGQKEAE 124
Query: 61 DFK-YEFERPIG----CDEKDFIRWRNCL--------QRDFTINGLMFDPYAKIIYDYIG 107
D + + P DE + N +RDFTIN L +DP + ++DY G
Sbjct: 125 DEDAHGDDAPAASRRLTDEHGRLLSDNVFGSMADDAARRDFTINALYYDPAREEVHDYFG 184
Query: 108 GIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLD 167
G+ D +K ++ + T ++ED R+LRA R AA+L F ET V L+P + +
Sbjct: 185 GVGDCKKRVLRMIGDPETRYREDPVRMLRAARFAAKLDFHIDPETRKPVATLAPLLANIP 244
Query: 168 RGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF 227
R R+ E +L G A + L GL +LP+ L R + +
Sbjct: 245 RARIFDEALKLLLSGHALRGVHQLRAEGLHHGMLPLLDTILDDTTGER------FITAAL 298
Query: 228 SNLDKLLAPDRPCHSS------LWIAILAFHKAL---SDQPRDPLVVAVFSLAVYNGGDM 278
+ D + DRP + LW ++ KAL ++P+ L VA+ + G +
Sbjct: 299 KSTDARIQSDRPSSPAFLFGTLLWPQVVKRWKALEAAGEKPQPALFVAMDEVLDAQRGQL 358
Query: 279 LEAVKIARRINKSHDESFCELLEPR 303
I RR + E + L+PR
Sbjct: 359 ----AIPRRYDGMMKEIWA--LQPR 377
>gi|293408235|ref|ZP_06652075.1| pcnB [Escherichia coli B354]
gi|301026010|ref|ZP_07189491.1| polynucleotide adenylyltransferase [Escherichia coli MS 69-1]
gi|331671653|ref|ZP_08372451.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA280]
gi|417143002|ref|ZP_11985383.1| polynucleotide adenylyltransferase [Escherichia coli 97.0259]
gi|417306672|ref|ZP_12093560.1| Poly(A) polymerase [Escherichia coli PCN033]
gi|419918966|ref|ZP_14437138.1| poly(A) polymerase I [Escherichia coli KD2]
gi|422333305|ref|ZP_16414316.1| Poly(A) polymerase [Escherichia coli 4_1_47FAA]
gi|422971453|ref|ZP_16974728.1| Poly(A) polymerase [Escherichia coli TA124]
gi|432546461|ref|ZP_19783273.1| Poly(A) polymerase [Escherichia coli KTE236]
gi|432546866|ref|ZP_19783666.1| Poly(A) polymerase [Escherichia coli KTE237]
gi|432600654|ref|ZP_19836910.1| Poly(A) polymerase [Escherichia coli KTE66]
gi|432625110|ref|ZP_19861109.1| Poly(A) polymerase [Escherichia coli KTE76]
gi|432791370|ref|ZP_20025467.1| Poly(A) polymerase [Escherichia coli KTE78]
gi|432797340|ref|ZP_20031369.1| Poly(A) polymerase [Escherichia coli KTE79]
gi|432818364|ref|ZP_20052091.1| Poly(A) polymerase [Escherichia coli KTE115]
gi|432856953|ref|ZP_20084204.1| Poly(A) polymerase [Escherichia coli KTE144]
gi|432872687|ref|ZP_20092503.1| Poly(A) polymerase [Escherichia coli KTE147]
gi|291472486|gb|EFF14968.1| pcnB [Escherichia coli B354]
gi|300395720|gb|EFJ79258.1| polynucleotide adenylyltransferase [Escherichia coli MS 69-1]
gi|331071498|gb|EGI42855.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA280]
gi|338771717|gb|EGP26449.1| Poly(A) polymerase [Escherichia coli PCN033]
gi|371598802|gb|EHN87597.1| Poly(A) polymerase [Escherichia coli TA124]
gi|373245820|gb|EHP65285.1| Poly(A) polymerase [Escherichia coli 4_1_47FAA]
gi|386155027|gb|EIH11385.1| polynucleotide adenylyltransferase [Escherichia coli 97.0259]
gi|388389037|gb|EIL50580.1| poly(A) polymerase I [Escherichia coli KD2]
gi|431068243|gb|ELD76748.1| Poly(A) polymerase [Escherichia coli KTE236]
gi|431086678|gb|ELD92700.1| Poly(A) polymerase [Escherichia coli KTE237]
gi|431144693|gb|ELE46387.1| Poly(A) polymerase [Escherichia coli KTE66]
gi|431153176|gb|ELE54095.1| Poly(A) polymerase [Escherichia coli KTE76]
gi|431343038|gb|ELG30008.1| Poly(A) polymerase [Escherichia coli KTE78]
gi|431346554|gb|ELG33459.1| Poly(A) polymerase [Escherichia coli KTE79]
gi|431359353|gb|ELG45998.1| Poly(A) polymerase [Escherichia coli KTE115]
gi|431395461|gb|ELG78973.1| Poly(A) polymerase [Escherichia coli KTE144]
gi|431406032|gb|ELG89264.1| Poly(A) polymerase [Escherichia coli KTE147]
Length = 454
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|117622430|ref|YP_851343.1| poly(A) polymerase I [Escherichia coli APEC O1]
gi|168751363|ref|ZP_02776385.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4113]
gi|168755755|ref|ZP_02780762.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4401]
gi|168764713|ref|ZP_02789720.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4501]
gi|168770386|ref|ZP_02795393.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4486]
gi|168782034|ref|ZP_02807041.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4076]
gi|168789251|ref|ZP_02814258.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC869]
gi|168801481|ref|ZP_02826488.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC508]
gi|170680324|ref|YP_001742271.1| poly(A) polymerase I [Escherichia coli SMS-3-5]
gi|187731223|ref|YP_001878946.1| poly(A) polymerase I [Shigella boydii CDC 3083-94]
gi|188493474|ref|ZP_03000744.1| poly(A) polymerase [Escherichia coli 53638]
gi|191166336|ref|ZP_03028168.1| poly(A) polymerase [Escherichia coli B7A]
gi|191172771|ref|ZP_03034308.1| poly(A) polymerase [Escherichia coli F11]
gi|193063166|ref|ZP_03044257.1| poly(A) polymerase [Escherichia coli E22]
gi|194428279|ref|ZP_03060821.1| poly(A) polymerase [Escherichia coli B171]
gi|194433394|ref|ZP_03065673.1| poly(A) polymerase [Shigella dysenteriae 1012]
gi|195938175|ref|ZP_03083557.1| poly(A) polymerase I [Escherichia coli O157:H7 str. EC4024]
gi|208807142|ref|ZP_03249479.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4206]
gi|208814587|ref|ZP_03255916.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4045]
gi|208821338|ref|ZP_03261658.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4042]
gi|209398537|ref|YP_002268752.1| poly(A) polymerase I [Escherichia coli O157:H7 str. EC4115]
gi|215485303|ref|YP_002327734.1| poly(A) polymerase [Escherichia coli O127:H6 str. E2348/69]
gi|217326217|ref|ZP_03442301.1| poly(A) polymerase [Escherichia coli O157:H7 str. TW14588]
gi|227884943|ref|ZP_04002748.1| polynucleotide adenylyltransferase [Escherichia coli 83972]
gi|260842377|ref|YP_003220155.1| poly(A) polymerase I [Escherichia coli O103:H2 str. 12009]
gi|261226898|ref|ZP_05941179.1| poly(A) polymerase I [Escherichia coli O157:H7 str. FRIK2000]
gi|261255302|ref|ZP_05947835.1| poly(A) polymerase I [Escherichia coli O157:H7 str. FRIK966]
gi|300816181|ref|ZP_07096404.1| polynucleotide adenylyltransferase [Escherichia coli MS 107-1]
gi|300938547|ref|ZP_07153283.1| polynucleotide adenylyltransferase [Escherichia coli MS 21-1]
gi|300949830|ref|ZP_07163800.1| polynucleotide adenylyltransferase [Escherichia coli MS 116-1]
gi|300956012|ref|ZP_07168342.1| polynucleotide adenylyltransferase [Escherichia coli MS 175-1]
gi|300984714|ref|ZP_07177077.1| polynucleotide adenylyltransferase [Escherichia coli MS 200-1]
gi|300993664|ref|ZP_07180491.1| polynucleotide adenylyltransferase [Escherichia coli MS 45-1]
gi|301028631|ref|ZP_07191857.1| polynucleotide adenylyltransferase [Escherichia coli MS 196-1]
gi|301049947|ref|ZP_07196868.1| polynucleotide adenylyltransferase [Escherichia coli MS 185-1]
gi|301646461|ref|ZP_07246340.1| polynucleotide adenylyltransferase [Escherichia coli MS 146-1]
gi|307311408|ref|ZP_07591050.1| poly(A) polymerase [Escherichia coli W]
gi|309796317|ref|ZP_07690726.1| polynucleotide adenylyltransferase [Escherichia coli MS 145-7]
gi|312966274|ref|ZP_07780500.1| poly(A) polymerase family protein [Escherichia coli 2362-75]
gi|331640597|ref|ZP_08341745.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H736]
gi|331651047|ref|ZP_08352075.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M718]
gi|331661215|ref|ZP_08362147.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA206]
gi|331681528|ref|ZP_08382165.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H299]
gi|386279188|ref|ZP_10056876.1| Poly(A) polymerase [Escherichia sp. 4_1_40B]
gi|386596963|ref|YP_006093363.1| poly(A) polymerase [Escherichia coli DH1]
gi|386597894|ref|YP_006099400.1| poly(A) polymerase [Escherichia coli IHE3034]
gi|386607446|ref|YP_006122932.1| poly(A) polymerase I [Escherichia coli W]
gi|386622556|ref|YP_006142284.1| poly(A) polymerase I [Escherichia coli O7:K1 str. CE10]
gi|386698642|ref|YP_006162479.1| poly(A) polymerase I [Escherichia coli KO11FL]
gi|386707872|ref|YP_006171593.1| poly(A) polymerase I [Escherichia coli W]
gi|387619911|ref|YP_006127538.1| poly(A) polymerase I [Escherichia coli DH1]
gi|404373455|ref|ZP_10978718.1| Poly(A) polymerase [Escherichia sp. 1_1_43]
gi|414574330|ref|ZP_11431545.1| poly(A) polymerase [Shigella sonnei 3233-85]
gi|415777499|ref|ZP_11488728.1| poly(A) polymerase family protein [Escherichia coli 3431]
gi|415801971|ref|ZP_11499848.1| poly(A) polymerase family protein [Escherichia coli E128010]
gi|415832478|ref|ZP_11517931.1| poly(A) polymerase family protein [Escherichia coli OK1357]
gi|415837536|ref|ZP_11519610.1| poly(A) polymerase family protein [Escherichia coli RN587/1]
gi|415849910|ref|ZP_11526981.1| poly(A) polymerase family protein [Shigella sonnei 53G]
gi|415880181|ref|ZP_11545048.1| polyA polymerase [Escherichia coli MS 79-10]
gi|416259075|ref|ZP_11639871.1| Poly(A) polymerase [Shigella dysenteriae CDC 74-1112]
gi|416294297|ref|ZP_11650782.1| Poly(A) polymerase [Shigella flexneri CDC 796-83]
gi|416314073|ref|ZP_11658531.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1044]
gi|416318976|ref|ZP_11661528.1| Poly(A) polymerase [Escherichia coli O157:H7 str. EC1212]
gi|416325865|ref|ZP_11666189.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1125]
gi|416777794|ref|ZP_11875434.1| poly(A) polymerase I [Escherichia coli O157:H7 str. G5101]
gi|416785027|ref|ZP_11878503.1| poly(A) polymerase I [Escherichia coli O157:H- str. 493-89]
gi|416795799|ref|ZP_11883341.1| poly(A) polymerase I [Escherichia coli O157:H- str. H 2687]
gi|416807828|ref|ZP_11888167.1| poly(A) polymerase I [Escherichia coli O55:H7 str. 3256-97]
gi|416818977|ref|ZP_11893047.1| poly(A) polymerase I [Escherichia coli O55:H7 str. USDA 5905]
gi|416828313|ref|ZP_11897912.1| poly(A) polymerase I [Escherichia coli O157:H7 str. LSU-61]
gi|417082450|ref|ZP_11950784.1| poly(A) polymerase I [Escherichia coli cloneA_i1]
gi|417151671|ref|ZP_11991198.1| polynucleotide adenylyltransferase [Escherichia coli 1.2264]
gi|417175538|ref|ZP_12005334.1| polynucleotide adenylyltransferase [Escherichia coli 3.2608]
gi|417182061|ref|ZP_12008897.1| polynucleotide adenylyltransferase [Escherichia coli 93.0624]
gi|417224553|ref|ZP_12027844.1| polynucleotide adenylyltransferase [Escherichia coli 96.154]
gi|417230158|ref|ZP_12031744.1| polynucleotide adenylyltransferase [Escherichia coli 5.0959]
gi|417252509|ref|ZP_12044268.1| polynucleotide adenylyltransferase [Escherichia coli 4.0967]
gi|417263483|ref|ZP_12050892.1| polynucleotide adenylyltransferase [Escherichia coli 2.3916]
gi|417273492|ref|ZP_12060837.1| polynucleotide adenylyltransferase [Escherichia coli 2.4168]
gi|417277877|ref|ZP_12065197.1| polynucleotide adenylyltransferase [Escherichia coli 3.2303]
gi|417284573|ref|ZP_12071868.1| polynucleotide adenylyltransferase [Escherichia coli 3003]
gi|417288086|ref|ZP_12075372.1| polynucleotide adenylyltransferase [Escherichia coli TW07793]
gi|417294232|ref|ZP_12081511.1| polynucleotide adenylyltransferase [Escherichia coli B41]
gi|417594991|ref|ZP_12245667.1| poly(A) polymerase family protein [Escherichia coli 3030-1]
gi|417600405|ref|ZP_12250993.1| poly(A) polymerase family protein [Escherichia coli STEC_94C]
gi|417606069|ref|ZP_12256603.1| poly(A) polymerase family protein [Escherichia coli STEC_DG131-3]
gi|417611153|ref|ZP_12261629.1| poly(A) polymerase family protein [Escherichia coli STEC_EH250]
gi|417616478|ref|ZP_12266918.1| poly(A) polymerase family protein [Escherichia coli G58-1]
gi|417621372|ref|ZP_12271703.1| poly(A) polymerase family protein [Escherichia coli STEC_H.1.8]
gi|417632064|ref|ZP_12282290.1| poly(A) polymerase family protein [Escherichia coli STEC_MHI813]
gi|417632620|ref|ZP_12282844.1| poly(A) polymerase family protein [Escherichia coli STEC_S1191]
gi|417670295|ref|ZP_12319824.1| poly(A) polymerase family protein [Escherichia coli STEC_O31]
gi|417670547|ref|ZP_12320049.1| poly(A) polymerase family protein [Shigella dysenteriae 155-74]
gi|417680324|ref|ZP_12329714.1| poly(A) polymerase family protein [Shigella boydii 3594-74]
gi|417687916|ref|ZP_12337168.1| poly(A) polymerase family protein [Shigella boydii 5216-82]
gi|417753963|ref|ZP_12402060.1| poly(A) polymerase I [Escherichia coli DEC2B]
gi|418261569|ref|ZP_12883563.1| poly(A) polymerase I [Shigella sonnei str. Moseley]
gi|418301030|ref|ZP_12912824.1| poly(A) polymerase family protein [Escherichia coli UMNF18]
gi|418959591|ref|ZP_13511489.1| poly(A) polymerase I [Escherichia coli J53]
gi|418995168|ref|ZP_13542788.1| poly(A) polymerase I [Escherichia coli DEC1A]
gi|419000303|ref|ZP_13547870.1| poly(A) polymerase I [Escherichia coli DEC1B]
gi|419005861|ref|ZP_13553319.1| poly(A) polymerase I [Escherichia coli DEC1C]
gi|419011696|ref|ZP_13559066.1| poly(A) polymerase [Escherichia coli DEC1D]
gi|419016633|ref|ZP_13563961.1| poly(A) polymerase I [Escherichia coli DEC1E]
gi|419022224|ref|ZP_13569473.1| poly(A) polymerase [Escherichia coli DEC2A]
gi|419027117|ref|ZP_13574321.1| poly(A) polymerase I [Escherichia coli DEC2C]
gi|419032792|ref|ZP_13579893.1| poly(A) polymerase I [Escherichia coli DEC2D]
gi|419037899|ref|ZP_13584962.1| poly(A) polymerase I [Escherichia coli DEC2E]
gi|419048421|ref|ZP_13595346.1| poly(A) polymerase I [Escherichia coli DEC3A]
gi|419054428|ref|ZP_13601291.1| poly(A) polymerase I [Escherichia coli DEC3B]
gi|419054793|ref|ZP_13601654.1| poly(A) polymerase I [Escherichia coli DEC3C]
gi|419060349|ref|ZP_13607137.1| poly(A) polymerase I [Escherichia coli DEC3D]
gi|419066180|ref|ZP_13612871.1| poly(A) polymerase I [Escherichia coli DEC3E]
gi|419073109|ref|ZP_13618685.1| poly(A) polymerase I [Escherichia coli DEC3F]
gi|419083900|ref|ZP_13629337.1| poly(A) polymerase I [Escherichia coli DEC4A]
gi|419089908|ref|ZP_13635252.1| poly(A) polymerase I [Escherichia coli DEC4B]
gi|419095368|ref|ZP_13640637.1| poly(A) polymerase I [Escherichia coli DEC4C]
gi|419101345|ref|ZP_13646526.1| poly(A) polymerase I [Escherichia coli DEC4D]
gi|419107188|ref|ZP_13652301.1| poly(A) polymerase I [Escherichia coli DEC4E]
gi|419112632|ref|ZP_13657677.1| poly(A) polymerase I [Escherichia coli DEC4F]
gi|419112965|ref|ZP_13658001.1| poly(A) polymerase I [Escherichia coli DEC5A]
gi|419118471|ref|ZP_13663459.1| poly(A) polymerase I [Escherichia coli DEC5B]
gi|419123970|ref|ZP_13668880.1| poly(A) polymerase I [Escherichia coli DEC5C]
gi|419129706|ref|ZP_13674565.1| poly(A) polymerase I [Escherichia coli DEC5D]
gi|419140107|ref|ZP_13684891.1| poly(A) polymerase [Escherichia coli DEC5E]
gi|419140510|ref|ZP_13685270.1| poly(A) polymerase [Escherichia coli DEC6A]
gi|419146022|ref|ZP_13690720.1| poly(A) polymerase I [Escherichia coli DEC6B]
gi|419151982|ref|ZP_13696575.1| poly(A) polymerase [Escherichia coli DEC6C]
gi|419157397|ref|ZP_13701929.1| poly(A) polymerase [Escherichia coli DEC6D]
gi|419162405|ref|ZP_13706886.1| poly(A) polymerase I [Escherichia coli DEC6E]
gi|419276245|ref|ZP_13818518.1| poly(A) polymerase I [Escherichia coli DEC10E]
gi|419292813|ref|ZP_13834891.1| poly(A) polymerase I [Escherichia coli DEC11A]
gi|419298132|ref|ZP_13840160.1| poly(A) polymerase I [Escherichia coli DEC11B]
gi|419298331|ref|ZP_13840357.1| poly(A) polymerase [Escherichia coli DEC11C]
gi|419309683|ref|ZP_13851563.1| poly(A) polymerase [Escherichia coli DEC11E]
gi|419314987|ref|ZP_13856820.1| poly(A) polymerase [Escherichia coli DEC12A]
gi|419320782|ref|ZP_13862528.1| poly(A) polymerase I [Escherichia coli DEC12B]
gi|419326985|ref|ZP_13868623.1| poly(A) polymerase [Escherichia coli DEC12C]
gi|419332402|ref|ZP_13873970.1| poly(A) polymerase I [Escherichia coli DEC12D]
gi|419338153|ref|ZP_13879645.1| poly(A) polymerase I [Escherichia coli DEC12E]
gi|419368421|ref|ZP_13909555.1| poly(A) polymerase [Escherichia coli DEC14A]
gi|419373578|ref|ZP_13914640.1| poly(A) polymerase I [Escherichia coli DEC14B]
gi|419379003|ref|ZP_13919987.1| poly(A) polymerase I [Escherichia coli DEC14C]
gi|419384261|ref|ZP_13925170.1| poly(A) polymerase I [Escherichia coli DEC14D]
gi|419806896|ref|ZP_14331983.1| poly(A) polymerase I [Escherichia coli AI27]
gi|419912681|ref|ZP_14431129.1| poly(A) polymerase I [Escherichia coli KD1]
gi|419921821|ref|ZP_14439856.1| poly(A) polymerase I [Escherichia coli 541-15]
gi|419929395|ref|ZP_14447069.1| poly(A) polymerase I [Escherichia coli 541-1]
gi|419937884|ref|ZP_14454729.1| poly(A) polymerase I [Escherichia coli 75]
gi|419942421|ref|ZP_14459024.1| poly(A) polymerase I [Escherichia coli HM605]
gi|419951461|ref|ZP_14467654.1| poly(A) polymerase I [Escherichia coli CUMT8]
gi|420267404|ref|ZP_14769815.1| poly(A) polymerase I [Escherichia coli PA22]
gi|420273115|ref|ZP_14775450.1| poly(A) polymerase I [Escherichia coli PA40]
gi|420283593|ref|ZP_14785818.1| poly(A) polymerase I [Escherichia coli TW06591]
gi|420284644|ref|ZP_14786864.1| poly(A) polymerase I [Escherichia coli TW10246]
gi|420290165|ref|ZP_14792334.1| poly(A) polymerase I [Escherichia coli TW11039]
gi|420295887|ref|ZP_14797985.1| poly(A) polymerase I [Escherichia coli TW09109]
gi|420301832|ref|ZP_14803867.1| poly(A) polymerase I [Escherichia coli TW10119]
gi|420307385|ref|ZP_14809361.1| poly(A) polymerase I [Escherichia coli EC1738]
gi|420313081|ref|ZP_14814996.1| poly(A) polymerase I [Escherichia coli EC1734]
gi|420323797|ref|ZP_14825588.1| poly(A) polymerase [Shigella flexneri CCH060]
gi|420334403|ref|ZP_14836026.1| poly(A) polymerase [Shigella flexneri K-315]
gi|420345232|ref|ZP_14846667.1| poly(A) polymerase [Shigella boydii 965-58]
gi|420351016|ref|ZP_14852219.1| poly(A) polymerase [Shigella boydii 4444-74]
gi|420356710|ref|ZP_14857736.1| poly(A) polymerase [Shigella sonnei 3226-85]
gi|420361744|ref|ZP_14862676.1| poly(A) polymerase I [Shigella sonnei 4822-66]
gi|420389473|ref|ZP_14888747.1| poly(A) polymerase I [Escherichia coli EPEC C342-62]
gi|421685497|ref|ZP_16125271.1| poly(A) polymerase I [Shigella flexneri 1485-80]
gi|421810288|ref|ZP_16246108.1| poly(A) polymerase [Escherichia coli 8.0416]
gi|421816361|ref|ZP_16251934.1| poly(A) polymerase [Escherichia coli 10.0821]
gi|421821755|ref|ZP_16257200.1| poly(A) polymerase I [Escherichia coli FRIK920]
gi|421828508|ref|ZP_16263840.1| poly(A) polymerase I [Escherichia coli PA7]
gi|422354225|ref|ZP_16434967.1| polynucleotide adenylyltransferase [Escherichia coli MS 117-3]
gi|422360959|ref|ZP_16441587.1| polynucleotide adenylyltransferase [Escherichia coli MS 110-3]
gi|422362622|ref|ZP_16443183.1| polynucleotide adenylyltransferase [Escherichia coli MS 153-1]
gi|422367533|ref|ZP_16447968.1| polynucleotide adenylyltransferase [Escherichia coli MS 16-3]
gi|422376496|ref|ZP_16456747.1| polynucleotide adenylyltransferase [Escherichia coli MS 60-1]
gi|422380498|ref|ZP_16460676.1| polynucleotide adenylyltransferase [Escherichia coli MS 57-2]
gi|422750466|ref|ZP_16804376.1| poly(A) polymerase [Escherichia coli H252]
gi|422756485|ref|ZP_16810308.1| poly(A) polymerase [Escherichia coli H263]
gi|422761821|ref|ZP_16815579.1| poly(A) polymerase [Escherichia coli E1167]
gi|422768399|ref|ZP_16822124.1| poly(A) polymerase [Escherichia coli E1520]
gi|422772934|ref|ZP_16826620.1| poly(A) polymerase [Escherichia coli E482]
gi|422776782|ref|ZP_16830436.1| poly(A) polymerase [Escherichia coli H120]
gi|422792794|ref|ZP_16845493.1| poly(A) polymerase [Escherichia coli TA007]
gi|422816159|ref|ZP_16864374.1| Poly(A) polymerase [Escherichia coli M919]
gi|422830309|ref|ZP_16878468.1| Poly(A) polymerase [Escherichia coli B093]
gi|422834435|ref|ZP_16882497.1| Poly(A) polymerase [Escherichia coli E101]
gi|422839854|ref|ZP_16887825.1| Poly(A) polymerase [Escherichia coli H397]
gi|423652508|ref|ZP_17627912.1| poly(A) polymerase I [Escherichia coli PA31]
gi|423700925|ref|ZP_17675384.1| Poly(A) polymerase [Escherichia coli H730]
gi|424074904|ref|ZP_17812296.1| poly(A) polymerase I [Escherichia coli FDA505]
gi|424081154|ref|ZP_17818061.1| poly(A) polymerase I [Escherichia coli FDA517]
gi|424087830|ref|ZP_17824132.1| poly(A) polymerase I [Escherichia coli FRIK1996]
gi|424094040|ref|ZP_17829853.1| poly(A) polymerase I [Escherichia coli FRIK1985]
gi|424100453|ref|ZP_17835662.1| poly(A) polymerase I [Escherichia coli FRIK1990]
gi|424107277|ref|ZP_17841898.1| poly(A) polymerase I [Escherichia coli 93-001]
gi|424113251|ref|ZP_17847450.1| poly(A) polymerase I [Escherichia coli PA3]
gi|424119380|ref|ZP_17853139.1| poly(A) polymerase I [Escherichia coli PA5]
gi|424125597|ref|ZP_17858839.1| poly(A) polymerase I [Escherichia coli PA9]
gi|424131604|ref|ZP_17864460.1| poly(A) polymerase I [Escherichia coli PA10]
gi|424138217|ref|ZP_17870559.1| poly(A) polymerase I [Escherichia coli PA14]
gi|424144671|ref|ZP_17876479.1| poly(A) polymerase I [Escherichia coli PA15]
gi|424150817|ref|ZP_17882123.1| poly(A) polymerase I [Escherichia coli PA24]
gi|424260169|ref|ZP_17893105.1| poly(A) polymerase I [Escherichia coli PA25]
gi|424260854|ref|ZP_17893440.1| poly(A) polymerase I [Escherichia coli PA28]
gi|424417092|ref|ZP_17899212.1| poly(A) polymerase I [Escherichia coli PA32]
gi|424453215|ref|ZP_17904802.1| poly(A) polymerase I [Escherichia coli PA33]
gi|424459494|ref|ZP_17910502.1| poly(A) polymerase I [Escherichia coli PA39]
gi|424465956|ref|ZP_17916193.1| poly(A) polymerase I [Escherichia coli PA41]
gi|424472556|ref|ZP_17922268.1| poly(A) polymerase I [Escherichia coli PA42]
gi|424478526|ref|ZP_17927815.1| poly(A) polymerase I [Escherichia coli TW07945]
gi|424484552|ref|ZP_17933471.1| poly(A) polymerase I [Escherichia coli TW09098]
gi|424490645|ref|ZP_17939119.1| poly(A) polymerase I [Escherichia coli TW09195]
gi|424497766|ref|ZP_17945089.1| poly(A) polymerase I [Escherichia coli EC4203]
gi|424504011|ref|ZP_17950836.1| poly(A) polymerase I [Escherichia coli EC4196]
gi|424510254|ref|ZP_17956557.1| poly(A) polymerase I [Escherichia coli TW14313]
gi|424517834|ref|ZP_17962308.1| poly(A) polymerase I [Escherichia coli TW14301]
gi|424523663|ref|ZP_17967730.1| poly(A) polymerase I [Escherichia coli EC4421]
gi|424529868|ref|ZP_17973537.1| poly(A) polymerase I [Escherichia coli EC4422]
gi|424535840|ref|ZP_17979148.1| poly(A) polymerase I [Escherichia coli EC4013]
gi|424541726|ref|ZP_17984611.1| poly(A) polymerase I [Escherichia coli EC4402]
gi|424548053|ref|ZP_17990315.1| poly(A) polymerase I [Escherichia coli EC4439]
gi|424554342|ref|ZP_17996110.1| poly(A) polymerase I [Escherichia coli EC4436]
gi|424560688|ref|ZP_18002014.1| poly(A) polymerase I [Escherichia coli EC4437]
gi|424566698|ref|ZP_18007664.1| poly(A) polymerase I [Escherichia coli EC4448]
gi|424572896|ref|ZP_18013367.1| poly(A) polymerase I [Escherichia coli EC1845]
gi|424584724|ref|ZP_18024344.1| poly(A) polymerase I [Escherichia coli EC1863]
gi|425095537|ref|ZP_18498597.1| poly(A) polymerase [Escherichia coli 3.4870]
gi|425101621|ref|ZP_18504309.1| poly(A) polymerase [Escherichia coli 5.2239]
gi|425107479|ref|ZP_18509764.1| poly(A) polymerase [Escherichia coli 6.0172]
gi|425123291|ref|ZP_18524906.1| poly(A) polymerase [Escherichia coli 8.0586]
gi|425129317|ref|ZP_18530460.1| poly(A) polymerase [Escherichia coli 8.2524]
gi|425135659|ref|ZP_18536428.1| poly(A) polymerase [Escherichia coli 10.0833]
gi|425141605|ref|ZP_18541937.1| poly(A) polymerase [Escherichia coli 10.0869]
gi|425147881|ref|ZP_18547818.1| poly(A) polymerase [Escherichia coli 88.0221]
gi|425153497|ref|ZP_18553084.1| poly(A) polymerase I [Escherichia coli PA34]
gi|425159957|ref|ZP_18559167.1| poly(A) polymerase I [Escherichia coli FDA506]
gi|425165473|ref|ZP_18564316.1| poly(A) polymerase I [Escherichia coli FDA507]
gi|425171759|ref|ZP_18570196.1| poly(A) polymerase I [Escherichia coli FDA504]
gi|425177562|ref|ZP_18575649.1| poly(A) polymerase I [Escherichia coli FRIK1999]
gi|425183786|ref|ZP_18581446.1| poly(A) polymerase I [Escherichia coli FRIK1997]
gi|425190519|ref|ZP_18587678.1| poly(A) polymerase I [Escherichia coli NE1487]
gi|425196816|ref|ZP_18593508.1| poly(A) polymerase I [Escherichia coli NE037]
gi|425203514|ref|ZP_18599676.1| poly(A) polymerase I [Escherichia coli FRIK2001]
gi|425209288|ref|ZP_18605060.1| poly(A) polymerase [Escherichia coli PA4]
gi|425215326|ref|ZP_18610680.1| poly(A) polymerase I [Escherichia coli PA23]
gi|425221892|ref|ZP_18616787.1| poly(A) polymerase I [Escherichia coli PA49]
gi|425228144|ref|ZP_18622576.1| poly(A) polymerase I [Escherichia coli PA45]
gi|425234444|ref|ZP_18628438.1| poly(A) polymerase I [Escherichia coli TT12B]
gi|425240420|ref|ZP_18634089.1| poly(A) polymerase I [Escherichia coli MA6]
gi|425246499|ref|ZP_18639738.1| poly(A) polymerase I [Escherichia coli 5905]
gi|425252289|ref|ZP_18645208.1| poly(A) polymerase I [Escherichia coli CB7326]
gi|425258622|ref|ZP_18651027.1| poly(A) polymerase I [Escherichia coli EC96038]
gi|425264738|ref|ZP_18656694.1| poly(A) polymerase I [Escherichia coli 5412]
gi|425270851|ref|ZP_18662376.1| poly(A) polymerase I [Escherichia coli TW15901]
gi|425276011|ref|ZP_18667367.1| poly(A) polymerase I [Escherichia coli ARS4.2123]
gi|425281473|ref|ZP_18672604.1| poly(A) polymerase I [Escherichia coli TW00353]
gi|425292120|ref|ZP_18682758.1| poly(A) polymerase I [Escherichia coli PA38]
gi|425298315|ref|ZP_18688373.1| poly(A) polymerase I [Escherichia coli 07798]
gi|425303654|ref|ZP_18693469.1| poly(A) polymerase I [Escherichia coli N1]
gi|425308899|ref|ZP_18698411.1| poly(A) polymerase I [Escherichia coli EC1735]
gi|425314827|ref|ZP_18703945.1| poly(A) polymerase I [Escherichia coli EC1736]
gi|425320904|ref|ZP_18709624.1| poly(A) polymerase I [Escherichia coli EC1737]
gi|425327064|ref|ZP_18715336.1| poly(A) polymerase I [Escherichia coli EC1846]
gi|425333253|ref|ZP_18721022.1| poly(A) polymerase I [Escherichia coli EC1847]
gi|425339672|ref|ZP_18726953.1| poly(A) polymerase I [Escherichia coli EC1848]
gi|425345550|ref|ZP_18732398.1| poly(A) polymerase I [Escherichia coli EC1849]
gi|425351766|ref|ZP_18738187.1| poly(A) polymerase I [Escherichia coli EC1850]
gi|425357751|ref|ZP_18743765.1| poly(A) polymerase I [Escherichia coli EC1856]
gi|425363864|ref|ZP_18749466.1| poly(A) polymerase I [Escherichia coli EC1862]
gi|425370298|ref|ZP_18755304.1| poly(A) polymerase I [Escherichia coli EC1864]
gi|425389152|ref|ZP_18772686.1| poly(A) polymerase I [Escherichia coli EC1866]
gi|425389795|ref|ZP_18773290.1| poly(A) polymerase I [Escherichia coli EC1868]
gi|425395919|ref|ZP_18778999.1| poly(A) polymerase I [Escherichia coli EC1869]
gi|425408076|ref|ZP_18790268.1| poly(A) polymerase I [Escherichia coli EC1870]
gi|425408451|ref|ZP_18790640.1| poly(A) polymerase I [Escherichia coli NE098]
gi|425414720|ref|ZP_18796391.1| poly(A) polymerase I [Escherichia coli FRIK523]
gi|425425869|ref|ZP_18806954.1| poly(A) polymerase I [Escherichia coli 0.1304]
gi|428944501|ref|ZP_19017193.1| poly(A) polymerase [Escherichia coli 88.1467]
gi|428950675|ref|ZP_19022856.1| poly(A) polymerase [Escherichia coli 88.1042]
gi|428956521|ref|ZP_19028269.1| poly(A) polymerase [Escherichia coli 89.0511]
gi|428962889|ref|ZP_19034110.1| poly(A) polymerase [Escherichia coli 90.0091]
gi|428968928|ref|ZP_19039595.1| poly(A) polymerase [Escherichia coli 90.0039]
gi|428975522|ref|ZP_19045733.1| poly(A) polymerase [Escherichia coli 90.2281]
gi|428981149|ref|ZP_19050920.1| poly(A) polymerase [Escherichia coli 93.0055]
gi|428987477|ref|ZP_19056804.1| poly(A) polymerase [Escherichia coli 93.0056]
gi|428993288|ref|ZP_19062232.1| poly(A) polymerase [Escherichia coli 94.0618]
gi|428999378|ref|ZP_19067928.1| poly(A) polymerase [Escherichia coli 95.0183]
gi|429005616|ref|ZP_19073585.1| poly(A) polymerase [Escherichia coli 95.1288]
gi|429011978|ref|ZP_19079267.1| poly(A) polymerase [Escherichia coli 95.0943]
gi|429018179|ref|ZP_19084995.1| poly(A) polymerase [Escherichia coli 96.0428]
gi|429023859|ref|ZP_19090310.1| poly(A) polymerase [Escherichia coli 96.0427]
gi|429030163|ref|ZP_19096072.1| poly(A) polymerase [Escherichia coli 96.0939]
gi|429036316|ref|ZP_19101795.1| poly(A) polymerase [Escherichia coli 96.0932]
gi|429042363|ref|ZP_19107401.1| poly(A) polymerase [Escherichia coli 96.0107]
gi|429048120|ref|ZP_19112788.1| poly(A) polymerase [Escherichia coli 97.0003]
gi|429053480|ref|ZP_19117997.1| poly(A) polymerase [Escherichia coli 97.1742]
gi|429059182|ref|ZP_19123352.1| poly(A) polymerase [Escherichia coli 97.0007]
gi|429064564|ref|ZP_19128464.1| poly(A) polymerase [Escherichia coli 99.0672]
gi|429071184|ref|ZP_19134552.1| poly(A) polymerase [Escherichia coli 99.0678]
gi|429076414|ref|ZP_19139644.1| poly(A) polymerase [Escherichia coli 99.0713]
gi|429823626|ref|ZP_19355183.1| poly(A) polymerase [Escherichia coli 96.0109]
gi|429829997|ref|ZP_19360914.1| poly(A) polymerase [Escherichia coli 97.0010]
gi|432356504|ref|ZP_19599752.1| Poly(A) polymerase [Escherichia coli KTE4]
gi|432366002|ref|ZP_19609137.1| Poly(A) polymerase [Escherichia coli KTE5]
gi|432368135|ref|ZP_19611243.1| Poly(A) polymerase [Escherichia coli KTE10]
gi|432384701|ref|ZP_19627614.1| Poly(A) polymerase [Escherichia coli KTE15]
gi|432385530|ref|ZP_19628432.1| Poly(A) polymerase [Escherichia coli KTE16]
gi|432395993|ref|ZP_19638786.1| Poly(A) polymerase [Escherichia coli KTE25]
gi|432405028|ref|ZP_19647752.1| Poly(A) polymerase [Escherichia coli KTE28]
gi|432410146|ref|ZP_19652833.1| Poly(A) polymerase [Escherichia coli KTE39]
gi|432415095|ref|ZP_19657730.1| Poly(A) polymerase [Escherichia coli KTE44]
gi|432430304|ref|ZP_19672754.1| Poly(A) polymerase [Escherichia coli KTE187]
gi|432434693|ref|ZP_19677104.1| Poly(A) polymerase [Escherichia coli KTE188]
gi|432439480|ref|ZP_19681845.1| Poly(A) polymerase [Escherichia coli KTE189]
gi|432444603|ref|ZP_19686914.1| Poly(A) polymerase [Escherichia coli KTE191]
gi|432452898|ref|ZP_19695145.1| Poly(A) polymerase [Escherichia coli KTE193]
gi|432454922|ref|ZP_19697134.1| Poly(A) polymerase [Escherichia coli KTE201]
gi|432469477|ref|ZP_19711533.1| Poly(A) polymerase [Escherichia coli KTE206]
gi|432479468|ref|ZP_19721434.1| Poly(A) polymerase [Escherichia coli KTE210]
gi|432493972|ref|ZP_19735794.1| Poly(A) polymerase [Escherichia coli KTE214]
gi|432510377|ref|ZP_19749237.1| Poly(A) polymerase [Escherichia coli KTE220]
gi|432512342|ref|ZP_19749589.1| Poly(A) polymerase [Escherichia coli KTE224]
gi|432522286|ref|ZP_19759431.1| Poly(A) polymerase [Escherichia coli KTE230]
gi|432552182|ref|ZP_19788916.1| Poly(A) polymerase [Escherichia coli KTE47]
gi|432562064|ref|ZP_19798697.1| Poly(A) polymerase [Escherichia coli KTE51]
gi|432581336|ref|ZP_19817754.1| Poly(A) polymerase [Escherichia coli KTE57]
gi|432586474|ref|ZP_19822847.1| Poly(A) polymerase [Escherichia coli KTE58]
gi|432591147|ref|ZP_19827480.1| Poly(A) polymerase [Escherichia coli KTE60]
gi|432596043|ref|ZP_19832333.1| Poly(A) polymerase [Escherichia coli KTE62]
gi|432606010|ref|ZP_19842210.1| Poly(A) polymerase [Escherichia coli KTE67]
gi|432609850|ref|ZP_19846026.1| Poly(A) polymerase [Escherichia coli KTE72]
gi|432614945|ref|ZP_19851082.1| Poly(A) polymerase [Escherichia coli KTE75]
gi|432625702|ref|ZP_19861691.1| Poly(A) polymerase [Escherichia coli KTE77]
gi|432635462|ref|ZP_19871352.1| Poly(A) polymerase [Escherichia coli KTE81]
gi|432644553|ref|ZP_19880360.1| Poly(A) polymerase [Escherichia coli KTE86]
gi|432649514|ref|ZP_19885284.1| Poly(A) polymerase [Escherichia coli KTE87]
gi|432654187|ref|ZP_19889909.1| Poly(A) polymerase [Escherichia coli KTE93]
gi|432678557|ref|ZP_19913962.1| Poly(A) polymerase [Escherichia coli KTE143]
gi|432684023|ref|ZP_19919346.1| Poly(A) polymerase [Escherichia coli KTE156]
gi|432689927|ref|ZP_19925181.1| Poly(A) polymerase [Escherichia coli KTE161]
gi|432697451|ref|ZP_19932627.1| Poly(A) polymerase [Escherichia coli KTE169]
gi|432702686|ref|ZP_19937818.1| Poly(A) polymerase [Escherichia coli KTE171]
gi|432711832|ref|ZP_19946886.1| Poly(A) polymerase [Escherichia coli KTE8]
gi|432721741|ref|ZP_19956670.1| Poly(A) polymerase [Escherichia coli KTE17]
gi|432726151|ref|ZP_19961040.1| Poly(A) polymerase [Escherichia coli KTE18]
gi|432730866|ref|ZP_19965727.1| Poly(A) polymerase [Escherichia coli KTE45]
gi|432735607|ref|ZP_19970399.1| Poly(A) polymerase [Escherichia coli KTE42]
gi|432739919|ref|ZP_19974642.1| Poly(A) polymerase [Escherichia coli KTE23]
gi|432744070|ref|ZP_19978779.1| Poly(A) polymerase [Escherichia coli KTE43]
gi|432752970|ref|ZP_19987541.1| Poly(A) polymerase [Escherichia coli KTE29]
gi|432757659|ref|ZP_19992193.1| Poly(A) polymerase [Escherichia coli KTE22]
gi|432762417|ref|ZP_19996881.1| Poly(A) polymerase [Escherichia coli KTE46]
gi|432777028|ref|ZP_20011284.1| Poly(A) polymerase [Escherichia coli KTE59]
gi|432782032|ref|ZP_20016219.1| Poly(A) polymerase [Escherichia coli KTE63]
gi|432790728|ref|ZP_20024849.1| Poly(A) polymerase [Escherichia coli KTE65]
gi|432800471|ref|ZP_20034462.1| Poly(A) polymerase [Escherichia coli KTE84]
gi|432808777|ref|ZP_20042687.1| Poly(A) polymerase [Escherichia coli KTE91]
gi|432819495|ref|ZP_20053210.1| Poly(A) polymerase [Escherichia coli KTE118]
gi|432825624|ref|ZP_20059281.1| Poly(A) polymerase [Escherichia coli KTE123]
gi|432830119|ref|ZP_20063729.1| Poly(A) polymerase [Escherichia coli KTE135]
gi|432842405|ref|ZP_20075833.1| Poly(A) polymerase [Escherichia coli KTE141]
gi|432858448|ref|ZP_20084944.1| Poly(A) polymerase [Escherichia coli KTE146]
gi|432892716|ref|ZP_20104883.1| Poly(A) polymerase [Escherichia coli KTE165]
gi|432896816|ref|ZP_20107910.1| Poly(A) polymerase [Escherichia coli KTE192]
gi|432902445|ref|ZP_20112193.1| Poly(A) polymerase [Escherichia coli KTE194]
gi|432932404|ref|ZP_20132306.1| Poly(A) polymerase [Escherichia coli KTE184]
gi|432941839|ref|ZP_20139337.1| Poly(A) polymerase [Escherichia coli KTE183]
gi|432944709|ref|ZP_20141119.1| Poly(A) polymerase [Escherichia coli KTE196]
gi|432952800|ref|ZP_20145543.1| Poly(A) polymerase [Escherichia coli KTE197]
gi|432966285|ref|ZP_20155205.1| Poly(A) polymerase [Escherichia coli KTE203]
gi|432970281|ref|ZP_20159163.1| Poly(A) polymerase [Escherichia coli KTE207]
gi|432976849|ref|ZP_20165676.1| Poly(A) polymerase [Escherichia coli KTE209]
gi|432983867|ref|ZP_20172609.1| Poly(A) polymerase [Escherichia coli KTE215]
gi|432989085|ref|ZP_20177758.1| Poly(A) polymerase [Escherichia coli KTE217]
gi|432993901|ref|ZP_20182522.1| Poly(A) polymerase [Escherichia coli KTE218]
gi|432998319|ref|ZP_20186869.1| Poly(A) polymerase [Escherichia coli KTE223]
gi|433003686|ref|ZP_20192125.1| Poly(A) polymerase [Escherichia coli KTE227]
gi|433010893|ref|ZP_20199298.1| Poly(A) polymerase [Escherichia coli KTE229]
gi|433012318|ref|ZP_20200707.1| Poly(A) polymerase [Escherichia coli KTE104]
gi|433026513|ref|ZP_20214467.1| Poly(A) polymerase [Escherichia coli KTE106]
gi|433027163|ref|ZP_20215043.1| Poly(A) polymerase [Escherichia coli KTE109]
gi|433031550|ref|ZP_20219375.1| Poly(A) polymerase [Escherichia coli KTE112]
gi|433037070|ref|ZP_20224698.1| Poly(A) polymerase [Escherichia coli KTE113]
gi|433041639|ref|ZP_20229178.1| Poly(A) polymerase [Escherichia coli KTE117]
gi|433046193|ref|ZP_20233637.1| Poly(A) polymerase [Escherichia coli KTE120]
gi|433056470|ref|ZP_20243571.1| Poly(A) polymerase [Escherichia coli KTE124]
gi|433076303|ref|ZP_20262883.1| Poly(A) polymerase [Escherichia coli KTE131]
gi|433081049|ref|ZP_20267529.1| Poly(A) polymerase [Escherichia coli KTE133]
gi|433085796|ref|ZP_20272206.1| Poly(A) polymerase [Escherichia coli KTE137]
gi|433099683|ref|ZP_20285804.1| Poly(A) polymerase [Escherichia coli KTE145]
gi|433109320|ref|ZP_20295204.1| Poly(A) polymerase [Escherichia coli KTE150]
gi|433114081|ref|ZP_20299906.1| Poly(A) polymerase [Escherichia coli KTE153]
gi|433118621|ref|ZP_20304344.1| Poly(A) polymerase [Escherichia coli KTE157]
gi|433123742|ref|ZP_20309341.1| Poly(A) polymerase [Escherichia coli KTE160]
gi|433137811|ref|ZP_20323105.1| Poly(A) polymerase [Escherichia coli KTE167]
gi|433142643|ref|ZP_20327829.1| Poly(A) polymerase [Escherichia coli KTE168]
gi|433147563|ref|ZP_20332650.1| Poly(A) polymerase [Escherichia coli KTE174]
gi|433152280|ref|ZP_20337254.1| Poly(A) polymerase [Escherichia coli KTE176]
gi|433161926|ref|ZP_20346696.1| Poly(A) polymerase [Escherichia coli KTE179]
gi|433166861|ref|ZP_20351547.1| Poly(A) polymerase [Escherichia coli KTE180]
gi|433191466|ref|ZP_20375533.1| Poly(A) polymerase [Escherichia coli KTE88]
gi|433191933|ref|ZP_20375966.1| Poly(A) polymerase [Escherichia coli KTE90]
gi|433196714|ref|ZP_20380652.1| Poly(A) polymerase [Escherichia coli KTE94]
gi|433206314|ref|ZP_20390023.1| Poly(A) polymerase [Escherichia coli KTE97]
gi|433211063|ref|ZP_20394687.1| Poly(A) polymerase [Escherichia coli KTE99]
gi|442594040|ref|ZP_21011963.1| Poly(A) polymerase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|442607326|ref|ZP_21022103.1| Poly(A) polymerase [Escherichia coli Nissle 1917]
gi|444922341|ref|ZP_21242105.1| poly(A) polymerase [Escherichia coli 09BKT078844]
gi|444928658|ref|ZP_21247830.1| poly(A) polymerase [Escherichia coli 99.0814]
gi|444934057|ref|ZP_21253021.1| poly(A) polymerase [Escherichia coli 99.0815]
gi|444939626|ref|ZP_21258296.1| poly(A) polymerase [Escherichia coli 99.0816]
gi|444945202|ref|ZP_21263640.1| poly(A) polymerase [Escherichia coli 99.0839]
gi|444950749|ref|ZP_21268993.1| poly(A) polymerase [Escherichia coli 99.0848]
gi|444956223|ref|ZP_21274247.1| poly(A) polymerase [Escherichia coli 99.1753]
gi|444961509|ref|ZP_21279284.1| poly(A) polymerase [Escherichia coli 99.1775]
gi|444967285|ref|ZP_21284771.1| poly(A) polymerase [Escherichia coli 99.1793]
gi|444972790|ref|ZP_21290094.1| poly(A) polymerase [Escherichia coli 99.1805]
gi|444978300|ref|ZP_21295308.1| poly(A) polymerase [Escherichia coli ATCC 700728]
gi|444983621|ref|ZP_21300497.1| poly(A) polymerase [Escherichia coli PA11]
gi|444988863|ref|ZP_21305614.1| poly(A) polymerase [Escherichia coli PA19]
gi|444994176|ref|ZP_21310787.1| poly(A) polymerase [Escherichia coli PA13]
gi|444999691|ref|ZP_21316166.1| poly(A) polymerase [Escherichia coli PA2]
gi|445005152|ref|ZP_21321506.1| poly(A) polymerase [Escherichia coli PA47]
gi|445010332|ref|ZP_21326538.1| poly(A) polymerase [Escherichia coli PA48]
gi|445016094|ref|ZP_21332155.1| poly(A) polymerase [Escherichia coli PA8]
gi|445021567|ref|ZP_21337501.1| poly(A) polymerase [Escherichia coli 7.1982]
gi|445026809|ref|ZP_21342598.1| poly(A) polymerase [Escherichia coli 99.1781]
gi|445032284|ref|ZP_21347922.1| poly(A) polymerase [Escherichia coli 99.1762]
gi|445037980|ref|ZP_21353463.1| poly(A) polymerase [Escherichia coli PA35]
gi|445043151|ref|ZP_21358500.1| poly(A) polymerase [Escherichia coli 3.4880]
gi|445048803|ref|ZP_21363986.1| poly(A) polymerase [Escherichia coli 95.0083]
gi|445054423|ref|ZP_21369385.1| poly(A) polymerase [Escherichia coli 99.0670]
gi|25389668|pir||C90647 poly(A) polymerase I [imported] - Escherichia coli (strain O157:H7,
substrain RIMD 0509952)
gi|13359603|dbj|BAB33570.1| poly(A) polymerase I [Escherichia coli O157:H7 str. Sakai]
gi|73854241|gb|AAZ86948.1| poly(A) polymerase I [Shigella sonnei Ss046]
gi|115511554|gb|ABI99628.1| poly(A) polymerase I [Escherichia coli APEC O1]
gi|170518042|gb|ACB16220.1| poly(A) polymerase [Escherichia coli SMS-3-5]
gi|187428215|gb|ACD07489.1| poly(A) polymerase [Shigella boydii CDC 3083-94]
gi|188014580|gb|EDU52702.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4113]
gi|188488673|gb|EDU63776.1| poly(A) polymerase [Escherichia coli 53638]
gi|189000464|gb|EDU69450.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4076]
gi|189356985|gb|EDU75404.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4401]
gi|189360734|gb|EDU79153.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4486]
gi|189365327|gb|EDU83743.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4501]
gi|189371104|gb|EDU89520.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC869]
gi|189376394|gb|EDU94810.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC508]
gi|190903587|gb|EDV63304.1| poly(A) polymerase [Escherichia coli B7A]
gi|190906921|gb|EDV66523.1| poly(A) polymerase [Escherichia coli F11]
gi|192931074|gb|EDV83677.1| poly(A) polymerase [Escherichia coli E22]
gi|194413654|gb|EDX29934.1| poly(A) polymerase [Escherichia coli B171]
gi|194418322|gb|EDX34412.1| poly(A) polymerase [Shigella dysenteriae 1012]
gi|208726943|gb|EDZ76544.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4206]
gi|208735864|gb|EDZ84551.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4045]
gi|208741461|gb|EDZ89143.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4042]
gi|209159937|gb|ACI37370.1| poly(A) polymerase [Escherichia coli O157:H7 str. EC4115]
gi|209746094|gb|ACI71354.1| poly(A) polymerase I [Escherichia coli]
gi|209746096|gb|ACI71355.1| poly(A) polymerase I [Escherichia coli]
gi|209746098|gb|ACI71356.1| poly(A) polymerase I [Escherichia coli]
gi|209746100|gb|ACI71357.1| poly(A) polymerase I [Escherichia coli]
gi|209746102|gb|ACI71358.1| poly(A) polymerase I [Escherichia coli]
gi|215263375|emb|CAS07694.1| poly(A) polymerase I [Escherichia coli O127:H6 str. E2348/69]
gi|217322438|gb|EEC30862.1| poly(A) polymerase [Escherichia coli O157:H7 str. TW14588]
gi|227838081|gb|EEJ48547.1| polynucleotide adenylyltransferase [Escherichia coli 83972]
gi|257757524|dbj|BAI29021.1| poly(A) polymerase I [Escherichia coli O103:H2 str. 12009]
gi|260450652|gb|ACX41074.1| poly(A) polymerase [Escherichia coli DH1]
gi|294490657|gb|ADE89413.1| poly(A) polymerase [Escherichia coli IHE3034]
gi|299878345|gb|EFI86556.1| polynucleotide adenylyltransferase [Escherichia coli MS 196-1]
gi|300298309|gb|EFJ54694.1| polynucleotide adenylyltransferase [Escherichia coli MS 185-1]
gi|300306620|gb|EFJ61140.1| polynucleotide adenylyltransferase [Escherichia coli MS 200-1]
gi|300317139|gb|EFJ66923.1| polynucleotide adenylyltransferase [Escherichia coli MS 175-1]
gi|300406499|gb|EFJ90037.1| polynucleotide adenylyltransferase [Escherichia coli MS 45-1]
gi|300450779|gb|EFK14399.1| polynucleotide adenylyltransferase [Escherichia coli MS 116-1]
gi|300456499|gb|EFK19992.1| polynucleotide adenylyltransferase [Escherichia coli MS 21-1]
gi|300531388|gb|EFK52450.1| polynucleotide adenylyltransferase [Escherichia coli MS 107-1]
gi|301075330|gb|EFK90136.1| polynucleotide adenylyltransferase [Escherichia coli MS 146-1]
gi|306908387|gb|EFN38885.1| poly(A) polymerase [Escherichia coli W]
gi|308120021|gb|EFO57283.1| polynucleotide adenylyltransferase [Escherichia coli MS 145-7]
gi|312289517|gb|EFR17411.1| poly(A) polymerase family protein [Escherichia coli 2362-75]
gi|315059363|gb|ADT73690.1| poly(A) polymerase I [Escherichia coli W]
gi|315134834|dbj|BAJ41993.1| poly(A) polymerase I [Escherichia coli DH1]
gi|315285223|gb|EFU44668.1| polynucleotide adenylyltransferase [Escherichia coli MS 110-3]
gi|315294623|gb|EFU53970.1| polynucleotide adenylyltransferase [Escherichia coli MS 153-1]
gi|315300716|gb|EFU59943.1| polynucleotide adenylyltransferase [Escherichia coli MS 16-3]
gi|315616374|gb|EFU96992.1| poly(A) polymerase family protein [Escherichia coli 3431]
gi|320177485|gb|EFW52481.1| Poly(A) polymerase [Shigella dysenteriae CDC 74-1112]
gi|320186563|gb|EFW61288.1| Poly(A) polymerase [Shigella flexneri CDC 796-83]
gi|320190332|gb|EFW64982.1| Poly(A) polymerase [Escherichia coli O157:H7 str. EC1212]
gi|320639950|gb|EFX09535.1| poly(A) polymerase I [Escherichia coli O157:H7 str. G5101]
gi|320647543|gb|EFX16338.1| poly(A) polymerase I [Escherichia coli O157:H- str. 493-89]
gi|320652877|gb|EFX21115.1| poly(A) polymerase I [Escherichia coli O157:H- str. H 2687]
gi|320658265|gb|EFX25994.1| poly(A) polymerase I [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320663575|gb|EFX30859.1| poly(A) polymerase I [Escherichia coli O55:H7 str. USDA 5905]
gi|320668887|gb|EFX35682.1| poly(A) polymerase I [Escherichia coli O157:H7 str. LSU-61]
gi|323160155|gb|EFZ46115.1| poly(A) polymerase family protein [Escherichia coli E128010]
gi|323166039|gb|EFZ51819.1| poly(A) polymerase family protein [Shigella sonnei 53G]
gi|323181842|gb|EFZ67255.1| poly(A) polymerase family protein [Escherichia coli OK1357]
gi|323190462|gb|EFZ75737.1| poly(A) polymerase family protein [Escherichia coli RN587/1]
gi|323934984|gb|EGB31357.1| poly(A) polymerase [Escherichia coli E1520]
gi|323939892|gb|EGB36091.1| poly(A) polymerase [Escherichia coli E482]
gi|323945619|gb|EGB41668.1| poly(A) polymerase [Escherichia coli H120]
gi|323950857|gb|EGB46734.1| poly(A) polymerase [Escherichia coli H252]
gi|323955105|gb|EGB50880.1| poly(A) polymerase [Escherichia coli H263]
gi|323970690|gb|EGB65945.1| poly(A) polymerase [Escherichia coli TA007]
gi|324008275|gb|EGB77494.1| polynucleotide adenylyltransferase [Escherichia coli MS 57-2]
gi|324012201|gb|EGB81420.1| polynucleotide adenylyltransferase [Escherichia coli MS 60-1]
gi|324017792|gb|EGB87011.1| polynucleotide adenylyltransferase [Escherichia coli MS 117-3]
gi|324118493|gb|EGC12387.1| poly(A) polymerase [Escherichia coli E1167]
gi|326339802|gb|EGD63610.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1044]
gi|326345137|gb|EGD68880.1| Poly(A) polymerase [Escherichia coli O157:H7 str. 1125]
gi|331040343|gb|EGI12550.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H736]
gi|331051501|gb|EGI23550.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M718]
gi|331052257|gb|EGI24296.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA206]
gi|331081749|gb|EGI52910.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H299]
gi|332095178|gb|EGJ00207.1| poly(A) polymerase family protein [Shigella boydii 5216-82]
gi|332097927|gb|EGJ02900.1| poly(A) polymerase family protein [Shigella dysenteriae 155-74]
gi|332098923|gb|EGJ03874.1| poly(A) polymerase family protein [Shigella boydii 3594-74]
gi|339413128|gb|AEJ54800.1| poly(A) polymerase family protein [Escherichia coli UMNF18]
gi|342926520|gb|EGU95242.1| polyA polymerase [Escherichia coli MS 79-10]
gi|345354739|gb|EGW86957.1| poly(A) polymerase family protein [Escherichia coli STEC_94C]
gi|345363203|gb|EGW95346.1| poly(A) polymerase family protein [Escherichia coli 3030-1]
gi|345366923|gb|EGW99012.1| poly(A) polymerase family protein [Escherichia coli STEC_DG131-3]
gi|345367127|gb|EGW99214.1| poly(A) polymerase family protein [Escherichia coli STEC_EH250]
gi|345368215|gb|EGX00222.1| poly(A) polymerase family protein [Escherichia coli STEC_MHI813]
gi|345384227|gb|EGX14096.1| poly(A) polymerase family protein [Escherichia coli G58-1]
gi|345387134|gb|EGX16962.1| poly(A) polymerase family protein [Escherichia coli STEC_H.1.8]
gi|345392138|gb|EGX21924.1| poly(A) polymerase family protein [Escherichia coli STEC_S1191]
gi|349736294|gb|AEQ11000.1| poly(A) polymerase I [Escherichia coli O7:K1 str. CE10]
gi|355353420|gb|EHG02587.1| poly(A) polymerase I [Escherichia coli cloneA_i1]
gi|371601955|gb|EHN90674.1| Poly(A) polymerase [Escherichia coli E101]
gi|371605301|gb|EHN93918.1| Poly(A) polymerase [Escherichia coli B093]
gi|371608338|gb|EHN96894.1| Poly(A) polymerase [Escherichia coli H397]
gi|377850535|gb|EHU15497.1| poly(A) polymerase I [Escherichia coli DEC1A]
gi|377851602|gb|EHU16547.1| poly(A) polymerase I [Escherichia coli DEC1C]
gi|377855231|gb|EHU20106.1| poly(A) polymerase I [Escherichia coli DEC1B]
gi|377865230|gb|EHU30022.1| poly(A) polymerase [Escherichia coli DEC1D]
gi|377867840|gb|EHU32594.1| poly(A) polymerase I [Escherichia coli DEC1E]
gi|377869307|gb|EHU34024.1| poly(A) polymerase [Escherichia coli DEC2A]
gi|377880893|gb|EHU45459.1| poly(A) polymerase I [Escherichia coli DEC2B]
gi|377884723|gb|EHU49231.1| poly(A) polymerase I [Escherichia coli DEC2D]
gi|377886353|gb|EHU50835.1| poly(A) polymerase I [Escherichia coli DEC2C]
gi|377887442|gb|EHU51919.1| poly(A) polymerase I [Escherichia coli DEC3A]
gi|377888818|gb|EHU53289.1| poly(A) polymerase I [Escherichia coli DEC3B]
gi|377899407|gb|EHU63755.1| poly(A) polymerase I [Escherichia coli DEC2E]
gi|377915420|gb|EHU79529.1| poly(A) polymerase I [Escherichia coli DEC3C]
gi|377919698|gb|EHU83736.1| poly(A) polymerase I [Escherichia coli DEC3D]
gi|377921884|gb|EHU85879.1| poly(A) polymerase I [Escherichia coli DEC3E]
gi|377922334|gb|EHU86326.1| poly(A) polymerase I [Escherichia coli DEC4A]
gi|377925832|gb|EHU89772.1| poly(A) polymerase I [Escherichia coli DEC4B]
gi|377933684|gb|EHU97528.1| poly(A) polymerase I [Escherichia coli DEC3F]
gi|377935901|gb|EHU99695.1| poly(A) polymerase I [Escherichia coli DEC4D]
gi|377936215|gb|EHV00009.1| poly(A) polymerase I [Escherichia coli DEC4C]
gi|377942669|gb|EHV06403.1| poly(A) polymerase I [Escherichia coli DEC4E]
gi|377953258|gb|EHV16839.1| poly(A) polymerase I [Escherichia coli DEC4F]
gi|377966818|gb|EHV30228.1| poly(A) polymerase I [Escherichia coli DEC5A]
gi|377974702|gb|EHV38029.1| poly(A) polymerase I [Escherichia coli DEC5B]
gi|377978905|gb|EHV42184.1| poly(A) polymerase [Escherichia coli DEC5E]
gi|377983610|gb|EHV46854.1| poly(A) polymerase I [Escherichia coli DEC5D]
gi|377983689|gb|EHV46931.1| poly(A) polymerase I [Escherichia coli DEC5C]
gi|378001027|gb|EHV64089.1| poly(A) polymerase [Escherichia coli DEC6A]
gi|378002458|gb|EHV65509.1| poly(A) polymerase I [Escherichia coli DEC6B]
gi|378004394|gb|EHV67417.1| poly(A) polymerase [Escherichia coli DEC6C]
gi|378016068|gb|EHV78958.1| poly(A) polymerase [Escherichia coli DEC6D]
gi|378017553|gb|EHV80425.1| poly(A) polymerase I [Escherichia coli DEC6E]
gi|378123584|gb|EHW85002.1| poly(A) polymerase I [Escherichia coli DEC11A]
gi|378135165|gb|EHW96478.1| poly(A) polymerase I [Escherichia coli DEC10E]
gi|378137361|gb|EHW98644.1| poly(A) polymerase I [Escherichia coli DEC11B]
gi|378158462|gb|EHX19487.1| poly(A) polymerase [Escherichia coli DEC11C]
gi|378162324|gb|EHX23289.1| poly(A) polymerase [Escherichia coli DEC11E]
gi|378176484|gb|EHX37290.1| poly(A) polymerase [Escherichia coli DEC12A]
gi|378176852|gb|EHX37657.1| poly(A) polymerase I [Escherichia coli DEC12B]
gi|378177885|gb|EHX38673.1| poly(A) polymerase [Escherichia coli DEC12C]
gi|378192574|gb|EHX53132.1| poly(A) polymerase I [Escherichia coli DEC12D]
gi|378194425|gb|EHX54940.1| poly(A) polymerase I [Escherichia coli DEC12E]
gi|378223363|gb|EHX83587.1| poly(A) polymerase [Escherichia coli DEC14A]
gi|378227540|gb|EHX87710.1| poly(A) polymerase I [Escherichia coli DEC14B]
gi|378235503|gb|EHX95573.1| poly(A) polymerase I [Escherichia coli DEC14C]
gi|378237925|gb|EHX97939.1| poly(A) polymerase I [Escherichia coli DEC14D]
gi|383390169|gb|AFH15127.1| poly(A) polymerase I [Escherichia coli KO11FL]
gi|383403564|gb|AFH09807.1| poly(A) polymerase I [Escherichia coli W]
gi|384377812|gb|EIE35705.1| poly(A) polymerase I [Escherichia coli J53]
gi|384470114|gb|EIE54238.1| poly(A) polymerase I [Escherichia coli AI27]
gi|385540558|gb|EIF87379.1| Poly(A) polymerase [Escherichia coli M919]
gi|385713625|gb|EIG50556.1| Poly(A) polymerase [Escherichia coli H730]
gi|386123777|gb|EIG72366.1| Poly(A) polymerase [Escherichia sp. 4_1_40B]
gi|386159862|gb|EIH21676.1| polynucleotide adenylyltransferase [Escherichia coli 1.2264]
gi|386178230|gb|EIH55709.1| polynucleotide adenylyltransferase [Escherichia coli 3.2608]
gi|386185050|gb|EIH67786.1| polynucleotide adenylyltransferase [Escherichia coli 93.0624]
gi|386199601|gb|EIH98592.1| polynucleotide adenylyltransferase [Escherichia coli 96.154]
gi|386206648|gb|EII11154.1| polynucleotide adenylyltransferase [Escherichia coli 5.0959]
gi|386216440|gb|EII32929.1| polynucleotide adenylyltransferase [Escherichia coli 4.0967]
gi|386222846|gb|EII45260.1| polynucleotide adenylyltransferase [Escherichia coli 2.3916]
gi|386233674|gb|EII65654.1| polynucleotide adenylyltransferase [Escherichia coli 2.4168]
gi|386239287|gb|EII76217.1| polynucleotide adenylyltransferase [Escherichia coli 3.2303]
gi|386242782|gb|EII84517.1| polynucleotide adenylyltransferase [Escherichia coli 3003]
gi|386248871|gb|EII95043.1| polynucleotide adenylyltransferase [Escherichia coli TW07793]
gi|386252420|gb|EIJ02112.1| polynucleotide adenylyltransferase [Escherichia coli B41]
gi|388391215|gb|EIL52688.1| poly(A) polymerase I [Escherichia coli KD1]
gi|388397156|gb|EIL58190.1| poly(A) polymerase I [Escherichia coli 541-15]
gi|388403357|gb|EIL63888.1| poly(A) polymerase I [Escherichia coli 541-1]
gi|388411177|gb|EIL71361.1| poly(A) polymerase I [Escherichia coli 75]
gi|388414746|gb|EIL74695.1| poly(A) polymerase I [Escherichia coli CUMT8]
gi|388422983|gb|EIL82532.1| poly(A) polymerase I [Escherichia coli HM605]
gi|390651597|gb|EIN29868.1| poly(A) polymerase I [Escherichia coli FRIK1996]
gi|390654219|gb|EIN32272.1| poly(A) polymerase I [Escherichia coli FDA517]
gi|390654513|gb|EIN32559.1| poly(A) polymerase I [Escherichia coli FDA505]
gi|390670975|gb|EIN47463.1| poly(A) polymerase I [Escherichia coli 93-001]
gi|390674898|gb|EIN51063.1| poly(A) polymerase I [Escherichia coli FRIK1990]
gi|390676365|gb|EIN52471.1| poly(A) polymerase I [Escherichia coli FRIK1985]
gi|390690014|gb|EIN64916.1| poly(A) polymerase I [Escherichia coli PA3]
gi|390693809|gb|EIN68426.1| poly(A) polymerase I [Escherichia coli PA9]
gi|390694771|gb|EIN69329.1| poly(A) polymerase I [Escherichia coli PA5]
gi|390709594|gb|EIN82676.1| poly(A) polymerase I [Escherichia coli PA10]
gi|390712030|gb|EIN84988.1| poly(A) polymerase I [Escherichia coli PA15]
gi|390715169|gb|EIN88036.1| poly(A) polymerase I [Escherichia coli PA14]
gi|390716691|gb|EIN89486.1| poly(A) polymerase I [Escherichia coli PA25]
gi|390721793|gb|EIN94487.1| poly(A) polymerase I [Escherichia coli PA22]
gi|390735048|gb|EIO06477.1| poly(A) polymerase I [Escherichia coli PA24]
gi|390738317|gb|EIO09535.1| poly(A) polymerase I [Escherichia coli PA28]
gi|390753228|gb|EIO22951.1| poly(A) polymerase I [Escherichia coli PA31]
gi|390753688|gb|EIO23365.1| poly(A) polymerase I [Escherichia coli PA32]
gi|390758146|gb|EIO27614.1| poly(A) polymerase I [Escherichia coli PA33]
gi|390763404|gb|EIO32653.1| poly(A) polymerase I [Escherichia coli PA40]
gi|390777284|gb|EIO45128.1| poly(A) polymerase I [Escherichia coli PA41]
gi|390778260|gb|EIO46018.1| poly(A) polymerase I [Escherichia coli TW06591]
gi|390781184|gb|EIO48868.1| poly(A) polymerase I [Escherichia coli PA42]
gi|390788081|gb|EIO55551.1| poly(A) polymerase I [Escherichia coli PA39]
gi|390796432|gb|EIO63708.1| poly(A) polymerase I [Escherichia coli TW10246]
gi|390802891|gb|EIO69920.1| poly(A) polymerase I [Escherichia coli TW11039]
gi|390812177|gb|EIO78860.1| poly(A) polymerase I [Escherichia coli TW07945]
gi|390812685|gb|EIO79361.1| poly(A) polymerase I [Escherichia coli TW09109]
gi|390820425|gb|EIO86731.1| poly(A) polymerase I [Escherichia coli TW10119]
gi|390824946|gb|EIO90895.1| poly(A) polymerase I [Escherichia coli TW09098]
gi|390838058|gb|EIP02376.1| poly(A) polymerase I [Escherichia coli EC4203]
gi|390841088|gb|EIP05059.1| poly(A) polymerase I [Escherichia coli EC4196]
gi|390845179|gb|EIP08855.1| poly(A) polymerase I [Escherichia coli TW09195]
gi|390856657|gb|EIP19228.1| poly(A) polymerase I [Escherichia coli TW14301]
gi|390861528|gb|EIP23776.1| poly(A) polymerase I [Escherichia coli EC4421]
gi|390862656|gb|EIP24831.1| poly(A) polymerase I [Escherichia coli TW14313]
gi|390872567|gb|EIP33856.1| poly(A) polymerase I [Escherichia coli EC4422]
gi|390877778|gb|EIP38673.1| poly(A) polymerase I [Escherichia coli EC4013]
gi|390887408|gb|EIP47384.1| poly(A) polymerase I [Escherichia coli EC4402]
gi|390888976|gb|EIP48758.1| poly(A) polymerase I [Escherichia coli EC4439]
gi|390896441|gb|EIP55831.1| poly(A) polymerase I [Escherichia coli EC4436]
gi|390904491|gb|EIP63487.1| poly(A) polymerase I [Escherichia coli EC1738]
gi|390912570|gb|EIP71222.1| poly(A) polymerase I [Escherichia coli EC4437]
gi|390912933|gb|EIP71579.1| poly(A) polymerase I [Escherichia coli EC1734]
gi|390914267|gb|EIP72811.1| poly(A) polymerase I [Escherichia coli EC1863]
gi|390917707|gb|EIP76124.1| poly(A) polymerase I [Escherichia coli EC4448]
gi|390926714|gb|EIP84273.1| poly(A) polymerase I [Escherichia coli EC1845]
gi|391258074|gb|EIQ17181.1| poly(A) polymerase [Shigella flexneri CCH060]
gi|391268580|gb|EIQ27505.1| poly(A) polymerase [Shigella flexneri K-315]
gi|391277015|gb|EIQ35776.1| poly(A) polymerase [Shigella boydii 965-58]
gi|391289850|gb|EIQ48334.1| poly(A) polymerase [Shigella boydii 4444-74]
gi|391290215|gb|EIQ48690.1| poly(A) polymerase [Shigella sonnei 3233-85]
gi|391290291|gb|EIQ48764.1| poly(A) polymerase [Shigella sonnei 3226-85]
gi|391297327|gb|EIQ55381.1| poly(A) polymerase I [Shigella sonnei 4822-66]
gi|391315706|gb|EIQ73230.1| poly(A) polymerase I [Escherichia coli EPEC C342-62]
gi|397782750|gb|EJK93618.1| poly(A) polymerase family protein [Escherichia coli STEC_O31]
gi|397903798|gb|EJL20093.1| poly(A) polymerase I [Shigella sonnei str. Moseley]
gi|404293049|gb|EEH72669.2| Poly(A) polymerase [Escherichia sp. 1_1_43]
gi|404334724|gb|EJZ61202.1| poly(A) polymerase I [Shigella flexneri 1485-80]
gi|408073634|gb|EKH07943.1| poly(A) polymerase I [Escherichia coli PA7]
gi|408077369|gb|EKH11577.1| poly(A) polymerase I [Escherichia coli FRIK920]
gi|408087382|gb|EKH20831.1| poly(A) polymerase I [Escherichia coli PA34]
gi|408091985|gb|EKH25184.1| poly(A) polymerase I [Escherichia coli FDA506]
gi|408097726|gb|EKH30609.1| poly(A) polymerase I [Escherichia coli FDA507]
gi|408103907|gb|EKH36236.1| poly(A) polymerase I [Escherichia coli FDA504]
gi|408111337|gb|EKH43088.1| poly(A) polymerase I [Escherichia coli FRIK1999]
gi|408117444|gb|EKH48629.1| poly(A) polymerase I [Escherichia coli FRIK1997]
gi|408123140|gb|EKH53942.1| poly(A) polymerase I [Escherichia coli NE1487]
gi|408131394|gb|EKH61436.1| poly(A) polymerase I [Escherichia coli NE037]
gi|408133059|gb|EKH62976.1| poly(A) polymerase I [Escherichia coli FRIK2001]
gi|408142296|gb|EKH71677.1| poly(A) polymerase [Escherichia coli PA4]
gi|408150977|gb|EKH79495.1| poly(A) polymerase I [Escherichia coli PA23]
gi|408154700|gb|EKH83031.1| poly(A) polymerase I [Escherichia coli PA49]
gi|408159768|gb|EKH87820.1| poly(A) polymerase I [Escherichia coli PA45]
gi|408168032|gb|EKH95485.1| poly(A) polymerase I [Escherichia coli TT12B]
gi|408173819|gb|EKI00822.1| poly(A) polymerase I [Escherichia coli MA6]
gi|408175693|gb|EKI02591.1| poly(A) polymerase I [Escherichia coli 5905]
gi|408188008|gb|EKI13897.1| poly(A) polymerase I [Escherichia coli CB7326]
gi|408193740|gb|EKI19258.1| poly(A) polymerase I [Escherichia coli 5412]
gi|408194059|gb|EKI19559.1| poly(A) polymerase I [Escherichia coli EC96038]
gi|408200382|gb|EKI25563.1| poly(A) polymerase I [Escherichia coli TW15901]
gi|408206909|gb|EKI31675.1| poly(A) polymerase I [Escherichia coli TW00353]
gi|408207652|gb|EKI32370.1| poly(A) polymerase I [Escherichia coli ARS4.2123]
gi|408222062|gb|EKI45969.1| poly(A) polymerase I [Escherichia coli 07798]
gi|408232705|gb|EKI55873.1| poly(A) polymerase I [Escherichia coli N1]
gi|408234500|gb|EKI57513.1| poly(A) polymerase I [Escherichia coli PA38]
gi|408240910|gb|EKI63561.1| poly(A) polymerase I [Escherichia coli EC1735]
gi|408250379|gb|EKI72239.1| poly(A) polymerase I [Escherichia coli EC1736]
gi|408254627|gb|EKI76130.1| poly(A) polymerase I [Escherichia coli EC1737]
gi|408260930|gb|EKI81979.1| poly(A) polymerase I [Escherichia coli EC1846]
gi|408269540|gb|EKI89785.1| poly(A) polymerase I [Escherichia coli EC1847]
gi|408271453|gb|EKI91580.1| poly(A) polymerase I [Escherichia coli EC1848]
gi|408280414|gb|EKI99966.1| poly(A) polymerase I [Escherichia coli EC1849]
gi|408286205|gb|EKJ05133.1| poly(A) polymerase I [Escherichia coli EC1850]
gi|408289557|gb|EKJ08315.1| poly(A) polymerase I [Escherichia coli EC1856]
gi|408301831|gb|EKJ19392.1| poly(A) polymerase I [Escherichia coli EC1862]
gi|408302266|gb|EKJ19801.1| poly(A) polymerase I [Escherichia coli EC1864]
gi|408303260|gb|EKJ20726.1| poly(A) polymerase I [Escherichia coli EC1866]
gi|408319649|gb|EKJ35768.1| poly(A) polymerase I [Escherichia coli EC1868]
gi|408320261|gb|EKJ36364.1| poly(A) polymerase I [Escherichia coli EC1870]
gi|408332501|gb|EKJ47536.1| poly(A) polymerase I [Escherichia coli EC1869]
gi|408338299|gb|EKJ52947.1| poly(A) polymerase I [Escherichia coli NE098]
gi|408351277|gb|EKJ65068.1| poly(A) polymerase I [Escherichia coli FRIK523]
gi|408353669|gb|EKJ67164.1| poly(A) polymerase I [Escherichia coli 0.1304]
gi|408560655|gb|EKK36918.1| poly(A) polymerase [Escherichia coli 5.2239]
gi|408560945|gb|EKK37193.1| poly(A) polymerase [Escherichia coli 3.4870]
gi|408561562|gb|EKK37765.1| poly(A) polymerase [Escherichia coli 6.0172]
gi|408586211|gb|EKK60994.1| poly(A) polymerase [Escherichia coli 8.0586]
gi|408592143|gb|EKK66536.1| poly(A) polymerase [Escherichia coli 8.2524]
gi|408593894|gb|EKK68202.1| poly(A) polymerase [Escherichia coli 10.0833]
gi|408605646|gb|EKK79140.1| poly(A) polymerase [Escherichia coli 10.0869]
gi|408606354|gb|EKK79801.1| poly(A) polymerase [Escherichia coli 8.0416]
gi|408613990|gb|EKK87275.1| poly(A) polymerase [Escherichia coli 88.0221]
gi|408618355|gb|EKK91442.1| poly(A) polymerase [Escherichia coli 10.0821]
gi|427215849|gb|EKV85015.1| poly(A) polymerase [Escherichia coli 88.1042]
gi|427219290|gb|EKV88259.1| poly(A) polymerase [Escherichia coli 89.0511]
gi|427219540|gb|EKV88502.1| poly(A) polymerase [Escherichia coli 88.1467]
gi|427235245|gb|EKW02867.1| poly(A) polymerase [Escherichia coli 90.0039]
gi|427235493|gb|EKW03114.1| poly(A) polymerase [Escherichia coli 90.2281]
gi|427237996|gb|EKW05518.1| poly(A) polymerase [Escherichia coli 90.0091]
gi|427252376|gb|EKW18865.1| poly(A) polymerase [Escherichia coli 93.0056]
gi|427254169|gb|EKW20537.1| poly(A) polymerase [Escherichia coli 93.0055]
gi|427255257|gb|EKW21528.1| poly(A) polymerase [Escherichia coli 94.0618]
gi|427271723|gb|EKW36514.1| poly(A) polymerase [Escherichia coli 95.0943]
gi|427272272|gb|EKW37025.1| poly(A) polymerase [Escherichia coli 95.0183]
gi|427278520|gb|EKW42977.1| poly(A) polymerase [Escherichia coli 95.1288]
gi|427287252|gb|EKW51020.1| poly(A) polymerase [Escherichia coli 96.0428]
gi|427293403|gb|EKW56657.1| poly(A) polymerase [Escherichia coli 96.0427]
gi|427294982|gb|EKW58136.1| poly(A) polymerase [Escherichia coli 96.0939]
gi|427305681|gb|EKW68275.1| poly(A) polymerase [Escherichia coli 97.0003]
gi|427307864|gb|EKW70288.1| poly(A) polymerase [Escherichia coli 96.0932]
gi|427312417|gb|EKW74573.1| poly(A) polymerase [Escherichia coli 96.0107]
gi|427322983|gb|EKW84600.1| poly(A) polymerase [Escherichia coli 97.1742]
gi|427323565|gb|EKW85126.1| poly(A) polymerase [Escherichia coli 97.0007]
gi|427335489|gb|EKW96519.1| poly(A) polymerase [Escherichia coli 99.0713]
gi|427335890|gb|EKW96919.1| poly(A) polymerase [Escherichia coli 99.0678]
gi|427337347|gb|EKW98265.1| poly(A) polymerase [Escherichia coli 99.0672]
gi|429260829|gb|EKY44360.1| poly(A) polymerase [Escherichia coli 96.0109]
gi|429262254|gb|EKY45597.1| poly(A) polymerase [Escherichia coli 97.0010]
gi|430880095|gb|ELC03416.1| Poly(A) polymerase [Escherichia coli KTE4]
gi|430881109|gb|ELC04371.1| Poly(A) polymerase [Escherichia coli KTE5]
gi|430889796|gb|ELC12456.1| Poly(A) polymerase [Escherichia coli KTE10]
gi|430901924|gb|ELC23820.1| Poly(A) polymerase [Escherichia coli KTE15]
gi|430911058|gb|ELC32356.1| Poly(A) polymerase [Escherichia coli KTE16]
gi|430919015|gb|ELC39966.1| Poly(A) polymerase [Escherichia coli KTE25]
gi|430933253|gb|ELC53664.1| Poly(A) polymerase [Escherichia coli KTE28]
gi|430938865|gb|ELC59090.1| Poly(A) polymerase [Escherichia coli KTE39]
gi|430944520|gb|ELC64613.1| Poly(A) polymerase [Escherichia coli KTE44]
gi|430957610|gb|ELC76262.1| Poly(A) polymerase [Escherichia coli KTE187]
gi|430968178|gb|ELC85411.1| Poly(A) polymerase [Escherichia coli KTE188]
gi|430969888|gb|ELC86981.1| Poly(A) polymerase [Escherichia coli KTE189]
gi|430975492|gb|ELC92387.1| Poly(A) polymerase [Escherichia coli KTE193]
gi|430976715|gb|ELC93573.1| Poly(A) polymerase [Escherichia coli KTE191]
gi|430986855|gb|ELD03421.1| Poly(A) polymerase [Escherichia coli KTE201]
gi|431001455|gb|ELD17038.1| Poly(A) polymerase [Escherichia coli KTE206]
gi|431011606|gb|ELD25681.1| Poly(A) polymerase [Escherichia coli KTE210]
gi|431029746|gb|ELD42777.1| Poly(A) polymerase [Escherichia coli KTE214]
gi|431032520|gb|ELD45230.1| Poly(A) polymerase [Escherichia coli KTE220]
gi|431045472|gb|ELD55705.1| Poly(A) polymerase [Escherichia coli KTE224]
gi|431055626|gb|ELD65165.1| Poly(A) polymerase [Escherichia coli KTE230]
gi|431087881|gb|ELD93802.1| Poly(A) polymerase [Escherichia coli KTE47]
gi|431101027|gb|ELE05996.1| Poly(A) polymerase [Escherichia coli KTE51]
gi|431123096|gb|ELE25839.1| Poly(A) polymerase [Escherichia coli KTE57]
gi|431124375|gb|ELE27021.1| Poly(A) polymerase [Escherichia coli KTE58]
gi|431133708|gb|ELE35675.1| Poly(A) polymerase [Escherichia coli KTE60]
gi|431134639|gb|ELE36588.1| Poly(A) polymerase [Escherichia coli KTE62]
gi|431142278|gb|ELE44028.1| Poly(A) polymerase [Escherichia coli KTE67]
gi|431152481|gb|ELE53432.1| Poly(A) polymerase [Escherichia coli KTE72]
gi|431158654|gb|ELE59252.1| Poly(A) polymerase [Escherichia coli KTE75]
gi|431166054|gb|ELE66381.1| Poly(A) polymerase [Escherichia coli KTE77]
gi|431174728|gb|ELE74764.1| Poly(A) polymerase [Escherichia coli KTE81]
gi|431185557|gb|ELE85286.1| Poly(A) polymerase [Escherichia coli KTE86]
gi|431194800|gb|ELE94015.1| Poly(A) polymerase [Escherichia coli KTE87]
gi|431196235|gb|ELE95180.1| Poly(A) polymerase [Escherichia coli KTE93]
gi|431225513|gb|ELF22713.1| Poly(A) polymerase [Escherichia coli KTE143]
gi|431225941|gb|ELF23127.1| Poly(A) polymerase [Escherichia coli KTE156]
gi|431232600|gb|ELF28266.1| Poly(A) polymerase [Escherichia coli KTE161]
gi|431247640|gb|ELF41861.1| Poly(A) polymerase [Escherichia coli KTE169]
gi|431248087|gb|ELF42296.1| Poly(A) polymerase [Escherichia coli KTE171]
gi|431260376|gb|ELF52474.1| Poly(A) polymerase [Escherichia coli KTE8]
gi|431268954|gb|ELF60315.1| Poly(A) polymerase [Escherichia coli KTE17]
gi|431277399|gb|ELF68413.1| Poly(A) polymerase [Escherichia coli KTE18]
gi|431278880|gb|ELF69853.1| Poly(A) polymerase [Escherichia coli KTE45]
gi|431287291|gb|ELF78109.1| Poly(A) polymerase [Escherichia coli KTE23]
gi|431287878|gb|ELF78664.1| Poly(A) polymerase [Escherichia coli KTE42]
gi|431291628|gb|ELF82131.1| Poly(A) polymerase [Escherichia coli KTE29]
gi|431296443|gb|ELF86155.1| Poly(A) polymerase [Escherichia coli KTE43]
gi|431297560|gb|ELF87210.1| Poly(A) polymerase [Escherichia coli KTE22]
gi|431302369|gb|ELF91555.1| Poly(A) polymerase [Escherichia coli KTE46]
gi|431331662|gb|ELG18908.1| Poly(A) polymerase [Escherichia coli KTE59]
gi|431332925|gb|ELG20146.1| Poly(A) polymerase [Escherichia coli KTE63]
gi|431333740|gb|ELG20925.1| Poly(A) polymerase [Escherichia coli KTE65]
gi|431351367|gb|ELG38154.1| Poly(A) polymerase [Escherichia coli KTE84]
gi|431352000|gb|ELG38786.1| Poly(A) polymerase [Escherichia coli KTE91]
gi|431371254|gb|ELG57039.1| Poly(A) polymerase [Escherichia coli KTE118]
gi|431375008|gb|ELG60352.1| Poly(A) polymerase [Escherichia coli KTE123]
gi|431380784|gb|ELG65423.1| Poly(A) polymerase [Escherichia coli KTE135]
gi|431398173|gb|ELG81596.1| Poly(A) polymerase [Escherichia coli KTE141]
gi|431408691|gb|ELG91874.1| Poly(A) polymerase [Escherichia coli KTE146]
gi|431426137|gb|ELH08182.1| Poly(A) polymerase [Escherichia coli KTE165]
gi|431430960|gb|ELH12739.1| Poly(A) polymerase [Escherichia coli KTE192]
gi|431438574|gb|ELH19948.1| Poly(A) polymerase [Escherichia coli KTE194]
gi|431456440|gb|ELH36784.1| Poly(A) polymerase [Escherichia coli KTE183]
gi|431457414|gb|ELH37753.1| Poly(A) polymerase [Escherichia coli KTE184]
gi|431464640|gb|ELH44759.1| Poly(A) polymerase [Escherichia coli KTE196]
gi|431472525|gb|ELH52413.1| Poly(A) polymerase [Escherichia coli KTE197]
gi|431475646|gb|ELH55450.1| Poly(A) polymerase [Escherichia coli KTE203]
gi|431483807|gb|ELH63496.1| Poly(A) polymerase [Escherichia coli KTE209]
gi|431487723|gb|ELH67367.1| Poly(A) polymerase [Escherichia coli KTE207]
gi|431499985|gb|ELH79002.1| Poly(A) polymerase [Escherichia coli KTE217]
gi|431507933|gb|ELH86215.1| Poly(A) polymerase [Escherichia coli KTE215]
gi|431511639|gb|ELH89770.1| Poly(A) polymerase [Escherichia coli KTE218]
gi|431516130|gb|ELH93744.1| Poly(A) polymerase [Escherichia coli KTE223]
gi|431518637|gb|ELH96091.1| Poly(A) polymerase [Escherichia coli KTE227]
gi|431519105|gb|ELH96557.1| Poly(A) polymerase [Escherichia coli KTE229]
gi|431527940|gb|ELI04654.1| Poly(A) polymerase [Escherichia coli KTE106]
gi|431536887|gb|ELI13043.1| Poly(A) polymerase [Escherichia coli KTE104]
gi|431546880|gb|ELI21267.1| Poly(A) polymerase [Escherichia coli KTE109]
gi|431557178|gb|ELI30952.1| Poly(A) polymerase [Escherichia coli KTE113]
gi|431561284|gb|ELI34668.1| Poly(A) polymerase [Escherichia coli KTE117]
gi|431561485|gb|ELI34854.1| Poly(A) polymerase [Escherichia coli KTE112]
gi|431574037|gb|ELI46822.1| Poly(A) polymerase [Escherichia coli KTE120]
gi|431575410|gb|ELI48145.1| Poly(A) polymerase [Escherichia coli KTE124]
gi|431603297|gb|ELI72723.1| Poly(A) polymerase [Escherichia coli KTE131]
gi|431607301|gb|ELI76671.1| Poly(A) polymerase [Escherichia coli KTE133]
gi|431610699|gb|ELI79984.1| Poly(A) polymerase [Escherichia coli KTE137]
gi|431624006|gb|ELI92630.1| Poly(A) polymerase [Escherichia coli KTE145]
gi|431633482|gb|ELJ01762.1| Poly(A) polymerase [Escherichia coli KTE150]
gi|431637608|gb|ELJ05663.1| Poly(A) polymerase [Escherichia coli KTE153]
gi|431650444|gb|ELJ17765.1| Poly(A) polymerase [Escherichia coli KTE157]
gi|431650954|gb|ELJ18261.1| Poly(A) polymerase [Escherichia coli KTE160]
gi|431665844|gb|ELJ32553.1| Poly(A) polymerase [Escherichia coli KTE167]
gi|431668023|gb|ELJ34599.1| Poly(A) polymerase [Escherichia coli KTE168]
gi|431679094|gb|ELJ45010.1| Poly(A) polymerase [Escherichia coli KTE176]
gi|431679226|gb|ELJ45139.1| Poly(A) polymerase [Escherichia coli KTE174]
gi|431693317|gb|ELJ58733.1| Poly(A) polymerase [Escherichia coli KTE179]
gi|431695126|gb|ELJ60462.1| Poly(A) polymerase [Escherichia coli KTE180]
gi|431699535|gb|ELJ64540.1| Poly(A) polymerase [Escherichia coli KTE88]
gi|431723755|gb|ELJ87700.1| Poly(A) polymerase [Escherichia coli KTE90]
gi|431726612|gb|ELJ90420.1| Poly(A) polymerase [Escherichia coli KTE94]
gi|431733913|gb|ELJ97316.1| Poly(A) polymerase [Escherichia coli KTE97]
gi|431736486|gb|ELJ99811.1| Poly(A) polymerase [Escherichia coli KTE99]
gi|441605865|emb|CCP97243.1| Poly(A) polymerase [Escherichia coli O10:K5(L):H4 str. ATCC 23506]
gi|441711466|emb|CCQ08080.1| Poly(A) polymerase [Escherichia coli Nissle 1917]
gi|444543468|gb|ELV22730.1| poly(A) polymerase [Escherichia coli 99.0814]
gi|444552171|gb|ELV30014.1| poly(A) polymerase [Escherichia coli 09BKT078844]
gi|444552561|gb|ELV30348.1| poly(A) polymerase [Escherichia coli 99.0815]
gi|444566167|gb|ELV43003.1| poly(A) polymerase [Escherichia coli 99.0839]
gi|444568441|gb|ELV45116.1| poly(A) polymerase [Escherichia coli 99.0816]
gi|444572991|gb|ELV49392.1| poly(A) polymerase [Escherichia coli 99.0848]
gi|444583631|gb|ELV59327.1| poly(A) polymerase [Escherichia coli 99.1753]
gi|444586644|gb|ELV62134.1| poly(A) polymerase [Escherichia coli 99.1775]
gi|444587255|gb|ELV62725.1| poly(A) polymerase [Escherichia coli 99.1793]
gi|444601086|gb|ELV75895.1| poly(A) polymerase [Escherichia coli ATCC 700728]
gi|444601417|gb|ELV76224.1| poly(A) polymerase [Escherichia coli PA11]
gi|444610027|gb|ELV84463.1| poly(A) polymerase [Escherichia coli 99.1805]
gi|444616149|gb|ELV90319.1| poly(A) polymerase [Escherichia coli PA13]
gi|444616557|gb|ELV90719.1| poly(A) polymerase [Escherichia coli PA19]
gi|444625192|gb|ELV99063.1| poly(A) polymerase [Escherichia coli PA2]
gi|444633736|gb|ELW07239.1| poly(A) polymerase [Escherichia coli PA48]
gi|444634060|gb|ELW07551.1| poly(A) polymerase [Escherichia coli PA47]
gi|444639362|gb|ELW12681.1| poly(A) polymerase [Escherichia coli PA8]
gi|444649158|gb|ELW22064.1| poly(A) polymerase [Escherichia coli 7.1982]
gi|444651319|gb|ELW24128.1| poly(A) polymerase [Escherichia coli 99.1781]
gi|444655346|gb|ELW27965.1| poly(A) polymerase [Escherichia coli 99.1762]
gi|444664524|gb|ELW36712.1| poly(A) polymerase [Escherichia coli PA35]
gi|444668807|gb|ELW40807.1| poly(A) polymerase [Escherichia coli 3.4880]
gi|444673706|gb|ELW45332.1| poly(A) polymerase [Escherichia coli 95.0083]
gi|444675148|gb|ELW46629.1| poly(A) polymerase [Escherichia coli 99.0670]
Length = 454
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|429090362|ref|ZP_19153094.1| Poly(A) polymerase [Cronobacter universalis NCTC 9529]
gi|426510165|emb|CCK18206.1| Poly(A) polymerase [Cronobacter universalis NCTC 9529]
Length = 448
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 55 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEESVS 114
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG+ D
Sbjct: 115 DRATSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGLND 168
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ + ++ + T ++ED R+LRA+R AARL R S ET + L+ + + RL
Sbjct: 169 LNEGIIRLIGDPETRYREDPVRMLRAVRFAARLDMRISSETGEPIPRLATLLNDVPPARL 228
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G A+ RLL ++ L + L P + Y + G
Sbjct: 229 FEESLKLLQTGYGYATYRLLCEYNLFQPLFPGISRYFTEKG 269
>gi|387120137|ref|YP_006286020.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|416045226|ref|ZP_11575294.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|429732809|ref|ZP_19267390.1| polynucleotide adenylyltransferase [Aggregatibacter
actinomycetemcomitans Y4]
gi|347995615|gb|EGY36780.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|385874629|gb|AFI86188.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429155351|gb|EKX98033.1| polynucleotide adenylyltransferase [Aggregatibacter
actinomycetemcomitans Y4]
Length = 488
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ +F QC +VG+RF + HV F I+EV++F +G
Sbjct: 94 LLGKKPKDFDVATNARPEQIQAIFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHAEH 152
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GI+D++ K
Sbjct: 153 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLRDYFNGIDDLKNGK 212
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 213 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESL 272
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L GS + RLL ++GL E L P+ Y + R ++L ++ D+ +A
Sbjct: 273 KLLQGGSGVKTYRLLRQYGLFEQLFPLLQNYFTE---REDSMAEKMILRALTSTDERVAD 329
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 330 KLPINPAFLFA 340
>gi|419304649|ref|ZP_13846566.1| poly(A) polymerase [Escherichia coli DEC11D]
gi|378154303|gb|EHX15379.1| poly(A) polymerase [Escherichia coli DEC11D]
Length = 354
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|91209212|ref|YP_539198.1| poly(A) polymerase [Escherichia coli UTI89]
gi|91070786|gb|ABE05667.1| poly(A) polymerase [Escherichia coli UTI89]
Length = 472
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|387615492|ref|YP_006118514.1| poly(A) polymerase I [Escherichia coli O83:H1 str. NRG 857C]
gi|312944753|gb|ADR25580.1| poly(A) polymerase I [Escherichia coli O83:H1 str. NRG 857C]
Length = 472
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|25497051|pir||C85498 poly(A) polymerase I [imported] - Escherichia coli (strain O157:H7,
substrain EDL933)
gi|12512861|gb|AAG54447.1|AE005190_9 poly(A) polymerase I [Escherichia coli O157:H7 str. EDL933]
Length = 454
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|416069817|ref|ZP_11583413.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|347999570|gb|EGY40391.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 432
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ +F QC +VG+RF + HV F I+EV++F +G
Sbjct: 38 LLGKKPKDFDVATNARPEQIQAIFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHAEH 96
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GI+D++ K
Sbjct: 97 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDYFNGIDDLKNGK 156
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 157 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPSARLFEESL 216
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L GS + RLL ++GL E L P+ Y + R ++L ++ D+ +A
Sbjct: 217 KLLQGGSGVKTYRLLRQYGLFEQLFPLLQNYFTE---REDSMAEKMILRALTSTDERVAD 273
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 274 KLPINPAFLFA 284
>gi|145639648|ref|ZP_01795251.1| polyA polymerase [Haemophilus influenzae PittII]
gi|145271205|gb|EDK11119.1| polyA polymerase [Haemophilus influenzae PittII]
gi|309750618|gb|ADO80602.1| Poly(A) polymerase I [Haemophilus influenzae R2866]
Length = 452
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 15/219 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPI------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
K E + G E+D +R RDFT+N L ++P + DY GI+D
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAVR------RDFTVNALYYNPQDNTLRDYFEGIKD 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + T +QED R+LR+IR A+L + + + L+P + + RL
Sbjct: 175 LKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPISELAPLLKNIPPARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + RLL ++GL E L P + Y +
Sbjct: 235 FDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSPYFTE 273
>gi|433181585|ref|ZP_20365897.1| Poly(A) polymerase [Escherichia coli KTE85]
gi|431712732|gb|ELJ77010.1| Poly(A) polymerase [Escherichia coli KTE85]
Length = 454
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|331645278|ref|ZP_08346389.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M605]
gi|344915212|ref|NP_706091.4| poly(A) polymerase [Shigella flexneri 2a str. 301]
gi|386617648|ref|YP_006137228.1| Poly(A) polymerase [Escherichia coli NA114]
gi|387828209|ref|YP_003348146.1| poly(A) polymerase [Escherichia coli SE15]
gi|417660772|ref|ZP_12310353.1| polyA polymerase [Escherichia coli AA86]
gi|417699928|ref|ZP_12349076.1| poly(A) polymerase family protein [Shigella flexneri K-218]
gi|417705634|ref|ZP_12354709.1| poly(A) polymerase family protein [Shigella flexneri VA-6]
gi|417720891|ref|ZP_12369746.1| poly(A) polymerase family protein [Shigella flexneri K-304]
gi|417726486|ref|ZP_12375236.1| poly(A) polymerase family protein [Shigella flexneri K-671]
gi|417731603|ref|ZP_12380278.1| poly(A) polymerase family protein [Shigella flexneri 2747-71]
gi|417736973|ref|ZP_12385586.1| poly(A) polymerase family protein [Shigella flexneri 4343-70]
gi|417741625|ref|ZP_12390182.1| poly(A) polymerase I [Shigella flexneri 2930-71]
gi|417826030|ref|ZP_12472613.1| poly(A) polymerase I [Shigella flexneri J1713]
gi|418252834|ref|ZP_12878301.1| poly(A) polymerase I [Shigella flexneri 6603-63]
gi|420318615|ref|ZP_14820475.1| poly(A) polymerase [Shigella flexneri 2850-71]
gi|420339612|ref|ZP_14841150.1| poly(A) polymerase [Shigella flexneri K-404]
gi|420369703|ref|ZP_14870386.1| poly(A) polymerase [Shigella flexneri 1235-66]
gi|432420264|ref|ZP_19662823.1| Poly(A) polymerase [Escherichia coli KTE178]
gi|432498440|ref|ZP_19740221.1| Poly(A) polymerase [Escherichia coli KTE216]
gi|432557171|ref|ZP_19793865.1| Poly(A) polymerase [Escherichia coli KTE49]
gi|432692828|ref|ZP_19928048.1| Poly(A) polymerase [Escherichia coli KTE162]
gi|432708986|ref|ZP_19944055.1| Poly(A) polymerase [Escherichia coli KTE6]
gi|432917128|ref|ZP_20121799.1| Poly(A) polymerase [Escherichia coli KTE173]
gi|432924423|ref|ZP_20126710.1| Poly(A) polymerase [Escherichia coli KTE175]
gi|432979528|ref|ZP_20168316.1| Poly(A) polymerase [Escherichia coli KTE211]
gi|433095021|ref|ZP_20281247.1| Poly(A) polymerase [Escherichia coli KTE139]
gi|433104324|ref|ZP_20290349.1| Poly(A) polymerase [Escherichia coli KTE148]
gi|30039945|gb|AAP15679.1| poly(A) polymerase I [Shigella flexneri 2a str. 2457T]
gi|56383162|gb|AAN41798.2| poly(A) polymerase I [Shigella flexneri 2a str. 301]
gi|281177366|dbj|BAI53696.1| poly(A) polymerase [Escherichia coli SE15]
gi|330909990|gb|EGH38500.1| polyA polymerase [Escherichia coli AA86]
gi|331046035|gb|EGI18154.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli M605]
gi|332762142|gb|EGJ92411.1| poly(A) polymerase family protein [Shigella flexneri 4343-70]
gi|332762374|gb|EGJ92641.1| poly(A) polymerase family protein [Shigella flexneri 2747-71]
gi|332764987|gb|EGJ95215.1| poly(A) polymerase family protein [Shigella flexneri K-671]
gi|332768930|gb|EGJ99109.1| poly(A) polymerase I [Shigella flexneri 2930-71]
gi|333009186|gb|EGK28642.1| poly(A) polymerase family protein [Shigella flexneri K-218]
gi|333010635|gb|EGK30068.1| poly(A) polymerase family protein [Shigella flexneri VA-6]
gi|333022260|gb|EGK41498.1| poly(A) polymerase family protein [Shigella flexneri K-304]
gi|333968149|gb|AEG34954.1| Poly(A) polymerase [Escherichia coli NA114]
gi|335578410|gb|EGM63626.1| poly(A) polymerase I [Shigella flexneri J1713]
gi|391255458|gb|EIQ14606.1| poly(A) polymerase [Shigella flexneri 2850-71]
gi|391275514|gb|EIQ34303.1| poly(A) polymerase [Shigella flexneri K-404]
gi|391320987|gb|EIQ77752.1| poly(A) polymerase [Shigella flexneri 1235-66]
gi|397902102|gb|EJL18434.1| poly(A) polymerase I [Shigella flexneri 6603-63]
gi|430947852|gb|ELC67540.1| Poly(A) polymerase [Escherichia coli KTE178]
gi|431032885|gb|ELD45591.1| Poly(A) polymerase [Escherichia coli KTE216]
gi|431094789|gb|ELE00418.1| Poly(A) polymerase [Escherichia coli KTE49]
gi|431237848|gb|ELF32830.1| Poly(A) polymerase [Escherichia coli KTE162]
gi|431252707|gb|ELF46221.1| Poly(A) polymerase [Escherichia coli KTE6]
gi|431448413|gb|ELH29130.1| Poly(A) polymerase [Escherichia coli KTE173]
gi|431450064|gb|ELH30556.1| Poly(A) polymerase [Escherichia coli KTE175]
gi|431498478|gb|ELH77664.1| Poly(A) polymerase [Escherichia coli KTE211]
gi|431620759|gb|ELI89586.1| Poly(A) polymerase [Escherichia coli KTE139]
gi|431634768|gb|ELJ02989.1| Poly(A) polymerase [Escherichia coli KTE148]
Length = 454
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|416107619|ref|ZP_11590586.1| LOW QUALITY PROTEIN: polyA polymerase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348005168|gb|EGY45657.1| LOW QUALITY PROTEIN: polyA polymerase [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 297
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ VF QC +VG+RF + HV F I+EV++F +G
Sbjct: 38 LLGKKPKDFDVATNARPEQIQAVFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHMEH 96
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GI+D++ K
Sbjct: 97 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLRDYFNGIDDLKNGK 156
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 157 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESL 216
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L GS + RLL ++GL E L P+ Y + R ++L ++ D+ +A
Sbjct: 217 KLLQGGSGVKTYRLLRQYGLFEQLFPLLQNYFTE---REDSMAEKMILRALTSTDERVAD 273
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 274 KLPINPAFLFA 284
>gi|386627663|ref|YP_006147383.1| poly(A) polymerase I [Escherichia coli str. 'clone D i2']
gi|386632583|ref|YP_006152302.1| poly(A) polymerase I [Escherichia coli str. 'clone D i14']
gi|355418562|gb|AER82759.1| poly(A) polymerase I [Escherichia coli str. 'clone D i2']
gi|355423482|gb|AER87678.1| poly(A) polymerase I [Escherichia coli str. 'clone D i14']
Length = 472
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|161950166|ref|YP_401882.2| poly(A) polymerase [Shigella dysenteriae Sd197]
Length = 472
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|161367653|ref|NP_285839.2| poly(A) polymerase [Escherichia coli O157:H7 str. EDL933]
Length = 472
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|346724712|ref|YP_004851381.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346649459|gb|AEO42083.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 455
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 14/249 (5%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATDATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 186 GDPELRYQEDPVRMLRAVRLAAKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L ++GLL VL P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVASFEGLERYGLLGVLFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL 249
+ A+L
Sbjct: 303 SPAFLFALL 311
>gi|119478378|ref|ZP_01618386.1| poly(A) polymerase [marine gamma proteobacterium HTCC2143]
gi|119448587|gb|EAW29833.1| poly(A) polymerase [marine gamma proteobacterium HTCC2143]
Length = 462
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 118/243 (48%), Gaps = 30/243 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFDI T A ++V ++F I+G+RF I HV F I+EV++F
Sbjct: 73 LLGGRPKDFDIATDATPEQVRKLFHNSRIIGRRFKIVHVRFGREIIEVTTFRGTHEQVEQ 132
Query: 52 STSGRRFSRDFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYD 104
S G+R + + + G E+D +R RDFTIN L + +YD
Sbjct: 133 SPKGKRPQNQNSAQSKNGMLLRDNVFGTVEEDAVR------RDFTINALYYTTADFAVYD 186
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
Y G+ D+ + ++ + T ++ED R+LRA+R AA+L F + TA + L+PS+
Sbjct: 187 YTSGLRDLDEKIIRIIGDPETRYREDPVRMLRAVRFAAKLNFTIEKNTAKPILRLAPSLA 246
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP--------IQAAYLVKHGFRRR 216
+ R+ E+ +L G +L+ ++GL E L P QA LV+ +
Sbjct: 247 DIPAARMFDEVLKLLMSGYGADVYKLMQQYGLFEPLFPQTQPCLQQPQANILVEQAIKNT 306
Query: 217 DKR 219
D R
Sbjct: 307 DAR 309
>gi|26246087|ref|NP_752126.1| poly(A) polymerase I [Escherichia coli CFT073]
gi|82542743|ref|YP_406690.1| poly(A) polymerase I [Shigella boydii Sb227]
gi|110640364|ref|YP_668092.1| poly(A) polymerase [Escherichia coli 536]
gi|161986592|ref|YP_309183.2| poly(A) polymerase [Shigella sonnei Ss046]
gi|162139816|ref|NP_308174.2| poly(A) polymerase [Escherichia coli O157:H7 str. Sakai]
gi|209917334|ref|YP_002291418.1| poly(A) polymerase I [Escherichia coli SE11]
gi|218557086|ref|YP_002389999.1| poly(A) polymerase I [Escherichia coli S88]
gi|218688020|ref|YP_002396232.1| poly(A) polymerase I [Escherichia coli ED1a]
gi|218698564|ref|YP_002406193.1| poly(A) polymerase I [Escherichia coli IAI39]
gi|237704302|ref|ZP_04534783.1| poly(A) polymerase I [Escherichia sp. 3_2_53FAA]
gi|291280967|ref|YP_003497785.1| poly(A) polymerase [Escherichia coli O55:H7 str. CB9615]
gi|306815256|ref|ZP_07449405.1| poly(A) polymerase I [Escherichia coli NC101]
gi|383176748|ref|YP_005454753.1| poly(A) polymerase I [Shigella sonnei 53G]
gi|386637504|ref|YP_006104302.1| poly(A) polymerase [Escherichia coli ABU 83972]
gi|387505072|ref|YP_006157328.1| poly(A) polymerase I [Escherichia coli O55:H7 str. RM12579]
gi|387610616|ref|YP_006113732.1| poly(A) polymerase [Escherichia coli ETEC H10407]
gi|387880703|ref|YP_006311005.1| poly(A) polymerase I [Escherichia coli Xuzhou21]
gi|417944210|ref|ZP_12587454.1| poly(A) polymerase I [Escherichia coli XH140A]
gi|417975948|ref|ZP_12616744.1| poly(A) polymerase I [Escherichia coli XH001]
gi|419699072|ref|ZP_14226695.1| poly(A) polymerase I [Escherichia coli SCI-07]
gi|419811488|ref|ZP_14336362.1| poly(A) polymerase I [Escherichia coli O32:H37 str. P4]
gi|419865460|ref|ZP_14387843.1| poly(A) polymerase I [Escherichia coli O103:H25 str. CVM9340]
gi|419871628|ref|ZP_14393681.1| poly(A) polymerase I [Escherichia coli O103:H2 str. CVM9450]
gi|433325029|ref|ZP_20402246.1| poly(A) polymerase I [Escherichia coli J96]
gi|450185080|ref|ZP_21888927.1| poly(A) polymerase I [Escherichia coli SEPT362]
gi|450238161|ref|ZP_21898838.1| poly(A) polymerase I [Escherichia coli S17]
gi|26106484|gb|AAN78670.1|AE016755_170 Poly(A) polymerase [Escherichia coli CFT073]
gi|81244154|gb|ABB64862.1| poly(A) polymerase I [Shigella boydii Sb227]
gi|110341956|gb|ABG68193.1| poly(A) polymerase [Escherichia coli 536]
gi|209910593|dbj|BAG75667.1| poly(A) polymerase [Escherichia coli SE11]
gi|218363855|emb|CAR01518.1| poly(A) polymerase I [Escherichia coli S88]
gi|218368550|emb|CAR16287.1| poly(A) polymerase I [Escherichia coli IAI39]
gi|218425584|emb|CAR06370.1| poly(A) polymerase I [Escherichia coli ED1a]
gi|226902214|gb|EEH88473.1| poly(A) polymerase I [Escherichia sp. 3_2_53FAA]
gi|290760840|gb|ADD54801.1| Poly(A) polymerase [Escherichia coli O55:H7 str. CB9615]
gi|305850918|gb|EFM51373.1| poly(A) polymerase I [Escherichia coli NC101]
gi|307551996|gb|ADN44771.1| poly(A) polymerase [Escherichia coli ABU 83972]
gi|309700352|emb|CBI99640.1| poly(A) polymerase [Escherichia coli ETEC H10407]
gi|342364038|gb|EGU28141.1| poly(A) polymerase I [Escherichia coli XH140A]
gi|344194346|gb|EGV48420.1| poly(A) polymerase I [Escherichia coli XH001]
gi|374357066|gb|AEZ38773.1| poly(A) polymerase I [Escherichia coli O55:H7 str. RM12579]
gi|380349714|gb|EIA37979.1| poly(A) polymerase I [Escherichia coli SCI-07]
gi|385155532|gb|EIF17534.1| poly(A) polymerase I [Escherichia coli O32:H37 str. P4]
gi|386794161|gb|AFJ27195.1| poly(A) polymerase I [Escherichia coli Xuzhou21]
gi|388336746|gb|EIL03275.1| poly(A) polymerase I [Escherichia coli O103:H2 str. CVM9450]
gi|388337613|gb|EIL04112.1| poly(A) polymerase I [Escherichia coli O103:H25 str. CVM9340]
gi|432346578|gb|ELL41059.1| poly(A) polymerase I [Escherichia coli J96]
gi|449325350|gb|EMD15257.1| poly(A) polymerase I [Escherichia coli SEPT362]
gi|449325836|gb|EMD15734.1| poly(A) polymerase I [Escherichia coli S17]
Length = 472
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|452877918|ref|ZP_21955164.1| poly(A) polymerase, partial [Pseudomonas aeruginosa VRFPA01]
gi|452185397|gb|EME12415.1| poly(A) polymerase, partial [Pseudomonas aeruginosa VRFPA01]
Length = 452
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 145/334 (43%), Gaps = 59/334 (17%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGIAPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHPEGQD 126
Query: 52 -------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYD 104
S R RD Y G E D R RDFTIN L FD ++ + D
Sbjct: 127 DGDSRASSNESGRILRDNVY------GSLEDDAQR------RDFTINALYFDVTSERLLD 174
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
Y G+ DIR ++ + + ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 YAHGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKLDFEIEKHSAAPIRRLAPLLR 234
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL 224
++ RL E+ + G AE + LL ++ L L P A L + D L+
Sbjct: 235 EIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFPASAKALQANP----DYTGKLIR 290
Query: 225 SLFSNLDKLLAPDRPCHSS------LWIAIL-------------------AFHKALSDQP 259
+N D + +P + LW A+ A H+ +S+Q
Sbjct: 291 QALANTDARIRQGKPVTPAFLFAALLWPALPARVAQLQEKGMPAIPAMQEAAHELISEQC 350
Query: 260 RDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHD 293
+ + F+L + DM E ++ RR K D
Sbjct: 351 QRIAIPKRFTLPIREIWDMQE--RLPRRQGKRAD 382
>gi|386703342|ref|YP_006167189.1| Poly(A) polymerase [Escherichia coli P12b]
gi|383101510|gb|AFG39019.1| Poly(A) polymerase [Escherichia coli P12b]
Length = 414
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 22 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNIS 81
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 82 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 135
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 136 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 195
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 196 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 236
>gi|417246538|ref|ZP_12039639.1| polynucleotide adenylyltransferase [Escherichia coli 9.0111]
gi|386209166|gb|EII19653.1| polynucleotide adenylyltransferase [Escherichia coli 9.0111]
Length = 454
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVVDFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|3650360|emb|CAA77045.1| polynucleotide adenylyltransferase [Pseudomonas putida]
Length = 463
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 70 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQ 129
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 130 GDAHRSSHNASGR-ILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 176
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 177 DYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTYLPIRGLAPML 236
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G + +L L E L P A H R ++ L
Sbjct: 237 REIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASA-----HALDERPTYTHTL 291
Query: 224 LS-LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+S +N D + +P + LW A+ A L +Q P+
Sbjct: 292 ISQALNNTDLRVKQGKPVTPAFLFAALLWPALPARVLHLQNQGVPPI 338
>gi|398875515|ref|ZP_10630687.1| poly(A) polymerase [Pseudomonas sp. GM67]
gi|398886155|ref|ZP_10641044.1| poly(A) polymerase [Pseudomonas sp. GM60]
gi|398190527|gb|EJM77749.1| poly(A) polymerase [Pseudomonas sp. GM60]
gi|398207121|gb|EJM93876.1| poly(A) polymerase [Pseudomonas sp. GM67]
Length = 466
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSALPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|161486546|ref|NP_835874.2| poly(A) polymerase I [Shigella flexneri 2a str. 2457T]
gi|384541715|ref|YP_005725776.1| poly(A) polymerase I [Shigella flexneri 2002017]
gi|281599499|gb|ADA72483.1| poly(A) polymerase I [Shigella flexneri 2002017]
Length = 472
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|421890873|ref|ZP_16321714.1| poly(A) polymerase I [Ralstonia solanacearum K60-1]
gi|378963783|emb|CCF98462.1| poly(A) polymerase I [Ralstonia solanacearum K60-1]
Length = 516
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 149/330 (45%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 95 LLGIKPKDFDVATNATPEQVQALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 154
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 155 AVESEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 213
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ +YDY G+ED+R ++ + T ++ED R+LRA+R AA+ GF T +
Sbjct: 214 DQTVYDYHRGMEDMRARLLRMIGDPHTRYREDPVRMLRAVRFAAKTGFGIEPATRAPIAE 273
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + R
Sbjct: 274 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGER--- 330
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D+ + +P A L +H L R +PL+ A+ +
Sbjct: 331 ---FVQLALDNTDERVKAGKPVSPGFLFASLLWHHVLEHWNRRRAAGEPLIPALHTAMDE 387
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 388 VLDRQTEQLAIQRRFTADMKEIWS--MQPR 415
>gi|170021503|ref|YP_001726457.1| poly(A) polymerase I [Escherichia coli ATCC 8739]
gi|251783703|ref|YP_002998007.1| poly(A) polymerase I [Escherichia coli BL21(DE3)]
gi|169756431|gb|ACA79130.1| poly(A) polymerase [Escherichia coli ATCC 8739]
gi|242375976|emb|CAQ30658.1| poly(A) polymerase I [Escherichia coli BL21(DE3)]
Length = 465
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 73 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNIS 132
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 133 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 186
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 187 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 246
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 247 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 287
>gi|152983716|ref|YP_001350768.1| poly(A) polymerase [Pseudomonas aeruginosa PA7]
gi|150958874|gb|ABR80899.1| poly(A) polymerase [Pseudomonas aeruginosa PA7]
Length = 467
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 145/334 (43%), Gaps = 59/334 (17%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGIAPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHPEGQD 126
Query: 52 -------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYD 104
S R RD Y G E D R RDFTIN L FD ++ + D
Sbjct: 127 DGDSRASSNESGRILRDNVY------GSLEDDAQR------RDFTINALYFDVTSERLLD 174
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
Y G+ DIR ++ + + ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 YAHGVHDIRNRLIRLIGDPEQRYLEDPVRMLRAVRFAAKLDFEIEKHSAAPIRRLAPLLR 234
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL 224
++ RL E+ + G AE + LL ++ L L P A L + D L+
Sbjct: 235 EIPSARLFDEVLKLFLAGRAERTFELLVEYELFAPLFPASAKALQANP----DYTGRLIR 290
Query: 225 SLFSNLDKLLAPDRPCHSS------LWIAIL-------------------AFHKALSDQP 259
+N D + +P + LW A+ A H+ +S+Q
Sbjct: 291 QALANTDARIRQGKPVTPAFLFAALLWPALPARVAQLQEKGMPAIPAMQEAAHELISEQC 350
Query: 260 RDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHD 293
+ + F+L + DM E ++ RR K D
Sbjct: 351 QRIAIPKRFTLPIREIWDMQE--RLPRRQGKRAD 382
>gi|432677740|ref|ZP_19913170.1| Poly(A) polymerase [Escherichia coli KTE142]
gi|431207922|gb|ELF06152.1| Poly(A) polymerase [Escherichia coli KTE142]
Length = 454
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|300919704|ref|ZP_07136192.1| polynucleotide adenylyltransferase [Escherichia coli MS 115-1]
gi|432532356|ref|ZP_19769364.1| Poly(A) polymerase [Escherichia coli KTE234]
gi|300413238|gb|EFJ96548.1| polynucleotide adenylyltransferase [Escherichia coli MS 115-1]
gi|431064837|gb|ELD73695.1| Poly(A) polymerase [Escherichia coli KTE234]
Length = 454
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNIS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|157960524|ref|YP_001500558.1| poly(A) polymerase [Shewanella pealeana ATCC 700345]
gi|157845524|gb|ABV86023.1| poly(A) polymerase [Shewanella pealeana ATCC 700345]
Length = 434
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 152/309 (49%), Gaps = 36/309 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST----SGR 56
+L PKDFD++T+A +E+ R+F C +VG+RF + H+ F ++EV++ SG
Sbjct: 42 LLGLQPKDFDVVTNATPEEIKRLFRNCRLVGRRFRLAHIVFGRDVIEVATLRGHHVDSGE 101
Query: 57 RFS---------RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIG 107
+ S RD Y G ++D R RDFT+N L +D I+ Y G
Sbjct: 102 KISKTNESGRLLRDNVY------GSIDEDAER------RDFTVNALYYDISDFSIHSYGG 149
Query: 108 GIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLD 167
G++D+ ++ + T ++ED R+LRA+R A +LG + A ++ L+ + +
Sbjct: 150 GLQDLESRTIRLIGDPETRYREDPVRMLRAVRFATKLGMSIEPKAAEPIQGLAHLLKDIP 209
Query: 168 RGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF 227
R+ E+ + G A + ++ +FGL E L P A L ++ + + LL +
Sbjct: 210 AARMYEEVLKLFFAGKALENYHMMREFGLFEPLFPQLEALLKEYP---NGETAKLLQEMM 266
Query: 228 SNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRD-PLVVAVFSLAVYNG--GDMLE---- 280
+N D+ +A D+P + + A L ++ LS + D L + S YN GD++E
Sbjct: 267 ANTDERVAQDKPVTPAFFYAALLWY-PLSQRADDIALESGLSSYDAYNAAMGDVMEQQCR 325
Query: 281 AVKIARRIN 289
+ + RR +
Sbjct: 326 TISVPRRFS 334
>gi|193067681|ref|ZP_03048648.1| poly(A) polymerase [Escherichia coli E110019]
gi|192959093|gb|EDV89529.1| poly(A) polymerase [Escherichia coli E110019]
Length = 454
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|237802072|ref|ZP_04590533.1| poly(A) polymerase [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331024928|gb|EGI04984.1| poly(A) polymerase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 467
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 135/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A + L+P +
Sbjct: 176 DYANGVHDIRNKLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSAQPISALAPML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A + +L L + L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGYAAPTFEMLVDLELFDPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQDAAH 345
>gi|432390038|ref|ZP_19632904.1| Poly(A) polymerase [Escherichia coli KTE21]
gi|432717157|ref|ZP_19952161.1| Poly(A) polymerase [Escherichia coli KTE9]
gi|430923651|gb|ELC44386.1| Poly(A) polymerase [Escherichia coli KTE21]
gi|431267278|gb|ELF58796.1| Poly(A) polymerase [Escherichia coli KTE9]
Length = 454
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNIS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|194439099|ref|ZP_03071181.1| poly(A) polymerase [Escherichia coli 101-1]
gi|254160263|ref|YP_003043371.1| poly(A) polymerase I [Escherichia coli B str. REL606]
gi|254287066|ref|YP_003052814.1| poly(A) polymerase I [Escherichia coli BL21(DE3)]
gi|297520614|ref|ZP_06939000.1| poly(A) polymerase I [Escherichia coli OP50]
gi|300931725|ref|ZP_07147029.1| polynucleotide adenylyltransferase [Escherichia coli MS 187-1]
gi|312970241|ref|ZP_07784423.1| poly(A) polymerase family protein [Escherichia coli 1827-70]
gi|386612307|ref|YP_006131973.1| poly(A) polymerase PcnB [Escherichia coli UMNK88]
gi|422788379|ref|ZP_16841116.1| poly(A) polymerase [Escherichia coli H489]
gi|425286656|ref|ZP_18677610.1| poly(A) polymerase I [Escherichia coli 3006]
gi|432483785|ref|ZP_19725714.1| Poly(A) polymerase [Escherichia coli KTE212]
gi|432529444|ref|ZP_19766502.1| Poly(A) polymerase [Escherichia coli KTE233]
gi|432578856|ref|ZP_19815292.1| Poly(A) polymerase [Escherichia coli KTE56]
gi|432668965|ref|ZP_19904520.1| Poly(A) polymerase [Escherichia coli KTE119]
gi|433171909|ref|ZP_20356479.1| Poly(A) polymerase [Escherichia coli KTE232]
gi|442597841|ref|ZP_21015619.1| Poly(A) polymerase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
gi|194421918|gb|EDX37923.1| poly(A) polymerase [Escherichia coli 101-1]
gi|253972164|gb|ACT37835.1| poly(A) polymerase I [Escherichia coli B str. REL606]
gi|253976373|gb|ACT42043.1| poly(A) polymerase I [Escherichia coli BL21(DE3)]
gi|300460488|gb|EFK23981.1| polynucleotide adenylyltransferase [Escherichia coli MS 187-1]
gi|310337739|gb|EFQ02850.1| poly(A) polymerase family protein [Escherichia coli 1827-70]
gi|323960087|gb|EGB55733.1| poly(A) polymerase [Escherichia coli H489]
gi|332341476|gb|AEE54810.1| poly(A) polymerase PcnB [Escherichia coli UMNK88]
gi|408219767|gb|EKI43885.1| poly(A) polymerase I [Escherichia coli 3006]
gi|431020010|gb|ELD33401.1| Poly(A) polymerase [Escherichia coli KTE212]
gi|431057782|gb|ELD67200.1| Poly(A) polymerase [Escherichia coli KTE233]
gi|431109812|gb|ELE13762.1| Poly(A) polymerase [Escherichia coli KTE56]
gi|431214670|gb|ELF12424.1| Poly(A) polymerase [Escherichia coli KTE119]
gi|431697213|gb|ELJ62358.1| Poly(A) polymerase [Escherichia coli KTE232]
gi|441653506|emb|CCQ03835.1| Poly(A) polymerase [Escherichia coli O5:K4(L):H4 str. ATCC 23502]
Length = 454
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNIS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|157159375|ref|YP_001461313.1| poly(A) polymerase [Escherichia coli E24377A]
gi|157159609|ref|YP_001456927.1| poly(A) polymerase I [Escherichia coli HS]
gi|260853354|ref|YP_003227245.1| poly(A) polymerase [Escherichia coli O26:H11 str. 11368]
gi|260866293|ref|YP_003232695.1| poly(A) polymerase [Escherichia coli O111:H- str. 11128]
gi|300825359|ref|ZP_07105437.1| polynucleotide adenylyltransferase [Escherichia coli MS 119-7]
gi|300905560|ref|ZP_07123319.1| polynucleotide adenylyltransferase [Escherichia coli MS 84-1]
gi|300923068|ref|ZP_07139133.1| polynucleotide adenylyltransferase [Escherichia coli MS 182-1]
gi|301303752|ref|ZP_07209872.1| polynucleotide adenylyltransferase [Escherichia coli MS 124-1]
gi|301330067|ref|ZP_07222743.1| polynucleotide adenylyltransferase [Escherichia coli MS 78-1]
gi|331666385|ref|ZP_08367266.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA271]
gi|331680723|ref|ZP_08381382.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H591]
gi|415780928|ref|ZP_11490698.1| poly(A) polymerase family protein [Escherichia coli EPECa14]
gi|415823954|ref|ZP_11512329.1| poly(A) polymerase family protein [Escherichia coli OK1180]
gi|415864341|ref|ZP_11537435.1| polynucleotide adenylyltransferase [Escherichia coli MS 85-1]
gi|417126537|ref|ZP_11974091.1| polynucleotide adenylyltransferase [Escherichia coli 97.0246]
gi|417132215|ref|ZP_11977000.1| polynucleotide adenylyltransferase [Escherichia coli 5.0588]
gi|417157145|ref|ZP_11994769.1| polynucleotide adenylyltransferase [Escherichia coli 96.0497]
gi|417160235|ref|ZP_11997154.1| polynucleotide adenylyltransferase [Escherichia coli 99.0741]
gi|417191042|ref|ZP_12013638.1| polynucleotide adenylyltransferase [Escherichia coli 4.0522]
gi|417216895|ref|ZP_12023567.1| polynucleotide adenylyltransferase [Escherichia coli JB1-95]
gi|417269278|ref|ZP_12056638.1| polynucleotide adenylyltransferase [Escherichia coli 3.3884]
gi|417295623|ref|ZP_12082876.1| polynucleotide adenylyltransferase [Escherichia coli 900105 (10e)]
gi|417584211|ref|ZP_12235005.1| poly(A) polymerase family protein [Escherichia coli STEC_B2F1]
gi|417589762|ref|ZP_12240483.1| poly(A) polymerase family protein [Escherichia coli 2534-86]
gi|417637405|ref|ZP_12287589.1| poly(A) polymerase family protein [Escherichia coli TX1999]
gi|417864335|ref|ZP_12509381.1| hypothetical protein C22711_1268 [Escherichia coli O104:H4 str.
C227-11]
gi|418039574|ref|ZP_12677833.1| poly(A) polymerase I [Escherichia coli W26]
gi|419168112|ref|ZP_13712513.1| poly(A) polymerase [Escherichia coli DEC7A]
gi|419173513|ref|ZP_13717375.1| poly(A) polymerase I [Escherichia coli DEC7B]
gi|419179162|ref|ZP_13722789.1| poly(A) polymerase I [Escherichia coli DEC7C]
gi|419184622|ref|ZP_13728148.1| poly(A) polymerase I [Escherichia coli DEC7D]
gi|419189889|ref|ZP_13733362.1| poly(A) polymerase [Escherichia coli DEC7E]
gi|419195100|ref|ZP_13738515.1| poly(A) polymerase [Escherichia coli DEC8A]
gi|419201231|ref|ZP_13744463.1| poly(A) polymerase I [Escherichia coli DEC8B]
gi|419207093|ref|ZP_13750224.1| poly(A) polymerase I [Escherichia coli DEC8C]
gi|419213516|ref|ZP_13756551.1| poly(A) polymerase I [Escherichia coli DEC8D]
gi|419219355|ref|ZP_13762316.1| poly(A) polymerase I [Escherichia coli DEC8E]
gi|419224787|ref|ZP_13767682.1| poly(A) polymerase I [Escherichia coli DEC9A]
gi|419230625|ref|ZP_13773421.1| poly(A) polymerase I [Escherichia coli DEC9B]
gi|419235953|ref|ZP_13778706.1| poly(A) polymerase I [Escherichia coli DEC9C]
gi|419241540|ref|ZP_13784192.1| poly(A) polymerase I [Escherichia coli DEC9D]
gi|419246945|ref|ZP_13789564.1| poly(A) polymerase I [Escherichia coli DEC9E]
gi|419252779|ref|ZP_13795331.1| poly(A) polymerase I [Escherichia coli DEC10A]
gi|419258723|ref|ZP_13801187.1| poly(A) polymerase I [Escherichia coli DEC10B]
gi|419264467|ref|ZP_13806857.1| poly(A) polymerase I [Escherichia coli DEC10C]
gi|419270325|ref|ZP_13812660.1| poly(A) polymerase I [Escherichia coli DEC10D]
gi|419281773|ref|ZP_13823998.1| poly(A) polymerase I [Escherichia coli DEC10F]
gi|419343810|ref|ZP_13885196.1| poly(A) polymerase I [Escherichia coli DEC13A]
gi|419348230|ref|ZP_13889586.1| poly(A) polymerase I [Escherichia coli DEC13B]
gi|419353132|ref|ZP_13894421.1| poly(A) polymerase I [Escherichia coli DEC13C]
gi|419358477|ref|ZP_13899710.1| poly(A) polymerase I [Escherichia coli DEC13D]
gi|419363462|ref|ZP_13904646.1| poly(A) polymerase I [Escherichia coli DEC13E]
gi|419389556|ref|ZP_13930400.1| poly(A) polymerase I [Escherichia coli DEC15A]
gi|419400053|ref|ZP_13940807.1| poly(A) polymerase I [Escherichia coli DEC15B]
gi|419405295|ref|ZP_13946006.1| poly(A) polymerase I [Escherichia coli DEC15C]
gi|419410452|ref|ZP_13951131.1| poly(A) polymerase I [Escherichia coli DEC15D]
gi|419410770|ref|ZP_13951447.1| poly(A) polymerase I [Escherichia coli DEC15E]
gi|420383780|ref|ZP_14883172.1| poly(A) polymerase [Escherichia coli EPECa12]
gi|422957515|ref|ZP_16969729.1| Poly(A) polymerase [Escherichia coli H494]
gi|422990847|ref|ZP_16981618.1| Poly(A) polymerase [Escherichia coli O104:H4 str. C227-11]
gi|422992787|ref|ZP_16983551.1| Poly(A) polymerase [Escherichia coli O104:H4 str. C236-11]
gi|422997996|ref|ZP_16988752.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 09-7901]
gi|423006480|ref|ZP_16997224.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 04-8351]
gi|423008102|ref|ZP_16998840.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-3677]
gi|423022288|ref|ZP_17012991.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4404]
gi|423027443|ref|ZP_17018136.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4522]
gi|423033280|ref|ZP_17023964.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4623]
gi|423036146|ref|ZP_17026820.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|423041266|ref|ZP_17031933.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|423047952|ref|ZP_17038609.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|423056490|ref|ZP_17045295.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|423058501|ref|ZP_17047297.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|423709865|ref|ZP_17684219.1| Poly(A) polymerase [Escherichia coli B799]
gi|425376882|ref|ZP_18761314.1| poly(A) polymerase I [Escherichia coli EC1865]
gi|427803217|ref|ZP_18970284.1| poly(A) polymerase I [Escherichia coli chi7122]
gi|427807822|ref|ZP_18974887.1| poly(A) polymerase I [Escherichia coli]
gi|429722345|ref|ZP_19257244.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429774423|ref|ZP_19306427.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02030]
gi|429779683|ref|ZP_19311639.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429783738|ref|ZP_19315652.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02092]
gi|429789076|ref|ZP_19320952.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02093]
gi|429795306|ref|ZP_19327133.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02281]
gi|429801232|ref|ZP_19333011.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02318]
gi|429804864|ref|ZP_19336612.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02913]
gi|429809675|ref|ZP_19341378.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-03439]
gi|429815435|ref|ZP_19347095.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-04080]
gi|429820646|ref|ZP_19352261.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-03943]
gi|429906697|ref|ZP_19372667.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429910892|ref|ZP_19376849.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9941]
gi|429916732|ref|ZP_19382673.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429921770|ref|ZP_19387692.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429927587|ref|ZP_19393494.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429931520|ref|ZP_19397416.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429938063|ref|ZP_19403944.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429938778|ref|ZP_19404652.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429946419|ref|ZP_19412275.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429949067|ref|ZP_19414915.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429957334|ref|ZP_19423163.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec12-0466]
gi|432379760|ref|ZP_19622735.1| Poly(A) polymerase [Escherichia coli KTE12]
gi|432763427|ref|ZP_19997884.1| Poly(A) polymerase [Escherichia coli KTE48]
gi|432812294|ref|ZP_20046144.1| Poly(A) polymerase [Escherichia coli KTE101]
gi|432833245|ref|ZP_20066794.1| Poly(A) polymerase [Escherichia coli KTE136]
gi|432879399|ref|ZP_20096426.1| Poly(A) polymerase [Escherichia coli KTE154]
gi|433090491|ref|ZP_20276804.1| Poly(A) polymerase [Escherichia coli KTE138]
gi|433128431|ref|ZP_20313919.1| Poly(A) polymerase [Escherichia coli KTE163]
gi|433133332|ref|ZP_20318718.1| Poly(A) polymerase [Escherichia coli KTE166]
gi|157065289|gb|ABV04544.1| poly(A) polymerase [Escherichia coli HS]
gi|157081405|gb|ABV21113.1| poly(A) polymerase [Escherichia coli E24377A]
gi|257752003|dbj|BAI23505.1| poly(A) polymerase I [Escherichia coli O26:H11 str. 11368]
gi|257762649|dbj|BAI34144.1| poly(A) polymerase I [Escherichia coli O111:H- str. 11128]
gi|300402593|gb|EFJ86131.1| polynucleotide adenylyltransferase [Escherichia coli MS 84-1]
gi|300420630|gb|EFK03941.1| polynucleotide adenylyltransferase [Escherichia coli MS 182-1]
gi|300522172|gb|EFK43241.1| polynucleotide adenylyltransferase [Escherichia coli MS 119-7]
gi|300840879|gb|EFK68639.1| polynucleotide adenylyltransferase [Escherichia coli MS 124-1]
gi|300843913|gb|EFK71673.1| polynucleotide adenylyltransferase [Escherichia coli MS 78-1]
gi|315254944|gb|EFU34912.1| polynucleotide adenylyltransferase [Escherichia coli MS 85-1]
gi|323157782|gb|EFZ43885.1| poly(A) polymerase family protein [Escherichia coli EPECa14]
gi|323176455|gb|EFZ62047.1| poly(A) polymerase family protein [Escherichia coli OK1180]
gi|331066596|gb|EGI38473.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA271]
gi|331072186|gb|EGI43522.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli H591]
gi|341917624|gb|EGT67239.1| hypothetical protein C22711_1268 [Escherichia coli O104:H4 str.
C227-11]
gi|345332442|gb|EGW64900.1| poly(A) polymerase family protein [Escherichia coli STEC_B2F1]
gi|345346120|gb|EGW78456.1| poly(A) polymerase family protein [Escherichia coli 2534-86]
gi|345395919|gb|EGX25654.1| poly(A) polymerase family protein [Escherichia coli TX1999]
gi|354859346|gb|EHF19794.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 04-8351]
gi|354859833|gb|EHF20280.1| Poly(A) polymerase [Escherichia coli O104:H4 str. C227-11]
gi|354866530|gb|EHF26953.1| Poly(A) polymerase [Escherichia coli O104:H4 str. C236-11]
gi|354876864|gb|EHF37224.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 09-7901]
gi|354881873|gb|EHF42201.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4404]
gi|354884971|gb|EHF45282.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-3677]
gi|354886418|gb|EHF46705.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4522]
gi|354889934|gb|EHF50181.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4623]
gi|354902134|gb|EHF62256.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C1]
gi|354905460|gb|EHF65543.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C2]
gi|354907967|gb|EHF68023.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C3]
gi|354910238|gb|EHF70266.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C4]
gi|354918439|gb|EHF78395.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-4632 C5]
gi|371597985|gb|EHN86801.1| Poly(A) polymerase [Escherichia coli H494]
gi|378019394|gb|EHV82225.1| poly(A) polymerase [Escherichia coli DEC7A]
gi|378028709|gb|EHV91326.1| poly(A) polymerase I [Escherichia coli DEC7C]
gi|378034249|gb|EHV96815.1| poly(A) polymerase I [Escherichia coli DEC7D]
gi|378039004|gb|EHW01509.1| poly(A) polymerase I [Escherichia coli DEC7B]
gi|378043337|gb|EHW05773.1| poly(A) polymerase [Escherichia coli DEC7E]
gi|378054614|gb|EHW16892.1| poly(A) polymerase [Escherichia coli DEC8A]
gi|378058138|gb|EHW20358.1| poly(A) polymerase I [Escherichia coli DEC8B]
gi|378064635|gb|EHW26795.1| poly(A) polymerase I [Escherichia coli DEC8C]
gi|378070131|gb|EHW32214.1| poly(A) polymerase I [Escherichia coli DEC8D]
gi|378073861|gb|EHW35906.1| poly(A) polymerase I [Escherichia coli DEC8E]
gi|378083187|gb|EHW45122.1| poly(A) polymerase I [Escherichia coli DEC9A]
gi|378083492|gb|EHW45424.1| poly(A) polymerase I [Escherichia coli DEC9B]
gi|378091361|gb|EHW53192.1| poly(A) polymerase I [Escherichia coli DEC9C]
gi|378095845|gb|EHW57627.1| poly(A) polymerase I [Escherichia coli DEC9D]
gi|378103961|gb|EHW65623.1| poly(A) polymerase I [Escherichia coli DEC9E]
gi|378108883|gb|EHW70495.1| poly(A) polymerase I [Escherichia coli DEC10A]
gi|378118745|gb|EHW80247.1| poly(A) polymerase I [Escherichia coli DEC10B]
gi|378120081|gb|EHW81562.1| poly(A) polymerase I [Escherichia coli DEC10C]
gi|378122069|gb|EHW83513.1| poly(A) polymerase I [Escherichia coli DEC10D]
gi|378141373|gb|EHX02590.1| poly(A) polymerase I [Escherichia coli DEC10F]
gi|378190814|gb|EHX51392.1| poly(A) polymerase I [Escherichia coli DEC13A]
gi|378206009|gb|EHX66416.1| poly(A) polymerase I [Escherichia coli DEC13B]
gi|378209084|gb|EHX69460.1| poly(A) polymerase I [Escherichia coli DEC13D]
gi|378209767|gb|EHX70135.1| poly(A) polymerase I [Escherichia coli DEC13C]
gi|378220319|gb|EHX80580.1| poly(A) polymerase I [Escherichia coli DEC13E]
gi|378239203|gb|EHX99197.1| poly(A) polymerase I [Escherichia coli DEC15B]
gi|378242050|gb|EHY02016.1| poly(A) polymerase I [Escherichia coli DEC15C]
gi|378246404|gb|EHY06331.1| poly(A) polymerase I [Escherichia coli DEC15A]
gi|378249917|gb|EHY09826.1| poly(A) polymerase I [Escherichia coli DEC15D]
gi|378261780|gb|EHY21571.1| poly(A) polymerase I [Escherichia coli DEC15E]
gi|383477438|gb|EID69358.1| poly(A) polymerase I [Escherichia coli W26]
gi|385705083|gb|EIG42150.1| Poly(A) polymerase [Escherichia coli B799]
gi|386144787|gb|EIG91251.1| polynucleotide adenylyltransferase [Escherichia coli 97.0246]
gi|386150069|gb|EIH01358.1| polynucleotide adenylyltransferase [Escherichia coli 5.0588]
gi|386165895|gb|EIH32415.1| polynucleotide adenylyltransferase [Escherichia coli 96.0497]
gi|386174726|gb|EIH46719.1| polynucleotide adenylyltransferase [Escherichia coli 99.0741]
gi|386192014|gb|EIH80755.1| polynucleotide adenylyltransferase [Escherichia coli 4.0522]
gi|386193757|gb|EIH88041.1| polynucleotide adenylyltransferase [Escherichia coli JB1-95]
gi|386228083|gb|EII55439.1| polynucleotide adenylyltransferase [Escherichia coli 3.3884]
gi|386261242|gb|EIJ16710.1| polynucleotide adenylyltransferase [Escherichia coli 900105 (10e)]
gi|391310129|gb|EIQ67785.1| poly(A) polymerase [Escherichia coli EPECa12]
gi|408311083|gb|EKJ28095.1| poly(A) polymerase I [Escherichia coli EC1865]
gi|412961399|emb|CCK45304.1| poly(A) polymerase I [Escherichia coli chi7122]
gi|412968001|emb|CCJ42614.1| poly(A) polymerase I [Escherichia coli]
gi|429352473|gb|EKY89188.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02030]
gi|429353529|gb|EKY90237.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02033-1]
gi|429354027|gb|EKY90732.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02092]
gi|429367517|gb|EKZ04111.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02093]
gi|429368669|gb|EKZ05255.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02281]
gi|429370895|gb|EKZ07458.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02318]
gi|429383269|gb|EKZ19730.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-02913]
gi|429386118|gb|EKZ22568.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-03439]
gi|429387031|gb|EKZ23476.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-03943]
gi|429398291|gb|EKZ34634.1| Poly(A) polymerase [Escherichia coli O104:H4 str. 11-04080]
gi|429400007|gb|EKZ36325.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9450]
gi|429400341|gb|EKZ36658.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9990]
gi|429411432|gb|EKZ47642.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4984]
gi|429413004|gb|EKZ49194.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4986]
gi|429420056|gb|EKZ56190.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4987]
gi|429423918|gb|EKZ60025.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-4988]
gi|429430075|gb|EKZ66142.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-5603]
gi|429436017|gb|EKZ72034.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-5604]
gi|429443201|gb|EKZ79154.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec12-0465]
gi|429445623|gb|EKZ81564.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-6006]
gi|429452092|gb|EKZ87979.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec12-0466]
gi|429456943|gb|EKZ92786.1| Poly(A) polymerase [Escherichia coli O104:H4 str. Ec11-9941]
gi|430894369|gb|ELC16658.1| Poly(A) polymerase [Escherichia coli KTE12]
gi|431314502|gb|ELG02454.1| Poly(A) polymerase [Escherichia coli KTE48]
gi|431358397|gb|ELG45055.1| Poly(A) polymerase [Escherichia coli KTE101]
gi|431389344|gb|ELG73057.1| Poly(A) polymerase [Escherichia coli KTE136]
gi|431415197|gb|ELG97747.1| Poly(A) polymerase [Escherichia coli KTE154]
gi|431616264|gb|ELI85331.1| Poly(A) polymerase [Escherichia coli KTE138]
gi|431652325|gb|ELJ19479.1| Poly(A) polymerase [Escherichia coli KTE163]
gi|431663902|gb|ELJ30654.1| Poly(A) polymerase [Escherichia coli KTE166]
Length = 454
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|26991381|ref|NP_746806.1| poly(A) polymerase [Pseudomonas putida KT2440]
gi|24986448|gb|AAN70270.1|AE016667_3 poly(A) polymerase [Pseudomonas putida KT2440]
Length = 460
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQ 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 GDAHRSSHNASGR-ILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 173
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 174 DYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTYLPIRGLAPML 233
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G + +L L E L P A H R ++ L
Sbjct: 234 REIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASA-----HALDERPTYTHTL 288
Query: 224 LS-LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+S +N D + +P + LW A+ A L +Q P+
Sbjct: 289 ISQALNNTDLRVKQGKPVTPAFLFAALLWPALPARVLHLQNQGVPPI 335
>gi|374262923|ref|ZP_09621483.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella
drancourtii LLAP12]
gi|363536739|gb|EHL30173.1| Poly(A) polymerase (PAP) (plasmid copy number protein) [Legionella
drancourtii LLAP12]
Length = 379
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 133/275 (48%), Gaps = 24/275 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST-----SG 55
ML++ PKDFD+ T+A ++ +F I+G+RF + HV F I+EV++F +
Sbjct: 1 MLHKAPKDFDVATNATPNQIKNLFRNGRIIGRRFKLVHVLFHREIIEVATFRSHEAVDES 60
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
++ + + G ++D WR RDFTIN L ++ I D+ GG++D++
Sbjct: 61 QQTNERGMLVRDNAFGSLDED--AWR----RDFTINSLYYNITDSTIIDFTGGVKDVQDK 114
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T ++ED R+LRA+R +A+L F + ET +S I + RL EM
Sbjct: 115 LIRMIGDPVTRYKEDPVRMLRAVRFSAKLHFNLAPETEAPFPDISYLITHVSSSRLFDEM 174
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLL 234
+ G+AE +LL ++GL + L P A L N LL++ N D +
Sbjct: 175 TKLYQCGNAETVQKLLLQYGLFQHLCPQTTALLDSQ------YPVNALLAIALENTDIRI 228
Query: 235 APDRPCHSS------LWIAILAFHKALSDQPRDPL 263
D+P + LW ++ K L DPL
Sbjct: 229 RDDKPVTPAFLFAVFLWFPMIERSKQLQSAGMDPL 263
>gi|21231215|ref|NP_637132.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768778|ref|YP_243540.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991892|ref|YP_001903902.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv.
campestris str. B100]
gi|21112860|gb|AAM41056.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574110|gb|AAY49520.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris str. 8004]
gi|167733652|emb|CAP51857.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
campestris]
Length = 455
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 139/298 (46%), Gaps = 27/298 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ TSA +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATSATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANIDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 186 GDPELRYQEDPVRMLRAVRLAAKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L ++GLL L P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVASFEGLERYGLLGALFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL---AFHKALSD------QPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
+ A+L AF + L QP D A + ++ LE V + RR +
Sbjct: 303 SPAFLFALLLWPAFCRTLMGLQAQGVQPEDAQRRAADRVTLHQ----LERVALPRRFS 356
>gi|344942132|ref|ZP_08781420.1| poly(A) polymerase [Methylobacter tundripaludum SV96]
gi|344263324|gb|EGW23595.1| poly(A) polymerase [Methylobacter tundripaludum SV96]
Length = 467
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 124/261 (47%), Gaps = 31/261 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L R PKDFD++T+A+ +V +VF C ++G+RF + HVHF I+EV++F +G
Sbjct: 78 LLGREPKDFDVVTNADPDQVRKVFRNCRLIGRRFRLAHVHFGREIIEVATFRGAGEEQND 137
Query: 57 --------RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
R RD Y G E+D WR RDFT+N L ++ + DY+GG
Sbjct: 138 KQVLNKEGRLLRDNVY------GTIEEDV--WR----RDFTVNALYYNIKDFSVVDYVGG 185
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D + ++ + F+ED R+LRA+R A +LGF+ + + + +
Sbjct: 186 MADHKTGTLKLIGDPEMRFREDPVRMLRAVRFAVKLGFKLDSACEKAIHNDVQLLASIPS 245
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV--KHGFRRRDKRSNLLLSL 226
RL E + G A + +L +GL +VL P L GF R LL+
Sbjct: 246 ARLYDEALKLFLSGYALQTFEMLRHYGLFQVLFPSTENSLAVEDSGFPRL-----LLIKA 300
Query: 227 FSNLDKLLAPDRPCHSSLWIA 247
N DK +A + + +A
Sbjct: 301 LENSDKRIAEGKTVTAYFLLA 321
>gi|420132885|ref|ZP_14641188.1| poly(A) polymerase I, partial [Escherichia coli O26:H11 str.
CVM9952]
gi|394427745|gb|EJF00398.1| poly(A) polymerase I, partial [Escherichia coli O26:H11 str.
CVM9952]
Length = 366
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|148549764|ref|YP_001269866.1| poly(A) polymerase [Pseudomonas putida F1]
gi|397693392|ref|YP_006531272.1| poly(A) polymerase [Pseudomonas putida DOT-T1E]
gi|421523938|ref|ZP_15970565.1| poly(A) polymerase [Pseudomonas putida LS46]
gi|148513822|gb|ABQ80682.1| poly(A) polymerase [Pseudomonas putida F1]
gi|397330122|gb|AFO46481.1| poly(A) polymerase [Pseudomonas putida DOT-T1E]
gi|402752183|gb|EJX12690.1| poly(A) polymerase [Pseudomonas putida LS46]
Length = 460
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQ 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 GDAHRSSHNASGR-ILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 173
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 174 DYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTYLPIRGLAPML 233
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G + +L L E L P A H R ++ L
Sbjct: 234 REIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASA-----HALDERPTYTHTL 288
Query: 224 LS-LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+S +N D + +P + LW A+ A L +Q P+
Sbjct: 289 ISQALNNTDLRVKQGKPVTPAFLFAALLWPALPARVLHLQNQGVPPI 335
>gi|429108934|ref|ZP_19170704.1| Poly(A) polymerase [Cronobacter malonaticus 507]
gi|426310091|emb|CCJ96817.1| Poly(A) polymerase [Cronobacter malonaticus 507]
Length = 448
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 55 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEENAG 114
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG+ D+++ +
Sbjct: 115 DRATSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGLNDLKEGII 174
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AARL R S ET + L+ + + RL E
Sbjct: 175 RLIGDPETRYREDPVRMLRAVRFAARLDMRISPETGEPIPRLATLLNDVPPARLFEESLK 234
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G A+ RLL ++ L + L P + Y + G
Sbjct: 235 LLQTGYGYATYRLLCEYNLFQPLFPGISRYFTEKG 269
>gi|78047370|ref|YP_363545.1| polynucleotide adenylyltransferase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325924974|ref|ZP_08186400.1| poly(A) polymerase [Xanthomonas perforans 91-118]
gi|78035800|emb|CAJ23491.1| Polynucleotide adenylyltransferase [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544637|gb|EGD15994.1| poly(A) polymerase [Xanthomonas perforans 91-118]
Length = 455
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 14/249 (5%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATDATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 186 GDPELRYQEDPVRMLRAVRLAAKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L ++GLL VL P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVASFEGLERYGLLGVLFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL 249
+ A+L
Sbjct: 303 SPAFLFALL 311
>gi|58581989|ref|YP_201005.1| polynucleotide adenylyltransferase [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|84623904|ref|YP_451276.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188576403|ref|YP_001913332.1| poly(A) polymerase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58426583|gb|AAW75620.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|84367844|dbj|BAE69002.1| polynucleotide adenyltransferase [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188520855|gb|ACD58800.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 455
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 139/298 (46%), Gaps = 27/298 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ TSA +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATSATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E+D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEEDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+A++L F TA + L+ + + RL E+ +
Sbjct: 186 GDPELRYQEDPVRMLRAVRLASKLNFEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L ++GL L P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVASFEGLERYGLFGALFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL---AFHKALSD------QPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
+ A+L AF + L QP D A + ++ LE V + RR +
Sbjct: 303 SPAFLFALLLWPAFCRTLMGLQAQGVQPEDAQRRAADRVTLHQ----LERVALPRRFS 356
>gi|416033893|ref|ZP_11573173.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|347998763|gb|EGY39672.1| polyA polymerase [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
Length = 417
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ +F QC +VG+RF + HV F I+EV++F +G
Sbjct: 38 LLGKKPKDFDVATNARPEQIQAIFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHAEH 96
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GI+D++ K
Sbjct: 97 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLRDYFNGIDDLKNGK 156
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 157 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESL 216
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L GS + RLL ++GL E L P+ Y + R ++L ++ D+ +A
Sbjct: 217 KLLQGGSGVKTYRLLRQYGLFEQLFPLLQNYFTE---REDSMAEKMILRALTSTDERVAD 273
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 274 KLPINPAFLFA 284
>gi|253774829|ref|YP_003037660.1| poly(A) polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253325873|gb|ACT30475.1| poly(A) polymerase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
Length = 472
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNIS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|429114053|ref|ZP_19174971.1| Poly(A) polymerase [Cronobacter sakazakii 701]
gi|426317182|emb|CCK01084.1| Poly(A) polymerase [Cronobacter sakazakii 701]
Length = 467
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 55 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEENAG 114
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG+ D+++ +
Sbjct: 115 DRATSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGLNDLKEGII 174
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AARL R S ET + L+ + + RL E
Sbjct: 175 RLIGDPETRYREDPVRMLRAVRFAARLDMRISPETGEPIPRLATLLNDVPPARLFEESLK 234
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G A+ RLL ++ L + L P + Y + G
Sbjct: 235 LLQTGYGYATYRLLCEYNLFQPLFPGISRYFTEKG 269
>gi|392977649|ref|YP_006476237.1| poly(A) polymerase I [Enterobacter cloacae subsp. dissolvens SDM]
gi|392323582|gb|AFM58535.1| poly(A) polymerase I [Enterobacter cloacae subsp. dissolvens SDM]
Length = 447
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 55 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGAS 114
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D+++ +
Sbjct: 115 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLKEGLI 174
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S ETA + L+ I + RL E
Sbjct: 175 RLIGTPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLINDVPPARLFEEALK 234
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + LL ++ L + L P Y + G
Sbjct: 235 LLQAGHGFETYNLLREYNLFQPLFPTITRYFTEKG 269
>gi|384427654|ref|YP_005637013.1| poly(A) polymerase [Xanthomonas campestris pv. raphani 756C]
gi|341936756|gb|AEL06895.1| poly(A) polymerase [Xanthomonas campestris pv. raphani 756C]
Length = 455
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 14/249 (5%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ TSA +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATSATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANIDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 186 GDPELRYQEDPVRMLRAVRLAAKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L ++GLL L P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVASFEGLERYGLLGALFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL 249
+ A+L
Sbjct: 303 SPAFLFALL 311
>gi|218552724|ref|YP_002385637.1| poly(A) polymerase I [Escherichia coli IAI1]
gi|218693609|ref|YP_002401276.1| poly(A) polymerase [Escherichia coli 55989]
gi|293476802|ref|ZP_06665210.1| poly(A) polymerase [Escherichia coli B088]
gi|332281167|ref|ZP_08393580.1| poly(A) polymerase I [Shigella sp. D9]
gi|407467599|ref|YP_006785959.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407483685|ref|YP_006780834.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2011C-3493]
gi|410484225|ref|YP_006771771.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2009EL-2050]
gi|417803485|ref|ZP_12450525.1| poly(A) polymerase I [Escherichia coli O104:H4 str. LB226692]
gi|417831245|ref|ZP_12477773.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 01-09591]
gi|418942377|ref|ZP_13495656.1| poly(A) polymerase I [Escherichia coli O157:H43 str. T22]
gi|419874095|ref|ZP_14396049.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9534]
gi|419880088|ref|ZP_14401497.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9545]
gi|419891839|ref|ZP_14411880.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9570]
gi|419893423|ref|ZP_14413407.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9574]
gi|419904633|ref|ZP_14423624.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM9942]
gi|419906067|ref|ZP_14425001.1| poly(A) polymerase [Escherichia coli O26:H11 str. CVM10026]
gi|420087253|ref|ZP_14599224.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9602]
gi|420092468|ref|ZP_14604170.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9634]
gi|420100281|ref|ZP_14611461.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9455]
gi|420105971|ref|ZP_14616403.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9553]
gi|420113103|ref|ZP_14622868.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10021]
gi|420119469|ref|ZP_14628745.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10030]
gi|420125554|ref|ZP_14634356.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10224]
gi|424746684|ref|ZP_18174906.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CFSAN001629]
gi|424756677|ref|ZP_18184483.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CFSAN001630]
gi|424774747|ref|ZP_18201757.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CFSAN001632]
gi|443616156|ref|YP_007380012.1| poly(A) polymerase I [Escherichia coli APEC O78]
gi|450209418|ref|ZP_21893932.1| poly(A) polymerase I [Escherichia coli O08]
gi|218350341|emb|CAU96024.1| poly(A) polymerase I [Escherichia coli 55989]
gi|218359492|emb|CAQ97030.1| poly(A) polymerase I [Escherichia coli IAI1]
gi|291321255|gb|EFE60697.1| poly(A) polymerase [Escherichia coli B088]
gi|332103519|gb|EGJ06865.1| poly(A) polymerase I [Shigella sp. D9]
gi|340736114|gb|EGR65164.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 01-09591]
gi|340742031|gb|EGR76172.1| poly(A) polymerase I [Escherichia coli O104:H4 str. LB226692]
gi|375322293|gb|EHS68059.1| poly(A) polymerase I [Escherichia coli O157:H43 str. T22]
gi|388348858|gb|EIL14426.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9570]
gi|388351551|gb|EIL16770.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9534]
gi|388367097|gb|EIL30792.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM9942]
gi|388367357|gb|EIL31041.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9574]
gi|388369896|gb|EIL33462.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9545]
gi|388379997|gb|EIL42623.1| poly(A) polymerase [Escherichia coli O26:H11 str. CVM10026]
gi|394393503|gb|EJE70188.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9602]
gi|394394979|gb|EJE71495.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10224]
gi|394400486|gb|EJE76400.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CVM9634]
gi|394412989|gb|EJE87075.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10021]
gi|394417719|gb|EJE91436.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9553]
gi|394420988|gb|EJE94483.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CVM9455]
gi|394431344|gb|EJF03552.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CVM10030]
gi|406779387|gb|AFS58811.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407055982|gb|AFS76033.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2011C-3493]
gi|407063634|gb|AFS84681.1| poly(A) polymerase I [Escherichia coli O104:H4 str. 2009EL-2071]
gi|421933603|gb|EKT91390.1| poly(A) polymerase I [Escherichia coli O111:H8 str. CFSAN001632]
gi|421947701|gb|EKU04764.1| poly(A) polymerase I [Escherichia coli O26:H11 str. CFSAN001629]
gi|421949599|gb|EKU06533.1| poly(A) polymerase I [Escherichia coli O111:H11 str. CFSAN001630]
gi|443420664|gb|AGC85568.1| poly(A) polymerase I [Escherichia coli APEC O78]
gi|449323672|gb|EMD13623.1| poly(A) polymerase I [Escherichia coli O08]
Length = 472
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|415763864|ref|ZP_11482201.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D17P-3]
gi|348654445|gb|EGY70068.1| polyA polymerase [Aggregatibacter actinomycetemcomitans D17P-3]
Length = 432
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 129/251 (51%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ +F QC +VG+RF + HV F I+EV++F +G
Sbjct: 38 LLGKKPKDFDVATNARPEQIQAIFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHAEH 96
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GI+D++ K
Sbjct: 97 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLRDYFNGIDDLKNGK 156
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K LS + + RL E
Sbjct: 157 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKELSHLLKNIPPARLFEESL 216
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L GS + RLL ++GL E L P+ Y + R ++L ++ D+ +A
Sbjct: 217 KLLQGGSGVKTYRLLRQYGLFEQLFPLLQNYFTE---REDSMAEKMILRALTSTDERVAD 273
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 274 KLPINPAFLFA 284
>gi|398942092|ref|ZP_10670122.1| poly(A) polymerase [Pseudomonas sp. GM41(2012)]
gi|398161049|gb|EJM49294.1| poly(A) polymerase [Pseudomonas sp. GM41(2012)]
Length = 466
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSAAPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|366159411|ref|ZP_09459273.1| poly(A) polymerase I [Escherichia sp. TW09308]
Length = 472
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFSVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|417791913|ref|ZP_12439328.1| poly(A) polymerase I [Cronobacter sakazakii E899]
gi|429104850|ref|ZP_19166719.1| Poly(A) polymerase [Cronobacter malonaticus 681]
gi|429120966|ref|ZP_19181621.1| Poly(A) polymerase [Cronobacter sakazakii 680]
gi|449309465|ref|YP_007441821.1| poly(A) polymerase I [Cronobacter sakazakii SP291]
gi|333953996|gb|EGL71883.1| poly(A) polymerase I [Cronobacter sakazakii E899]
gi|426291573|emb|CCJ92832.1| Poly(A) polymerase [Cronobacter malonaticus 681]
gi|426324596|emb|CCK12358.1| Poly(A) polymerase [Cronobacter sakazakii 680]
gi|449099498|gb|AGE87532.1| poly(A) polymerase I [Cronobacter sakazakii SP291]
Length = 448
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 55 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEENAG 114
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG+ D+++ +
Sbjct: 115 DRATSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGLNDLKEGII 174
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AARL R S ET + L+ + + RL E
Sbjct: 175 RLIGDPETRYREDPVRMLRAVRFAARLDMRISPETGEPIPRLATLLNDVPPARLFEESLK 234
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G A+ RLL ++ L + L P + Y + G
Sbjct: 235 LLQTGYGYATYRLLCEYNLFQPLFPGISRYFTEKG 269
>gi|395445449|ref|YP_006385702.1| poly polymerase [Pseudomonas putida ND6]
gi|388559446|gb|AFK68587.1| poly polymerase [Pseudomonas putida ND6]
Length = 436
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 132/287 (45%), Gaps = 42/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 43 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQ 102
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 103 GDAHRSSHNASGR-ILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 149
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 150 DYANGVHDVRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTYLPIRGLAPML 209
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G + +L L E L P A H R ++ L
Sbjct: 210 REIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASA-----HALDERPTYTHTL 264
Query: 224 LS-LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+S +N D + +P + LW A+ A L +Q P+
Sbjct: 265 ISQALNNTDLRVKQGKPVTPAFLFAALLWPALPARVLHLQNQGVPPI 311
>gi|389842185|ref|YP_006344269.1| poly(A) polymerase I [Cronobacter sakazakii ES15]
gi|387852661|gb|AFK00759.1| poly(A) polymerase I [Cronobacter sakazakii ES15]
Length = 444
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 111/215 (51%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 55 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEENAG 114
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG+ D+++ +
Sbjct: 115 DRATSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGLNDLKEGII 174
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AARL R S ET + L+ + + RL E
Sbjct: 175 RLIGDPETRYREDPVRMLRAVRFAARLDMRISPETGEPIPRLATLLNDVPPARLFEESLK 234
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G A+ RLL ++ L + L P + Y + G
Sbjct: 235 LLQTGYGYATYRLLCEYNLFQPLFPGISRYFTEKG 269
>gi|444353078|ref|YP_007389222.1| Poly(A) polymerase (EC 2.7.7.19) [Enterobacter aerogenes EA1509E]
gi|443903908|emb|CCG31682.1| Poly(A) polymerase (EC 2.7.7.19) [Enterobacter aerogenes EA1509E]
Length = 454
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 129/259 (49%), Gaps = 6/259 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 63 LLGKKPKDFDVTTSATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTN 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG+ D+++ +
Sbjct: 123 DRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMRDLQEGVI 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S E+A + L+ + + RL E+
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAAKLHMRISAESAEPIPRLATLLHDVPPARLFEEVLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + +LL ++ L + L P Y + G ++ +++ + N D L D
Sbjct: 243 LLQAGYGYETYQLLREYSLFQPLFPTITRYFTERGDSPMER---IIIQVLKNTDNRLHND 299
Query: 238 RPCHSSLWIAILAFHKALS 256
+ + A++ ++ L
Sbjct: 300 MRVNPAFLFAVMFWYPLLE 318
>gi|104783677|ref|YP_610175.1| poly(A) polymerase I (PAP) [Pseudomonas entomophila L48]
gi|95112664|emb|CAK17392.1| poly(A) polymerase I (PAP) [Pseudomonas entomophila L48]
Length = 464
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 123/267 (46%), Gaps = 36/267 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAPHSDEDQ 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 ADSHRSSHNASGR-ILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 173
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 174 DYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTVAPIRKLAPML 233
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E + G + +L L E L P + H R ++ L
Sbjct: 234 RDIPPARLFEESLKLFLNGQGAMTFEMLVDLELFEPLFPASS-----HALEERPTYTHTL 288
Query: 224 LS-LFSNLDKLLAPDRPCHSSLWIAIL 249
+S +N D + +P + A L
Sbjct: 289 ISQALTNTDLRVKQGKPVTPAFLFAAL 315
>gi|432567017|ref|ZP_19803549.1| Poly(A) polymerase [Escherichia coli KTE53]
gi|431103596|gb|ELE08239.1| Poly(A) polymerase [Escherichia coli KTE53]
Length = 454
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPLPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|416342953|ref|ZP_11676957.1| Poly(A) polymerase [Escherichia coli EC4100B]
gi|320200334|gb|EFW74920.1| Poly(A) polymerase [Escherichia coli EC4100B]
Length = 454
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYDTYKLLCEYHLFQPLFPAITRYFTENG 276
>gi|339489424|ref|YP_004703952.1| poly(A) polymerase [Pseudomonas putida S16]
gi|338840267|gb|AEJ15072.1| poly(A) polymerase [Pseudomonas putida S16]
Length = 462
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 131/287 (45%), Gaps = 42/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGIRPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQ 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 GDSHRSSHNASGR-ILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 173
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 174 DYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTVQPIRELAPLL 233
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G +L L E L P + H R ++ L
Sbjct: 234 REIPPARLFEESLKLFLSGQGAIVFEMLVDLQLFEPLFPASS-----HALDERPTYTHTL 288
Query: 224 LS-LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+S +N D + +P + LW A+ A L +Q P+
Sbjct: 289 ISQALNNTDLRVKQGKPVTPAFLFAALLWPALPARVLHLQNQGVPPI 335
>gi|336248784|ref|YP_004592494.1| poly(A) polymerase I [Enterobacter aerogenes KCTC 2190]
gi|334734840|gb|AEG97215.1| poly(A) polymerase I [Enterobacter aerogenes KCTC 2190]
Length = 436
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 129/259 (49%), Gaps = 6/259 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 45 LLGKKPKDFDVTTSATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTN 104
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG+ D+++ +
Sbjct: 105 DRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMRDLQEGVI 164
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S E+A + L+ + + RL E+
Sbjct: 165 RLIGDPETRYREDPVRMLRAVRFAAKLHMRISAESAEPIPRLATLLHDVPPARLFEEVLK 224
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + +LL ++ L + L P Y + G ++ +++ + N D L D
Sbjct: 225 LLQAGYGYETYQLLREYSLFQPLFPTITRYFTERGDSPMER---IIIQVLKNTDNRLHND 281
Query: 238 RPCHSSLWIAILAFHKALS 256
+ + A++ ++ L
Sbjct: 282 MRVNPAFLFAVMFWYPLLE 300
>gi|15836832|ref|NP_297520.1| polynucleotide adenylyltransferase [Xylella fastidiosa 9a5c]
gi|9105036|gb|AAF83040.1|AE003876_5 polynucleotide adenyltransferase [Xylella fastidiosa 9a5c]
Length = 421
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 122/244 (50%), Gaps = 4/244 (1%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A +++ ++F C ++G+RF + HV F I+EV++F + S D + E
Sbjct: 51 PKDFDLATDATPEQIKQLFRSCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELE 110
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
R + CD + +RDFT N L + + DY+GG ED++ ++ +
Sbjct: 111 NGRLV-CDNVYGTIEDDATRRDFTCNALYYTIEDFSVRDYVGGFEDVQSRLMRLIGDPVR 169
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAE 185
+QED R+LRA+R+A +LGF TA + ++ + + RL E+ + G A
Sbjct: 170 RYQEDPVRMLRAVRLAVKLGFEIEAGTAEPISRMAGLLADVAPARLFEEVLKLFLSGHAV 229
Query: 186 ASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLW 245
AS L FGL++VL P A L + R +L+ + DK + + P +
Sbjct: 230 ASFEALEDFGLIDVLFPESAKALRAN---RSGALRRVLIEGLHSTDKRVIKEEPVSPAFL 286
Query: 246 IAIL 249
A+L
Sbjct: 287 FALL 290
>gi|293403213|ref|ZP_06647310.1| pcnB [Escherichia coli FVEC1412]
gi|298378747|ref|ZP_06988631.1| poly(A) polymerase [Escherichia coli FVEC1302]
gi|300900821|ref|ZP_07118963.1| polynucleotide adenylyltransferase [Escherichia coli MS 198-1]
gi|331661517|ref|ZP_08362441.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA143]
gi|417584961|ref|ZP_12235744.1| poly(A) polymerase family protein [Escherichia coli STEC_C165-02]
gi|419935251|ref|ZP_14452336.1| poly(A) polymerase I [Escherichia coli 576-1]
gi|432351777|ref|ZP_19595090.1| Poly(A) polymerase [Escherichia coli KTE2]
gi|432400223|ref|ZP_19642984.1| Poly(A) polymerase [Escherichia coli KTE26]
gi|432429254|ref|ZP_19671720.1| Poly(A) polymerase [Escherichia coli KTE181]
gi|432463996|ref|ZP_19706116.1| Poly(A) polymerase [Escherichia coli KTE204]
gi|432474140|ref|ZP_19716157.1| Poly(A) polymerase [Escherichia coli KTE208]
gi|432492447|ref|ZP_19734292.1| Poly(A) polymerase [Escherichia coli KTE213]
gi|432520792|ref|ZP_19757963.1| Poly(A) polymerase [Escherichia coli KTE228]
gi|432540966|ref|ZP_19777846.1| Poly(A) polymerase [Escherichia coli KTE235]
gi|432634589|ref|ZP_19870496.1| Poly(A) polymerase [Escherichia coli KTE80]
gi|432644180|ref|ZP_19879994.1| Poly(A) polymerase [Escherichia coli KTE83]
gi|432664300|ref|ZP_19899902.1| Poly(A) polymerase [Escherichia coli KTE116]
gi|432768952|ref|ZP_20003331.1| Poly(A) polymerase [Escherichia coli KTE50]
gi|432773295|ref|ZP_20007597.1| Poly(A) polymerase [Escherichia coli KTE54]
gi|432837703|ref|ZP_20071199.1| Poly(A) polymerase [Escherichia coli KTE140]
gi|432883834|ref|ZP_20099037.1| Poly(A) polymerase [Escherichia coli KTE158]
gi|432909701|ref|ZP_20116974.1| Poly(A) polymerase [Escherichia coli KTE190]
gi|432958872|ref|ZP_20149730.1| Poly(A) polymerase [Escherichia coli KTE202]
gi|433017117|ref|ZP_20205393.1| Poly(A) polymerase [Escherichia coli KTE105]
gi|433051358|ref|ZP_20238607.1| Poly(A) polymerase [Escherichia coli KTE122]
gi|433061351|ref|ZP_20248325.1| Poly(A) polymerase [Escherichia coli KTE125]
gi|433066264|ref|ZP_20253119.1| Poly(A) polymerase [Escherichia coli KTE128]
gi|433157081|ref|ZP_20341964.1| Poly(A) polymerase [Escherichia coli KTE177]
gi|433176504|ref|ZP_20360984.1| Poly(A) polymerase [Escherichia coli KTE82]
gi|433201584|ref|ZP_20385401.1| Poly(A) polymerase [Escherichia coli KTE95]
gi|291430128|gb|EFF03142.1| pcnB [Escherichia coli FVEC1412]
gi|298281081|gb|EFI22582.1| poly(A) polymerase [Escherichia coli FVEC1302]
gi|300355698|gb|EFJ71568.1| polynucleotide adenylyltransferase [Escherichia coli MS 198-1]
gi|331061432|gb|EGI33395.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Escherichia
coli TA143]
gi|345342324|gb|EGW74720.1| poly(A) polymerase family protein [Escherichia coli STEC_C165-02]
gi|388404989|gb|EIL65428.1| poly(A) polymerase I [Escherichia coli 576-1]
gi|430881356|gb|ELC04610.1| Poly(A) polymerase [Escherichia coli KTE2]
gi|430930338|gb|ELC50839.1| Poly(A) polymerase [Escherichia coli KTE26]
gi|430948436|gb|ELC68024.1| Poly(A) polymerase [Escherichia coli KTE181]
gi|430983299|gb|ELC99962.1| Poly(A) polymerase [Escherichia coli KTE204]
gi|431011831|gb|ELD25905.1| Poly(A) polymerase [Escherichia coli KTE208]
gi|431014199|gb|ELD27908.1| Poly(A) polymerase [Escherichia coli KTE213]
gi|431046175|gb|ELD56294.1| Poly(A) polymerase [Escherichia coli KTE228]
gi|431065121|gb|ELD73898.1| Poly(A) polymerase [Escherichia coli KTE235]
gi|431165441|gb|ELE65794.1| Poly(A) polymerase [Escherichia coli KTE80]
gi|431176061|gb|ELE76047.1| Poly(A) polymerase [Escherichia coli KTE83]
gi|431205339|gb|ELF03832.1| Poly(A) polymerase [Escherichia coli KTE116]
gi|431320110|gb|ELG07758.1| Poly(A) polymerase [Escherichia coli KTE50]
gi|431321805|gb|ELG09405.1| Poly(A) polymerase [Escherichia coli KTE54]
gi|431392534|gb|ELG76107.1| Poly(A) polymerase [Escherichia coli KTE140]
gi|431420760|gb|ELH03036.1| Poly(A) polymerase [Escherichia coli KTE158]
gi|431448751|gb|ELH29464.1| Poly(A) polymerase [Escherichia coli KTE190]
gi|431483367|gb|ELH63059.1| Poly(A) polymerase [Escherichia coli KTE202]
gi|431538049|gb|ELI14154.1| Poly(A) polymerase [Escherichia coli KTE105]
gi|431576451|gb|ELI49138.1| Poly(A) polymerase [Escherichia coli KTE122]
gi|431589630|gb|ELI60844.1| Poly(A) polymerase [Escherichia coli KTE125]
gi|431593126|gb|ELI63690.1| Poly(A) polymerase [Escherichia coli KTE128]
gi|431683250|gb|ELJ48888.1| Poly(A) polymerase [Escherichia coli KTE177]
gi|431711681|gb|ELJ75994.1| Poly(A) polymerase [Escherichia coli KTE82]
gi|431727310|gb|ELJ91070.1| Poly(A) polymerase [Escherichia coli KTE95]
Length = 454
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYNLLCEYHLFQPLFPTITRYFTENG 276
>gi|145630638|ref|ZP_01786417.1| polyA polymerase [Haemophilus influenzae R3021]
gi|144983764|gb|EDJ91214.1| polyA polymerase [Haemophilus influenzae R3021]
Length = 452
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 112/213 (52%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 180
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + + L+P + + RL E
Sbjct: 181 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPISELAPLLKNIPPARLFDESLK 240
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P + Y +
Sbjct: 241 LLQAGQGVKTYRLLRQYGLFEQLFPALSPYFTE 273
>gi|429103854|ref|ZP_19165828.1| Poly(A) polymerase [Cronobacter turicensis 564]
gi|426290503|emb|CCJ91941.1| Poly(A) polymerase [Cronobacter turicensis 564]
Length = 448
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 55 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEESES 114
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG+ D
Sbjct: 115 DRATSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGLND 168
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ + ++ + T ++ED R+LRA+R AARL R S ET + L+ + + RL
Sbjct: 169 LNEGIIRLIGDPETRYREDPVRMLRAVRFAARLDMRISPETGEPIPRLATLLNDVPPARL 228
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G A+ RLL ++ L + L P + Y + G
Sbjct: 229 FEESLKLLQAGYGYATYRLLCEYNLFQPLFPGISRYFTEKG 269
>gi|68248614|ref|YP_247726.1| poly polymerase [Haemophilus influenzae 86-028NP]
gi|68056813|gb|AAX87066.1| probable poly polymerase [Haemophilus influenzae 86-028NP]
Length = 452
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 180
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 181 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 240
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++ L E L P +AY +
Sbjct: 241 LLQAGQGVKTYRLLRQYSLFEQLFPALSAYFTE 273
>gi|400405256|ref|YP_006588115.1| poly(A) polymerase [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|400363619|gb|AFP84687.1| poly(A) polymerase [secondary endosymbiont of Ctenarytaina
eucalypti]
Length = 457
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 13/263 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C +VG+RF + HV F + I+EV++F G
Sbjct: 85 LLGKKPKDFDITTNATPEQMRKLFRNCRLVGRRFRLAHVMFGSEIIEVATFR--GHHQVL 142
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL--------QRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ K E D + N +RDF++N L + + DY GG++D+
Sbjct: 143 EAKGESVVAALTDHNGMLLRDNIFGSIEEDAERRDFSVNSLYYSLADFTLRDYTGGLKDL 202
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
R+ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + + RLL
Sbjct: 203 REGTLRLIGDPETRYREDPVRMLRAVRFAAKLKMSISHETAEPIPRLAALLRDIPPARLL 262
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
+ +L G +AS RLL ++ L++ L P+ + +HG + +++ + +N D+
Sbjct: 263 EKALKLLQAGYGQASYRLLREYQLVQPLFPLISRNFTEHG---KSYMEHMVTRVLANTDQ 319
Query: 233 LLAPDRPCHSSLWIAILAFHKAL 255
+ + +L A + ++ L
Sbjct: 320 CFHNNMQINPALLFAAMLWYPLL 342
>gi|378822167|ref|ZP_09844987.1| poly(A) polymerase [Sutterella parvirubra YIT 11816]
gi|378599012|gb|EHY32080.1| poly(A) polymerase [Sutterella parvirubra YIT 11816]
Length = 479
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 111/209 (53%), Gaps = 5/209 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L PKDFD+ T A +EV R + I+G+RF + HV F ++E S+F + G
Sbjct: 69 LLGVSPKDFDVATDATPEEVKRAQRRAVIIGRRFRLVHVMFGTEVIECSTFRALEGAGVR 128
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+D + D W + +RDFTIN L +DP + ++DY G EDI +++
Sbjct: 129 KDAAGR----VVSDNVFGEMWEDAARRDFTINALYYDPATEELFDYHQGFEDIEARRLRM 184
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ ++ED R++RA+RIAA+LGFR R T + + ++ + RL+ E+ +
Sbjct: 185 IGVPEERYREDPVRMMRAVRIAAKLGFRIERATERPIPKMGKLLMNVPSARLVDELLKLF 244
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
G A A L+ L + GL + +LP+ + L
Sbjct: 245 TCGHAVACLKKLREEGLDKAILPVLSVVL 273
>gi|271501655|ref|YP_003334681.1| poly(A) polymerase [Dickeya dadantii Ech586]
gi|270345210|gb|ACZ77975.1| poly(A) polymerase [Dickeya dadantii Ech586]
Length = 467
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 146/314 (46%), Gaps = 31/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + PKDFDI T+A ++V ++F C +VG+RF + HV F ++EV++F
Sbjct: 73 LLGKKPKDFDITTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEVIEVATFRGHHEQHQE 132
Query: 52 --STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
+ + + + + G E+D R RDFTIN L + + DY G+
Sbjct: 133 QETKNAAQQGHNGMLLRDNIFGTIEEDAQR------RDFTINSLYYSIADFTVRDYTNGL 186
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
D+R+ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + +
Sbjct: 187 NDLRQGLIRLIGDPETRYREDPVRMLRAVRFAAKLGMRISAETAEPIPRLASLLHDIPPA 246
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSN 229
RL E +L G + +LL ++ L + L P+ + Y +G +++ + N
Sbjct: 247 RLFEESLKLLQAGHGYPTYQLLCEYQLFQPLFPLISRYFTANG---ESTMERMIVQVLKN 303
Query: 230 LDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
D+ + D + + + + ++ PLV L +G EA +A +N
Sbjct: 304 TDQRIQNDMRVNPAFLFSAMLWY---------PLVEHAQKLTQESGLAYFEAFALA--MN 352
Query: 290 KSHDESFCELLEPR 303
DE L P+
Sbjct: 353 DVLDEQCRSLAIPK 366
>gi|398845147|ref|ZP_10602191.1| poly(A) polymerase [Pseudomonas sp. GM84]
gi|398253860|gb|EJN38973.1| poly(A) polymerase [Pseudomonas sp. GM84]
Length = 462
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 122/266 (45%), Gaps = 34/266 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD+ TSA ++V F I+G+RF + HVHF I+EV++F
Sbjct: 67 MLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHVHFGREIIEVATFRAHHSEDDQ 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ SGR RD Y G E+D R RDFTIN L +DP ++ +
Sbjct: 127 GDSHRSSHNASGR-ILRDNVY------GSLEEDAQR------RDFTINALYYDPVSERVL 173
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 174 DYANGVHDIRNRLLRLIGDPTHRYQEDPVRMLRAVRFAAKLDFGIEKHTFKPIRELAPML 233
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E + G + +L L E L P A L + R L+
Sbjct: 234 REIPPARLFEECLKLFLSGQGAIAFEMLVDLELFEPLFPASAQALEE----RPTYTHTLI 289
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAIL 249
+N D + +P + A L
Sbjct: 290 SQALNNTDLRVKQGKPVTPAFLFAAL 315
>gi|153003178|ref|YP_001377503.1| poly(A) polymerase [Anaeromyxobacter sp. Fw109-5]
gi|152026751|gb|ABS24519.1| poly(A) polymerase [Anaeromyxobacter sp. Fw109-5]
Length = 548
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 109/209 (52%), Gaps = 1/209 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFEN-TIVEVSSFSTSGRRFS 59
+L PKDFD+ T A EV +F C ++G+RF + HV+F ++EV++F +
Sbjct: 80 LLGAKPKDFDVATDAHPGEVRAIFRNCRLIGRRFRLAHVYFRGGKVIEVATFRKNPVDVG 139
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
D + I D + ++RDFT+NGL +D + DY+GG ED+ ++ T
Sbjct: 140 EDVPDTDDLLITRDNVFGTAEEDAVRRDFTVNGLFYDVATGEVIDYVGGREDLEARRIAT 199
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ +ED R+LRA+R AARLGF + +T ++ + + + R+L E+ +L
Sbjct: 200 IGDPEIRMREDPVRLLRAVRFAARLGFIIAPDTFEAMRRHASELARCAPARVLEEIFKIL 259
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
G + + LL G L V+LP AA L
Sbjct: 260 RCGGSARAFELLRASGALPVILPALAAAL 288
>gi|345429911|ref|YP_004823030.1| poly(A) polymerase [Haemophilus parainfluenzae T3T1]
gi|301155973|emb|CBW15443.1| poly(A) polymerase I [Haemophilus parainfluenzae T3T1]
Length = 419
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 112/213 (52%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A ++ VF QC +VG+RF + H+ F ++EV++F S S R
Sbjct: 31 LLGKHPKDFDVATNARPDQIQAVFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHSDAR 90
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 91 SENQAKQSDEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFNGIDDLKNGKL 150
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR++R A+L + + ++ L+P + + RL E
Sbjct: 151 RLIGDPVTRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 210
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G+ + +LL ++GL E L P Y +
Sbjct: 211 LLQSGNGVKTYKLLRQYGLFEQLFPSLTPYFTE 243
>gi|398997937|ref|ZP_10700738.1| poly(A) polymerase [Pseudomonas sp. GM21]
gi|398122420|gb|EJM12013.1| poly(A) polymerase [Pseudomonas sp. GM21]
Length = 466
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSALPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|334123400|ref|ZP_08497425.1| polyA polymerase family protein [Enterobacter hormaechei ATCC
49162]
gi|333390609|gb|EGK61741.1| polyA polymerase family protein [Enterobacter hormaechei ATCC
49162]
Length = 454
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 62 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGVN 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLKDGLI 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S ETA + L+ I + RL E
Sbjct: 182 RLIGTPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLINDVPPARLFEESLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + LL ++ L + L P Y ++G
Sbjct: 242 LLQAGYGFETYNLLREYNLFQPLFPTITRYFTENG 276
>gi|218703399|ref|YP_002410918.1| poly(A) polymerase I [Escherichia coli UMN026]
gi|218430496|emb|CAR11362.1| poly(A) polymerase I [Escherichia coli UMN026]
Length = 472
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYNLLCEYHLFQPLFPTITRYFTENG 294
>gi|398872251|ref|ZP_10627551.1| poly(A) polymerase [Pseudomonas sp. GM74]
gi|398203594|gb|EJM90413.1| poly(A) polymerase [Pseudomonas sp. GM74]
Length = 466
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKHSALPIRGLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|398922426|ref|ZP_10660264.1| poly(A) polymerase [Pseudomonas sp. GM49]
gi|398162793|gb|EJM50975.1| poly(A) polymerase [Pseudomonas sp. GM49]
Length = 466
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKHSALPIRGLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|229846983|ref|ZP_04467089.1| probable poly polymerase [Haemophilus influenzae 7P49H1]
gi|229810067|gb|EEP45787.1| probable poly polymerase [Haemophilus influenzae 7P49H1]
Length = 452
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 15/219 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 120
Query: 58 FSRDFKYEFERPI------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
K E + G E+D +R RDFT+N L ++P + DY GI+D
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAVR------RDFTVNALYYNPQDNTLRDYFEGIKD 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + T +QED R+LR+IR A+L + + ++ L+P + + RL
Sbjct: 175 LKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + RLL ++ L E L P ++Y +
Sbjct: 235 FDESLKLLQAGQGVKTYRLLRQYSLFEQLFPALSSYFTE 273
>gi|384419115|ref|YP_005628475.1| poly(A) polymerase [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462028|gb|AEQ96307.1| poly(A) polymerase [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 455
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 138/298 (46%), Gaps = 27/298 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ TSA +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATSATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+A++L F TA + L+ + + RL E+ +
Sbjct: 186 GDPELRYQEDPVRMLRAVRLASKLNFEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L ++GL L P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVASFEGLERYGLFGALFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL---AFHKALSD------QPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
+ A+L AF + L QP D A + ++ LE V + RR +
Sbjct: 303 SPAFLFALLLWPAFCRTLMGLQAQGVQPEDAQRRAADRVTLHQ----LERVALPRRFS 356
>gi|30248100|ref|NP_840170.1| poly A polymerase family protein [Nitrosomonas europaea ATCC 19718]
gi|30179985|emb|CAD83980.1| Poly A polymerase family [Nitrosomonas europaea ATCC 19718]
Length = 460
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 130/267 (48%), Gaps = 23/267 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+D+ T+A +EV VF I+G+RF + HV + IVEVS+F
Sbjct: 68 LLGLKPKDYDVATNATPEEVRAVFRHSRIIGRRFRLVHVISKGEIVEVSTFRGKMADDLV 127
Query: 52 STSGRRFSRDFKYEF--ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
T + + D + G E+D R RDFTIN L +DP + I DY+ G
Sbjct: 128 ETEDVQANTDATGRLLHDNVFGSQEEDVRR------RDFTINALFYDPATEEILDYLDGF 181
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
ED+ +++ + ++ED R+LRA+R++A+LG + TA + L+P +L +
Sbjct: 182 EDVMAKRLRIIGEPEQRYREDPVRMLRAVRLSAKLGIQIDDRTAAPIGDLAPLLLNVPPA 241
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSN 229
RL EM +L G A A++ L GL LLP+ L + R + + N
Sbjct: 242 RLFDEMLKLLFSGHALAAVIDLRARGLHHGLLPMLDVILEQPLGER------FISLVLKN 295
Query: 230 LDKLLAPDRPCHSSLWIAILAFHKALS 256
D+ + D+P A L +H+ L+
Sbjct: 296 TDERVRQDKPVSPGFLFAALLWHEVLA 322
>gi|260596566|ref|YP_003209137.1| poly(A) polymerase I [Cronobacter turicensis z3032]
gi|260215743|emb|CBA28132.1| Poly(A) polymerase [Cronobacter turicensis z3032]
Length = 479
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 114/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 86 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEESES 145
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG+ D
Sbjct: 146 DRATSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGLND 199
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ + ++ + T ++ED R+LRA+R AARL R S ET + L+ + + RL
Sbjct: 200 LNEGIIRLIGDPETRYREDPVRMLRAVRFAARLDMRISPETGEPIPRLATLLNDVPPARL 259
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G A+ RLL ++ L + L P + Y + G
Sbjct: 260 FEESLKLLQAGYGYATYRLLCEYNLFQPLFPGISRYFTEKG 300
>gi|422023611|ref|ZP_16370115.1| poly(A) polymerase I [Providencia sneebia DSM 19967]
gi|414092539|gb|EKT54215.1| poly(A) polymerase I [Providencia sneebia DSM 19967]
Length = 495
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/274 (26%), Positives = 135/274 (49%), Gaps = 25/274 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFS-------T 53
+L + PKDFDI T+A +++ ++F C +VG+RF + H+ F ++EV++F T
Sbjct: 102 LLGKKPKDFDITTNATPEQIRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHDQSIT 161
Query: 54 SGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+ S+ + + G E+D IR RDFT+N L ++ + DY+ G++
Sbjct: 162 EDKNLSQQAQNGMLLRDNIFGSIEEDAIR------RDFTVNSLYYNIDDFSVRDYVDGLK 215
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D++ ++ + T ++ED R+LRA+R A +L R +TA +K L+P + ++ R
Sbjct: 216 DLKDGIIRLIGDPETRYREDPVRMLRAVRFACKLDMRIEPKTAQPIKQLAPLLREIPSAR 275
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L E +L G A+ ++L ++ L E L P + ++ ++ + N
Sbjct: 276 LFEESLKLLQAGQGYATYKMLKEYHLFEQLFPTIS---IRFTLNNDSPMEKIIEQVLKNT 332
Query: 231 DKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
D L +RP + + LW + + LS +
Sbjct: 333 DFRLKNERPVNPAFLFAAMLWYPVTEHAEKLSQE 366
>gi|374314910|ref|YP_005061338.1| tRNA nucleotidyltransferase/poly(A) polymerase [Sphaerochaeta
pleomorpha str. Grapes]
gi|359350554|gb|AEV28328.1| tRNA nucleotidyltransferase/poly(A) polymerase [Sphaerochaeta
pleomorpha str. Grapes]
Length = 418
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 105/207 (50%), Gaps = 11/207 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
ML +PKDFDI TSA +++ R+F I+GKRF + H+ F+ I+EVS+F +
Sbjct: 61 MLGNVPKDFDIATSASPRQIQRLFWNARIIGKRFKLVHLVFKEKILEVSTFRSGEEAMDG 120
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
+ G ++D R RDF+IN FDP + D+ +ED +K K+ ++
Sbjct: 121 NNNV-----FGSIDQDAKR------RDFSINSFYFDPSTAQLLDFNNAMEDFKKKKISSI 169
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
IP SF+ED R++RAI+ + GF ++ + + + RL E+N +L
Sbjct: 170 IPLDDSFKEDPVRMIRAIKYSVSTGFSLRFNVRMAIRKYANELSRTSTSRLTEEVNKILG 229
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAY 207
G + L K+ LL +LP + Y
Sbjct: 230 SGHSREIFNDLQKYKLLVFMLPCFSVY 256
>gi|419956603|ref|ZP_14472670.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae GS1]
gi|388608360|gb|EIM37563.1| poly(A) polymerase I [Enterobacter cloacae subsp. cloacae GS1]
Length = 447
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 55 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGVN 114
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 115 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLKDGLI 174
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S ETA + L+ I + RL E
Sbjct: 175 RLIGTPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLINDVPPARLFEESLK 234
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + LL ++ L + L P Y ++G
Sbjct: 235 LLQAGYGFETYNLLREYNLFQPLFPTITRYFTENG 269
>gi|300113450|ref|YP_003760025.1| poly(A) polymerase [Nitrosococcus watsonii C-113]
gi|299539387|gb|ADJ27704.1| poly(A) polymerase [Nitrosococcus watsonii C-113]
Length = 428
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/255 (29%), Positives = 126/255 (49%), Gaps = 14/255 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR-FS 59
+L R PKDFD+ T A +++ +F C +VG+RF + H+ F I+E ++F S
Sbjct: 50 LLGREPKDFDVTTDARPEQIRDLFRSCRLVGRRFRLAHLRFGREIIETATFRGPPEEGLS 109
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + + G E+D WR RDF++N L +D + DY GG+ED+ +++
Sbjct: 110 ENGRIVSDNVYGTLEQDA--WR----RDFSVNALYYDIRDFSVVDYTGGMEDLEAGRLRL 163
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ T ++ED R+LRA+R AA+LGF ++ + L+ S+ ++ RL E+ +
Sbjct: 164 IGDPVTRYREDPVRMLRAVRFAAKLGFTLHADSEAPIWELASSLQEIPSARLFEEILKLF 223
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYL--VKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
G A + LL +F L + L P + L + GF R L SN D +A
Sbjct: 224 LGGCAVQTFELLRRFNLFQWLFPQTESCLEEEEQGFPR-----IFLAQALSNTDARIAAG 278
Query: 238 RPCHSSLWIAILAFH 252
+P + A L +
Sbjct: 279 KPVTPAFLFAALLWE 293
>gi|115374966|ref|ZP_01462237.1| poly(A) polymerase [Stigmatella aurantiaca DW4/3-1]
gi|310820531|ref|YP_003952889.1| poly(a) polymerase [Stigmatella aurantiaca DW4/3-1]
gi|115367993|gb|EAU66957.1| poly(A) polymerase [Stigmatella aurantiaca DW4/3-1]
gi|309393603|gb|ADO71062.1| Poly(A) polymerase [Stigmatella aurantiaca DW4/3-1]
Length = 576
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 126/265 (47%), Gaps = 28/265 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFEN-TIVEVSSF-------- 51
+L R PKDFD+ TSA EV F C ++G+RF + HV+F+ I+EVS+F
Sbjct: 140 LLGRRPKDFDVATSAHPGEVRATFRNCRLIGRRFRLAHVYFKGGKIIEVSTFRANPLEME 199
Query: 52 ------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDY 105
+ +G D + G E+D R RDFTINGL +D + DY
Sbjct: 200 APEEEGAENGNGNGDDLLITHDNVFGTAEQDARR------RDFTINGLFYDVTEGRVIDY 253
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
+ G D+ + ++T+ +ED RILRA+R A++LG T ++ + +
Sbjct: 254 VRGRRDLDERYIRTIGDPEIRMREDPVRILRAVRFASKLGLDIESRTYAAMEGAVEDLPR 313
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
RLL E ++ G A SL+LL L++LLP AYL RR + S
Sbjct: 314 CAPARLLEETFRLIRGGVAAPSLKLLSALDALKILLPPVDAYL------RRSRESERTFY 367
Query: 226 LFSN-LDKLLAPDRPCHSSLWIAIL 249
F+ LD+ +A P ++ +A L
Sbjct: 368 AFAEALDRRVATGEPLDDAILLATL 392
>gi|387812966|ref|YP_005428443.1| poly(A) polymerase [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381337973|emb|CCG94020.1| poly(A) polymerase I. Polymerase that creates the 3' poly(A) tail
found in some mRNA's. Seems to be involved in plasmid
copy number control. Interacts with csdA, rhlE and srmB
[Marinobacter hydrocarbonoclasticus ATCC 49840]
Length = 455
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/317 (29%), Positives = 144/317 (45%), Gaps = 42/317 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS- 59
+L PKDFDI T+A +EV +F ++G+RF I HV F I+EV++F + R
Sbjct: 70 LLGGQPKDFDIATNATPEEVHDLFRNSRLIGRRFRIVHVVFGREIIEVTTFRGNARDTDD 129
Query: 60 ----------------RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
RD Y G E+D L+RDFTIN L + I
Sbjct: 130 DLADDEHKTSEHGLLLRDNVY------GNQEED------ALRRDFTINALYYCIRDFSII 177
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
D+ G++D++ +++ + T ++ED R+LRAIR AA+L F ET ++ L+P +
Sbjct: 178 DFANGVQDLKNRQIRLIGDPETRYREDPVRMLRAIRFAAKLDFEIEPETEAPIRELAPLL 237
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + + G EA+ RLL +GLL L P + A + G + L+
Sbjct: 238 AHIPPARLFDEVLKLFSAGHGEATYRLLQDYGLLAPLFP-ETARALDAG-----EPDELI 291
Query: 224 LSLFSNLDKLLAPDRPCH------SSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGD 277
L N D +A + + LW A+ + D DP+ A+ G
Sbjct: 292 LQALRNTDARIAQGKSVTPYFLFAAMLWPALQVEWRRRQDN-GDPVQPALHGAIGKVIGR 350
Query: 278 MLEAVKIARRINKSHDE 294
++A I +R + E
Sbjct: 351 QVQATAIPKRFSGPMKE 367
>gi|294626060|ref|ZP_06704669.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664385|ref|ZP_06729745.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599662|gb|EFF43790.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605849|gb|EFF49140.1| polynucleotide adenyltransferase [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 455
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 138/298 (46%), Gaps = 27/298 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATDATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 186 GDPQLRYQEDPVRMLRAVRLAAKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L ++GLL L P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVASFEGLERYGLLSALFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL---AFHKALSD------QPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
+ A+L AF + L QP D A + ++ LE V + RR +
Sbjct: 303 SPAFLFALLLWPAFCRTLMGLQAQGVQPEDAQRRAADRVTLHQ----LERVALPRRFS 356
>gi|325578734|ref|ZP_08148781.1| polyA polymerase family protein [Haemophilus parainfluenzae ATCC
33392]
gi|325159558|gb|EGC71690.1| polyA polymerase family protein [Haemophilus parainfluenzae ATCC
33392]
Length = 430
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 112/213 (52%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A ++ VF QC +VG+RF + H+ F ++EV++F S S R
Sbjct: 42 LLGKHPKDFDVATNARPDQIQAVFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHSDAR 101
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 102 SENQAKQSDEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFNGIDDLKNGKL 161
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR++R A+L + + ++ L+P + + RL E
Sbjct: 162 RLIGDPVTRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 221
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G+ + +LL ++GL E L P Y +
Sbjct: 222 LLQSGNGVKTYKLLRQYGLFEQLFPSLTPYFTE 254
>gi|183600088|ref|ZP_02961581.1| hypothetical protein PROSTU_03620 [Providencia stuartii ATCC 25827]
gi|386742410|ref|YP_006215589.1| poly(A) polymerase I [Providencia stuartii MRSN 2154]
gi|188022373|gb|EDU60413.1| poly(A) polymerase [Providencia stuartii ATCC 25827]
gi|384479103|gb|AFH92898.1| poly(A) polymerase I [Providencia stuartii MRSN 2154]
Length = 523
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 132/262 (50%), Gaps = 19/262 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C +VG+RF + H+ F ++EV++F +
Sbjct: 127 LLGKKPKDFDITTNATPEQIRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHDQIES 186
Query: 61 DFKYEFERP----------IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+ K ++ G E+D IR RDFT+N L ++ + DY+GG+
Sbjct: 187 EDKNRSQQAKNGMLLRDNIFGSIEEDAIR------RDFTVNSLYYNIDDFSVRDYVGGLN 240
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D++ ++ + T ++ED R+LRA+R A +L R TA ++ L+P + ++ R
Sbjct: 241 DLKAGIIRLIGDPETRYREDPVRMLRAVRFACKLDMRIEPNTAQPIQRLAPLLREIPSAR 300
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L E +L G A+ +L ++ L E L P+ ++ + +K ++ + N
Sbjct: 301 LFEESLKLLQAGQGYATYNMLKEYHLFEQLFPVISSRFTNNNDSPMEK---IIDQVLKNT 357
Query: 231 DKLLAPDRPCHSSLWIAILAFH 252
D L D+ + + A++ ++
Sbjct: 358 DFRLKNDKRVNPAFLFAVMLWY 379
>gi|145642144|ref|ZP_01797713.1| polyA polymerase [Haemophilus influenzae R3021]
gi|145273135|gb|EDK13012.1| polyA polymerase [Haemophilus influenzae 22.4-21]
Length = 509
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 112/213 (52%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGR--R 57
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + R
Sbjct: 118 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHNDAR 177
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 178 NENQAKQSNEGMLLRDNVYGTIEQDAARRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 237
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 238 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 297
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P + Y +
Sbjct: 298 LLQAGQGVKTYRLLRQYGLFEQLFPALSPYFTE 330
>gi|421749082|ref|ZP_16186581.1| poly(A) polymerase [Cupriavidus necator HPC(L)]
gi|409772111|gb|EKN54214.1| poly(A) polymerase [Cupriavidus necator HPC(L)]
Length = 501
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 129/273 (47%), Gaps = 29/273 (10%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST-------- 53
PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 75 PKDFDVATNATPEQVQALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVDAVASE 134
Query: 54 ---SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPYAKIIY 103
GRR R D K G +D + W + +RDFTIN + +DP + ++
Sbjct: 135 TLPEGRRLKRAELDNKTHAIDASGRVLRDNV-WGSQAEDAERRDFTINAMYYDPAEQTVH 193
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ED+R ++ + T ++ED R+LR +R AA+ GF T + L+ I
Sbjct: 194 DYHHGMEDMRARTLRMIGDPVTRYREDPVRMLRVVRFAAKTGFDIDEATRQPIADLASLI 253
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL EM +L G A ASL+ L K GL + LLP+ + + +R +
Sbjct: 254 HNVPSARLFDEMLKLLMSGHAWASLQELRKAGLHKGLLPLLDVAIEQPLGQR------FV 307
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
N D+ + +P A L +H L
Sbjct: 308 QLALDNTDRRVQAGKPVSPGFLFAALLWHHVLQ 340
>gi|398851535|ref|ZP_10608219.1| poly(A) polymerase [Pseudomonas sp. GM80]
gi|398246625|gb|EJN32108.1| poly(A) polymerase [Pseudomonas sp. GM80]
Length = 467
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 122/266 (45%), Gaps = 33/266 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPVNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 DEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHTVQPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E+ + G + +L L L P A L + + L+
Sbjct: 235 REIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFPASADALEHNP----EYTHTLI 290
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAIL 249
+N D + ++P + A L
Sbjct: 291 SEALTNTDLRIKQNKPVTPAFLFAAL 316
>gi|374334582|ref|YP_005091269.1| poly(A) polymerase [Oceanimonas sp. GK1]
gi|372984269|gb|AEY00519.1| poly(A) polymerase [Oceanimonas sp. GK1]
Length = 448
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 135/259 (52%), Gaps = 20/259 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------ST 53
+L R PKDFD+ TSA ++V +FS C +VG+RF + HV F ++EV++F +T
Sbjct: 47 LLGRQPKDFDVATSATPEQVKGLFSNCRLVGRRFRLAHVLFGRDVIEVATFRGHHHSVNT 106
Query: 54 SGRRFSRDFKYEFERP--IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
S + SR + R G E+D R RDFT+N L ++ ++ + GG++D
Sbjct: 107 SKQLSSRSKEGMLLRDNVYGTIEEDAER------RDFTVNALYYNIADFTVHGFAGGLKD 160
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ +++ + T ++ED R+LRA+R +A+LG S T ++ L+P + + RL
Sbjct: 161 LEARRLELIGDPETRYREDPVRMLRAVRFSAKLGLSISPRTEAPIRELAPLLTDIPAARL 220
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + R L +GL L P +AA ++ G R + L L +N D
Sbjct: 221 FEETLKLLLAGQGVETYRQLQHYGLFAPLFP-EAAEVMGRGNNRYGRFIELAL---ANTD 276
Query: 232 KLLAPD-RPCHSSLWIAIL 249
+ +A D R + L+ A+L
Sbjct: 277 ERIAQDLRVTPAFLYAALL 295
>gi|398991493|ref|ZP_10694623.1| poly(A) polymerase [Pseudomonas sp. GM24]
gi|399011845|ref|ZP_10714175.1| poly(A) polymerase [Pseudomonas sp. GM16]
gi|398117429|gb|EJM07181.1| poly(A) polymerase [Pseudomonas sp. GM16]
gi|398139772|gb|EJM28766.1| poly(A) polymerase [Pseudomonas sp. GM24]
Length = 467
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 122/266 (45%), Gaps = 33/266 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPVNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 DEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHTVQPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E+ + G + +L L L P A L + + L+
Sbjct: 235 REIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFPASADALEHNP----EYTHTLI 290
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAIL 249
+N D + ++P + A L
Sbjct: 291 SEALTNTDLRIKQNKPVTPAFLFAAL 316
>gi|398964739|ref|ZP_10680516.1| poly(A) polymerase [Pseudomonas sp. GM30]
gi|398148125|gb|EJM36813.1| poly(A) polymerase [Pseudomonas sp. GM30]
Length = 466
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 122/266 (45%), Gaps = 33/266 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPVNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 DEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHTVQPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E+ + G + +L L L P A L + + L+
Sbjct: 235 REIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFPASADALEHNP----EYTHTLI 290
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAIL 249
+N D + ++P + A L
Sbjct: 291 SEALTNTDLRIKQNKPVTPAFLFAAL 316
>gi|386332544|ref|YP_006028713.1| polynucleotide adenylyltransferase [Ralstonia solanacearum Po82]
gi|334194992|gb|AEG68177.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
Po82]
Length = 516
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 150/330 (45%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L+ PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 95 LLSIKPKDFDVATNATPEQVQALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 154
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 155 AVESEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 213
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LRA+R AA+ GF T +
Sbjct: 214 DQTVHDYHHGMEDMRARLLRMIGDPHTRYREDPVRMLRAVRFAAKTGFDIEPATRAPIAE 273
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + R
Sbjct: 274 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHSGLLPLLDVALEQPMGER--- 330
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D+ + +P A L +H L R +PL+ A+ +
Sbjct: 331 ---FVQLALDNTDERVKAGKPVSPGFLFASLLWHHVLEHWNRRRAAGEPLIPALHTAMDE 387
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 388 VLDRQTEQLAIQRRFTADMKEIWS--MQPR 415
>gi|417840842|ref|ZP_12486950.1| Putative polyA polymerase [Haemophilus haemolyticus M19501]
gi|341950653|gb|EGT77240.1| Putative polyA polymerase [Haemophilus haemolyticus M19501]
Length = 452
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 114/219 (52%), Gaps = 15/219 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF-------- 51
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F
Sbjct: 61 LLGKKPKDFDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAL 120
Query: 52 STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ + + S + + G E+D R RDFT+N L ++P + DY GI+D
Sbjct: 121 NENQAKQSNEGMLLRDNVYGTIEQDAER------RDFTVNALYYNPQDNTLRDYFDGIQD 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + T +QED R+LR+IR A+L + + ++ L+P + + RL
Sbjct: 175 LKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELTPLLKNIPPARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + RLL ++GL E L P + Y +
Sbjct: 235 FDESLKLLQAGQGVKTYRLLRQYGLFEQLFPALSPYFTE 273
>gi|77461030|ref|YP_350537.1| poly(A) polymerase [Pseudomonas fluorescens Pf0-1]
gi|398981005|ref|ZP_10689237.1| poly(A) polymerase [Pseudomonas sp. GM25]
gi|77385033|gb|ABA76546.1| putative polynucleotide adenylyltransferase [Pseudomonas
fluorescens Pf0-1]
gi|398134036|gb|EJM23212.1| poly(A) polymerase [Pseudomonas sp. GM25]
Length = 466
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 122/266 (45%), Gaps = 33/266 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 DEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHTVQPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E+ + G + +L L L P A L + + L+
Sbjct: 235 REIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFPASADALEHNP----EYTHTLI 290
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAIL 249
+N D + ++P + A L
Sbjct: 291 SEALTNTDLRIKQNKPVTPAFLFAAL 316
>gi|399001373|ref|ZP_10704088.1| poly(A) polymerase [Pseudomonas sp. GM18]
gi|398127789|gb|EJM17193.1| poly(A) polymerase [Pseudomonas sp. GM18]
Length = 466
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSALPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|398896300|ref|ZP_10647429.1| poly(A) polymerase [Pseudomonas sp. GM55]
gi|398178560|gb|EJM66205.1| poly(A) polymerase [Pseudomonas sp. GM55]
Length = 466
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSALPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|398931624|ref|ZP_10665267.1| poly(A) polymerase [Pseudomonas sp. GM48]
gi|398163231|gb|EJM51399.1| poly(A) polymerase [Pseudomonas sp. GM48]
Length = 466
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSALPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|407368603|ref|ZP_11115135.1| poly(A) polymerase [Pseudomonas mandelii JR-1]
Length = 466
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNDE 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSALPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|429084597|ref|ZP_19147597.1| Poly(A) polymerase [Cronobacter condimenti 1330]
gi|426546284|emb|CCJ73638.1| Poly(A) polymerase [Cronobacter condimenti 1330]
Length = 448
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 55 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEETAN 114
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG+ D+ +
Sbjct: 115 DRATSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGLNDLNDGII 174
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S ET + L+ + + RL E
Sbjct: 175 RLIGDPETRYREDPVRMLRAVRFAAKLDMRISPETGEPIPRLATLLNDVPPARLFEESLK 234
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G A+ RLL ++ L + L P + Y ++G
Sbjct: 235 LLQAGYGYATYRLLCEYNLFQPLFPGISRYFTENG 269
>gi|289665247|ref|ZP_06486828.1| polynucleotide adenyltransferase [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 455
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 138/298 (46%), Gaps = 27/298 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ TSA +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATSATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 186 GDPELRYQEDPVRMLRAVRLAAKLDFEIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G +S L ++GL L P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVSSFEGLERYGLFGALFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL---AFHKALSD------QPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
+ A+L AF + L QP D A + ++ LE V + RR +
Sbjct: 303 SPAFLFALLLWPAFCRTLMGLQAQGVQPEDAQRRAADRVTLHQ----LERVALPRRFS 356
>gi|426411527|ref|YP_007031626.1| Poly(A) polymerase, PcnB [Pseudomonas sp. UW4]
gi|426269744|gb|AFY21821.1| Poly(A) polymerase, PcnB [Pseudomonas sp. UW4]
Length = 466
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSALPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|398949258|ref|ZP_10673172.1| poly(A) polymerase [Pseudomonas sp. GM33]
gi|398159489|gb|EJM47789.1| poly(A) polymerase [Pseudomonas sp. GM33]
Length = 466
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHSALPIRDLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
++ RL E+ + G A + +L L + L P A L
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 279
>gi|429091597|ref|ZP_19154264.1| Poly(A) polymerase [Cronobacter dublinensis 1210]
gi|429096471|ref|ZP_19158577.1| Poly(A) polymerase [Cronobacter dublinensis 582]
gi|426282811|emb|CCJ84690.1| Poly(A) polymerase [Cronobacter dublinensis 582]
gi|426743793|emb|CCJ80377.1| Poly(A) polymerase [Cronobacter dublinensis 1210]
Length = 447
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 129/264 (48%), Gaps = 18/264 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFDI T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 55 LLGKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEESVS 114
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG+ D
Sbjct: 115 DRATSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGLND 168
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + T ++ED R+LRA+R AA+L R S ET + L+ + + RL
Sbjct: 169 LNDGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMRISPETGEPIPRLATLLNDVPPARL 228
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G A+ RLL ++ L + L P + Y + G ++ ++ + N D
Sbjct: 229 FEESLKLLQAGYGYATYRLLCEYNLFQPLFPGISRYFTEKGDSPMER---IITQVLKNTD 285
Query: 232 KLLAPDRPCHSSLWIAILAFHKAL 255
+ D + + A + ++ L
Sbjct: 286 NRIHNDMRVNPAFLFAAMYWYPQL 309
>gi|424924943|ref|ZP_18348304.1| poly(A) polymerase [Pseudomonas fluorescens R124]
gi|404306103|gb|EJZ60065.1| poly(A) polymerase [Pseudomonas fluorescens R124]
Length = 466
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 122/266 (45%), Gaps = 33/266 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPVNED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP ++ I
Sbjct: 127 DEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + +QED R+LRA+R AA+L F + T ++ L+P +
Sbjct: 175 DYANGVHDIRNHLIRLIGDPKQRYQEDPVRMLRAVRFAAKLNFGIEKHTVQPIRELAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E+ + G + +L L L P A L + + L+
Sbjct: 235 REIPSARLFEEVLKLFLSGHGAITFEMLVDLQLFAPLFPASADALEHNP----EYTHTLI 290
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAIL 249
+N D + ++P + A L
Sbjct: 291 SEALTNTDLRIKQNKPVTPAFLFAAL 316
>gi|21242528|ref|NP_642110.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
citri str. 306]
gi|381169527|ref|ZP_09878692.1| poly(A) polymerase [Xanthomonas citri pv. mangiferaeindicae LMG
941]
gi|390989160|ref|ZP_10259460.1| poly(A) polymerase [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|21107981|gb|AAM36646.1| polynucleotide adenyltransferase [Xanthomonas axonopodis pv. citri
str. 306]
gi|372556194|emb|CCF66435.1| poly(A) polymerase [Xanthomonas axonopodis pv. punicae str. LMG
859]
gi|380690117|emb|CCG35179.1| poly(A) polymerase [Xanthomonas citri pv. mangiferaeindicae LMG
941]
Length = 455
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 138/298 (46%), Gaps = 27/298 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATDATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 186 GDPQLRYQEDPVRMLRAVRLAAKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L ++GLL L P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVASFEGLERYGLLGALFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL---AFHKALSD------QPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
+ A+L AF + L QP D A + ++ LE V + RR +
Sbjct: 303 SPAFLFALLLWPAFCRTLMGLQAQGVQPEDAQRRAADRVTLHQ----LERVALPRRFS 356
>gi|418518583|ref|ZP_13084724.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|410703137|gb|EKQ61633.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 455
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 138/298 (46%), Gaps = 27/298 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATDATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RDFT N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDFTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 186 GDPQLRYQEDPVRMLRAVRLAAKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L ++GLL L P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVASFEGLERYGLLGALFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL---AFHKALSD------QPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
+ A+L AF + L QP D A + ++ LE V + RR +
Sbjct: 303 SPAFLFALLLWPAFCRTLMGLQAQGVQPEDAQRRAADRVTLHQ----LERVALPRRFS 356
>gi|392955062|ref|ZP_10320613.1| poly(A) polymerase [Hydrocarboniphaga effusa AP103]
gi|391857719|gb|EIT68250.1| poly(A) polymerase [Hydrocarboniphaga effusa AP103]
Length = 453
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 110/207 (53%), Gaps = 23/207 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF----------STSG 55
PKDFD+ T+A ++V +F C +VG+RF ICHV F + IVE ++F +G
Sbjct: 53 PKDFDVATNAHPEQVKPLFRSCRLVGRRFVICHVRFGDEIVETTTFRGPITDLHKRDETG 112
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
R S D +Y G E+D L+RDFTIN L +D I D+ GIED+++
Sbjct: 113 RILS-DNEY------GTLEQD------ALRRDFTINALYYDIRDFSIVDFTSGIEDMKQG 159
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + ++ED R+LRAIRIA +L FR TA + L+P + ++ RL E+
Sbjct: 160 VIRLIGDPELRYREDPVRMLRAIRIANKLRFRIDEATAAPIARLAPLLKEIPAARLFDEV 219
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLP 202
+L AE +L L +GL L P
Sbjct: 220 LKLLLSREAEDNLYGLRVYGLFRQLFP 246
>gi|386022036|ref|YP_005940061.1| poly(A) polymerase [Pseudomonas stutzeri DSM 4166]
gi|327482009|gb|AEA85319.1| poly(A) polymerase [Pseudomonas stutzeri DSM 4166]
Length = 463
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 132/287 (45%), Gaps = 41/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+D+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 67 LLQLNPKDYDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPEEDD 126
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP ++ I
Sbjct: 127 EDASQLALRNESGR-ILRDNVY------GTLEDDAQR------RDFTINALYYDPTSERI 173
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
D+ G+ DIR ++ + +QED R+LRA+R AA+L F R +A + L+
Sbjct: 174 LDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAKLDFEIERHSAEPIADLAEL 233
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+ + RL E + G AE + LL ++ L L P AA L ++ + L
Sbjct: 234 LDGIPSARLFDETLKLFLGGKAERTFELLLEYDLFAPLFPASAAALERNP----EYAGTL 289
Query: 223 LLSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+ + +N D + +P + LW A+ A L D+ P+
Sbjct: 290 IRNALANTDLRIQQGKPVTPAFLFAALLWPALPARVLELQDRGMPPI 336
>gi|421895698|ref|ZP_16326098.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
MolK2]
gi|206586863|emb|CAQ17448.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
MolK2]
Length = 516
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 149/330 (45%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 95 LLGIKPKDFDVATNATPEQVQALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 154
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 155 AVESEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 213
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LRA+R AA+ GF T +
Sbjct: 214 DQTVHDYHRGMEDMRARLLRMIGDPHTRYREDPVRMLRAVRFAAKTGFDIEPATRAPIAE 273
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + R
Sbjct: 274 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGER--- 330
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D+ + +P A L +H L R +PL+ A+ +
Sbjct: 331 ---FVQLALDNTDERVKAGKPVSPGFLFASLLWHHVLEHWNRRRAAGEPLIPALHTAMDE 387
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 388 VLDRQTEQLAIQRRFTADMKEIWS--MQPR 415
>gi|161504691|ref|YP_001571803.1| poly(A) polymerase I [Salmonella enterica subsp. arizonae serovar
62:z4,z23:- str. RSK2980]
gi|160866038|gb|ABX22661.1| hypothetical protein SARI_02813 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 472
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISSETAEPIPRLAALLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGNGFETYQQLREYNLFQPLFPTITRYFTENG 294
>gi|146283614|ref|YP_001173767.1| poly(A) polymerase [Pseudomonas stutzeri A1501]
gi|145571819|gb|ABP80925.1| poly(A) polymerase [Pseudomonas stutzeri A1501]
Length = 466
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 132/287 (45%), Gaps = 41/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+D+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 70 LLQLNPKDYDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPEEDD 129
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP ++ I
Sbjct: 130 EDASQLASRNESGR-ILRDNVY------GTLEDDAQR------RDFTINALYYDPTSERI 176
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
D+ G+ DIR ++ + +QED R+LRA+R AA+L F R +A + L+
Sbjct: 177 LDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAKLDFEIERHSAEPIADLAEL 236
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+ + RL E + G AE + LL ++ L L P AA L ++ + L
Sbjct: 237 LDGIPSARLFDETLKLFLGGKAERTFELLLEYDLFAPLFPASAAALERNP----EYAGTL 292
Query: 223 LLSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+ + +N D + +P + LW A+ A L D+ P+
Sbjct: 293 IRNALANTDLRIQQGKPVTPAFLFAALLWPALPARVLELQDRGMPPI 339
>gi|410631566|ref|ZP_11342241.1| poly(A) polymerase [Glaciecola arctica BSs20135]
gi|410149012|dbj|GAC19108.1| poly(A) polymerase [Glaciecola arctica BSs20135]
Length = 447
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +++ +F C ++G+RF + H+ F I+EV++F R
Sbjct: 58 LLGKEPKDFDVTTNATPEQIKGLFRNCRLIGRRFRLAHIVFGREIIEVATF-----RGHH 112
Query: 61 DFKYEFERPIG--CDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ E E + D +R + +RDFTIN + ++ I D+ GG++
Sbjct: 113 ENNDEGESKVSKHSDHGQLLRDNVFGSIEEDAQRRDFTINAMYYNIADYSISDFAGGMQA 172
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
I+ ++ + T ++ED R+LRA+R AA+L S E+A +K L+P + + RL
Sbjct: 173 IKDKSIRLIGDPETRYREDPVRMLRAVRFAAKLDMHISEESAEPIKRLAPLMANIPAARL 232
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFR 214
E+ +L G A+ +LL +F L E L P A L++ G R
Sbjct: 233 FEEILKLLLSGQGLATYKLLAEFHLFEALFPQLAPLLLQPGSR 275
>gi|374704276|ref|ZP_09711146.1| poly(A) polymerase [Pseudomonas sp. S9]
Length = 468
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 111/228 (48%), Gaps = 29/228 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTS------ 54
+L+ PKDFD+ TSA ++V F ++G+RF + HVHF I+EV++F +
Sbjct: 67 LLDVEPKDFDVSTSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPQGDE 126
Query: 55 -----------GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
R RD Y G E D R RDFTIN L +DP + I
Sbjct: 127 EENSNLSSRNENGRILRDNVY------GNLEDDAQR------RDFTINALYYDPSNERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G DIR V+ + + +QED R+LRAIR AA+L F + +A + L+P +
Sbjct: 175 DYANGAHDIRNNLVRLIGDPTQRYQEDPVRMLRAIRFAAKLDFDIEKHSAAPIYKLAPLL 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
++ RL E+ + G A + LL +GL L P AA L ++
Sbjct: 235 NEIPSARLFDEVLKLFLAGYAVYTYELLVDYGLFGQLFPASAAALKQN 282
>gi|254282332|ref|ZP_04957300.1| poly(A) polymerase [gamma proteobacterium NOR51-B]
gi|219678535|gb|EED34884.1| poly(A) polymerase [gamma proteobacterium NOR51-B]
Length = 432
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 129/263 (49%), Gaps = 17/263 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T+A +++ VF I+G+RF I HV F I+EV+++
Sbjct: 45 LLGGQPKDFDVGTNATPEQIKAVFKNARIIGRRFQIVHVRFGPEIIEVTTYRGHHASGSA 104
Query: 52 STSGRRFSRDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGG 108
SG+ + + G +D + + +RD TIN L +DP + + D + G
Sbjct: 105 PASGKDSGNTKAHSRQSDKGLLLRDNVYGTLEEDAARRDLTINALYYDPEDESVLDQLNG 164
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D+ V+ + T ++ED R+LR +R AA+L F ET H + +P + ++
Sbjct: 165 MADVEARLVRVIGEPHTRYREDPVRMLRVLRFAAKLQFDVESETDHAIAECAPLLAEIPS 224
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E + G A + +LL+++GLL L P + ++ H R + L+++
Sbjct: 225 ARLFDEFLKLFMAGYATPTFKLLYRYGLLHHLFP-EPTRVLAHEARHYE----LVVAAME 279
Query: 229 NLDKLLAPDRPCHSSLWIAILAF 251
+ D+ + DRP + +A + +
Sbjct: 280 STDRRVREDRPVTPAFLLAAIMW 302
>gi|83748968|ref|ZP_00945977.1| poly(a) polymerase / tRNA nucleotidyltransferase [Ralstonia
solanacearum UW551]
gi|207744197|ref|YP_002260589.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
IPO1609]
gi|83724391|gb|EAP71560.1| poly(a) polymerase / tRNA nucleotidyltransferase [Ralstonia
solanacearum UW551]
gi|206595602|emb|CAQ62529.1| polynucleotide adenylyltransferase protein [Ralstonia solanacearum
IPO1609]
Length = 516
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 149/330 (45%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 95 LLGIKPKDFDVATNATPEQVQALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 154
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 155 AVESEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 213
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LRA+R AA+ GF T +
Sbjct: 214 DQTVHDYHRGMEDMRARLLRMIGDPHTRYREDPVRMLRAVRFAAKTGFDIEPATRAPIAE 273
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + R
Sbjct: 274 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGER--- 330
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D+ + +P A L +H L R +PL+ A+ +
Sbjct: 331 ---FVQLALDNTDERVKAGKPVSPGFLFASLLWHHVLEHWNRRRAAGEPLIPALHTAMDE 387
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 388 VLDRQTEQLAIQRRFTADMKEIWS--MQPR 415
>gi|409396325|ref|ZP_11247328.1| poly(A) polymerase [Pseudomonas sp. Chol1]
gi|419954451|ref|ZP_14470589.1| poly(A) polymerase [Pseudomonas stutzeri TS44]
gi|387968784|gb|EIK53071.1| poly(A) polymerase [Pseudomonas stutzeri TS44]
gi|409119102|gb|EKM95489.1| poly(A) polymerase [Pseudomonas sp. Chol1]
Length = 461
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 128/272 (47%), Gaps = 20/272 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKD+D+ TSA ++V F ++G+RF + HVHF I+EV++F + D + E
Sbjct: 72 PKDYDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRAN--HPEEDDEEE 129
Query: 66 FERPIGCDEKDFIRWRN--------CLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+E I N +RDFTIN L +DP ++ I D+ G+ DIR +
Sbjct: 130 ASHLAARNESGRILRDNVYGTLDDDAQRRDFTINALYYDPTSERILDHTHGVHDIRNRLI 189
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LRA+R AA+L F R +A + L+ + + RL E
Sbjct: 190 RLIGDPEQRYQEDPVRMLRAVRFAAKLDFEIERHSAEPIAELADLLDGIPSARLFDETLK 249
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G AE + LL ++ L L P AA L ++ + L+ + +N D +
Sbjct: 250 LFLGGKAERTFELLLEYDLFAPLFPASAAALERNP----EYAGTLIRNALANTDLRIQQG 305
Query: 238 RPCHSS------LWIAILAFHKALSDQPRDPL 263
+P + LW A+ A L D+ P+
Sbjct: 306 KPVTPAFLFAALLWPALPARVLELQDRGMPPI 337
>gi|394988100|ref|ZP_10380938.1| hypothetical protein SCD_00502 [Sulfuricella denitrificans skB26]
gi|393792558|dbj|GAB70577.1| hypothetical protein SCD_00502 [Sulfuricella denitrificans skB26]
Length = 457
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 131/259 (50%), Gaps = 10/259 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFD+ T A+ EV +F + I+G+RF I HV +EVS+F T +
Sbjct: 64 LLGREPKDFDVATDADPDEVRHLFRRSRIIGRRFRIVHVMCGPETIEVSTFRTVAVATNN 123
Query: 61 DFK-YEFERPIGCDEKDFI---RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
D + ++ G +D + + + ++RDFTIN L +DP ++ I+DY G+ D++
Sbjct: 124 DSDDRQTDQQSGRILRDNVFGSQVEDAMRRDFTINALYYDPVSQEIWDYHNGVADLKAGV 183
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + + ++ED R+LRA+R AA+LG + ++ L+ + + RL EM
Sbjct: 184 MRIIGDPAQRYREDPVRMLRAVRFAAKLGLKLDPAAIKPIRELAELLEDVPAARLFDEML 243
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L G A S+ LL K GL LLP+ L + R ++ + D+ +
Sbjct: 244 KLLFSGHAVQSILLLRKKGLHHGLLPMLDVILEQPMGER------FVMLALAKTDQRIEE 297
Query: 237 DRPCHSSLWIAILAFHKAL 255
+P + A L +H+ L
Sbjct: 298 GKPVSPAYLFAALLWHEVL 316
>gi|320536493|ref|ZP_08036527.1| poly(A) polymerase [Treponema phagedenis F0421]
gi|320146702|gb|EFW38284.1| poly(A) polymerase [Treponema phagedenis F0421]
Length = 399
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 44/246 (17%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L RIPKDFDI TSAE ++ ++F I+GKRF + H+ + I E+S+F + G
Sbjct: 61 LLGRIPKDFDIATSAEPSKIKKLFRNSRIIGKRFRLVHIFYGPKIYEISTFRSIEDGSVG 120
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+F G E+D R RDFTIN L +DP +I DY+GG+ D+RK
Sbjct: 121 NKF------------GTIEEDVQR------RDFTINALYYDPIKNLIIDYVGGLHDLRKN 162
Query: 116 KVQTVIPASTSFQEDCARILRAIRIA----ARLGF----RFSRETAHFVKHLSPSILKLD 167
+++ +IP F ED R+LRAI+ + A++ F R R+T+ +++ SPS
Sbjct: 163 RLRAIIPLKNIFSEDPVRMLRAIKYSILAKAKIPFLLSCRLHRDTS-LLEYCSPS----- 216
Query: 168 RGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF 227
RL E+N + G ++ + L + L L P +++ + K + LS F
Sbjct: 217 --RLTEELNKIFHSGYSKPIIERLLHYELFLYLQPSAYSFI-----QDNTKFAECFLSGF 269
Query: 228 SNLDKL 233
LD L
Sbjct: 270 EELDSL 275
>gi|240947943|ref|ZP_04752370.1| putative poly(A) polymerase [Actinobacillus minor NM305]
gi|240297737|gb|EER48196.1| putative poly(A) polymerase [Actinobacillus minor NM305]
Length = 399
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 110/207 (53%), Gaps = 5/207 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFDI T+A +EV ++F QC +VG+RF + H+ F I EV++F +
Sbjct: 2 LLGKNPKDFDISTNARPEEVQKIFGRQCRLVGRRFRLAHIVFGREIYEVATFRAGHENHT 61
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
D K G +D + + +RDF++N +DP +IYD+ G+ED+ K
Sbjct: 62 ND-KISKISDAGMLLRDNVYGTMREDAERRDFSVNAFYYDPRHNLIYDFFNGLEDLNAGK 120
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + +QED R+LRAIR A+L R TA +K ++P + + RL E
Sbjct: 121 LRLLGNPVQRYQEDPVRMLRAIRFMAKLDMFLDRATADPIKEMAPLLKMIPAARLFDESL 180
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPI 203
+L G+ + +LL ++ L E L P+
Sbjct: 181 KLLQSGAGLKTYQLLREYHLFEPLFPV 207
>gi|258623057|ref|ZP_05718070.1| Poly(A) polymerase [Vibrio mimicus VM573]
gi|424809571|ref|ZP_18234948.1| polyA polymerase [Vibrio mimicus SX-4]
gi|449146593|ref|ZP_21777366.1| poly(A) polymerase [Vibrio mimicus CAIM 602]
gi|258584670|gb|EEW09406.1| Poly(A) polymerase [Vibrio mimicus VM573]
gi|342323059|gb|EGU18845.1| polyA polymerase [Vibrio mimicus SX-4]
gi|449077825|gb|EMB48786.1| poly(A) polymerase [Vibrio mimicus CAIM 602]
Length = 457
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++HL+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAEPIEHLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|424864520|ref|ZP_18288423.1| poly(A) polymerase [SAR86 cluster bacterium SAR86B]
gi|400759266|gb|EJP73448.1| poly(A) polymerase [SAR86 cluster bacterium SAR86B]
Length = 408
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 111/209 (53%), Gaps = 9/209 (4%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T+A +V R+F I+G+RF + H++ N ++E+++F S D
Sbjct: 41 PKDFDVATNATPDQVRRIFKSSRIIGRRFKLVHLYSHNELIEIATFRAGKNSLSGDQNLV 100
Query: 66 FERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVI 121
+ +G +D + W +C +RDFT+N L + P +K I D+ G+ DIRK ++ ++
Sbjct: 101 TDN-LGKIIRDNV-WGSINEDCQRRDFTVNALYYCPISKEIKDFNNGLLDIRKKRIVSIG 158
Query: 122 PASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAY 181
F+ED R LRAIR + +LGF+ H + + + RL EM + +
Sbjct: 159 DPLQRFEEDPVRSLRAIRFSTKLGFKLDTHIKHAIYDKGHLLFGVSNARLFDEMCKLFLH 218
Query: 182 GSAEASLRLLWKFGLLEVLL---PIQAAY 207
GSAE + L KF LL+ L+ P Q+ +
Sbjct: 219 GSAEKNFLKLHKFNLLKYLVHTNPDQSNF 247
>gi|381180877|ref|ZP_09889714.1| poly(A) polymerase [Treponema saccharophilum DSM 2985]
gi|380767233|gb|EIC01235.1| poly(A) polymerase [Treponema saccharophilum DSM 2985]
Length = 355
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 112/216 (51%), Gaps = 29/216 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
++ + PKDFDI+T A ++ R+F I+GKRF + HV F I EVS+F S +
Sbjct: 48 LVGKSPKDFDIVTDATPSKIKRLFRNSRIIGKRFRLVHVFFGEKIFEVSTFRSVASGSVG 107
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
DF G ++D R RDFT N L +DP + + DY+GG+EDIRK ++
Sbjct: 108 NDF--------GTMDEDVQR------RDFTANALYYDPIKEQVVDYVGGVEDIRKKVLRP 153
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFS-------RETAHFVKHLSPSILKLDRGRLL 172
VIP F++D R+LRAI+ A+ LG R R++AH + +SPS RL
Sbjct: 154 VIPLEHIFEDDPVRMLRAIKYASSLGCRMPHSLRSRIRKSAHLLSAVSPS-------RLT 206
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
E+ ++ G + + L +F + L P A +
Sbjct: 207 EELMKIVNSGHSFEIVTLALEFDVFMYLQPSACAMM 242
>gi|417515384|ref|ZP_12178942.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
gi|353655441|gb|EHC96451.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Uganda str. R8-3404]
Length = 454
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 276
>gi|308050920|ref|YP_003914486.1| poly(A) polymerase [Ferrimonas balearica DSM 9799]
gi|307633110|gb|ADN77412.1| poly(A) polymerase [Ferrimonas balearica DSM 9799]
Length = 449
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 141/290 (48%), Gaps = 30/290 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L+ PKDFD+ T+A +++ ++F C +VG+RF + H+ F I+EV++
Sbjct: 63 LLSHQPKDFDVATNATPEQIRKLFRNCRLVGRRFRLAHILFGRDIIEVATLRGHHAESSD 122
Query: 52 ----STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIG 107
+ R RD Y G ++D R RDFT+NGL +D + DY G
Sbjct: 123 KHARADDSGRLLRDNVY------GSIDEDAER------RDFTVNGLYYDIADYSVRDYFG 170
Query: 108 GIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLD 167
G+ D++ +++ + T ++ED R+LRA+R A +L F +T + L+ + +
Sbjct: 171 GMADLKARRLRLIGDPETRYREDPVRMLRAVRFATKLDFTIDTQTGKPIPALAELLSDIP 230
Query: 168 RGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF 227
RL E + G A + RL+ ++GL + P+Q L + + K L+ ++
Sbjct: 231 AARLFEESLKLFLAGKALDNFRLMREYGLFAPMFPMQEKLLQQD---KDGKVLALIEAMM 287
Query: 228 SNLDKLLAPDRPCHSSLWIAILAFH--KALSDQPRDPLVVAVFSLAVYNG 275
N D+ +A D+P + A L ++ + L+ + RD V +L +G
Sbjct: 288 KNTDQRVAADKPVTPAFIYAALLWYVVEDLAQRRRDRGVAEYDALTAASG 337
>gi|417402091|ref|ZP_12157550.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
gi|353629203|gb|EHC77064.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Mississippi str. A4-633]
Length = 464
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 276
>gi|258627266|ref|ZP_05722052.1| Poly(A) polymerase [Vibrio mimicus VM603]
gi|258580449|gb|EEW05412.1| Poly(A) polymerase [Vibrio mimicus VM603]
Length = 457
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++HL+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAEPIEHLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|422017114|ref|ZP_16363682.1| poly(A) polymerase I [Providencia alcalifaciens Dmel2]
gi|414105819|gb|EKT67373.1| poly(A) polymerase I [Providencia alcalifaciens Dmel2]
Length = 444
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 133/255 (52%), Gaps = 6/255 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C +VG+RF + H+ F I+EV++F +
Sbjct: 51 LLGQKPKDFDITTNATPEQIRKLFRNCRLVGRRFRLAHIMFGPEIIEVATFRGHHDQEVD 110
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D + G +D I + ++RDFT+N L ++ + DY+ G++D++ +
Sbjct: 111 DKNLSSQAQNGMLLRDNIFGSIEEDAIRRDFTVNSLYYNIDDFSVRDYVNGLQDLKDGVI 170
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R++RA+R A +L R +TA + L+P + ++ RL E
Sbjct: 171 RLIGDPETRYREDPVRMIRAVRFACKLNMRIEPKTAEPIHRLAPLLGEIPSARLFEESLK 230
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G A+ ++L ++ L E L P+ A+ ++G +K ++ + N D L D
Sbjct: 231 LLQAGYGYATYKMLNQYHLFEQLFPVIASRFTENGDSPMEK---IIEQVLKNTDFRLKND 287
Query: 238 RPCHSSLWIAILAFH 252
+ + + A + ++
Sbjct: 288 KRVNPAFLFAAMLWY 302
>gi|429334479|ref|ZP_19215142.1| poly(A) polymerase [Pseudomonas putida CSV86]
gi|428760821|gb|EKX83072.1| poly(A) polymerase [Pseudomonas putida CSV86]
Length = 462
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 16/218 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ TSA +++ F I+G+RF + HVHF I+EV++F +
Sbjct: 67 LLGITPKDFDVATSATPEQIRAEFRNARIIGRRFKLVHVHFGREIIEVATFRANHPTDEE 126
Query: 61 DFKYEFERP----------IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+ ++ R G E D R RDFTIN L +DP ++ I DY G+
Sbjct: 127 ENSHQSSRNESGRILRDNVYGTLEDDAQR------RDFTINALYYDPVSERILDYANGVH 180
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+R V+ + + +QED R+LRA+R AA+L F + T ++ L+P + ++ R
Sbjct: 181 DVRNRLVRLIGDPTQRYQEDPVRMLRAVRFAAKLNFGIEKHTVLPIRELAPMLREIPAAR 240
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
L E + G A + +L L + L P A L
Sbjct: 241 LFEESLKLFLSGHAADTFEMLVDLQLFDPLFPASAEAL 278
>gi|322812373|pdb|3AQL|A Chain A, Structure Of Bacterial Protein (Apo Form Ii)
gi|322812374|pdb|3AQL|B Chain B, Structure Of Bacterial Protein (Apo Form Ii)
gi|322812377|pdb|3AQN|A Chain A, Complex Structure Of Bacterial Protein (Apo Form Ii)
gi|322812378|pdb|3AQN|B Chain B, Complex Structure Of Bacterial Protein (Apo Form Ii)
Length = 415
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 46 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 105
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 106 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 159
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + L
Sbjct: 160 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHL 219
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 220 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 260
>gi|261212292|ref|ZP_05926578.1| poly(A) polymerase [Vibrio sp. RC341]
gi|260838900|gb|EEX65551.1| poly(A) polymerase [Vibrio sp. RC341]
Length = 457
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++HL+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAEPIEHLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|393777714|ref|ZP_10366005.1| poly polymerase [Ralstonia sp. PBA]
gi|392715511|gb|EIZ03094.1| poly polymerase [Ralstonia sp. PBA]
Length = 487
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 130/277 (46%), Gaps = 29/277 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A +V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 69 LLGIKPKDFDVATNATPDQVQALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRAMVD 128
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
S RR R D + G +D + W + +RDFTIN + +DP
Sbjct: 129 AADSEQVASDRRLKRNELDTRTHATDASGRVLRDNV-WGSQAEDAARRDFTINAMYYDPA 187
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
A+ ++DY GG++DIR ++ + + ++ED R+LR +R AA+ GF T +
Sbjct: 188 AQTVHDYHGGMKDIRARVLRMIGDPTLRYREDPVRMLRVVRFAAKTGFAIDEATRAPINE 247
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L+ I + R+ EM +L G A ASL+ L K GL LLP+ L + +R
Sbjct: 248 LATLIHNVPTARVFDEMLKLLLSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGQR--- 304
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKAL 255
+ N D + +P A L +H L
Sbjct: 305 ---FVQLALDNTDARVRAGKPVSPGFLFAALLWHHVL 338
>gi|322812372|pdb|3AQK|A Chain A, Structure Of Bacterial Protein (Apo Form I)
Length = 414
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 45 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + L
Sbjct: 159 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPAHL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 259
>gi|357417043|ref|YP_004930063.1| polynucleotide adenylyltransferase [Pseudoxanthomonas spadix
BD-a59]
gi|355334621|gb|AER56022.1| polynucleotide adenylyltransferase [Pseudoxanthomonas spadix
BD-a59]
Length = 417
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 131/264 (49%), Gaps = 18/264 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
++ + PKDFD+ T A +++ + F C ++G+RF + HV F I+EV++F +
Sbjct: 23 LVGQHPKDFDVATDATPEQIKQQFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSG 82
Query: 55 GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
R D + + G E D IR RDFT N L + + DY GG ED+
Sbjct: 83 DRETHEDGRLLRDNVYGSIEDDAIR------RDFTANALYYAIEDFSVRDYCGGFEDVMA 136
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
+++ + ++ED R+LRA+R+AA+LGF TA + L+P + + RL E
Sbjct: 137 RRLRLIGDPEQRYREDPVRMLRAVRLAAKLGFTIDGPTADPIPVLAPLLAEAAPARLFEE 196
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLL 234
+ + G+A AS + L GLL VLLP AA L + R +LL + D +
Sbjct: 197 ILKLFLSGNAVASFQGLEHSGLLPVLLPESAAALQSN---RSGALRAMLLEGLAGTDARV 253
Query: 235 APDRPCHSSLWIAIL---AFHKAL 255
A D P + A+L A+ KAL
Sbjct: 254 ANDEPVSPAFLFALLLWPAYCKAL 277
>gi|421616605|ref|ZP_16057608.1| poly(A) polymerase [Pseudomonas stutzeri KOS6]
gi|409781357|gb|EKN60957.1| poly(A) polymerase [Pseudomonas stutzeri KOS6]
Length = 464
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 41/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+D+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 67 LLQLNPKDYDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPEEDD 126
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP ++ I
Sbjct: 127 DDASHLASRNESGR-ILRDNIY------GTLEDDAQR------RDFTINALYYDPTSERI 173
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
D+ G+ DIR ++ + +QED R+LRA+R AA+L F R +A + L+
Sbjct: 174 LDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAKLDFEIERHSAEPIIDLADL 233
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+ + RL E+ + G AE + LL ++ L L P AA L ++ + L
Sbjct: 234 LGGIPSARLFDEVLKLFLGGKAERTFELLLEYDLFAPLFPASAAALERNP----EYAGTL 289
Query: 223 LLSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+ + +N D + +P + LW A+ A L D+ P+
Sbjct: 290 IRNALANTDLRIQQGKPVTPAFLFAALLWPALPARILELQDRGMPPI 336
>gi|300703163|ref|YP_003744765.1| poly(a) polymerase i [Ralstonia solanacearum CFBP2957]
gi|299070826|emb|CBJ42123.1| poly(A) polymerase I [Ralstonia solanacearum CFBP2957]
Length = 519
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 149/330 (45%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 95 LLGIKPKDFDVATNATPEQVQVLFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 154
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 155 AVESEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 213
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LRA+R AA+ GF T +
Sbjct: 214 DQTVHDYHRGMEDMRARLLRMIGDPHTRYREDPVRMLRAVRFAAKTGFGIEPATRAPIAE 273
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + R
Sbjct: 274 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGER--- 330
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D+ + +P A L +H L R +PL+ A+ +
Sbjct: 331 ---FVQLALDNTDERVKAGKPVSPGFLFASLLWHHVLEHWNRRRAAGEPLIPALHTAMDE 387
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 388 VLDRQTEQLAIQRRFTADMKEIWS--MQPR 415
>gi|262163987|ref|ZP_06031726.1| poly(A) polymerase [Vibrio mimicus VM223]
gi|262027515|gb|EEY46181.1| poly(A) polymerase [Vibrio mimicus VM223]
Length = 413
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 19 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQ 78
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 79 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 138
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++HL+P + + RL E
Sbjct: 139 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAEPIEHLAPLLRDIPAARLYEESLK 198
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 199 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 230
>gi|56412460|ref|YP_149535.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197361396|ref|YP_002141031.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|56126717|gb|AAV76223.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197092871|emb|CAR58297.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 472
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|419845957|ref|ZP_14369217.1| polynucleotide adenylyltransferase [Haemophilus parainfluenzae
HK2019]
gi|386414738|gb|EIJ29285.1| polynucleotide adenylyltransferase [Haemophilus parainfluenzae
HK2019]
Length = 438
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A ++ VF QC +VG+RF + H+ F ++EV++F + S R
Sbjct: 50 LLGKHPKDFDVATNARPDQIQAVFQRQCRLVGRRFRLAHIMFGRDVIEVATFRANHSDAR 109
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 110 SENQAKQSDEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFNGIDDLKNGKL 169
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR++R A+L + + ++ L+P + + RL E
Sbjct: 170 RLIGDPVTRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 229
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G+ + +LL ++GL E L P Y +
Sbjct: 230 LLQSGNGVKTYKLLRQYGLFEQLFPSLTPYFTE 262
>gi|345297915|ref|YP_004827273.1| poly(A) polymerase [Enterobacter asburiae LF7a]
gi|345091852|gb|AEN63488.1| poly(A) polymerase [Enterobacter asburiae LF7a]
Length = 454
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 114/223 (51%), Gaps = 19/223 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 62 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNPA 121
Query: 52 --STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
+TS R ++ + G E+D R RDFTIN L + + DY+GG+
Sbjct: 122 DRTTSQR--GQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGM 173
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
+D++ ++ + T ++ED R+LRA+R AA+L R S ET + L+ I +
Sbjct: 174 QDLKAGLIRLIGTPETRYREDPVRMLRAVRFAAKLNMRISPETGEPIPRLATLINDVPPA 233
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
RL E +L G + LL ++ L + L P Y ++G
Sbjct: 234 RLFEEALKLLQAGYGFETYNLLREYSLFQPLFPTITRYFTENG 276
>gi|293418032|ref|ZP_06660654.1| poly(A) polymerase [Escherichia coli B185]
gi|291430750|gb|EFF03748.1| poly(A) polymerase [Escherichia coli B185]
Length = 472
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG S ETA + L+ + + RL
Sbjct: 194 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMHISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 294
>gi|194471610|ref|ZP_03077594.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205358330|ref|ZP_03224002.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|194457974|gb|EDX46813.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|205335022|gb|EDZ21786.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
Length = 454
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGFETYQQLREYNLFQPLFPTITRYFTENG 276
>gi|421884764|ref|ZP_16315971.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
gi|379985715|emb|CCF88244.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Senftenberg str. SS209]
Length = 454
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGFETYQQLREYNLFQPLFPTITRYFTENG 276
>gi|437838690|ref|ZP_20846036.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
gi|435298203|gb|ELO74443.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SARB17]
Length = 472
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGNGFETYQQLREYNLFQPLFPTITRYFTENG 294
>gi|392419914|ref|YP_006456518.1| poly(A) polymerase [Pseudomonas stutzeri CCUG 29243]
gi|390982102|gb|AFM32095.1| poly(A) polymerase [Pseudomonas stutzeri CCUG 29243]
Length = 464
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 132/287 (45%), Gaps = 41/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+D+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 67 LLQLNPKDYDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPEEDD 126
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP + I
Sbjct: 127 DDASHLASRNESGR-ILRDNIY------GTLEDDAQR------RDFTINALYYDPTTERI 173
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
D+ G+ DIR ++ + +QED R+LRA+R AA+L F R +A + L+
Sbjct: 174 LDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAKLDFEIERHSAEPIVDLADL 233
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+ + RL E+ + G AE + LL ++ L L P AA L ++ + L
Sbjct: 234 LDGIPSARLFDEVLKLFLGGKAERTFELLLEYDLFAPLFPASAAALERNP----EYAGTL 289
Query: 223 LLSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+ + +N D + +P + LW A+ A L D+ P+
Sbjct: 290 IRNALANTDLRIQQGKPVTPAFLFAALLWPALPARVLELQDRGMPPI 336
>gi|419801304|ref|ZP_14326539.1| polynucleotide adenylyltransferase [Haemophilus parainfluenzae
HK262]
gi|385193868|gb|EIF41216.1| polynucleotide adenylyltransferase [Haemophilus parainfluenzae
HK262]
Length = 437
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A ++ VF QC +VG+RF + H+ F ++EV++F + S R
Sbjct: 50 LLGKHPKDFDVATNARPDQIQAVFQRQCRLVGRRFRLAHIMFGRDVIEVATFRANHSDAR 109
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 110 SENQAKQSDEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFNGIDDLKNGKL 169
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR++R A+L + + ++ L+P + + RL E
Sbjct: 170 RLIGDPVTRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 229
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G+ + +LL ++GL E L P Y +
Sbjct: 230 LLQSGNGVKTYKLLRQYGLFEQLFPSLTPYFTE 262
>gi|124268204|ref|YP_001022208.1| polynucleotide adenylyltransferase [Methylibium petroleiphilum PM1]
gi|124260979|gb|ABM95973.1| putative polynucleotide adenylyltransferase protein [Methylibium
petroleiphilum PM1]
Length = 535
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 138/282 (48%), Gaps = 29/282 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSF----- 51
ML PKDFD+ T+A ++V +F + I+G+RF I HV + E+ ++EVS+F
Sbjct: 76 MLGLRPKDFDVATNATPEQVKGLFRRAFIIGRRFRIVHVVYGRGREHEVIEVSTFRAYLD 135
Query: 52 -----STSGRRFSRDFKYEFERPIGCDEKDFIR---W----RNCLQRDFTINGLMFDPYA 99
+G + + + + +R W + +RDFT+N L +DP
Sbjct: 136 AAAAEQVAGNEKTSKAELSGKSHVVDASGRVLRDNVWGPQHEDAARRDFTVNALYYDPQT 195
Query: 100 KIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHL 159
+I+ DY GGI D +K ++ + T ++ED RI+R +R AA+LGF +T ++
Sbjct: 196 QIVVDYHGGIADAKKRLLRMIGDPVTRYREDPVRIIRVVRFAAKLGFEIEPKTRAPMRDC 255
Query: 160 SPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEV------LLPIQAAYLVKHGF 213
+ + + RL EM +L G A AS+ L K GLL + P+ A L G
Sbjct: 256 AALLEAVPISRLFDEMIKLLQTGHALASIAQLRKQGLLGAGPDAPGIFPLLDAVLADAG- 314
Query: 214 RRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKAL 255
R R+ + + ++ D+ + D+P S +A L +H+ L
Sbjct: 315 -RNPARAAFIDAALADTDRRVGEDKPVAPSFLLACLLWHEVL 355
>gi|375117617|ref|ZP_09762784.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
gi|326621884|gb|EGE28229.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SD3246]
Length = 454
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 276
>gi|262401705|ref|ZP_06078271.1| poly(A) polymerase [Vibrio sp. RC586]
gi|262352122|gb|EEZ01252.1| poly(A) polymerase [Vibrio sp. RC586]
Length = 457
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 111/212 (52%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++HL+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAEPIEHLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMREYNLFQQLFPTIAEHFT 274
>gi|198245984|ref|YP_002214141.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|197940500|gb|ACH77833.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
Length = 437
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 159 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 259
>gi|345869948|ref|ZP_08821903.1| poly(A) polymerase [Thiorhodococcus drewsii AZ1]
gi|343922335|gb|EGV33037.1| poly(A) polymerase [Thiorhodococcus drewsii AZ1]
Length = 437
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/308 (29%), Positives = 141/308 (45%), Gaps = 36/308 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSG----- 55
+L PKDFDI T A ++V +VF C ++G+RF + HVHF I+EV++F SG
Sbjct: 51 LLGHEPKDFDIATDATPEQVRQVFRNCRLIGRRFRLAHVHFGRDIIEVATFRGSGEEGDD 110
Query: 56 --RRFS-----RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
RR RD Y G E+D L+RDFTIN L +D + DY GG
Sbjct: 111 TDRRLENGMIVRDNSY------GSIEED------ALRRDFTINALYYDIADFSLIDYAGG 158
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
++D+R +V+ + ++ED R+LRA+R A +LGF T + L + +
Sbjct: 159 LDDLRAGRVRFIGDPDQRYREDPVRMLRAVRFACKLGFNIESATEAPLFTLGHLLHDIPA 218
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E+ +L G A L +GL L P A L + + ++ + +
Sbjct: 219 ARLFDELIKLLHSGYGLAVFEKLRHYGLFGHLFPATEACLTQ---QHQEFPLTFVSRGLA 275
Query: 229 NLDKLLAPDRPCHSSLWIAI-------LAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEA 281
N D L +P + AI LA+ + ++D + + S AV + D
Sbjct: 276 NTDLRLQEGKPTTPAFLFAIILWEPVRLAYERLVADGVAEADAIHAASSAVCS--DQQSL 333
Query: 282 VKIARRIN 289
V I +R +
Sbjct: 334 VAIPKRFS 341
>gi|307546716|ref|YP_003899195.1| poly(A) polymerase [Halomonas elongata DSM 2581]
gi|307218740|emb|CBV44010.1| poly(A) polymerase [Halomonas elongata DSM 2581]
Length = 488
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 17/256 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R+PKDFD+ T A EV +F I+G+RF I HV F ++EV++F
Sbjct: 97 LLGRMPKDFDVATDATPDEVRDLFRNSRIIGRRFRIVHVRFGREVIEVTTFRGKPNDDHG 156
Query: 61 DFKYEFERPIGCDEKDFIR---WRN----CLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D + D+ +R W N L+RDFTIN L ++ I+D+ G DI
Sbjct: 157 DHIAQ-----QSDDGMLLRDNVWGNIEEDALRRDFTINALYYNIADFSIHDFADGARDID 211
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + +T ++ED R+LRAIR AA+L F +R T ++ L+P +L++ RL
Sbjct: 212 ARTLRLIGDPATRYREDPVRMLRAIRFAAKLDFSLARATEEPIEELAPLLLQVPPARLFD 271
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G + +LL ++GL +L P F L+ ++ DK
Sbjct: 272 EVLKLFMAGHGVETFQLLREYGLFAMLFP-----EADEAFDELPWAEGLIEQALASTDKR 326
Query: 234 LAPDRPCHSSLWIAIL 249
+ +RP + A L
Sbjct: 327 VQEERPVTPAFLFAAL 342
>gi|110804198|ref|YP_687718.1| poly(A) polymerase [Shigella flexneri 5 str. 8401]
gi|424836665|ref|ZP_18261302.1| poly(A) polymerase I [Shigella flexneri 5a str. M90T]
gi|110613746|gb|ABF02413.1| poly(A) polymerase I [Shigella flexneri 5 str. 8401]
gi|383465717|gb|EID60738.1| poly(A) polymerase I [Shigella flexneri 5a str. M90T]
Length = 454
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLSMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|307132158|ref|YP_003884174.1| poly(A) polymerase I [Dickeya dadantii 3937]
gi|306529687|gb|ADM99617.1| poly(A) polymerase I [Dickeya dadantii 3937]
Length = 467
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 146/314 (46%), Gaps = 31/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + PKDFDI T+A ++V ++F C +VG+RF + HV F ++EV++F
Sbjct: 73 LLGKKPKDFDITTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEVIEVATFRGHHEQHQE 132
Query: 52 --STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
+ + + + + G E+D R RDF+IN L + + DY G+
Sbjct: 133 QETKNAAQQGHNGMLLRDNIFGTIEEDAQR------RDFSINSLYYSIADFTVRDYTNGL 186
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
D+R+ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + +
Sbjct: 187 NDLRQGLIRLIGEPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLASLLHDIPPA 246
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSN 229
RL E +L G + +LL ++ L + L P+ + Y +G +++ + N
Sbjct: 247 RLFEESLKLLQAGYGYPTYQLLCEYQLFQPLFPLISRYFTANG---ESTMERMIVQVLKN 303
Query: 230 LDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
D+ + D + + + + ++ PLV L +G EA +A +N
Sbjct: 304 TDQRIQNDMRVNPAFLFSAMLWY---------PLVEHAQKLTQESGLAYFEAFALA--MN 352
Query: 290 KSHDESFCELLEPR 303
DE L P+
Sbjct: 353 DVLDEQCRSLAIPK 366
>gi|410089648|ref|ZP_11286262.1| poly(A) polymerase [Pseudomonas viridiflava UASWS0038]
gi|409763183|gb|EKN48168.1| poly(A) polymerase [Pseudomonas viridiflava UASWS0038]
Length = 467
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 135/296 (45%), Gaps = 41/296 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
MLN PKDFD+ TSA ++V F I+G+RF + H+HF I+EV++F
Sbjct: 68 MLNITPKDFDVATSATPEQVRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDDE 127
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E+D R RDFTIN L +DP + +
Sbjct: 128 EEDSNQSSRNESGRILRDNVY------GTLEEDAQR------RDFTINALYYDPVTERVL 175
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + ++ED R+LRA+R AA+L F + +A ++ L+ +
Sbjct: 176 DYANGVHDIRNRLIRLIGDPEQRYKEDPVRMLRAVRFAAKLDFGIEKHSALPIRPLAAML 235
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G A ++ +L L E L P + L + SN L
Sbjct: 236 RDIPSARLFEEVLKLFLSGHAASTFEMLVDLELFEPLFPASSKALEYNPTYTHTLISNAL 295
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVY 273
+ N D + ++P + LW A+ A K L Q R +A A +
Sbjct: 296 I----NTDLRIKQNKPVTPAFLFAALLWPALPA--KVLRAQERGMPPIAAMQEAAH 345
>gi|197249173|ref|YP_002145185.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|200386557|ref|ZP_03213169.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|417363428|ref|ZP_12136641.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
gi|197212876|gb|ACH50273.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|199603655|gb|EDZ02200.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|353600340|gb|EHC56275.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Hvittingfoss str. A4-620]
Length = 454
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 276
>gi|423111418|ref|ZP_17099112.1| Poly(A) polymerase [Klebsiella oxytoca 10-5243]
gi|423112563|ref|ZP_17100254.1| Poly(A) polymerase [Klebsiella oxytoca 10-5245]
gi|376376617|gb|EHS89394.1| Poly(A) polymerase [Klebsiella oxytoca 10-5243]
gi|376390940|gb|EHT03622.1| Poly(A) polymerase [Klebsiella oxytoca 10-5245]
Length = 454
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 128/258 (49%), Gaps = 6/258 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 122 DRITSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVI 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+LG S ETA + L+ + + RL E+
Sbjct: 182 RLIGDPETRYREDPVRMLRAVRFAAKLGMSISEETAEPIPRLATLLHDVPPARLFEEVLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + LL ++ L + L P Y + G ++ ++ + N D + D
Sbjct: 242 LLQAGDGYQTYILLREYNLFQPLFPTITRYFTERGDSPMER---IISQVLKNTDNRIRND 298
Query: 238 RPCHSSLWIAILAFHKAL 255
+ + A++ ++ L
Sbjct: 299 MRVNPAFLFAVMFWYPLL 316
>gi|374584631|ref|ZP_09657723.1| poly(A) polymerase [Leptonema illini DSM 21528]
gi|373873492|gb|EHQ05486.1| poly(A) polymerase [Leptonema illini DSM 21528]
Length = 589
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 13/256 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFEN-TIVEVSSF-STSGRRF 58
+L + PKDFDI+T+A ++ ++FS ++G+RF + HV F ++EVS+F S R
Sbjct: 68 LLGKKPKDFDIVTNATPTQLRKLFSNSRVIGRRFKLVHVVFRGGKVIEVSTFRSLPEHRL 127
Query: 59 -----SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
S D + + G ++D R RDFTIN L FDP + I DY GG ED++
Sbjct: 128 DSSLESDDMYLKRDNIFGTPKEDVAR------RDFTINSLYFDPRNESIIDYTGGFEDMK 181
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + SF+ED R+LRA + A LGF A ++ I K + RLL
Sbjct: 182 NQRINVIGDPDISFKEDPVRMLRAAKFAPLLGFSMHSACAKGIRKNRFEIAKANSNRLLE 241
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E + G + +++ GLLE L+P A V+ L S D++
Sbjct: 242 EYFKIFRTGKSAKIFGSMYETGLLETLMPSAIAASVERAEPGVPFEDTPLGRRLSIADRM 301
Query: 234 LAPDRPCHSSLWIAIL 249
LA +++A+L
Sbjct: 302 LAEREDLTVDIYLALL 317
>gi|344167481|emb|CCA79710.1| poly(A) polymerase I [blood disease bacterium R229]
Length = 515
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 149/330 (45%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 95 LLGIQPKDFDVATNATPEQVEALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 154
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 155 AVESEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 213
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LR +R AA+ GF T +
Sbjct: 214 DQTVHDYHHGMEDMRARLLRMIGDPHTRYREDPVRMLRVVRFAAKTGFDIDPATRAPIAE 273
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + +R
Sbjct: 274 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHSGLLPLLDVALEQPMGQR--- 330
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D+ + +P A L +H L R +PL+ A+ +
Sbjct: 331 ---FVQLALDNTDERVKAGKPVSPGFLFASLMWHHVLEHWNRRRTAGEPLIPALHTAMDE 387
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 388 VLDRQTEQLAIQRRFTADMKEIWS--MQPR 415
>gi|408373067|ref|ZP_11170765.1| poly(A) polymerase [Alcanivorax hongdengensis A-11-3]
gi|407766905|gb|EKF75344.1| poly(A) polymerase [Alcanivorax hongdengensis A-11-3]
Length = 440
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 17/267 (6%)
Query: 3 NRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDF 62
R PKDFD+ T A ++V R+F + I+G+RF I HV F ++EVS+F R + D
Sbjct: 51 GRDPKDFDVATDATPEQVNRIFKRSRIIGRRFQIVHVRFGREVIEVSTF----RAMNTDD 106
Query: 63 KYEFERPIGCDEKDFI----RW----RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
+ ++ +E + W + L+RDFTIN L ++ ++D++G ++DI
Sbjct: 107 NPDKQQHHAHEETGLVLRDNTWGSIEEDALRRDFTINALYYNIADFTLHDFVGSVDDIDD 166
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
+ + ++ED R+LRA R AA+L F + +TA + ++ +L++ RL E
Sbjct: 167 RIIHLIGDPQQRYREDPVRMLRAARFAAKLDFDIAADTADPIPDMAELLLQVPPARLFDE 226
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLP-IQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
+ + G A S L + GL L P Q A + G ++LL+ N D
Sbjct: 227 VLKLFLSGHARQSYEQLQQLGLFAFLFPETQRALQGEQGA----IWESMLLAAMDNTDAR 282
Query: 234 LAPDRPCHSSLWIAILAFHKALSDQPR 260
LA ++P + A+L + S PR
Sbjct: 283 LARNKPVTPAFIYAVLLWPVIQSRLPR 309
>gi|209696020|ref|YP_002263950.1| poly(A) polymerase (plasmid copy number protein) [Aliivibrio
salmonicida LFI1238]
gi|208009973|emb|CAQ80291.1| poly(A) polymerase (plasmid copy number protein) [Aliivibrio
salmonicida LFI1238]
Length = 441
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 136/270 (50%), Gaps = 17/270 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F ++EV++F R +
Sbjct: 47 ILGQEPKDFDIATNATPEQIKKLFRNCRLIGRRFRLAHILFGRDVIEVATF----RGHHK 102
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
+ + E ++ I K+ + R+ + +RDFTIN + ++ I+DY GIED
Sbjct: 103 EEESE-KKNISSQSKEGMLLRDNVYGTVEEDAQRRDFTINAMYYNIADYSIHDYANGIED 161
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ V+ + T ++ED R+LRA+R AA+L +TA + LSP + + RL
Sbjct: 162 LKNGVVRLIGDPETRYREDPVRMLRAVRFAAKLDMTICNKTAEPMVELSPLLRDIPAARL 221
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS--- 228
E +L G + +L KF L + L P +L K G + ++ L+L
Sbjct: 222 FEESLKLLQAGKGLNTYLMLRKFNLFQQLFPALTPFLTKEGNSQTEQMIELVLHSTDKRI 281
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALSDQ 258
N + + P + LW + A K + ++
Sbjct: 282 NSGQRVNPAFMFAAMLWYPLTAQAKEIQNE 311
>gi|62178754|ref|YP_215171.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205351523|ref|YP_002225324.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207855700|ref|YP_002242351.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224582031|ref|YP_002635829.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|375113062|ref|ZP_09758232.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|375122299|ref|ZP_09767463.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|418816333|ref|ZP_13371825.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|418820947|ref|ZP_13376378.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|418855142|ref|ZP_13409802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|421356680|ref|ZP_15807000.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|421363116|ref|ZP_15813359.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|421366178|ref|ZP_15816383.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|421371096|ref|ZP_15821256.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|421374796|ref|ZP_15824917.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|421381906|ref|ZP_15831959.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|421386257|ref|ZP_15836271.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|421390992|ref|ZP_15840965.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|421394426|ref|ZP_15844366.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|421399218|ref|ZP_15849114.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|421403510|ref|ZP_15853355.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|421406745|ref|ZP_15856557.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|421413791|ref|ZP_15863541.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|421417208|ref|ZP_15866919.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|421422962|ref|ZP_15872626.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|421426174|ref|ZP_15875803.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|421431626|ref|ZP_15881208.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|421433619|ref|ZP_15883177.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|421439754|ref|ZP_15889235.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|421442976|ref|ZP_15892419.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|421448907|ref|ZP_15898292.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436718245|ref|ZP_20518928.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|436795869|ref|ZP_20522587.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|436806688|ref|ZP_20526843.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|436812885|ref|ZP_20531217.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|436831050|ref|ZP_20535760.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|436852340|ref|ZP_20542661.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|436855632|ref|ZP_20544790.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|436866131|ref|ZP_20551907.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|436870802|ref|ZP_20554437.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|436877085|ref|ZP_20558252.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|436887386|ref|ZP_20563723.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|436895252|ref|ZP_20568315.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|436902207|ref|ZP_20573036.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|436909095|ref|ZP_20575983.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|436916886|ref|ZP_20580545.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|436924140|ref|ZP_20585288.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|436933511|ref|ZP_20589718.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|436940224|ref|ZP_20594232.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|436952666|ref|ZP_20601238.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|436958812|ref|ZP_20603347.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|436972265|ref|ZP_20610267.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|436978632|ref|ZP_20612635.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|436993182|ref|ZP_20618169.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|437003397|ref|ZP_20621577.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|437021366|ref|ZP_20627827.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|437036749|ref|ZP_20634028.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|437040023|ref|ZP_20634468.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|437048594|ref|ZP_20639608.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|437060044|ref|ZP_20646207.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|437064448|ref|ZP_20648469.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|437073068|ref|ZP_20652878.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|437080801|ref|ZP_20657341.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|437093688|ref|ZP_20664005.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|437109140|ref|ZP_20667681.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|437120722|ref|ZP_20671496.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|437130396|ref|ZP_20676565.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|437138468|ref|ZP_20680992.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|437143064|ref|ZP_20684076.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|437152919|ref|ZP_20690171.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|437159494|ref|ZP_20693986.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|437171192|ref|ZP_20700487.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|437175063|ref|ZP_20702564.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|437186929|ref|ZP_20709816.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|437189794|ref|ZP_20710670.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|437260580|ref|ZP_20717701.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|437265603|ref|ZP_20720481.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|437280979|ref|ZP_20728260.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|437286867|ref|ZP_20730369.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|437317073|ref|ZP_20738011.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|437322716|ref|ZP_20738933.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437341207|ref|ZP_20744649.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|437351770|ref|ZP_20747601.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|437421143|ref|ZP_20754804.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|437451775|ref|ZP_20759462.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|437459165|ref|ZP_20761017.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|437474073|ref|ZP_20766092.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|437490116|ref|ZP_20770896.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|437509791|ref|ZP_20776772.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|437544378|ref|ZP_20782884.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|437554056|ref|ZP_20784273.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|437576486|ref|ZP_20790655.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|437596791|ref|ZP_20796406.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|437604254|ref|ZP_20798884.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|437615806|ref|ZP_20802384.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|437649684|ref|ZP_20809515.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|437659351|ref|ZP_20812178.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|437674303|ref|ZP_20816456.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|437689159|ref|ZP_20819969.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|437717326|ref|ZP_20828313.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|437728677|ref|ZP_20830557.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|437780666|ref|ZP_20836462.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|437800581|ref|ZP_20837957.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|437909943|ref|ZP_20850165.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|438012100|ref|ZP_20854532.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|438085682|ref|ZP_20858790.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|438098913|ref|ZP_20863035.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|438108219|ref|ZP_20866974.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|438144658|ref|ZP_20875651.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|440764693|ref|ZP_20943718.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
gi|440766256|ref|ZP_20945251.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|440773152|ref|ZP_20952052.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|445129669|ref|ZP_21380929.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|445176256|ref|ZP_21397574.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|445195180|ref|ZP_21400394.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|445235830|ref|ZP_21406971.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|445245406|ref|ZP_21408193.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445328854|ref|ZP_21413250.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|445352720|ref|ZP_21420727.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|445360293|ref|ZP_21423443.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|448967495|ref|YP_002039420.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|62126387|gb|AAX64090.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205271304|emb|CAR36095.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|206707503|emb|CAR31777.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224466558|gb|ACN44388.1| polyA polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|322713208|gb|EFZ04779.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SCSA50]
gi|326626549|gb|EGE32892.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. SG9]
gi|392789694|gb|EJA46196.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21538]
gi|392791685|gb|EJA48154.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22425]
gi|392822029|gb|EJA77843.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19593]
gi|395988364|gb|EJH97521.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639016-6]
gi|395991006|gb|EJI00132.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 640631]
gi|395993599|gb|EJI02693.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 622731-39]
gi|395999647|gb|EJI08664.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 485549-17]
gi|396004867|gb|EJI13848.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-0424]
gi|396007053|gb|EJI16012.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-6]
gi|396012995|gb|EJI21885.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-70]
gi|396013163|gb|EJI22051.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 596866-22]
gi|396014876|gb|EJI23760.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-26]
gi|396028297|gb|EJI37058.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-46]
gi|396028564|gb|EJI37324.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629164-37]
gi|396032914|gb|EJI41630.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 639672-50]
gi|396038220|gb|EJI46860.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-1427]
gi|396038638|gb|EJI47273.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 78-1757]
gi|396043093|gb|EJI51707.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 77-2659]
gi|396052485|gb|EJI60992.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 8b-1]
gi|396055270|gb|EJI63761.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22510-1]
gi|396061546|gb|EJI69968.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648905 5-18]
gi|396069000|gb|EJI77344.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 6-18]
gi|396071138|gb|EJI79464.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|396071710|gb|EJI80033.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-3079]
gi|434939079|gb|ELL45957.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|434961893|gb|ELL55133.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|434969213|gb|ELL61927.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1882]
gi|434975875|gb|ELL68149.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1884]
gi|434982680|gb|ELL74490.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1594]
gi|434985021|gb|ELL76721.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1566]
gi|434985099|gb|ELL76796.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|434992386|gb|ELL83843.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1580]
gi|434994452|gb|ELL85802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1543]
gi|435001576|gb|ELL92668.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1441]
gi|435009123|gb|ELL99919.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1810]
gi|435010447|gb|ELM01212.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1558]
gi|435017368|gb|ELM07875.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1018]
gi|435019994|gb|ELM10422.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1010]
gi|435029935|gb|ELM19984.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1729]
gi|435032668|gb|ELM22599.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0895]
gi|435041019|gb|ELM30771.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0899]
gi|435042295|gb|ELM32015.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1457]
gi|435046198|gb|ELM35815.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1747]
gi|435049371|gb|ELM38898.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0968]
gi|435055648|gb|ELM45059.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1444]
gi|435055847|gb|ELM45257.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1445]
gi|435066226|gb|ELM55316.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1565]
gi|435069538|gb|ELM58538.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1559]
gi|435073054|gb|ELM61943.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1808]
gi|435073420|gb|ELM62293.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_0956]
gi|435078311|gb|ELM67043.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1811]
gi|435087649|gb|ELM76136.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1455]
gi|435091941|gb|ELM80314.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1725]
gi|435098447|gb|ELM86688.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1575]
gi|435100933|gb|ELM89088.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1745]
gi|435109122|gb|ELM97077.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1791]
gi|435111423|gb|ELM99327.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 576709]
gi|435112131|gb|ELN00008.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CDC_2010K_1795]
gi|435119335|gb|ELN06956.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 635290-58]
gi|435125551|gb|ELN12992.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-19]
gi|435126406|gb|ELN13801.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-16]
gi|435132920|gb|ELN20103.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607307-2]
gi|435141583|gb|ELN28524.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 607308-9]
gi|435141941|gb|ELN28871.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 629163]
gi|435146836|gb|ELN33618.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_N202]
gi|435149559|gb|ELN36254.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE15-1]
gi|435157303|gb|ELN43764.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_56-3991]
gi|435157804|gb|ELN44238.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_76-3618]
gi|435163984|gb|ELN50097.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_81-2490]
gi|435169628|gb|ELN55398.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL913]
gi|435177372|gb|ELN62697.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SL909]
gi|435179529|gb|ELN64677.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 638970-15]
gi|435184166|gb|ELN69111.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CVM_69-4941]
gi|435194093|gb|ELN78553.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|435195463|gb|ELN79855.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435200799|gb|ELN84765.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 22-17]
gi|435208616|gb|ELN92022.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 40-18]
gi|435213241|gb|ELN96152.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 22558]
gi|435222414|gb|ELO04522.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 1-1]
gi|435224560|gb|ELO06521.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 4-1]
gi|435230950|gb|ELO12215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435232088|gb|ELO13215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648898 4-5]
gi|435232951|gb|ELO14021.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13183-1]
gi|435234190|gb|ELO15069.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648899 3-17]
gi|435243834|gb|ELO24090.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 1-17]
gi|435244237|gb|ELO24468.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648900 1-16]
gi|435249354|gb|ELO29179.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 39-2]
gi|435257752|gb|ELO37032.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648902 6-8]
gi|435262182|gb|ELO41311.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648903 1-6]
gi|435268438|gb|ELO47019.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648904 3-6]
gi|435269891|gb|ELO48401.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 653049 13-19]
gi|435278687|gb|ELO56517.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642044 8-1]
gi|435282251|gb|ELO59873.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 561362 9-7]
gi|435284344|gb|ELO61840.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 543463 42-20]
gi|435290366|gb|ELO67294.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 648901 16-16]
gi|435301497|gb|ELO77522.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 76-2651]
gi|435304322|gb|ELO80104.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 33944]
gi|435318046|gb|ELO91032.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 6.0562-1]
gi|435318886|gb|ELO91774.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 81-2625]
gi|435326068|gb|ELO97902.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 62-1976]
gi|435333338|gb|ELP04165.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 53-407]
gi|435334611|gb|ELP05111.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 50-5646]
gi|436415696|gb|ELP13613.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
gi|436416961|gb|ELP14860.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|436423082|gb|ELP20900.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|444852979|gb|ELX78052.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|444857141|gb|ELX82156.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE8a]
gi|444859760|gb|ELX84700.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE10]
gi|444865755|gb|ELX90519.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 20037]
gi|444873529|gb|ELX97822.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 13-1]
gi|444879551|gb|ELY03649.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444885147|gb|ELY08949.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. PT23]
gi|444890429|gb|ELY13763.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
Length = 472
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|300690555|ref|YP_003751550.1| poly(A) polymerase I [Ralstonia solanacearum PSI07]
gi|299077615|emb|CBJ50250.1| poly(A) polymerase I [Ralstonia solanacearum PSI07]
Length = 515
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 149/330 (45%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 95 LLGIQPKDFDVATNATPEQVEALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 154
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 155 AVESEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 213
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LR +R AA+ GF T +
Sbjct: 214 DQTVHDYHHGMEDMRARLLRMIGDPHTRYREDPVRMLRVVRFAAKTGFDIDPATRAPIAE 273
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + +R
Sbjct: 274 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHSGLLPLLDVALEQPMGQR--- 330
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D+ + +P A L +H L R +PL+ A+ +
Sbjct: 331 ---FVQLALDNTDERVKAGKPVSPGFLFASLMWHHVLEHWNRRRAAGEPLIPALHTAMDE 387
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 388 VLDRQTEQLAIQRRFTADMKEIWS--MQPR 415
>gi|445147775|ref|ZP_21388378.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445155705|ref|ZP_21392425.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|444844032|gb|ELX69278.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444848573|gb|ELX73696.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
Length = 472
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|423118715|ref|ZP_17106399.1| Poly(A) polymerase [Klebsiella oxytoca 10-5246]
gi|376400781|gb|EHT13392.1| Poly(A) polymerase [Klebsiella oxytoca 10-5246]
Length = 453
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 126/259 (48%), Gaps = 6/259 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 62 LLGKKPKDFDVTTSATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D+++ +
Sbjct: 122 DRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQEGMI 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL E+
Sbjct: 182 RLIGDPETRYREDPVRMLRAVRFAAKLNMNISAETAEPIPRLAALLHDVPPARLFEEVLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + LL ++ L + L P Y + G +++ + N D + D
Sbjct: 242 LLQAGYGYDTYMLLREYNLFQPLFPTITRYFTERG---DSPMEHIITQVLKNTDNRIHND 298
Query: 238 RPCHSSLWIAILAFHKALS 256
+ + A++ ++ L
Sbjct: 299 MRVNPAFLFAVMFWYPLLE 317
>gi|387131369|ref|YP_006294259.1| Poly(A) polymerase [Methylophaga sp. JAM7]
gi|386272658|gb|AFJ03572.1| Poly(A) polymerase [Methylophaga sp. JAM7]
Length = 453
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 131/271 (48%), Gaps = 21/271 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF-ENTIVEVSSFSTSGR-RF 58
+L PKDFDI T+A ++V ++F + ++G+RF + HV F N I+EV++F
Sbjct: 72 LLGYEPKDFDIATNALPEQVHQLFRRSRMIGRRFKLVHVRFGRNEIIEVATFRAPPEAEN 131
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D + + G E+D WR RDFTIN L ++ I DY GGI D+++ ++
Sbjct: 132 QQDGRIMQDNVYGTLEQDA--WR----RDFTINALYYNIADFTIVDYTGGIADLQQGLIR 185
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ ++ED R+LRA+R A+LG T + L+ + + RL E +
Sbjct: 186 LIGEQRVRYREDPVRMLRALRFKAKLGLALESVTEKHITELAALLKDIPPARLFDETLKL 245
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
G A + +LL ++G+ E L P AA L G ++ LL+ N D+ L +
Sbjct: 246 YLSGQAVQTHQLLCQYGIFEALFPQTAACLQTEG---HEEARRLLMGALENTDRRLQQGK 302
Query: 239 PCHSS------LWIAI----LAFHKALSDQP 259
P + LW + L + +SD P
Sbjct: 303 PVTPAFLFAAILWAPLRQRWLQLSQKMSDMP 333
>gi|339998207|ref|YP_004729090.1| poly(A) polymerase [Salmonella bongori NCTC 12419]
gi|339511568|emb|CCC29277.1| poly(A) polymerase [Salmonella bongori NCTC 12419]
Length = 472
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + + L ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKKLREYNLFQPLFPTITRYFTENG 294
>gi|187929930|ref|YP_001900417.1| poly(A) polymerase [Ralstonia pickettii 12J]
gi|187726820|gb|ACD27985.1| poly(A) polymerase [Ralstonia pickettii 12J]
Length = 521
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 148/330 (44%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A +V +F + I+G+RF I HV F + I+EVS+F
Sbjct: 99 LLGIKPKDFDVATNATPDQVQALFRRSRIIGRRFQIVHVTFYGGRDQEIIEVSTFRALVD 158
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + +DP
Sbjct: 159 AVDAEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYDPA 217
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LR +R AA+ GF +T +
Sbjct: 218 DETVHDYHHGMEDMRARTLRMIGDPHTRYREDPVRMLRVVRFAAKTGFDIDPDTRAPIAE 277
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + +R
Sbjct: 278 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGQR--- 334
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D + +P A L +H + R +PL+ A+ +
Sbjct: 335 ---FVQLALDNTDDRVKAGKPVSPGFLFASLLWHHVVEHWNRRRAAGEPLIPALHTAMDE 391
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 392 VLDRQTEQLAIQRRFTSDMKEIWS--MQPR 419
>gi|423138710|ref|ZP_17126348.1| polynucleotide adenylyltransferase [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051264|gb|EHY69155.1| polynucleotide adenylyltransferase [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 454
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLHMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGFETYQQLREYNLFQPLFPTITRYFTENG 276
>gi|226940321|ref|YP_002795395.1| PcnB [Laribacter hongkongensis HLHK9]
gi|226715248|gb|ACO74386.1| PcnB [Laribacter hongkongensis HLHK9]
Length = 450
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 112/209 (53%), Gaps = 5/209 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF-ENTIVEVSSFSTSGRRFS 59
++ PKDFD+ T+A +EV R+F + I+G+RF I HV F + ++EV++F GR
Sbjct: 67 LIGHEPKDFDVATNATPEEVHRLFRRSRIIGRRFRIVHVVFGRDEVIEVTTFRGDGR--- 123
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
D + I D + +RDFT N L ++P + I+DY G+ D+ ++
Sbjct: 124 -DLQTTESGRIISDNSYGSMADDSRRRDFTANALYYNPADESIHDYHHGVRDVTARRLVM 182
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ ++ED R+LRA+R+AA+LGF T + HL+P + + + RL EM ML
Sbjct: 183 IGQPIERYKEDPVRMLRAVRLAAKLGFSIDESTRKPISHLAPLLRDVAQARLFDEMLKML 242
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
G++ A L L GL + + P+ A L
Sbjct: 243 HSGASWACLTRLRAEGLHKGIFPLLDAVL 271
>gi|195873676|ref|ZP_02698162.2| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|205360723|ref|ZP_02685928.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|378953992|ref|YP_005211479.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|418762656|ref|ZP_13318783.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|418768556|ref|ZP_13324604.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|418770370|ref|ZP_13326391.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|418777626|ref|ZP_13333553.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|418779873|ref|ZP_13335768.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|418786620|ref|ZP_13342433.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|418787327|ref|ZP_13343130.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|418792795|ref|ZP_13348535.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|418796600|ref|ZP_13352292.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|418800854|ref|ZP_13356498.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|418805880|ref|ZP_13361458.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|418810241|ref|ZP_13365782.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|418830545|ref|ZP_13385506.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|418835485|ref|ZP_13390378.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|418842874|ref|ZP_13397683.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|418843592|ref|ZP_13398388.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|418849251|ref|ZP_13403984.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|418857313|ref|ZP_13411942.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|418862141|ref|ZP_13416686.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
gi|418870392|ref|ZP_13424813.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|419788735|ref|ZP_14314419.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|419791502|ref|ZP_14317154.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|194405019|gb|ACF65241.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|195632749|gb|EDX51203.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|205347459|gb|EDZ34090.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|357204603|gb|AET52649.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Gallinarum/pullorum str. RKS5078]
gi|392616821|gb|EIW99250.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 1]
gi|392620365|gb|EIX02734.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. Levine 15]
gi|392731287|gb|EIZ88516.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35199]
gi|392736133|gb|EIZ93300.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35185]
gi|392736964|gb|EIZ94125.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21539]
gi|392743554|gb|EJA00624.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 33953]
gi|392747450|gb|EJA04448.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21559]
gi|392751106|gb|EJA08062.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35188]
gi|392766507|gb|EJA23284.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19447]
gi|392766748|gb|EJA23521.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19449]
gi|392771469|gb|EJA28190.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19567]
gi|392782352|gb|EJA38989.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 22513]
gi|392782445|gb|EJA39079.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 35202]
gi|392784107|gb|EJA40716.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21550]
gi|392801235|gb|EJA57463.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N18486]
gi|392803509|gb|EJA59702.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM N1543]
gi|392806587|gb|EJA62685.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 21554]
gi|392816348|gb|EJA72276.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19443]
gi|392821735|gb|EJA77558.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392831075|gb|EJA86710.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 4176]
gi|392835260|gb|EJA90858.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19470]
gi|392836830|gb|EJA92407.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Newport str. CVM 19536]
Length = 437
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 159 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 259
>gi|417715439|ref|ZP_12364377.1| poly(A) polymerase family protein [Shigella flexneri K-227]
gi|333021774|gb|EGK41023.1| poly(A) polymerase family protein [Shigella flexneri K-227]
Length = 435
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 43 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 102
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 103 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 156
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 157 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 216
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 217 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 257
>gi|344172270|emb|CCA84902.1| poly(A) polymerase I [Ralstonia syzygii R24]
Length = 515
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 149/330 (45%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 95 LLGIQPKDFDVATNATPEQVEALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 154
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 155 AVESEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 213
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LR +R AA+ GF T +
Sbjct: 214 DQTVHDYHHGMEDMRARLLRMIGDPHTRYREDPVRMLRVVRFAAKTGFDIDPATRAPIAE 273
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + +R
Sbjct: 274 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHSGLLPLLDVALEQPMGQR--- 330
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D+ + +P A L +H L R +PL+ A+ +
Sbjct: 331 ---FVQLALDNTDERVKAGKPVSPGFLFASLMWHHVLEHWNRRRAAGEPLIPALHTAMDE 387
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 388 VLDRQTEQLAIQRRFTADMKEIWS--MQPR 415
>gi|149927694|ref|ZP_01915946.1| probable polynucleotide adenylyltransferase protein [Limnobacter
sp. MED105]
gi|149823520|gb|EDM82750.1| probable polynucleotide adenylyltransferase protein [Limnobacter
sp. MED105]
Length = 485
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 125/258 (48%), Gaps = 11/258 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T A ++ R+F + ++G+RF I HV F +E S+F +
Sbjct: 88 LLGMRPKDFDVATDASPEQTQRLFRRARVIGRRFQIVHVMFGPETIETSTFRALAS--AS 145
Query: 61 DFKYEFERPIGCDEKDFIRW-RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ K E R + +E F R + +RDFT+N + +DP + ++DY G+ED+R ++
Sbjct: 146 NEKDEHGRVLRDNE--FGRQDEDASRRDFTVNAMYYDPSTETVWDYHHGMEDLRSRVLRM 203
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ S ++ED R+LR +R AA+L F T + LS + + RL EM +L
Sbjct: 204 IGEPSLRYREDPVRMLRVVRFAAKLNFEIEPATYAPIAELSDLLRNVPASRLFDEMLKLL 263
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRP 239
GSA A L+ L K GL + P+ A L ++ L + DK + +P
Sbjct: 264 MSGSAMACLKGLRKAGLHHGVFPLLDAIL------EHERGEPFLTEALARTDKRVKEGKP 317
Query: 240 CHSSLWIAILAFHKALSD 257
A L +H L +
Sbjct: 318 LSPGFLFACLLWHLVLEN 335
>gi|365969053|ref|YP_004950614.1| poly(A) polymerase [Enterobacter cloacae EcWSU1]
gi|365747966|gb|AEW72193.1| Poly(A) polymerase [Enterobacter cloacae EcWSU1]
Length = 454
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F S
Sbjct: 62 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ I + RL
Sbjct: 176 LKDGLIRLIGTPETRYREDPVRMLRAVRFAAKLSMRISPETAEPIPRLATLINDVPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P ++G
Sbjct: 236 FEEALKLLQAGYGYETYKLLREYSLFQPLFPTITRCFTENG 276
>gi|422783092|ref|ZP_16835876.1| poly(A) polymerase [Escherichia coli TW10509]
gi|323975694|gb|EGB70790.1| poly(A) polymerase [Escherichia coli TW10509]
Length = 454
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|52424981|ref|YP_088118.1| PcnB protein [Mannheimia succiniciproducens MBEL55E]
gi|52307033|gb|AAU37533.1| PcnB protein [Mannheimia succiniciproducens MBEL55E]
Length = 425
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF-------- 51
+L++ PKDFD+ T+A ++ +F QC +VG+RF + H+ F I+EV++F
Sbjct: 31 LLDKKPKDFDVATNARPDQIQAIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDIE 90
Query: 52 STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ + + S + + G E+D R RDFT+N L + P ++YDY GIED
Sbjct: 91 NENASKQSEEGMLLRDNVYGTLEQDAER------RDFTVNALYYSPKDNLVYDYFNGIED 144
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + T +QED R+LR+IR A+L + +A ++ L+ + + RL
Sbjct: 145 LKAGKLRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLDKSSAPHIRKLAHLLKNIPPARL 204
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + LL ++ L E L P Y + G
Sbjct: 205 FDESLKLLQSGQGVKTYNLLREYHLFEQLFPSLMPYFTERG 245
>gi|373467553|ref|ZP_09558847.1| polynucleotide adenylyltransferase [Haemophilus sp. oral taxon 851
str. F0397]
gi|371758274|gb|EHO47047.1| polynucleotide adenylyltransferase [Haemophilus sp. oral taxon 851
str. F0397]
Length = 480
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 113/213 (53%), Gaps = 3/213 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKD D+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S R
Sbjct: 89 LLGKKPKDSDVATNARPEQIQNIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHSDAR 148
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K E + D ++ +RDFT+N L ++P + DY GI+D++ K+
Sbjct: 149 NENQAKQSNEGMLLRDNVYGTIEQDAERRDFTVNALYYNPQDNTLRDYFEGIKDLKAGKL 208
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T +QED R+LR+IR A+L + + ++ L+P + + RL E
Sbjct: 209 RLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARLFDESLK 268
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+L G + RLL ++GL E L P ++Y +
Sbjct: 269 LLQAGQGVKTYRLLRQYGLFEQLFPALSSYFTE 301
>gi|416892981|ref|ZP_11924305.1| polyA polymerase [Aggregatibacter aphrophilus ATCC 33389]
gi|347814679|gb|EGY31328.1| polyA polymerase [Aggregatibacter aphrophilus ATCC 33389]
Length = 421
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 117/215 (54%), Gaps = 5/215 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S
Sbjct: 31 LLGKKPKDFDVATNARPEQIQEIFQRQCRLVGRRFRLAHIMFGREIIEVATFRANHAE-S 89
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K+ + G +D + ++ +RDF++N L ++P + D+ GIED++ K
Sbjct: 90 HNEKHAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDFFNGIEDLKNGK 149
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K L+ + + RL E
Sbjct: 150 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEMPIKELAHLLKNIPPARLFEESL 209
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
+L G + RLL ++GL E L P+ + Y ++
Sbjct: 210 KLLQAGYGVKTYRLLRQYGLFEQLFPLLSKYFTEY 244
>gi|417710772|ref|ZP_12359782.1| poly(A) polymerase family protein [Shigella flexneri K-272]
gi|333011530|gb|EGK30944.1| poly(A) polymerase family protein [Shigella flexneri K-272]
Length = 454
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|417355617|ref|ZP_12131423.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
gi|353598209|gb|EHC54708.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar Give
str. S5-487]
Length = 445
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 276
>gi|294635067|ref|ZP_06713582.1| polyA polymerase [Edwardsiella tarda ATCC 23685]
gi|451965755|ref|ZP_21919012.1| poly(A) polymerase [Edwardsiella tarda NBRC 105688]
gi|291091532|gb|EFE24093.1| polyA polymerase [Edwardsiella tarda ATCC 23685]
gi|451315557|dbj|GAC64374.1| poly(A) polymerase [Edwardsiella tarda NBRC 105688]
Length = 457
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/261 (29%), Positives = 126/261 (48%), Gaps = 18/261 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 61 LLGKRPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEHADE 120
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
G+ S+ K + G E+D R RDFTIN L + + DY GG+ D
Sbjct: 121 GKNISQQGKNGMLLRDNVYGNIEEDAQR------RDFTINSLYYSVADFTVRDYTGGLND 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+R ++ + T ++ED R+LRA+R AA+L S ETA + L+P + + RL
Sbjct: 175 LRAGLIRLIGDPETRYREDPVRMLRAVRFAAKLRMDISPETAAPIARLAPLLRDIPAARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + L ++ L + L P+ + +G N+L + N D
Sbjct: 235 FEEALKLLQAGYGYETYLKLREYQLFQPLFPVICRHFTPNG---DSPMENILAQVLKNTD 291
Query: 232 KLLAPDRPCHSSLWIAILAFH 252
L D + + A + ++
Sbjct: 292 HRLQNDMRVNPAFLFAAMLWY 312
>gi|417472407|ref|ZP_12168123.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
gi|353654310|gb|EHC95616.1| Poly A polymerase [Salmonella enterica subsp. enterica serovar
Rubislaw str. A4-653]
Length = 477
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 276
>gi|449128795|ref|ZP_21765041.1| poly(A) polymerase [Treponema denticola SP33]
gi|448941203|gb|EMB22107.1| poly(A) polymerase [Treponema denticola SP33]
Length = 380
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 113/216 (52%), Gaps = 29/216 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
++ +PKDFDI TSAE ++ ++F ++G+RF + H+ F I EVS+F ST
Sbjct: 61 LIGHVPKDFDIATSAEPSKIRKIFRNSRVIGRRFRLVHIFFGEKIYEVSTFRSTEDGSIG 120
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F G ++D R RDFT+N L +DP +++ DY+ G++DIR KV+
Sbjct: 121 NKF--------GTIDEDVHR------RDFTLNALYYDPIHELVIDYVDGVKDIRAKKVRP 166
Query: 120 VIPASTSFQEDCARILRAIRIAARL--GFRF-----SRETAHFVKHLSPSILKLDRGRLL 172
+IP F ED R++RAI+ AA G F R+ AH ++ +SPS R+
Sbjct: 167 IIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFFLQLQIRKNAHLLEFVSPS-------RIT 219
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
E+N ++ G A ++ L F L L P A++
Sbjct: 220 EEINKIIFSGHASDIVKKLLDFKLYVYLQPGACAFI 255
>gi|163750934|ref|ZP_02158167.1| polyA polymerase [Shewanella benthica KT99]
gi|161329358|gb|EDQ00355.1| polyA polymerase [Shewanella benthica KT99]
Length = 448
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 153/303 (50%), Gaps = 24/303 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST----SGR 56
+L PKDFD++T+A +E+ +F C ++G+RF + H+ F ++EV++ SG
Sbjct: 30 LLGFQPKDFDVVTNATPEEIKGLFRNCRLIGRRFRLAHIVFGRDVIEVATLRGHHVDSGE 89
Query: 57 RFSR---DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ S+ + + + G ++D R RDFT+N L +D I+ Y GG++D++
Sbjct: 90 KISKTNAEGRLLRDNVYGTIDEDAER------RDFTVNALYYDISDFSIHSYGGGLQDLQ 143
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + +T ++ED R+LRA+R A +LG ++TA + L+P + + R+
Sbjct: 144 SRTIRMIGDPNTRYREDPVRMLRAVRFATKLGMTIEKDTASPISELAPLLKDIPAARMYE 203
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G A+ + ++ FGL E L P+ + LV + ++ S+ ++D
Sbjct: 204 EILKLFFNGQAQNNFNMMRDFGLFEPLFPLVNSLLVDE---PEGPAAKMMQSIMESIDAR 260
Query: 234 LAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSL--AVYNG-GDMLE----AVKIAR 286
+ ++ + + A + ++ LS + D + SL A Y GD++E + I R
Sbjct: 261 VKAEKTVTPAFFYAAILWY-PLSQRADDIALEGGLSLYDAYYAAMGDVMEQQCSTISIPR 319
Query: 287 RIN 289
R +
Sbjct: 320 RFS 322
>gi|348590549|ref|YP_004875011.1| poly(A) polymerase [Taylorella asinigenitalis MCE3]
gi|347974453|gb|AEP36988.1| Poly(A) polymerase [Taylorella asinigenitalis MCE3]
Length = 451
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 129/282 (45%), Gaps = 35/282 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
ML ++PKDFD+ T A E+ +F + I+GKRF + HV F I+E S+F SG
Sbjct: 63 MLGQVPKDFDVTTDATPLEIKPLFRRALIIGKRFKLVHVMFGPEIIETSTFRASGELPED 122
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R D Y G E D R RDFTIN + +DP +I+YDY G DI+
Sbjct: 123 SDGRILSDNNY------GTIETDAER------RDFTINAMYYDPIDEIVYDYHNGFRDIK 170
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+++ + ++ED R+LRAIR A +LG + T + LS I + R+
Sbjct: 171 NLQIRMIGEPEKRYREDPVRMLRAIRFAGKLGANIATSTYEPISRLSHLISNVPDSRIFD 230
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPI--------QAAYLVKHGFRRRDKRSNLLLS 225
E +L G + +R L K L + LP+ + ++ F R D+R
Sbjct: 231 ETFKLLTCGDSLYCIRELRKLKLDKGTLPLLDKVLALENSEKFLQIAFERTDQR------ 284
Query: 226 LFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAV 267
L+K + P + LW + + L+ + + + A+
Sbjct: 285 --VRLNKSINPSYLYAAILWPLVKSHFDTLTKENKQNMFFAL 324
>gi|339495418|ref|YP_004715711.1| poly(A) polymerase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338802790|gb|AEJ06622.1| poly(A) polymerase [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 463
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 131/287 (45%), Gaps = 41/287 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+D+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 67 LLQLNPKDYDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPEEDD 126
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP ++ I
Sbjct: 127 EDASQLASRNESGR-ILRDNVY------GTLEDDAQR------RDFTINALYYDPTSERI 173
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
D+ G+ DIR ++ + +QED R+LRA+R AA+L F R +A + L+
Sbjct: 174 LDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAKLDFEIERHSAEPIADLAEL 233
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+ + RL E + G AE + LL ++ L L P A L ++ + L
Sbjct: 234 LDGIPSARLFDETLKLFLGGKAERTFELLLEYDLFAPLFPASATALERNP----EYAGTL 289
Query: 223 LLSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
+ + +N D + +P + LW A+ A L D+ P+
Sbjct: 290 IRNALANTDLRIQQGKPVTPAFLFAALLWPALPARVLELQDRGMPPI 336
>gi|204927237|ref|ZP_03218439.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|204323902|gb|EDZ09097.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
Length = 454
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 276
>gi|170768603|ref|ZP_02903056.1| poly(A) polymerase [Escherichia albertii TW07627]
gi|170122707|gb|EDS91638.1| poly(A) polymerase [Escherichia albertii TW07627]
Length = 454
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLHMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG 276
>gi|170728128|ref|YP_001762154.1| poly(A) polymerase [Shewanella woodyi ATCC 51908]
gi|169813475|gb|ACA88059.1| poly(A) polymerase [Shewanella woodyi ATCC 51908]
Length = 421
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 36/307 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD++T+A +E+ R+F C +VG+RF + H+ F ++EV++
Sbjct: 30 LLGLQPKDFDVVTNATPEEIKRLFRNCRLVGRRFRLAHIVFGRDVIEVATLRGHHVDNEE 89
Query: 52 ----STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIG 107
+ + R RD Y G ++D R RDFT+N L +D I+ Y G
Sbjct: 90 KISKTNAEGRLLRDNVY------GTIDEDAER------RDFTVNALYYDISDFSIHSYGG 137
Query: 108 GIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLD 167
G+ED+ ++ + +T ++ED R+LRA+R A +LG ETA + L+P + +
Sbjct: 138 GLEDLHSRTIRMIGDPNTRYREDPVRMLRAVRFATKLGMTVDEETAAPIYELAPLLKDIP 197
Query: 168 RGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF 227
R+ E+ + G AE + ++ FGL L P+ L + + + +L +
Sbjct: 198 AARMYEEVLKLFFNGQAENNFAMMRDFGLFAPLFPLVETLLTEDA---KGPATKMLQVIM 254
Query: 228 SNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSL--AVYNG-GDMLE---- 280
N D + ++ + + A + ++ L+ + D + + SL A Y GD++E
Sbjct: 255 KNTDARVQAEKTVTPAFFYAAILWY-PLAQKADDIALESGLSLYDAYYAAMGDIMEQQCR 313
Query: 281 AVKIARR 287
+ I RR
Sbjct: 314 TISIPRR 320
>gi|452745803|ref|ZP_21945635.1| polyA polymerase [Mannheimia haemolytica serotype 6 str. H23]
gi|452085942|gb|EME02333.1| polyA polymerase [Mannheimia haemolytica serotype 6 str. H23]
Length = 436
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 132/256 (51%), Gaps = 8/256 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFDI T+A +E+ R+F QC ++G+RF + H+ + I EV++F +G
Sbjct: 42 LLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFR-AGHESH 100
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
R+ K G +D + + +RDFT+N L +D +I+D+ GIED+R K
Sbjct: 101 RNDKISKVSDEGMLLRDNVYGTLREDAERRDFTVNALYYDIKRNLIFDFFNGIEDLRAGK 160
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
+ + + +QED R+LRA+R A+L + TA ++ ++ + + RL E
Sbjct: 161 LSLIGEPTIRYQEDPVRMLRAVRFMAKLDMFLDKATASPIRDMAVLLTNIPAARLFDESL 220
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L G+ + +LL ++ L + L P+ A+ G ++ ++ ++ D+ +A
Sbjct: 221 KLLQTGAGLKTYQLLREYELWQFLFPVLPAFFTAKGDSYAER---MITKALNSTDERIAD 277
Query: 237 DRPCHSSLWIAILAFH 252
P + + A L ++
Sbjct: 278 KLPVNPAFLFAALLWY 293
>gi|422806634|ref|ZP_16855065.1| poly(A) polymerase [Escherichia fergusonii B253]
gi|424815056|ref|ZP_18240207.1| poly(A) polymerase I [Escherichia fergusonii ECD227]
gi|324112445|gb|EGC06422.1| poly(A) polymerase [Escherichia fergusonii B253]
gi|325496076|gb|EGC93935.1| poly(A) polymerase I [Escherichia fergusonii ECD227]
Length = 454
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L + S ETA + L+ + + RL
Sbjct: 176 LKEGIIRLIGNPETRYREDPVRMLRAVRFAAKLNMQISPETAEPIPRLAALLNDVPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGYGYETYKLLREYHLFQPLFPTITRYFTENG 276
>gi|378958339|ref|YP_005215825.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
gi|374352211|gb|AEZ43972.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. P-stx-12]
Length = 454
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHNEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 276
>gi|212711310|ref|ZP_03319438.1| hypothetical protein PROVALCAL_02382 [Providencia alcalifaciens DSM
30120]
gi|212686039|gb|EEB45567.1| hypothetical protein PROVALCAL_02382 [Providencia alcalifaciens DSM
30120]
Length = 502
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 133/255 (52%), Gaps = 6/255 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C +VG+RF + H+ F I+EV++F +
Sbjct: 109 LLGQKPKDFDITTNATPEQIRKLFRNCRLVGRRFRLAHIMFGPEIIEVATFRGHHDQEVD 168
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D + G +D I + ++RDFT+N L ++ + DY+ G++D++ +
Sbjct: 169 DKNLSSQAQNGMLLRDNIFGSIEEDAIRRDFTVNSLYYNIDDFSVRDYVNGLQDLKDGVI 228
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R++RA+R A +L R +TA + L+P + ++ RL E
Sbjct: 229 RLIGDPETRYREDPVRMIRAVRFACKLNMRIELKTAEPIHRLAPLLGEIPSARLFEESLK 288
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G A+ ++L ++ L E L P+ A+ ++G +K ++ + N D L D
Sbjct: 289 LLQAGYGYATYKMLNQYHLFEQLFPVIASRFTENGDSPMEK---IIEQVLKNTDFRLKND 345
Query: 238 RPCHSSLWIAILAFH 252
+ + + A + ++
Sbjct: 346 KRVNPAFLFAAMLWY 360
>gi|16759183|ref|NP_454800.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|29140733|ref|NP_804075.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|213650761|ref|ZP_03380814.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|25513273|pir||AI0525 poly(A) polymerase [imported] - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16501473|emb|CAD01345.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29136357|gb|AAO67924.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
Length = 472
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHNEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|115311613|sp|Q8Z9C3.2|PCNB_SALTI RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein; Flags: Precursor
Length = 465
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 73 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHNEGSES 132
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 133 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 186
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 187 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 246
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 247 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 287
>gi|237729447|ref|ZP_04559928.1| poly(A) polymerase I [Citrobacter sp. 30_2]
gi|226909176|gb|EEH95094.1| poly(A) polymerase I [Citrobacter sp. 30_2]
Length = 472
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 29/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ + ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LEEGIIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + + L ++ L + L P Y + G ++ ++ + N D
Sbjct: 254 FEEALKLLQAGYGYETYKKLREYSLFQPLFPTITRYFTEDGDSPMER---IIAQVLKNTD 310
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
+ D + + A + ++ PL+ A +A +G +A +A +N
Sbjct: 311 NRIHNDMRVNPAFLFAAMFWY---------PLLEAAQKIAQESGLAYYDAFALA--MNDV 359
Query: 292 HDESFCELLEPRDL 305
DE+ L P+ L
Sbjct: 360 LDEACRSLAIPKRL 373
>gi|161612545|ref|YP_001586510.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|374999925|ref|ZP_09724266.1| polynucleotide adenylyltransferase [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|416564843|ref|ZP_11763567.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|416652288|ref|ZP_11811609.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|416708096|ref|ZP_11832958.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|418491508|ref|ZP_13058024.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|418495103|ref|ZP_13061548.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|418501423|ref|ZP_13067812.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|418504143|ref|ZP_13070502.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|418524238|ref|ZP_13090225.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|449306276|ref|YP_002113212.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|452121502|ref|YP_007471750.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|161361909|gb|ABX65677.1| hypothetical protein SPAB_00235 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|323228577|gb|EGA12706.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|353078143|gb|EHB43902.1| polynucleotide adenylyltransferase [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|363570190|gb|EHL54128.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|366060144|gb|EHN24409.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035318]
gi|366061629|gb|EHN25874.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035278]
gi|366066937|gb|EHN31095.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035320]
gi|366072471|gb|EHN36563.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035321]
gi|366826892|gb|EHN53802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|372207900|gb|EHP21397.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008286]
gi|451910506|gb|AGF82312.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 472
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|226946294|ref|YP_002801367.1| polynucleotide adenylyltransferase PcnB [Azotobacter vinelandii DJ]
gi|226721221|gb|ACO80392.1| polynucleotide adenylyltransferase; PcnB [Azotobacter vinelandii
DJ]
Length = 463
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 123/268 (45%), Gaps = 36/268 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L+ PKDFD+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 66 LLDIEPKDFDVATSATPEQVRAEFRNARVIGRRFKLAHVHFGREIIEVATFRAHHPDDEE 125
Query: 54 ------------SGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKI 101
SGR RD Y G E+D R RDFTIN L FD
Sbjct: 126 DDEDNHLAMRHESGR-ILRDNVY------GTLEEDAQR------RDFTINALYFDIAHDR 172
Query: 102 IYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSP 161
I DY G+ DIR V+ + + ED R+LRA+R AA+L F +A ++ L+P
Sbjct: 173 ILDYAHGVHDIRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKLDFDIEHHSAAPIRRLAP 232
Query: 162 SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSN 221
+ + RL E+ + G AE + LL ++ L L P AA L R D
Sbjct: 233 LLRDIPAPRLFDEVLKLFLSGYAEDTFELLLEYDLFAPLFPATAAALE----RNPDYVGR 288
Query: 222 LLLSLFSNLDKLLAPDRPCHSSLWIAIL 249
L+ +N D+ +A +P + A L
Sbjct: 289 LVRHALANTDERIAQGKPVTPAFLFAAL 316
>gi|17547346|ref|NP_520748.1| polynucleotide adenylyltransferase [Ralstonia solanacearum GMI1000]
gi|17429649|emb|CAD16334.1| probable polynucleotide adenylyltransferase protein [Ralstonia
solanacearum GMI1000]
Length = 514
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 148/330 (44%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 95 LLGIKPKDFDVATNATPEQVEALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 154
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 155 AVESEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 213
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LR +R AA+ GF T +
Sbjct: 214 DQTVHDYHRGMEDMRARLLRMIGDPHTRYREDPVRMLRVVRFAAKTGFDIDPATRAPIAE 273
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + +R
Sbjct: 274 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGQR--- 330
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D+ + +P A L +H L R +PL+ A+
Sbjct: 331 ---FVQLALDNTDERVKAGKPVSPGFLFASLMWHHVLEHWNRRRAAGEPLIPALHEAMDE 387
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 388 VLDRQTEQLAIQRRFTADMKEIWS--MQPR 415
>gi|213052337|ref|ZP_03345215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213425919|ref|ZP_03358669.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|289826507|ref|ZP_06545600.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
Length = 437
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHNEGSES 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 159 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 259
>gi|298368846|ref|ZP_06980164.1| poly(A) polymerase [Neisseria sp. oral taxon 014 str. F0314]
gi|298282849|gb|EFI24336.1| poly(A) polymerase [Neisseria sp. oral taxon 014 str. F0314]
Length = 453
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 124/252 (49%), Gaps = 26/252 (10%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T+A +EV ++F + I+G+RF I HV +EV++F G+ R
Sbjct: 70 PKDFDVATNATPEEVRKIFRRSRIIGRRFQIVHVMVGPETIEVTTFRGGGKVVQNQHGRI 129
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP ++I D+ G D++ K+
Sbjct: 130 MKDNNY------GSMEEDAMR------RDFTCNALYYDPIRRLIVDFHHGAADVQAKKLV 177
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ + +QED RILRA+R++ +LGF TA + + + + RL E+ +
Sbjct: 178 MIGNPAERYQEDPVRILRAVRLSGKLGFEVEEHTAAPIPEYAGRLKQEPVSRLFDEILKL 237
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLLAPD 237
L G A L+ L K G+ + P+ A + DK N ++SL N D+ L D
Sbjct: 238 LFSGHARDCLQQLNKLGIGSDIHPLLTA------MKSADKPENRIISLALKNTDERLRAD 291
Query: 238 RPCHSSLWIAIL 249
+ + +A +
Sbjct: 292 KSVSTGFVLAAV 303
>gi|418510723|ref|ZP_13077000.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
gi|366085427|gb|EHN49310.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Pomona str. ATCC 10729]
Length = 437
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 159 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 259
>gi|197300656|ref|ZP_02660022.2| poly(A) polymerase (PAP) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|416423009|ref|ZP_11690587.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|416429647|ref|ZP_11694709.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|416439473|ref|ZP_11700192.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|416446730|ref|ZP_11705242.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|416454920|ref|ZP_11710545.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|416458251|ref|ZP_11712853.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|416469190|ref|ZP_11718403.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|416479116|ref|ZP_11722012.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|416494698|ref|ZP_11728325.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|416495221|ref|ZP_11728403.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|416507967|ref|ZP_11735764.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416522853|ref|ZP_11740741.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416531098|ref|ZP_11745447.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416533223|ref|ZP_11746191.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416547391|ref|ZP_11754563.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|416555558|ref|ZP_11759043.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|416572617|ref|ZP_11767362.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|416578064|ref|ZP_11770284.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|416588154|ref|ZP_11776690.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|416592404|ref|ZP_11779214.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|416600522|ref|ZP_11784469.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|416608854|ref|ZP_11789586.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|416612912|ref|ZP_11791849.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|416619843|ref|ZP_11795375.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|416633126|ref|ZP_11801764.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|416644956|ref|ZP_11807170.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|416657536|ref|ZP_11813752.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|416667637|ref|ZP_11818366.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|416680613|ref|ZP_11823358.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|416694743|ref|ZP_11827339.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|416710484|ref|ZP_11834589.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|416717375|ref|ZP_11839627.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|416726608|ref|ZP_11846669.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|416727880|ref|ZP_11847369.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|416739476|ref|ZP_11853879.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|416749781|ref|ZP_11859412.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|416754250|ref|ZP_11861228.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|416763422|ref|ZP_11867096.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|416767795|ref|ZP_11870171.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|418483915|ref|ZP_13052920.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|418508801|ref|ZP_13075103.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
gi|194713171|gb|ACF92392.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197292033|gb|EDY31383.1| poly(A) polymerase (PAP) [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|322616013|gb|EFY12930.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322620797|gb|EFY17657.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322623852|gb|EFY20689.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322627300|gb|EFY24091.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322630607|gb|EFY27371.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322638174|gb|EFY34875.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322640660|gb|EFY37311.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322645556|gb|EFY42083.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322648150|gb|EFY44617.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322657101|gb|EFY53384.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322657472|gb|EFY53744.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322663791|gb|EFY59991.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322666624|gb|EFY62802.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322672218|gb|EFY68330.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322676471|gb|EFY72542.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322679437|gb|EFY75482.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322686235|gb|EFY82219.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323195111|gb|EFZ80294.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197562|gb|EFZ82697.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323201168|gb|EFZ86237.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323212185|gb|EFZ97009.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323216489|gb|EGA01215.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323220633|gb|EGA05081.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323225882|gb|EGA10102.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323236810|gb|EGA20886.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323239690|gb|EGA23737.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323242263|gb|EGA26292.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323249925|gb|EGA33821.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323252354|gb|EGA36205.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323255638|gb|EGA39391.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323262926|gb|EGA46476.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323265411|gb|EGA48907.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323271802|gb|EGA55220.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|363549626|gb|EHL33961.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363551291|gb|EHL35610.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363552960|gb|EHL37237.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363560375|gb|EHL44522.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363568507|gb|EHL52485.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|363573169|gb|EHL57056.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|366060439|gb|EHN24702.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. 80959-06]
gi|366079291|gb|EHN43278.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Montevideo str. CT_02035327]
Length = 437
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 159 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 259
>gi|205359858|ref|ZP_02832814.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205342490|gb|EDZ29254.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
Length = 454
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S +
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSEN 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGFETYQQLREYNLFQPLFPTITRYFTENG 276
>gi|34497087|ref|NP_901302.1| polynucleotide adenylyltransferase [Chromobacterium violaceum ATCC
12472]
gi|34102944|gb|AAQ59308.1| polynucleotide adenylyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 450
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 128/253 (50%), Gaps = 10/253 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
ML PKDFD+ T+A ++V +F + I+G+RF I HV +EV++F R S
Sbjct: 65 MLGVSPKDFDVATNATPEQVHHLFRRSRIIGRRFRIVHVMMGPETIEVTTF----RGGSV 120
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D E R I D + + +RDFT+N L +DP + + DY G++D+ K+ +
Sbjct: 121 DDTNETGR-IMADNSFGSQEEDAHRRDFTVNALFYDPSDETVIDYHHGVKDLHAKKLVMI 179
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+ +QED R+LRA+R+AA+LGF +T ++ + + K RL E+ +L
Sbjct: 180 GQPARRYQEDPVRMLRAVRLAAKLGFEIDEDTKKPIRAHAHLLKKEPPARLFDELLKLLM 239
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G A A L+ L + GL + P+ A + G + + L LSL N D L D+P
Sbjct: 240 SGHAYACLKKLREEGLARGVFPLLDAVIDDKG----GEDAFLKLSL-DNTDARLRADKPI 294
Query: 241 HSSLWIAILAFHK 253
+A L + +
Sbjct: 295 SVGFLLATLLWRQ 307
>gi|389701948|ref|ZP_10185346.1| poly(A) polymerase [Leptothrix ochracea L12]
gi|388591067|gb|EIM31339.1| poly(A) polymerase [Leptothrix ochracea L12]
Length = 567
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 135/281 (48%), Gaps = 33/281 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A +V +F + I+G+RF + HV F E+ ++EVS+F
Sbjct: 78 LLGHRPKDFDVATNATPAQVKALFRRAFIIGRRFQLVHVVFGRGREHEVIEVSTFRALME 137
Query: 54 -----SGRRFSRDFKYEFERPIGCDE---------KDFIRW----RNCLQRDFTINGLMF 95
R R K E +G +D + W + +RDFTIN L +
Sbjct: 138 PAEVAPVRGNERTSKAEL---VGKSHAVDASGRVLRDNV-WGPQDEDAARRDFTINALYY 193
Query: 96 DPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHF 155
DP +++ DY GIED K ++ + S F+ED RI+R +R AA+LGF T
Sbjct: 194 DPARQVVIDYHHGIEDAAKRVLRMIGDPSARFREDPVRIIRVVRFAAKLGFEIEPHTRAP 253
Query: 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL-VKHGFR 214
++ ++ + + R+ EM +L G A ASL L K GL L PI A L H
Sbjct: 254 MRKMADLLANVPASRVFDEMIKLLQTGHALASLEELRKQGLHRGLFPILDAVLDAAHQHN 313
Query: 215 RRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKAL 255
R+K L L ++ D+ +A +P S +A + +H L
Sbjct: 314 GREKFIQLAL---NDTDRRVAEGKPVAPSFMLACMLWHDVL 351
>gi|365103891|ref|ZP_09333552.1| Poly(A) polymerase [Citrobacter freundii 4_7_47CFAA]
gi|363644504|gb|EHL83785.1| Poly(A) polymerase [Citrobacter freundii 4_7_47CFAA]
Length = 454
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 29/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ + ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LEEGIIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + + L ++ L + L P Y + G ++ ++ + N D
Sbjct: 236 FEEALKLLQAGYGYETYKKLREYSLFQPLFPTITRYFTEDGDSPMER---IIAQVLKNTD 292
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
+ D + + A + ++ PL+ A +A +G +A +A +N
Sbjct: 293 NRIHNDMRVNPAFLFAAMFWY---------PLLEAAQKIAQESGLAYYDAFALA--MNDV 341
Query: 292 HDESFCELLEPRDL 305
DE+ L P+ L
Sbjct: 342 LDEACRSLAIPKRL 355
>gi|238911251|ref|ZP_04655088.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
Length = 437
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 159 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 259
>gi|114332256|ref|YP_748478.1| poly(A) polymerase [Nitrosomonas eutropha C91]
gi|114309270|gb|ABI60513.1| poly(A) polymerase [Nitrosomonas eutropha C91]
Length = 462
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 150/336 (44%), Gaps = 63/336 (18%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+DI+T A +EV +F I+G+RF + HV + VEVS+F
Sbjct: 68 LLGLKPKDYDIVTDATPEEVRAIFRHSRIIGRRFRLVHVMSKGETVEVSTFRGKAADDLI 127
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+GR +F G E+D R RDFTIN L ++P + I
Sbjct: 128 QSDKECAYIDATGRLLHDNF-------FGSQEEDVRR------RDFTINALFYNPATEEI 174
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
DY+ G ED+ ++ + ++ED R+LRA+R+AA+LG + TA + L+P
Sbjct: 175 IDYLSGFEDVMAKRLNIIGDPEQRYREDPVRMLRAVRLAAKLGIQIDDRTAAPIGDLAPL 234
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+L + RL EM +L G A ++ L GL LLP+ L + R
Sbjct: 235 LLNVPAARLFDEMLKLLFSGHALTAVIDLRTRGLHHGLLPMLDVILEQPLGER------- 287
Query: 223 LLSL-FSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNG------ 275
+SL N D+ + +P A L +H+ V+AV+++ + G
Sbjct: 288 FISLALKNTDERVRQGKPVSPGFLFAALLWHE----------VLAVWNIHLKAGEKNIPA 337
Query: 276 ------GDMLEAVKIARRINKSHDESFCEL--LEPR 303
GD+L A + I + HD ++ L+PR
Sbjct: 338 LLHRAMGDVLAAQRRRLAIPRRHDGVIYDIWSLQPR 373
>gi|409248608|ref|YP_006884449.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|320084436|emb|CBY94229.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
Length = 472
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S +
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSEN 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGNGFETYQQLREYNLFQPLFPTITRYFTENG 294
>gi|365837109|ref|ZP_09378489.1| polynucleotide adenylyltransferase [Hafnia alvei ATCC 51873]
gi|364562687|gb|EHM40521.1| polynucleotide adenylyltransferase [Hafnia alvei ATCC 51873]
Length = 507
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 115 LLGKQPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEHAGD 174
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
G+ S+ + + G E+D R RDFTIN L + + DY GG+ D
Sbjct: 175 GKNISQQAQNGMLLRDNVYGNIEEDAQR------RDFTINSLYYSISDFTVRDYTGGLRD 228
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ +++ + T ++ED R+LRA+R AA+L +TA + L+ + ++ RL
Sbjct: 229 LQEGRIRLIGDPETRYREDPVRMLRAVRFAAKLDMTICPQTAEPIPRLAALLHEIPSARL 288
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G A+ +LL ++ L + L P+ + + +G
Sbjct: 289 FEESLKLLQSGYGFATYKLLCEYQLFQPLFPVISRHFTPNG 329
>gi|261493336|ref|ZP_05989862.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261496601|ref|ZP_05992981.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261307804|gb|EEY09127.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261310980|gb|EEY12157.1| polyA polymerase [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 443
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 132/256 (51%), Gaps = 8/256 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFDI T+A +E+ R+F QC ++G+RF + H+ + I EV++F +G
Sbjct: 49 LLEKKPKDFDIATNARPEEIQRIFGRQCRLIGRRFRLAHIVYGREIFEVATFR-AGHESH 107
Query: 60 RDFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
R+ K G +D + + +RDFT+N L +D +I+D+ GIED+R K
Sbjct: 108 RNDKISKVSDEGMLLRDNVYGTLRDDAERRDFTVNALYYDIKRNLIFDFFNGIEDLRAGK 167
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
+ + + +QED R+LRA+R A+L + TA ++ ++ + + RL E
Sbjct: 168 LSLIGEPAIRYQEDPVRMLRAVRFMAKLDMFLDKATASPIRDMAALLTNIPAARLFDESL 227
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L G+ + +LL ++ L + L P+ A+ G ++ ++ ++ D+ +A
Sbjct: 228 KLLQTGAGLKTYQLLREYELWQFLFPVLPAFFTVKGDSYAER---MITKALNSTDERIAD 284
Query: 237 DRPCHSSLWIAILAFH 252
P + + A L ++
Sbjct: 285 KLPVNPAFLFAALLWY 300
>gi|205357046|ref|ZP_02344374.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205324360|gb|EDZ12199.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
Length = 437
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 159 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGNGYETYQQLREYHLFQPLFPNITRYFTENG 259
>gi|242240239|ref|YP_002988420.1| poly(A) polymerase I [Dickeya dadantii Ech703]
gi|242132296|gb|ACS86598.1| poly(A) polymerase [Dickeya dadantii Ech703]
Length = 449
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 145/311 (46%), Gaps = 25/311 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A ++V ++F C +VG+RF + HV F ++EV++F +
Sbjct: 54 LLGKKPKDFDITTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEVIEVATFRGHHEQHQ- 112
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL--------QRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ + + D+ + N +RDF+IN L + + DY G+ D+
Sbjct: 113 --EQQVKNASQQDQNGMLLRDNIFGTIEEDAQRRDFSINSLYYSIADFTVRDYTNGVNDL 170
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
R+ ++ + T ++ED R+LRA+R AA+LG + S ETA + LS + + RL
Sbjct: 171 RQGIIRLLGDPETRYREDPVRMLRAVRFAAKLGMKISPETAEPIPRLSSLLHDIPPARLF 230
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E +L G + +LL ++ L + L P+ + L +G +L+ + N D+
Sbjct: 231 EEALKLLQAGYGYPTYQLLCEYQLFQPLFPLLSRDLTANG---ESTMERMLVQVLKNTDQ 287
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSH 292
+ D + + + + ++ PLV L +G EA +A +N
Sbjct: 288 RIQNDMRVNPAFLFSAMLWY---------PLVEHAQKLTQESGLAYFEAFALA--MNDVL 336
Query: 293 DESFCELLEPR 303
DE L P+
Sbjct: 337 DEQCRSLAIPK 347
>gi|415814235|ref|ZP_11505865.1| poly(A) polymerase family protein [Escherichia coli LT-68]
gi|323171311|gb|EFZ56959.1| poly(A) polymerase family protein [Escherichia coli LT-68]
Length = 454
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+LG R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P ++G
Sbjct: 236 FEESLKLLQAGYGYDTYKLLCEYHLFQPLFPTITRNFTENG 276
>gi|152981224|ref|YP_001354564.1| poly(A) polymerase [Janthinobacterium sp. Marseille]
gi|151281301|gb|ABR89711.1| poly(A) polymerase [Janthinobacterium sp. Marseille]
Length = 455
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L PKDFDI T+A ++V R+F + I+GKRF I HV F ++EV++F S
Sbjct: 66 LLGVKPKDFDIATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQDLLEVTTFRGASTEAAP 125
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+D R E+ + L+RDFTIN + +DP + + DY GG+ DIR ++
Sbjct: 126 KDEHGRVLRDNTFGEQH----EDALRRDFTINAMYYDPATQTVLDYHGGMADIRNKTLRI 181
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ ++ED R+LR +R AA+L F +T+ ++ ++P I + R+ EM +L
Sbjct: 182 IGVPEARYREDPVRMLRVVRFAAKLNFSIDPDTSAPIRVMAPLINNVPAARVFDEMLKLL 241
Query: 180 AYGSAEASLRLLWK 193
GSA A L+ L K
Sbjct: 242 MSGSALACLQQLRK 255
>gi|262273771|ref|ZP_06051584.1| poly(A) polymerase [Grimontia hollisae CIP 101886]
gi|262222186|gb|EEY73498.1| poly(A) polymerase [Grimontia hollisae CIP 101886]
Length = 451
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 145/311 (46%), Gaps = 28/311 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------S 52
+LN+ PKDFDI T+A +EV ++F C +VG+RF + H+ F ++EV++F S
Sbjct: 59 LLNKQPKDFDIATNATPEEVRKLFRNCRLVGRRFRLAHILFGRDVIEVATFRGHHAGDKS 118
Query: 53 TSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
S D + G ++D R RDFTIN L ++ + DY GG+ED+
Sbjct: 119 DKAAARSNDGMLLRDNVYGTIDEDAER------RDFTINALYYNIDDFSVRDYAGGVEDL 172
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
+ ++ + T ++ED R+LRA+R AA+L R + TA + L+ + + RL
Sbjct: 173 KNRTIRLIGDPETRYREDPVRMLRAVRFAAKLDMRINEATAAPIPALAHLLRDIPAARLF 232
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E +L G A+ RLL F L L P+ + + + +K L+L + D
Sbjct: 233 EESLKLLQSGQGLATYRLLRDFNLFSPLFPLLDEHFTEDHSSKCEKMLELVL---KSTDA 289
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSH 292
+A D+ + + A + ++ PL +A +G +A +A N
Sbjct: 290 RVAKDQRINPAFMFAAMLWY---------PLETRAEEIAFESGLSYYDAFMVA--ANDIL 338
Query: 293 DESFCELLEPR 303
DE + PR
Sbjct: 339 DEQVKSIAIPR 349
>gi|399116645|emb|CCG19452.1| poly(A) polymerase [Taylorella asinigenitalis 14/45]
Length = 451
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 115/241 (47%), Gaps = 27/241 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
ML ++PKDFD+ T A E+ +F + I+GKRF + HV F I+E S+F SG
Sbjct: 63 MLGQVPKDFDVTTDATPLEIKPLFRRALIIGKRFKLVHVMFGPEIIETSTFRASGELPED 122
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R D Y G E D R RDFTIN + +DP +I+YDY G DI+
Sbjct: 123 SDGRILSDNNY------GTIETDANR------RDFTINAMYYDPIDEIVYDYHNGFRDIK 170
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+++ + ++ED R+LRAIR A +LG + T + LS I + R+
Sbjct: 171 NLQIRMIGEPEKRYREDPVRMLRAIRFAGKLGANIATSTYEPISRLSHLISNVPDSRIFD 230
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPI--------QAAYLVKHGFRRRDKRSNLLLS 225
E +L G + +R L K L + LP+ + ++ F R D+R L S
Sbjct: 231 ETFKLLTCGDSLYCIRELRKLKLDKGTLPLLDKVLALESSEKFLQIAFERTDQRVRLNKS 290
Query: 226 L 226
+
Sbjct: 291 I 291
>gi|149190136|ref|ZP_01868412.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio shilonii
AK1]
gi|148836025|gb|EDL52986.1| tRNA nucleotidyltransferase/poly(A) polymerase [Vibrio shilonii
AK1]
Length = 449
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 121/233 (51%), Gaps = 17/233 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 63 LLGEQPKDFDIATNATPEQIKKLFRNCRLIGRRFRLAHIMFGRDIIEVATF--------R 114
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
E E+ + K+ + R+ + +RDF+IN + ++ I+DY GG+ED
Sbjct: 115 GHHQEQEKNVSQQSKEGMLLRDNVYGSIDEDAERRDFSINAMYYNIGDYSIHDYAGGMED 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + ++ED R+LRAIR AA+L F +TA ++ L+P + + RL
Sbjct: 175 LEDRLIRLIGEPEVRYREDPVRMLRAIRFAAKLDFDIEEDTAAPIEELAPLLRDIPSARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL 224
E +L G + LL ++ L + L PI A + + R ++ +L+L
Sbjct: 235 YEESLKLLQSGYGLETYHLLREYNLFQQLFPIIAPHFTEEYSSRTEQVLDLVL 287
>gi|218547599|ref|YP_002381390.1| poly(A) polymerase I [Escherichia fergusonii ATCC 35469]
gi|218355140|emb|CAQ87747.1| poly(A) polymerase I [Escherichia fergusonii ATCC 35469]
Length = 472
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVS 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L + S ETA + L+ + + RL
Sbjct: 194 LKEGIIRLIGNPETRYREDPVRMLRAVRFAAKLNMQISPETAEPIPRLAALLNDVPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGYGYETYKLLREYHLFQPLFPTITRYFTENG 294
>gi|414864627|tpg|DAA43184.1| TPA: hypothetical protein ZEAMMB73_451476, partial [Zea mays]
Length = 248
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 82/125 (65%), Gaps = 8/125 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVR-VFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L R+PKDFD+IT+A L+++ + +F + IVGKRFPIC + ++++E+SSF T +
Sbjct: 117 LLKRVPKDFDVITTASLEQLKKNIFRRSRIVGKRFPICLLKMRDSVIEISSFRTVANYGN 176
Query: 60 R----DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
R D+ E G D +D +RW++ ++RDFTINGL F+P IYDY+ G+ D+RK
Sbjct: 177 RSEVVDYVAELN---GSDVRDILRWKDSMRRDFTINGLFFNPMNCKIYDYVNGVRDMRKN 233
Query: 116 KVQTV 120
KV
Sbjct: 234 KVTVT 238
>gi|422009755|ref|ZP_16356738.1| poly(A) polymerase I [Providencia rettgeri Dmel1]
gi|414093573|gb|EKT55245.1| poly(A) polymerase I [Providencia rettgeri Dmel1]
Length = 448
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 71/262 (27%), Positives = 131/262 (50%), Gaps = 19/262 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C +VG+RF + H+ F I+EV++F + +
Sbjct: 53 LLGQKPKDFDITTNATPEQIRKLFRNCRLVGRRFRLAHIMFGPEIIEVATFRGHHDQNAS 112
Query: 61 DFKYEFERP----------IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
D K + G E+D IR RDFT+N L ++ + DY+ G+
Sbjct: 113 DDKNLSAQAQNGMLLRDNIFGSIEEDAIR------RDFTVNSLYYNIEDFTLRDYVNGLN 166
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D++ ++ + T ++ED R+LRA+R A +L +TA + L+ + ++ R
Sbjct: 167 DLKAGVIRLIGDPETRYREDPVRMLRAVRFACKLNMSIEPKTAEPIYQLAHLLREIPSAR 226
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L E +L G A+ ++L K+GL E L P+ A+ + +K ++ + N
Sbjct: 227 LFEESLKLLQAGQGYATYKMLKKYGLFEQLFPVVASRFTDNSDSPMEK---IIEQVLKNT 283
Query: 231 DKLLAPDRPCHSSLWIAILAFH 252
D L D+ + + A++ ++
Sbjct: 284 DFRLKNDKRVNPAFLFAVMLWY 305
>gi|326796836|ref|YP_004314656.1| poly(A) polymerase [Marinomonas mediterranea MMB-1]
gi|326547600|gb|ADZ92820.1| poly(A) polymerase [Marinomonas mediterranea MMB-1]
Length = 479
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 113/227 (49%), Gaps = 17/227 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD++T+A +EV +FS ++G+RF I HV F I+EVS+F +
Sbjct: 74 PKDFDVVTNATPEEVNDLFSNSRLIGRRFRIVHVTFGREIIEVSTFRANTANNPPPIPKH 133
Query: 66 FERPIGCDEKDFIR-----------W----RNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
E KD R W + +RDFT N L F+ + I+D+ G++
Sbjct: 134 DENK-SLKNKDTARSSHGIILRDNVWGSIDEDAQRRDFTFNALYFNIADRSIHDFCNGLQ 192
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
DI +++ + ++ED R+LRAIR A +LGF ETA +K ++ + + R
Sbjct: 193 DIENKQIRIIGDPRERYKEDPVRMLRAIRFAGKLGFDIEPETAAPIKEMAHLLDHIPPAR 252
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRD 217
L E+ +L G + LL ++GL + L P A L G++R+D
Sbjct: 253 LFEEVLKLLGSGQGVTTFYLLREYGLFKYLFPDTDAIL-NSGWKRKD 298
>gi|317493240|ref|ZP_07951662.1| poly(A) polymerase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918633|gb|EFV39970.1| poly(A) polymerase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 507
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 115 LLGKQPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEHAGD 174
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
G+ S+ + + G E+D R RDFTIN L + + DY GG+ D
Sbjct: 175 GKNISQQAQNGMLLRDNVYGNIEEDAQR------RDFTINSLYYSISDFTVRDYTGGLRD 228
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ +++ + T ++ED R+LRA+R AA+L +TA + L+ + ++ RL
Sbjct: 229 LQEGRIRLIGDPETRYREDPVRMLRAVRFAAKLDMTICPQTAEPIPRLAALLHEIPSARL 288
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G A+ +LL ++ L + L P+ + + +G
Sbjct: 289 FEESLKLLQSGYGFATYKLLCEYQLFQPLFPVISRHFTPNG 329
>gi|77164400|ref|YP_342925.1| Poly(A) polymerase, PcnB [Nitrosococcus oceani ATCC 19707]
gi|254434825|ref|ZP_05048333.1| poly(A) polymerase subfamily [Nitrosococcus oceani AFC27]
gi|76882714|gb|ABA57395.1| Poly(A) polymerase, PcnB [Nitrosococcus oceani ATCC 19707]
gi|207091158|gb|EDZ68429.1| poly(A) polymerase subfamily [Nitrosococcus oceani AFC27]
Length = 401
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 125/255 (49%), Gaps = 14/255 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR-FS 59
+L R PKDFD+ T A +++ +F C +VG+RF + H+ F I+E ++F S
Sbjct: 23 LLGREPKDFDVTTDARPEQIRDLFRSCRLVGRRFRLAHLRFGREIIETATFRGPPEEGLS 82
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + + G E+D WR RDF++N L ++ + DY G+ED+ +++
Sbjct: 83 ENGRIVSDNVYGTLEQD--AWR----RDFSVNALYYNIRDFSVVDYTRGMEDLEAGRLRL 136
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ T ++ED R+LRA+R AA+LGF ++ + L+PS+ ++ RL E+ +
Sbjct: 137 IGDPVTRYREDPVRMLRAVRFAAKLGFTLHPDSETPIWELAPSLQEIPSARLFEEILKLF 196
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYL--VKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
G A + LL +F L L P A L + GF R L +N D +A
Sbjct: 197 LGGCAVQTFELLRRFNLFRWLFPQTEACLGEEEQGFPR-----IFLAQALNNTDARIAAG 251
Query: 238 RPCHSSLWIAILAFH 252
+P + A L +
Sbjct: 252 KPVTPAFLFAALLWE 266
>gi|315634141|ref|ZP_07889430.1| poly(A) polymerase [Aggregatibacter segnis ATCC 33393]
gi|315477391|gb|EFU68134.1| poly(A) polymerase [Aggregatibacter segnis ATCC 33393]
Length = 485
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 127/251 (50%), Gaps = 8/251 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ VF QC +VG+RF + HV F I+EV++F +G
Sbjct: 94 LLGKKPKDFDVATNARPEQIQAVFQRQCRLVGRRFRLAHVMFGREIIEVATFR-AGHAEH 152
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K + G +D + ++ +RDF++N L ++P + DY GIED++ K
Sbjct: 153 HNEKLAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDYFNGIEDLKNGK 212
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K L+ + + RL E
Sbjct: 213 LRLIGDPVTRYQEDPVRMLRSIRFMAKLEMFLDKPSEAPIKSLAHLLKNIPPARLFEESL 272
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L G + +LL ++GL E L P+ Y + R ++L + D+ +A
Sbjct: 273 KLLQSGHGVKTYQLLRQYGLFEQLFPLLPTYFTE---REDSMAEKMILRALISTDERVAD 329
Query: 237 DRPCHSSLWIA 247
P + + A
Sbjct: 330 KLPINPAFLFA 340
>gi|322437026|ref|YP_004219238.1| metal dependent phosphohydrolase [Granulicella tundricola MP5ACTX9]
gi|321164753|gb|ADW70458.1| metal dependent phosphohydrolase [Granulicella tundricola MP5ACTX9]
Length = 456
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 108/211 (51%), Gaps = 17/211 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ TSA ++ +F + VG F + V + VE ST F
Sbjct: 33 LLGKTPKDFDVATSATPDQITALFPRTLQVGAHFGVILVQMD---VEGEPTSTEVATFRH 89
Query: 61 DFKYEFERPIGCDEKDFIRW-----RNCLQRDFTINGLMFDPYAK----IIYDYIGGIED 111
D Y R D +R+ + L+RDFTING++ DP+A+ I D++GG D
Sbjct: 90 DGAYSDGR-----RPDAVRFSTDPREDVLRRDFTINGMLLDPFAEGSDNAILDFVGGRND 144
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++T+ T F+ED R+LRA+R AARL F TA + + I ++ R+
Sbjct: 145 LAVKIIRTIGSPDTRFEEDKLRMLRAVRFAARLSFAIDPNTAAAITRHAAEIFQVSNERI 204
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
E+ ML G+A + LL++ GLL +LP
Sbjct: 205 RDELTLMLTEGNAHRAFELLYQTGLLHHILP 235
>gi|238022809|ref|ZP_04603235.1| hypothetical protein GCWU000324_02721 [Kingella oralis ATCC 51147]
gi|237866012|gb|EEP67148.1| hypothetical protein GCWU000324_02721 [Kingella oralis ATCC 51147]
Length = 594
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 110/210 (52%), Gaps = 19/210 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ TSA ++V R+F + I+G+RF I HV + +EVS+F + GR R
Sbjct: 217 PKDFDVATSATPEQVHRLFRRSRIIGRRFQIVHVMQGSETIEVSTFRSGGRVMQNASGRI 276
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
RD Y G E+D +R RDFT N L +D A+ + D+ GG ED+ ++
Sbjct: 277 MRDNAY------GSLEQDAMR------RDFTCNALYYDVAAQQVLDFHGGWEDVAVRRLV 324
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ A+ +QED R+LRA R++ +LGF TA + + + RL E+ +
Sbjct: 325 MIGDAAERYQEDPVRMLRAARLSGKLGFAVEAATAAPIGEMGLLLRHEPVARLFDELLKI 384
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
L G+A L L + GL E + P+ +A L
Sbjct: 385 LLSGNAAGCLAALRRLGLTEAVHPLLSAML 414
>gi|206578248|ref|YP_002240384.1| poly(A) polymerase I [Klebsiella pneumoniae 342]
gi|288937089|ref|YP_003441148.1| poly(A) polymerase [Klebsiella variicola At-22]
gi|290512511|ref|ZP_06551877.1| poly(A) polymerase [Klebsiella sp. 1_1_55]
gi|206567306|gb|ACI09082.1| poly(A) polymerase [Klebsiella pneumoniae 342]
gi|288891798|gb|ADC60116.1| poly(A) polymerase [Klebsiella variicola At-22]
gi|289774852|gb|EFD82854.1| poly(A) polymerase [Klebsiella sp. 1_1_55]
Length = 453
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 128/258 (49%), Gaps = 6/258 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D + G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 122 DRVTSQQGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVI 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL E+
Sbjct: 182 RLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPLPRLATLLHDVPPARLFEEVLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + LL ++ L + L P Y + G ++ ++ + N D + D
Sbjct: 242 LLQAGYGYQTYMLLREYNLFQPLFPTITRYFTERGDSPMER---IISQVLKNTDNRIHND 298
Query: 238 RPCHSSLWIAILAFHKAL 255
+ + A++ ++ L
Sbjct: 299 MRVNPAFLFAVMFWYPLL 316
>gi|431926168|ref|YP_007239202.1| poly(A) polymerase [Pseudomonas stutzeri RCH2]
gi|431824455|gb|AGA85572.1| poly(A) polymerase [Pseudomonas stutzeri RCH2]
Length = 464
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/267 (30%), Positives = 123/267 (46%), Gaps = 35/267 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKD+D+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 67 LLQLNPKDYDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPEEDD 126
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP + I
Sbjct: 127 DDASHLASRNESGR-ILRDNIY------GTLEDDAQR------RDFTINALYYDPTTERI 173
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
D+ G+ DIR ++ + +QED R+LRA+R AA+L F R +A + L+
Sbjct: 174 LDHTRGVHDIRNRLIRLIGDPEQRYQEDPVRMLRAVRFAAKLDFEIERHSAEPIVELADL 233
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNL 222
+ + RL E+ + G AE + LL ++ L L P AA L R + L
Sbjct: 234 LDGIPSARLFDEVLKLFLGGKAERTFELLLEYDLFAPLFPASAAALE----RDPEYAGTL 289
Query: 223 LLSLFSNLDKLLAPDRPCHSSLWIAIL 249
+ + +N D + +P + A L
Sbjct: 290 IRNALANTDLRIQQGKPVTPAFLFAAL 316
>gi|388259523|ref|ZP_10136696.1| polynucleotide adenylyltransferase [Cellvibrio sp. BR]
gi|387936961|gb|EIK43519.1| polynucleotide adenylyltransferase [Cellvibrio sp. BR]
Length = 459
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 128/270 (47%), Gaps = 22/270 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L PKDFD+ T+A EV R+F IVG+RF I HV ++EV++F S+
Sbjct: 72 LLGGHPKDFDVATNATPDEVKRIFRSARIVGRRFQIVHVRMGREVIEVTTFRGHHDDSSQ 131
Query: 55 GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
S D + G E D +R RDFT+N L + + DY G+ D++
Sbjct: 132 HAARSEDGMLLRDNVYGTLETDAMR------RDFTVNALYYTLKDFSVIDYCDGMSDLKT 185
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + +T ++ED RILRA+R AA+LGF TA ++ L +L + RL E
Sbjct: 186 RTLRMIGDPATRYKEDPVRILRALRFAAKLGFTLEPNTAKPIRELGGLLLNVSDARLFEE 245
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLL 234
+ + GSA A+ L+ + LL LLP L K G + +NL+ N DK +
Sbjct: 246 VLKLFLNGSATATFALMRDYDLLVHLLPGTDKAL-KAG---DEVGANLIEQCMINTDKRV 301
Query: 235 APDRPCHSS------LWIAILAFHKALSDQ 258
+ + LW A+ K LS Q
Sbjct: 302 RSGKTVTPAFIYAALLWPALQQQFKVLSSQ 331
>gi|332288744|ref|YP_004419596.1| hypothetical protein UMN179_00667 [Gallibacterium anatis UMN179]
gi|330431640|gb|AEC16699.1| conserved hypothetical protein [Gallibacterium anatis UMN179]
Length = 502
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 110/206 (53%), Gaps = 5/206 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L++ PKDFD+ T+A +++ ++F QC +VG+RF + H+ F I+EV++F + +
Sbjct: 99 LLDKTPKDFDVATNARPEQIQKIFQRQCRLVGRRFRLAHILFGREIIEVATFRAAHDAIN 158
Query: 60 RDFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
D K + G +D + + +RDFT+N +DP +YD+ GI+D+R +
Sbjct: 159 ND-KLAKQSAEGMLLRDNVYGSLEDDAARRDFTVNAFYYDPRKDKLYDFFNGIKDLRAGR 217
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
+ + + +QED R+LRAIR A+L ++ + L+ + + RL E
Sbjct: 218 LMLIGDPTQRYQEDPVRMLRAIRFMAKLDMFLDKKCEQPIYQLASLLQNIPAARLFDESL 277
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLP 202
+L G E + +LL+K+ L L P
Sbjct: 278 KLLQTGKGEKTYQLLYKYQLFHQLFP 303
>gi|213423730|ref|ZP_03356710.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
Length = 262
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 111/215 (51%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHNEGSES 104
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D+++ +
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLQEGVI 164
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL E
Sbjct: 165 RLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLLNDIPPARLFEESLK 224
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G+ + + L ++ L + L P Y ++G
Sbjct: 225 LLQAGNGFETYQQLREYHLFQPLFPTITRYFTENG 259
>gi|354721591|ref|ZP_09035806.1| poly(A) polymerase I [Enterobacter mori LMG 25706]
Length = 447
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F S
Sbjct: 55 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGVS 114
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 115 DRTTSQQGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 168
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L R S ET + L+ I + RL
Sbjct: 169 LKEGLIRLIGTPETRYREDPVRMLRAVRFAAKLNMRISPETGEPIPRLATLINDVPPARL 228
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + LL ++ L + L P ++G
Sbjct: 229 FEEALKLLQAGYGFETYNLLREYSLFQPLFPTITRCFTENG 269
>gi|406980089|gb|EKE01749.1| hypothetical protein ACD_21C00060G0002 [uncultured bacterium]
Length = 435
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 114/236 (48%), Gaps = 23/236 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI+T A+ ++V ++F C ++G+RF + HV F IVEV++F S
Sbjct: 69 LLGLHPKDFDIVTDAQPEQVRKLFRNCILIGRRFRLAHVRFGRDIVEVATFRAGAEHNSE 128
Query: 61 DFKYE------FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
K + G E+D WR RDFT+N L + + DY GI+D++
Sbjct: 129 KHKKSEHGMLLRDNVYGTIEED--AWR----RDFTVNALYYRIKDHSVIDYTDGIKDLKT 182
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + ++ED R+LRAIR+AA+LGF + TA +K L P + + RL E
Sbjct: 183 KTIRMLGDPLVRYREDPVRMLRAIRLAAKLGFTIEKHTAAPIKELIPLLENISPARLFEE 242
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL-----------VKHGFRRRDKR 219
+ G LL ++ L L AA L ++HGF DKR
Sbjct: 243 VVKWFRSGKTLEIFNLLQQYDLFAFLFGSAAASLKGGKHKITTAMLRHGFTNTDKR 298
>gi|385330067|ref|YP_005884018.1| polyA polymerase [Marinobacter adhaerens HP15]
gi|311693217|gb|ADP96090.1| polyA polymerase [Marinobacter adhaerens HP15]
Length = 443
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 145/318 (45%), Gaps = 44/318 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR--- 57
+L PKDFDI T+A +EV +F ++G+RF I HV F ++EV++F +
Sbjct: 58 LLGGKPKDFDIATNATPEEVHDLFRNSRLIGRRFRIVHVVFGREVIEVTTFRGNAAEADT 117
Query: 58 --------------FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
RD Y G E+D L+RDFT+N L + +
Sbjct: 118 DTDDDDRRTSEHGLLLRDNVY------GNQEED------ALRRDFTVNALYYCIRDFTVI 165
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
D+ GIED+R +++ + T ++ED R+LRAIR AA+LGF ET + L+P +
Sbjct: 166 DFANGIEDLRNRQLRLIGDPETRYREDPVRMLRAIRFAAKLGFDIEPETEAPIGELAPLL 225
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + + G EA+ LL ++ LLE L P + ++ G + L+
Sbjct: 226 THIPPARLFDEVLKLFSAGHGEATYDLLTRYNLLEPLFP-ETVRAIESG-----EPDELI 279
Query: 224 LSLFSNLDKLLAPDRPCH------SSLWIAILA-FHKALSDQPRDPLVVAVFSLAVYNGG 276
N D +A + + LW A+ A +H+ + DP+ A+ G
Sbjct: 280 RQALRNTDARIAQGKSVTPYFLFAAMLWPALQAEWHRRQDNG--DPVQPALHGAIGKVIG 337
Query: 277 DMLEAVKIARRINKSHDE 294
++A I +R + E
Sbjct: 338 RQVQATSIPKRFSGPMKE 355
>gi|449111711|ref|ZP_21748280.1| poly(A) polymerase [Treponema denticola ATCC 33521]
gi|449113482|ref|ZP_21749987.1| poly(A) polymerase [Treponema denticola ATCC 35404]
gi|448956982|gb|EMB37735.1| poly(A) polymerase [Treponema denticola ATCC 33521]
gi|448959692|gb|EMB40411.1| poly(A) polymerase [Treponema denticola ATCC 35404]
Length = 380
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 29/216 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
++ +PKDFDI TSAE ++ ++F ++G+RF + H+ F I EVS+F ST
Sbjct: 61 LIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVHIFFGEKIYEVSTFRSTEDGSIG 120
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F G ++D R RDFT+N L +DP +++ DY+ G++DIR K++
Sbjct: 121 NKF--------GTIDEDVHR------RDFTLNALYYDPIHELVIDYVDGVKDIRAKKIRP 166
Query: 120 VIPASTSFQEDCARILRAIRIAARL--GFRF-----SRETAHFVKHLSPSILKLDRGRLL 172
+IP F ED R++RAI+ AA G F R+ AH ++ +SPS R+
Sbjct: 167 IIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFFLQLQIRKNAHLLEFVSPS-------RIT 219
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
E+N ++ G A ++ L F L L P A++
Sbjct: 220 EEINKIIFSGHASDIIKKLLDFKLYVCLQPGACAFI 255
>gi|42527232|ref|NP_972330.1| polyA polymerase [Treponema denticola ATCC 35405]
gi|422342210|ref|ZP_16423150.1| PolyA polymerase [Treponema denticola F0402]
gi|449102447|ref|ZP_21739196.1| poly(A) polymerase [Treponema denticola AL-2]
gi|449109207|ref|ZP_21745845.1| poly(A) polymerase [Treponema denticola ATCC 33520]
gi|449119894|ref|ZP_21756285.1| poly(A) polymerase [Treponema denticola H1-T]
gi|449122290|ref|ZP_21758634.1| poly(A) polymerase [Treponema denticola MYR-T]
gi|41817656|gb|AAS12241.1| polyA polymerase family protein [Treponema denticola ATCC 35405]
gi|325474278|gb|EGC77466.1| PolyA polymerase [Treponema denticola F0402]
gi|448948770|gb|EMB29603.1| poly(A) polymerase [Treponema denticola MYR-T]
gi|448948893|gb|EMB29723.1| poly(A) polymerase [Treponema denticola H1-T]
gi|448959853|gb|EMB40571.1| poly(A) polymerase [Treponema denticola ATCC 33520]
gi|448966419|gb|EMB47075.1| poly(A) polymerase [Treponema denticola AL-2]
Length = 380
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 29/216 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
++ +PKDFDI TSAE ++ ++F ++G+RF + H+ F I EVS+F ST
Sbjct: 61 LIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVHIFFGEKIYEVSTFRSTEDGSIG 120
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F G ++D R RDFT+N L +DP +++ DY+ G++DIR K++
Sbjct: 121 NKF--------GTIDEDVHR------RDFTLNALYYDPIHELVIDYVDGVKDIRAKKIRP 166
Query: 120 VIPASTSFQEDCARILRAIRIAARL--GFRF-----SRETAHFVKHLSPSILKLDRGRLL 172
+IP F ED R++RAI+ AA G F R+ AH ++ +SPS R+
Sbjct: 167 IIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFFLQLQIRKNAHLLEFVSPS-------RIT 219
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
E+N ++ G A ++ L F L L P A++
Sbjct: 220 EEINKIIFSGHASDIIKKLLDFKLYVYLQPGACAFI 255
>gi|350563658|ref|ZP_08932479.1| poly(A) polymerase [Thioalkalimicrobium aerophilum AL3]
gi|349778793|gb|EGZ33144.1| poly(A) polymerase [Thioalkalimicrobium aerophilum AL3]
Length = 470
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 130/258 (50%), Gaps = 20/258 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVF-SQCEIVGKRFPICHVHFENTIVEVSSF------ST 53
ML PKDFDI+T+A +V +VF +C+++G+RF + HV + I+EV++F +
Sbjct: 78 MLGIEPKDFDIVTNASPDQVKQVFRHRCQLIGRRFRLAHVRYGRLIIEVATFRGGQDDNH 137
Query: 54 SGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R+ + + G ++D WR RDFTIN L +DP ++ DY+ G ED++
Sbjct: 138 PARQIDDSGRLLRDNVYGTMDEDV--WR----RDFTINALYYDPKRDVVIDYVDGREDLQ 191
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
A++ + ++ED R++RA+R AA+LGF + + L + ++ RL
Sbjct: 192 AAQIALIGDPWVRYREDPVRMIRAVRFAAKLGFNLAPSAEAPIAELGGLLKEVSNARLFD 251
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG--FRRRDKRSNLLLSLFSNLD 231
E+ + G+A L + L + L P+ A L F R+ L++ + D
Sbjct: 252 EVLKLFHSGAAILVFEKLRHYDLFKHLFPLTDAILATENEHFPRQ-----LVIEALQSTD 306
Query: 232 KLLAPDRPCHSSLWIAIL 249
+ +A D+P + + A +
Sbjct: 307 RRIAEDKPVNPAFLFAAM 324
>gi|449107566|ref|ZP_21744220.1| poly(A) polymerase [Treponema denticola ASLM]
gi|451969259|ref|ZP_21922488.1| poly(A) polymerase [Treponema denticola US-Trep]
gi|448961766|gb|EMB42461.1| poly(A) polymerase [Treponema denticola ASLM]
gi|451701963|gb|EMD56405.1| poly(A) polymerase [Treponema denticola US-Trep]
Length = 380
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 29/216 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
++ +PKDFDI TSAE ++ ++F ++G+RF + H+ F I EVS+F ST
Sbjct: 61 LIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVHIFFGEKIYEVSTFRSTEDGSIG 120
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F G ++D R RDFT+N L +DP +++ DY+ G++DIR K++
Sbjct: 121 NKF--------GTIDEDVHR------RDFTLNALYYDPIHELVIDYVDGVKDIRAKKIRP 166
Query: 120 VIPASTSFQEDCARILRAIRIAARL--GFRF-----SRETAHFVKHLSPSILKLDRGRLL 172
+IP F ED R++RAI+ AA G F R+ AH ++ +SPS R+
Sbjct: 167 IIPLQLIFSEDPVRMIRAIKYAAMTNSGIPFFLQLQIRKNAHLLEFVSPS-------RIT 219
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
E+N ++ G A ++ L F L L P A++
Sbjct: 220 EEINKIIFSGHASDIIKKLLDFKLYVYLQPGACAFI 255
>gi|449123786|ref|ZP_21760108.1| poly(A) polymerase [Treponema denticola OTK]
gi|448944039|gb|EMB24921.1| poly(A) polymerase [Treponema denticola OTK]
Length = 380
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 29/216 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
++ +PKDFDI TSAE ++ ++F ++G+RF + H+ F I EVS+F ST
Sbjct: 61 LIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVHIFFGEKIYEVSTFRSTEDGSIG 120
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F G ++D R RDFT+N L +DP +++ DY+ G++DIR K++
Sbjct: 121 NKF--------GTIDEDVHR------RDFTLNALYYDPIHELVIDYVDGVKDIRAKKIRP 166
Query: 120 VIPASTSFQEDCARILRAIRIAARL--GFRF-----SRETAHFVKHLSPSILKLDRGRLL 172
+IP F ED R++RAI+ AA G F R+ AH ++ +SPS R+
Sbjct: 167 IIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFFLQLQIRKNAHLLEFVSPS-------RIT 219
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
E+N ++ G A ++ L F L L P A++
Sbjct: 220 EEINKIIFSGHASDIIKKLLDFKLYVYLQPGACAFI 255
>gi|380513176|ref|ZP_09856583.1| poly(a) polymerase [Xanthomonas sacchari NCPPB 4393]
Length = 422
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 125/258 (48%), Gaps = 17/258 (6%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST-----SGRRFSR 60
PKDFD+ T A ++V ++F C ++G+RF + HV + I+EV++F SG R
Sbjct: 28 PKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVYGREIIEVATFRANVDDGSGDREVD 87
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
+ + + G E D +R RDFT N L + + DY+GG ED++ ++ +
Sbjct: 88 NGRLVRDNVYGSIEDDAVR------RDFTCNALYYAIEDFSVRDYVGGFEDVQARLMKLI 141
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
++ED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 142 GDPEQRYREDPVRMLRAVRLAAKLDFEIEAGTAEPIPRLAGLLAEAAPARLFEEVLKLFL 201
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L + GLL L P AA L + R +L+ N D +A D P
Sbjct: 202 SGHGVASFEGLERHGLLAALFPESAAALRSN---RSGALRRMLIEGLRNTDNRVANDEPV 258
Query: 241 HSSLWIAIL---AFHKAL 255
+ A+L A+ +AL
Sbjct: 259 SPAFLFALLLWPAYCRAL 276
>gi|449116061|ref|ZP_21752514.1| poly(A) polymerase [Treponema denticola H-22]
gi|448954581|gb|EMB35358.1| poly(A) polymerase [Treponema denticola H-22]
Length = 380
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 29/216 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
++ +PKDFDI TSAE ++ ++F ++G+RF + H+ F I EVS+F ST
Sbjct: 61 LIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVHIFFGEKIYEVSTFRSTEDGSIG 120
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F G ++D R RDFT+N L +DP +++ DY+ G++DIR K++
Sbjct: 121 NKF--------GTIDEDVHR------RDFTLNALYYDPIHELVIDYVDGVKDIRAKKIRP 166
Query: 120 VIPASTSFQEDCARILRAIRIAARL--GFRF-----SRETAHFVKHLSPSILKLDRGRLL 172
+IP F ED R++RAI+ AA G F R+ AH ++ +SPS R+
Sbjct: 167 IIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFFLQLQIRKNAHLLEFVSPS-------RIT 219
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
E+N ++ G A ++ L F L L P A++
Sbjct: 220 EEINKIIFSGHASDIIKKLLDFKLYVYLQPGACAFI 255
>gi|268591287|ref|ZP_06125508.1| hypothetical protein PROVRETT_07561 [Providencia rettgeri DSM 1131]
gi|291313263|gb|EFE53716.1| polyA polymerase [Providencia rettgeri DSM 1131]
Length = 539
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 132/256 (51%), Gaps = 7/256 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L + PKDFDI T+A +++ ++F C +VG+RF + H+ F I+EV++F + S
Sbjct: 144 LLGQKPKDFDITTNATPEQIRKLFRNCRLVGRRFRLAHIMFGPEIIEVATFRGHHDQNVS 203
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
D + G +D I + ++RDFT+N L ++ + DY+ G++D++
Sbjct: 204 DDKNLSAQAQNGMLLRDNIFGSIEEDAIRRDFTVNSLYYNIEDFTLRDYVNGLKDLKAGV 263
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T ++ED R+LRA+R A +L +TA + L+ + ++ RL E
Sbjct: 264 IRLIGDPETRYREDPVRMLRAVRFACKLNMSIEPKTAEPIYQLAHLLREIPSARLFEESL 323
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L G A+ ++L K+GL E L P+ A+ + +K ++ + N D L
Sbjct: 324 KLLQAGQGYATYKMLKKYGLFEQLFPVVASRFTDNSDSPMEK---IIEQVLKNTDFRLKN 380
Query: 237 DRPCHSSLWIAILAFH 252
D+ + + A++ ++
Sbjct: 381 DKRVNPAFLFAVMLWY 396
>gi|421844765|ref|ZP_16277922.1| poly(A) polymerase I [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|411774244|gb|EKS57754.1| poly(A) polymerase I [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|455643738|gb|EMF22862.1| poly(A) polymerase I [Citrobacter freundii GTC 09479]
Length = 437
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 149/314 (47%), Gaps = 29/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S +
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSEA 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ + ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 159 LEEGIIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + + L ++ L + L P Y + G ++ ++ + N D
Sbjct: 219 FEEALKLLQAGYGYETYKKLREYSLFQPLFPTITRYFTEDGDSPMER---IIAQVLKNTD 275
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
+ D + + A + ++ PL+ A +A +G +A +A +N
Sbjct: 276 NRINNDMRVNPAFLFAAMFWY---------PLLEAAQKIAQESGLAYYDAFALA--MNDV 324
Query: 292 HDESFCELLEPRDL 305
DE+ L P+ L
Sbjct: 325 LDEACRSLAIPKRL 338
>gi|395764137|ref|ZP_10444806.1| poly(A) polymerase [Janthinobacterium lividum PAMC 25724]
Length = 460
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 108/193 (55%), Gaps = 3/193 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A ++V R+F + I+GKRF I HV F ++EV++F +G +
Sbjct: 67 LLGVKPKDFDIATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQDLLEVTTFRGAGADSAP 126
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
K E R + D ++ + L+RDFTIN + ++P + + DY GG+EDIR ++ +
Sbjct: 127 --KDEHGR-VLRDNTFGLQHEDALRRDFTINAMYYNPATQEVLDYHGGVEDIRAQTLRMI 183
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
++ED R+LR +R AA+L F TA + ++P I + R+ EM +L
Sbjct: 184 GKPEERYREDPVRMLRVVRFAAKLKFTIEPHTAAPIPIMAPLINNVPAPRVFDEMLKLLM 243
Query: 181 YGSAEASLRLLWK 193
G A A L+ L K
Sbjct: 244 SGHALACLQQLRK 256
>gi|358447891|ref|ZP_09158401.1| poly(A) polymerase [Marinobacter manganoxydans MnI7-9]
gi|357227892|gb|EHJ06347.1| poly(A) polymerase [Marinobacter manganoxydans MnI7-9]
Length = 454
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/318 (28%), Positives = 145/318 (45%), Gaps = 44/318 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR--- 57
+L PKDFDI T+A +EV +F ++G+RF I HV F ++EV++F +
Sbjct: 70 LLGGKPKDFDIATNATPEEVHDLFRNSRLIGRRFRIVHVVFGREVIEVTTFRGNAAEADT 129
Query: 58 --------------FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
RD Y G E+D L+RDFT+N L + +
Sbjct: 130 DTDDDDRRTSEHGLLLRDNVY------GNQEED------ALRRDFTVNALYYCIRDFTVI 177
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
D+ GIED+R +++ + T ++ED R+LRAIR AA+LGF ET + L+P +
Sbjct: 178 DFANGIEDLRNRQLRLIGDPETRYREDPVRMLRAIRFAAKLGFDIEPETEAPIGELAPLL 237
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + + G EA+ LL ++ LLE L P + ++ G + L+
Sbjct: 238 THIPPARLFDEVLKLFSAGHGEATYDLLTRYNLLEPLFP-ETVRAIESG-----EPDELI 291
Query: 224 LSLFSNLDKLLAPDRPCH------SSLWIAILA-FHKALSDQPRDPLVVAVFSLAVYNGG 276
N D +A + + LW A+ A +H+ + DP+ A+ G
Sbjct: 292 RQALRNTDARIAQGKSVTPYFLFAAMLWPALQAEWHRRQDNG--DPVQPALHGAIGKVIG 349
Query: 277 DMLEAVKIARRINKSHDE 294
++A I +R + E
Sbjct: 350 RQVQATSIPKRFSGPMKE 367
>gi|422013198|ref|ZP_16359826.1| poly(A) polymerase I [Providencia burhodogranariea DSM 19968]
gi|414103406|gb|EKT64981.1| poly(A) polymerase I [Providencia burhodogranariea DSM 19968]
Length = 450
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 149/302 (49%), Gaps = 15/302 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L + PKDFDI T+A +++ ++F C +VG+RF + H+ F ++EV++F +
Sbjct: 53 LLGKKPKDFDITTNATPEQIRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHDQNLP 112
Query: 60 RDFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
D + G +D I + ++RDFT+N L ++ + DY+GG++D++
Sbjct: 113 EDKNMSQQAQNGMLLRDNIFGSIEDDAIRRDFTVNSLYYNIDDFSVRDYVGGLQDLKDGI 172
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T ++ED R+LRA+R A +L R TA + L+P + ++ RL E
Sbjct: 173 IRMIGDPETRYREDPVRMLRAVRFACKLDMRIEPNTAQPIYQLAPLLREIPSARLFEESL 232
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L G ++ ++L ++ L + L P+ ++ +H +K ++ + N D L
Sbjct: 233 KLLQAGQGYSTYKMLIEYHLFDHLFPVISSRFSEHNDSPMEK---IIEQVLKNTDFRLKN 289
Query: 237 DRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNG-GDMLEAVKIARRIN 289
D+ + + LW + + LS Q F+LA+ + D ++ I +RI
Sbjct: 290 DKRVNPAFLFAAMLWYPVTEHAEKLS-QEGGLAYYDAFALAMNDVLDDQCRSIAIPKRIT 348
Query: 290 KS 291
+
Sbjct: 349 TT 350
>gi|312883975|ref|ZP_07743692.1| polyA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368433|gb|EFP95968.1| polyA polymerase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 451
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 145/299 (48%), Gaps = 20/299 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 63 LLGQNPKDFDIATNATPEQIRQLFKNCRLIGRRFRLAHIMFGRDIIEVATF--------R 114
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
E + + KD + R+ + +RDFT+N + ++ I+DY G+ED
Sbjct: 115 GHHQEPSKNVSQQSKDGMLLRDNVYGSIDEDAERRDFTVNAMYYNIGDYSIHDYASGVED 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ V+ + T ++ED R+LRAIR A +L F +TA ++ L+ + + RL
Sbjct: 175 LEDKLVRLIGDPETRYREDPVRMLRAIRFAVKLDFDIEEDTAEPIERLALLLQDIPAARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL-SLFSNL 230
E ML G + L+ ++GL + L P A Y ++ +L+L S L
Sbjct: 235 YEESLKMLQSGYGLETYHLMREYGLFQQLFPTIAEYFTDDYSSMTEQMLDLVLDSTDQRL 294
Query: 231 D--KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARR 287
+ K + P + LW + K +S+Q + + A+ + + + + ++ I RR
Sbjct: 295 EDGKRINPAFMFAAMLWYPLQEKAKHISEQRQISMYDAIMEASNHVLDEQVRSIAIPRR 353
>gi|333906705|ref|YP_004480291.1| poly(A) polymerase [Marinomonas posidonica IVIA-Po-181]
gi|333476711|gb|AEF53372.1| poly(A) polymerase [Marinomonas posidonica IVIA-Po-181]
Length = 479
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 127/260 (48%), Gaps = 15/260 (5%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF----------STSG 55
PKDFD++T+A +EV +FS ++G+RF + HV F I+EVS+F S
Sbjct: 74 PKDFDVVTNATPEEVHAIFSNSRLIGRRFRLVHVTFGREIIEVSTFRANTAQEETPSPGA 133
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S K G +D + + +RDFT N L ++ I+DY GG+ DI
Sbjct: 134 TQTSLKDKDSARSTHGIILRDNVYGNIEEDAERRDFTFNALYYNVQDFSIHDYCGGLADI 193
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
+ +++ + +QED R+LRAIR A +LGF+ TA +K ++ + + RL
Sbjct: 194 KNKQIRIIGDPKQRYQEDPVRMLRAIRFAGKLGFQIEASTAAPIKEMAHLLDHIPPARLF 253
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRD-KRSNLLLSLFSNLD 231
E+ +L G+ + LL ++GL L P A L++ G++R D +L N D
Sbjct: 254 EEVLKLLGSGNGIRTFALLREYGLFRYLFPDTDA-LLQSGWKRDDIDPEAFILRGLKNTD 312
Query: 232 KLLAPDRPCHSSLWIAILAF 251
+ + + AIL +
Sbjct: 313 ERIQSGKSTAPYFLYAILMW 332
>gi|449131460|ref|ZP_21767674.1| poly(A) polymerase [Treponema denticola SP37]
gi|448939160|gb|EMB20078.1| poly(A) polymerase [Treponema denticola SP37]
Length = 380
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 113/216 (52%), Gaps = 29/216 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
++ +PKDFDI TSAE ++ ++F ++G+RF + H+ F I EVS+F ST
Sbjct: 61 LIGHVPKDFDIATSAEPSKIRKMFRNSRVIGRRFRLVHIFFGEKIYEVSTFRSTEDGSIG 120
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F G ++D R RDFT+N L +DP +++ DY+ G++DIR K++
Sbjct: 121 NKF--------GTIDEDVHR------RDFTLNALYYDPIHELVIDYVDGVKDIRAKKIRP 166
Query: 120 VIPASTSFQEDCARILRAIRIAARL--GFRF-----SRETAHFVKHLSPSILKLDRGRLL 172
+IP F ED R++RAI+ AA G F R+ AH ++ +SPS R+
Sbjct: 167 IIPLQLIFSEDPVRMIRAIKYAAMTDSGIPFFLQLQIRKNAHLLEFVSPS-------RIT 219
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
E+N ++ G A ++ L F L L P A++
Sbjct: 220 EEINKIIFSGHASDIIKKLLDFKLYVYLQPGACAFI 255
>gi|404398381|ref|ZP_10989965.1| poly(A) polymerase [Pseudomonas fuscovaginae UPB0736]
Length = 462
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 107/219 (48%), Gaps = 29/219 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ TSA +++ F I+G+RF + H+HF I+EV++F
Sbjct: 67 LLGITPKDFDVATSATPEQIRAEFRNARIIGRRFKLVHIHFGREIIEVATFRANHPQDED 126
Query: 52 ----STSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
+ S R R RD Y G E D R RDFTIN L +DP ++ I
Sbjct: 127 EEDSNQSSRNESGRILRDNVY------GTLEDDAQR------RDFTINALYYDPVSERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR ++ + + +QED R+LRA+R AA+L F R T ++ L+ +
Sbjct: 175 DYANGVHDIRNRLIRLIGDPTRRYQEDPVRMLRAVRFAAKLDFGIERHTVAPIRDLAAML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
++ RL E+ + G A + +L L E L P
Sbjct: 235 REIPSARLFEEVLKLFLSGHAADTFEMLVDLNLFEPLFP 273
>gi|291086145|ref|ZP_06354946.2| polyA polymerase [Citrobacter youngae ATCC 29220]
gi|291069510|gb|EFE07619.1| polyA polymerase [Citrobacter youngae ATCC 29220]
Length = 454
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 149/314 (47%), Gaps = 29/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S +
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSEA 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ + ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LEEGIIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + + L ++ L + L P Y + G ++ ++ + N D
Sbjct: 236 FEEALKLLQAGYGYETYKKLREYSLFQPLFPTITRYFTEDGDSPMER---IIAQVLKNTD 292
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
+ D + + A + ++ PL+ A +A +G +A +A +N
Sbjct: 293 NRINNDMRVNPAFLFAAMFWY---------PLLEAAQKIAQESGLAYYDAFALA--MNDV 341
Query: 292 HDESFCELLEPRDL 305
DE+ L P+ L
Sbjct: 342 LDEACRSLAIPKRL 355
>gi|395229106|ref|ZP_10407422.1| polyA polymerase [Citrobacter sp. A1]
gi|424729205|ref|ZP_18157807.1| polya polymerase [Citrobacter sp. L17]
gi|394717159|gb|EJF22857.1| polyA polymerase [Citrobacter sp. A1]
gi|422895929|gb|EKU35715.1| polya polymerase [Citrobacter sp. L17]
Length = 454
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 149/314 (47%), Gaps = 29/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S +
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSEA 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ + ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LEEGIIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + + L ++ L + L P Y + G ++ ++ + N D
Sbjct: 236 FEEALKLLQAGYGYETYKKLREYSLFQPLFPTITRYFTEDGDSPMER---IIAQVLKNTD 292
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
+ D + + A + ++ PL+ A +A +G +A +A +N
Sbjct: 293 NRINNDMRVNPAFLFAAMFWY---------PLLEAAQKIAQESGLAYYDAFALA--MNDV 341
Query: 292 HDESFCELLEPRDL 305
DE+ L P+ L
Sbjct: 342 LDEACRSLAIPKRL 355
>gi|357404037|ref|YP_004915961.1| poly(A) polymerase [Methylomicrobium alcaliphilum 20Z]
gi|351716702|emb|CCE22364.1| Poly(A) polymerase [Methylomicrobium alcaliphilum 20Z]
Length = 498
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 25/215 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGR--- 56
+L R PKDFD++T A +V ++F C +VG+RF + HVHF I+EV++F +G
Sbjct: 109 LLGREPKDFDVVTDAHPDQVRKIFRNCRLVGRRFRLAHVHFGREIIEVATFRGNAGEVPD 168
Query: 57 ---------RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIG 107
R RD Y G E+D WR RDFT+N L ++ + DY+G
Sbjct: 169 DDLLLNDEGRLVRDNIY------GTIEEDV--WR----RDFTVNSLYYNIRDFSVTDYVG 216
Query: 108 GIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLD 167
G+ D + ++ + T ++ED R+LRAIR A +LGF + + L+ + +
Sbjct: 217 GMADHKTGTLRLIGDPETRYREDPVRMLRAIRFAVKLGFTLHPDCEKPITDLAELLHHIP 276
Query: 168 RGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
RL E + G A + +L +GL ++L P
Sbjct: 277 PARLFDEAIKLFLSGHALQTFEMLRHYGLFQILFP 311
>gi|313201844|ref|YP_004040502.1| poly(a) polymerase [Methylovorus sp. MP688]
gi|312441160|gb|ADQ85266.1| poly(A) polymerase [Methylovorus sp. MP688]
Length = 455
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 15/309 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A ++V RVF + I+G+RF + HV F + VEVS+F S
Sbjct: 74 LLKKRPKDFDVATNATPEQVNRVFRRSRIIGRRFRLVHVLFGDETVEVSTFRGSHLNDDG 133
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D K I D + + L+RDFT N L +DP ++ + D+ G EDI+ ++ +
Sbjct: 134 DAKIADSGRILRDNVFGSQEDDALRRDFTANALYYDPSSEDVLDFHNGYEDIQAGILRMI 193
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
T ++ED R+LRAIR++A+LG + + T + L+ + ++ RL EM +
Sbjct: 194 GDPVTRYREDPVRMLRAIRLSAKLGLKLDKATEAPIPKLADELQEVPASRLFDEMLKLFL 253
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G A S++ L + GL LLP+ L + R + N D+ + D+P
Sbjct: 254 SGYAMESVKALRQHGLHHGLLPLLDVVLEQPMGER------FVTLALKNTDERVLQDKPV 307
Query: 241 HSSLWIAILAFHKALSD----QPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESF 296
S A L +H+ L+ Q + LA++ D ++A K+A I+K + +
Sbjct: 308 SPSFLFATLLWHEVLTAWQQYQDNGERPIPALHLAMHEVCD-IQAEKLA--IHKRYSTTM 364
Query: 297 CEL--LEPR 303
E+ ++PR
Sbjct: 365 KEIWGMQPR 373
>gi|90416970|ref|ZP_01224899.1| poly(A) polymerase [gamma proteobacterium HTCC2207]
gi|90331317|gb|EAS46561.1| poly(A) polymerase [gamma proteobacterium HTCC2207]
Length = 453
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 14/205 (6%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFSRDFKY 64
PKDFD+ TSA+ EV +F + I+G+RF I HV F I+EV++F S S + S++ +
Sbjct: 70 PKDFDVATSAKPWEVKELFRRSRIIGRRFQIVHVQFSREIIEVTTFRSNSSQSTSKNRRQ 129
Query: 65 EFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ + + G E+D R RD T+N L +DP I+D+ GI+D+ +
Sbjct: 130 QTDSGMLTRDNVFGTVEEDASR------RDLTVNALYYDPSTNSIHDFTNGIDDVDAKII 183
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T F+ED R+LR R AA+LGF TA+ +KH + + ++ RL E
Sbjct: 184 RIIGDPETRFREDPVRLLRVARFAAKLGFNIEPATANPMKHRAADLQQVSPPRLFDETLK 243
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLP 202
+ G + ++L + L + ++P
Sbjct: 244 LFMSGQGLDTFKILVEHRLFDYIVP 268
>gi|53803591|ref|YP_114728.1| poly(A) polymerase [Methylococcus capsulatus str. Bath]
gi|53757352|gb|AAU91643.1| polyA polymerase [Methylococcus capsulatus str. Bath]
Length = 438
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 105/213 (49%), Gaps = 23/213 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFS-------- 52
+L R PKDFD++T A +E+ VF C ++G+RF + HVHF I+EV++F
Sbjct: 88 LLGREPKDFDVVTDAHPEEIKAVFRNCRLIGRRFRLAHVHFGEEIIEVATFRALTREPHD 147
Query: 53 ---TSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
T G R RD Y G E+D R RDFT+N L ++ + DY+GG+
Sbjct: 148 EHVTEGGRILRDNVY------GTIEEDAFR------RDFTVNALYYNISDFSVIDYVGGM 195
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
+D R A ++ + ++ED R+LRAIR A +LGF A + L+ + +
Sbjct: 196 DDHRNASLRLIGDPEQRYREDPVRMLRAIRFAVKLGFTLHPSCAEPIHRLADLLRDIPAA 255
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
RL E+ + G A + L F L L P
Sbjct: 256 RLYDEIVKLFLAGYAVQTFEQLRHFRLFGSLFP 288
>gi|322417672|ref|YP_004196895.1| poly(A) polymerase [Geobacter sp. M18]
gi|320124059|gb|ADW11619.1| poly(A) polymerase [Geobacter sp. M18]
Length = 471
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 118/248 (47%), Gaps = 44/248 (17%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTS------ 54
+L R PKDFD++T A ++ ++F C ++G+RF + H+HF + I+EV++F ++
Sbjct: 51 LLGREPKDFDVVTDATPAQLKKLFRNCRLIGRRFRLAHLHFHDEIIEVATFRSTVDAAEA 110
Query: 55 -----------------------GRRF---------SRDFKYEFERPIGCDEKDFIRWRN 82
GRR S D + G E+D IR
Sbjct: 111 AAEEAPEAVPEPSEAELLEHEREGRRRGHHGPKMLKSEDGMVLRDNVFGTPEEDAIR--- 167
Query: 83 CLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAA 142
RDFT+N L + I D++GG+ED++ ++T+ F ED R++RAIR A+
Sbjct: 168 ---RDFTVNALFYSIADFSIIDHVGGMEDLKNGLIRTIGDPMVRFTEDPVRMIRAIRFAS 224
Query: 143 RLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
LGF T ++ L +I K RL E+ +L G+ E + ++L GL E L P
Sbjct: 225 MLGFNIEPRTEAAIEELCGTINKATPPRLYEEVLKLLLMGAGERTYQMLRHSGLFEPLFP 284
Query: 203 IQAAYLVK 210
A+L +
Sbjct: 285 HFDAWLSR 292
>gi|451936646|ref|YP_007460500.1| poly(A) polymerase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777569|gb|AGF48544.1| poly(A) polymerase [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 430
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 19/249 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFDI T+A +++ +F + I+GKRF + HV F I+E+S+F +S +D E
Sbjct: 67 PKDFDIATNATPEQIKHIFKRARIIGKRFRLVHVIFYKEIIEISTFRSSPIDIKQD---E 123
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
F R + G +D R RDFTIN L +D ++II DY G+ D++K +V +
Sbjct: 124 FGRILTDNYFGSQSEDSNR------RDFTINSLYYDANSEIIIDYHDGVYDLKKKQVNLI 177
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
AS ++ED RILRAIR A+++ S +T +++ I + + RL E+ +L
Sbjct: 178 GEASIRYREDPVRILRAIRFASKINGSISPDTLKYIEKQKELIANIPQARLFDELIKILT 237
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G+A L + L L+P ++ ++ D + L +SL ++L
Sbjct: 238 CGNALKCLLEIKSNNLHTFLIPT-----LEETLKKTDSMNFLKISLDETDQRILNSKSVS 292
Query: 241 HSSLWIAIL 249
S L AIL
Sbjct: 293 SSFLLAAIL 301
>gi|254516607|ref|ZP_05128666.1| poly(A) polymerase [gamma proteobacterium NOR5-3]
gi|219675030|gb|EED31397.1| poly(A) polymerase [gamma proteobacterium NOR5-3]
Length = 404
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 132/279 (47%), Gaps = 28/279 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFDI T A +EV +FS I+G+RF I HV F ++EV++F
Sbjct: 22 LLGGHPKDFDIATDATPEEVHALFSNSRIIGRRFRIVHVRFGREVIEVTTFRGHHDDGDP 81
Query: 52 -STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+ +R SR + G E+D +R RD T+N L +D + ++D +GG++
Sbjct: 82 TGPAAKRSSRGLLLR-DNVFGTLEEDAVR------RDLTVNALYYDSGSFEVFDQVGGLD 134
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+ +V+ + + ++ED R+LR +R AA+L FR + + + L+ + + R
Sbjct: 135 DLEARQVRVIGDPAKRYREDPVRMLRTLRFAAKLDFRVEKGSGAPIAELASLLDDIPAAR 194
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L E + G+A+ +LRLL ++ + L P A F R LL + N
Sbjct: 195 LFDEFGKLFLAGNAQLTLRLLREYRCFDHLFPDSARLADTDPFYDR-----LLDAAMGNT 249
Query: 231 DKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPL 263
D+ + +P + LW A+ + L Q P+
Sbjct: 250 DQRIRQGKPVTPAFILAAILWPAVCERRQQLEKQGEKPV 288
>gi|149917655|ref|ZP_01906151.1| poly(A) polymerase [Plesiocystis pacifica SIR-1]
gi|149821437|gb|EDM80837.1| poly(A) polymerase [Plesiocystis pacifica SIR-1]
Length = 486
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 34/223 (15%)
Query: 2 LNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR---- 57
LNR PKDFD+ TSA +++ RVF I+G+RF + HV F + I+E S+F T+ +
Sbjct: 66 LNRKPKDFDVATSARPEQIRRVFRNSRIIGRRFKLAHVFFGSKIIETSTFRTNPKEEEHA 125
Query: 58 ------------------FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYA 99
+ D + D KD R +RDFTINGL +D
Sbjct: 126 ATSEGDAAAEGGGGGDLLITHDNSW-------GDIKDDAR-----RRDFTINGLFYDIER 173
Query: 100 KIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHL 159
+ I D++ G+ D+ + ++T+ F+ED R++RAI+ AARL F ++ +
Sbjct: 174 RAIVDFVDGVRDLDRGIIRTIGEPEVRFREDPVRMIRAIKFAARLDFTVEMDSWQALLRC 233
Query: 160 SPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
+P I + R RL+ E+ +L GS+ + L+ + L + + P
Sbjct: 234 APDIARCSRARLVEELYKLLRGGSSRRAFELMIQAELFQHIWP 276
>gi|402845082|ref|ZP_10893429.1| polynucleotide adenylyltransferase [Klebsiella sp. OBRC7]
gi|423106484|ref|ZP_17094185.1| Poly(A) polymerase [Klebsiella oxytoca 10-5242]
gi|376377921|gb|EHS90688.1| Poly(A) polymerase [Klebsiella oxytoca 10-5242]
gi|402272682|gb|EJU21900.1| polynucleotide adenylyltransferase [Klebsiella sp. OBRC7]
Length = 454
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 145/306 (47%), Gaps = 17/306 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 122 DRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVI 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL E+
Sbjct: 182 RLIGDPETRYREDPVRMLRAVRFAAKLSMSISEETAEPIPRLATLLHDVPPARLFEEVLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + LL ++ L + L P Y + G ++ ++ + N D + D
Sbjct: 242 LLQAGDGYQTYLLLREYNLFQPLFPTITRYFTERGDSPMER---IISQVLKNTDNRIRND 298
Query: 238 RPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFC 297
+ + A++ ++ PL+ +A +G +A +A +N DE+
Sbjct: 299 MRVNPAFLFAVMFWY---------PLLETAQKIAQESGLAYYDAFALA--MNDVLDEACR 347
Query: 298 ELLEPR 303
L P+
Sbjct: 348 TLAIPK 353
>gi|297180382|gb|ADI16599.1| tRNA nucleotidyltransferase/poly(a) polymerase [uncultured gamma
proteobacterium HF0010_01E20]
Length = 447
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 112/216 (51%), Gaps = 5/216 (2%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T+A L+ V ++F + IVGKRFPI HV F ++EVS+F S S ++
Sbjct: 88 PKDFDVATNATLETVRQLFRRSRIVGKRFPIVHVRFGRDLIEVSTFRQS---ISDKIVHD 144
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
+ I D + +RDFT N L +DP + I D++ G+ DI++ ++ + T
Sbjct: 145 DKGMILRDNAFGTLHEDAFRRDFTANALYYDPNSDEIIDFVDGVADIKRKLLRFIGDPKT 204
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAE 185
ED R+LRAIR +A+LGF ++ ++ + S+ + RL E + G AE
Sbjct: 205 RLAEDPVRMLRAIRFSAKLGFSIDQQILNYTNETANSLKTVSPARLFDEFLKLFLSGYAE 264
Query: 186 ASLRLLWKFGLLEVLLP--IQAAYLVKHGFRRRDKR 219
R + + + L P I ++ LV R D+R
Sbjct: 265 QVWRQVRETPIAGALFPCCIPSSPLVLAAMRNTDER 300
>gi|397656014|ref|YP_006496716.1| Poly(A) polymerase [Klebsiella oxytoca E718]
gi|394344647|gb|AFN30768.1| Poly(A) polymerase [Klebsiella oxytoca E718]
Length = 454
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 145/306 (47%), Gaps = 17/306 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 122 DRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVI 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL E+
Sbjct: 182 RLIGDPETRYREDPVRMLRAVRFAAKLSMSISEETAEPIPRLATLLHDVPPARLFEEVLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + LL ++ L + L P Y + G ++ ++ + N D + D
Sbjct: 242 LLQAGDGYQTYLLLREYNLFQPLFPTITRYFTERGDSPMER---IISQVLKNTDNRIRND 298
Query: 238 RPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFC 297
+ + A++ ++ PL+ +A +G +A +A +N DE+
Sbjct: 299 MRVNPAFLFAVMFWY---------PLLETAQKIAQESGLAYYDAFALA--MNDVLDEACR 347
Query: 298 ELLEPR 303
L P+
Sbjct: 348 TLAIPK 353
>gi|260771220|ref|ZP_05880147.1| poly(A) polymerase [Vibrio furnissii CIP 102972]
gi|375130001|ref|YP_004992100.1| polyA polymerase [Vibrio furnissii NCTC 11218]
gi|260613817|gb|EEX39009.1| poly(A) polymerase [Vibrio furnissii CIP 102972]
gi|315179174|gb|ADT86088.1| polyA polymerase [Vibrio furnissii NCTC 11218]
Length = 456
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 112/216 (51%), Gaps = 13/216 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F I+EV++F + ++
Sbjct: 65 LLGGKPKDFDVATNATPEQIRQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQENNK 124
Query: 61 DFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ E + G ++D R RDFTIN + ++ I+DY GG+ED+
Sbjct: 125 QIASQSEAGMLLRDNVYGTIDEDAER------RDFTINAMYYNIADYSIHDYAGGMEDMD 178
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LRAIR A +L F ETA ++HL+P + + RL
Sbjct: 179 DKLIRLIGDPETRYREDPVRMLRAIRFAVKLDFDIEEETAAPIEHLAPLLRDIPAARLYE 238
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
E ML G + L+ ++ L + L P A +
Sbjct: 239 ESLKMLQSGYGLETYHLMREYNLFQQLFPTIARHFT 274
>gi|56461352|ref|YP_156633.1| poly(A) polymerase [Idiomarina loihiensis L2TR]
gi|56180362|gb|AAV83084.1| Poly(A) polymerase [Idiomarina loihiensis L2TR]
Length = 462
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 127/260 (48%), Gaps = 29/260 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----------STS 54
PKDFD+ T+A +++ +F C ++G+RF + HV F ++EV++F +
Sbjct: 70 PKDFDVTTNATPEQIKSLFRNCRLIGRRFRLAHVVFGKEVIEVATFRGHHGASPQEENKK 129
Query: 55 GRRFSRDFKYEFERP--IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
R +D + R G E+D R RDFT N L ++ IYD+ G++DI
Sbjct: 130 NRTADQDEHGQLVRDNVYGSIEEDAER------RDFTANALYYNIADFAIYDFANGVDDI 183
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
++ + ++ED R+LRA+R A +L + + +K L+P ++ + RL
Sbjct: 184 NAGILRMIGDPEVRYREDPVRMLRAVRFATKLNMQMDNSVSGPLKELAPLLINIPPARLF 243
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRS---NLLLSLFSN 229
E M G AEA+ ++ FGL + L P+ Y+ D++S ++L F +
Sbjct: 244 DEFLKMFMSGKAEANFLMMKDFGLFQQLFPMLKDYVA-------DEQSPAYQMMLKAFKD 296
Query: 230 LDKLLAPDRPCHSSLWIAIL 249
D+ +A ++ + IA+L
Sbjct: 297 TDRRIAEEQRVTPAYLIAVL 316
>gi|319944457|ref|ZP_08018731.1| poly(A) polymerase [Lautropia mirabilis ATCC 51599]
gi|319742418|gb|EFV94831.1| poly(A) polymerase [Lautropia mirabilis ATCC 51599]
Length = 488
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/205 (32%), Positives = 107/205 (52%), Gaps = 8/205 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFD+ T A + V +F + I+G+RF I HV F +EV++F +
Sbjct: 94 LLGRAPKDFDVATDASPEAVQSLFRRARIIGRRFRIVHVMFGRETIEVTTFRAAHTNGQT 153
Query: 61 DFKYEF--ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
D + G E+D R RDFT+N L +DP A+ + D +GG++D+ ++
Sbjct: 154 DAHGRMLNDNVFGTREEDAYR------RDFTVNALYYDPIAETLIDPMGGVDDLSARLLR 207
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ +T ++ED R+LR +R AA+L F+ T ++ L+P + + RL E+ +
Sbjct: 208 MIGDPTTRYREDPVRMLRTVRFAAKLDFQVDPPTLQPIRTLAPLLENVPPARLFDEVMKL 267
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPI 203
L G A L+ L GL +LP+
Sbjct: 268 LESGHGLACLQRLRHEGLHHGILPL 292
>gi|285017990|ref|YP_003375701.1| poly(a) polymerase [Xanthomonas albilineans GPE PC73]
gi|283473208|emb|CBA15713.1| probable poly(a) polymerase protein [Xanthomonas albilineans GPE
PC73]
Length = 481
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 128/260 (49%), Gaps = 21/260 (8%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A ++V ++F C ++G+RF + HV + I+EV++F + S D + +
Sbjct: 87 PKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVYGREIIEVATFRANVDDGSGDRELD 146
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D L+RDFT N L + + DY GG ED++ ++ +
Sbjct: 147 NGRLVRDNVYGSIEDD------ALRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLI 200
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
++ED R+LRA+R+AA+LGF+ TA + L+ + + RL E+ +
Sbjct: 201 GDPEQRYREDPVRMLRAVRLAAKLGFQIDAGTAEPIPRLAGLLAEAAPARLFEEVLKLFL 260
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYL--VKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
G AS L + GLL L P A L + G RR +L+ N D +A D
Sbjct: 261 SGHGVASFEGLERHGLLAALFPESTAALHSNRSGALRR-----MLIDGLRNTDTRVANDE 315
Query: 239 PCHSSLWIAIL---AFHKAL 255
P + A+L A+ +AL
Sbjct: 316 PVSPAFLFALLLWPAYCRAL 335
>gi|253999870|ref|YP_003051933.1| poly(A) polymerase [Methylovorus glucosetrophus SIP3-4]
gi|253986549|gb|ACT51406.1| poly(A) polymerase [Methylovorus glucosetrophus SIP3-4]
Length = 455
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 15/309 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A ++V RVF + I+G+RF + HV F + VEVS+F S
Sbjct: 74 LLKKRPKDFDVATNATPEQVNRVFRRSRIIGRRFRLVHVLFGDETVEVSTFRGSHLNDDG 133
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D K I D + + L+RDFT N L +DP ++ + D+ G EDI+ ++ +
Sbjct: 134 DAKIADSGRILRDNVFGSQEDDALRRDFTANALYYDPSSEDVLDFHHGYEDIQAGILRMI 193
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
T ++ED R+LRAIR++A+LG + + T + L+ + ++ RL EM +
Sbjct: 194 GDPVTRYREDPVRMLRAIRLSAKLGLKLDKATEAPIPKLADELQEVPASRLFDEMLKLFL 253
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G A S++ L + GL LLP+ L + R + N D+ + D+P
Sbjct: 254 SGHAMESVKALRQHGLHHGLLPLLDVVLEQPMGER------FVTLALKNTDERVLQDKPV 307
Query: 241 HSSLWIAILAFHKALSD----QPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESF 296
S A L +H+ L+ Q + LA++ D ++A K+A I+K + +
Sbjct: 308 SPSFLFATLLWHEVLTAWQQYQDNGERPIPALHLAMHEVCD-IQAEKLA--IHKRYSTTM 364
Query: 297 CEL--LEPR 303
E+ ++PR
Sbjct: 365 KEIWGMQPR 373
>gi|89074127|ref|ZP_01160626.1| putative polyA polymerase [Photobacterium sp. SKA34]
gi|89050063|gb|EAR55589.1| putative polyA polymerase [Photobacterium sp. SKA34]
Length = 447
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 24/269 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 45 LLDKQPKDFDIATNATPEDIKKLFRNCRLIGRRFRLAHILFGRDIIEVATF----RGHHS 100
Query: 61 DFKYEFERPIGCDEKDFIRWR-----------------NCLQRDFTINGLMFDPYAKIIY 103
D + P +K I R + +RDFTIN L + +
Sbjct: 101 DAPVQTTTPKDSKQKPQISSRSQEGMLLRDNVYGTIEEDAERRDFTINALYYSVKDFTVT 160
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+ V+ + T ++ED R+LRA+R A +L TA +K L+P +
Sbjct: 161 DYANGVHDLNNRIVRLMGDPETRYREDPVRMLRAVRFAVKLDMEIDPATAAPIKDLAPLM 220
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
L + RL E +L G + R+L ++ L + L PI A + + + +K ++
Sbjct: 221 LDIPSARLFEESLKLLQSGQGLETYRMLREYNLFQQLFPILADHFTEDNSSQTEK---MI 277
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
+ ++ DK +A D+ + + A + ++
Sbjct: 278 EHILASTDKRIAEDKRVNPAFIYAAMLWY 306
>gi|262172326|ref|ZP_06040004.1| poly(A) polymerase [Vibrio mimicus MB-451]
gi|261893402|gb|EEY39388.1| poly(A) polymerase [Vibrio mimicus MB-451]
Length = 457
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 111/212 (52%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA +++L+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAEPIEYLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|290476646|ref|YP_003469551.1| poly(A) polymerase I [Xenorhabdus bovienii SS-2004]
gi|289175984|emb|CBJ82787.1| poly(A) polymerase I [Xenorhabdus bovienii SS-2004]
Length = 503
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 30/290 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A ++V ++F C +VG+RF + H+ F ++EV++F S +
Sbjct: 110 LLHKKPKDFDIATNATPEQVRKLFRNCRLVGRRFRLAHIMFGPDVIEVATFRGSHEQVES 169
Query: 61 DFKYEFERP----------IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+ + + ++ G E+D +R RDFTIN L + + DY+GG+
Sbjct: 170 NDRNQSQKAQSGMLLRDNIFGSVEEDAVR------RDFTINSLYYGIEDFALRDYVGGMA 223
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D++ ++ + T ++ED R+LRA+R A++L + TA + L+ + + R
Sbjct: 224 DLQAGIIRLIGDPETRYREDPVRMLRAVRFASKLDMTIEKTTAEPIPQLAFLLKDIPSAR 283
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKR--SNLLLSLFS 228
L E +L G ++ +LL ++ L ++L P +++ GF LL +
Sbjct: 284 LFEESLKLLQSGHGYSTYKLLREYNLFQLLFP-----MMQRGFTPNSDSPLEKLLEQVLK 338
Query: 229 NLDKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAV 272
N D L D+ + + LW ++ + LS + P A F+LA+
Sbjct: 339 NTDYRLQNDKRVNPAFLFAAMLWYPLIEHAEKLSQEGGLPYYDA-FALAM 387
>gi|319941727|ref|ZP_08016049.1| Poly(A) polymerase [Sutterella wadsworthensis 3_1_45B]
gi|319804660|gb|EFW01527.1| Poly(A) polymerase [Sutterella wadsworthensis 3_1_45B]
Length = 484
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 23/212 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A +EV R + I+G+RF + HV F I+E S+F
Sbjct: 69 LLGVAPKDFDVATDATPEEVKRAQKRAIIIGRRFRLVHVIFGQEIIECSTFRALEGAGVR 128
Query: 52 -STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+SGR S + E W + +RDFTIN L +DP + IYDY G E
Sbjct: 129 KDSSGRVISDNVFGEM-------------WEDAARRDFTINALYYDPATEEIYDYHHGFE 175
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+ K +++ + ++ED R++RA+RI+A+LGF T + ++ + + R
Sbjct: 176 DLGKKRLRMIGNPEERYREDPVRMIRAVRISAKLGFAIEPATERPIARMAKLLSNVPSAR 235
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
L+ E +L G A + L K GL E +LP
Sbjct: 236 LVDEALKLLTCGHAVECVSRLRKEGLAEAVLP 267
>gi|395236472|ref|ZP_10414667.1| poly(A) polymerase I [Enterobacter sp. Ag1]
gi|394728899|gb|EJF28934.1| poly(A) polymerase I [Enterobacter sp. Ag1]
Length = 448
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 114/222 (51%), Gaps = 16/222 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------ST 53
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 55 LLGKKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEEQQS 114
Query: 54 SGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+ R+ S+ + + G E+D R RDFTIN L + + DY+GG+
Sbjct: 115 ADRQTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFSVRDYVGGLN 168
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+ K ++ + T ++ED R+LRA+R AA+L S ET + L+ + + R
Sbjct: 169 DLNKGIIRLIGDPETRYREDPVRMLRAVRFAAKLNMTISPETGEPIPRLATLLNDVPPAR 228
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
L E +L G + +LL ++ L + L PI Y + G
Sbjct: 229 LFEESLKLLQAGYGFETYQLLREYQLFQPLFPIITRYFTEQG 270
>gi|420369639|ref|ZP_14870331.1| poly(A) polymerase [Shigella flexneri 1235-66]
gi|391321089|gb|EIQ77845.1| poly(A) polymerase [Shigella flexneri 1235-66]
Length = 436
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 147/314 (46%), Gaps = 29/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 159 LEDGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + + L ++ L + L P Y + G ++ ++ + N D
Sbjct: 219 FEEALKLLQAGYGYETYKKLREYSLFQPLFPTITRYFTEDGDSPMER---IIAQVLKNTD 275
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
+ D + + A + ++ PL+ +A +G +A +A +N
Sbjct: 276 NRINNDMRVNPAFLFAAMFWY---------PLLETAQKIAQESGLAYYDAFALA--MNDV 324
Query: 292 HDESFCELLEPRDL 305
DE+ L P+ L
Sbjct: 325 LDEACRSLAIPKRL 338
>gi|375259040|ref|YP_005018210.1| poly(A) polymerase I [Klebsiella oxytoca KCTC 1686]
gi|365908518|gb|AEX03971.1| poly(A) polymerase I [Klebsiella oxytoca KCTC 1686]
Length = 437
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 127/258 (49%), Gaps = 6/258 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 45 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 104
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 105 DRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVI 164
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL E+
Sbjct: 165 RLIGDPETRYREDPVRMLRAVRFAAKLSMSISEETAEPIPRLATLLHDVPPARLFEEVLK 224
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + LL ++ L + L P Y + G ++ ++ + N D + D
Sbjct: 225 LLQAGDGYQTYLLLREYNLFQPLFPTITRYFTERGDSPMER---IISQVLKNTDNRIRND 281
Query: 238 RPCHSSLWIAILAFHKAL 255
+ + A++ ++ L
Sbjct: 282 MRVNPAFLFAVMFWYPLL 299
>gi|90023016|ref|YP_528843.1| poly(A) polymerase [Saccharophagus degradans 2-40]
gi|89952616|gb|ABD82631.1| poly(A) polymerase [Saccharophagus degradans 2-40]
Length = 443
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 116/223 (52%), Gaps = 11/223 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--STSGRRF 58
+L+ PKDFD+ TSA ++V +VF I+GKRF I HV F I+EV++F S + R
Sbjct: 60 LLDADPKDFDVATSATPEQVRKVFRNARIIGKRFRIVHVRFGREIIEVTTFRGSHTDARS 119
Query: 59 SRDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
SRD + G +D + + ++RDFTIN L ++P + D+ GG++D++
Sbjct: 120 SRDAS---QSDTGVLLRDNVYGDIKSDAMRRDFTINALYYNPINGEVLDFCGGLKDLKNR 176
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + ++ED R+LRA R A +LGF T ++ + + + RL E+
Sbjct: 177 TIRIIGDPEERYKEDPVRLLRAARFAGKLGFNIDPVTEKPIREHADYLAHIPSARLFEEV 236
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG--FRRR 216
+ G A A+L L + L + L P + + HG F RR
Sbjct: 237 LKLFMSGQATATLNKLRDYDLFKYLFPA-TNHCLDHGTDFDRR 278
>gi|118580041|ref|YP_901291.1| poly(A) polymerase [Pelobacter propionicus DSM 2379]
gi|118502751|gb|ABK99233.1| poly(A) polymerase [Pelobacter propionicus DSM 2379]
Length = 455
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 14/226 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L R PKDFD++T+A +V R+F C +VG+RF + H+HF++ I+EV++F +
Sbjct: 52 LLGREPKDFDVVTNATPNQVKRIFRNCRLVGRRFRLAHIHFQDEIIEVATFRSPASDEPD 111
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYI 106
+ + + R + D+ +R + L+RDFT+N L ++ I D+
Sbjct: 112 PAPKKPDETEQRHPRMLKDDDGMILRDNVYGTPEEDALRRDFTVNSLAYNIADFSIIDFT 171
Query: 107 GGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKL 166
GG+ D+ ++T+ + FQED R+LRA+R AA+LGF +T + + +I++
Sbjct: 172 GGLADLSAGIIRTIGDPAVRFQEDPVRMLRAVRFAAQLGFTIEEQTRKALVAATDTIVRS 231
Query: 167 DRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
RL E+ + G L + GL L P + +L G
Sbjct: 232 APPRLYEEVLKLFLSGEGAKCYDHLSRTGLFAALFPDFSNWLGVEG 277
>gi|197263544|ref|ZP_03163618.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|205357523|ref|ZP_02571164.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|383495007|ref|YP_005395696.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
gi|197241799|gb|EDY24419.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|205331471|gb|EDZ18235.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|380461828|gb|AFD57231.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 798]
Length = 454
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL
Sbjct: 176 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMHISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 236 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 276
>gi|423127444|ref|ZP_17115123.1| Poly(A) polymerase [Klebsiella oxytoca 10-5250]
gi|376394483|gb|EHT07133.1| Poly(A) polymerase [Klebsiella oxytoca 10-5250]
Length = 454
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 6/258 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 62 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ V
Sbjct: 122 DRITSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVV 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL E+
Sbjct: 182 RLIGDPETRYREDPVRMLRAVRFAAKLSMSISEETAEPIPRLATLLHDVPPARLFEEVLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + LL ++ L + L P Y + G ++ ++ + N D + D
Sbjct: 242 LLQAGDGYETYILLREYNLFQPLFPTITRYFTERGDSPMER---IISQVLKNTDTRIRND 298
Query: 238 RPCHSSLWIAILAFHKAL 255
+ + A++ ++ L
Sbjct: 299 MRVNPAFLFAVMFWYPLL 316
>gi|115311614|sp|Q8ZRQ8.2|PCNB_SALTY RecName: Full=Poly(A) polymerase; Short=PAP; AltName: Full=Plasmid
copy number protein; Flags: Precursor
Length = 465
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 73 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 132
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 133 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 186
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL
Sbjct: 187 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMHISPETAEPIPRLATLLNDIPPARL 246
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 247 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 287
>gi|352104788|ref|ZP_08960541.1| poly(A) polymerase [Halomonas sp. HAL1]
gi|350598710|gb|EHA14820.1| poly(A) polymerase [Halomonas sp. HAL1]
Length = 460
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 139/302 (46%), Gaps = 24/302 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L ++PKDFD+ T+A ++V +F ++G+RF I HV F ++EV++F +
Sbjct: 76 LLGKMPKDFDVATNATPEQVRDLFRNSRLIGRRFRIVHVRFGREVIEVTTFRGKPQDEHG 135
Query: 61 DFKYEFERPIGCDEKDFIR---WRN----CLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D DE +R W N L+RDFT+N L ++ I D+ G EDI+
Sbjct: 136 DHIAH-----QSDEGLLLRDNVWGNIEEDALRRDFTVNALYYNIADFSITDFANGAEDIK 190
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + +T ++ED R+LRA+R AA+L F T + +P +L++ RL
Sbjct: 191 TRTLRLIGDPATRYREDPVRMLRAVRFAAKLDFTLDPATEEPMYDQAPLLLQIPPARLFD 250
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G + RLL +GL +L P + L+ +N DK
Sbjct: 251 EVLKLFMSGHGLVTFRLLSHYGLFGMLFPEAEEAMADA-----AWAEELIEQALTNTDKR 305
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARR 287
+A +RP + LW + +AL +Q P + A+ + A LE I +R
Sbjct: 306 IAEERPVTPAFLLAAFLWAPVKQRQEAL-EQEGMPPIPALQAAAQQVVSRQLEFTSIPKR 364
Query: 288 IN 289
Sbjct: 365 FG 366
>gi|323491995|ref|ZP_08097160.1| poly(A) polymerase [Vibrio brasiliensis LMG 20546]
gi|323313724|gb|EGA66823.1| poly(A) polymerase [Vibrio brasiliensis LMG 20546]
Length = 455
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 143/297 (48%), Gaps = 16/297 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F + S+
Sbjct: 65 LLSQQPKDFDIATNATPEQIRQLFKNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSK 124
Query: 61 DFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ + + + G ++D R RDFT+N + ++ I+DY GGIED+
Sbjct: 125 NVSQQSKEGMLLRDNVYGTIDEDAER------RDFTVNAMYYNIGDYSIHDYAGGIEDLE 178
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LRAIR A +L F +TA ++ L+ + ++ RL
Sbjct: 179 DKLIRLIGDPDTRYREDPVRMLRAIRFAVKLDFDIEEDTAAPIEELATLLQEIPAARLYE 238
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL--- 230
E ML G + L+ ++ L + L P A + + ++ +L+L
Sbjct: 239 ESLKMLQSGHGLETYHLMREYNLFQQLFPTIAEFFTEDYSSPTEQMLDLVLDSTDQRIEE 298
Query: 231 DKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARR 287
K + P + LW + K L ++ + A+ + Y D + + I RR
Sbjct: 299 GKRINPAFMFAAMLWYPLQEKAKQLMEKRKLSFYDAIMEASNYVLDDQVRTIAIPRR 355
>gi|359787321|ref|ZP_09290379.1| poly(A) polymerase [Halomonas sp. GFAJ-1]
gi|359295450|gb|EHK59719.1| poly(A) polymerase [Halomonas sp. GFAJ-1]
Length = 446
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 11/251 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L ++PKDFD+ T+A ++V +F ++G+RF I HV F ++EV++F +
Sbjct: 61 LLGKMPKDFDVATNATPEQVRDLFRNSRMIGRRFRIVHVRFGREVIEVTTFRGKPQDEHG 120
Query: 61 DFKYEFERPIGCDEKDFIRWRN----CLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
D + + G +D + W N L+RDFT+N L ++ I+D+ G +DI+
Sbjct: 121 DHIAQ-QSDAGLLLRDNV-WGNIEEDALRRDFTVNALYYNIADFTIHDFANGAQDIKSRT 178
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + +T ++ED R+LRA+R AA+L F T + L+P +L++ RL E+
Sbjct: 179 LRLIGDPATRYREDPVRMLRAVRFAAKLDFTIDPATEEPMFDLAPLLLQIPPARLFDEVL 238
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+ G + RLL + L +L P + L+ +N DK +A
Sbjct: 239 KLFMSGHGLVTFRLLSHYNLFGMLFPEAEEAMADA-----AWAEELIEQALTNTDKRIAE 293
Query: 237 DRPCHSSLWIA 247
DRP + +A
Sbjct: 294 DRPVTPAFLLA 304
>gi|421728233|ref|ZP_16167388.1| poly(A) polymerase I [Klebsiella oxytoca M5al]
gi|410370914|gb|EKP25640.1| poly(A) polymerase I [Klebsiella oxytoca M5al]
Length = 437
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 145/306 (47%), Gaps = 17/306 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 45 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 104
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ V
Sbjct: 105 DRITSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVV 164
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL E+
Sbjct: 165 RLIGDPETRYREDPVRMLRAVRFAAKLSMSISEETAEPIPRLATLLHDVPPARLFEEVLK 224
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + LL ++ L + L P Y + G ++ ++ + N D + D
Sbjct: 225 LLQAGDGYETYILLREYNLFQPLFPTITRYFTERGDSPMER---IISQVLKNTDTRIRND 281
Query: 238 RPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFC 297
+ + A++ ++ PL+ +A +G +A +A +N DE+
Sbjct: 282 MRVNPAFLFAVMFWY---------PLLETAQKIAQESGLAYYDAFALA--MNDVLDEACR 330
Query: 298 ELLEPR 303
L P+
Sbjct: 331 TLAIPK 336
>gi|153803792|ref|ZP_01958378.1| polyA polymerase [Vibrio cholerae MZO-3]
gi|124120672|gb|EAY39415.1| polyA polymerase [Vibrio cholerae MZO-3]
Length = 351
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 117/227 (51%), Gaps = 3/227 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL 224
ML G + L+ ++ L + L P A + + ++ +L+L
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFTSDHSSKTEQMLDLVL 289
>gi|418523246|ref|ZP_13089267.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410700121|gb|EKQ58693.1| polynucleotide adenylyltransferase [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 455
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 137/298 (45%), Gaps = 27/298 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A +EV +F C ++G+RF + HV F I+EV++F + S D + +
Sbjct: 72 PKDFDVATDATPEEVKALFRNCRLIGRRFRLAHVVFGREIIEVATFRANVDDGSGDRELD 131
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D IR RD T N L + + DY GG ED++ ++ +
Sbjct: 132 NGRLVRDNVYGTIEDDAIR------RDCTCNALYYAIEDFSVRDYCGGFEDVQARLMKLI 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 186 GDPQLRYQEDPVRMLRAVRLAAKLNFDIEAGTAEPIPRLAGLLSEAAPARLFEEILKLFL 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G AS L ++GLL L P AA L + R ++L N D +A D P
Sbjct: 246 SGHGVASFEGLERYGLLGALFPESAAALKSN---RSGALRAMVLEGLRNTDARVANDEPV 302
Query: 241 HSSLWIAIL---AFHKALSD------QPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
+ A+L AF + L QP D A + ++ LE V + RR +
Sbjct: 303 SPAFLFALLLWPAFCRTLMGLQAQGVQPEDAQRRAADRVTLHQ----LERVALPRRFS 356
>gi|16763574|ref|NP_459189.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|378443637|ref|YP_005231269.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378448490|ref|YP_005235849.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|378698163|ref|YP_005180120.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|378987589|ref|YP_005250753.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|379699405|ref|YP_005241133.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|419731648|ref|ZP_14258558.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|419736047|ref|ZP_14262909.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|419738165|ref|ZP_14264932.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|419743698|ref|ZP_14270362.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|419747003|ref|ZP_14273567.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|421571359|ref|ZP_16017037.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|421575733|ref|ZP_16021342.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|421578347|ref|ZP_16023925.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|421583672|ref|ZP_16029188.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|422024305|ref|ZP_16370796.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|422029322|ref|ZP_16375592.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|427544768|ref|ZP_18926100.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|427560634|ref|ZP_18930864.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|427579961|ref|ZP_18935651.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|427601523|ref|ZP_18940466.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|427626154|ref|ZP_18945373.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|427649237|ref|ZP_18950130.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|427659521|ref|ZP_18955081.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|427664635|ref|ZP_18959828.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|427690923|ref|ZP_18964702.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
gi|448967573|ref|YP_002044169.2| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|16418686|gb|AAL19148.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|261245416|emb|CBG23206.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267991868|gb|ACY86753.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301156811|emb|CBW16287.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|323128504|gb|ADX15934.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. ST4/74]
gi|332987136|gb|AEF06119.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
gi|381291206|gb|EIC32456.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41579]
gi|381292793|gb|EIC33967.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41563]
gi|381303647|gb|EIC44674.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41573]
gi|381311535|gb|EIC52350.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41566]
gi|381320519|gb|EIC61121.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. 41565]
gi|402520780|gb|EJW28120.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00322]
gi|402520912|gb|EJW28251.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00325]
gi|402524498|gb|EJW31796.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00326]
gi|402531573|gb|EJW38778.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Heidelberg str. CFSAN00328]
gi|414024197|gb|EKT07591.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm1]
gi|414024375|gb|EKT07754.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm8]
gi|414026174|gb|EKT09453.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm2]
gi|414038174|gb|EKT20895.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm9]
gi|414039066|gb|EKT21758.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm3]
gi|414043455|gb|EKT25960.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm4]
gi|414052617|gb|EKT34651.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm10]
gi|414053980|gb|EKT35944.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm6]
gi|414058286|gb|EKT39968.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm11]
gi|414062220|gb|EKT43558.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm12]
gi|414067754|gb|EKT48038.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. STm5]
Length = 472
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL
Sbjct: 194 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMHISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 254 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 294
>gi|381153519|ref|ZP_09865388.1| poly(A) polymerase [Methylomicrobium album BG8]
gi|380885491|gb|EIC31368.1| poly(A) polymerase [Methylomicrobium album BG8]
Length = 458
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 121/249 (48%), Gaps = 31/249 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L R PKDFD++T+A +++ VF C ++G+RF + HVHF N ++EV++F G
Sbjct: 70 LLGREPKDFDVVTNAHPEQIKGVFRNCRLIGRRFRLAHVHFGNEVIEVATFRGFGNEQDD 129
Query: 57 --------RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
R RD Y G E+D WR RDFT+N L ++ + DY GG
Sbjct: 130 NQVTNDEGRLLRDNVY------GTIEQDV--WR----RDFTVNALYYNIKDFSVVDYTGG 177
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
++D + ++ + F+ED R+LRA+R A +LGF + + + + +
Sbjct: 178 MDDHKSGMLRLIGDPEIRFREDPVRMLRAVRFAVKLGFNIDPDCRKAIYGSADLLYSIPS 237
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV--KHGFRRRDKRSNLLLSL 226
RL E+ + G A + +L +GL +VL P L ++GF + LL+
Sbjct: 238 ARLYDEVLKLFLSGFALQTFEMLRHYGLFQVLFPDTEKSLAVEENGFPKL-----LLIKA 292
Query: 227 FSNLDKLLA 235
N D +A
Sbjct: 293 LQNSDNRIA 301
>gi|350544805|ref|ZP_08914350.1| Poly(A) polymerase [Candidatus Burkholderia kirkii UZHbot1]
gi|350527405|emb|CCD38165.1| Poly(A) polymerase [Candidatus Burkholderia kirkii UZHbot1]
Length = 525
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 126/271 (46%), Gaps = 27/271 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A +V ++F + I+G+RF I HV F I+E S+F
Sbjct: 98 LLGVAPKDFDVATDATPDQVQKLFRRARIIGRRFQIVHVQFGQEIIETSTFRALMDAPPE 157
Query: 52 --STSGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPYAKII 102
S RR R D + G +D + W + +RDFTIN + +DP + +
Sbjct: 158 PVSEPPRRLKRGELDNRTHAVDASGRVLRDNV-WGKQHEDATRRDFTINAMYYDPATQTV 216
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
DY G+ DIR ++ + +T ++ED R+LR +R AA+LGF T +K L+
Sbjct: 217 LDYHDGMADIRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIDEATRAPIKDLADL 276
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK-HGFRRRDKRSN 221
+ + RL EM +L G A A L L + GL +LP+ L + HG
Sbjct: 277 MNNVPAARLFDEMLKLLLSGHALACLTRLRQEGLHHGVLPLLDVVLEQPHG-------EK 329
Query: 222 LLLSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
+ ++ D+ + +P A L +H
Sbjct: 330 FVTLALTSTDERVRAGKPVSPGFLFATLLWH 360
>gi|90580267|ref|ZP_01236074.1| putative polyA polymerase [Photobacterium angustum S14]
gi|90438569|gb|EAS63753.1| putative polyA polymerase [Vibrio angustum S14]
Length = 447
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 24/269 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 45 LLDKQPKDFDIATNATPEDIKKLFRNCRLIGRRFRLAHILFGRDIIEVATF----RGHHS 100
Query: 61 DFKYEFERPIGCDEKDFIRWR-----------------NCLQRDFTINGLMFDPYAKIIY 103
D + P +K I R + +RDFTIN L + +
Sbjct: 101 DAPIQATAPKDSKQKPQISSRSQEGMLLRDNVYGTIEEDAERRDFTINALYYSVKDFTVT 160
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+ V+ + T ++ED R+LRA+R A +L TA +K L+P +
Sbjct: 161 DYANGVHDLNNRIVRLMGDPETRYREDPVRMLRAVRFAVKLDMEIDPATAAPIKDLAPLM 220
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
L + RL E +L G + R+L ++ L + L PI A + + + +K ++
Sbjct: 221 LDIPSARLFEESLKLLQSGQGLETYRMLREYNLFQQLFPILADHFTEDNSSQTEK---MI 277
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
+ ++ DK +A D+ + + A + ++
Sbjct: 278 EHILASTDKRIAEDKRVNPAFIYAAMLWY 306
>gi|421263601|ref|ZP_15714632.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
P52VAC]
gi|401689287|gb|EJS84750.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
P52VAC]
Length = 501
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGR--- 56
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F ++EV++F S
Sbjct: 108 LLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHNENN 167
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ S++ + G E+D R RDFT+N L ++P + DY GIED
Sbjct: 168 HESLAKQSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNTLRDYFHGIED 221
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + +QED R+LR++R A+L + + ++ L+P + + RL
Sbjct: 222 LKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 281
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++GL E L P Y + G
Sbjct: 282 FDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEKG 322
>gi|205359247|ref|ZP_02668314.2| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|374982283|ref|ZP_09723604.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|378982726|ref|YP_005245881.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|386590077|ref|YP_006086477.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
gi|194405879|gb|ACF66098.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|205337551|gb|EDZ24315.1| poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|312911154|dbj|BAJ35128.1| poly(A) polymerase I [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321222237|gb|EFX47309.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Typhimurium str. TN061786]
gi|383797121|gb|AFH44203.1| Poly(A) polymerase [Salmonella enterica subsp. enterica serovar
Heidelberg str. B182]
Length = 437
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 115/221 (52%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 104
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 105 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 158
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL
Sbjct: 159 LQEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMHISPETAEPIPRLATLLNDIPPARL 218
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G+ + + L ++ L + L P Y ++G
Sbjct: 219 FEESLKLLQAGNGYETYQQLREYHLFQPLFPTITRYFTENG 259
>gi|386833983|ref|YP_006239298.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
3480]
gi|385200684|gb|AFI45539.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
3480]
Length = 452
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGR--- 56
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F ++EV++F S
Sbjct: 59 LLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHNENN 118
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ S++ + G E+D R RDFT+N L ++P + DY GIED
Sbjct: 119 HESLAKQSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNTLRDYFHGIED 172
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + +QED R+LR++R A+L + + ++ L+P + + RL
Sbjct: 173 LKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 232
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++GL E L P Y + G
Sbjct: 233 FDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEKG 273
>gi|383310546|ref|YP_005363356.1| polyA polymerase [Pasteurella multocida subsp. multocida str. HN06]
gi|380871818|gb|AFF24185.1| polyA polymerase [Pasteurella multocida subsp. multocida str. HN06]
Length = 424
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGR--- 56
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F ++EV++F S
Sbjct: 31 LLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHNENN 90
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ S++ + G E+D R RDFT+N L ++P + DY GIED
Sbjct: 91 HESLAKQSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNTLRDYFHGIED 144
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + +QED R+LR++R A+L + + ++ L+P + + RL
Sbjct: 145 LKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 204
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++GL E L P Y + G
Sbjct: 205 FDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEKG 245
>gi|241664040|ref|YP_002982400.1| poly(A) polymerase [Ralstonia pickettii 12D]
gi|240866067|gb|ACS63728.1| poly(A) polymerase [Ralstonia pickettii 12D]
Length = 520
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 148/330 (44%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A +V +F + I+G+RF I HV F + I+EVS+F
Sbjct: 98 LLGIKPKDFDVATNATPDQVQALFRRSRIIGRRFQIVHVTFYGGRDQEIIEVSTFRALVD 157
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 158 AVDAEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 216
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LR +R AA+ GF +T +
Sbjct: 217 DETVHDYHHGMEDMRARTLRMIGDPLTRYREDPVRMLRVVRFAAKTGFDIDPDTRAPIAE 276
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + +R
Sbjct: 277 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGQR--- 333
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D + +P A L +H + R +PL+ A+ +
Sbjct: 334 ---FVQLALDNTDDRVKAGKPVSPGFLFASLLWHHVVEHWNRRRAAGEPLIPALHTAMDE 390
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 391 VLDRQTEQLAIQRRFTSDMKEIWS--MQPR 418
>gi|15602729|ref|NP_245801.1| hypothetical protein PM0864 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721175|gb|AAK02948.1| PcnB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 501
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGR--- 56
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F ++EV++F S
Sbjct: 108 LLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHNENN 167
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ S++ + G E+D R RDFT+N L ++P + DY GIED
Sbjct: 168 HESLAKQSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNTLRDYFHGIED 221
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + +QED R+LR++R A+L + + ++ L+P + + RL
Sbjct: 222 LKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 281
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++GL E L P Y + G
Sbjct: 282 FDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEKG 322
>gi|417853506|ref|ZP_12498872.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
Anand1_goat]
gi|338219366|gb|EGP05039.1| poly(A) polymerase [Pasteurella multocida subsp. multocida str.
Anand1_goat]
Length = 501
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGR--- 56
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F ++EV++F S
Sbjct: 108 LLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHNENN 167
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ S++ + G E+D R RDFT+N L ++P + DY GIED
Sbjct: 168 HESLAKQSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNTLRDYFHGIED 221
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + +QED R+LR++R A+L + + ++ L+P + + RL
Sbjct: 222 LKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 281
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++GL E L P Y + G
Sbjct: 282 FDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEKG 322
>gi|92115178|ref|YP_575106.1| poly(A) polymerase [Chromohalobacter salexigens DSM 3043]
gi|91798268|gb|ABE60407.1| poly(A) polymerase [Chromohalobacter salexigens DSM 3043]
Length = 473
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 14/255 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS- 59
+L ++PKDFDI T A +E+ +F I+G+RF I HV F I+EV++F GR
Sbjct: 77 LLGKVPKDFDIATDATPEEIRTLFRNSRIIGRRFRIVHVRFGREIIEVTTFR--GRPGDD 134
Query: 60 RDFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D + G +D + W + L+RDFT+N L ++ I+D+ G+ DI +
Sbjct: 135 HDDTLSQQSDDGLLLRDNV-WGTIEEDALRRDFTVNALYYNIADFSIHDWANGVSDIDER 193
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + ++ED R+LRA+R AA+L F T + L+P +L++ RL E+
Sbjct: 194 TLRLIGDPEVRYREDPVRMLRAVRFAAKLDFDIEPRTEAPIGELAPLLLQIPPARLFEEV 253
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G A + LL ++GL +L P L ++ D L+ N D+ +
Sbjct: 254 LKLFLSGHALRTFELLREYGLFAMLFPETDETLAEY-----DWAQPLIEQALINTDRRIQ 308
Query: 236 PDRPCHSS-LWIAIL 249
DRP + L+ A+L
Sbjct: 309 EDRPVTPAFLYGAML 323
>gi|425065728|ref|ZP_18468848.1| Poly(A) polymerase [Pasteurella multocida subsp. gallicida P1059]
gi|404384104|gb|EJZ80549.1| Poly(A) polymerase [Pasteurella multocida subsp. gallicida P1059]
Length = 501
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGR--- 56
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F ++EV++F S
Sbjct: 108 LLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHNENN 167
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ S++ + G E+D R RDFT+N L ++P + DY GIED
Sbjct: 168 HESLAKQSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNTLRDYFHGIED 221
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + +QED R+LR++R A+L + + ++ L+P + + RL
Sbjct: 222 LKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 281
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++GL E L P Y + G
Sbjct: 282 FDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEKG 322
>gi|425063553|ref|ZP_18466678.1| Poly(A) polymerase [Pasteurella multocida subsp. gallicida X73]
gi|404382668|gb|EJZ79126.1| Poly(A) polymerase [Pasteurella multocida subsp. gallicida X73]
Length = 501
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGR--- 56
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F ++EV++F S
Sbjct: 108 LLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHNENN 167
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ S++ + G E+D R RDFT+N L ++P + DY GIED
Sbjct: 168 HESLAKQSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNTLRDYFHGIED 221
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + +QED R+LR++R A+L + + ++ L+P + + RL
Sbjct: 222 LKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 281
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++GL E L P Y + G
Sbjct: 282 FDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEKG 322
>gi|89095126|ref|ZP_01168052.1| poly(A) polymerase [Neptuniibacter caesariensis]
gi|89080621|gb|EAR59867.1| poly(A) polymerase [Oceanospirillum sp. MED92]
Length = 467
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/300 (27%), Positives = 140/300 (46%), Gaps = 17/300 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T A +E +F + ++G+RF + HV F ++EV++F S S+
Sbjct: 77 LLKKRPKDFDVATDAHPEEAAELFRRARLIGRRFKLVHVRFGRDLIEVATFRAS--HDSQ 134
Query: 61 DFKYEFERPIGCDEKDFIRWR-------NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ E E+ CD +R + L+RDFT+N L + P +YD+ G ED++
Sbjct: 135 SEEGEGEQGKQCDSGLILRDNVYGTIEDDALRRDFTVNALYYCPKDHCVYDFANGYEDLQ 194
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
K ++ + ++ED R+LRA R AA+L F ++ + L+P + ++ RL
Sbjct: 195 KGILRMIGDPEARYKEDPVRMLRAARFAAKLDFTIDPQSELPIIPLAPMLKRIAPARLFD 254
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G A S L + L E L P+ L + NL+ + N D+
Sbjct: 255 EVLKLFQSGHAVQSYEQLRRLELFEPLFPLVHRTLQQEQLDV--PLENLINNALKNTDRR 312
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARR 287
LA + + LW + L + + P + A+ A G+ +++ I RR
Sbjct: 313 LAQRKSVTPAFLFAAILWYPTQIRMQQLMKEKKMPPLPAMHEAANEILGEQVKSTAIPRR 372
>gi|322515233|ref|ZP_08068231.1| polyA polymerase family protein [Actinobacillus ureae ATCC 25976]
gi|322118738|gb|EFX90944.1| polyA polymerase family protein [Actinobacillus ureae ATCC 25976]
Length = 510
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 111/215 (51%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L PKDFD+ T+A+ +E+ ++F QC ++G+RF + H+ F I EV++F S
Sbjct: 112 LLGHKPKDFDVATNAKPEEIQKIFGHQCRLIGRRFRLAHIVFGRDIYEVATFRADHSNHS 171
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + +RDFT+N L +DP +I+D+ GI D++ K+
Sbjct: 172 SDKISKVSEEGMLLRDNVYGTLREDAQRRDFTVNSLYYDPKHNLIFDFFDGIADLKAGKL 231
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LRA+R A+L + + ++ L+ + + RL E
Sbjct: 232 RLIGDPVIRYQEDPVRMLRAVRFMAKLDMFLDKPSDAPIRELAHLLKNIPAARLFDESLK 291
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + +L+ ++GL E L P+ + +H
Sbjct: 292 LLQSGQGFKTYQLMRQYGLFEQLFPVLVPFFTEHN 326
>gi|299065813|emb|CBJ36991.1| poly(A) polymerase I [Ralstonia solanacearum CMR15]
Length = 515
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 148/330 (44%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A ++V +F + I+G+RF I HV F E I+EVS+F
Sbjct: 95 LLGIKPKDFDVATNATPEQVEALFRRSRIIGRRFQIVHVTFYGGREQEIIEVSTFRALVD 154
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 155 AVESEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 213
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LRA+R AA+ GF T +
Sbjct: 214 DQTVHDYHHGMEDMRARLLRMIGDPHTRYREDPVRMLRAVRFAAKTGFDIDPATRAPIAE 273
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L I + RL EM +L G A ASL+ L K GL LLP+ L + +R
Sbjct: 274 LGALIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGQR--- 330
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D+ + +P A L +H L R +PL+ A+
Sbjct: 331 ---FVQLALDNTDERVKAGKPVSPGFLFASLMWHHVLEHWNRRRAAGEPLIPALHEAMDE 387
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 388 VLDRQTEQLAIQRRFTADMKEIWS--MQPR 415
>gi|309781368|ref|ZP_07676104.1| poly(A) polymerase [Ralstonia sp. 5_7_47FAA]
gi|404396970|ref|ZP_10988764.1| poly(A) polymerase [Ralstonia sp. 5_2_56FAA]
gi|308919781|gb|EFP65442.1| poly(A) polymerase [Ralstonia sp. 5_7_47FAA]
gi|348617056|gb|EGY66537.1| poly(A) polymerase [Ralstonia sp. 5_2_56FAA]
Length = 521
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 148/330 (44%), Gaps = 36/330 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFST--- 53
+L PKDFD+ T+A +V +F + I+G+RF I HV F + I+EVS+F
Sbjct: 99 LLGIKPKDFDVATNATPDQVQALFRRSRIIGRRFQIVHVTFYGGRDQEIIEVSTFRALVD 158
Query: 54 --------SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+G+R R D G +D + W + +RDFT+N + ++P
Sbjct: 159 AVDAEQVPAGKRVKRTELDHHTHAVDASGRVLRDNV-WGTQAEDATRRDFTVNAMYYNPA 217
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ ++DY G+ED+R ++ + T ++ED R+LR +R AA+ GF +T +
Sbjct: 218 DETVHDYHHGMEDMRARTLRMIGDPLTRYREDPVRMLRVVRFAAKTGFDIDPDTRAPIAE 277
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDK 218
L P I + RL EM +L G A ASL+ L K GL LLP+ L + +R
Sbjct: 278 LGPLIHNVPAARLFDEMLKLLMSGHAWASLQELRKAGLHRGLLPLLDVALEQPMGQR--- 334
Query: 219 RSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPR-----DPLVVAVFSLAVY 273
+ N D + +P A L +H + R +PL+ A+ +
Sbjct: 335 ---FVQLALDNTDDRVKAGKPVSPGFLFASLLWHHVVEHWNRRRAAGEPLIPALHTAMDE 391
Query: 274 NGGDMLEAVKIARRINKSHDESFCELLEPR 303
E + I RR E + ++PR
Sbjct: 392 VLDRQTEQLAIQRRFTSDMKEIWS--MQPR 419
>gi|197336263|ref|YP_002156965.1| poly(A) polymerase [Vibrio fischeri MJ11]
gi|197317753|gb|ACH67200.1| poly(A) polymerase (PAP) (Plasmid copy number protein) [Vibrio
fischeri MJ11]
Length = 475
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 112/215 (52%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F ++EV++F + +
Sbjct: 81 LLGQEPKDFDIATNATPEQIKKLFRNCRLIGRRFRLAHILFGRDVIEVATFRGHHKEENE 140
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N + ++ I+DY GIED++ +
Sbjct: 141 KKNISAQSDEGMLLRDNVYGTVEEDAERRDFTVNAMYYNIADYSIHDYANGIEDLKNGII 200
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L +TA + LSP + + RL E
Sbjct: 201 RLIGDPETRYREDPVRMLRAVRFAAKLDMTICDKTAAPIAELSPLLRDIPAARLFEESLK 260
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G+ + +L F L + L P+ +L + G
Sbjct: 261 LLQTGNGLNTYWMLRDFNLFQQLFPVLTPFLTEEG 295
>gi|91794520|ref|YP_564171.1| poly(A) polymerase [Shewanella denitrificans OS217]
gi|91716522|gb|ABE56448.1| poly(A) polymerase [Shewanella denitrificans OS217]
Length = 449
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 127/260 (48%), Gaps = 28/260 (10%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------------S 52
PKDFD++T+A E+ +F C +VG+RF + H+ F ++EV++F S
Sbjct: 52 PKDFDVVTNATPDEIKALFRNCRLVGRRFRLAHIVFGRDVIEVATFRGHHGENSDNISKS 111
Query: 53 TSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ R RD Y G ++D R RDFT+N L +D I Y GG++D+
Sbjct: 112 NAEGRLLRDNVY------GEIDEDAER------RDFTVNALYYDISDYSIRSYGGGMDDL 159
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
R ++ + T ++ED R+LRA+R A +L + TA + L+ + + R+
Sbjct: 160 RNKSIKMIGDPETRYREDPVRMLRAVRFATKLDMQIDPVTAAPITELASLLADIPAARMY 219
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E+ + G AEA+ L+ KFGL L P A L + + + ++ ++ N D
Sbjct: 220 EEVLKLFFAGKAEANFELMLKFGLFAPLFPQVQALLDESP---KGDTARMVRAIMRNTDL 276
Query: 233 LLAPDRPCHSSLWIAILAFH 252
++ D+P + + A + ++
Sbjct: 277 RVSQDKPVTPAFFYAAMLWY 296
>gi|226328934|ref|ZP_03804452.1| hypothetical protein PROPEN_02836 [Proteus penneri ATCC 35198]
gi|225202120|gb|EEG84474.1| poly(A) polymerase [Proteus penneri ATCC 35198]
Length = 473
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 114/221 (51%), Gaps = 16/221 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A ++V R+F +VG+RF + H+ F ++EV++F S
Sbjct: 73 LLGKKPKDFDIATNATPEDVRRLFRNSRLVGRRFRLAHIMFGPEVIEVATFRGSHEDHEV 132
Query: 61 DFKYEFERP----------IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
+ ++ G E+D IR RDFT+N L + + DY+GG+
Sbjct: 133 SDNNQSQQAQSGMLLRDNIFGSIEEDAIR------RDFTLNSLYYGVDDFAVRDYVGGLA 186
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D++ ++ + T ++ED R+LRAIR A++L + + ETA + L+P + + R
Sbjct: 187 DLKAGIIRLIGDPETRYREDPVRMLRAIRFASKLDMQIAPETAEPISRLAPLLRNIPSAR 246
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
L E +L G + +L+ + LLE L P+ A+ + +
Sbjct: 247 LFEESLKLLQTGQGYKTYKLMCRHQLLEPLFPLIASKMTEQ 287
>gi|134095805|ref|YP_001100880.1| poly(A) polymerase [Herminiimonas arsenicoxydans]
gi|133739708|emb|CAL62759.1| Poly(A) polymerase [Herminiimonas arsenicoxydans]
Length = 453
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---STSGRR 57
+L PKDFDI T+A ++V ++F + I+GKRF I HV F ++EV++F S+ G
Sbjct: 66 LLGVKPKDFDIATNATPEQVKKLFRRAFIIGKRFQIVHVMFGQDLLEVTTFRGSSSDGAP 125
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ + G +D L+RDFTIN + +DP + + DY GGI DIR +
Sbjct: 126 KDEHGRVLRDNTFGEQHED------ALRRDFTINAMYYDPATQTVLDYHGGIADIRTRTL 179
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + ++ED R+LR +R AA+L F + +T+ + ++P I + R+ EM
Sbjct: 180 RIIGVPEARYREDPVRLLRVVRFAAKLNFAIAPDTSAPIAVMAPLINNVPTARVFDEMLK 239
Query: 178 MLAYGSAEASLRLLWK 193
+L G A A L+ L K
Sbjct: 240 LLMSGHALACLQQLRK 255
>gi|157147427|ref|YP_001454746.1| poly(A) polymerase I [Citrobacter koseri ATCC BAA-895]
gi|157084632|gb|ABV14310.1| hypothetical protein CKO_03226 [Citrobacter koseri ATCC BAA-895]
Length = 454
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 150/314 (47%), Gaps = 29/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F + S
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNDS 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRATSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + + L ++ L + L P Y ++G ++ ++ + N D
Sbjct: 236 FEESLKLLQAGYGFETYKKLREYSLFQPLFPTITRYFTENGDSAMER---IIAQVLKNTD 292
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
+ D + + A + ++ PL+ +A +G +A +A +N+
Sbjct: 293 NRIHNDMRVNPAFLFAAMFWY---------PLLEMAQKIAQESGLAYYDAFALA--MNEV 341
Query: 292 HDESFCELLEPRDL 305
DE+ L P+ L
Sbjct: 342 LDEACRSLAIPKRL 355
>gi|69145904|gb|AAZ03499.1| poly(A) polymerase [Photobacterium angustum S14]
Length = 480
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 24/269 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 78 LLDKQPKDFDIATNATPEDIKKLFRNCRLIGRRFRLAHILFGRDIIEVATF----RGHHS 133
Query: 61 DFKYEFERPIGCDEKDFIRWR-----------------NCLQRDFTINGLMFDPYAKIIY 103
D + P +K I R + +RDFTIN L + +
Sbjct: 134 DAPIQATAPKDSKQKPQISSRSQEGMLLRDNVYGTIEEDAERRDFTINALYYSVKDFTVT 193
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+ V+ + T ++ED R+LRA+R A +L TA +K L+P +
Sbjct: 194 DYANGVHDLNNRIVRLMGDPETRYREDPVRMLRAVRFAVKLDMEIDPATAAPIKDLAPLM 253
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
L + RL E +L G + R+L ++ L + L PI A + + + +K ++
Sbjct: 254 LDIPSARLFEESLKLLQSGQGLETYRMLREYNLFQQLFPILADHFTEDNSSQTEK---MI 310
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
+ ++ DK +A D+ + + A + ++
Sbjct: 311 EHILASTDKRIAEDKRVNPAFIYAAMLWY 339
>gi|109900234|ref|YP_663489.1| poly(A) polymerase [Pseudoalteromonas atlantica T6c]
gi|109702515|gb|ABG42435.1| poly(A) polymerase [Pseudoalteromonas atlantica T6c]
Length = 415
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 110/209 (52%), Gaps = 8/209 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T A ++V +F C ++G+RF + HV F ++EV++F
Sbjct: 23 LLGKKPKDFDVTTDATPEQVKELFRNCRLIGRRFRLAHVVFGREVIEVATFRGHHPVEDE 82
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ K E D +R + +RDFT+N + ++ I+D+ G+E ++
Sbjct: 83 NAK-EQNLSKQSDHGQLLRDNVFGSIEEDAERRDFTVNAMYYNIADYSIHDFANGMEAVK 141
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
K ++ + +T ++ED R+LRA+R A +LG + S ETA + L+P + + RL
Sbjct: 142 KRQITMIGDPATRYREDPVRMLRAVRFAVKLGMKISPETAKPMYELAPLMANIPPARLFE 201
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
E+ +L G + +LL +FGL E L P
Sbjct: 202 EVLKLLLSGQGLETYKLLNEFGLFEQLFP 230
>gi|407691793|ref|YP_006816582.1| polyA polymerase [Actinobacillus suis H91-0380]
gi|407387850|gb|AFU18343.1| polyA polymerase [Actinobacillus suis H91-0380]
Length = 510
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 116/228 (50%), Gaps = 7/228 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L PKDFD+ T+A+ +E+ ++F QC ++G+RF + H+ F I EV++F S
Sbjct: 112 LLGHKPKDFDVATNAKPEEIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHSNHS 171
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + +RDFT+N L +DP +I+D+ GI D++ K+
Sbjct: 172 SDKISKVSEEGMLLRDNVYGTLREDAQRRDFTVNSLYYDPKHNLIFDFFDGIADLKAGKL 231
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LRA+R A+L + T ++ L+ + + RL E
Sbjct: 232 RLIGDPVVRYQEDPVRMLRAVRFMAKLDMFLDKPTDAPIRELAHLLKNIPAARLFDESLK 291
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+L G + +L+ ++GL E L P+ + + R D + +LS
Sbjct: 292 LLQSGQGFKTYQLMRQYGLFEQLFPVLVPFFTE----RNDSNAERMLS 335
>gi|438000209|ref|YP_007183942.1| poly(A) polymerase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|429339443|gb|AFZ83865.1| poly(A) polymerase [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
Length = 417
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 100/179 (55%), Gaps = 4/179 (2%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T+A +++ +F + I+G+RF + HV F I+E+S+F TS +D E
Sbjct: 54 PKDFDVATNATPEQIKHIFKRARIIGRRFRLVHVIFHKEIIEISTFRTSHIDIKQD---E 110
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
F R I D + + +RDFTIN L +D + I DY GI D++K K+ + AS
Sbjct: 111 FGR-ILTDNYFGSQLEDSTRRDFTINSLYYDTKTETIIDYHNGIHDLKKKKINIIGEASI 169
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSA 184
++ED RILRAIR A+++G +T ++ + + + RL E+ +L G+A
Sbjct: 170 RYKEDPVRILRAIRFASKIGGSIGHDTLKHIEKQKQLLSNIPQARLFDELIKILTCGNA 228
>gi|343498275|ref|ZP_08736314.1| poly(A) polymerase [Vibrio tubiashii ATCC 19109]
gi|418480933|ref|ZP_13049986.1| poly(A) polymerase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342824716|gb|EGU59251.1| poly(A) polymerase [Vibrio tubiashii ATCC 19109]
gi|384571458|gb|EIF01991.1| poly(A) polymerase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 455
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 140/297 (47%), Gaps = 16/297 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F + S+
Sbjct: 65 LLGQAPKDFDIATNATPEQIRQLFKNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSK 124
Query: 61 DFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ + + + G ++D R RDFT+N + + I+DY GGIED+
Sbjct: 125 NVSQQSKEGMLLRDNVYGTIDEDAER------RDFTVNAMYYSIGDYSIHDYAGGIEDLE 178
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LRAIR A +L F +TA ++ LS + + RL
Sbjct: 179 DKLIRLLGDPETRYREDPVRMLRAIRFAVKLDFDIEEDTAEPIEELSTLLQDIPPARLYE 238
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL--- 230
E ML G + L+ ++ L + L P A + + + ++ +L+L
Sbjct: 239 ESLKMLQSGHGLETYHLMREYNLFQQLFPTIAEFFTEDYSSQTEQMLDLVLDSTDQRIEE 298
Query: 231 DKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARR 287
K + P + LW + L ++ + A+ + Y D + + I RR
Sbjct: 299 GKRINPAFMFAAMLWYPLQEKANQLMEKRKLSFYDAIMEASNYVLDDQVRTIAIPRR 355
>gi|407801157|ref|ZP_11148001.1| poly(A) polymerase [Alcanivorax sp. W11-5]
gi|407024594|gb|EKE36337.1| poly(A) polymerase [Alcanivorax sp. W11-5]
Length = 474
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 125/250 (50%), Gaps = 11/250 (4%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFSRDFKY 64
PKDFD++T+A +E+ RVF I+G+RF + HV F+ ++EV++F + +G+ D ++
Sbjct: 77 PKDFDVVTNAHPEEIERVFRGARIIGRRFRLVHVRFKGEVIEVATFRAVTGQEEDEDDRH 136
Query: 65 EFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVI 121
G +D + + L+RDFT N L +D ++D+ + DI ++ +
Sbjct: 137 SRRSAGGQILRDNVYGTIEEDALRRDFTCNALYYDIRDFSLHDFADSLRDIEHRTLRLIG 196
Query: 122 PASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAY 181
++ED R++RA+R AA+L F T + L+P + ++ RL E+ +
Sbjct: 197 DPEQRYREDPVRMIRAVRFAAKLDFSIDPATEEPLARLAPLLQQVPSARLFEEVLKLFLS 256
Query: 182 GSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL--SLFSNLDKLLAPDRP 239
G + + LL K L + L P A L D S+L L + N D+ LA ++P
Sbjct: 257 GQGQRTFALLQKHHLFDALFPATAEALDDD-----DGASDLKLIHAAMRNTDRRLAQEKP 311
Query: 240 CHSSLWIAIL 249
+ A+L
Sbjct: 312 VTPAFLFAVL 321
>gi|172087758|ref|YP_205549.2| poly(A) polymerase [Vibrio fischeri ES114]
gi|171902346|gb|AAW86661.2| poly(A) polymerase I [Vibrio fischeri ES114]
Length = 475
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 112/215 (52%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F ++EV++F + +
Sbjct: 81 LLGQEPKDFDIATNATPEQIKKLFRNCRLIGRRFRLAHILFGRDVIEVATFRGHHKEDNE 140
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N + ++ I+DY GIED++ +
Sbjct: 141 KKNISAQSDEGMLLRDNVYGTVEEDAERRDFTVNAMYYNIADYSIHDYANGIEDLKNGII 200
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L +TA + LSP + + RL E
Sbjct: 201 RLIGDPETRYREDPVRMLRAVRFAAKLDMTICDKTAAPIAELSPLLRDIPAARLFEESLK 260
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G+ + +L F L + L P+ +L + G
Sbjct: 261 LLQTGNGLNTYWMLRDFNLFQQLFPVLTPFLTEEG 295
>gi|451813135|ref|YP_007449588.1| poly(A) polymerase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|451779104|gb|AGF49984.1| poly(A) polymerase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 430
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 100/179 (55%), Gaps = 4/179 (2%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T+A +++ +F + I+G+RF + HV F I+E+S+F TS +D E
Sbjct: 67 PKDFDVATNATPEQIKHIFKRARIIGRRFRLVHVIFHKEIIEISTFRTSHIDIKQD---E 123
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
F R I D + + +RDFTIN L +D + I DY GI D++K K+ + AS
Sbjct: 124 FGR-ILTDNYFGSQLEDSTRRDFTINSLYYDTKTETIIDYHNGIHDLKKKKINIIGEASI 182
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSA 184
++ED RILRAIR A+++G +T ++ + + + RL E+ +L G+A
Sbjct: 183 RYKEDPVRILRAIRFASKIGGSIGHDTLKHIEKQKQLLSNIPQARLFDELIKILTCGNA 241
>gi|119944355|ref|YP_942035.1| poly(A) polymerase [Psychromonas ingrahamii 37]
gi|119862959|gb|ABM02436.1| poly(A) polymerase [Psychromonas ingrahamii 37]
Length = 459
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 142/289 (49%), Gaps = 19/289 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L PKDFDI T+A +EV +F C ++G+RF + H+ F ++EV++F
Sbjct: 60 LLGLKPKDFDITTNATPEEVKALFRNCRLIGRRFRLAHILFGREVIEVATFRGHHDDDNG 119
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+D + + G +D + + +RDFT+N L +D IYD+ G++D+++ +
Sbjct: 120 QDAQKVKQSKAGMLLRDNVYGSLEEDAERRDFTVNALYYDIADFAIYDFCNGMKDLQERR 179
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
+ + ++ED R++RAIR +A+L S E A ++ L+P + + R E+
Sbjct: 180 LTLIGDPEVRYREDPVRMIRAIRFSAKLDLTISEECAEPIRRLAPLLQDIPAARHFDEVI 239
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L G + RLL ++ LL+VL PI L K G DK + L+ ++ D+ +A
Sbjct: 240 KLLLSGQGLVTYRLLKEYKLLQVLFPI----LFKDG--EDDKATQLIEQALTDTDRRIAQ 293
Query: 237 DRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIA 285
+ + AI+ ++ PL +A G D +A +A
Sbjct: 294 GKHLTPAYIYAIILWY---------PLEQRAQEMAFEGGLDYYDAFLLA 333
>gi|424794802|ref|ZP_18220732.1| polynucleotide adenyltransferase [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422795788|gb|EKU24417.1| polynucleotide adenyltransferase [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 445
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 21/260 (8%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A ++V ++F C ++G+RF + HV + I+EV++F + S D + +
Sbjct: 54 PKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVYGREIIEVATFRANVDDGSGDRELD 113
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D +R RDFT N L + + DY GG D++ ++ +
Sbjct: 114 NGRLVRDNVYGSIEDDAVR------RDFTCNALYYAIEDFSVRDYTGGFADVQARLMRMI 167
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
++ED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 168 GDPEQRYREDPVRMLRAVRLAAKLDFEIEPSTAEPIPRLAGLLAEAAPARLFEEVLKLFL 227
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYL--VKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
G AS L ++GLL L P AA L + G RR +L+ N D +A D
Sbjct: 228 SGDGVASFEGLERYGLLAALFPESAAALHSNRSGALRR-----MLIEGLRNTDARVANDE 282
Query: 239 PCHSSLWIAIL---AFHKAL 255
P + A+L A+ +AL
Sbjct: 283 PVSPAFLFALLLWPAYCRAL 302
>gi|440732116|ref|ZP_20912081.1| poly(a) polymerase [Xanthomonas translucens DAR61454]
gi|440370241|gb|ELQ07174.1| poly(a) polymerase [Xanthomonas translucens DAR61454]
Length = 447
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 21/260 (8%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A ++V ++F C ++G+RF + HV + I+EV++F + S D + +
Sbjct: 54 PKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVYGREIIEVATFRANVDDGSGDRELD 113
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D +R RDFT N L + + DY GG D++ ++ +
Sbjct: 114 NGRLVRDNVYGSIEDDAVR------RDFTCNALYYAIEDFSVRDYTGGFADVQARLMRMI 167
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
++ED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 168 GDPEQRYREDPVRMLRAVRLAAKLNFEIEPNTAEPLPRLAGLLAEAAPARLFEEVLKLFL 227
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYL--VKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
G AS L ++GLL L P AA L + G RR +L+ N D +A D
Sbjct: 228 SGDGVASFEGLERYGLLAALFPESAAALHSNRSGALRR-----MLIEGLRNTDARVANDE 282
Query: 239 PCHSSLWIAIL---AFHKAL 255
P + A+L A+ +AL
Sbjct: 283 PVSPAFLFALLLWPAYCRAL 302
>gi|399907823|ref|ZP_10776375.1| poly(A) polymerase [Halomonas sp. KM-1]
Length = 425
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 129/257 (50%), Gaps = 19/257 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTS-----G 55
+L ++PKDFD+ T A ++V +F I+G+RF I HV F ++EV++F + G
Sbjct: 35 LLGKMPKDFDVATDATPEQVRELFRNSRIIGRRFRIVHVRFGREVIEVTTFRGTHSDDHG 94
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
++ ++ + G ++D IR RDFT+N L + I+D+ G+ DI
Sbjct: 95 DHIAQQSEHGLLLRDNVWGSIQEDAIR------RDFTVNALYYSIADFSIHDFADGMRDI 148
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
++ + + ++ED R+LRA+R AA+L F + ++ ++ L+P +L++ RL
Sbjct: 149 ESRTLRLIGDPAVRYREDPVRMLRAVRFAAKLDFHIAADSEAPIEKLAPLLLQIPSARLF 208
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E+ + G A+ RLL +GL +L P +V+ + L+ ++ DK
Sbjct: 209 DEVLKLFMAGHGVATFRLLRHYGLFAMLFPETDEAMVEQPW-----AEPLIEHALASTDK 263
Query: 233 LLAPDRPCHSSLWIAIL 249
+ +RP + A L
Sbjct: 264 RIHEERPVTPAFLFAAL 280
>gi|422909110|ref|ZP_16943762.1| poly(A) polymerase [Vibrio cholerae HE-09]
gi|341635700|gb|EGS60406.1| poly(A) polymerase [Vibrio cholerae HE-09]
Length = 457
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQETSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|359394187|ref|ZP_09187240.1| Poly(A) polymerase [Halomonas boliviensis LC1]
gi|357971434|gb|EHJ93879.1| Poly(A) polymerase [Halomonas boliviensis LC1]
Length = 460
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 139/302 (46%), Gaps = 24/302 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L ++PKDFD+ T+A ++V +F ++G+RF I HV F ++EV++F +
Sbjct: 76 LLGKMPKDFDVATNATPEQVRDLFRNSRLIGRRFRIVHVRFGREVIEVTTFRGKPQDEHG 135
Query: 61 DFKYEFERPIGCDEKDFIR---WRN----CLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D DE +R W N L+RDFT+N L ++ I D+ G EDI+
Sbjct: 136 DHIAH-----QSDEGLLLRDNVWGNIEEDALRRDFTVNALYYNIADFSITDFANGAEDIK 190
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + +T ++ED R+LRA+R AA+L F T + +P +L++ RL
Sbjct: 191 TRTLRLIGDPATRYREDPVRMLRAVRFAAKLDFTLDPATEAPMYDQAPLLLQIPAARLFD 250
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G + RLL +GL +L P + L+ +N DK
Sbjct: 251 EVLKLFMSGHGLVTFRLLSHYGLFGMLFPEAEEAMADA-----AWAEELIEQALTNTDKR 305
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARR 287
+A +RP + LW + +AL +Q P + A+ + A LE I +R
Sbjct: 306 IAEERPVTPAFLLAAFLWAPVKHRQEAL-EQEGMPPIPALQAAAQQVVSRQLEFTSIPKR 364
Query: 288 IN 289
Sbjct: 365 FG 366
>gi|333899156|ref|YP_004473029.1| poly(A) polymerase [Pseudomonas fulva 12-X]
gi|333114421|gb|AEF20935.1| poly(A) polymerase [Pseudomonas fulva 12-X]
Length = 465
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/261 (31%), Positives = 121/261 (46%), Gaps = 33/261 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------------S 52
PKDFD+ TSA ++V F ++G+RF + HVHF I+E ++F +
Sbjct: 72 PKDFDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIETATFRANHPEGDEQENSN 131
Query: 53 TSGR----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
S R R RD Y G E D R RDFTIN L +DP ++ I DY G
Sbjct: 132 QSSRNESGRILRDNVY------GTLEDDAQR------RDFTINALYYDPVSERILDYANG 179
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ DIR V+ + + +QED R+LRA+R AA+L F + +A + L+ + +
Sbjct: 180 MHDIRNNLVRLIGNPTQRYQEDPVRMLRAVRFAAKLDFDIEKHSADPIHDLAQLLAGIPA 239
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E+ + G A + LL +GL L P AA L ++ + L+ +
Sbjct: 240 ARLFDEVLKLFLSGYAIYTYDLLVDYGLFGQLFPASAAALRQNP----EYTDTLIRNALD 295
Query: 229 NLDKLLAPDRPCHSSLWIAIL 249
N D + +P + A L
Sbjct: 296 NTDLRIHQGKPVTPAFLFAAL 316
>gi|299533945|ref|ZP_07047306.1| poly(A) polymerase [Comamonas testosteroni S44]
gi|298718072|gb|EFI59068.1| poly(A) polymerase [Comamonas testosteroni S44]
Length = 521
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 26/228 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSF----- 51
+L PKDFD+ T A ++V +F + I+GKRF I HV + EN ++EVS+F
Sbjct: 71 LLGLRPKDFDVATDATPEQVKNLFRRAFIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLD 130
Query: 52 STSGRRFSRDFKYEFERPIGCDE---------KDFIRW----RNCLQRDFTINGLMFDPY 98
+++ + S + + + G +D + W ++ +RDFTIN + +DP
Sbjct: 131 NSAAEQVSGNERTSKNQLAGLKHAVDASGRVLRDNV-WGPQDQDATRRDFTINAMYYDPE 189
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155
+I+ DY GGI D +K ++ + +T ++ED RI+RA+R AA+L GF+ +TA
Sbjct: 190 TQIVVDYHGGIADAKKKVLRMIGDPATRYREDPVRIIRAVRFAAKLSGKGFKLEAKTAKP 249
Query: 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPI 203
+ P + ++ + RL EM +L G A AS+ L + GL + P+
Sbjct: 250 LVECEPLLQEVPQSRLFDEMLKLLQTGHALASVAQLKELGLSRGIYPL 297
>gi|448747678|ref|ZP_21729334.1| Poly(A) polymerase, PcnB [Halomonas titanicae BH1]
gi|445564790|gb|ELY20906.1| Poly(A) polymerase, PcnB [Halomonas titanicae BH1]
Length = 460
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 139/302 (46%), Gaps = 24/302 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L ++PKDFD+ T+A ++V +F ++G+RF I HV F ++EV++F +
Sbjct: 76 LLGKMPKDFDVATNATPEQVRDLFRNSRLIGRRFRIVHVRFGREVIEVTTFRGKPQDEHG 135
Query: 61 DFKYEFERPIGCDEKDFIR---WRN----CLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D DE +R W N L+RDFT+N L ++ I D+ G EDI+
Sbjct: 136 DHIAH-----QSDEGLLLRDNVWGNIEEDALRRDFTVNALYYNIADFSITDFANGAEDIK 190
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + +T ++ED R+LRA+R AA+L F T + +P +L++ RL
Sbjct: 191 TRTLRLIGDPATRYREDPVRMLRAVRFAAKLDFTLDPATEAPMYDQAPLLLQIPPARLFD 250
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G + RLL +GL +L P + L+ +N DK
Sbjct: 251 EVLKLFMSGHGLVTFRLLSHYGLFGMLFPEAEEAMADA-----AWAEELIEQALTNTDKR 305
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARR 287
+A +RP + LW + +AL +Q P + A+ + A LE I +R
Sbjct: 306 IAEERPVTPAFLLAAFLWAPVKHRQEAL-EQEGMPPIPALQAAAQQVVSRQLEFTSIPKR 364
Query: 288 IN 289
Sbjct: 365 FG 366
>gi|418531618|ref|ZP_13097529.1| poly(A) polymerase [Comamonas testosteroni ATCC 11996]
gi|371451120|gb|EHN64161.1| poly(A) polymerase [Comamonas testosteroni ATCC 11996]
Length = 521
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 26/228 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSF----- 51
+L PKDFD+ T A ++V +F + I+GKRF I HV + EN ++EVS+F
Sbjct: 71 LLGLRPKDFDVATDATPEQVKNLFRRAFIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLD 130
Query: 52 STSGRRFSRDFKYEFERPIGCDE---------KDFIRW----RNCLQRDFTINGLMFDPY 98
+++ + S + + + G +D + W ++ +RDFTIN + +DP
Sbjct: 131 NSAAEQVSGNERTSKNQLAGLKHAVDASGRVLRDNV-WGPQDQDATRRDFTINAMYYDPE 189
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155
+I+ DY GGI D +K ++ + +T ++ED RI+RA+R AA+L GF+ +TA
Sbjct: 190 TQIVVDYHGGIADAKKKVLRMIGDPATRYREDPVRIIRAVRFAAKLSGKGFKLEAKTAKP 249
Query: 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPI 203
+ P + ++ + RL EM +L G A AS+ L + GL + P+
Sbjct: 250 LVECEPLLQEVPQSRLFDEMLKLLQTGHALASVAQLKELGLSRGIYPL 297
>gi|264679761|ref|YP_003279670.1| poly(A) polymerase [Comamonas testosteroni CNB-2]
gi|262210276|gb|ACY34374.1| poly(A) polymerase [Comamonas testosteroni CNB-2]
Length = 521
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 26/228 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSF----- 51
+L PKDFD+ T A ++V +F + I+GKRF I HV + EN ++EVS+F
Sbjct: 71 LLGLRPKDFDVATDATPEQVKNLFRRAFIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLD 130
Query: 52 STSGRRFSRDFKYEFERPIGCDE---------KDFIRW----RNCLQRDFTINGLMFDPY 98
+++ + S + + + G +D + W ++ +RDFTIN + +DP
Sbjct: 131 NSAAEQVSGNERTSKNQLAGLKHAVDASGRVLRDNV-WGPQDQDATRRDFTINAMYYDPE 189
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155
+I+ DY GGI D +K ++ + +T ++ED RI+RA+R AA+L GF+ +TA
Sbjct: 190 TQIVVDYHGGIADAKKKVLRMIGDPATRYREDPVRIIRAVRFAAKLSGKGFKLEAKTAKP 249
Query: 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPI 203
+ P + ++ + RL EM +L G A AS+ L + GL + P+
Sbjct: 250 LVECEPLLQEVPQSRLFDEMLKLLQTGHALASVAQLKELGLSRGIYPL 297
>gi|221065686|ref|ZP_03541791.1| poly(A) polymerase [Comamonas testosteroni KF-1]
gi|220710709|gb|EED66077.1| poly(A) polymerase [Comamonas testosteroni KF-1]
Length = 521
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 122/228 (53%), Gaps = 26/228 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSF----- 51
+L PKDFD+ T A ++V +F + I+GKRF I HV + EN ++EVS+F
Sbjct: 71 LLGLRPKDFDVATDATPEQVKNLFRRAFIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLD 130
Query: 52 STSGRRFSRDFKYEFERPIGCDE---------KDFIRW----RNCLQRDFTINGLMFDPY 98
+++ + S + + + G +D + W ++ +RDFTIN + +DP
Sbjct: 131 NSAAEQVSGNERTSKNQLAGLKHAVDASGRVLRDNV-WGPQDQDATRRDFTINAMYYDPE 189
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155
+I+ DY GGI D +K ++ + +T ++ED RI+RA+R AA+L GF+ +TA
Sbjct: 190 TQIVVDYHGGIADAKKKVLRMIGDPATRYREDPVRIIRAVRFAAKLSSKGFKLEAKTAKP 249
Query: 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPI 203
+ P + ++ + RL EM +L G A AS+ L + GL + P+
Sbjct: 250 LVECEPLLQEVPQSRLFDEMLKLLQTGHALASVAQLKELGLSRGIYPL 297
>gi|433676605|ref|ZP_20508697.1| poly(A) polymerase [Xanthomonas translucens pv. translucens DSM
18974]
gi|430818295|emb|CCP39006.1| poly(A) polymerase [Xanthomonas translucens pv. translucens DSM
18974]
Length = 421
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 21/260 (8%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T A ++V ++F C ++G+RF + HV + I+EV++F + S D + +
Sbjct: 28 PKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVYGREIIEVATFRANVDDGSGDRELD 87
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
R + G E D +R RDFT N L + + DY GG D++ ++ +
Sbjct: 88 NGRLVRDNVYGSIEDDAVR------RDFTCNALYYAIEDFSVRDYTGGFADVQARLMRMI 141
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
++ED R+LRA+R+AA+L F TA + L+ + + RL E+ +
Sbjct: 142 GDPEQRYREDPVRMLRAVRLAAKLNFEIEPSTAEPLPRLAGLLAEAAPARLFEEVLKLFL 201
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYL--VKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
G AS L ++GLL L P AA L + G RR +L+ N D +A D
Sbjct: 202 SGDGVASFEGLERYGLLAALFPESAAALHSNRSGALRR-----MLIEGLRNTDARVANDE 256
Query: 239 PCHSSLWIAIL---AFHKAL 255
P + A+L A+ +AL
Sbjct: 257 PVSPAFLFALLLWPAYCRAL 276
>gi|384423847|ref|YP_005633205.1| Poly(A) polymerase [Vibrio cholerae LMA3984-4]
gi|327483400|gb|AEA77807.1| Poly(A) polymerase [Vibrio cholerae LMA3984-4]
Length = 457
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|365846667|ref|ZP_09387169.1| polynucleotide adenylyltransferase [Yokenella regensburgei ATCC
43003]
gi|364573799|gb|EHM51286.1| polynucleotide adenylyltransferase [Yokenella regensburgei ATCC
43003]
Length = 453
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ TSA +V ++F C +VG+RF + HV F I+EV++F S
Sbjct: 62 LLGKKPKDFDVTTSATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHDGSPD 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRATSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 176 LQDGIIRLIGNPETRYREDPVRMLRAVRFAAKLNMRISPETAEPIPRLATLMNDVPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + R L + L + L P + Y ++G
Sbjct: 236 FEESLKLLQAGYGFETYRGLRECNLFQPLFPTISRYFTENG 276
>gi|409203453|ref|ZP_11231656.1| poly(A) polymerase [Pseudoalteromonas flavipulchra JG1]
Length = 440
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 131/279 (46%), Gaps = 40/279 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD++T+A +++ ++F C ++G+RF + H+ F I+EV++
Sbjct: 52 MLGIEPKDFDVVTNATPEQIKKLFRNCRLIGRRFRLAHIVFGREIIEVATMRGHHQSDDS 111
Query: 52 ------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDY 105
++ + RD Y G E+D R RDFTIN L + + D+
Sbjct: 112 CATTSQASEHGQLLRDNVY------GSIEEDAER------RDFTINALYYSINDFTLRDF 159
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ DI+ K++ + T ++ED R+LRAIR A +L + T +K L+P +
Sbjct: 160 AGGVADIKARKIELIGDPETRYREDPVRMLRAIRFATKLDMEIATPTRTPIKALAPLLGH 219
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK--HGFRRRDKRSNLL 223
+ RL E + G AE + + ++GL L P L + + F RR +
Sbjct: 220 IPAARLFEETLKLFLNGKAEENFLQMREYGLFAQLFPALDKILAQPDNDFERR-----FI 274
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALS 256
+F+N D + D+ + LW ILA +AL+
Sbjct: 275 QQMFANTDSRINADKKVTPAFIYAALLWFPILAKSEALA 313
>gi|229512859|ref|ZP_04402326.1| poly(A) polymerase [Vibrio cholerae TMA 21]
gi|229520886|ref|ZP_04410308.1| poly(A) polymerase [Vibrio cholerae TM 11079-80]
gi|229525250|ref|ZP_04414655.1| poly(A) polymerase [Vibrio cholerae bv. albensis VL426]
gi|229530403|ref|ZP_04419791.1| poly(A) polymerase [Vibrio cholerae 12129(1)]
gi|254226863|ref|ZP_04920433.1| polyA polymerase [Vibrio cholerae V51]
gi|254291266|ref|ZP_04962061.1| polyA polymerase [Vibrio cholerae AM-19226]
gi|262190661|ref|ZP_06048894.1| poly(A) polymerase [Vibrio cholerae CT 5369-93]
gi|297580723|ref|ZP_06942649.1| polyA polymerase [Vibrio cholerae RC385]
gi|417819451|ref|ZP_12466068.1| poly(A) polymerase [Vibrio cholerae HE39]
gi|417823717|ref|ZP_12470309.1| poly(A) polymerase [Vibrio cholerae HE48]
gi|419829140|ref|ZP_14352629.1| poly(A) polymerase family protein [Vibrio cholerae HC-1A2]
gi|419831935|ref|ZP_14355401.1| poly(A) polymerase family protein [Vibrio cholerae HC-61A2]
gi|419835516|ref|ZP_14358961.1| poly(A) polymerase [Vibrio cholerae HC-46B1]
gi|421342097|ref|ZP_15792504.1| poly(A) polymerase [Vibrio cholerae HC-43B1]
gi|421350426|ref|ZP_15800792.1| poly(A) polymerase [Vibrio cholerae HE-25]
gi|421353403|ref|ZP_15803736.1| poly(A) polymerase [Vibrio cholerae HE-45]
gi|422306001|ref|ZP_16393187.1| poly(A) polymerase family protein [Vibrio cholerae CP1035(8)]
gi|422916307|ref|ZP_16950646.1| poly(A) polymerase [Vibrio cholerae HC-02A1]
gi|422921819|ref|ZP_16955026.1| poly(A) polymerase [Vibrio cholerae BJG-01]
gi|423733879|ref|ZP_17707095.1| poly(A) polymerase family protein [Vibrio cholerae HC-41B1]
gi|423816856|ref|ZP_17715250.1| poly(A) polymerase family protein [Vibrio cholerae HC-55C2]
gi|423848942|ref|ZP_17719035.1| poly(A) polymerase family protein [Vibrio cholerae HC-59A1]
gi|423878907|ref|ZP_17722643.1| poly(A) polymerase family protein [Vibrio cholerae HC-60A1]
gi|423947555|ref|ZP_17733514.1| poly(A) polymerase family protein [Vibrio cholerae HE-40]
gi|423976824|ref|ZP_17737061.1| poly(A) polymerase family protein [Vibrio cholerae HE-46]
gi|423996728|ref|ZP_17739992.1| poly(A) polymerase [Vibrio cholerae HC-02C1]
gi|424008164|ref|ZP_17751114.1| poly(A) polymerase [Vibrio cholerae HC-44C1]
gi|424015430|ref|ZP_17755278.1| poly(A) polymerase [Vibrio cholerae HC-55B2]
gi|424018540|ref|ZP_17758340.1| poly(A) polymerase [Vibrio cholerae HC-59B1]
gi|424589842|ref|ZP_18029289.1| poly(A) polymerase [Vibrio cholerae CP1037(10)]
gi|424623909|ref|ZP_18062387.1| poly(A) polymerase [Vibrio cholerae HC-50A1]
gi|424628484|ref|ZP_18066791.1| poly(A) polymerase [Vibrio cholerae HC-51A1]
gi|424632446|ref|ZP_18070563.1| poly(A) polymerase [Vibrio cholerae HC-52A1]
gi|424635530|ref|ZP_18073552.1| poly(A) polymerase [Vibrio cholerae HC-55A1]
gi|424639445|ref|ZP_18077342.1| poly(A) polymerase [Vibrio cholerae HC-56A1]
gi|424647604|ref|ZP_18085282.1| poly(A) polymerase [Vibrio cholerae HC-57A1]
gi|429885353|ref|ZP_19366945.1| Poly(A) polymerase [Vibrio cholerae PS15]
gi|443526463|ref|ZP_21092544.1| poly(A) polymerase [Vibrio cholerae HC-78A1]
gi|125620614|gb|EAZ48978.1| polyA polymerase [Vibrio cholerae V51]
gi|150422830|gb|EDN14782.1| polyA polymerase [Vibrio cholerae AM-19226]
gi|229332176|gb|EEN97664.1| poly(A) polymerase [Vibrio cholerae 12129(1)]
gi|229338831|gb|EEO03848.1| poly(A) polymerase [Vibrio cholerae bv. albensis VL426]
gi|229342119|gb|EEO07115.1| poly(A) polymerase [Vibrio cholerae TM 11079-80]
gi|229350108|gb|EEO15061.1| poly(A) polymerase [Vibrio cholerae TMA 21]
gi|262033445|gb|EEY51950.1| poly(A) polymerase [Vibrio cholerae CT 5369-93]
gi|297535139|gb|EFH73974.1| polyA polymerase [Vibrio cholerae RC385]
gi|340041307|gb|EGR02274.1| poly(A) polymerase [Vibrio cholerae HE39]
gi|340048346|gb|EGR09268.1| poly(A) polymerase [Vibrio cholerae HE48]
gi|341640478|gb|EGS65066.1| poly(A) polymerase [Vibrio cholerae HC-02A1]
gi|341647888|gb|EGS71962.1| poly(A) polymerase [Vibrio cholerae BJG-01]
gi|395945600|gb|EJH56265.1| poly(A) polymerase [Vibrio cholerae HC-43B1]
gi|395954548|gb|EJH65158.1| poly(A) polymerase [Vibrio cholerae HE-25]
gi|395954750|gb|EJH65359.1| poly(A) polymerase [Vibrio cholerae HE-45]
gi|408015857|gb|EKG53426.1| poly(A) polymerase [Vibrio cholerae HC-50A1]
gi|408020989|gb|EKG58268.1| poly(A) polymerase [Vibrio cholerae HC-52A1]
gi|408026949|gb|EKG63940.1| poly(A) polymerase [Vibrio cholerae HC-56A1]
gi|408027357|gb|EKG64333.1| poly(A) polymerase [Vibrio cholerae HC-55A1]
gi|408036245|gb|EKG72688.1| poly(A) polymerase [Vibrio cholerae CP1037(10)]
gi|408036791|gb|EKG73208.1| poly(A) polymerase [Vibrio cholerae HC-57A1]
gi|408058833|gb|EKG93615.1| poly(A) polymerase [Vibrio cholerae HC-51A1]
gi|408622329|gb|EKK95317.1| poly(A) polymerase family protein [Vibrio cholerae HC-1A2]
gi|408627647|gb|EKL00451.1| poly(A) polymerase family protein [Vibrio cholerae CP1035(8)]
gi|408631649|gb|EKL04177.1| poly(A) polymerase family protein [Vibrio cholerae HC-41B1]
gi|408636655|gb|EKL08787.1| poly(A) polymerase family protein [Vibrio cholerae HC-55C2]
gi|408643830|gb|EKL15544.1| poly(A) polymerase family protein [Vibrio cholerae HC-60A1]
gi|408644960|gb|EKL16629.1| poly(A) polymerase family protein [Vibrio cholerae HC-59A1]
gi|408652097|gb|EKL23330.1| poly(A) polymerase family protein [Vibrio cholerae HC-61A2]
gi|408661613|gb|EKL32597.1| poly(A) polymerase family protein [Vibrio cholerae HE-40]
gi|408666038|gb|EKL36840.1| poly(A) polymerase family protein [Vibrio cholerae HE-46]
gi|408854379|gb|EKL94137.1| poly(A) polymerase [Vibrio cholerae HC-02C1]
gi|408858929|gb|EKL98599.1| poly(A) polymerase [Vibrio cholerae HC-46B1]
gi|408861931|gb|EKM01495.1| poly(A) polymerase [Vibrio cholerae HC-55B2]
gi|408866034|gb|EKM05423.1| poly(A) polymerase [Vibrio cholerae HC-44C1]
gi|408869808|gb|EKM09096.1| poly(A) polymerase [Vibrio cholerae HC-59B1]
gi|429227854|gb|EKY33820.1| Poly(A) polymerase [Vibrio cholerae PS15]
gi|443455175|gb|ELT18961.1| poly(A) polymerase [Vibrio cholerae HC-78A1]
Length = 457
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|423686909|ref|ZP_17661717.1| poly(A) polymerase [Vibrio fischeri SR5]
gi|371493668|gb|EHN69268.1| poly(A) polymerase [Vibrio fischeri SR5]
Length = 475
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 112/215 (52%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F ++EV++F + +
Sbjct: 81 LLGQEPKDFDIATNATPEQIKKLFRNCRLIGRRFRLAHILFGRDVIEVATFRGHHKEDNE 140
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFT+N + ++ I+DY GIED++ +
Sbjct: 141 KKNISAQSDEGMLLRDNVYGTVEEDAERRDFTVNAMYYNIADYSIHDYANGIEDLKNGII 200
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L +TA + LSP + + RL E
Sbjct: 201 RLIGDPETRYREDPVRMLRAVRFAAKLDMTICDKTAAPIADLSPLLRDIPAARLFEESLK 260
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G+ + +L F L + L P+ +L + G
Sbjct: 261 LLQTGNGLNTYWMLRDFNLFQQLFPVLTPFLTEEG 295
>gi|429210140|ref|ZP_19201307.1| poly(A) polymerase [Pseudomonas sp. M1]
gi|428158914|gb|EKX05460.1| poly(A) polymerase [Pseudomonas sp. M1]
Length = 467
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 142/335 (42%), Gaps = 60/335 (17%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFS-------- 52
+L PKDFD+ TSA ++V F ++G+RF + HVHF I+EV++F
Sbjct: 67 LLGIAPKDFDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRAHHPQEEG 126
Query: 53 ---------TSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
R RD Y G E D R RDFTIN L FD + I
Sbjct: 127 EGDSNQASRNEAGRILRDNVY------GTLEDDAQR------RDFTINALYFDCSDERIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ DIR V+ + + ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYAHGVHDIRNRLVRLIGDPEQRYLEDPVRMLRAVRFAAKLDFEIEKHSAAPIRKLAPLL 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
++ RL E+ + G E + LL ++ L L P A L R + L+
Sbjct: 235 REIPSARLFDEVLKLFLSGRGERTFELLLEYELFAPLFPASAKALA----RDPEYTGKLI 290
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAIL-------------------AFHKALSDQ 258
+N D + +P + LW A+ A H+ +S+Q
Sbjct: 291 RQALANTDLRIHQGKPVTPAFLFAALLWPALPARVAQLQERGMPPIPAMQEAAHELISEQ 350
Query: 259 PRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHD 293
+ V F++ + DM E ++ RR K D
Sbjct: 351 CQRTAVPKRFTIPIREIWDMQE--RLPRRQGKRAD 383
>gi|134280312|ref|ZP_01767023.1| poly(A) polymerase [Burkholderia pseudomallei 305]
gi|134248319|gb|EBA48402.1| poly(A) polymerase [Burkholderia pseudomallei 305]
Length = 515
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 98 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 157
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 158 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 213
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF ++T +K
Sbjct: 214 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEKKTREPIK 273
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 274 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 309
>gi|384259533|ref|YP_005403467.1| poly(A) polymerase I [Rahnella aquatilis HX2]
gi|380755509|gb|AFE59900.1| poly(A) polymerase I [Rahnella aquatilis HX2]
Length = 531
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 131/269 (48%), Gaps = 14/269 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRF-- 58
+L++ PKDFDI T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 135 LLDKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQHEE 194
Query: 59 SRDFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+ D + G +D I + +RDFTIN L + + DY GG+ D+
Sbjct: 195 TEDKNVSQQAVNGMLLRDNIFGTIEDDAQRRDFTINSLYYGVADFTVRDYTGGLRDLENG 254
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T ++ED R+LRA+R AA+L + S ETA + L+ + ++ RL E
Sbjct: 255 IIRLIGDPETRYREDPVRMLRAVRFAAKLDMKISPETAEPIPRLATLLQEIPPARLFEES 314
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G + + L ++ L + L P+ A + G ++L+ + N D L
Sbjct: 315 LKLLQAGYGYETYKKLCEYQLFQPLFPLIARQFTEQG---DSPMEHILIQVLKNTDHRLH 371
Query: 236 PDRPCHSS------LWIAILAFHKALSDQ 258
D+ + + LW ++ + L+ +
Sbjct: 372 NDQRVNPAFLFAAMLWYPVIEHAQKLAQE 400
>gi|15640615|ref|NP_230244.1| poly(A) polymerase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121730139|ref|ZP_01682536.1| polyA polymerase [Vibrio cholerae V52]
gi|227080777|ref|YP_002809328.1| polyA polymerase [Vibrio cholerae M66-2]
gi|229509186|ref|ZP_04398671.1| poly(A) polymerase [Vibrio cholerae B33]
gi|229519604|ref|ZP_04409047.1| poly(A) polymerase [Vibrio cholerae RC9]
gi|229608891|ref|YP_002879539.1| poly(A) polymerase [Vibrio cholerae MJ-1236]
gi|254850828|ref|ZP_05240178.1| polyA polymerase [Vibrio cholerae MO10]
gi|255744185|ref|ZP_05418138.1| poly(A) polymerase [Vibrio cholera CIRS 101]
gi|262155757|ref|ZP_06028881.1| poly(A) polymerase [Vibrio cholerae INDRE 91/1]
gi|298500714|ref|ZP_07010517.1| polyA polymerase [Vibrio cholerae MAK 757]
gi|360034410|ref|YP_004936173.1| polyA polymerase [Vibrio cholerae O1 str. 2010EL-1786]
gi|379740456|ref|YP_005332425.1| poly(A) polymerase [Vibrio cholerae IEC224]
gi|417812559|ref|ZP_12459219.1| poly(A) polymerase [Vibrio cholerae HC-49A2]
gi|417815421|ref|ZP_12462055.1| poly(A) polymerase [Vibrio cholerae HCUF01]
gi|418331565|ref|ZP_12942507.1| poly(A) polymerase [Vibrio cholerae HC-06A1]
gi|418336440|ref|ZP_12945339.1| poly(A) polymerase [Vibrio cholerae HC-23A1]
gi|418342822|ref|ZP_12949618.1| poly(A) polymerase [Vibrio cholerae HC-28A1]
gi|418347983|ref|ZP_12952719.1| poly(A) polymerase [Vibrio cholerae HC-43A1]
gi|419825065|ref|ZP_14348571.1| poly(A) polymerase family protein [Vibrio cholerae CP1033(6)]
gi|421315777|ref|ZP_15766349.1| poly(A) polymerase [Vibrio cholerae CP1032(5)]
gi|421319364|ref|ZP_15769923.1| poly(A) polymerase [Vibrio cholerae CP1038(11)]
gi|421323411|ref|ZP_15773940.1| poly(A) polymerase [Vibrio cholerae CP1041(14)]
gi|421327816|ref|ZP_15778332.1| poly(A) polymerase [Vibrio cholerae CP1042(15)]
gi|421330823|ref|ZP_15781305.1| poly(A) polymerase [Vibrio cholerae CP1046(19)]
gi|421338301|ref|ZP_15788739.1| poly(A) polymerase [Vibrio cholerae HC-20A2]
gi|421346634|ref|ZP_15797017.1| poly(A) polymerase [Vibrio cholerae HC-46A1]
gi|422890635|ref|ZP_16933050.1| poly(A) polymerase [Vibrio cholerae HC-40A1]
gi|422901504|ref|ZP_16936869.1| poly(A) polymerase [Vibrio cholerae HC-48A1]
gi|422905722|ref|ZP_16940569.1| poly(A) polymerase [Vibrio cholerae HC-70A1]
gi|422912321|ref|ZP_16946848.1| poly(A) polymerase [Vibrio cholerae HFU-02]
gi|422924803|ref|ZP_16957834.1| poly(A) polymerase [Vibrio cholerae HC-38A1]
gi|423144124|ref|ZP_17131739.1| poly(A) polymerase [Vibrio cholerae HC-19A1]
gi|423148828|ref|ZP_17136188.1| poly(A) polymerase [Vibrio cholerae HC-21A1]
gi|423152619|ref|ZP_17139818.1| poly(A) polymerase [Vibrio cholerae HC-22A1]
gi|423155401|ref|ZP_17142538.1| poly(A) polymerase [Vibrio cholerae HC-32A1]
gi|423163947|ref|ZP_17150736.1| poly(A) polymerase [Vibrio cholerae HC-48B2]
gi|423730074|ref|ZP_17703393.1| poly(A) polymerase family protein [Vibrio cholerae HC-17A1]
gi|423748129|ref|ZP_17711473.1| poly(A) polymerase family protein [Vibrio cholerae HC-50A2]
gi|423891796|ref|ZP_17725484.1| poly(A) polymerase family protein [Vibrio cholerae HC-62A1]
gi|423926570|ref|ZP_17730099.1| poly(A) polymerase family protein [Vibrio cholerae HC-77A1]
gi|424001126|ref|ZP_17744216.1| poly(A) polymerase [Vibrio cholerae HC-17A2]
gi|424005285|ref|ZP_17748270.1| poly(A) polymerase [Vibrio cholerae HC-37A1]
gi|424023294|ref|ZP_17762959.1| poly(A) polymerase [Vibrio cholerae HC-62B1]
gi|424026097|ref|ZP_17765714.1| poly(A) polymerase [Vibrio cholerae HC-69A1]
gi|424585501|ref|ZP_18025095.1| poly(A) polymerase [Vibrio cholerae CP1030(3)]
gi|424594119|ref|ZP_18033458.1| poly(A) polymerase [Vibrio cholerae CP1040(13)]
gi|424598060|ref|ZP_18037258.1| poly(A) polymerase [Vibrio Cholerae CP1044(17)]
gi|424600817|ref|ZP_18039974.1| poly(A) polymerase [Vibrio cholerae CP1047(20)]
gi|424605712|ref|ZP_18044678.1| poly(A) polymerase [Vibrio cholerae CP1050(23)]
gi|424609549|ref|ZP_18048408.1| poly(A) polymerase [Vibrio cholerae HC-39A1]
gi|424612351|ref|ZP_18051159.1| poly(A) polymerase [Vibrio cholerae HC-41A1]
gi|424616226|ref|ZP_18054918.1| poly(A) polymerase [Vibrio cholerae HC-42A1]
gi|424621106|ref|ZP_18059635.1| poly(A) polymerase [Vibrio cholerae HC-47A1]
gi|424644084|ref|ZP_18081839.1| poly(A) polymerase [Vibrio cholerae HC-56A2]
gi|424651729|ref|ZP_18089254.1| poly(A) polymerase [Vibrio cholerae HC-57A2]
gi|424655676|ref|ZP_18092979.1| poly(A) polymerase [Vibrio cholerae HC-81A2]
gi|440708801|ref|ZP_20889461.1| poly(A) polymerase [Vibrio cholerae 4260B]
gi|443502625|ref|ZP_21069615.1| poly(A) polymerase [Vibrio cholerae HC-64A1]
gi|443506538|ref|ZP_21073329.1| poly(A) polymerase [Vibrio cholerae HC-65A1]
gi|443510645|ref|ZP_21077310.1| poly(A) polymerase [Vibrio cholerae HC-67A1]
gi|443514205|ref|ZP_21080745.1| poly(A) polymerase [Vibrio cholerae HC-68A1]
gi|443518020|ref|ZP_21084438.1| poly(A) polymerase [Vibrio cholerae HC-71A1]
gi|443522886|ref|ZP_21089127.1| poly(A) polymerase [Vibrio cholerae HC-72A2]
gi|443530504|ref|ZP_21096520.1| poly(A) polymerase [Vibrio cholerae HC-7A1]
gi|443534278|ref|ZP_21100192.1| poly(A) polymerase [Vibrio cholerae HC-80A1]
gi|443537856|ref|ZP_21103713.1| poly(A) polymerase [Vibrio cholerae HC-81A1]
gi|449054181|ref|ZP_21732849.1| Poly(A) polymerase [Vibrio cholerae O1 str. Inaba G4222]
gi|9655025|gb|AAF93761.1| polyA polymerase [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121628115|gb|EAX60652.1| polyA polymerase [Vibrio cholerae V52]
gi|227008665|gb|ACP04877.1| polyA polymerase [Vibrio cholerae M66-2]
gi|229344293|gb|EEO09268.1| poly(A) polymerase [Vibrio cholerae RC9]
gi|229353758|gb|EEO18694.1| poly(A) polymerase [Vibrio cholerae B33]
gi|229371546|gb|ACQ61969.1| poly(A) polymerase [Vibrio cholerae MJ-1236]
gi|254846533|gb|EET24947.1| polyA polymerase [Vibrio cholerae MO10]
gi|255738125|gb|EET93517.1| poly(A) polymerase [Vibrio cholera CIRS 101]
gi|262030468|gb|EEY49108.1| poly(A) polymerase [Vibrio cholerae INDRE 91/1]
gi|297540495|gb|EFH76553.1| polyA polymerase [Vibrio cholerae MAK 757]
gi|340043407|gb|EGR04366.1| poly(A) polymerase [Vibrio cholerae HCUF01]
gi|340043939|gb|EGR04896.1| poly(A) polymerase [Vibrio cholerae HC-49A2]
gi|341625175|gb|EGS50640.1| poly(A) polymerase [Vibrio cholerae HC-70A1]
gi|341626290|gb|EGS51685.1| poly(A) polymerase [Vibrio cholerae HC-48A1]
gi|341626946|gb|EGS52281.1| poly(A) polymerase [Vibrio cholerae HC-40A1]
gi|341640887|gb|EGS65462.1| poly(A) polymerase [Vibrio cholerae HFU-02]
gi|341648430|gb|EGS72490.1| poly(A) polymerase [Vibrio cholerae HC-38A1]
gi|356420592|gb|EHH74111.1| poly(A) polymerase [Vibrio cholerae HC-06A1]
gi|356421452|gb|EHH74953.1| poly(A) polymerase [Vibrio cholerae HC-21A1]
gi|356426075|gb|EHH79409.1| poly(A) polymerase [Vibrio cholerae HC-19A1]
gi|356433221|gb|EHH86414.1| poly(A) polymerase [Vibrio cholerae HC-23A1]
gi|356434402|gb|EHH87581.1| poly(A) polymerase [Vibrio cholerae HC-22A1]
gi|356437867|gb|EHH90938.1| poly(A) polymerase [Vibrio cholerae HC-28A1]
gi|356443068|gb|EHH95900.1| poly(A) polymerase [Vibrio cholerae HC-32A1]
gi|356448094|gb|EHI00879.1| poly(A) polymerase [Vibrio cholerae HC-43A1]
gi|356456354|gb|EHI08961.1| poly(A) polymerase [Vibrio cholerae HC-48B2]
gi|356645564|gb|AET25619.1| polyA polymerase [Vibrio cholerae O1 str. 2010EL-1786]
gi|378793966|gb|AFC57437.1| poly(A) polymerase [Vibrio cholerae IEC224]
gi|395922518|gb|EJH33334.1| poly(A) polymerase [Vibrio cholerae CP1032(5)]
gi|395923256|gb|EJH34068.1| poly(A) polymerase [Vibrio cholerae CP1041(14)]
gi|395925689|gb|EJH36486.1| poly(A) polymerase [Vibrio cholerae CP1038(11)]
gi|395931550|gb|EJH42295.1| poly(A) polymerase [Vibrio cholerae CP1042(15)]
gi|395934676|gb|EJH45414.1| poly(A) polymerase [Vibrio cholerae CP1046(19)]
gi|395945421|gb|EJH56087.1| poly(A) polymerase [Vibrio cholerae HC-20A2]
gi|395946782|gb|EJH57442.1| poly(A) polymerase [Vibrio cholerae HC-46A1]
gi|395962738|gb|EJH73030.1| poly(A) polymerase [Vibrio cholerae HC-56A2]
gi|395963888|gb|EJH74140.1| poly(A) polymerase [Vibrio cholerae HC-57A2]
gi|395966717|gb|EJH76832.1| poly(A) polymerase [Vibrio cholerae HC-42A1]
gi|395974902|gb|EJH84412.1| poly(A) polymerase [Vibrio cholerae HC-47A1]
gi|395977644|gb|EJH87049.1| poly(A) polymerase [Vibrio cholerae CP1030(3)]
gi|395979037|gb|EJH88401.1| poly(A) polymerase [Vibrio cholerae CP1047(20)]
gi|408009635|gb|EKG47535.1| poly(A) polymerase [Vibrio cholerae HC-39A1]
gi|408016493|gb|EKG54037.1| poly(A) polymerase [Vibrio cholerae HC-41A1]
gi|408037097|gb|EKG73503.1| poly(A) polymerase [Vibrio cholerae CP1040(13)]
gi|408044652|gb|EKG80548.1| poly(A) polymerase [Vibrio Cholerae CP1044(17)]
gi|408046609|gb|EKG82285.1| poly(A) polymerase [Vibrio cholerae CP1050(23)]
gi|408057282|gb|EKG92139.1| poly(A) polymerase [Vibrio cholerae HC-81A2]
gi|408611336|gb|EKK84697.1| poly(A) polymerase family protein [Vibrio cholerae CP1033(6)]
gi|408627285|gb|EKL00101.1| poly(A) polymerase family protein [Vibrio cholerae HC-17A1]
gi|408641326|gb|EKL13106.1| poly(A) polymerase family protein [Vibrio cholerae HC-50A2]
gi|408658639|gb|EKL29705.1| poly(A) polymerase family protein [Vibrio cholerae HC-77A1]
gi|408659300|gb|EKL30351.1| poly(A) polymerase family protein [Vibrio cholerae HC-62A1]
gi|408848300|gb|EKL88349.1| poly(A) polymerase [Vibrio cholerae HC-37A1]
gi|408849269|gb|EKL89296.1| poly(A) polymerase [Vibrio cholerae HC-17A2]
gi|408873575|gb|EKM12772.1| poly(A) polymerase [Vibrio cholerae HC-62B1]
gi|408881256|gb|EKM20160.1| poly(A) polymerase [Vibrio cholerae HC-69A1]
gi|439975542|gb|ELP51654.1| poly(A) polymerase [Vibrio cholerae 4260B]
gi|443433016|gb|ELS75536.1| poly(A) polymerase [Vibrio cholerae HC-64A1]
gi|443436804|gb|ELS82920.1| poly(A) polymerase [Vibrio cholerae HC-65A1]
gi|443440367|gb|ELS90055.1| poly(A) polymerase [Vibrio cholerae HC-67A1]
gi|443444462|gb|ELS97735.1| poly(A) polymerase [Vibrio cholerae HC-68A1]
gi|443448298|gb|ELT04932.1| poly(A) polymerase [Vibrio cholerae HC-71A1]
gi|443451072|gb|ELT11335.1| poly(A) polymerase [Vibrio cholerae HC-72A2]
gi|443458705|gb|ELT26100.1| poly(A) polymerase [Vibrio cholerae HC-7A1]
gi|443462585|gb|ELT33622.1| poly(A) polymerase [Vibrio cholerae HC-80A1]
gi|443466681|gb|ELT41338.1| poly(A) polymerase [Vibrio cholerae HC-81A1]
gi|448266336|gb|EMB03563.1| Poly(A) polymerase [Vibrio cholerae O1 str. Inaba G4222]
Length = 457
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|258544970|ref|ZP_05705204.1| poly(A) polymerase [Cardiobacterium hominis ATCC 15826]
gi|258519773|gb|EEV88632.1| poly(A) polymerase [Cardiobacterium hominis ATCC 15826]
Length = 444
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 119/252 (47%), Gaps = 9/252 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ +F C ++G+RF + H+HF I+EV++F R +R
Sbjct: 52 LLGKQPKDFDIATNARPEQIASIFRNCRLIGRRFRLAHIHFGRYIIEVATFRAPPEREAR 111
Query: 61 DFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
Y + G E D +R RDFTIN L +D I DY+G ++DI + +
Sbjct: 112 TDSYGSVLEDNHYGTLEDDVVR------RDFTINALYYDSKNDEIRDYVGALDDINRRII 165
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + + ED R+LRA R +A+L +T + ++ + RL E+
Sbjct: 166 RIIGDPVARYTEDPVRMLRAARFSAKLNMPLEADTEAAIVACRDNLRAVPAARLFDEVQK 225
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G + +L + GL E L P + N++ +N D+ +A D
Sbjct: 226 LFMSGYGQTCFDVLQQHGLFEALFPDAEKTIHYPHAAYAQYAKNMMRIALANTDERIAAD 285
Query: 238 RPCHSSLWIAIL 249
+P + +A +
Sbjct: 286 KPVTIAFLLAAI 297
>gi|383191550|ref|YP_005201678.1| poly(A) polymerase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
gi|371589808|gb|AEX53538.1| poly(A) polymerase [Rahnella aquatilis CIP 78.65 = ATCC 33071]
Length = 571
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 131/275 (47%), Gaps = 26/275 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 175 LLDKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQHEE 234
Query: 61 -DFKYEFERPI----------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
D K ++ + G E D R RDFTIN L + + DY GG+
Sbjct: 235 TDDKNVSQQAVNGMLLRDNIFGTIEDDAQR------RDFTINSLYYGVADFTVRDYTGGL 288
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
D+ ++ + T ++ED R+LRA+R AA+L + S ETA + L+ + ++
Sbjct: 289 RDLENGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMKISPETAGPIPRLATLLQEIPPA 348
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSN 229
RL E +L G + + L ++ L + L P+ A + G ++LL + N
Sbjct: 349 RLFEESLKLLQAGYGLETYKKLCEYQLFQPLFPLIARQFTEQG---DSPMEHILLQVLKN 405
Query: 230 LDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
D L D+ + + LW ++ + L+ +
Sbjct: 406 TDHRLHNDQRVNPAFLFAAMLWYPVIEHAQKLAQE 440
>gi|335042334|ref|ZP_08535361.1| tRNA nucleotidyltransferase/poly polymerase [Methylophaga
aminisulfidivorans MP]
gi|333788948|gb|EGL54830.1| tRNA nucleotidyltransferase/poly polymerase [Methylophaga
aminisulfidivorans MP]
Length = 403
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/269 (31%), Positives = 132/269 (49%), Gaps = 45/269 (16%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T+A ++V ++F + +++G+RF + HV F ++EV++F
Sbjct: 19 LLGYEPKDFDVATNASPEQVHKLFKRSQLIGRRFKLVHVRFGREVIEVATFRAPPEAKQH 78
Query: 52 -STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
T GR +D Y G E+D WR RDFTIN L ++ I DY GG+
Sbjct: 79 VDTQGR-IMQDNVY------GTLEQD--AWR----RDFTINALYYNIKDFSIIDYTGGMA 125
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRET-------AHFVKHLSPSI 163
D+ ++ + T ++ED R+LRA R A+LG + ++T AH ++ + P+
Sbjct: 126 DLNAGLIRLIGDVETRYREDPVRMLRACRFLAKLGLKLDKQTEQGIFDWAHLIRDIPPA- 184
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL--VKHGFRRRDKRSN 221
RL E + G A + LL +GL E L P AA L + G+ R
Sbjct: 185 ------RLFDETLKLYLSGQAGMTHDLLCHYGLFEHLYPQTAALLHEEQDGYPR-----T 233
Query: 222 LLLSLFSNLDKLLAPDRPCHSS-LWIAIL 249
+L+ N D +A D+P + L+ AIL
Sbjct: 234 MLMKALENTDIRIAADKPVTPAFLFAAIL 262
>gi|254784780|ref|YP_003072208.1| poly(A) polymerase [Teredinibacter turnerae T7901]
gi|237686559|gb|ACR13823.1| putative poly(A) polymerase [Teredinibacter turnerae T7901]
Length = 463
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 143/283 (50%), Gaps = 28/283 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ TSA +++ +F I+GKRF I HV F I+EV++F + +
Sbjct: 70 LLGGKPKDFDVATSATPEQLRGIFRNARIIGKRFQIVHVRFGREIIEVTTFRDN-HAVAD 128
Query: 61 DFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D + + G +D + + +RDFT+N L ++P ++ + ++ G+ED+ +
Sbjct: 129 DNQQAKQSEHGVLLRDNVYGNLKTDAERRDFTVNALYYNPRSRELLEFSTGLEDLNDRVI 188
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFS-------RETAHFVKHLSPSILKLDRGR 170
+ V T ++ED R+LRA+R AA+LGF RE A ++ H+ P+ R
Sbjct: 189 RIVGDPQTRYREDPVRLLRAVRFAAKLGFTIEPVTEAPIREHADYLTHIPPA-------R 241
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L E+ + GSA A++ LL ++ L + L P + +++G R+ ++++ +N
Sbjct: 242 LFEEVLKLFMSGSATATVNLLREYHLFKYLFP-DTDFCMENG---REPDRAMVMNAAANT 297
Query: 231 DKLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAV 267
DK + + + LW A+ A + L+ + P A+
Sbjct: 298 DKRIRQGKKVTPAFIYAAFLWPALRASMRHLAKEQNLPTQEAM 340
>gi|322834354|ref|YP_004214381.1| poly(A) polymerase [Rahnella sp. Y9602]
gi|321169555|gb|ADW75254.1| poly(A) polymerase [Rahnella sp. Y9602]
Length = 568
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 131/269 (48%), Gaps = 14/269 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRF-- 58
+L++ PKDFDI T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 172 LLDKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQHEE 231
Query: 59 SRDFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+ D + G +D I + +RDFTIN L + + DY GG+ D+
Sbjct: 232 TEDKNVSQQAVNGMLLRDNIFGTIEDDAQRRDFTINSLYYGVADFTVRDYTGGLRDLENG 291
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T ++ED R+LRA+R AA+L + S ETA + L+ + ++ RL E
Sbjct: 292 IIRLIGDPETRYREDPVRMLRAVRFAAKLDMKISPETAEPIPRLATLLQEIPPARLFEES 351
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G + + L ++ L + L P+ A + G ++L+ + N D L
Sbjct: 352 LKLLQAGYGYETYKKLCEYQLFQPLFPLIARQFTEQG---DSPMEHILIQVLKNTDHRLH 408
Query: 236 PDRPCHSS------LWIAILAFHKALSDQ 258
D+ + + LW ++ + L+ +
Sbjct: 409 NDQRVNPAFLFAAMLWYPVIEHAQKLAQE 437
>gi|94500957|ref|ZP_01307482.1| tRNA nucleotidyltransferase/poly(A) polymerase [Bermanella
marisrubri]
gi|94426897|gb|EAT11880.1| tRNA nucleotidyltransferase/poly(A) polymerase [Oceanobacter sp.
RED65]
Length = 445
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 129/267 (48%), Gaps = 25/267 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSGRRFSR 60
PKDFD++T A +EV ++F I+G+RF + HV F ++EV++F + G+ S+
Sbjct: 69 PKDFDVVTDASPEEVHKLFKNSRIIGRRFRLVHVTFGRDMIEVATFRGDHGNAEGKHQSK 128
Query: 61 DFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ + G ++D +R RDFTIN L ++ + Y GGI+DI ++
Sbjct: 129 TNEAGMLLRDNVYGSIDEDAMR------RDFTINALYYNIADFSVKSYAGGIDDIHAKRL 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA R AA+LGF + + +K L+P + + RL E+
Sbjct: 183 RLIGDPETRYREDPVRMLRAARFAAKLGFSIDKSSKAPIKELAPLLRDIPPARLFEEVLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G A+A+ L GL E L P + + F R +++ +N D +A
Sbjct: 243 LFMAGYAKATFEQLQALGLFEPLFPHTQQCIDDNKFYRL-----MVMHALNNSDARVAQG 297
Query: 238 RPCHSS------LWIAILAFHKALSDQ 258
+ + LW +L K L Q
Sbjct: 298 KSLTPAFLFSVFLWPCVLETAKLLQQQ 324
>gi|121591044|ref|ZP_01678360.1| polyA polymerase [Vibrio cholerae 2740-80]
gi|121547115|gb|EAX57248.1| polyA polymerase [Vibrio cholerae 2740-80]
Length = 420
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 26 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 85
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 86 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 145
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+P + + RL E
Sbjct: 146 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 205
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 206 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 237
>gi|153216761|ref|ZP_01950601.1| poly(A) polymerase [Vibrio cholerae 1587]
gi|124114149|gb|EAY32969.1| poly(A) polymerase [Vibrio cholerae 1587]
Length = 417
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 23 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 82
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 83 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 142
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+P + + RL E
Sbjct: 143 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 202
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 203 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 234
>gi|418354436|ref|ZP_12957160.1| poly(A) polymerase [Vibrio cholerae HC-61A1]
gi|421334405|ref|ZP_15784874.1| poly(A) polymerase [Vibrio cholerae CP1048(21)]
gi|423159263|ref|ZP_17146236.1| poly(A) polymerase [Vibrio cholerae HC-33A2]
gi|424658464|ref|ZP_18095721.1| poly(A) polymerase [Vibrio cholerae HE-16]
gi|356450100|gb|EHI02832.1| poly(A) polymerase [Vibrio cholerae HC-33A2]
gi|356454212|gb|EHI06867.1| poly(A) polymerase [Vibrio cholerae HC-61A1]
gi|395937514|gb|EJH48228.1| poly(A) polymerase [Vibrio cholerae CP1048(21)]
gi|408054948|gb|EKG89902.1| poly(A) polymerase [Vibrio cholerae HE-16]
Length = 439
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 45 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 104
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 105 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 164
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+P + + RL E
Sbjct: 165 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 224
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 225 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 256
>gi|146310347|ref|YP_001175421.1| poly(A) polymerase [Enterobacter sp. 638]
gi|145317223|gb|ABP59370.1| poly(A) polymerase [Enterobacter sp. 638]
Length = 437
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 132/267 (49%), Gaps = 23/267 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + PKDFD+ TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 45 LLGQKPKDFDVTTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEAGAP 104
Query: 52 ---STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
+TS R ++ + G E+D R RDFTIN L + + D++GG
Sbjct: 105 ADRTTSQR--GQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFSVRDFVGG 156
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
++D+++ ++ + T ++ED R+LRA+R AA+L + S ETA + L+ I +
Sbjct: 157 VQDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMQISAETAEPIPRLATLINDVPP 216
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E+ +L G + +LL + L + L P Y + G ++ ++ +
Sbjct: 217 ARLFEEVLKLLQAGYGYETYKLLRENSLFQPLFPSIVRYFTESGDSPMER---MIAQVLK 273
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKAL 255
N D L D + + A + ++ L
Sbjct: 274 NTDTRLHNDMRVNPAFLFAAMFWYPLL 300
>gi|332298021|ref|YP_004439943.1| poly(A) polymerase [Treponema brennaborense DSM 12168]
gi|332181124|gb|AEE16812.1| poly(A) polymerase [Treponema brennaborense DSM 12168]
Length = 426
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 29/216 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
++++ PKDFDI+T A + ++F I+G+RF + HV F I EVS+F S +
Sbjct: 61 LVDKDPKDFDIVTDAPPPRIKKIFRNSRIIGRRFRLVHVFFGPKIFEVSTFRSITDGSVG 120
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F G ++D R RDFT+N L +DP + I DY+GG++DIRK ++
Sbjct: 121 NSF--------GSMDEDVQR------RDFTLNALYYDPVREQIVDYVGGVKDIRKGVIRP 166
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFS-------RETAHFVKHLSPSILKLDRGRLL 172
VIP F+ED R+LRA++ AA G + R++AH + +SPS RL
Sbjct: 167 VIPIERIFEEDPVRMLRAVKYAATTGCKLPGYLKRKIRKSAHLLSPVSPS-------RLT 219
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
E+ ++ G A ++ + L L P A +
Sbjct: 220 EELMKIINSGHAYDIVKFSLEVDLYMYLQPAATAMM 255
>gi|283783928|ref|YP_003363793.1| poly(A) polymerase [Citrobacter rodentium ICC168]
gi|282947382|emb|CBG86927.1| poly(A) polymerase [Citrobacter rodentium ICC168]
Length = 472
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 149/314 (47%), Gaps = 29/314 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F S S
Sbjct: 80 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSES 139
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 140 DRTTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 193
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + + RL
Sbjct: 194 LQDGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPETAEPIPRLATLLNDIPPARL 253
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + L ++ L + L P Y ++G ++ ++ + N D
Sbjct: 254 FEESLKLLQSGYGYETYLKLREYSLFQPLFPTITRYFTENGDSPMER---IIAQVLKNTD 310
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
+ D + + A + ++ PL+ +A +G +A +A +N+
Sbjct: 311 NRIHNDMRVNPAFLFAAMFWY---------PLLEMAQKIAQESGLAYYDAFALA--MNEV 359
Query: 292 HDESFCELLEPRDL 305
DE+ L P+ L
Sbjct: 360 LDEACRSLAIPKRL 373
>gi|325971159|ref|YP_004247350.1| poly(A) polymerase [Sphaerochaeta globus str. Buddy]
gi|324026397|gb|ADY13156.1| poly(A) polymerase [Sphaerochaeta globus str. Buddy]
Length = 422
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 11/207 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
ML IPKDFDI TSA +++ R+F I+GKRF + H+ F++ ++EVS+F +
Sbjct: 61 MLGTIPKDFDIATSASPRQIQRLFWNARIIGKRFKLVHLVFKDKVLEVSTFRSGEEAMDG 120
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
+ G ++D R RDF+IN +DP + D+ +ED +K K+ ++
Sbjct: 121 NNNV-----FGSIDQDAKR------RDFSINSFYYDPSTGQLLDFNHAMEDFKKKKISSI 169
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
I SF+ED R++RAI+ + GF ++ S + ++ RL E+N +LA
Sbjct: 170 IDLDESFKEDPVRMVRAIKYSVSTGFSLRWSVKMAIRKYSNELSRVSTSRLTEEVNKILA 229
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAY 207
G + L ++ LL +LP + Y
Sbjct: 230 SGHSCEIFNELKRYKLLVFMLPAFSIY 256
>gi|387770794|ref|ZP_10126969.1| polynucleotide adenylyltransferase [Pasteurella bettyae CCUG 2042]
gi|386903544|gb|EIJ68354.1| polynucleotide adenylyltransferase [Pasteurella bettyae CCUG 2042]
Length = 450
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 13/218 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+LN+ PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + +
Sbjct: 54 LLNKNPKDFDVATNARPEQIQAIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRANHTNIA 113
Query: 60 RDFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ + DE +R ++ +RDFT+N L + P +I+DY GIED+
Sbjct: 114 NENASK-----QSDEGMLLRDNVYGTLEQDAERRDFTVNALYYSPKDNLIFDYFNGIEDL 168
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
+ K++ + T +QED R+LRAIR A+L + + + L+ + + RL
Sbjct: 169 KSGKLRLIGDPVTRYQEDPVRMLRAIRFMAKLDMFLDKPSEKPIHELAYLLKNIPPARLF 228
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + +LL ++ L E L P Y +
Sbjct: 229 DESLKLLQCGFGVKTYKLLREYHLFEQLFPALMPYFTE 266
>gi|422336238|ref|ZP_16417211.1| poly(A) polymerase [Aggregatibacter aphrophilus F0387]
gi|353346424|gb|EHB90709.1| poly(A) polymerase [Aggregatibacter aphrophilus F0387]
Length = 421
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 116/215 (53%), Gaps = 5/215 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S
Sbjct: 31 LLGKKPKDFDVATNARPEQIQAIFQRQCRLVGRRFRLAHIMFGREIIEVATFRANHAE-S 89
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K+ + G +D + ++ +RDF++N L ++P + D+ GIED++ K
Sbjct: 90 HNEKHAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDFFNGIEDLKNGK 149
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K L+ + + RL E
Sbjct: 150 LRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLDKPSEMPIKELAHLLKNIPPARLFEESL 209
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
+L G + LL ++GL E L P+ + Y ++
Sbjct: 210 KLLQAGYGVKTYWLLRQYGLFEQLFPLLSKYFTEY 244
>gi|451823269|ref|YP_007459543.1| poly(A) polymerase [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
gi|451776069|gb|AGF47110.1| poly(A) polymerase [Candidatus Kinetoplastibacterium desouzaii
TCC079E]
Length = 430
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 131/266 (49%), Gaps = 20/266 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFDI T+A+ ++V +F + I+GKRF I HV F ++E+S+F +S +
Sbjct: 67 PKDFDIATNAKPEQVKALFRRAYIIGKRFKIVHVKFGQELIEISTFRSSSLEKDEHGRIL 126
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
+ G E+D R RDFTIN L ++P + I D+ GI+D+R V+ +
Sbjct: 127 KDNSFGTQEEDVAR------RDFTINSLYYNPINEEIIDFYNGIKDLRNRNVKIIGNPEE 180
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAE 185
++ED R+LRA+R A+++ ++++ + L I + + RL E +L G+A
Sbjct: 181 RYREDPVRMLRAVRFASKINGTIEEQSSNGINKLKDLIKNVPQARLFDETIKILTCGNAL 240
Query: 186 ASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLLAPDRPCHSS- 243
L+ L LL+ LLP L D+ S L L SN D ++ D+ S
Sbjct: 241 DCLKKLNSKKLLDNLLPSLPKTL-------EDQSSISFLGLALSNTDSRISKDKNISPSF 293
Query: 244 -----LWIAILAFHKALSDQPRDPLV 264
LW I +K L ++ +P +
Sbjct: 294 LLAVILWNPIKILYKKLLEEENNPFI 319
>gi|422349952|ref|ZP_16430840.1| poly(A) polymerase [Sutterella wadsworthensis 2_1_59BFAA]
gi|404657801|gb|EKB30683.1| poly(A) polymerase [Sutterella wadsworthensis 2_1_59BFAA]
Length = 479
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 9/206 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST---SGRR 57
ML PKDFD+ T A ++V R + I+G+RF + HV F ++E S+F +G+R
Sbjct: 67 MLGVTPKDFDVATDATPEQVKRCQRRAVIIGRRFKLVHVIFGREVIECSTFRALEGAGQR 126
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ + G W + +RDFTIN L +DP + ++DY G ED+ ++
Sbjct: 127 KDATGRVVSDNVFGE------MWEDAARRDFTINALYYDPQTQELFDYHRGFEDLAAKRL 180
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + + ++ED R++RA+RIAA+LGF T + ++ + + RL+ E+
Sbjct: 181 RMIGDPAERYREDPVRMMRAVRIAAKLGFTIEPATEAPIPKMAKLLENVPSARLVDEVLK 240
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPI 203
+L G A A L L + GL + LLP+
Sbjct: 241 LLTSGHAVACLSKLRQEGLHKALLPL 266
>gi|269966964|ref|ZP_06181036.1| Poly(A) polymerase [Vibrio alginolyticus 40B]
gi|269828447|gb|EEZ82709.1| Poly(A) polymerase [Vibrio alginolyticus 40B]
Length = 455
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 114/219 (52%), Gaps = 16/219 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 65 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGH------ 118
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
+ + + I K+ + R+ + +RDFTIN + ++ I+DY GIED
Sbjct: 119 -HQEQKNKSISQQSKEGMLLRDNVYGTIDEDAERRDFTINSMYYNIADYSIHDYARGIED 177
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + T ++ED R+LRA+R A +L F +TA ++H++P + + RL
Sbjct: 178 LEDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEHMAPLLGDIPSARL 237
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + LL ++ L + L P AA+ +
Sbjct: 238 FEESLKLLQSGHGLETYHLLREYNLFQQLFPTIAAHFTE 276
>gi|251792689|ref|YP_003007415.1| poly(A) polymerase [Aggregatibacter aphrophilus NJ8700]
gi|247534082|gb|ACS97328.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Aggregatibacter aphrophilus NJ8700]
Length = 421
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 116/215 (53%), Gaps = 5/215 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F I+EV++F + S
Sbjct: 31 LLGKKPKDFDVATNARPEQIQAIFQRQCRLVGRRFRLAHIMFGREIIEVATFRANHAE-S 89
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K+ + G +D + ++ +RDF++N L ++P + D+ GIED++ K
Sbjct: 90 HNEKHAKQSEEGMLLRDNVYGTLEQDAERRDFSVNALYYNPQDNTLKDFFNGIEDLKNGK 149
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + T +QED R+LR+IR A+L + + +K L+ + + RL E
Sbjct: 150 LRLIGDPVTRYQEDPVRMLRSIRFMAKLDMFLDKPSEMPIKELAHLLKNIPPARLFEESL 209
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
+L G + LL ++GL E L P+ + Y ++
Sbjct: 210 KLLQAGYGVKTYWLLRQYGLFEQLFPLLSKYFTEY 244
>gi|147673822|ref|YP_001216090.1| polyA polymerase [Vibrio cholerae O395]
gi|227116970|ref|YP_002818866.1| polyA polymerase [Vibrio cholerae O395]
gi|262169899|ref|ZP_06037589.1| poly(A) polymerase [Vibrio cholerae RC27]
gi|146315705|gb|ABQ20244.1| polyA polymerase [Vibrio cholerae O395]
gi|227012420|gb|ACP08630.1| polyA polymerase [Vibrio cholerae O395]
gi|262021633|gb|EEY40344.1| poly(A) polymerase [Vibrio cholerae RC27]
Length = 457
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNMYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|269138047|ref|YP_003294747.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda
EIB202]
gi|387866778|ref|YP_005698247.1| Poly(A) polymerase [Edwardsiella tarda FL6-60]
gi|267983707|gb|ACY83536.1| tRNA nucleotidyltransferase/poly(A) polymerase [Edwardsiella tarda
EIB202]
gi|304558091|gb|ADM40755.1| Poly(A) polymerase [Edwardsiella tarda FL6-60]
Length = 456
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 127/267 (47%), Gaps = 12/267 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 61 LLGKRPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEHADE 120
Query: 61 DFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN L + + DY GG+ D+R ++
Sbjct: 121 SKNIAQQGKNGMLLRDNVYGNIEEDAQRRDFTINSLYYSVADFSVRDYTGGLNDLRAGQI 180
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + HL+ + + RL E
Sbjct: 181 RLIGDPETRYREDPVRMLRAVRFAAKLQMSISPETAAPIAHLASLLRDIPAARLFEEALK 240
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + L ++ L + L P+ + +G +K +L + N D + D
Sbjct: 241 LLQAGYGYETYLKLREYQLFQPLFPVICRHFTPNGDSPMEK---ILAQVLKNTDHRIQND 297
Query: 238 RPCHSS------LWIAILAFHKALSDQ 258
+ + LW ++ + L+ +
Sbjct: 298 MRVNPAFLFAAMLWYPLIELAQKLTQE 324
>gi|167622692|ref|YP_001672986.1| poly(A) polymerase [Shewanella halifaxensis HAW-EB4]
gi|167352714|gb|ABZ75327.1| poly(A) polymerase [Shewanella halifaxensis HAW-EB4]
Length = 430
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 148/311 (47%), Gaps = 40/311 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD++T+A +E+ R+F C +VG+RF + H+ F ++EV++
Sbjct: 42 LLGLQPKDFDVVTNATPEEIKRLFRNCRLVGRRFRLAHIVFGRDVIEVATLRGHHVDSEE 101
Query: 52 ----STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIG 107
+ R RD Y G ++D R RDFT+N L +D I+ Y G
Sbjct: 102 KISKTNESGRLLRDNVY------GSIDEDAER------RDFTVNALYYDISDFSIHSYGG 149
Query: 108 GIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLD 167
G++D+ ++ + T ++ED R+LRA+R A +L A +K L+ + +
Sbjct: 150 GLQDLESRTIRLIGDPETRYREDPVRMLRAVRFATKLDMTIEANAAKPIKGLARLLKDIP 209
Query: 168 RGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF 227
R+ E+ + G A + ++ +FGL E L P A L ++ + + LL +
Sbjct: 210 AARMYEEVLKLFFAGKALENFHMMREFGLFEPLFPQVEALLKEYP---SGETAKLLQEMM 266
Query: 228 SNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNG-----GDMLE-- 280
++ D+ +A D+P + + A L ++ LS + D + L+ Y+ GD++E
Sbjct: 267 TSTDERVAQDKPVTPAFFYAALLWY-PLSQRADD--IALESGLSTYDAYTAAMGDVMEQQ 323
Query: 281 --AVKIARRIN 289
+ I RR +
Sbjct: 324 CRTISIPRRFS 334
>gi|451975919|ref|ZP_21927095.1| Poly(A) polymerase [Vibrio alginolyticus E0666]
gi|451930136|gb|EMD77854.1| Poly(A) polymerase [Vibrio alginolyticus E0666]
Length = 455
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 114/219 (52%), Gaps = 16/219 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 65 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGH------ 118
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
+ + + I K+ + R+ + +RDFTIN + ++ I+DY GIED
Sbjct: 119 -HQEQKNKSISQQSKEGMLLRDNVYGTIDEDAERRDFTINSMYYNIADYSIHDYARGIED 177
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + T ++ED R+LRA+R A +L F +TA ++H++P + + RL
Sbjct: 178 LEDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEHMAPLLGDIPSARL 237
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + LL ++ L + L P AA+ +
Sbjct: 238 FEESLKLLQSGHGLETYHLLREYNLFQQLFPTIAAHFTE 276
>gi|88810481|ref|ZP_01125738.1| polyA polymerase [Nitrococcus mobilis Nb-231]
gi|88792111|gb|EAR23221.1| polyA polymerase [Nitrococcus mobilis Nb-231]
Length = 475
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 14/215 (6%)
Query: 2 LNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------ST 53
L R PKDFD+ T A ++V ++F C ++G+RF + HV+F + I+EV++F +
Sbjct: 96 LGREPKDFDVATDARPEQVKQLFRNCRLIGRRFRLAHVYFGSEIIEVATFRALQEAGEAD 155
Query: 54 SGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R + + + G E+D L+RDFT+N L + + DY+GG+ D+R
Sbjct: 156 EQARVLENGRLLRDNVFGTIEED------ALRRDFTVNALYYHIADFTLVDYVGGMADLR 209
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + A ++ED R+LRA+R A +LGFR ETA + ++ + + RL
Sbjct: 210 CGVLRLIGAAEVRYREDPVRMLRAVRFAVKLGFRMHPETAEAIPRMAHLLGHIPPARLFD 269
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
E + G + L +GL L P A L
Sbjct: 270 ETLKLFVTGMGLEAFECLRHYGLFGYLFPATEAVL 304
>gi|332308267|ref|YP_004436118.1| poly(A) polymerase [Glaciecola sp. 4H-3-7+YE-5]
gi|332175596|gb|AEE24850.1| poly(A) polymerase [Glaciecola sp. 4H-3-7+YE-5]
Length = 474
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 18/218 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T A ++V +F C ++G+RF + HV F I+EV++F G S+
Sbjct: 75 LLGKKPKDFDVTTDATPEQVKELFRNCRLIGRRFRLAHVVFGREIIEVATFR--GHHPSQ 132
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQ----------------RDFTINGLMFDPYAKIIYD 104
D E ++ ++ + + Q RDFT+N + ++ I+D
Sbjct: 133 DEDKENDKDKDSKGQNLSKQSDHGQLLRDNVFGSIEEDAERRDFTVNAMYYNIADYSIHD 192
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
+ G++ ++ ++ + +T ++ED R+LRA+R + +LG + S ETA + L+P +
Sbjct: 193 FANGMQAVKNRQITMIGDPATRYREDPVRMLRAVRFSVKLGMKISPETAKPIYELAPLMA 252
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
+ RL E+ +L G + +LL +FGL E L P
Sbjct: 253 NIPPARLFEEVLKLLLSGQGLDTYKLLNEFGLFEQLFP 290
>gi|413963557|ref|ZP_11402784.1| poly(A) polymerase [Burkholderia sp. SJ98]
gi|413929389|gb|EKS68677.1| poly(A) polymerase [Burkholderia sp. SJ98]
Length = 525
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 109/221 (49%), Gaps = 19/221 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A +V ++F + I+G+RF I HV F I+E S+F
Sbjct: 98 LLGVAPKDFDVATDATPDQVQKLFRRARIIGRRFQIVHVQFGQEIIETSTFRALMDAPPE 157
Query: 54 ----SGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPYAKII 102
RR R D + G +D + W + +RDFTIN + +DP + +
Sbjct: 158 PSAEPPRRLKRGELDARTHAVDASGRVLRDNV-WGEQHEDATRRDFTINAMYYDPATQTV 216
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
DY G+ DIR ++ + +T ++ED R+LR +R AA+LGF T +K L+
Sbjct: 217 LDYHDGMADIRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIDEATRAPIKDLADL 276
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPI 203
+ + RL EM +L G A A L L + GL +LP+
Sbjct: 277 MNNVPAARLFDEMLKLLLSGHALACLTRLRQEGLHHGVLPL 317
>gi|374314023|ref|YP_005060452.1| poly(A) polymerase I [Serratia symbiotica str. 'Cinara cedri']
gi|363988249|gb|AEW44440.1| poly(A) polymerase I [Serratia symbiotica str. 'Cinara cedri']
Length = 518
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 141/313 (45%), Gaps = 30/313 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ +F C +VG+RF + H+ F I+EV++F + S+
Sbjct: 128 LLGKKPKDFDITTNATPEQIRNLFRNCRLVGRRFRLAHIMFGPEIIEVATFRGHHEQNSQ 187
Query: 61 DFKYEF----------ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
K + G E+D R RDFTIN L ++ + DY+ G+
Sbjct: 188 SDKNSSLLAQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYNVADFRLRDYVDGLR 241
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+++ ++ + T ++ED R+LRA+R AA L + S ETA + L+ + ++ R
Sbjct: 242 DLQQGVIRLIGNPETRYREDPVRMLRAVRFAANLNMQISDETAEPIPQLASLLYEIPPAR 301
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L E +L G + L K+ L ++L PI A Y + L+ N+
Sbjct: 302 LFDESIKLLLTGYGYPAYLKLCKYQLFQLLFPIIARYCTPDNTTLLEA---TLVQTLKNI 358
Query: 231 DKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINK 290
D L + A L + PL+ LA+ N EA IA IN
Sbjct: 359 DHHLQNSIKVTPAFLFASLLWR---------PLLKYAQELALKNSLSYYEAFTIA--IND 407
Query: 291 SHDESFCELLEPR 303
DE C L P+
Sbjct: 408 VLDEQCCVLAIPK 420
>gi|336314060|ref|ZP_08568981.1| poly(A) polymerase [Rheinheimera sp. A13L]
gi|335881573|gb|EGM79451.1| poly(A) polymerase [Rheinheimera sp. A13L]
Length = 480
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/294 (28%), Positives = 141/294 (47%), Gaps = 27/294 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------S 52
+L PKDFD++T+A ++V +VF C ++G+RF + HV F ++EV++F
Sbjct: 86 LLGLKPKDFDVVTNAHPEQVRQVFKNCRLIGRRFRLAHVVFGREVIEVATFRGHHTGDDE 145
Query: 53 TSGRRFSRDFKYEFERPI-GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
TS + D + G E+D R RDF+IN L + IYD+ GIE
Sbjct: 146 TSPKASQSDAGQILRDNVYGTIEEDAER------RDFSINALYYSVADFAIYDFANGIEA 199
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
I + K++ + T ++ED R+LRA+R A +L + + +K L+ + + RL
Sbjct: 200 IAQRKIELIGDPETRYREDPVRMLRAVRFATKLNMEIAPGSKEPIKELAVLLKNIPAARL 259
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E + G A + +L G+L+ LLP Q A ++K K NL+ + D
Sbjct: 260 FEEFLKLFMAGKAFDNFLMLNDLGILKQLLP-QLAKVLKQD--SSGKVFNLITKAMQDTD 316
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIA 285
+ +A D+P + A L ++ P+ L V +G + ++A+ IA
Sbjct: 317 QRIAIDKPVTPAFTFAALLWY---------PVEQRAEQLLVESGLNEVDALNIA 361
>gi|334144335|ref|YP_004537491.1| poly(A) polymerase [Thioalkalimicrobium cyclicum ALM1]
gi|333965246|gb|AEG32012.1| poly(A) polymerase [Thioalkalimicrobium cyclicum ALM1]
Length = 469
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 130/265 (49%), Gaps = 34/265 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVF-SQCEIVGKRFPICHVHFENTIVEVSSF-------- 51
ML PKDFDI T+A +V +VF +C+++G+RF + H+ + I+EV++F
Sbjct: 78 MLGIEPKDFDIATNASPDQVKQVFRHRCQLIGRRFRLAHIRYGRLIIEVATFRGDQENGH 137
Query: 52 -----STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYI 106
SGR RD Y G ++D WR RDFTIN L +DP ++ DY+
Sbjct: 138 PARQVDDSGR-LLRDNVY------GSMDEDV--WR----RDFTINALYYDPKRDVVIDYV 184
Query: 107 GGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKL 166
G ED+ ++ + ++ED R++RA+R AA+LGF+ + + L + ++
Sbjct: 185 AGREDLYAGQIVLIGDPWVRYREDPVRMIRAVRFAAKLGFKLAPSAEKPIGELGVLLKEV 244
Query: 167 DRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV--KHGFRRRDKRSNLLL 224
R+ E+ + GSA L + L + L P+ A L K F R+ L++
Sbjct: 245 SNARMFDEVLKLFHSGSAILVFEKLRHYDLFKHLFPLTDAILASEKEQFPRQ-----LVI 299
Query: 225 SLFSNLDKLLAPDRPCHSSLWIAIL 249
+ D+ +A D+P + + A +
Sbjct: 300 EALQSTDRRIAEDKPVNPAFLFAAM 324
>gi|90412020|ref|ZP_01220027.1| putative polyA polymerase [Photobacterium profundum 3TCK]
gi|90326998|gb|EAS43377.1| putative polyA polymerase [Photobacterium profundum 3TCK]
Length = 449
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 128/269 (47%), Gaps = 22/269 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A +E+ +F C ++G+RF + H+ F ++EV++F G
Sbjct: 45 LLHKQPKDFDIATNATPEEIKSLFRNCRLIGRRFRLAHILFGRDVIEVATFR--GHHSDA 102
Query: 61 DFKYEFERPIGCDEKDFIRWR-----------------NCLQRDFTINGLMFDPYAKIIY 103
K E + K I + + +RDFTIN + + +
Sbjct: 103 PVKVEIKDKADAKGKQQISSKSQEGMLLRDNVYGTIDEDAERRDFTINAMYYSAKDFTVT 162
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ED+ V+ + T ++ED R+LRA+R AA+L +TA ++ L+P +
Sbjct: 163 DYANGVEDLNNRIVRLMGDPETRYREDPVRMLRAVRFAAKLDMTIEEKTAAPIEELAPLL 222
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E +L G A+ +LL ++ L + L PI A + + + ++
Sbjct: 223 RDIPSARLFEESLKLLQAGQGLATYKLLRQYNLFQQLFPILADHFTED---HSSQTEQMI 279
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
+ + DK +A D+ + + A + ++
Sbjct: 280 EHILAATDKRIAEDKRVNPAFIYAAMLWY 308
>gi|262393336|ref|YP_003285190.1| poly(A) polymerase [Vibrio sp. Ex25]
gi|262336930|gb|ACY50725.1| poly(A) polymerase [Vibrio sp. Ex25]
Length = 453
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 114/219 (52%), Gaps = 16/219 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 63 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGH------ 116
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
+ + + I K+ + R+ + +RDFTIN + ++ I+DY GIED
Sbjct: 117 -HQEQKNKSISQQSKEGMLLRDNVYGTIDEDAERRDFTINSMYYNIADYSIHDYARGIED 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + T ++ED R+LRA+R A +L F +TA ++H++P + + RL
Sbjct: 176 LEDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEHMAPLLGDIPSARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + LL ++ L + L P AA+ +
Sbjct: 236 FEESLKLLQSGHGLETYHLLREYNLFQQLFPTIAAHFTE 274
>gi|417958237|ref|ZP_12601153.1| polyA polymerase [Neisseria weaveri ATCC 51223]
gi|343967299|gb|EGV35548.1| polyA polymerase [Neisseria weaveri ATCC 51223]
Length = 448
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 111/209 (53%), Gaps = 7/209 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A+ +EV ++F + I+G+RF I HV +EV++F +G+
Sbjct: 65 LLGMEPKDFDVATNAKPEEVRKLFRRSRIIGRRFQIVHVMVGPETIEVTTFRGNGKVVQN 124
Query: 61 DF-KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + + G +D +R RDFT N L +DP + I D+ G+ DI+ K+
Sbjct: 125 EHGRIMKDNHFGTIAEDAMR------RDFTCNALYYDPTREQIIDFHHGVADIQAGKLVM 178
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ + +QED RILRA+R++ +LGF +TA + H + + + RL E+ +L
Sbjct: 179 IGDPAARYQEDPVRILRAVRLSGKLGFEVEEKTAAPITHYAQRLKQEPVARLFDEIMKLL 238
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
G A L+ L G+ + + P+ A L
Sbjct: 239 FSGYARKCLKQLKHLGISDNIHPLLDALL 267
>gi|345875062|ref|ZP_08826858.1| polyA polymerase [Neisseria weaveri LMG 5135]
gi|343969489|gb|EGV37701.1| polyA polymerase [Neisseria weaveri LMG 5135]
Length = 448
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 111/209 (53%), Gaps = 7/209 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A+ +EV ++F + I+G+RF I HV +EV++F +G+
Sbjct: 65 LLGMEPKDFDVATNAKPEEVRKLFRRSRIIGRRFQIVHVMVGPETIEVTTFRGNGKVVQN 124
Query: 61 DF-KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + + G +D +R RDFT N L +DP + I D+ G+ DI+ K+
Sbjct: 125 EHGRIMKDNHFGTIAEDAMR------RDFTCNALYYDPTREQIIDFHHGVADIQAGKLVM 178
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ + +QED RILRA+R++ +LGF +TA + H + + + RL E+ +L
Sbjct: 179 IGDPAARYQEDPVRILRAVRLSGKLGFEVEEKTAAPITHYAQRLKQEPVARLFDEIMKLL 238
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
G A L+ L G+ + + P+ A L
Sbjct: 239 FSGYARKCLKQLKHLGISDNIHPLLDALL 267
>gi|410640312|ref|ZP_11350848.1| poly(A) polymerase [Glaciecola chathamensis S18K6]
gi|410140137|dbj|GAC09035.1| poly(A) polymerase [Glaciecola chathamensis S18K6]
Length = 409
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 18/218 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T A ++V +F C ++G+RF + HV F I+EV++F G S+
Sbjct: 10 LLGKKPKDFDVTTDATPEQVKELFRNCRLIGRRFRLAHVVFGREIIEVATFR--GHHPSQ 67
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQ----------------RDFTINGLMFDPYAKIIYD 104
D E ++ ++ + + Q RDFT+N + ++ I+D
Sbjct: 68 DEDKENDKDKDSKGQNLSKQSDHGQLLRDNVFGSIEEDAERRDFTVNAMYYNIADYSIHD 127
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
+ G++ ++ ++ + +T ++ED R+LRA+R + +LG + S ETA + L+P +
Sbjct: 128 FANGMQAVKNRQITMIGDPATRYREDPVRMLRAVRFSVKLGMKISPETAKPIYELAPLMA 187
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
+ RL E+ +L G + +LL +FGL E L P
Sbjct: 188 NIPPARLFEEVLKLLLSGQGLETYKLLNEFGLFEQLFP 225
>gi|410648508|ref|ZP_11358916.1| poly(A) polymerase [Glaciecola agarilytica NO2]
gi|410131966|dbj|GAC07315.1| poly(A) polymerase [Glaciecola agarilytica NO2]
Length = 409
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 113/218 (51%), Gaps = 18/218 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T A ++V +F C ++G+RF + HV F I+EV++F G S+
Sbjct: 10 LLGKKPKDFDVTTDATPEQVKELFRNCRLIGRRFRLAHVVFGREIIEVATFR--GHHPSQ 67
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQ----------------RDFTINGLMFDPYAKIIYD 104
D E ++ ++ + + Q RDFT+N + ++ I+D
Sbjct: 68 DEDKENDKDKDSKGQNLSKQSDHGQLLRDNVFGSIEEDAERRDFTVNAMYYNIADYSIHD 127
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
+ G++ ++ ++ + +T ++ED R+LRA+R + +LG + S ETA + L+P +
Sbjct: 128 FANGMQAVKNRQITMIGDPATRYREDPVRMLRAVRFSVKLGMKISPETAKPIYELAPLMA 187
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
+ RL E+ +L G + +LL +FGL E L P
Sbjct: 188 NIPPARLFEEVLKLLLSGQGLETYKLLNEFGLFEQLFP 225
>gi|53720430|ref|YP_109416.1| polynucleotide adenylyltransferase [Burkholderia pseudomallei
K96243]
gi|76810345|ref|YP_334685.1| poly(A) polymerase [Burkholderia pseudomallei 1710b]
gi|126442154|ref|YP_001060282.1| poly(A) polymerase [Burkholderia pseudomallei 668]
gi|126452950|ref|YP_001067541.1| poly(A) polymerase [Burkholderia pseudomallei 1106a]
gi|217420727|ref|ZP_03452232.1| poly(A) polymerase [Burkholderia pseudomallei 576]
gi|226194299|ref|ZP_03789898.1| poly(A) polymerase [Burkholderia pseudomallei Pakistan 9]
gi|237813672|ref|YP_002898123.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia pseudomallei MSHR346]
gi|242316927|ref|ZP_04815943.1| poly(A) polymerase [Burkholderia pseudomallei 1106b]
gi|254180767|ref|ZP_04887365.1| poly(A) polymerase [Burkholderia pseudomallei 1655]
gi|254191602|ref|ZP_04898105.1| poly(A) polymerase [Burkholderia pseudomallei Pasteur 52237]
gi|254194852|ref|ZP_04901282.1| poly(A) polymerase [Burkholderia pseudomallei S13]
gi|254258221|ref|ZP_04949275.1| poly(A) polymerase [Burkholderia pseudomallei 1710a]
gi|254299144|ref|ZP_04966594.1| poly(A) polymerase [Burkholderia pseudomallei 406e]
gi|386860604|ref|YP_006273553.1| polyA polymerase [Burkholderia pseudomallei 1026b]
gi|418377975|ref|ZP_12965991.1| polyA polymerase [Burkholderia pseudomallei 354a]
gi|418539067|ref|ZP_13104668.1| polyA polymerase [Burkholderia pseudomallei 1026a]
gi|418552545|ref|ZP_13117404.1| polyA polymerase [Burkholderia pseudomallei 354e]
gi|52210844|emb|CAH36831.1| putative polynucleotide adenylyltransferase [Burkholderia
pseudomallei K96243]
gi|76579798|gb|ABA49273.1| polyA polymerase [Burkholderia pseudomallei 1710b]
gi|126221647|gb|ABN85153.1| poly(A) polymerase [Burkholderia pseudomallei 668]
gi|126226592|gb|ABN90132.1| poly(A) polymerase [Burkholderia pseudomallei 1106a]
gi|157809255|gb|EDO86425.1| poly(A) polymerase [Burkholderia pseudomallei 406e]
gi|157939273|gb|EDO94943.1| poly(A) polymerase [Burkholderia pseudomallei Pasteur 52237]
gi|169651601|gb|EDS84294.1| poly(A) polymerase [Burkholderia pseudomallei S13]
gi|184211306|gb|EDU08349.1| poly(A) polymerase [Burkholderia pseudomallei 1655]
gi|217396139|gb|EEC36156.1| poly(A) polymerase [Burkholderia pseudomallei 576]
gi|225933764|gb|EEH29752.1| poly(A) polymerase [Burkholderia pseudomallei Pakistan 9]
gi|237503094|gb|ACQ95412.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia pseudomallei MSHR346]
gi|242140166|gb|EES26568.1| poly(A) polymerase [Burkholderia pseudomallei 1106b]
gi|254216910|gb|EET06294.1| poly(A) polymerase [Burkholderia pseudomallei 1710a]
gi|385346748|gb|EIF53423.1| polyA polymerase [Burkholderia pseudomallei 1026a]
gi|385372954|gb|EIF78036.1| polyA polymerase [Burkholderia pseudomallei 354e]
gi|385377840|gb|EIF82379.1| polyA polymerase [Burkholderia pseudomallei 354a]
gi|385657732|gb|AFI65155.1| polyA polymerase [Burkholderia pseudomallei 1026b]
Length = 515
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 98 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 157
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 158 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 213
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 214 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 273
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 274 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 309
>gi|418539847|ref|ZP_13105422.1| polyA polymerase [Burkholderia pseudomallei 1258a]
gi|418546097|ref|ZP_13111329.1| polyA polymerase [Burkholderia pseudomallei 1258b]
gi|385363596|gb|EIF69363.1| polyA polymerase [Burkholderia pseudomallei 1258a]
gi|385365490|gb|EIF71164.1| polyA polymerase [Burkholderia pseudomallei 1258b]
Length = 515
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 98 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 157
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 158 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 213
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 214 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 273
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 274 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 309
>gi|410627296|ref|ZP_11338038.1| poly(A) polymerase [Glaciecola mesophila KMM 241]
gi|410153146|dbj|GAC24807.1| poly(A) polymerase [Glaciecola mesophila KMM 241]
Length = 415
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 110/209 (52%), Gaps = 8/209 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T A ++V +F C ++G+RF + HV F ++EV++F
Sbjct: 23 LLGKKPKDFDVTTDATPEQVKELFRNCRLIGRRFRLAHVVFGREVIEVATFRGHHPVEDE 82
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ K E D +R + +RDFT+N + ++ I+D+ G+E ++
Sbjct: 83 NAK-EQNLSKQSDHGQLLRDNVFGSIEEDAERRDFTVNAMYYNIADYSIHDFANGMEAVK 141
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+ ++ + +T ++ED R+LRA+R A +LG + S ETA + L+P + + RL
Sbjct: 142 QRQITMIGDPATRYREDPVRMLRAVRFAVKLGMKISPETAKPMYELAPLMANIPPARLFE 201
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
E+ +L G + +LL +FGL E L P
Sbjct: 202 EVLKLLLSGQGLETYKLLNEFGLFEQLFP 230
>gi|390948548|ref|YP_006412307.1| poly(A) polymerase [Thiocystis violascens DSM 198]
gi|390425117|gb|AFL72182.1| poly(A) polymerase [Thiocystis violascens DSM 198]
Length = 442
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/254 (30%), Positives = 120/254 (47%), Gaps = 13/254 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T A ++V +VF C ++G+RF + HVHF I+EV++F G
Sbjct: 58 LLGHEPKDFDIATDATPEQVRQVFRNCRLIGRRFRLAHVHFGRDIIEVATFRGCG----- 112
Query: 61 DFKYEFERPI--GCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
D +R + G +D I + L+RDFTIN L +D ++DY G+ D++
Sbjct: 113 DDADPLDRRLENGMIVRDNIYGSIAEDALRRDFTINALYYDIADFSLHDYADGLADLKAG 172
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
+++ + ++ED AR+LRA+R A +LGF T + L + + RL E+
Sbjct: 173 RLRLIGDPEQRYREDPARMLRAVRFACKLGFAIEPATERPLYELGSLLADIAAARLFDEL 232
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G L +GL L P A L + D + SN D+ +
Sbjct: 233 IKLFHSGYGLDVFEKLRHYGLFGQLFPDTEACLARED---HDFPITFVSRGLSNTDQRIR 289
Query: 236 PDRPCHSSLWIAIL 249
D+P + AIL
Sbjct: 290 EDKPVTPAFLFAIL 303
>gi|348618274|ref|ZP_08884803.1| Poly(A) polymerase [Candidatus Glomeribacter gigasporarum BEG34]
gi|347816406|emb|CCD29507.1| Poly(A) polymerase [Candidatus Glomeribacter gigasporarum BEG34]
Length = 491
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 87/327 (26%), Positives = 151/327 (46%), Gaps = 33/327 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---STSGRR 57
+L PKDFD+ T A +V ++F + ++G+RF I HV F I+EV++F S + R
Sbjct: 79 LLGLTPKDFDVATDATPAQVRKLFRRARLIGRRFQIVHVLFGREIIEVTTFRGSSGAPAR 138
Query: 58 FSRDFKYEFER------PI------GCDEKDFIRW----RNCLQRDFTINGLMFDPYAKI 101
S++ K + R P+ G +D + W + +RDFT+N + ++P A+
Sbjct: 139 MSQEGKRAWRRGRDSAHPLHAVDASGRVVRDNV-WGEQHEDAARRDFTVNAMYYNPAAQT 197
Query: 102 IYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSP 161
+ DY GI D+R +++ + + ++ED R+LR +R AA+LGF T ++ ++
Sbjct: 198 VLDYHNGIADVRARRLRMIGDPAARYREDPVRMLRVVRFAAKLGFEIDERTRAPIRTMAA 257
Query: 162 SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSN 221
+ + RL E +L G A ++ L GL +LP+ A L + +
Sbjct: 258 LLNSVPPARLFDEALKLLLCGHAFEGVQRLHAEGLHRCVLPLLDAAL------ENAQAAE 311
Query: 222 LLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGD---- 277
L+ N D + D+P A L +H+ R A+Y D
Sbjct: 312 LIQRALRNADARVRADQPVSPGFLFAALLWHEVCIHWQRGQAAGEYPIPALYRAMDETLQ 371
Query: 278 -MLEAVKIARRINKSHDESFCELLEPR 303
++++ I RR + E + L+PR
Sbjct: 372 LQMKSLAIQRRTSADMKEIWG--LQPR 396
>gi|403519975|ref|YP_006654109.1| poly(A) polymerase [Burkholderia pseudomallei BPC006]
gi|403075618|gb|AFR17198.1| poly(A) polymerase [Burkholderia pseudomallei BPC006]
Length = 515
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 98 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 157
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 158 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 213
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 214 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 273
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 274 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 309
>gi|53725780|ref|YP_103879.1| poly(A) polymerase [Burkholderia mallei ATCC 23344]
gi|67642145|ref|ZP_00440906.1| polyA polymerase [Burkholderia mallei GB8 horse 4]
gi|121598893|ref|YP_991856.1| polyA polymerase [Burkholderia mallei SAVP1]
gi|124383907|ref|YP_001027077.1| poly(A) polymerase [Burkholderia mallei NCTC 10229]
gi|126449512|ref|YP_001081728.1| poly(A) polymerase [Burkholderia mallei NCTC 10247]
gi|166998831|ref|ZP_02264683.1| poly(A) polymerase [Burkholderia mallei PRL-20]
gi|254178813|ref|ZP_04885467.1| poly(A) polymerase [Burkholderia mallei ATCC 10399]
gi|254202588|ref|ZP_04908951.1| poly(A) polymerase [Burkholderia mallei FMH]
gi|254207926|ref|ZP_04914276.1| poly(A) polymerase [Burkholderia mallei JHU]
gi|254355932|ref|ZP_04972210.1| poly(A) polymerase [Burkholderia mallei 2002721280]
gi|52429203|gb|AAU49796.1| polyA polymerase [Burkholderia mallei ATCC 23344]
gi|121227703|gb|ABM50221.1| polyA polymerase [Burkholderia mallei SAVP1]
gi|124291927|gb|ABN01196.1| polyA polymerase [Burkholderia mallei NCTC 10229]
gi|126242382|gb|ABO05475.1| poly(A) polymerase [Burkholderia mallei NCTC 10247]
gi|147746835|gb|EDK53912.1| poly(A) polymerase [Burkholderia mallei FMH]
gi|147751820|gb|EDK58887.1| poly(A) polymerase [Burkholderia mallei JHU]
gi|148024907|gb|EDK83085.1| poly(A) polymerase [Burkholderia mallei 2002721280]
gi|160694727|gb|EDP84735.1| poly(A) polymerase [Burkholderia mallei ATCC 10399]
gi|238523237|gb|EEP86677.1| polyA polymerase [Burkholderia mallei GB8 horse 4]
gi|243064916|gb|EES47102.1| poly(A) polymerase [Burkholderia mallei PRL-20]
Length = 515
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 98 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 157
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 158 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 213
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 214 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 273
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 274 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 309
>gi|167740036|ref|ZP_02412810.1| poly(A) polymerase [Burkholderia pseudomallei 14]
Length = 470
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 53 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 112
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 113 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 168
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 169 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 228
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 229 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 264
>gi|54310261|ref|YP_131281.1| polyA polymerase [Photobacterium profundum SS9]
gi|46914702|emb|CAG21479.1| putative polyA polymerase [Photobacterium profundum SS9]
Length = 449
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 129/271 (47%), Gaps = 26/271 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A +E+ +F C ++G+RF + H+ F ++EV++F R
Sbjct: 45 LLHKQPKDFDIATNATPEEIKSLFRNCRLIGRRFRLAHILFGRDVIEVATF----RGHHS 100
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQ-------------------RDFTINGLMFDPYAKI 101
D + E DEK + + Q RDFTIN + +
Sbjct: 101 DVPAKVEIKDKADEKGKQQVSSKSQEGMLLRDNVYGTIDEDAERRDFTINAMYYSAKDFT 160
Query: 102 IYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSP 161
+ DY G+ED+ V+ + T ++ED R+LRA+R AA+L +TA ++ L+P
Sbjct: 161 VTDYANGVEDLNNRIVRLMGDPETRYREDPVRMLRAVRFAAKLDMTIEEKTAAPIEELAP 220
Query: 162 SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSN 221
+ + RL E +L G A+ +LL ++ L + L PI A + + +
Sbjct: 221 LLRDIPSARLFEESLKLLQAGQGLATYKLLRQYNLFQQLFPILADHFTED---HSSQTEQ 277
Query: 222 LLLSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
++ + + DK +A D+ + + A + ++
Sbjct: 278 MIEHILAATDKRIAEDKRVNPAFIYAAMLWY 308
>gi|167895735|ref|ZP_02483137.1| poly(A) polymerase [Burkholderia pseudomallei 7894]
Length = 484
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 67 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 126
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 127 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 182
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 183 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 242
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 243 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 278
>gi|167817255|ref|ZP_02448935.1| poly(A) polymerase [Burkholderia pseudomallei 91]
Length = 485
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 68 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 127
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 128 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 183
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 184 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 243
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 244 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 279
>gi|424513131|emb|CCO66715.1| poly(A) polymerase I [Bathycoccus prasinos]
Length = 786
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 123/232 (53%), Gaps = 21/232 (9%)
Query: 6 PKDFDIITSAELKEVVRVFS--QCEIVGKRFPICHVH-FENT----IVEVSSFSTSGRRF 58
P+DFD++T A+ ++ VF + +VG+RF + HV F+ T VEVSS + +
Sbjct: 291 PRDFDVMTDAKYADIQHVFGWKRVRVVGRRFKVAHVRTFKPTHGRPYVEVSSCTEGDEKS 350
Query: 59 SRDFKYEFER--------------PIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYD 104
D + + P ++ +RDFT+NG+ ++ +++D
Sbjct: 351 EEDAETDGGGGNDDDDDSDDDDIDPSWQSSPRMYLRKDARKRDFTVNGMAYELLRNLLHD 410
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
Y+ G ED+R V+++ +F++D ARILRAIR++A+ ++E ++ +P +
Sbjct: 411 YVDGYEDLRDNIVRSIGKPHVAFKDDPARILRAIRVSAKRNMEPTKEVRATMRAYAPLLN 470
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRR 216
+L+R R ++E LA G ++ +++LW L+VL+P A ++ + G R+R
Sbjct: 471 ELNRERKMLETRACLARGYSKIGMKMLWMSSTLDVLMPTVARFIKERGGRKR 522
>gi|257456641|ref|ZP_05621835.1| polyA polymerase family protein [Treponema vincentii ATCC 35580]
gi|257445965|gb|EEV21014.1| polyA polymerase family protein [Treponema vincentii ATCC 35580]
Length = 395
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 109/215 (50%), Gaps = 39/215 (18%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
++ + PKDFDI TSAE + ++F ++GKRF + HV + I EVS+F + G
Sbjct: 61 LIGKTPKDFDIATSAEPARIRKIFKNSRLIGKRFRLVHVFYGPKIYEVSTFRSLEEGSVG 120
Query: 56 RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
F G ++D R RDFT+N L +DP II DY+GG+EDIRK
Sbjct: 121 NNF------------GTIDEDVRR------RDFTLNALYYDPIKNIIVDYVGGVEDIRKK 162
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAA--------RLGFRFSRETAHFVKHLSPSILKLD 167
++ +I S F ED R++RAI+ A L +R R+ A ++++SPS L +
Sbjct: 163 RLNPIIDLSHIFVEDPVRMIRAIKYATITDAAIPLLLRYRIHRD-APLIEYVSPSRLTEE 221
Query: 168 RGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
G++LM G A ++L + L L P
Sbjct: 222 IGKILMS-------GHAAEIFKMLLHYRLFLYLQP 249
>gi|167912386|ref|ZP_02499477.1| poly(A) polymerase [Burkholderia pseudomallei 112]
Length = 483
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 66 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 125
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 126 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 181
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 182 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 241
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 242 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 277
>gi|374812485|ref|ZP_09716222.1| polyA polymerase family protein [Treponema primitia ZAS-1]
Length = 408
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 105/203 (51%), Gaps = 15/203 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
ML + PKDFDI++ A + ++F ++G+RF + HV+F I EVS+F S S
Sbjct: 61 MLRKKPKDFDIVSEASPTRIKKIFRNARVIGRRFRLVHVYFGPKIFEVSTFRSLKDGSTS 120
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
F G E+D L+RDF+IN L +DP +++ DY+GG++DIR ++
Sbjct: 121 NTF--------GTIEED------VLRRDFSINALFYDPGKQVVVDYVGGMKDIRNKLIRP 166
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+IP S F++D R++RA++ AA GF+ +K + + + RL E+ ++
Sbjct: 167 IIPLSFIFKDDPVRMIRAVKYAATTGFKIPLTLRWKIKKQASLLAPVSPSRLTEEIFKII 226
Query: 180 AYGSAEASLRLLWKFGLLEVLLP 202
A L FGL L P
Sbjct: 227 HSPCAAEITESLEYFGLYRYLQP 249
>gi|152968724|ref|YP_001333833.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238893122|ref|YP_002917856.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|424829004|ref|ZP_18253732.1| poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
gi|425079908|ref|ZP_18483005.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|425090026|ref|ZP_18493111.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|150953573|gb|ABR75603.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238545438|dbj|BAH61789.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|405606833|gb|EKB79803.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW2]
gi|405614590|gb|EKB87289.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW5]
gi|414706421|emb|CCN28125.1| poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae Ecl8]
Length = 453
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 6/258 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 122 DRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVI 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL E+
Sbjct: 182 RLIGNPETRYREDPVRMLRAVRFAAKLNMTISPETAEPLPRLAALLHDVPPARLFEEVLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + LL ++ L + L P Y + G ++ ++ + N D + D
Sbjct: 242 LLQAGYGYQTYMLLREYSLFQPLFPTITRYFTERGDSPMER---IISQVLKNTDTRIHND 298
Query: 238 RPCHSSLWIAILAFHKAL 255
+ + A++ ++ L
Sbjct: 299 MRVNPAFLFAVMFWYPLL 316
>gi|167904126|ref|ZP_02491331.1| poly(A) polymerase [Burkholderia pseudomallei NCTC 13177]
Length = 482
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 65 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 124
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 125 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 180
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 181 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 240
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 241 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 276
>gi|419761859|ref|ZP_14288110.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
gi|397745400|gb|EJK92607.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae DSM
30104]
Length = 433
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 122 DRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVI 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL E+
Sbjct: 182 RLIGNPETRYREDPVRMLRAVRFAAKLNMTISPETAEPLPRLAALLHDVPPARLFEEVLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + LL ++ L + L P Y + G
Sbjct: 242 LLQAGYGYQTYMLLREYSLFQPLFPTITRYFTERG 276
>gi|378977029|ref|YP_005225170.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386033203|ref|YP_005953116.1| poly(A) polymerase I [Klebsiella pneumoniae KCTC 2242]
gi|402782377|ref|YP_006637923.1| poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|419975582|ref|ZP_14490991.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419981370|ref|ZP_14496646.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419986615|ref|ZP_14501745.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419992292|ref|ZP_14507249.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419998672|ref|ZP_14513457.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420004560|ref|ZP_14519196.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420010249|ref|ZP_14524724.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420016438|ref|ZP_14530730.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420021767|ref|ZP_14535943.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420027287|ref|ZP_14541281.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420033209|ref|ZP_14547016.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420038667|ref|ZP_14552311.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420044797|ref|ZP_14558273.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420050781|ref|ZP_14564077.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420056068|ref|ZP_14569229.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420060937|ref|ZP_14573931.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420067647|ref|ZP_14580437.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420072865|ref|ZP_14585498.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420078796|ref|ZP_14591250.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420083553|ref|ZP_14595832.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421910028|ref|ZP_16339823.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|421919373|ref|ZP_16348876.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|424935039|ref|ZP_18353411.1| Poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|428151155|ref|ZP_18998900.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|428933667|ref|ZP_19007213.1| poly(A) polymerase I [Klebsiella pneumoniae JHCK1]
gi|428941880|ref|ZP_19014906.1| poly(A) polymerase I [Klebsiella pneumoniae VA360]
gi|449059795|ref|ZP_21737477.1| poly(A) polymerase I [Klebsiella pneumoniae hvKP1]
gi|339760331|gb|AEJ96551.1| poly(A) polymerase I [Klebsiella pneumoniae KCTC 2242]
gi|364516440|gb|AEW59568.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397342803|gb|EJJ35959.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397343204|gb|EJJ36353.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397347299|gb|EJJ40407.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397359913|gb|EJJ52600.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397361217|gb|EJJ53882.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397365555|gb|EJJ58178.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397375019|gb|EJJ67327.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397379014|gb|EJJ71214.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397386352|gb|EJJ78435.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397393585|gb|EJJ85338.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397395549|gb|EJJ87254.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397403958|gb|EJJ95490.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397410618|gb|EJK01895.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397411014|gb|EJK02279.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397421084|gb|EJK12120.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397427694|gb|EJK18456.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397432038|gb|EJK22703.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397438534|gb|EJK29026.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397444504|gb|EJK34779.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397451072|gb|EJK41163.1| poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|402543238|gb|AFQ67387.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae 1084]
gi|407809226|gb|EKF80477.1| Poly(A) polymerase I [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|410116158|emb|CCM82448.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K26BO]
gi|410118404|emb|CCM91501.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST258-K28BO]
gi|426299687|gb|EKV62010.1| poly(A) polymerase I [Klebsiella pneumoniae VA360]
gi|426304689|gb|EKV66827.1| poly(A) polymerase I [Klebsiella pneumoniae JHCK1]
gi|427538974|emb|CCM95038.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae
ST512-K30BO]
gi|448874516|gb|EMB09561.1| poly(A) polymerase I [Klebsiella pneumoniae hvKP1]
Length = 436
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/258 (27%), Positives = 126/258 (48%), Gaps = 6/258 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 45 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 104
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 105 DRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVI 164
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL E+
Sbjct: 165 RLIGNPETRYREDPVRMLRAVRFAAKLNMTISPETAEPLPRLAALLHDVPPARLFEEVLK 224
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + LL ++ L + L P Y + G ++ ++ + N D + D
Sbjct: 225 LLQAGYGYQTYMLLREYSLFQPLFPTITRYFTERGDSPMER---IISQVLKNTDTRIHND 281
Query: 238 RPCHSSLWIAILAFHKAL 255
+ + A++ ++ L
Sbjct: 282 MRVNPAFLFAVMFWYPLL 299
>gi|167825666|ref|ZP_02457137.1| poly(A) polymerase [Burkholderia pseudomallei 9]
Length = 483
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 66 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 125
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 126 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 181
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 182 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 241
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 242 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 277
>gi|167580696|ref|ZP_02373570.1| polyA polymerase [Burkholderia thailandensis TXDOH]
Length = 514
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 156
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 212
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 213 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 272
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 308
>gi|167920340|ref|ZP_02507431.1| poly(A) polymerase [Burkholderia pseudomallei BCC215]
Length = 488
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 71 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 130
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 131 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 186
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 187 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 246
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 247 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 282
>gi|425078335|ref|ZP_18481438.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|425088967|ref|ZP_18492060.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
gi|405590196|gb|EKB63730.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW1]
gi|405600105|gb|EKB73272.1| Poly(A) polymerase [Klebsiella pneumoniae subsp. pneumoniae WGLW3]
Length = 453
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 3/215 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTT 121
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D G +D I + +RDFTIN L + + DY+GG++D++ +
Sbjct: 122 DRVTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLQDGVI 181
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL E+
Sbjct: 182 RLIGNPETRYREDPVRMLRAVRFAAKLNMTISPETAEPLPRLAALLHDVPPARLFEEVLK 241
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + LL ++ L + L P Y + G
Sbjct: 242 LLQAGYGYQTYMLLREYSLFQPLFPTITRYFTERG 276
>gi|83719048|ref|YP_441861.1| polyA polymerase [Burkholderia thailandensis E264]
gi|257138030|ref|ZP_05586292.1| polyA polymerase [Burkholderia thailandensis E264]
gi|83652873|gb|ABC36936.1| polyA polymerase [Burkholderia thailandensis E264]
Length = 514
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDTPQE 156
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 212
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 213 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 272
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 308
>gi|167618800|ref|ZP_02387431.1| polyA polymerase [Burkholderia thailandensis Bt4]
Length = 488
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 71 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDTPQE 130
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 131 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 186
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 187 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 246
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 247 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 282
>gi|377819870|ref|YP_004976241.1| poly(A) polymerase [Burkholderia sp. YI23]
gi|357934705|gb|AET88264.1| poly(A) polymerase [Burkholderia sp. YI23]
Length = 525
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 27/271 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T +V ++F + I+G+RF I HV F I+E S+F
Sbjct: 101 LLGVAPKDFDVATDGTPDQVQKLFRRARIIGRRFQIVHVQFGQEIIETSTFRALMDVPPE 160
Query: 52 --STSGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMFDPYAKII 102
+ RR R D + G +D + W + +RDFTIN + +DP + +
Sbjct: 161 PSAEPPRRLKRGELDGRTHAVDASGRVLRDNV-WGEQHEDATRRDFTINAMYYDPATQTV 219
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
DY G+ DIR ++ + +T ++ED R+LR +R AA+LGF T +K L+
Sbjct: 220 LDYHDGMADIRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIDEATRAPIKDLADL 279
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK-HGFRRRDKRSN 221
+ + RL EM +L G A A L L + GL +LP+ L + HG
Sbjct: 280 MNNVPAARLFDEMLKLLLSGHALACLTRLRQEGLHHGVLPLLDVVLEQPHG-------EK 332
Query: 222 LLLSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
+ ++ D+ + +P A L +H
Sbjct: 333 FVTLALTSTDERVRAGKPVSPGFLFATLLWH 363
>gi|167721064|ref|ZP_02404300.1| poly(A) polymerase [Burkholderia pseudomallei DM98]
Length = 456
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 64 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 123
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 124 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 179
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 180 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 239
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 240 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 275
>gi|167847153|ref|ZP_02472661.1| poly(A) polymerase [Burkholderia pseudomallei B7210]
Length = 488
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 71 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 130
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 131 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 186
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 187 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 246
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 247 ELADLINNVPAARLFDEMLKLLLSGHALACLKQLRK 282
>gi|116515068|ref|YP_802697.1| hypothetical protein BCc_128 [Buchnera aphidicola BCc]
gi|116256922|gb|ABJ90604.1| poly(A) polymerase I [Buchnera aphidicola BCc]
Length = 407
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 5/207 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A+ E+ ++F C ++G+RF I H+ F+N I+EVS+F +
Sbjct: 45 LLGKKPKDFDIATNAKPDEIRKLFKNCRLIGRRFIIAHLIFKNEIIEVSTFRAKNNHLKK 104
Query: 61 DFKY----EFERPIGCDEKDFIRWR-NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+ Y + ++ I + F + + +RD TIN L + I DYIGGI+DI+
Sbjct: 105 NNLYYKKIKTKKGILLSDNTFGKIEEDAYRRDITINALYYSIKDFGIRDYIGGIKDIKLK 164
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
K++ + A T ++ED R+LR IR + +L ++T + LS + ++ RL E
Sbjct: 165 KIRLIGNAETRYREDPVRMLRVIRFSVQLNMHIDKKTEKPIIKLSNLLKEIPSARLFNES 224
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLP 202
+ +G + L K+ L+ LLP
Sbjct: 225 IKLFCFGYGYLTYIRLRKYSLIYPLLP 251
>gi|238918730|ref|YP_002932244.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Edwardsiella ictaluri 93-146]
gi|238868298|gb|ACR68009.1| tRNA nucleotidyltransferase/poly(A) polymerase family protein
[Edwardsiella ictaluri 93-146]
Length = 456
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 18/261 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 61 LLGKRPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEHANE 120
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
G+ ++ K + G E+D R RDFTIN L + + DY GG+ D
Sbjct: 121 GKNIAQQGKNGMLLRDNVYGNIEEDAQR------RDFTINSLYYSVADFSVRDYTGGLND 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ +++ + T ++ED R+LRA+R AA+L + ETA + HL+ + + RL
Sbjct: 175 LHAGQIRLIGDPETRYREDPVRMLRAVRFAAKLQMSINPETAAPIAHLASLLRDIPAARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + L ++ L + L P+ + +G +K +L + N D
Sbjct: 235 FEEALKLLQAGYGYETYLKLREYQLFQPLFPVICRHFTPNGDSPMEK---ILAQVLKNTD 291
Query: 232 KLLAPDRPCHSSLWIAILAFH 252
+ D + + A + ++
Sbjct: 292 HRIQNDMRVNPAFLFATMLWY 312
>gi|427400440|ref|ZP_18891678.1| poly(A) polymerase [Massilia timonae CCUG 45783]
gi|425720480|gb|EKU83401.1| poly(A) polymerase [Massilia timonae CCUG 45783]
Length = 463
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 103/200 (51%), Gaps = 21/200 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFDI T A ++V ++F + I+G+RF I HV F ++EV++F +G
Sbjct: 65 LLGVKPKDFDIATDATPEQVKKLFRRAFIIGRRFQIVHVMFGQDLLEVTTFRGNGSDNAP 124
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R RD + G +D R RDFTIN + +DP + + DY GGIED
Sbjct: 125 KDEHGRVLRDNSF------GPQHEDAAR------RDFTINAMYYDPATQSVLDYHGGIED 172
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
IR ++ + ++ED R+LR +R AA+LGF T + ++P I + R+
Sbjct: 173 IRAKTLRIIGMPEARYREDPVRMLRVVRFAAKLGFTIEPTTRAPIPVMAPLIDNVPAARV 232
Query: 172 LMEMNYMLAYGSAEASLRLL 191
EM +L G A A L+ L
Sbjct: 233 FDEMLKLLLSGHALACLKEL 252
>gi|410617323|ref|ZP_11328294.1| poly(A) polymerase [Glaciecola polaris LMG 21857]
gi|410163160|dbj|GAC32432.1| poly(A) polymerase [Glaciecola polaris LMG 21857]
Length = 426
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 112/209 (53%), Gaps = 9/209 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T A ++V +F C ++G+RF + HV F I+EV++F G ++
Sbjct: 35 LLGKEPKDFDVTTDATPEQVKELFRNCRLIGRRFRLAHVVFGREIIEVATFR--GHHPNQ 92
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D + + D +R + +RDFT+N + ++ I+D+ G++ I
Sbjct: 93 DEEAKDNLSKQSDHGQLLRDNVFGSIEEDAERRDFTVNAMYYNIADFSIHDFAKGMQAIE 152
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
K ++ + +T ++ED R+LRA+R A +LG + S +TA+ + L+P + + RL
Sbjct: 153 KREISMIGDPATRYREDPVRMLRAVRFAVKLGMKISPDTANPMYELAPLMANIPSARLFE 212
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
E+ +L G + +LL +F L E L P
Sbjct: 213 EVLKLLLSGQGLETYKLLNEFNLFEQLFP 241
>gi|383812734|ref|ZP_09968161.1| poly(A) polymerase I [Serratia sp. M24T3]
gi|383298144|gb|EIC86451.1| poly(A) polymerase I [Serratia sp. M24T3]
Length = 511
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 115/223 (51%), Gaps = 17/223 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------S 52
+L++ PKDFDI T+A ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 116 LLHKKPKDFDITTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQVQE 175
Query: 53 TSGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
T + S+ + + G E+D R RDFTIN L + + DY GG+
Sbjct: 176 TDDKNLSQQAQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYGISDFTLRDYTGGL 229
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
+D++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + ++
Sbjct: 230 KDLKDGVIRLIGDPETRYREDPVRMLRAVRFAAKLDMTISPETAEPIPRLATLLQEIPPA 289
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
RL E +L G + +LL ++ L + L P+ A + G
Sbjct: 290 RLFEESLKLLQAGYGFRTAQLLREYQLFQPLFPLIARQFTERG 332
>gi|146329312|ref|YP_001209046.1| poly(A) polymerase PcnB [Dichelobacter nodosus VCS1703A]
gi|146232782|gb|ABQ13760.1| poly(A) polymerase PcnB [Dichelobacter nodosus VCS1703A]
Length = 430
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 112/240 (46%), Gaps = 3/240 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +E+ +F C ++G+RF + H+H+ I+EV++F S
Sbjct: 53 LLQQPPKDFDIATNARPEEIAALFRNCRLIGRRFRLAHLHYGRDIIEVATFRASA---DE 109
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
K + + + D + L+RDF IN L +D ++ DY+ + DIR +++ +
Sbjct: 110 QVKTDADGHVLEDNHYGTMEEDVLRRDFIINSLYYDVQTGVLIDYLDALADIRARQIRLI 169
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
S + ED R+LRA R AA+L +T + + + RL E+ +
Sbjct: 170 GTPSARYIEDPVRMLRAARFAAKLSMPLEAQTQQAIASCRQELRAVPAARLFDEVQKLFM 229
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G E S +L F L +L P D L+ S + D+ +A D+P
Sbjct: 230 SGYGEKSYEILRSFELFAMLFPDVDRIFSYKNKAFADYADRLIRSALQSTDQRIAHDQPV 289
>gi|389871598|ref|YP_006379017.1| poly(A) polymerase [Advenella kashmirensis WT001]
gi|388536847|gb|AFK62035.1| poly(A) polymerase [Advenella kashmirensis WT001]
Length = 469
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 9/210 (4%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---STSGRRFSRDF 62
PKDFD+ TSA +E+ +F + I+G+RF + HV F I+E S+F S + D
Sbjct: 72 PKDFDVATSATPEEIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPSQGDQHTDADG 131
Query: 63 KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
+ + G ++D R RDFT+N L +DP + + DY G+ D++ V+ +
Sbjct: 132 RILNDNVFGTQQEDAAR------RDFTLNALYYDPVKETVIDYHNGVADLKNHLVRMIGD 185
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
F+ED R+LRA+R A++L T ++ L+ I + RL E +L G
Sbjct: 186 PEKRFREDPVRMLRAVRFASKLNGTIEPATQAPIRQLAGLIKNVPDSRLFDETLKLLTCG 245
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+A +L L K GL E +LP+ L + G
Sbjct: 246 NAIVALEQLRKEGLHENVLPLIDQVLRQPG 275
>gi|167837745|ref|ZP_02464628.1| polyA polymerase [Burkholderia thailandensis MSMB43]
gi|424902998|ref|ZP_18326511.1| polyA polymerase [Burkholderia thailandensis MSMB43]
gi|390930871|gb|EIP88272.1| polyA polymerase [Burkholderia thailandensis MSMB43]
Length = 517
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 27/214 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 100 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 159
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 160 PPADAAPAKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 215
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
++ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF +T +K
Sbjct: 216 ASQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEEKTREPIK 275
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLL 191
L+ I + RL EM +L G A A L+ L
Sbjct: 276 ELADLINNVPAARLFDEMLKLLLSGHALACLKQL 309
>gi|217972060|ref|YP_002356811.1| poly(A) polymerase [Shewanella baltica OS223]
gi|386342438|ref|YP_006038804.1| poly(A) polymerase [Shewanella baltica OS117]
gi|217497195|gb|ACK45388.1| poly(A) polymerase [Shewanella baltica OS223]
gi|334864839|gb|AEH15310.1| poly(A) polymerase [Shewanella baltica OS117]
Length = 513
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 147/297 (49%), Gaps = 22/297 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++F G + K
Sbjct: 110 PKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKVS 167
Query: 66 FERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
G +D + + +RDFT+N L +D I Y GG+ D++ ++ +
Sbjct: 168 KANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGD 227
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
T ++ED R+LRA+R A +L TA +K L+P + + R+ E+ + G
Sbjct: 228 PETRYREDPVRMLRAVRFATKLNMGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAG 287
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHS 242
A A+ L+ ++ L L P Q A L+K + ++ ++ + D+ + D+P
Sbjct: 288 KALANFELMQEYKLFAPLFP-QVAALLKDD--PKGTTMKMVQAIMKSTDQRVNEDKPVTP 344
Query: 243 SLWIAILAFHKALSDQPRDPLVVAVFS-LAVYNG-----GDMLE----AVKIARRIN 289
S + A L ++ L + D +AV S L +Y+ GD++E + I RR +
Sbjct: 345 SFFYAALLWY-PLRQRAED---IAVESGLTLYDAFFAAMGDVMEQQCQTISIPRRFS 397
>gi|350551925|ref|ZP_08921135.1| poly(A) polymerase [Thiorhodospira sibirica ATCC 700588]
gi|349795855|gb|EGZ49648.1| poly(A) polymerase [Thiorhodospira sibirica ATCC 700588]
Length = 465
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 127/268 (47%), Gaps = 36/268 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------ST 53
+L R PKDFDI T A ++V ++F C ++G+RF + HV F I+EV++F T
Sbjct: 65 LLGREPKDFDIATDAHPEQVRQIFRNCRLIGRRFRLAHVFFGREIIEVATFRAALGDEHT 124
Query: 54 SGR----------RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
G+ R RD Y G E+D WR RDF++N L +D +
Sbjct: 125 DGKPRSGALLEDGRIIRDNVY------GTIEQD--AWR----RDFSVNALYYDISTFSVL 172
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY GG++D+++ ++ + + F+ED R+LRA+R AA+LGF+ T + + L +
Sbjct: 173 DYTGGMDDLKRGVLRLIGDPAVRFREDPVRLLRAVRFAAKLGFKLDPATEYHLPRLGYLL 232
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV--KHGFRRRDKRSN 221
+ RL E + G + +L + L L P L +HGF
Sbjct: 233 DDVSPARLFDEAIKLFQGGYGVQTFEMLRHYDLFCCLFPQTEEALTHEEHGF-----PLT 287
Query: 222 LLLSLFSNLDKLLAPDRPCHSSLWIAIL 249
++ + D+ +A ++P + + A L
Sbjct: 288 FVVHALRSTDERIATNKPVNPAFLYAAL 315
>gi|113969072|ref|YP_732865.1| poly(A) polymerase [Shewanella sp. MR-4]
gi|113883756|gb|ABI37808.1| poly(A) polymerase [Shewanella sp. MR-4]
Length = 435
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 130/257 (50%), Gaps = 12/257 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF----STSGR 56
+L PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++F S
Sbjct: 42 LLGLEPKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFRGHHGESNE 101
Query: 57 RFSR-DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
+ S+ + + R E D + +RDFT+N L +D I Y GG++D++
Sbjct: 102 KISKANAEGRLLRDNVYGEID----EDAERRDFTVNALYYDISDYSIRSYGGGMDDLKAG 157
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T ++ED R+LRA+R A +L TA +K L+P + + R+ E+
Sbjct: 158 TLRLIGDPETRYREDPVRMLRAVRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEV 217
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G A A+ ++ ++ L E L P Q L+K + ++ ++ + D +
Sbjct: 218 LKLFFAGKAMANFEMMQEYKLFEPLFP-QVDALLKEA--PKGPAMKMVQAIMKSTDTRVN 274
Query: 236 PDRPCHSSLWIAILAFH 252
D+P S + A + ++
Sbjct: 275 EDKPVTPSFFYAAILWY 291
>gi|126175689|ref|YP_001051838.1| poly(A) polymerase [Shewanella baltica OS155]
gi|125998894|gb|ABN62969.1| poly(A) polymerase [Shewanella baltica OS155]
Length = 450
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 147/297 (49%), Gaps = 22/297 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++F G + K
Sbjct: 47 PKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKVS 104
Query: 66 FERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
G +D + + +RDFT+N L +D I Y GG+ D++ ++ +
Sbjct: 105 KANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGD 164
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
T ++ED R+LRA+R A +L TA +K L+P + + R+ E+ + G
Sbjct: 165 PETRYREDPVRMLRAVRFATKLNMGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAG 224
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHS 242
A A+ L+ ++ L L P Q A L+K + ++ ++ + D+ + D+P
Sbjct: 225 KALANFELMQEYKLFAPLFP-QVAALLKDD--PKGTTMKMVQAIMKSTDQRVNEDKPVTP 281
Query: 243 SLWIAILAFHKALSDQPRDPLVVAVFS-LAVYNG-----GDMLE----AVKIARRIN 289
S + A L ++ L + D +AV S L +Y+ GD++E + I RR +
Sbjct: 282 SFFYAALLWY-PLRQRAED---IAVESGLTLYDAFFAAMGDVMEQQCQTISIPRRFS 334
>gi|149910512|ref|ZP_01899152.1| polyA polymerase [Moritella sp. PE36]
gi|149806472|gb|EDM66444.1| polyA polymerase [Moritella sp. PE36]
Length = 488
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/262 (27%), Positives = 131/262 (50%), Gaps = 30/262 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------------- 51
PKDFDI T+AE +++ ++F C +VG+RF + H+ F ++EV++F
Sbjct: 101 PKDFDIATNAEPEQIKKLFHNCRLVGRRFRLAHILFGRDMIEVATFRGHHVEEQEQNQQT 160
Query: 52 --STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
+ G RD Y G +D R RDFT+N L ++ + +YD+ GG+
Sbjct: 161 SKQSDGGMLLRDNVY------GNISEDAER------RDFTVNALYYNIADRAVYDFAGGL 208
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
D++ +++ + T ++ED R+LRA+R +A+L + S E +K L+ + +
Sbjct: 209 ADLQSKQLRLIGDPETRYREDPVRMLRAVRFSAKLDMQISPEAKAPIKQLANLLQSIPAA 268
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSN 229
RL E + G A+ +L+ + GL + L P+ + Y + G DK + ++L +
Sbjct: 269 RLFEETLKLFLNGHGLATYKLMKEHGLFQPLFPLVSKYQNEDGSSNCDKF--IEIALENT 326
Query: 230 LDKLLAPDRPCHSSLWIAILAF 251
++ A R + L+ A+L +
Sbjct: 327 DSRINAGKRVTPAYLYAAMLWY 348
>gi|171057366|ref|YP_001789715.1| poly(A) polymerase [Leptothrix cholodnii SP-6]
gi|170774811|gb|ACB32950.1| poly(A) polymerase [Leptothrix cholodnii SP-6]
Length = 498
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 129/276 (46%), Gaps = 23/276 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHV----HFENTIVEVSSF----- 51
+L PKDFD+ T+A ++V F + I+G+RF I HV E+ ++EVS+F
Sbjct: 68 LLGHRPKDFDVATNATPEQVKSHFRRAFIIGRRFRIVHVVHGRGREHEVIEVSTFRAKPD 127
Query: 52 -----STSGRRFSRDFKYEFERPIGCDEKDFIR---W----RNCLQRDFTINGLMFDPYA 99
SG + + + + E +R W + +RDFT+N L +DP
Sbjct: 128 ASAAEQVSGNEKTSKAALQGKSHVVDAEGRVLRDNVWGPQIDDAARRDFTVNALYYDPRG 187
Query: 100 KIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHL 159
+I+ DY GI D +K ++ + ++ED RI+R +R AA+LGF T + +
Sbjct: 188 QIVVDYHNGIADAKKRVLRMIGEPEARYREDPVRIIRVVRFAAKLGFEIEPATRAPIIRM 247
Query: 160 SPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKR 219
+ + + RL EM +L G + ASL L K GL + PI A L R D R
Sbjct: 248 ADLLANVPASRLFDEMIKLLQTGHSLASLEELRKQGLHRGVFPILDAVL--DDAHRHDGR 305
Query: 220 SNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKAL 255
+ ++ D+ + +P S +A + +H +
Sbjct: 306 EKFIQMALADTDRRVNEGKPVAPSFMLACMLWHDVI 341
>gi|387890495|ref|YP_006320793.1| poly(A) polymerase [Escherichia blattae DSM 4481]
gi|386925328|gb|AFJ48282.1| poly(A) polymerase [Escherichia blattae DSM 4481]
Length = 453
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 14/220 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEEQAD 121
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
R+ S+ + + G E+D R RDFTIN L + + DY+GG+ D+
Sbjct: 122 RQQSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGLNDL 175
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
R ++ + T ++ED R+LRA+R AA+L T + LS + + RL
Sbjct: 176 RAGIIRLIGTPETRYREDPVRMLRAVRFAAKLNMTIEPATGEPIPRLSTLLNDVPAARLY 235
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + RLL ++ L + L P Y ++G
Sbjct: 236 EESLKLLQSGYGYNTYRLLCEYQLFQPLFPTITRYFTENG 275
>gi|238754483|ref|ZP_04615838.1| Poly(A) polymerase [Yersinia ruckeri ATCC 29473]
gi|238707312|gb|EEP99674.1| Poly(A) polymerase [Yersinia ruckeri ATCC 29473]
Length = 467
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 133/279 (47%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 72 LLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 125
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++P D+ + +N + +RDFTIN L + + DY
Sbjct: 126 ---HEQQQPESNDKNSSQQAQNGMLLRDNIFGSIEEDAQRRDFTINSLYYGISDFALRDY 182
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 183 TGGLRDLKQGIIRLIGDPEVRYREDPVRMLRAVRFAAKLDMTISPETAEPIPRLASLLRE 242
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A +H ++ +L+
Sbjct: 243 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEHNDSPMER---ILIQ 299
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 300 VLKNTDYRLQNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 338
>gi|297539331|ref|YP_003675100.1| poly(A) polymerase [Methylotenera versatilis 301]
gi|297258678|gb|ADI30523.1| poly(A) polymerase [Methylotenera versatilis 301]
Length = 486
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/263 (29%), Positives = 133/263 (50%), Gaps = 16/263 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+LNR PKDFD+ T A +EV R+F + I+GKRF + HV F + +EVS+F S
Sbjct: 98 LLNRTPKDFDVATDATPEEVNRIFRRSRIIGKRFRLVHVLFGDETIEVSTFRGSHLETEG 157
Query: 61 DFKYEFERPIGCDEKDFIRWR-------NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ K + + D IR + ++RDFT N L ++P ++ + D+ G DI+
Sbjct: 158 NPKGDSKT---TDSGRIIRDNVFGSIVDDAVRRDFTANALYYNPASQEVLDFHHGYTDIK 214
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T + ED R+LRA+R++A+LG + + T + ++ + + RL
Sbjct: 215 AGVLRMIGKPETRYAEDPVRMLRAVRLSAKLGLKIDQATQAPIAKMADLLQDVPPSRLFD 274
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
EM + G A S+ L + L LLP+ L + R ++L+L + D++
Sbjct: 275 EMLKLFLSGHAMESVSALREQHLHHGLLPMLDVVLEQPMGER-----FVMLALKNTDDRI 329
Query: 234 LAPDRPCHSSLWIAILAFHKALS 256
L+ + + S A L +H+ L+
Sbjct: 330 LS-GKSANPSFLFATLLWHEMLA 351
>gi|152999383|ref|YP_001365064.1| poly(A) polymerase [Shewanella baltica OS185]
gi|373950825|ref|ZP_09610786.1| poly(A) polymerase [Shewanella baltica OS183]
gi|386323342|ref|YP_006019459.1| poly(A) polymerase [Shewanella baltica BA175]
gi|418024367|ref|ZP_12663350.1| poly(A) polymerase [Shewanella baltica OS625]
gi|151364001|gb|ABS07001.1| poly(A) polymerase [Shewanella baltica OS185]
gi|333817487|gb|AEG10153.1| poly(A) polymerase [Shewanella baltica BA175]
gi|353536327|gb|EHC05886.1| poly(A) polymerase [Shewanella baltica OS625]
gi|373887425|gb|EHQ16317.1| poly(A) polymerase [Shewanella baltica OS183]
Length = 513
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 147/297 (49%), Gaps = 22/297 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++F G + K
Sbjct: 110 PKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKVS 167
Query: 66 FERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
G +D + + +RDFT+N L +D I Y GG+ D++ ++ +
Sbjct: 168 KANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMTDLKAGTLRLIGD 227
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
T ++ED R+LRA+R A +L TA +K L+P + + R+ E+ + G
Sbjct: 228 PETRYREDPVRMLRAVRFATKLNMGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAG 287
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHS 242
A A+ L+ ++ L L P Q A L+K + ++ ++ + D+ + D+P
Sbjct: 288 KALANFELMQEYKLFAPLFP-QVAALLKDD--PKGTTMKMVQAIMKSTDQRVNEDKPVTP 344
Query: 243 SLWIAILAFHKALSDQPRDPLVVAVFS-LAVYNG-----GDMLE----AVKIARRIN 289
S + A L ++ L + D +AV S L +Y+ GD++E + I RR +
Sbjct: 345 SFFYAALLWY-PLRQRAED---IAVESGLTLYDAFFAAMGDVMEQQCQTISIPRRFS 397
>gi|304414040|ref|ZP_07395408.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1]
gi|304283254|gb|EFL91650.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1]
Length = 471
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 142/302 (47%), Gaps = 39/302 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + P+DFDI T+A ++V ++F C ++G+RF + H+ F ++EV++F
Sbjct: 80 LLGKKPQDFDIATNATPEQVRKLFRNCRLIGRRFRLAHIMFGRDVIEVATFRGHHEQELS 139
Query: 52 STSGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
S + S+ + + G E+D R RDFTIN L + ++ DY GG
Sbjct: 140 KNSDKNASQQAQSGMLLRDNIFGSIEEDAQR------RDFTINSLYYGSSDFVLRDYCGG 193
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D+++ ++ + ++ED R+LRA+R AA+L S ETA +K ++ + +
Sbjct: 194 LHDLKQGVIRLIGDPEVRYREDPVRMLRAVRFAAKLDMTISPETAEPIKRMASLLSDIPP 253
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E +L G S L ++ L + L P+ + + +H + +L+ +
Sbjct: 254 ARLFEESLKLLQGGYGYKSYLKLCEYQLFQPLFPLISNHFTEH---QDSPMERILVQVLK 310
Query: 229 NLDKLLAPDRPCHSS------LWIAI------------LAFHKALSDQPRDPLVVAVFSL 270
N D L D+ + + LW + LA+H+A S D L + SL
Sbjct: 311 NTDDRLHNDKQVNPAFLFATMLWYPLIEHAQKLKQESGLAYHEAFSLAMNDVLELENRSL 370
Query: 271 AV 272
A+
Sbjct: 371 AI 372
>gi|160874003|ref|YP_001553319.1| poly(A) polymerase [Shewanella baltica OS195]
gi|378707243|ref|YP_005272137.1| poly(A) polymerase [Shewanella baltica OS678]
gi|160859525|gb|ABX48059.1| poly(A) polymerase [Shewanella baltica OS195]
gi|315266232|gb|ADT93085.1| poly(A) polymerase [Shewanella baltica OS678]
Length = 513
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 147/297 (49%), Gaps = 22/297 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++F G + K
Sbjct: 110 PKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFR--GHHGESNEKVS 167
Query: 66 FERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
G +D + + +RDFT+N L +D I Y GG+ D++ ++ +
Sbjct: 168 KANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTLRLIGD 227
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
T ++ED R+LRA+R A +L TA +K L+P + + R+ E+ + G
Sbjct: 228 PETRYREDPVRMLRAVRFATKLNMGIETVTAAPIKQLAPLLKDIPAARMYEEVLKLFFAG 287
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHS 242
A A+ L+ ++ L L P Q A L+K + ++ ++ + D+ + D+P
Sbjct: 288 KALANFELMQEYKLFAPLFP-QVAALLKDD--PKGTTMKMVQAIMKSTDQRVNEDKPVTP 344
Query: 243 SLWIAILAFHKALSDQPRDPLVVAVFS-LAVYNG-----GDMLE----AVKIARRIN 289
S + A L ++ L + D +AV S L +Y+ GD++E + I RR +
Sbjct: 345 SFFYAALLWY-PLRQRAED---IAVESGLTLYDAFFAAMGDVMEQQCQTISIPRRFS 397
>gi|414593683|ref|ZP_11443325.1| poly(A) polymerase [Escherichia blattae NBRC 105725]
gi|403195291|dbj|GAB80977.1| poly(A) polymerase [Escherichia blattae NBRC 105725]
Length = 434
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 14/220 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 43 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEEQAD 102
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
R+ S+ + + G E+D R RDFTIN L + + DY+GG+ D+
Sbjct: 103 RQQSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGLNDL 156
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
R ++ + T ++ED R+LRA+R AA+L T + LS + + RL
Sbjct: 157 RAGIIRLIGTPETRYREDPVRMLRAVRFAAKLNMTIEPATGEPIPRLSTLLNDVPAARLY 216
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + RLL ++ L + L P Y ++G
Sbjct: 217 EESLKLLQSGYGYNTYRLLCEYQLFQPLFPTITRYFTENG 256
>gi|448243849|ref|YP_007407902.1| poly(A) polymerase I [Serratia marcescens WW4]
gi|445214213|gb|AGE19883.1| poly(A) polymerase I [Serratia marcescens WW4]
gi|453063357|gb|EMF04337.1| poly(A) polymerase I [Serratia marcescens VGH107]
Length = 438
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 25/274 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 45 LLGKKPKDFDITTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQNQE 104
Query: 61 DFKYEFERP----------IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
K ++ G E+D R RDFTIN L + + DY+GG+
Sbjct: 105 SDKNSSQQAQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYGVADFTLRDYVGGLN 158
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+++ ++ + T ++ED R+LRA+R AA+L R S ETA + L+ + ++ R
Sbjct: 159 DLKQGVIRLIGDPETRYREDPVRMLRAVRFAAKLDMRISEETAEPIPRLASLLHEIPPAR 218
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L E +L G + L ++ L + L P+ A + +L+ + N
Sbjct: 219 LFEESLKLLQAGYGFQTYLKLCEYQLFQPLFPLIARNFTPN---HDTPMERILVQVLKNT 275
Query: 231 DKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
D L D + + LW +L + L+ +
Sbjct: 276 DHRLQNDMRVNPAFLFAAMLWYPLLEHAQKLAQE 309
>gi|377578690|ref|ZP_09807666.1| poly(A) polymerase [Escherichia hermannii NBRC 105704]
gi|377540003|dbj|GAB52831.1| poly(A) polymerase [Escherichia hermannii NBRC 105704]
Length = 454
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 112/221 (50%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STS 54
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F + +
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEENVN 121
Query: 55 GRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R S+ + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRAISQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGLQD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AARL + S ET + L+ + + RL
Sbjct: 176 LKLGIIRLIGDPETRYREDPVRMLRAVRFAARLDMKISPETGEPIPRLATLLNDVPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + LL ++ L + L P + + G
Sbjct: 236 FEESLKLLQMGYGYNTYLLLREYSLFQPLFPTITRFFTEQG 276
>gi|365142746|ref|ZP_09347822.1| Poly(A) polymerase [Klebsiella sp. 4_1_44FAA]
gi|363651288|gb|EHL90363.1| Poly(A) polymerase [Klebsiella sp. 4_1_44FAA]
Length = 453
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 127/264 (48%), Gaps = 18/264 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST--SGRRF 58
+L + PKDFD+ T+A +V ++F C +VG+RF + HV F I+EV++F G
Sbjct: 62 LLGKKPKDFDVTTNATPDQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGHTI 121
Query: 59 SRDFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R + + G E+D R RDFTIN L + + DY+GG++D
Sbjct: 122 DRVTSQRGQNGMLLRDNIFGSIEEDAQR------RDFTINSLYYSVADFTVRDYVGGMKD 175
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + + RL
Sbjct: 176 LQDGVIRLIGNPETRYREDPVRMLRAVRFAAKLNMTISPETAEPLPRLAALLHDVPPARL 235
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E+ +L G + LL ++ L + L P Y + G ++ ++ + N D
Sbjct: 236 FEEVLKLLQAGYGYQTYMLLREYSLFQPLFPTITRYFTERGDSPMER---IISQVLKNTD 292
Query: 232 KLLAPDRPCHSSLWIAILAFHKAL 255
+ D + + A++ ++ L
Sbjct: 293 TRIHNDMRVNPAFLFAVMFWYPLL 316
>gi|407893899|ref|ZP_11152929.1| poly(A) polymerase [Diplorickettsia massiliensis 20B]
Length = 424
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 137/281 (48%), Gaps = 30/281 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A + V ++F ++G+RF I H+ F I+EV++F + +
Sbjct: 43 LLHKKPKDFDIATNARPETVKKIFRNALLIGRRFRIAHIRFGREIIEVTTFRAHSEK--K 100
Query: 61 DFKYEF---------ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
FK+ + G E+D WR RDFT+N + ++ + DY GG+ D
Sbjct: 101 SFKHRMVAAHGMLLRDNVYGTIEEDV--WR----RDFTMNAVYYNIADFSLVDYCGGLAD 154
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
I V+ + +QED R+LRAIR AA+L F TA + L+ + + RL
Sbjct: 155 IEAKIVRMIGDPVARYQEDPVRLLRAIRFAAKLNFTIDPATAEPIPRLASLLQHVPAARL 214
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E+ + +G A + +LL + L E L P Q A+ + ++ ++LL N D
Sbjct: 215 FEEVLKLFHHGQALKTYQLLRDYQLFEQLFP-QTAHCLD-----QETAADLLEMACQNTD 268
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRD------PLVVA 266
+ + + S A+L + A+ ++ R PLV+A
Sbjct: 269 QRVKAGKTVSPSFLFAVLLW-PAVQNKVRQSLTRHTPLVIA 308
>gi|330446882|ref|ZP_08310533.1| poly(A) polymerase I [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491073|dbj|GAA05030.1| poly(A) polymerase I [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 447
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 129/269 (47%), Gaps = 24/269 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A +E+ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 45 LLDKQPKDFDIATNATPEEIKKLFRNCRLIGRRFRLAHILFGRDIIEVATF----RGHHS 100
Query: 61 DFKYEFERPIGCDEKDFIRWRN-----------------CLQRDFTINGLMFDPYAKIIY 103
D + P +K I RN +RDFTIN L + +
Sbjct: 101 DAPVQATIPKDSKQKPQISSRNREGMLLRDNVYGTIDEDAERRDFTINALYYSVKDFTVT 160
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ED+ V+ + T ++ED R+LRA+R A +L TA ++ LS +
Sbjct: 161 DYANGVEDLNNRIVRLMGDPETRYREDPVRMLRAVRFAVKLDMDIDPATAAPIQELSSLL 220
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E +L G + R+L ++ L + L P+ A + + + +K ++
Sbjct: 221 QDIPAARLFEESLKLLQSGQGLETYRMLREYNLFQQLFPLLADHFTEDQSSQTEK---MI 277
Query: 224 LSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
+ ++ DK +A D+ + + A + ++
Sbjct: 278 EHILASTDKRIAEDKRVNPAFIYAAMLWY 306
>gi|37524869|ref|NP_928213.1| poly(A) polymerase I [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36784294|emb|CAE13169.1| Poly(A) polymerase (PAP) (Plasmid copy number protein)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 521
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 131/274 (47%), Gaps = 25/274 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A ++V ++F C +VG+RF + H+ F ++EV++F +
Sbjct: 129 LLGTKPKDFDIATNATPEQVRKLFRNCRLVGRRFRLAHIMFGQEVIEVATFRGPHEQTGS 188
Query: 61 DFKYEFERP----------IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
D K + ++ G E+D +R RDFTIN L + + DY GG+
Sbjct: 189 DDKNQSQQAQSGMLLRDNIFGSIEEDAMR------RDFTINSLYYGINDFSLRDYAGGLH 242
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+ ++ + T ++ED R+LRAIR A++L S TA + L+ + + R
Sbjct: 243 DLETGVIRLIGDPETRYREDPVRMLRAIRFASKLNMTISEGTAEPISRLAFLLSNIPPAR 302
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNL 230
L E +L G ++ +LL ++ L + L P+ Y ++ ++ N +L N
Sbjct: 303 LFEESLKLLQTGQGYSTYQLLREYRLFQPLFPLIQRYFTENNDSPMERIVNQVL---KNT 359
Query: 231 DKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
D L D+ + + LW ++ + LS +
Sbjct: 360 DYRLQNDKRVNPAFLFAAMLWYPLIEHAEKLSQE 393
>gi|304387847|ref|ZP_07370021.1| poly(A) polymerase [Neisseria meningitidis ATCC 13091]
gi|304338112|gb|EFM04248.1| poly(A) polymerase [Neisseria meningitidis ATCC 13091]
Length = 502
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 95 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 154
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 155 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 202
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++++LGF S ETA ++ SI +L RL E+
Sbjct: 203 MIGDAAERYQEDPVRILRAIRLSSKLGFELSEETA---APIAESICRLKHEPVARLFDEI 259
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 260 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 314
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 315 ADKSVSVGFVLAALMW 330
>gi|406941721|gb|EKD74135.1| hypothetical protein ACD_45C00063G0006 [uncultured bacterium]
Length = 446
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 105/210 (50%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI T+A ++V ++F C ++GKRF + H+ F I+EV++F T +
Sbjct: 66 LLKRQPKDFDIATNARPEDVRKLFKNCRLIGKRFRLAHILFGRDIIEVATFRTHHEKAHE 125
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
+ I D + +RDFTIN L ++ + DYIGG++DI+ ++ +
Sbjct: 126 HHGKMHQGMIVRDNVYGNIEDDAYRRDFTINALYYNIADFSVVDYIGGMQDIQAKLLRII 185
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
F ED R+LRA R +L + ET + LS + + RL E+ +
Sbjct: 186 GEPLQRFHEDPVRLLRAARFIGKLHLNVTSETEKPLTQLSYLLQNVSSARLFQEVLKLFH 245
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
G A+ +L K+ L E L P AA L +
Sbjct: 246 EGEITATFAVLQKYHLFEQLFPQTAACLAQ 275
>gi|330504808|ref|YP_004381677.1| poly(A) polymerase [Pseudomonas mendocina NK-01]
gi|328919094|gb|AEB59925.1| poly(A) polymerase [Pseudomonas mendocina NK-01]
Length = 462
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 29/228 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTS------ 54
+L+ PKDFD+ TSA ++V F ++G+RF + HVHF I+EV++F +
Sbjct: 67 LLDIDPKDFDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPQGEE 126
Query: 55 -----------GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
R RD Y G E D R RDFTIN L +DP + I
Sbjct: 127 EENSNQAARHESGRILRDNVY------GTLEDDAQR------RDFTINALYYDPTQEHIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R V+ + + ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKLDFEIEKHSAAPIRRLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
+ RL E+ + G AE + LL + L L P L ++
Sbjct: 235 RDIPSARLFDEVLKLFLAGYAEYTFDLLIEHDLFAQLFPASGEALKRN 282
>gi|385339802|ref|YP_005893674.1| poly(A) polymerase [Neisseria meningitidis G2136]
gi|325198046|gb|ADY93502.1| poly(A) polymerase [Neisseria meningitidis G2136]
Length = 445
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + IVG+RF I HV I+EV++F + R
Sbjct: 63 PKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 122
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 123 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 170
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 171 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 227
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 228 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 282
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 283 ADKSVSVGFVLAALMW 298
>gi|146308605|ref|YP_001189070.1| poly(A) polymerase [Pseudomonas mendocina ymp]
gi|145576806|gb|ABP86338.1| poly(A) polymerase [Pseudomonas mendocina ymp]
Length = 463
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 29/228 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTS------ 54
+L+ PKDFD+ TSA ++V F ++G+RF + HVHF I+EV++F +
Sbjct: 67 LLDIDPKDFDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPQGEE 126
Query: 55 -----------GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
R RD Y G E D R RDFTIN L +DP + I
Sbjct: 127 EENSNQAARHESGRILRDNVY------GTLEDDAQR------RDFTINALYYDPTQEHIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R V+ + + ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKLDFDIEKHSAAPIRRLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
+ RL E+ + G AE + LL + L L P L ++
Sbjct: 235 RDIPAARLFDEVLKLFLAGYAEYTFDLLLEHDLFAQLFPASGEALKRN 282
>gi|421504231|ref|ZP_15951174.1| poly(A) polymerase [Pseudomonas mendocina DLHK]
gi|400345001|gb|EJO93368.1| poly(A) polymerase [Pseudomonas mendocina DLHK]
Length = 463
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 108/228 (47%), Gaps = 29/228 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTS------ 54
+L+ PKDFD+ TSA ++V F ++G+RF + HVHF I+EV++F +
Sbjct: 67 LLDIDPKDFDVATSATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPQGEE 126
Query: 55 -----------GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
R RD Y G E D R RDFTIN L +DP + I
Sbjct: 127 EENSNQAARHESGRILRDNVY------GTLEDDAQR------RDFTINALYYDPTQEHIL 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R V+ + + ED R+LRA+R AA+L F + +A ++ L+P +
Sbjct: 175 DYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKLDFDIEKHSAAPIRRLAPML 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
+ RL E+ + G AE + LL + L L P L ++
Sbjct: 235 RDIPAARLFDEVLKLFLAGYAEYTFDLLLEHDLFAQLFPASGEALKRN 282
>gi|385337788|ref|YP_005891661.1| poly(A) polymerase [Neisseria meningitidis WUE 2594]
gi|319410202|emb|CBY90540.1| K00970 poly(A) polymerase [Neisseria meningitidis WUE 2594]
Length = 478
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + IVG+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|416205474|ref|ZP_11620565.1| poly(A) polymerase [Neisseria meningitidis 961-5945]
gi|433466978|ref|ZP_20424435.1| poly(A) polymerase family protein [Neisseria meningitidis 87255]
gi|325142111|gb|EGC64537.1| poly(A) polymerase [Neisseria meningitidis 961-5945]
gi|432203554|gb|ELK59605.1| poly(A) polymerase family protein [Neisseria meningitidis 87255]
Length = 453
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + IVG+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|378774575|ref|YP_005176818.1| poly(A) polymerase [Pasteurella multocida 36950]
gi|356597123|gb|AET15849.1| poly(A) polymerase [Pasteurella multocida 36950]
Length = 501
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGR--- 56
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F ++EV++F S
Sbjct: 108 LLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHNENN 167
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ S++ + G E+D R RDFT+N L ++P + DY GIED
Sbjct: 168 HESLAKQSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNPQDNTLRDYFHGIED 221
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + +QED R+LR++R A+L + + ++ L+P + + RL
Sbjct: 222 LKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 281
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++ L E L P Y + G
Sbjct: 282 FDECLKLLQAGYGVKTYKLLRQYRLFEQLFPSLMPYFTEKG 322
>gi|400406014|ref|YP_006588762.1| poly(A) polymerase [secondary endosymbiont of Heteropsylla cubana]
gi|400364267|gb|AFP85334.1| poly(A) polymerase [secondary endosymbiont of Heteropsylla cubana]
Length = 431
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 115/224 (51%), Gaps = 18/224 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + PKDFDI TSA +++ ++F C +VG+RF + HV F I+EV++
Sbjct: 44 LLGKKPKDFDITTSATPEQMRKLFRNCRLVGRRFRLAHVIFLPEIIEVATLRGHHQILQA 103
Query: 52 ---STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
S + + + + G E+D R RDF++N L + + DY GG
Sbjct: 104 EEASKGAALTNHNGRLLRDNIFGSIEEDAER------RDFSVNSLYYSAADFTVRDYTGG 157
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
++D+ + ++ + T ++ED R+LRA+R AA+L S ETA + L+ + ++
Sbjct: 158 LKDLEEGTIRLIGDPETRYREDPVRMLRAVRFAAKLDMTISNETAAPIPKLAGLLHEIPP 217
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
RL E +L G EA+ RLL ++ L + L P+ + ++G
Sbjct: 218 ARLFEEALKLLQAGYGEATYRLLCEYQLFQPLFPLISRNFTENG 261
>gi|218767953|ref|YP_002342465.1| poly(A) polymerase [Neisseria meningitidis Z2491]
gi|433475446|ref|ZP_20432787.1| poly(A) polymerase family protein [Neisseria meningitidis 88050]
gi|433479361|ref|ZP_20436655.1| poly(A) polymerase family protein [Neisseria meningitidis 63041]
gi|433513196|ref|ZP_20469990.1| poly(A) polymerase family protein [Neisseria meningitidis 63049]
gi|433515465|ref|ZP_20472237.1| poly(A) polymerase family protein [Neisseria meningitidis 2004090]
gi|433517342|ref|ZP_20474091.1| poly(A) polymerase family protein [Neisseria meningitidis 96023]
gi|433519563|ref|ZP_20476284.1| poly(A) polymerase family protein [Neisseria meningitidis 65014]
gi|433523678|ref|ZP_20480343.1| poly(A) polymerase family protein [Neisseria meningitidis 97020]
gi|433527952|ref|ZP_20484563.1| poly(A) polymerase family protein [Neisseria meningitidis NM3652]
gi|433530126|ref|ZP_20486719.1| poly(A) polymerase family protein [Neisseria meningitidis NM3642]
gi|433532383|ref|ZP_20488949.1| poly(A) polymerase family protein [Neisseria meningitidis 2007056]
gi|433534160|ref|ZP_20490705.1| poly(A) polymerase family protein [Neisseria meningitidis 2001212]
gi|433540696|ref|ZP_20497151.1| poly(A) polymerase family protein [Neisseria meningitidis 63006]
gi|121051961|emb|CAM08269.1| putative poly(A) polymerase [Neisseria meningitidis Z2491]
gi|432211264|gb|ELK67219.1| poly(A) polymerase family protein [Neisseria meningitidis 88050]
gi|432217164|gb|ELK73033.1| poly(A) polymerase family protein [Neisseria meningitidis 63041]
gi|432248873|gb|ELL04297.1| poly(A) polymerase family protein [Neisseria meningitidis 63049]
gi|432254053|gb|ELL09389.1| poly(A) polymerase family protein [Neisseria meningitidis 2004090]
gi|432254351|gb|ELL09686.1| poly(A) polymerase family protein [Neisseria meningitidis 96023]
gi|432255554|gb|ELL10883.1| poly(A) polymerase family protein [Neisseria meningitidis 65014]
gi|432260577|gb|ELL15835.1| poly(A) polymerase family protein [Neisseria meningitidis 97020]
gi|432266259|gb|ELL21447.1| poly(A) polymerase family protein [Neisseria meningitidis NM3652]
gi|432268054|gb|ELL23226.1| poly(A) polymerase family protein [Neisseria meningitidis NM3642]
gi|432268328|gb|ELL23499.1| poly(A) polymerase family protein [Neisseria meningitidis 2007056]
gi|432272670|gb|ELL27777.1| poly(A) polymerase family protein [Neisseria meningitidis 2001212]
gi|432277711|gb|ELL32757.1| poly(A) polymerase family protein [Neisseria meningitidis 63006]
Length = 453
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + IVG+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|323495885|ref|ZP_08100953.1| poly(A) polymerase [Vibrio sinaloensis DSM 21326]
gi|323319101|gb|EGA72044.1| poly(A) polymerase [Vibrio sinaloensis DSM 21326]
Length = 454
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 13/217 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F + S+
Sbjct: 65 LLGQQPKDFDIATNATPEQIRQLFKNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSK 124
Query: 61 DFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ + + + G ++D R RDFTIN + + I+DY GGIED+
Sbjct: 125 NVSQQSKEGMLLRDNVYGTIDEDAER------RDFTINAMYYSIADYSIHDYAGGIEDLE 178
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
V+ + T ++ED R+LRAIR A +L F +TA ++ ++ + + RL
Sbjct: 179 DKLVRLIGDPETRYREDPVRMLRAIRFAVKLDFDIEEDTAAPIEDMAVLLRDIPPARLYE 238
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E ML G + L+ ++ L + L P A + +
Sbjct: 239 ESLKMLQSGHGLETYHLMREYNLFQQLFPTIAEFFTE 275
>gi|444377501|ref|ZP_21176717.1| Poly(A) polymerase [Enterovibrio sp. AK16]
gi|443678418|gb|ELT85088.1| Poly(A) polymerase [Enterovibrio sp. AK16]
Length = 455
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 146/311 (46%), Gaps = 28/311 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+LN+ PKDFDI T+A +EV ++F C +VG+RF + H+ F ++EV++F + G
Sbjct: 59 LLNKQPKDFDIATNATPEEVRKLFRNCRLVGRRFRLAHILFGRDVIEVATFRGHHGADKG 118
Query: 56 RRF---SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S D + G ++D R RDFT+N L ++ + DY GG+ED+
Sbjct: 119 DKSASQSNDGMLLRDNVYGTIDEDAER------RDFTVNALYYNIDDFSVRDYAGGVEDL 172
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
+ ++ + T ++ED R+LRA+R AA+L + + TA + L+ + + RL
Sbjct: 173 KNRVIRLIGDPETRYREDPVRMLRAVRFAAKLDMQINEATAAPIPALAHLLRDIPAARLF 232
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E +L G+ + RLL + L L PI + + R K +L + + D
Sbjct: 233 EESLKLLQSGNGLDTYRLLRDYNLFSPLFPILDEHFTED---RSSKCEKMLELVLKSTDD 289
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSH 292
+A D+ + + A + ++ PL +A +G +A +A N
Sbjct: 290 RVANDQRINPAFMYAAMLWY---------PLETRAEEIAFESGLSYYDAFMVA--ANDIL 338
Query: 293 DESFCELLEPR 303
DE + PR
Sbjct: 339 DEQVKSIAIPR 349
>gi|153819896|ref|ZP_01972563.1| polyA polymerase [Vibrio cholerae NCTC 8457]
gi|126509566|gb|EAZ72160.1| polyA polymerase [Vibrio cholerae NCTC 8457]
Length = 457
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+P + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLAPLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML + L+ ++ L + L P A +
Sbjct: 243 MLQAAHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|421565087|ref|ZP_16010873.1| poly(A) polymerase [Neisseria meningitidis NM3081]
gi|402345416|gb|EJU80533.1| poly(A) polymerase [Neisseria meningitidis NM3081]
Length = 453
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|383757195|ref|YP_005436180.1| poly(A) polymerase PcnB [Rubrivivax gelatinosus IL144]
gi|381377864|dbj|BAL94681.1| poly(A) polymerase PcnB [Rubrivivax gelatinosus IL144]
Length = 522
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 23/277 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSFSTSGR 56
++N PKDFD+ T+A ++V +F + I+G+RF + HV F E+ ++EVS+F
Sbjct: 74 LVNLRPKDFDVATNATPEQVKALFRRAFIIGRRFRLVHVIFGRGREHEVIEVSTFRAFMD 133
Query: 57 RFSRDFKYEFERPIGCDEKDFIR-------------W----RNCLQRDFTINGLMFDPYA 99
+ + E+ + + D R W + +RDFTIN + +DP
Sbjct: 134 PAAAEQVEGNEKTVRGEATDQRRVVDASGRVLRDNVWGPQIEDAARRDFTINAMYYDPTT 193
Query: 100 KIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHL 159
+I+ DY GG+ D R ++ + T ++ED RI+R +RIAA+LGF T ++ +
Sbjct: 194 QIVVDYHGGLADSRARVLRMIGDPETRYREDPVRIVRVVRIAAKLGFEVEPATRAPMRKM 253
Query: 160 SPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKR 219
+ + + R+ EM +L G A SL L K GL + + P+ A R KR
Sbjct: 254 AALLANVPPSRMFDEMVKLLQTGHALKSLAELKKQGLDQGVFPVLDAAFRADA--RHPKR 311
Query: 220 SNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
+ + D + R S +A++ +H L
Sbjct: 312 DEFIRFALEDTDARVNDGRAVVPSFMLAVMLWHDVLD 348
>gi|404378954|ref|ZP_10984030.1| poly(A) polymerase [Simonsiella muelleri ATCC 29453]
gi|404294890|gb|EFG30895.2| poly(A) polymerase [Simonsiella muelleri ATCC 29453]
Length = 436
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 12/225 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A ++V ++F + I+G+RFPI HV VEVS+F + R +
Sbjct: 59 LLGVAPKDFDVATNARPEQVEKLFRRSRIIGRRFPIVHVMSGKETVEVSTFRSGKTRQNA 118
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
+ + + G E+D +R RDFT N L +D I D+ G+ DIR K+ +
Sbjct: 119 NGRIVKDNGYGTLEQDAMR------RDFTCNALYYDVIRHKIIDFHDGMNDIRHKKLVMI 172
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+ +QED RILRAIR++ +L F+ TA + + + RL E+ +L
Sbjct: 173 GEPAERYQEDPVRILRAIRLSGKLNFQIDENTAEPIASHAHLLQNEPVSRLFDELMKILF 232
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG------FRRRDKR 219
G A+ L+ L + + P+ A H R+ D+R
Sbjct: 233 SGHAQGCLQQLQNLNINAPIHPLLTALQQNHNQMIIKSLRQTDQR 277
>gi|320539917|ref|ZP_08039576.1| poly(A) polymerase I [Serratia symbiotica str. Tucson]
gi|320030103|gb|EFW12123.1| poly(A) polymerase I [Serratia symbiotica str. Tucson]
Length = 435
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 147/312 (47%), Gaps = 28/312 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A ++V ++F C +VG+RF + HV F I+EV++F R
Sbjct: 45 LLGKKPKDFDITTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATF-----RGHH 99
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
+ E+++ ++ + R+ + +RDFTIN L + + DY+ G+ D
Sbjct: 100 EQTPEYDKNSSQQAQNGMLLRDNIFGSIEEDAQRRDFTINSLYYGVADFTLRDYVNGLRD 159
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+++ ++ + T ++ED R+LRA+R AA+LG S ETA + L+ + ++ RL
Sbjct: 160 LQQRVIRLIGDPETRYREDPVRMLRAVRFAAKLGMTISDETAEPIPRLASLLHEIPPARL 219
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G + L ++ L + L P+ A + + ++ L+ N+D
Sbjct: 220 FEESLKLLLAGYGYPTYLKLCEYQLFQPLFPLIARHFTPNHATLMER---TLVQALKNID 276
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
LL + A + +H PL+ LA +G +A +A +N
Sbjct: 277 HLLQNSMGVTPAFLFAAMLWH---------PLLEHAQKLAQESGLGYYDAFALA--MNDV 325
Query: 292 HDESFCELLEPR 303
DE L P+
Sbjct: 326 LDEQCRSLAIPK 337
>gi|269961935|ref|ZP_06176290.1| Poly(A) polymerase [Vibrio harveyi 1DA3]
gi|269833258|gb|EEZ87362.1| Poly(A) polymerase [Vibrio harveyi 1DA3]
Length = 455
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 14/218 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 65 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQKN 124
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ K + G ++D R RDFTIN + ++ I+DY GIED+
Sbjct: 125 KNVSQQSKEGMLLRDNVYGTIDEDAER------RDFTINSMYYNIADYSIHDYARGIEDL 178
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
V+ + T ++ED R+LRA+R A +L F +TA ++ ++P + + RL
Sbjct: 179 EDRLVRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEEMAPLLRDIPSARLF 238
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E ML G + LL ++ L + L P+ A + +
Sbjct: 239 EESLKMLQSGHGLETYHLLREYNLFQQLFPVIAEHFTE 276
>gi|78485869|ref|YP_391794.1| poly(A) polymerase [Thiomicrospira crunogena XCL-2]
gi|78364155|gb|ABB42120.1| poly(A) polymerase [Thiomicrospira crunogena XCL-2]
Length = 484
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 133/282 (47%), Gaps = 44/282 (15%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVF-SQCEIVGKRFPICHVHFENTIVEVSSF-------S 52
+L PKDFD++T+AE +++ VF S+C ++G+RF + HV+F +VEV++F
Sbjct: 73 LLGLEPKDFDVVTNAEPEQIKGVFKSRCRLIGRRFRLAHVYFGRNVVEVATFRGDGDGQK 132
Query: 53 TSGR---------------RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDP 97
++GR R RD Y G E+D WR RDFTIN L ++
Sbjct: 133 SAGRSRKQVNHTRAVDDTGRLVRDNVY------GSIEEDV--WR----RDFTINSLYYNI 180
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
+ DY GG+EDI K +++ + ++ED R++RAIR AA+LGF T +
Sbjct: 181 RDFSVLDYTGGMEDIEKGQLRLIGDPEMRYREDPVRMIRAIRFAAKLGFEIEPNTKAPIY 240
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV---KHGFR 214
L+ + + R+ E+ + G A L FGL L P Q +L+ GF
Sbjct: 241 ELAHLLKDVSHARMFEEVLKLFHSGVAIEVFEKLRHFGLFTFLFP-QTHHLLSMESEGFP 299
Query: 215 RRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
R L++ + D + ++ + S A + + L
Sbjct: 300 RM-----LVIEALKSTDARIQSNKGVNPSFLFAAMLWEPMLQ 336
>gi|415910427|ref|ZP_11553292.1| Poly(A) polymerase, partial [Herbaspirillum frisingense GSF30]
gi|407762406|gb|EKF71260.1| Poly(A) polymerase, partial [Herbaspirillum frisingense GSF30]
Length = 445
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 105/194 (54%), Gaps = 5/194 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L PKDFD+ T+A ++V ++F + I+G+RF I HV F ++EV++F S
Sbjct: 85 LLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQELIEVTTFRGASAEAAP 144
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+D R E+ + +RDFTIN + +DP ++ + DY GGI DIR K++
Sbjct: 145 KDEHGRVLRDNTFGEQH----EDATRRDFTINAMYYDPASQTVLDYHGGIADIRDKKLRI 200
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ ++ED R+LR +R AA+L F ++ ++ ++P I + R+ EM +L
Sbjct: 201 IGEPEARYREDPVRMLRVVRFAAKLKFSIDPASSAPIRVMAPLIDNVPAARVFDEMLKLL 260
Query: 180 AYGSAEASLRLLWK 193
G A A L+ L K
Sbjct: 261 MSGHALACLQQLRK 274
>gi|359435327|ref|ZP_09225542.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20652]
gi|357918042|dbj|GAA61791.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20652]
Length = 430
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 132/273 (48%), Gaps = 24/273 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD++T+A +V ++F C ++G+RF + H+ F I+EV++ G ++
Sbjct: 43 LLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVATMR--GHHEAQ 100
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ K + + DE +R + +RDF+IN L + I+DY G+ I+
Sbjct: 101 EDKNQISQ--SSDEGQLLRDNVFGSIEEDAERRDFSINALYYSINDFSIHDYANGLAAIK 158
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+++ + T ++ED R+LRA+R A +L + ++ + L+ + + RL
Sbjct: 159 AKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPKSEKPITELASLLDNIPPARLFE 218
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH--GFRRRDKRSNLLLSLFSNLD 231
E+ + G AEA+ +L K+GL L P L K+ G L+ +F N D
Sbjct: 219 EILKLFLNGKAEANFLMLRKYGLFRSLFPELDKILDKNPGGL-----EHALIQQMFQNTD 273
Query: 232 KLLAPDRPCHSS------LWIAILAFHKALSDQ 258
K + D+ + LW +L K + +Q
Sbjct: 274 KRINTDKKVTPAFIFAALLWFPLLELTKKIQEQ 306
>gi|197116551|ref|YP_002136978.1| nucleic acid-independent polyadenylating polymerase [Geobacter
bemidjiensis Bem]
gi|197085911|gb|ACH37182.1| nucleic acid-independent polyadenylating polymerase [Geobacter
bemidjiensis Bem]
Length = 481
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 46/292 (15%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L R PKDFD++T A ++ ++F C ++G+RF + H+HF + I+EV++F
Sbjct: 51 LLGREPKDFDVVTDATPAQLKKMFRNCRLIGRRFRLAHLHFHDEIIEVATFRSTVDPSAE 110
Query: 52 ----------STSGRRFSRDFKYEFE---------------RPIGCDEKDFIRWRN---- 82
S + + ++ E + P +D + R+
Sbjct: 111 APAEETAEAPSEAAQELPQETVVEAKLLEEEREGRRRRGHHGPSMLKSEDGMVLRDNVFG 170
Query: 83 -----CLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRA 137
++RDFT+N L ++ I D++GG+ED+++ ++T+ F ED R++RA
Sbjct: 171 TPEEDAVRRDFTVNALFYNIADFSIIDHVGGMEDLKQGLIRTIGDPLVRFTEDPVRMIRA 230
Query: 138 IRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLL 197
IR A+ LGF T ++ L +I K RL E+ +L G+ E + +++ GL
Sbjct: 231 IRFASMLGFNIEERTEAAIEELCGTINKATPPRLYEEVLKLLLLGAGERTYQMMRHSGLF 290
Query: 198 EVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAIL 249
L P A+L + R + L +D+L+ D P L IA++
Sbjct: 291 APLFPHFDAWLERESEGYPHARVSKGLEW---VDELIGQDEPVSPPLLIALV 339
>gi|385854973|ref|YP_005901486.1| poly(A) polymerase [Neisseria meningitidis M01-240355]
gi|325203914|gb|ADY99367.1| poly(A) polymerase [Neisseria meningitidis M01-240355]
Length = 445
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 63 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 122
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 123 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 170
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 171 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 227
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 228 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 282
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 283 ADKSVSVGFVLAALMW 298
>gi|161869779|ref|YP_001598947.1| poly(A) polymerase [Neisseria meningitidis 053442]
gi|161595332|gb|ABX72992.1| poly(A) polymerase [Neisseria meningitidis 053442]
Length = 453
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++++LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSSKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLATLMW 306
>gi|398836472|ref|ZP_10593806.1| poly(A) polymerase [Herbaspirillum sp. YR522]
gi|398211585|gb|EJM98202.1| poly(A) polymerase [Herbaspirillum sp. YR522]
Length = 517
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 108/194 (55%), Gaps = 5/194 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+ PKDFD+ T+A ++V ++F + I+G+RF I HV F ++EV++F R S
Sbjct: 71 LLSIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQELIEVTTF----RGASA 126
Query: 61 DFKYEFERPIGCDEKDFI-RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
D + E + F + + ++RDFTIN + +DP ++ + DY GGI DIR ++
Sbjct: 127 DASPKDEHGRVLRDNTFGEQHEDAVRRDFTINAMYYDPASQTVLDYHGGIADIRAKTLRI 186
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ ++ED R+LR +R AA+L F ++ ++ ++P I + R+ EM +L
Sbjct: 187 IGEPEARYREDPVRMLRVVRFAAKLKFNIDPASSQPIRVMAPLIDNVPAARVFDEMLKLL 246
Query: 180 AYGSAEASLRLLWK 193
G A A L+ L K
Sbjct: 247 MSGHALACLQQLRK 260
>gi|121634621|ref|YP_974866.1| poly(A) polymerase [Neisseria meningitidis FAM18]
gi|120866327|emb|CAM10068.1| putative poly(A) polymerase [Neisseria meningitidis FAM18]
Length = 448
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 66 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 125
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 126 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 173
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 174 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 230
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 231 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 285
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 286 ADKSVSVGFVLAALMW 301
>gi|300309964|ref|YP_003774056.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum
seropedicae SmR1]
gi|300072749|gb|ADJ62148.1| tRNA nucleotidyltransferase/poly(A) polymerase protein
[Herbaspirillum seropedicae SmR1]
Length = 534
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 105/194 (54%), Gaps = 5/194 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L PKDFD+ T+A ++V ++F + I+G+RF I HV F ++EV++F S
Sbjct: 87 LLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQELIEVTTFRGASAEAAP 146
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+D R E+ + +RDFTIN + +DP ++ + DY GGI DIR K++
Sbjct: 147 KDEHGRVLRDNTFGEQH----EDATRRDFTINAMYYDPASQAVLDYHGGIADIRDKKLRI 202
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ ++ED R+LR +R AA+L F ++ ++ ++P I + R+ EM +L
Sbjct: 203 IGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIRVMAPLIDNVPAARVFDEMLKLL 262
Query: 180 AYGSAEASLRLLWK 193
G A A L+ L K
Sbjct: 263 MSGHALACLQQLRK 276
>gi|389606068|emb|CCA44981.1| poly(A) polymerase [Neisseria meningitidis alpha522]
Length = 453
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV ++EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEVIEVTTFRGGAKVHQNARGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ G++DI + K+
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGMDDIAERKLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S+ TA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSQATA---GPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|238761613|ref|ZP_04622588.1| Poly(A) polymerase [Yersinia kristensenii ATCC 33638]
gi|238700127|gb|EEP92869.1| Poly(A) polymerase [Yersinia kristensenii ATCC 33638]
Length = 483
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 88 LLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 141
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 142 ---HEQQQAEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQRRDFTINSLYYGISDFALRDY 198
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 199 TGGLRDLKEGIIRLIGSPETRYREDPVRMLRAVRFAAKLDMTISPETAEPIPRLASLLHE 258
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A + +H +L+
Sbjct: 259 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARHFTEH---HDSPMERILVQ 315
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 316 VLKNTDYRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 354
>gi|269101800|ref|ZP_06154497.1| poly(A) polymerase [Photobacterium damselae subsp. damselae CIP
102761]
gi|268161698|gb|EEZ40194.1| poly(A) polymerase [Photobacterium damselae subsp. damselae CIP
102761]
Length = 430
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 132/268 (49%), Gaps = 16/268 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---STSGRR 57
+LN+ PKDFDI T+A +E+ +F C +VG+RF + H+ F I+EV++F + +
Sbjct: 23 LLNKQPKDFDIATNATPEEIKALFRNCRLVGRRFRLAHILFGRDIIEVATFRGHHSDPQP 82
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCL--------QRDFTINGLMFDPYAKIIYDYIGGI 109
++ + + ++ ++ + N +RDFTIN L + + DY G+
Sbjct: 83 LPKEKEAKQKQTSAQNQSGMLLRDNVYGTIDEDAERRDFTINALYYSVKDFTVTDYAHGV 142
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
ED+ ++ + T ++ED R+LRA+R AA+L R T +K L+ + +
Sbjct: 143 EDLDDGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMNIERNTEAPIKQLAHLLQDIPAA 202
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS-LFS 228
RL E +L G A+ LL ++ L E L P+ L +H R ++ L+L +
Sbjct: 203 RLFEESLKLLQSGQGLATYHLLRQYNLFEQLFPL----LGEHFTEDRSSQTELMLEHILQ 258
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALS 256
D+ +A + + + A + ++ ++
Sbjct: 259 ATDERIAEGKRINPAFMFAAMLWYPLMT 286
>gi|212558579|gb|ACJ31033.1| PolyA polymerase [Shewanella piezotolerans WP3]
Length = 433
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 147/313 (46%), Gaps = 44/313 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST----SGR 56
+L PKDFD++T+A +E+ R+F C +VG+RF + H+ F ++EV++ SG
Sbjct: 42 LLGMQPKDFDVVTNATPEEIKRLFRNCRLVGRRFRLAHIVFGRDVIEVATLRGHHVDSGE 101
Query: 57 RFS---------RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIG 107
+ S RD Y G ++D R RDFT+N L +D I+ Y G
Sbjct: 102 KISKTNESGRLLRDNVY------GSIDEDAER------RDFTVNALYYDISDFSIHSYGG 149
Query: 108 GIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLD 167
G++D+ ++ + T ++ED R+LRA+R A +L A ++ L+P + +
Sbjct: 150 GLQDLESRTIRLIGDPETRYREDPVRMLRAVRFATKLDMSIESAAADPIQELAPLLKDIP 209
Query: 168 RGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL--VKHGFRRRDKRSNLLLS 225
R+ E+ + G A + ++ FGL L P+ L HG + LL
Sbjct: 210 AARMYEEVLKLFFAGKAAQNYNMMRDFGLFAPLFPLVDTQLNEAPHG-----PIAKLLQE 264
Query: 226 LFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNG-----GDMLE 280
+ N D + ++P + + A + ++ L+ + D + L++Y+ GD++E
Sbjct: 265 MMENTDSRIEQEKPVTPAFFYAAMLWY-PLTQRADD--IALESGLSLYDAYTAAMGDIME 321
Query: 281 ----AVKIARRIN 289
++ I RR +
Sbjct: 322 QQCRSISIPRRFS 334
>gi|416183664|ref|ZP_11612677.1| poly(A) polymerase [Neisseria meningitidis M13399]
gi|325134021|gb|EGC56676.1| poly(A) polymerase [Neisseria meningitidis M13399]
Length = 453
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 125/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV ++EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEVIEVTTFRGGAKVHQNARGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ G++DI + K+
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGMDDIAERKLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S+ TA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSQATA---GPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|149376132|ref|ZP_01893897.1| poly(A) polymerase [Marinobacter algicola DG893]
gi|149359537|gb|EDM47996.1| poly(A) polymerase [Marinobacter algicola DG893]
Length = 439
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 144/313 (46%), Gaps = 34/313 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSG----- 55
+L PKDFDI T+A +EV +F ++G+RF I HV F ++EV++F +
Sbjct: 58 LLGGKPKDFDIATNATPEEVHDLFRNSRLIGRRFRIVHVLFGREVIEVTTFRGNAAEAEA 117
Query: 56 ------RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGI 109
RR S + G E+D L+RDFT+N L + + D+ GI
Sbjct: 118 DDDDDDRRTSEHGLLLRDNVYGNLEED------ALRRDFTVNALYYCIRDFTVVDFANGI 171
Query: 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRG 169
ED+ +++ + T ++ED R+LRA+R AA+LGF +T ++ L+P + +
Sbjct: 172 EDLENRQMRLIGDPETRYREDPVRMLRAVRFAAKLGFDIEPDTEAPIRELAPLLTHIPPA 231
Query: 170 RLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSN 229
RL E+ + + G EA+ LL ++ LL L P + + +G + L+ N
Sbjct: 232 RLFEEVLKLFSAGYGEATYDLLSEYNLLAPLFP-ETVQAINNG-----EPDELIRKALRN 285
Query: 230 LDKLLAPDRPCH------SSLWIAILAFHKALSD--QPRDPLVVAVFSLAVYNGGDMLEA 281
D +A + + LW A+ A + D +P P + + + G ++A
Sbjct: 286 TDARIAQGKSVTPYFLFAAMLWPALQAEWRKRQDNGEPVQPALHMAIAKVI---GRQVQA 342
Query: 282 VKIARRINKSHDE 294
I +R + E
Sbjct: 343 TSIPKRFSGPMKE 355
>gi|399521899|ref|ZP_10762564.1| poly(A) polymerase [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399109934|emb|CCH39124.1| poly(A) polymerase [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 464
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 110/229 (48%), Gaps = 31/229 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L+ PKDFD+ T+A ++V F ++G+RF + HVHF I+EV++F
Sbjct: 67 LLDIDPKDFDVATNATPEQVRAEFRNARVIGRRFKLVHVHFGREIIEVATFRANHPQGDE 126
Query: 52 ---------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKII 102
+ SGR RD Y G E D R RDFTIN L +DP + I
Sbjct: 127 EENTNLASRNESGR-ILRDNVY------GTLEDDAQR------RDFTINALYYDPTQEHI 173
Query: 103 YDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPS 162
DY G+ D+R V+ + + ED R+LRA+R AA+L F + +A ++ L+P
Sbjct: 174 LDYARGMHDVRNHLVRLIGDPEQRYLEDPVRMLRAVRFAAKLDFDIEKHSAAPIRRLAPM 233
Query: 163 ILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
+ + RL E+ + G AE + LL + L L P L ++
Sbjct: 234 LRDIPSARLFDEVLKLFLAGYAEYTFDLLLEHDLFAQLFPASGEALKRN 282
>gi|254804714|ref|YP_003082935.1| poly(A) polymerase [Neisseria meningitidis alpha14]
gi|254668256|emb|CBA05110.1| poly(A) polymerase [Neisseria meningitidis alpha14]
Length = 453
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|421537863|ref|ZP_15984045.1| poly(A) polymerase [Neisseria meningitidis 93003]
gi|402317900|gb|EJU53427.1| poly(A) polymerase [Neisseria meningitidis 93003]
Length = 453
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|113461167|ref|YP_719236.1| poly(A) polymerase [Haemophilus somnus 129PT]
gi|112823210|gb|ABI25299.1| poly(A) polymerase [Haemophilus somnus 129PT]
Length = 457
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 125/250 (50%), Gaps = 6/250 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A+ ++V +F QC +VG+RF + H+ F I+EV++F + S
Sbjct: 66 LLGKKPKDFDVATNAKPEQVQAIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRAAHSDNH 125
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
R K + D ++ +RDFT+N ++P + DY GIED++ K+
Sbjct: 126 NERQAKQNNAGMLLRDNVYGTIEQDAERRDFTVNAFYYNPQNNTLRDYFNGIEDLKAGKL 185
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LR+IR A+L + + +K ++ + + RL E
Sbjct: 186 RLIGDPVKRYQEDPVRMLRSIRFMAKLDMFLDKPSQEPIKKMAHLLKNIPPARLFDESVK 245
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + +LL ++GL + L P Y +K ++++ ++ D+ +A +
Sbjct: 246 LLQAGYGIKTYQLLREYGLFDQLFPTLTPYFTDKADSFAEK---MIITALTSTDERVADN 302
Query: 238 RPCHSSLWIA 247
P + + A
Sbjct: 303 LPINPAFLFA 312
>gi|414561823|ref|NP_716503.2| polyA polymerase PcnB [Shewanella oneidensis MR-1]
gi|410519568|gb|AAN53948.2| polyA polymerase PcnB [Shewanella oneidensis MR-1]
Length = 478
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 148/302 (49%), Gaps = 22/302 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++F G
Sbjct: 85 LLGLEPKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFR--GHHGES 142
Query: 61 DFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ K G +D + + +RDFT+N L +D I Y GG+ED++ +
Sbjct: 143 NEKISKANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTL 202
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L TA +K L+P + + R+ E+
Sbjct: 203 RLIGDPETRYREDPVRMLRAVRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLK 262
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G A A+ ++ ++ L L P Q L+K + ++ ++ + D + D
Sbjct: 263 LFFAGKAVANFDMMQEYKLFAPLFP-QVDALLKEA--PKGPAMKMVQAIMKSTDDRVNED 319
Query: 238 RPCHSSLWIAILAFHKALSDQPRDPLVVAVFS-LAVYNG-----GDMLE----AVKIARR 287
+P S + A + ++ L + D +AV S L +Y+ GD++E + I RR
Sbjct: 320 KPVTPSFFYAAILWY-PLRQRAED---IAVESGLTLYDAFFAAMGDVMEQQCQTISIPRR 375
Query: 288 IN 289
+
Sbjct: 376 FS 377
>gi|261345791|ref|ZP_05973435.1| polyA polymerase [Providencia rustigianii DSM 4541]
gi|282566280|gb|EFB71815.1| polyA polymerase [Providencia rustigianii DSM 4541]
Length = 529
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 127/250 (50%), Gaps = 6/250 (2%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFDI T+A +++ ++F C +VG+RF + H+ F I+EV++F + D
Sbjct: 140 PKDFDITTNATPEQIRKLFRNCRLVGRRFRLAHIMFGPEIIEVATFRGHHDQEVDDKNLS 199
Query: 66 FERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
+ G +D I + ++RDFT+N L ++ + DY+ G++D++ ++ +
Sbjct: 200 SQAQNGMLLRDNIFGSIEDDAIRRDFTVNSLYYNIDDFSVRDYVNGLQDLKDGVIRLIGD 259
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
T ++ED R++RA+R A +L R TA + L+P + ++ RL E +L G
Sbjct: 260 PETRYREDPVRMIRAVRFACKLNMRIEPNTAEPIPRLAPLLGEIPSARLFEESLKLLQSG 319
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHS 242
++ ++L ++ L E L P+ A ++ +K ++ + N D L D+ +
Sbjct: 320 YGYSTYKMLRQYHLFEQLFPVIADRFTENNDSPMEK---IIEQVLKNTDFRLKNDKRVNP 376
Query: 243 SLWIAILAFH 252
+ A + ++
Sbjct: 377 AFLFAAMLWY 386
>gi|433473242|ref|ZP_20430606.1| poly(A) polymerase family protein [Neisseria meningitidis 97021]
gi|433481792|ref|ZP_20439057.1| poly(A) polymerase family protein [Neisseria meningitidis 2006087]
gi|433483777|ref|ZP_20441005.1| poly(A) polymerase family protein [Neisseria meningitidis 2002038]
gi|433485977|ref|ZP_20443178.1| poly(A) polymerase family protein [Neisseria meningitidis 97014]
gi|432210843|gb|ELK66799.1| poly(A) polymerase family protein [Neisseria meningitidis 97021]
gi|432217623|gb|ELK73491.1| poly(A) polymerase family protein [Neisseria meningitidis 2006087]
gi|432221480|gb|ELK77290.1| poly(A) polymerase family protein [Neisseria meningitidis 2002038]
gi|432223023|gb|ELK78805.1| poly(A) polymerase family protein [Neisseria meningitidis 97014]
Length = 453
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|329914129|ref|ZP_08276062.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480]
gi|327545195|gb|EGF30466.1| Poly(A) polymerase [Oxalobacteraceae bacterium IMCC9480]
Length = 455
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 104/198 (52%), Gaps = 13/198 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A ++V ++F + I+G+RF I HV F ++EV++F G
Sbjct: 66 LLGIKPKDFDIATNATPEQVRKLFRRAFIIGRRFQIVHVMFGQDLLEVTTFR--GASVDA 123
Query: 61 DFKYEFERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
K E R + G +D IR RDFTIN + +DP + + DY GG+ DIR
Sbjct: 124 APKDEHGRVLRDNTFGEQHEDAIR------RDFTINAMYYDPDTQTVLDYHGGMADIRNK 177
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + ++ED R+LR +R AA+L F TA +K ++P I + R+ EM
Sbjct: 178 TLRIIGVPEERYREDPVRLLRVVRFAAKLDFTIDAATAAPIKTMAPLINNVPAARVFDEM 237
Query: 176 NYMLAYGSAEASLRLLWK 193
+L G A A L L K
Sbjct: 238 LKLLMSGHAMACLHHLRK 255
>gi|385328165|ref|YP_005882468.1| putative poly(A) polymerase [Neisseria meningitidis alpha710]
gi|385342162|ref|YP_005896033.1| poly(A) polymerase [Neisseria meningitidis M01-240149]
gi|385856991|ref|YP_005903503.1| poly(A) polymerase [Neisseria meningitidis NZ-05/33]
gi|416172312|ref|ZP_11608729.1| poly(A) polymerase [Neisseria meningitidis OX99.30304]
gi|416188158|ref|ZP_11614627.1| poly(A) polymerase [Neisseria meningitidis M0579]
gi|308389017|gb|ADO31337.1| putative poly(A) polymerase [Neisseria meningitidis alpha710]
gi|325129986|gb|EGC52781.1| poly(A) polymerase [Neisseria meningitidis OX99.30304]
gi|325135941|gb|EGC58551.1| poly(A) polymerase [Neisseria meningitidis M0579]
gi|325202368|gb|ADY97822.1| poly(A) polymerase [Neisseria meningitidis M01-240149]
gi|325207880|gb|ADZ03332.1| poly(A) polymerase [Neisseria meningitidis NZ-05/33]
Length = 453
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++++LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSSKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|254672376|emb|CBA05629.1| poly(A) polymerase [Neisseria meningitidis alpha275]
Length = 362
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 124/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++++LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSSKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|170717755|ref|YP_001784822.1| poly(A) polymerase [Haemophilus somnus 2336]
gi|168825884|gb|ACA31255.1| poly(A) polymerase [Haemophilus somnus 2336]
Length = 457
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 126/250 (50%), Gaps = 6/250 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSF--STSGRR 57
+L + PKDFD+ T+A+ ++V +F QC +VG+RF + H+ F I+EV++F + +
Sbjct: 66 LLGKKPKDFDVATNAKPEQVQAIFQRQCRLVGRRFRLAHIMFGRDIIEVATFRAAHTDNH 125
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
R K + D ++ +RDFT+N ++P + DY GIED++ K+
Sbjct: 126 NERQAKQNNAGMLLRDNVYGTIEQDAERRDFTVNAFYYNPQNNTLRDYFNGIEDLKAGKL 185
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LR+IR A+L + + +K ++ + + RL E
Sbjct: 186 RLIGDPVKRYQEDPVRMLRSIRFMAKLDMFLDKPSQEPIKKMAHLLKNIPPARLFDESVK 245
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+L G + +LL ++GL + L P +Y +K ++++ ++ D+ +A +
Sbjct: 246 LLQAGYGIKTYQLLREYGLFDQLFPTLTSYFTDKADSFAEK---MIITALTSTDERVADN 302
Query: 238 RPCHSSLWIA 247
P + + A
Sbjct: 303 LPINPAFLFA 312
>gi|421554594|ref|ZP_16000535.1| poly(A) polymerase [Neisseria meningitidis 98008]
gi|402332554|gb|EJU67879.1| poly(A) polymerase [Neisseria meningitidis 98008]
Length = 453
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|37680945|ref|NP_935554.1| polyA polymerase [Vibrio vulnificus YJ016]
gi|37199695|dbj|BAC95525.1| polyA polymerase [Vibrio vulnificus YJ016]
Length = 463
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 131/269 (48%), Gaps = 20/269 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 73 LLGQSPKDFDIATNATPEQLKQLFRNCRLIGRRFRLAHIMFGREIIEVATF--------R 124
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
+ I K+ + R+ + +RDFTIN + ++ I+DY GG+ED
Sbjct: 125 GHHQDANSQISQQSKEGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGVED 184
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ V+ + T ++ED R+LRAIR AA+L F +TA ++ ++ + + RL
Sbjct: 185 LEDRLVRLIGDPETRYREDPVRMLRAIRFAAKLDFDIEEDTAAPIEEMAHLLRDIPAARL 244
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL---SLFS 228
E +L G + L+ ++ L + + P +AY + + ++ +L+L +
Sbjct: 245 YEESLKLLQSGHGLETYHLMREYNLFQQMFPAISAYFTEDYSSKAEQMLDLVLDSTDIRV 304
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALSD 257
K + P + LW +L L D
Sbjct: 305 EEGKRINPAYMFAAMLWYPLLELADKLMD 333
>gi|416162745|ref|ZP_11606812.1| poly(A) polymerase family protein [Neisseria meningitidis N1568]
gi|325127938|gb|EGC50840.1| poly(A) polymerase family protein [Neisseria meningitidis N1568]
Length = 374
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|421542245|ref|ZP_15988355.1| poly(A) polymerase [Neisseria meningitidis NM255]
gi|402318181|gb|EJU53706.1| poly(A) polymerase [Neisseria meningitidis NM255]
Length = 453
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAAHRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|328948217|ref|YP_004365554.1| poly(A) polymerase [Treponema succinifaciens DSM 2489]
gi|328448541|gb|AEB14257.1| poly(A) polymerase [Treponema succinifaciens DSM 2489]
Length = 374
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 13/209 (6%)
Query: 3 NRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDF 62
R PKDFDI+T A + ++F I+GKRF + HV F I EVS+F +
Sbjct: 63 GRTPKDFDIVTDATPSRIKKIFRNSRIIGKRFRLVHVFFGTKIFEVSTFRSI-------I 115
Query: 63 KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
G ++D +R RDFT+N L +DP + I DY+GG+EDI+K V+ VIP
Sbjct: 116 DGSIGNAFGSMDEDVLR------RDFTLNALYYDPLKQQIIDYVGGVEDIKKGIVKPVIP 169
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
F ED R++RA++ A G + S + ++ +P + + RL E ++ G
Sbjct: 170 IDRIFIEDPVRMIRAVKYGATTGCKLSHKLKKKIRISAPLLSPVSPSRLTEEFLKIINGG 229
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
+ + + L E L P + ++++
Sbjct: 230 HSFEIVNAALETDLYEYLQPAASNLILEN 258
>gi|261380692|ref|ZP_05985265.1| poly(A) polymerase [Neisseria subflava NJ9703]
gi|284796403|gb|EFC51750.1| poly(A) polymerase [Neisseria subflava NJ9703]
Length = 450
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 120/245 (48%), Gaps = 24/245 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFDI T A +++ ++F + I+G+RF I HV +EV++F +
Sbjct: 65 LLGVEPKDFDIATDATPEQIRKIFRRSRIIGRRFQIVHVMIGPETIEVTTFRGGDKVQQN 124
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R +D Y G E+D +R RDFT N L +DP + I+D+ G+ D+
Sbjct: 125 AQGRIMKDNTY------GSIEEDAMR------RDFTCNALYYDPIKEEIWDFHQGVADVA 172
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
K+ + + +QED RILRA+R++ +LGF +TA + + + RL
Sbjct: 173 DKKLVMIGNPAERYQEDPVRILRAVRLSGKLGFEVEEQTALPIAEYAGRLKNEPVARLFD 232
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ +L G + A L+ L + G+ E + P+ A DKR +++ N D+
Sbjct: 233 EIMKILFSGHSRACLKRLNELGIPEGIHPLLDALKTAEAA---DKR--MIMLALKNTDER 287
Query: 234 LAPDR 238
L D+
Sbjct: 288 LRADK 292
>gi|417850813|ref|ZP_12496638.1| poly(A) polymerase [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338220327|gb|EGP05863.1| poly(A) polymerase [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 424
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 15/221 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGR--- 56
+L + PKDFD+ T+A +++ +F QC +VG+RF + H+ F ++EV++F S
Sbjct: 31 LLGKHPKDFDVATNALPEQIQTIFQRQCRLVGRRFRLAHIMFGRDVIEVATFRASHNENN 90
Query: 57 -----RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ S++ + G E+D R RDFT+N L ++ + DY GIED
Sbjct: 91 HESLAKQSKEGMLLRDNVYGTLEQDAER------RDFTVNALYYNLQDNTLRDYFHGIED 144
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
++ K++ + +QED R+LR++R A+L + + ++ L+P + + RL
Sbjct: 145 LKAGKLRLIGDPVKRYQEDPVRMLRSVRFMAKLDMFLEKPSEQPIRELAPLLKNIPPARL 204
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
E +L G + +LL ++GL E L P Y + G
Sbjct: 205 FDECLKLLQAGYGVKTYKLLRQYGLFEQLFPSLMPYFTEKG 245
>gi|253689485|ref|YP_003018675.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|251756063|gb|ACT14139.1| poly(A) polymerase [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 482
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 115/224 (51%), Gaps = 18/224 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +V ++F C +VG+RF + H+ F ++EV++F
Sbjct: 85 LLGKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHDQHQE 144
Query: 56 RRFSRDFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
++ +++ + + + G E+D R RDF+IN L + + DY GG
Sbjct: 145 QQETKNSSQQAQSGMLLRDNIFGSVEEDAQR------RDFSINSLYYSIADFSVRDYTGG 198
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D+R+ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 199 LNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPA 258
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
R+ E +L G + ++L ++ L + L P+ + Y +G
Sbjct: 259 ARMFEESLKLLQSGHGYPTYKMLCEYQLFQPLFPLLSRYFTPNG 302
>gi|409404506|ref|ZP_11252985.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum sp.
GW103]
gi|386436025|gb|EIJ48848.1| tRNA nucleotidyltransferase/poly(A) polymerase [Herbaspirillum sp.
GW103]
Length = 537
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 105/194 (54%), Gaps = 5/194 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L PKDFD+ T+A ++V ++F + I+G+RF I HV F ++EV++F S
Sbjct: 84 LLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQELIEVTTFRGASAEAAP 143
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+D R E+ + +RDFTIN + +DP ++ + DY GGI DIR K++
Sbjct: 144 KDEHGRVLRDNTFGEQH----EDATRRDFTINAMYYDPASQAVLDYHGGIADIRDKKLRI 199
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ ++ED R+LR +R AA+L F ++ ++ ++P I + R+ EM +L
Sbjct: 200 IGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIRVMAPLIDNVPAARVFDEMLKLL 259
Query: 180 AYGSAEASLRLLWK 193
G A A L+ L K
Sbjct: 260 MSGHALACLQQLRK 273
>gi|326423862|ref|NP_760535.2| poly(A) polymerase [Vibrio vulnificus CMCP6]
gi|319999234|gb|AAO10062.2| Poly(A) polymerase [Vibrio vulnificus CMCP6]
Length = 453
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 131/269 (48%), Gaps = 20/269 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 63 LLGQSPKDFDIATNATPEQLKQLFRNCRLIGRRFRLAHIMFGREIIEVATF--------R 114
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
+ I K+ + R+ + +RDFTIN + ++ I+DY GG+ED
Sbjct: 115 GHHQDANSQISQQSKEGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGVED 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ V+ + T ++ED R+LRAIR AA+L F +TA ++ ++ + + RL
Sbjct: 175 LEDRLVRLIGDPETRYREDPVRMLRAIRFAAKLDFDIEEDTAAPIEEMAYLLRDIPAARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL---SLFS 228
E +L G + L+ ++ L + + P +AY + + ++ +L+L +
Sbjct: 235 YEESLKLLQSGHGLETYHLMREYNLFQQMFPAISAYFTEDYSSKAEQMLDLVLDSTDIRV 294
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALSD 257
K + P + LW +L L D
Sbjct: 295 EEGKRINPAYMFAAMLWYPLLELADKLMD 323
>gi|320155390|ref|YP_004187769.1| poly(A) polymerase [Vibrio vulnificus MO6-24/O]
gi|319930702|gb|ADV85566.1| poly(A) polymerase [Vibrio vulnificus MO6-24/O]
Length = 453
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 131/269 (48%), Gaps = 20/269 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 63 LLGQSPKDFDIATNATPEQLKQLFRNCRLIGRRFRLAHIMFGREIIEVATF--------R 114
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
+ I K+ + R+ + +RDFTIN + ++ I+DY GG+ED
Sbjct: 115 GHHQDANSQISQQSKEGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGVED 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ V+ + T ++ED R+LRAIR AA+L F +TA ++ ++ + + RL
Sbjct: 175 LEDRLVRLIGDPETRYREDPVRMLRAIRFAAKLDFDIEEDTAAPIEEMAYLLRDIPAARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL---SLFS 228
E +L G + L+ ++ L + + P +AY + + ++ +L+L +
Sbjct: 235 YEESLKLLQSGHGLETYHLMREYNLFQQMFPAISAYFTEDYSSKAEQMLDLVLDSTDIRV 294
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALSD 257
K + P + LW +L L D
Sbjct: 295 EEGKRINPAYMFAAMLWYPLLELADKLMD 323
>gi|392544371|ref|ZP_10291508.1| poly(A) polymerase [Pseudoalteromonas piscicida JCM 20779]
Length = 438
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 130/279 (46%), Gaps = 40/279 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
ML PKDFD++T+A +++ ++F C ++G+RF + H+ F I+EV++
Sbjct: 50 MLGIEPKDFDVVTNATPEQIKKLFRNCRLIGRRFRLAHIVFGREIIEVATMRGHHQSDDS 109
Query: 52 ------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDY 105
++ + RD Y G E+D R RDFTIN L + + D+
Sbjct: 110 CATTSQASEHGQLLRDNVY------GSIEEDAER------RDFTINALYYSINDFTLRDF 157
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ DI+ K++ + T ++ED +LRAIR A +L + T +K L+P +
Sbjct: 158 AGGVADIKARKIELIGDPETRYREDPVCMLRAIRFATKLDMEIATPTRTPIKALAPLLGH 217
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK--HGFRRRDKRSNLL 223
+ RL E + G AE + + ++GL L P L + + F RR +
Sbjct: 218 IPAARLFEETLKLFLNGKAEENFLQMREYGLFAQLFPALDKILAQPDNDFERR-----FI 272
Query: 224 LSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALS 256
+F+N D + D+ + LW ILA +AL+
Sbjct: 273 QQMFANTDSRINADKKVTPAFIYAALLWFPILAKSEALA 311
>gi|119773915|ref|YP_926655.1| tRNA nucleotidyltransferase [Shewanella amazonensis SB2B]
gi|119766415|gb|ABL98985.1| tRNA nucleotidyltransferase (CCA-adding enzyme) [Shewanella
amazonensis SB2B]
Length = 424
Score = 108 bits (269), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 145/293 (49%), Gaps = 25/293 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L PKDFD++T+A +++ ++F C +VG+RF + H+ F ++EV++F + G
Sbjct: 23 LLGLEPKDFDVVTNATPEDIKKLFRNCRLVGRRFRLAHIVFGRDVIEVATFRGHHGNEDG 82
Query: 56 RRFSR---DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ + + + G ++D R RDFT+N L +D I Y GG+ED+
Sbjct: 83 DKISKANAEGRLLRDNVYGSIDEDAER------RDFTVNALYYDISDYSIRSYGGGMEDL 136
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
++ + T ++ED R++RA+R A +LG R TA ++ L+P + + R+
Sbjct: 137 NDGVLRLIGDPETRYREDPVRMIRAVRFATKLGMRIEEVTAAPIRKLAPLLRDIPAARMY 196
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E+ + G +A+ +++ ++ L + P+ A + + NL++ N D
Sbjct: 197 EEVLKLFFAGKGQANYQMMQEYQLFAPIFPLLADTIADSPKGHCARMVNLVM---RNTDI 253
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNG-----GDMLE 280
+ D+P + + A L ++ S R + L++Y+ GD+LE
Sbjct: 254 RVMEDKPVTPAFFYAALLWYPLKS---RAEEIANESGLSLYDAYFAAMGDVLE 303
>gi|349573549|ref|ZP_08885527.1| poly(A) polymerase [Neisseria shayeganii 871]
gi|348014855|gb|EGY53721.1| poly(A) polymerase [Neisseria shayeganii 871]
Length = 502
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 18/239 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR--RFSRDFK 63
PKDFD+ T+A +EV ++F + I+G+RF I HV +EV++F GR R + +
Sbjct: 117 PKDFDVATNARPEEVRKIFRRSRIIGRRFQIVHVMVGPETIEVTTFRGGGRPARQNEHGR 176
Query: 64 YEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPA 123
+ G +D R RDFT N L ++P + I D+ G++DIR ++ + A
Sbjct: 177 IMQDNSYGTLAQDAER------RDFTCNALYYNPQRQEITDFHHGVDDIRAKRLVMIGDA 230
Query: 124 STSFQEDCARILRAIRIAARLGFRFSRETAHFVK---HLSPSILKLDRGRLLMEMNYMLA 180
+QED R+LRA R++ +LGF+ + +TA + HL P K RL E+ +L
Sbjct: 231 RERYQEDPVRMLRAARLSGKLGFQVAEDTAEPIAAQLHLLP---KEPLARLFDEVMKILF 287
Query: 181 YGSAEASLRLLWKFGL-LEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
GSAE LR L + + L P+ A L HG + + + L+L +N D+ L D+
Sbjct: 288 SGSAEDCLRQLKQLQMDARPLHPLLDAAL--HGLPPAGEHNMVSLAL-ANTDRRLKADQ 343
>gi|375106401|ref|ZP_09752662.1| poly(A) polymerase [Burkholderiales bacterium JOSHI_001]
gi|374667132|gb|EHR71917.1| poly(A) polymerase [Burkholderiales bacterium JOSHI_001]
Length = 540
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 136/280 (48%), Gaps = 37/280 (13%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHV----HFENTIVEVSSFSTSGR 56
++ PKDFD+ T+A ++V +F + I+G+RF I HV ++ ++EVS+F R
Sbjct: 71 LVGHRPKDFDVATNATPEQVKGLFRRAFIIGRRFRIVHVIHGRGRDHEVIEVSTF----R 126
Query: 57 RFSRDFKYEFERPIGCDEK----DFIR----------------W----RNCLQRDFTING 92
F E + +EK D + W + +RDFT+N
Sbjct: 127 AF---LDAEQADTVAGNEKTSRADLVGKSHVVDASGRVLRDNVWGPQIEDAARRDFTVNA 183
Query: 93 LMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRET 152
+ +DP +++ DY GGI+D +K ++ + +T ++ED RI+RA+R AA+LGF ++
Sbjct: 184 MYYDPQTQVVVDYHGGIKDAKKRVLRMIGDPATRYREDPVRIIRAVRFAAKLGFELEPKS 243
Query: 153 AHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
A + + + + R+ EM +L G A +S++ L K+GL + PI A +
Sbjct: 244 AAPIAEATKLLANVPVSRMFDEMIKLLQTGHALSSVQALRKYGLHRGVFPILDAIYDEE- 302
Query: 213 FRRRDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
R +R + ++ D+ + R S +A L +H
Sbjct: 303 -RSSVERQAFINQALADTDRRVEEGRAVAPSFMLACLLWH 341
>gi|388602361|ref|ZP_10160757.1| poly(A) polymerase [Vibrio campbellii DS40M4]
Length = 441
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 117/233 (50%), Gaps = 14/233 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 51 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQKN 110
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ K + G ++D R RDFTIN + ++ I+DY GIED+
Sbjct: 111 KNVSQQSKEGMLLRDNVYGTIDEDAER------RDFTINSMYYNIADYSIHDYARGIEDL 164
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
V+ + T ++ED R+LRAIR A +L F +TA ++ ++P + + RL
Sbjct: 165 EDRLVRLIGDPETRYREDPVRMLRAIRFAVKLDFDIEEDTAAPIEEMAPLLRDIPSARLF 224
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
E ML G + LL ++ L + L P A + + D+ +L+L
Sbjct: 225 EESLKMLQSGHGLETYHLLREYNLFQQLFPAIAEHFTEDYESHTDQMLDLVLD 277
>gi|349609232|ref|ZP_08888635.1| hypothetical protein HMPREF1028_00610 [Neisseria sp. GT4A_CT1]
gi|348612739|gb|EGY62352.1| hypothetical protein HMPREF1028_00610 [Neisseria sp. GT4A_CT1]
Length = 456
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 26/246 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFDI T A ++V ++F + I+G+RF I HV +EV++F G+
Sbjct: 66 LLGVEPKDFDIATDATPEQVHKIFRRSRIIGRRFQIVHVMVGPETIEVTTFRGGGKVQQN 125
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R +D Y G E+D +R RDFT N L +DP + I D+ G+ DI
Sbjct: 126 AHGRIMKDNTY------GSMEEDAMR------RDFTCNALYYDPIKEEIIDFHHGVGDIA 173
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
K+ + A+ +QED RILRA+R++ +LGF TA + + + RL
Sbjct: 174 DRKLVMIGNAAERYQEDPVRILRAVRLSGKLGFDVEENTAAPIPEQAGRLKHEPVARLFD 233
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDK 232
E+ +L G A L+ L G+ + + P+ A + K N ++SL N D+
Sbjct: 234 EIMKLLFSGYARECLKRLNSLGVSDDVHPLLTA------LKSATKPENRIISLALKNTDE 287
Query: 233 LLAPDR 238
L D+
Sbjct: 288 RLRADK 293
>gi|421563059|ref|ZP_16008881.1| poly(A) polymerase [Neisseria meningitidis NM2795]
gi|421906626|ref|ZP_16336519.1| poly(A) polymerase [Neisseria meningitidis alpha704]
gi|393292374|emb|CCI72460.1| poly(A) polymerase [Neisseria meningitidis alpha704]
gi|402341766|gb|EJU76939.1| poly(A) polymerase [Neisseria meningitidis NM2795]
Length = 453
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 119/253 (47%), Gaps = 24/253 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ A+ +QED RILRAIR++ +LGF S ET + S+ RL E+ +
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEETTAPIAESICSLKHEPVARLFDEIMKL 238
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
L G A L+ L F + + + P+ A V G + + N D+ L D+
Sbjct: 239 LFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLRADK 293
Query: 239 PCHSSLWIAILAF 251
+A L +
Sbjct: 294 SVSVGFVLAALMW 306
>gi|338998842|ref|ZP_08637503.1| poly(A) polymerase [Halomonas sp. TD01]
gi|338764224|gb|EGP19195.1| poly(A) polymerase [Halomonas sp. TD01]
Length = 461
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 140/302 (46%), Gaps = 24/302 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L ++PKDFD+ T+A ++V +F ++G+RF I HV F ++EV++F +
Sbjct: 76 LLGKMPKDFDVATNATPEQVRDLFRNSRLIGRRFRIVHVRFGREVIEVTTFRGKPQDEHG 135
Query: 61 DFKYEFERPIGCDEKDFIR---WRN----CLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D + D+ +R W N L+RDFT+N L ++ I+D+ G DI
Sbjct: 136 DHIAQ-----QSDDGLLLRDNVWGNIEEDALRRDFTVNALYYNIADFTIHDFANGARDIE 190
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LRA+R AA+L F T + L+P +L++ RL
Sbjct: 191 SRTLRLIGDPVTRYREDPVRMLRAVRFAAKLDFTIEPATEEPMYDLAPLLLQIPPARLFD 250
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G + RLL + L +L P + +L+ +N DK
Sbjct: 251 EVLKLFMSGHGLITFRLLSHYNLFGMLFPEAEEAMADA-----AWAEDLIEQALTNTDKR 305
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARR 287
+A RP + LW A +A +A ++ P + A+ + A L+ + I +R
Sbjct: 306 IAEGRPVTPAFLLAAFLW-APVAHRQAELEREGMPAIPALQTAAQQVVTRQLQHISIPKR 364
Query: 288 IN 289
Sbjct: 365 FG 366
>gi|254253161|ref|ZP_04946479.1| Poly(A) polymerase [Burkholderia dolosa AUO158]
gi|124895770|gb|EAY69650.1| Poly(A) polymerase [Burkholderia dolosa AUO158]
Length = 578
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 155 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPA 214
Query: 54 -----SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
RR RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 215 AADAEPPRRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 270
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ D+R ++ + +T F+ED R+LR +R AA+LGF T +
Sbjct: 271 TQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPIHA 330
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 331 LADLINNVPAARLFDEMLKLLLSGHALACLQRLRK 365
>gi|421540019|ref|ZP_15986172.1| poly(A) polymerase [Neisseria meningitidis 93004]
gi|402320303|gb|EJU55794.1| poly(A) polymerase [Neisseria meningitidis 93004]
Length = 453
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ET ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEET---TAPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|256821580|ref|YP_003145543.1| poly(A) polymerase [Kangiella koreensis DSM 16069]
gi|256795119|gb|ACV25775.1| poly(A) polymerase [Kangiella koreensis DSM 16069]
Length = 456
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 125/253 (49%), Gaps = 9/253 (3%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST---SGRRFSRDF 62
PKDFDI T+A +++ +F C I+G+RF + H+ F ++EV++F + +++
Sbjct: 75 PKDFDIATNATPEQIKELFRNCRIIGRRFRLAHILFGRDVIEVATFRAHCDDNIQQAKEG 134
Query: 63 KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
+ G E+D IR RDFTIN L ++ ++D+ G+ D+RK +++ +
Sbjct: 135 MILRDNVYGDIEEDAIR------RDFTINALYYNIKDFSVHDFCDGLADLRKRQLRMIGD 188
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
T ++ED R+LRA+R+A +L T V LS + ++ RL E + G
Sbjct: 189 PETRYREDPVRMLRAVRLACKLNLTIEPNTLKPVAELSHFLEQVPAARLWEEYRKLFLAG 248
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHS 242
+A+ + + L ++GL L P L + L+L N D +A ++ +
Sbjct: 249 AAKLTFQKLREYGLFHALFPATDRALKHDDETQTQAIEQLVLDALENTDTRIASEQTVNP 308
Query: 243 SLWIAILAFHKAL 255
+ +A++ + L
Sbjct: 309 AFLMAVMLWQPLL 321
>gi|445499484|ref|ZP_21466339.1| poly(A) polymerase PcnB [Janthinobacterium sp. HH01]
gi|444789479|gb|ELX11027.1| poly(A) polymerase PcnB [Janthinobacterium sp. HH01]
Length = 469
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 103/198 (52%), Gaps = 13/198 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A ++V R+F + I+GKRF I HV F ++EV++F G
Sbjct: 66 LLGVKPKDFDIATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQDLLEVTTFR--GTTLDN 123
Query: 61 DFKYEFERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
K E R + G +D +R RDFTIN + ++P + + DY GGIEDIR
Sbjct: 124 APKDEHGRVLRDNTFGSQAEDAVR------RDFTINAMYYNPANQQVLDYHGGIEDIRAK 177
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + ++ED R+LR +R AA+L F T + ++ I + R+ EM
Sbjct: 178 TLRIIGQPEARYREDPVRMLRVVRFAAKLKFTIEPNTGAPIAVMASLIDNVPAARVFDEM 237
Query: 176 NYMLAYGSAEASLRLLWK 193
+L G A A L+ L K
Sbjct: 238 LKLLMSGQALACLQQLRK 255
>gi|410664012|ref|YP_006916383.1| polynucleotide adenylyltransferase [Simiduia agarivorans SA1 = DSM
21679]
gi|409026369|gb|AFU98653.1| polynucleotide adenylyltransferase [Simiduia agarivorans SA1 = DSM
21679]
Length = 451
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 123/243 (50%), Gaps = 24/243 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A ++V +F I+G+RF I HV ++EV++F R
Sbjct: 65 LLGGHPKDFDLATNATPEQVKALFRGARIIGRRFKIVHVRMGRELLEVTTF--------R 116
Query: 61 DFKYEFERPIGCDEKD---FIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
D E E + D +R + +RDFTIN L + ++DY GG++
Sbjct: 117 DNHSEAENERDSHQADSGMLLRDNVFGTLETDSARRDFTINALYYTSQDFTVHDYEGGMK 176
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+ +V+ + T ++ED R+LRA+R AA+LGF+ + TA + + + ++ R
Sbjct: 177 DLEARQVRMIGDPLTRYKEDPVRMLRAVRFAAKLGFKIEKHTASPIAPNAALLSQVSSSR 236
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSN 229
L E + GSA A+ +LL + LL L P Q L+K G D+++ L+ L N
Sbjct: 237 LFDESLKLFMAGSALATFQLLRDYDLLAHLFP-QTDALLKQG----DEQAEKLIELALIN 291
Query: 230 LDK 232
DK
Sbjct: 292 TDK 294
>gi|421480461|ref|ZP_15928084.1| poly(A) polymerase [Burkholderia multivorans CF2]
gi|400221019|gb|EJO51508.1| poly(A) polymerase [Burkholderia multivorans CF2]
Length = 512
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPE 156
Query: 52 ---STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+ RR RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 AATAEPPRRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 212
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T +
Sbjct: 213 TQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIEPHTREPINA 272
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 LADLINNVPAARLFDEMLKLLLSGHALACLQRLRK 307
>gi|340789021|ref|YP_004754486.1| poly(A) polymerase [Collimonas fungivorans Ter331]
gi|340554288|gb|AEK63663.1| Poly(A) polymerase [Collimonas fungivorans Ter331]
Length = 463
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 103/196 (52%), Gaps = 9/196 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---STSGRR 57
+L PKDFD+ T+A ++V R+F + I+GKRF I HV F ++EV++F S+ G
Sbjct: 64 LLGVKPKDFDVATNATPEQVKRLFRRAFIIGKRFQIVHVMFGQELIEVTTFRGASSDGSP 123
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ + G +D +R RDFTIN + +DP + + DY GGI+DIR +
Sbjct: 124 KDEHGRVLRDNTFGEQHEDAVR------RDFTINAMYYDPATESVLDYHGGIDDIRAKTL 177
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + F+ED R+LR +R AA+L F T + ++ I + R+ EM
Sbjct: 178 RIIGEPEARFREDPIRMLRIVRFAAKLKFTIDPATRAPIPVMAALIDNVPAARVFDEMLK 237
Query: 178 MLAYGSAEASLRLLWK 193
+L G A A L+ L K
Sbjct: 238 LLMSGHALACLQQLRK 253
>gi|156975713|ref|YP_001446620.1| nucleotidyltransferase/poly(A) polymerase [Vibrio harveyi ATCC
BAA-1116]
gi|156527307|gb|ABU72393.1| hypothetical protein VIBHAR_03448 [Vibrio harveyi ATCC BAA-1116]
Length = 462
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 14/218 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 65 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQKN 124
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ K + G ++D R RDFTIN + ++ I+DY GIED+
Sbjct: 125 KNVSQQSKEGMLLRDNVYGTIDEDAER------RDFTINSMYYNIADYSIHDYARGIEDL 178
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
V+ + T ++ED R+LRAIR A +L F +TA ++ ++P + + RL
Sbjct: 179 EDRLVRLIGDPETRYREDPVRMLRAIRFAVKLDFDIEEDTAAPIEEMAPLLRDIPSARLF 238
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E ML G + LL ++ L + L P A + +
Sbjct: 239 EESLKMLQSGHGLETYHLLREYNLFQQLFPAIAEHFTE 276
>gi|330836498|ref|YP_004411139.1| poly(A) polymerase [Sphaerochaeta coccoides DSM 17374]
gi|329748401|gb|AEC01757.1| poly(A) polymerase [Sphaerochaeta coccoides DSM 17374]
Length = 443
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 10/208 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
++ +PKDFDI T+A ++V R+F I+GKRF + H+ F + I+EVS+F S +
Sbjct: 61 LVGHVPKDFDIATNASPRQVQRMFWNARIIGKRFKLVHLVFNDKILEVSTFR-SDEEMAE 119
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D G E+D R RDFTIN L +DP + D+ ++D +K +++++
Sbjct: 120 DGSNNV---FGTIEQDARR------RDFTINALYYDPMTGHLLDFNDSLQDFKKKRIRSL 170
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
IP +F ED R++RAI+ A F ++ S + + RL E+N +LA
Sbjct: 171 IPLKETFIEDPVRMIRAIKYAVSTDFSLPLSLRMAIRSHSRELSRASVSRLTEEVNKILA 230
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYL 208
G + R L + LL +LP A ++
Sbjct: 231 SGVSARIFRKLKDYQLLGYMLPGIAPHI 258
>gi|221200986|ref|ZP_03574026.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2M]
gi|221206562|ref|ZP_03579575.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2]
gi|421473796|ref|ZP_15921879.1| poly(A) polymerase [Burkholderia multivorans ATCC BAA-247]
gi|221173871|gb|EEE06305.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2]
gi|221178836|gb|EEE11243.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD2M]
gi|400220196|gb|EJO50750.1| poly(A) polymerase [Burkholderia multivorans ATCC BAA-247]
Length = 512
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPE 156
Query: 52 ---STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+ RR RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 AATAEPPRRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 212
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T +
Sbjct: 213 TQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIEPHTREPINA 272
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 LADLINNVPAARLFDEMLKLLLSGHALACLQRLRK 307
>gi|359443762|ref|ZP_09233583.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20429]
gi|392535129|ref|ZP_10282266.1| poly(A) polymerase [Pseudoalteromonas arctica A 37-1-2]
gi|358034318|dbj|GAA69832.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20429]
Length = 493
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 130/271 (47%), Gaps = 20/271 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD++T+A +V ++F C ++G+RF + H+ F I+EV++ G ++
Sbjct: 106 LLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVATMR--GHHEAQ 163
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ K + + DE +R + +RDF+IN L + I+DY G+ I+
Sbjct: 164 EDKNQISQ--SSDEGQLLRDNVFGSIEEDAERRDFSINALYYSIKDFSIHDYANGLAAIK 221
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+++ + T ++ED R+LRA+R A +L + ++ + L+ + + RL
Sbjct: 222 AKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPKSEKPISELASLLDNIPPARLFE 281
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G AEA+ +L K+GL L P L K+ L+ +F N DK
Sbjct: 282 EILKLFLNGKAEANFLMLRKYGLFRSLFPELDKILDKNP---SGLEHTLIQQMFQNTDKR 338
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQ 258
+ D+ + LW +L K + Q
Sbjct: 339 INADKKVTPAFIFAALLWFPLLERTKKIQSQ 369
>gi|221214419|ref|ZP_03587390.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD1]
gi|221165676|gb|EED98151.1| poly(A) polymerase (PAP) (Plasmid copy number protein)
[Burkholderia multivorans CGD1]
Length = 512
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPE 156
Query: 52 ---STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+ RR RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 AATAEPPRRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 212
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T +
Sbjct: 213 TQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIEPHTREPINA 272
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 LADLINNVPAARLFDEMLKLLLSGHALACLQRLRK 307
>gi|421567280|ref|ZP_16013016.1| poly(A) polymerase [Neisseria meningitidis NM3001]
gi|402344291|gb|EJU79432.1| poly(A) polymerase [Neisseria meningitidis NM3001]
Length = 453
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ET ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEET---TAPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|421550390|ref|ZP_15996395.1| poly(A) polymerase [Neisseria meningitidis 69166]
gi|433471140|ref|ZP_20428531.1| poly(A) polymerase family protein [Neisseria meningitidis 68094]
gi|433477325|ref|ZP_20434648.1| poly(A) polymerase family protein [Neisseria meningitidis 70012]
gi|433521667|ref|ZP_20478362.1| poly(A) polymerase family protein [Neisseria meningitidis 61103]
gi|433525857|ref|ZP_20482491.1| poly(A) polymerase family protein [Neisseria meningitidis 69096]
gi|433538717|ref|ZP_20495197.1| poly(A) polymerase family protein [Neisseria meningitidis 70030]
gi|402330605|gb|EJU65952.1| poly(A) polymerase [Neisseria meningitidis 69166]
gi|432209629|gb|ELK65596.1| poly(A) polymerase family protein [Neisseria meningitidis 68094]
gi|432216547|gb|ELK72428.1| poly(A) polymerase family protein [Neisseria meningitidis 70012]
gi|432260440|gb|ELL15699.1| poly(A) polymerase family protein [Neisseria meningitidis 61103]
gi|432262048|gb|ELL17293.1| poly(A) polymerase family protein [Neisseria meningitidis 69096]
gi|432274725|gb|ELL29812.1| poly(A) polymerase family protein [Neisseria meningitidis 70030]
Length = 453
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ET ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEET---TAPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|418288057|ref|ZP_12900577.1| poly(A) polymerase [Neisseria meningitidis NM233]
gi|418290317|ref|ZP_12902481.1| poly(A) polymerase [Neisseria meningitidis NM220]
gi|372201804|gb|EHP15685.1| poly(A) polymerase [Neisseria meningitidis NM220]
gi|372202660|gb|EHP16441.1| poly(A) polymerase [Neisseria meningitidis NM233]
Length = 477
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + IVG+RF I HV I+EV++F + R
Sbjct: 95 PKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 154
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 155 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 202
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ET ++ SI +L RL E+
Sbjct: 203 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEET---TAPIAESICRLKHEPVARLFDEI 259
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 260 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 314
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 315 ADKSVSVGFVLAALMW 330
>gi|254482604|ref|ZP_05095843.1| poly(A) polymerase subfamily protein [marine gamma proteobacterium
HTCC2148]
gi|214037295|gb|EEB77963.1| poly(A) polymerase subfamily protein [marine gamma proteobacterium
HTCC2148]
Length = 432
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 146/310 (47%), Gaps = 32/310 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFDI T A +EV +F I+G+RF I HV F I+EV++F
Sbjct: 45 LLGSNPKDFDIATDATPEEVHGLFRNSRIIGRRFRIVHVRFGREIIEVTTFRGHHEGGNE 104
Query: 52 --STSGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYI 106
+G SR + G E+D +R RD T+N L +D ++D++
Sbjct: 105 ASPATGGNHSRQSDKGLLLRDNVYGTLEEDAVR------RDLTVNALYYDSGKFEVFDHV 158
Query: 107 GGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKL 166
G+ D+ K ++ + + ++ED R+LR +R AA+L F + TA + + + ++
Sbjct: 159 NGLTDLEKRQICIIGEPAVRYREDPVRMLRTVRFAAKLNFDIEKNTAKAIPACAALLREI 218
Query: 167 DRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRS-NLLLS 225
RL E + G A A+L L + LL+ L + ++L+ +D S L+ +
Sbjct: 219 PSARLFDEFLKLFLSGYAAATLEQLLEHDLLQFLFD-ETSHLLH-----QDAMSLALVRA 272
Query: 226 LFSNLDKLLAPDRPCHSSLWIAILAF-----HKALSDQPRDPLVVAVFSLAVYNGGDMLE 280
+N DK +A D+P + +A L + A + DP +VA+ + + + +
Sbjct: 273 AMANTDKRIADDKPVTPAFILAALLWPVVVRTAAQQENRGDPPMVAMHNASQQTISEASQ 332
Query: 281 AVKIARRINK 290
+ I RR ++
Sbjct: 333 QLSIPRRFSQ 342
>gi|340362383|ref|ZP_08684770.1| poly(A) polymerase [Neisseria macacae ATCC 33926]
gi|419796404|ref|ZP_14321948.1| poly(A) polymerase [Neisseria sicca VK64]
gi|339887488|gb|EGQ77040.1| poly(A) polymerase [Neisseria macacae ATCC 33926]
gi|385699530|gb|EIG29823.1| poly(A) polymerase [Neisseria sicca VK64]
Length = 456
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 119/246 (48%), Gaps = 26/246 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFDI T A ++V ++F + I+G+RF I HV +EV++F G+
Sbjct: 66 LLGVEPKDFDIATDATPEQVHKIFRRSRIIGRRFQIVHVMVGPETIEVTTFRGGGKVQQN 125
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R +D Y G E+D +R RDFT N L +DP + I D+ G+ DI
Sbjct: 126 AHGRIMKDNTY------GSMEEDAMR------RDFTCNALYYDPIKEEIIDFHHGVGDIA 173
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
K+ + A+ +QED RILRA+R++ +LGF TA + + + RL
Sbjct: 174 DRKLVMIGNAAERYQEDPVRILRAVRLSGKLGFDVEENTAAPIPEQAGRLKHEPVARLFD 233
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDK 232
E+ +L G A L+ L G+ + + P+ A + K N ++SL N D+
Sbjct: 234 EIMKLLFSGYARECLKRLNSLGVSDDVHPLLTA------LKSAAKPENRIISLALKNTDE 287
Query: 233 LLAPDR 238
L D+
Sbjct: 288 RLRADK 293
>gi|416178572|ref|ZP_11610623.1| poly(A) polymerase [Neisseria meningitidis M6190]
gi|416192603|ref|ZP_11616709.1| poly(A) polymerase [Neisseria meningitidis ES14902]
gi|433468985|ref|ZP_20426414.1| poly(A) polymerase family protein [Neisseria meningitidis 98080]
gi|433492331|ref|ZP_20449425.1| poly(A) polymerase family protein [Neisseria meningitidis NM586]
gi|433494408|ref|ZP_20451478.1| poly(A) polymerase family protein [Neisseria meningitidis NM762]
gi|433496592|ref|ZP_20453633.1| poly(A) polymerase family protein [Neisseria meningitidis M7089]
gi|433498652|ref|ZP_20455661.1| poly(A) polymerase family protein [Neisseria meningitidis M7124]
gi|433500620|ref|ZP_20457606.1| poly(A) polymerase family protein [Neisseria meningitidis NM174]
gi|433502803|ref|ZP_20459768.1| poly(A) polymerase family protein [Neisseria meningitidis NM126]
gi|325132016|gb|EGC54714.1| poly(A) polymerase [Neisseria meningitidis M6190]
gi|325137770|gb|EGC60345.1| poly(A) polymerase [Neisseria meningitidis ES14902]
gi|432205378|gb|ELK61408.1| poly(A) polymerase family protein [Neisseria meningitidis 98080]
gi|432229120|gb|ELK84813.1| poly(A) polymerase family protein [Neisseria meningitidis NM586]
gi|432231082|gb|ELK86752.1| poly(A) polymerase family protein [Neisseria meningitidis NM762]
gi|432234486|gb|ELK90106.1| poly(A) polymerase family protein [Neisseria meningitidis M7124]
gi|432235292|gb|ELK90908.1| poly(A) polymerase family protein [Neisseria meningitidis M7089]
gi|432235911|gb|ELK91520.1| poly(A) polymerase family protein [Neisseria meningitidis NM174]
gi|432240899|gb|ELK96430.1| poly(A) polymerase family protein [Neisseria meningitidis NM126]
Length = 453
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ET ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEET---TAPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|344339516|ref|ZP_08770445.1| poly(A) polymerase [Thiocapsa marina 5811]
gi|343800820|gb|EGV18765.1| poly(A) polymerase [Thiocapsa marina 5811]
Length = 455
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 122/254 (48%), Gaps = 11/254 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---STSGRR 57
+L PKDFD+ T A ++V +VF C ++G+RF + HVHF I+EV++F + +
Sbjct: 61 LLGHEPKDFDVATDATPEQVRQVFRNCRLIGRRFRLAHVHFGREIIEVATFRGTTVASEG 120
Query: 58 FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D + E R + + I + L+RDFT+N L ++ + DY G+EDI+ ++
Sbjct: 121 DDNDRQMENGRILRDNTYGTIA-EDALRRDFTVNALYYNIADFSLIDYADGLEDIKAGRL 179
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + ++ED R+LRA+R A +LGF R+T + +L+ + + RL E+
Sbjct: 180 RLIGDPEQRYREDPVRMLRAVRFACKLGFTIERQTEEPLFNLAHLLADIAPARLFDELIK 239
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK--HGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G L ++GL L P L + GF + +N DK L
Sbjct: 240 LFHSGYGLGVFEKLRQYGLFGELFPATEDCLAREDQGF-----PLTFVSRGLANTDKRLH 294
Query: 236 PDRPCHSSLWIAIL 249
D+ + +L
Sbjct: 295 EDKSVTPAFLFGVL 308
>gi|406914482|gb|EKD53652.1| hypothetical protein ACD_60C00162G0007 [uncultured bacterium]
Length = 447
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 121/264 (45%), Gaps = 30/264 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRR--- 57
+L R PKDFDI T+A ++V ++F C ++GKRF + H+ F I+EV++F T +
Sbjct: 66 LLKRRPKDFDIATNARPEDVRKLFKNCRLIGKRFRLAHILFGREIIEVATFRTHHEKAPE 125
Query: 58 ---------FSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
RD Y G E D WR RDFTIN L ++ + DY+ G
Sbjct: 126 LQGKMHHGMIVRDNVY------GTIEDD--AWR----RDFTINALYYNIANFSVVDYVDG 173
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ DI+ ++ + F ED R+LRA R +L S ET H + LS + +
Sbjct: 174 MHDIKARLLRIIGEPEQRFHEDPVRLLRAARFIGKLNLTVSPETEHTLNQLSHLLQNVSP 233
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E+ G+ + +L K+ L E L AA L R K+ L+
Sbjct: 234 ARLFQEVLKFFQEGATVETFHVLQKYHLFEQLFSQTAACLAD----RHTKK--LIEEALH 287
Query: 229 NLDKLLAPDRPCHSSLWIAILAFH 252
+ D+ + ++ + +A+ +H
Sbjct: 288 STDQRIQEEKTVSPAFLLAVFLWH 311
>gi|347540792|ref|YP_004848217.1| poly(A) polymerase [Pseudogulbenkiania sp. NH8B]
gi|345643970|dbj|BAK77803.1| poly(A) polymerase [Pseudogulbenkiania sp. NH8B]
Length = 392
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 11/253 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+ PKDFD+ TSA ++V +F + I+G+RF I HV +EV++F R S
Sbjct: 5 LLDVNPKDFDVATSATPEQVHHLFRRSRIIGRRFKIVHVMVGPETIEVTTF----RGGSI 60
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D E R I D + + +RDFT+N L +DP + I DY G++D++ K+ +
Sbjct: 61 DDTNETGR-IMADNSYGSQEEDAHRRDFTVNALFYDPSDESIVDYHHGVKDLQARKLVMI 119
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+ +QED R+LRA+R+AA+L F T ++ + + K RL EM +L
Sbjct: 120 GQPARRYQEDPVRMLRAVRLAAKLNFEIDENTRKPIRAHAHLLKKEPPARLFDEMLKLLM 179
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G A + L L + GL + P+ A L + G K L L L S D + D+P
Sbjct: 180 SGQAYSCLCKLREEGLSRGVFPLLDAVLDEEG-----KDEFLRLGLQST-DVRIREDKPV 233
Query: 241 HSSLWIAILAFHK 253
+A L + +
Sbjct: 234 SVGFLLATLLWRQ 246
>gi|302338419|ref|YP_003803625.1| poly(A) polymerase [Spirochaeta smaragdinae DSM 11293]
gi|301635604|gb|ADK81031.1| poly(A) polymerase [Spirochaeta smaragdinae DSM 11293]
Length = 393
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 124/235 (52%), Gaps = 32/235 (13%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF-ENTIVEVSSFSTSGRRFSRDFKY 64
PKDFDI TSA K+V ++F I+G+RF + HVH+ I+EVS+F T D +
Sbjct: 66 PKDFDIATSAYPKQVRKLFRNSRIIGRRFRLVHVHYGSGKIIEVSTFRTD------DEEG 119
Query: 65 EFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAS 124
G E D R RDF++N L FDP I D++ G++D+R K+++++P
Sbjct: 120 NSNNVFGTLEDDVKR------RDFSVNALYFDPQKLHIIDFVDGVKDVRAGKMKSLLPLD 173
Query: 125 TSFQEDCARILRAIRIAA----RLGFRFSRETAHFVKHLS--PSILKLDRGRLLMEMNYM 178
+F++D R++RAI+ + R+G++ R A V L PS R+ E+ +
Sbjct: 174 RTFKDDPVRMIRAIKYSTGGGFRMGWKLRRAIARHVDELERCPS------SRMTEEVFKV 227
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
LA G + + K GL +LP + L+K G DK+ L + F++L++L
Sbjct: 228 LASGRSALLIDEFLKTGLFRHMLP-RIDSLLKSG----DKK--LRGAFFASLEEL 275
>gi|386311398|ref|YP_006007454.1| poly(A) polymerase [Yersinia enterocolitica subsp. palearctica Y11]
gi|418240013|ref|ZP_12866556.1| poly(A) polymerase I [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|318607077|emb|CBY28575.1| poly(A) polymerase [Yersinia enterocolitica subsp. palearctica Y11]
gi|330859189|emb|CBX69540.1| poly(A) polymerase [Yersinia enterocolitica W22703]
gi|351780516|gb|EHB22586.1| poly(A) polymerase I [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
Length = 478
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 133/279 (47%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 83 LLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 136
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 137 ---HEQQQTEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQRRDFTINSLYYGISDFALRDY 193
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 194 TGGLRDLKEGIIRLIGSPETRYREDPVRMLRAVRFAAKLDMTISPETAEPIPRLASLLHE 253
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A +H ++ +L+
Sbjct: 254 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEHHDSAMER---ILVQ 310
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 311 VLKNTDHRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 349
>gi|167563975|ref|ZP_02356891.1| polyA polymerase [Burkholderia oklahomensis EO147]
gi|167571119|ref|ZP_02363993.1| polyA polymerase [Burkholderia oklahomensis C6786]
Length = 521
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 27/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A +V +F + ++G+RF I HV F ++EVS+F
Sbjct: 104 LLGIAPKDFDVATDATPTQVQHLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPQE 163
Query: 52 ----STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDP 97
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 164 PPAETAPAKRMKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDP 219
Query: 98 YAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVK 157
+ + DY G+ D+R ++ + T F+ED R+LR +R AA+LGF T +K
Sbjct: 220 ATQTVLDYHDGMADMRARLLRMIGDPVTRFREDPVRMLRVVRFAAKLGFEIEENTRAPIK 279
Query: 158 HLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A LR L K
Sbjct: 280 ELADLINNVPAARLFDEMLKLLLSGHALACLRQLRK 315
>gi|269214303|ref|ZP_05986289.2| poly(A) polymerase [Neisseria lactamica ATCC 23970]
gi|269210162|gb|EEZ76617.1| poly(A) polymerase [Neisseria lactamica ATCC 23970]
Length = 469
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 31/256 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV +EV++F + R
Sbjct: 89 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAETIEVTTFRGGAKVQQNARGRI 148
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y IG D ++RDFT N L +DP + I D+ G+ DI ++
Sbjct: 149 MKDNTYG---SIGED---------AMRRDFTCNALYYDPETEEILDFHNGVADIAARRLV 196
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF+ S ETA ++ SI +L RL E+
Sbjct: 197 MIGDAAERYQEDPVRILRAIRLSGKLGFKLSEETA---APIAESICRLKHEPVARLFDEI 253
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A A L++L +F + P+ A V G + S N D+ L
Sbjct: 254 MKLLFSGHAAACLQVLRRFDCTGI-HPLLDALGVSDGI-----AGKMTASALKNTDERLR 307
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 308 ADKSVSVGFVLAALMW 323
>gi|86148287|ref|ZP_01066582.1| polyA polymerase [Vibrio sp. MED222]
gi|85833912|gb|EAQ52075.1| polyA polymerase [Vibrio sp. MED222]
Length = 451
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 111/211 (52%), Gaps = 1/211 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A +++ +F C ++G+RF + H+ F I+EV++F + S+
Sbjct: 63 LLGSQPKDFDIATNATPEQIKHLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSK 122
Query: 61 DFKYEFERPIGCDEKDFIRW-RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + E + + + + +RDFTIN + ++ I+DY GG+ED+ ++
Sbjct: 123 NVSAQSEEGMLLRDNVYGNVDEDAERRDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRL 182
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ T ++ED R+LRA+R AA+L F +TA ++ L+ + + RL E +L
Sbjct: 183 IGDPETRYREDPVRMLRAMRFAAKLDFDIEEDTADPIEELAHLLKDIPAARLYEESLKLL 242
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
G + L+ ++ L + + P A + +
Sbjct: 243 QSGHGLETYHLMREYNLFQQMFPSVAEHFTE 273
>gi|416213874|ref|ZP_11622567.1| poly(A) polymerase [Neisseria meningitidis M01-240013]
gi|325144127|gb|EGC66434.1| poly(A) polymerase [Neisseria meningitidis M01-240013]
Length = 453
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 124/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV +EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ G++DI + K+
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGMDDIAERKLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S+ TA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSQATA---GPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|406918016|gb|EKD56671.1| hypothetical protein ACD_58C00122G0008 [uncultured bacterium]
Length = 446
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 106/201 (52%), Gaps = 16/201 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFDI+TSA E+ ++F + +GK+F I + E++++ + G R
Sbjct: 35 PKDFDIVTSARPDEIEKMFGKTLKIGKQFGIMVAIVDGNHYEIATYRSEGVYSDR----- 89
Query: 66 FERPIGCDEKDFIRWRNC----LQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVI 121
RP D + W N +RDFTING+ +DP K + DY+GG ED++ ++ +
Sbjct: 90 -RRP------DEVFWTNAKEDAFRRDFTINGMFYDPINKKVIDYVGGQEDLKNKIIKFIG 142
Query: 122 PASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAY 181
+ +ED RI+RAIR LGF F + T + + S I + R+ E+N ML +
Sbjct: 143 NPTNRIKEDHLRIIRAIRFKNVLGFSFDKRTYEAIINNSYLIESVSYERIRDELNKMLVH 202
Query: 182 GSAEASLRLLWKFGLLEVLLP 202
+ +SL L + G+L+ +LP
Sbjct: 203 TTRASSLIDLKETGILKHILP 223
>gi|444426206|ref|ZP_21221629.1| poly(A) polymerase [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444240525|gb|ELU52064.1| poly(A) polymerase [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 441
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 111/218 (50%), Gaps = 14/218 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 51 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQKN 110
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ K + G ++D R RDFTIN + ++ I+DY GIED+
Sbjct: 111 KNVSQQSKEGMLLRDNVYGTIDEDAER------RDFTINSMYYNIADYSIHDYARGIEDL 164
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
V+ + T ++ED R+LRAIR A +L F +TA ++ ++P + + RL
Sbjct: 165 EDRLVRLIGDPETRYREDPVRMLRAIRFAVKLDFDIEEDTAAPIEEMAPLLRDIPSARLF 224
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E ML G + LL ++ L + L P A + +
Sbjct: 225 EESLKMLQSGHGLETYHLLREYNLFQQLFPAIAEHFTE 262
>gi|284009161|emb|CBA76198.1| poly(A) polymerase I [Arsenophonus nasoniae]
Length = 502
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 83/316 (26%), Positives = 148/316 (46%), Gaps = 32/316 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRF-- 58
+L + PKDFD+ T+A +++ ++F C +VG+RF + H+ F I+EV++F S +
Sbjct: 105 LLGKKPKDFDVTTNATPEQIRKLFRNCRLVGRRFRLAHIMFGYEIIEVATFRGSHEQTDT 164
Query: 59 -SRDFKYEFERPI-------GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
++D ++ + + G E D IR RDFTIN L + + DY+GG E
Sbjct: 165 NNKDMAHKAQSGMLLRDNIFGNIEDDAIR------RDFTINSLYYRINDFTLRDYVGGFE 218
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+ ++ + ++ED R+LRAIR A +L + ETA + L+ + + R
Sbjct: 219 DLNNGMIRLIGDPKIRYREDPVRMLRAIRFACKLNMQIDAETAKPIPQLAYLLKDIPSAR 278
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS-LFSN 229
L E +L G + + L ++ L + L P+ + +H D L+++ + N
Sbjct: 279 LFEESLKLLQTGQGYQTYQQLKRYNLFQSLFPL----VERHFTANNDSPMELIINQVLQN 334
Query: 230 LDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRIN 289
D + ++ + + A + ++ PLV L+ +G EA IA +N
Sbjct: 335 TDYRIKNNKRVNPAFLFATMLWY---------PLVEHAERLSQESGLPYYEAFAIA--MN 383
Query: 290 KSHDESFCELLEPRDL 305
DE + P+ L
Sbjct: 384 DILDEQCRSIAIPKRL 399
>gi|359455308|ref|ZP_09244543.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20495]
gi|414071257|ref|ZP_11407229.1| poly(A) polymerase [Pseudoalteromonas sp. Bsw20308]
gi|358047651|dbj|GAA80792.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20495]
gi|410806331|gb|EKS12325.1| poly(A) polymerase [Pseudoalteromonas sp. Bsw20308]
Length = 473
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 133/271 (49%), Gaps = 20/271 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD++T+A +V ++F C ++G+RF + H+ F I+EV++ G +
Sbjct: 84 LLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVATMR--GHHEAP 141
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ K + + D+ +R + +RDF+IN L + I+DY G+ I+
Sbjct: 142 EDKNQISQ--SSDQGQLLRDNVFGSIEEDAERRDFSINALYYSINDFSIHDYANGLAAIK 199
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+++ + T ++ED R+LRA+R A +L + ++ + L+ + + RL
Sbjct: 200 AKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPKSEKPITELASLLDNIPPARLFE 259
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G AEA+ +L K+GL + L P + L K + L+ +F N D+
Sbjct: 260 EVLKLFLNGKAEANFLMLRKYGLFKSLFPDLDSILNK---KPGGLEHTLVQQMFQNTDER 316
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQ 258
+ D+ + LW +LA K + +Q
Sbjct: 317 INADKKVTPAFIFAALLWFPLLARTKEIQEQ 347
>gi|420257261|ref|ZP_14760026.1| poly(A) polymerase I [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|404515284|gb|EKA29054.1| poly(A) polymerase I [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 478
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 133/279 (47%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 83 LLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 136
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 137 ---HEQQQTEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQRRDFTINSLYYGISDFALRDY 193
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 194 TGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMTISPETAEPIPRLASLLHE 253
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A +H ++ +L+
Sbjct: 254 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEHHDSAMER---ILVQ 310
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 311 VLKNTDHRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 349
>gi|253997249|ref|YP_003049313.1| poly(A) polymerase [Methylotenera mobilis JLW8]
gi|253983928|gb|ACT48786.1| poly(A) polymerase [Methylotenera mobilis JLW8]
Length = 480
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 123/261 (47%), Gaps = 17/261 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFD+ T A +EV RVF + I+G+RF + HV F + +EVS+F
Sbjct: 100 LLQREPKDFDVATDATPEEVNRVFRRSRIIGRRFRLVHVLFGDETIEVSTFRGHHEAKGD 159
Query: 61 DFKYEFERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
E R I G E+D R RDFT N L +DP ++I+ D+ G DI+
Sbjct: 160 AHTNESGRIIRDNVFGSLEEDATR------RDFTANALYYDPTSEIVLDFHQGFADIQAG 213
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + T + ED R+LR +R++A+LG + T + ++ + + RL EM
Sbjct: 214 ILRMIGKPETRYAEDPVRMLRVVRLSAKLGLKIDPATMAPIAKMADLLQDVPPSRLFDEM 273
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+ G A S+ L + L LLP+ L + R ++ N D+ +
Sbjct: 274 LKLFLSGHAIESVSALREQHLHHGLLPMLDVVLEQPMGER------FVMLALKNTDERIL 327
Query: 236 PDRPCHSSLWIAILAFHKALS 256
+ + S A L +H+ L+
Sbjct: 328 SGKSANPSFLFATLLWHEVLA 348
>gi|399020004|ref|ZP_10722145.1| poly(A) polymerase [Herbaspirillum sp. CF444]
gi|398096377|gb|EJL86701.1| poly(A) polymerase [Herbaspirillum sp. CF444]
Length = 473
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 106/194 (54%), Gaps = 5/194 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+ PKDFD+ T+A ++V ++F + I+G+RF I HV F ++EV++F R S
Sbjct: 67 LLSVKPKDFDVATNATPEQVKQLFRRAFIIGRRFQIVHVMFGQELIEVTTF----RGASA 122
Query: 61 DFKYEFERPIGCDEKDFI-RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
D + E + F + + ++RDFTIN + +DP ++ + DY GGI DIR ++
Sbjct: 123 DMAPKDEHGRVLRDNTFGEQHEDAVRRDFTINAMYYDPASQSVLDYHGGIADIRAKTLRI 182
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ ++ED R+LR +R AA+L F T + ++P I + R+ EM +L
Sbjct: 183 IGVPEERYREDPVRMLRVVRFAAKLKFSIDAATGAPIAVMAPLINNVPAARVFDEMLKLL 242
Query: 180 AYGSAEASLRLLWK 193
G A A L+ L K
Sbjct: 243 MSGHALACLQQLRK 256
>gi|344344445|ref|ZP_08775307.1| poly(A) polymerase [Marichromatium purpuratum 984]
gi|343803852|gb|EGV21756.1| poly(A) polymerase [Marichromatium purpuratum 984]
Length = 458
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 22/259 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T A ++V +VF C ++G+RF + HVHF I+EV++F +G
Sbjct: 61 LLGHEPKDFDVATDATPEQVRQVFRNCRLIGRRFRLAHVHFGRDIIEVATFRGNG----- 115
Query: 61 DFKYEFERPIGCDEKDFIRWRNC--------LQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ E E C E I N L+RDFTIN L ++ + DY G+ D+
Sbjct: 116 --ESEAEEGERCVENGMIVRDNAYGTIAEDALRRDFTINALYYNIQDFSLIDYADGLADL 173
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
R K++ + ++ED R+LRA+R A +LGF T + L + + RL
Sbjct: 174 RAGKLRLIGDPEQRYREDPVRMLRAVRFACKLGFSIEEATERPLFELGHLLDGVPAARLF 233
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV--KHGFRRRDKRSNLLLSLFSNL 230
E+ + G L +GL +L P A L H F L+ +N
Sbjct: 234 DELIKLFHAGYGLDVFEKLRHYGLFALLFPDTEAALACEDHDF-----PITLVSRGLANT 288
Query: 231 DKLLAPDRPCHSSLWIAIL 249
D + +P + A+L
Sbjct: 289 DARIQAGKPVTPAFLFAVL 307
>gi|451812412|ref|YP_007448866.1| poly(A) polymerase [Candidatus Kinetoplastibacterium galatii
TCC219]
gi|451778314|gb|AGF49262.1| poly(A) polymerase [Candidatus Kinetoplastibacterium galatii
TCC219]
Length = 422
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 140/293 (47%), Gaps = 25/293 (8%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFDI T+A +++ +F + I+G+RF + HV F I+E+S+F +S +D +
Sbjct: 67 PKDFDIATNATPEQIKYIFKRARIIGRRFRLVHVIFHKEIIEISTFRSSPIDIKQD---K 123
Query: 66 FERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
F R + G +D R RDFTIN L +D + + DY GI D++K ++ +
Sbjct: 124 FGRILTDNYFGSQSEDSTR------RDFTINSLYYDAREETVIDYHNGIYDLKKKQINII 177
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
AS ++ED RILRAIR A+++ +T ++ I + + RL E+ +L
Sbjct: 178 GEASIRYKEDPVRILRAIRFASKINGSIGHDTLKYIARQKQLIANIPQSRLFDELIKILT 237
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G+A L + L LLP L ++ N L + N D+ + +
Sbjct: 238 CGNAFKCLMEIKSNKLHIFLLPTLEETL------QKTDSINFLKTSLENTDQRVLNGKSV 291
Query: 241 HSSLWIAILAFHKALSDQPRD-----PLVVAVFSLAVYNGGDMLEAVKIARRI 288
S +AI+ + + + ++ + +++ S + D L+ + I +RI
Sbjct: 292 SPSFLLAIILWPQVQEEYEKNYKKNKNVYISMVSASDSVIEDQLKVLAIHKRI 344
>gi|313668687|ref|YP_004048971.1| poly(A) polymerase [Neisseria lactamica 020-06]
gi|313006149|emb|CBN87610.1| putative poly(A) polymerase [Neisseria lactamica 020-06]
Length = 453
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV +EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|294670147|ref|ZP_06735072.1| poly(A) polymerase [Neisseria elongata subsp. glycolytica ATCC
29315]
gi|291308074|gb|EFE49317.1| poly(A) polymerase [Neisseria elongata subsp. glycolytica ATCC
29315]
Length = 455
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 116/254 (45%), Gaps = 23/254 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T+A +EV VF + I+G+RF I HV +EV++F G+ R
Sbjct: 68 PKDFDVATNATPEEVRAVFRRSRIIGRRFRIVHVMVGPETIEVTTFRGGGKAVQNEQGRI 127
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G +D R RDFT N L FDP I D+ G+ED++ ++
Sbjct: 128 MKDNTY------GTLAEDAGR------RDFTCNALYFDPVKGEIIDFHNGVEDVKARRLV 175
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ + +QED RILRA+R+A +LGF TA + + + + RL E+ +
Sbjct: 176 MIGDPAERYQEDPVRILRAVRLAGKLGFTVEERTAAPIAKYAGRLKEEPPARLFDEIMKL 235
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
L G A L G+ + P+ A R R N++ + N D+ L D+
Sbjct: 236 LFSGYARRCLDQFHTLGIDTPIHPLLDALQQAS----RGGRPNMVTASLKNTDERLRADK 291
Query: 239 PCHSSLWIAILAFH 252
+A L +
Sbjct: 292 SVSVGFVLAALMWE 305
>gi|238750543|ref|ZP_04612043.1| Poly(A) polymerase [Yersinia rohdei ATCC 43380]
gi|238711191|gb|EEQ03409.1| Poly(A) polymerase [Yersinia rohdei ATCC 43380]
Length = 473
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 130/276 (47%), Gaps = 27/276 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 78 LLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQPA 137
Query: 52 STSGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
S + S+ + + G E D R RDFTIN L + + DY GG
Sbjct: 138 EDSDKNSSQQAQNGMLLRDNIFGTIEDDAQR------RDFTINSLYYGISDFALRDYTGG 191
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + ++
Sbjct: 192 LRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMTISPETAEPIPRLASLLHEIPP 251
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E +L G + L ++ L + L P+ A +H +L+ +
Sbjct: 252 ARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEH---HDSPMERILVQVLK 308
Query: 229 NLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
N D L D+ + + LW ++ + L+ +
Sbjct: 309 NTDHRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 344
>gi|224825650|ref|ZP_03698754.1| poly(A) polymerase [Pseudogulbenkiania ferrooxidans 2002]
gi|224601874|gb|EEG08053.1| poly(A) polymerase [Pseudogulbenkiania ferrooxidans 2002]
Length = 455
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 11/253 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L+ PKDFD+ TSA ++V +F + I+G+RF I HV +EV++F R S
Sbjct: 68 LLDVNPKDFDVATSATPEQVHHLFRRSRIIGRRFKIVHVMVGPETIEVTTF----RGGSI 123
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
D E R I D + + +RDFT+N L +DP + I DY G++D++ K+ +
Sbjct: 124 DDTNETGR-IMADNSYGSQEEDAHRRDFTVNALFYDPSDESIVDYHHGVKDLQARKLVMI 182
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
+ +QED R+LRA+R+AA+L F T ++ + + K RL EM +L
Sbjct: 183 GQPARRYQEDPVRMLRAVRLAAKLNFEIDENTRKPIRAHAHLLKKEPPARLFDEMLKLLM 242
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPC 240
G A + L L + GL + P+ A L + G K L L L S D + D+P
Sbjct: 243 SGQAYSCLCKLREEGLSRGVFPLLDAVLDEEG-----KDEFLRLGLQST-DVRIREDKPV 296
Query: 241 HSSLWIAILAFHK 253
+A L + +
Sbjct: 297 SVGFLLATLLWRQ 309
>gi|238786773|ref|ZP_04630574.1| Poly(A) polymerase [Yersinia frederiksenii ATCC 33641]
gi|238725141|gb|EEQ16780.1| Poly(A) polymerase [Yersinia frederiksenii ATCC 33641]
Length = 521
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 131/279 (46%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 125 LLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 178
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 179 ---HEQQQAEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQRRDFTINSLYYGISDFALRDY 235
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 236 TGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMSISAETAEPIPRLASLLHE 295
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A +H +L+
Sbjct: 296 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEH---HDSPMERILVQ 352
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 353 VLKNTDHRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 391
>gi|407070501|ref|ZP_11101339.1| poly(A) polymerase [Vibrio cyclitrophicus ZF14]
Length = 451
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 111/211 (52%), Gaps = 1/211 (0%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A +++ +F C ++G+RF + H+ F I+EV++F + S+
Sbjct: 63 LLGSQPKDFDIATNATPEQIKHLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSK 122
Query: 61 DFKYEFERPIGCDEKDFIRW-RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + E + + + + +RDFTIN + ++ I+DY GG+ED+ ++
Sbjct: 123 NVSAQSEEGMLLRDNVYGNVDEDAERRDFTINAMYYNIADYSIHDYAGGVEDLEDKLIRL 182
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+ T ++ED R+LRA+R AA+L F +TA ++ L+ + + RL E +L
Sbjct: 183 IGDPETRYREDPVRMLRAMRFAAKLDFDIEEDTADPIEELAHLLKDIPAARLYEESLKLL 242
Query: 180 AYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
G + L+ ++ L + + P A + +
Sbjct: 243 QSGHGLETYHLMREYNLFQQMFPSIAEHFTE 273
>gi|332160459|ref|YP_004297036.1| poly(A) polymerase I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|433551501|ref|ZP_20507543.1| Poly(A) polymerase [Yersinia enterocolitica IP 10393]
gi|325664689|gb|ADZ41333.1| poly(A) polymerase I [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|431787683|emb|CCO70583.1| Poly(A) polymerase [Yersinia enterocolitica IP 10393]
Length = 472
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 133/279 (47%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 77 LLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 130
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 131 ---HEQQQTEDSDKNSSQQAQNGMLLRDNIFGTIEDDAQRRDFTINSLYYGISDFALRDY 187
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 188 TGGLRDLKEGIIRLIGSPETRYREDPVRMLRAVRFAAKLDMTISPETAEPIPRLASLLHE 247
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A +H ++ +L+
Sbjct: 248 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEHHDSAMER---ILVQ 304
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 305 VLKNTDHRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 343
>gi|289209207|ref|YP_003461273.1| poly(A) polymerase [Thioalkalivibrio sp. K90mix]
gi|288944838|gb|ADC72537.1| poly(A) polymerase [Thioalkalivibrio sp. K90mix]
Length = 461
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 132/267 (49%), Gaps = 33/267 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L R PKDFDI T A +V +F C ++G+RF + HV F ++EV++F
Sbjct: 60 LLGREPKDFDIATDATPDQVRGLFRNCRLIGRRFRLAHVLFGREVIEVATFRAPHDEDDD 119
Query: 52 -------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYD 104
S G R RD +Y G E+D +R RDF++N L +D + D
Sbjct: 120 NDGQVALSEEG-RILRDNRY------GTIEQDAVR------RDFSVNALYYDIDDFSVLD 166
Query: 105 YIGGIEDIRKAKVQTVI-PASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
Y GG+ED+R+ ++ + T +ED R+LRA+R +A+LG R + E ++ L+ +
Sbjct: 167 YTGGVEDLREGVLRLIGDDVETRLREDPVRMLRAVRFSAKLGLRIAPEVEAGIRELAGLM 226
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLL 223
+ RL E+ + G+A L L +FGL + P +AA ++R L+
Sbjct: 227 QTVAPARLFDEVIKLFHSGAAVTCLDELERFGLFAPMFP-EAAECFADPDVGAERRQFLV 285
Query: 224 LSLFSNLDKLLAPDRPCHSS-LWIAIL 249
SL N DK + + + + L+ AIL
Sbjct: 286 ESLL-NTDKRINEELGVNPAFLYAAIL 311
>gi|153825676|ref|ZP_01978343.1| polyA polymerase [Vibrio cholerae MZO-2]
gi|149740613|gb|EDM54722.1| polyA polymerase [Vibrio cholerae MZO-2]
Length = 457
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 3/212 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A +++ ++F C ++G+RF + H+ F IVEV++F + S+
Sbjct: 63 LLGGKPKDFDVATNATPEQLRQLFRNCRLIGRRFRLAHIMFGRDIVEVATFRGHHQESSQ 122
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ G +D + + +RDFTIN + ++ I+DY GG+ED+ V
Sbjct: 123 SQNIAAQSEAGMLLRDNVYGTIDEDAERRDFTINAMYYNIADYSIHDYAGGMEDLEDRLV 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L F +TA ++ L+ + + RL E
Sbjct: 183 RLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEQLALLLRDIPAARLYEESLK 242
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV 209
ML G + L+ ++ L + L P A +
Sbjct: 243 MLQAGHGLETYHLMRQYNLFQQLFPTIAEHFT 274
>gi|107021834|ref|YP_620161.1| poly(A) polymerase [Burkholderia cenocepacia AU 1054]
gi|105892023|gb|ABF75188.1| poly(A) polymerase [Burkholderia cenocepacia AU 1054]
Length = 518
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQDLIEVSTFRALVDAPPE 156
Query: 54 -------SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFD 96
RR RD E +R G +D + W + +RDFTIN + +D
Sbjct: 157 AAAATAEPPRRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYD 212
Query: 97 PYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFV 156
P + + DY G+ D+R ++ + +T F+ED R+LR +R AA+LGF T +
Sbjct: 213 PSTQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPI 272
Query: 157 KHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 HALADLINNVPAARLFDEMLKLLLSGHALARLQRLRK 309
>gi|294142393|ref|YP_003558371.1| polyA polymerase [Shewanella violacea DSS12]
gi|293328862|dbj|BAJ03593.1| polyA polymerase [Shewanella violacea DSS12]
Length = 435
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 149/301 (49%), Gaps = 24/301 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST----SGR 56
+L PKDFD++T+A +E+ +F C ++G+RF + H+ F ++EV++ SG
Sbjct: 30 LLGLQPKDFDVVTNATPEEIKGLFRNCRLIGRRFRLAHIVFGRDVIEVATLRGHHVDSGE 89
Query: 57 RFSR---DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ S+ + + + G ++D R RDFT+N L +D I+ Y GG++D++
Sbjct: 90 KISKTNAEGRLLRDNVYGTIDEDAER------RDFTVNALYYDISDFSIHSYGGGLQDLQ 143
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + +T ++ED R+LRA+R A +L ++TA + L+P + + R+
Sbjct: 144 SRTIRMIGDPNTRYREDPVRMLRAVRFATKLNMTIEKDTAAPISELAPLLKDIPAARMYE 203
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G A + ++ GL E L P+ + LV +K ++ S+ + D
Sbjct: 204 EILKLFFNGHALNNFNMMRDLGLFEPLFPLVNSQLVDEPNGPANK---MMKSIMQSTDSR 260
Query: 234 LAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSL--AVYNG-GDMLE----AVKIAR 286
+ ++ + + A + ++ LS + D + SL A Y GD++E + I R
Sbjct: 261 VKAEKTVTPAFFYAAILWY-PLSQRADDIALEGGLSLYDAYYAAMGDVMEQQCSTISIPR 319
Query: 287 R 287
R
Sbjct: 320 R 320
>gi|413955383|gb|AFW88032.1| hypothetical protein ZEAMMB73_729308 [Zea mays]
Length = 274
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 71/104 (68%)
Query: 246 IAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDL 305
I++LAFH+AL+ +P DPL+VA F+LA Y GGDM AV I + IN+ HD F ELLEP+
Sbjct: 98 ISLLAFHEALARKPCDPLIVATFALAFYLGGDMSLAVDIRKSINRQHDIGFRELLEPKVW 157
Query: 306 DFEALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349
+ L EV FA K AL+KMTDEY V+ AMA +AP SDL
Sbjct: 158 TDKHLAGEVQSFAALMKQALTKMTDEYHVANAMAKIHQAPSSDL 201
>gi|393759753|ref|ZP_10348565.1| poly(A) polymerase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393161565|gb|EJC61627.1| poly(A) polymerase [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 459
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST--SGRRFSRDFK 63
PKDFD+ T+A +++ +F + I+G+RF + HV F ++E S+F SG++ +
Sbjct: 74 PKDFDVATNATPEQIRPLFRRARIIGRRFRLVHVVFGQEVIETSTFRADDSGKQTDEHGR 133
Query: 64 YEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPA 123
+ G E D R RDFT+N L +DP + + DY G+ D++ +V+ + A
Sbjct: 134 ILRDNEYGTIEDDAAR------RDFTLNALYYDPLTETVIDYHNGVADLKNRQVRIIGDA 187
Query: 124 STSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGS 183
T ++ED R+LRA+R A++L T ++ LS I + RL E +L G
Sbjct: 188 QTRYREDPVRMLRAVRFASKLDATIEPATDAPIRSLSRLIENVPESRLADETLKLLNCGH 247
Query: 184 AEASLRLLWKFGLLEVLLPI 203
A ++ L GL LLP+
Sbjct: 248 AMDCIQRLQALGLHSKLLPM 267
>gi|421561012|ref|ZP_16006865.1| poly(A) polymerase family protein [Neisseria meningitidis NM2657]
gi|254670458|emb|CBA06113.1| poly(A) polymerase [Neisseria meningitidis alpha153]
gi|402339492|gb|EJU74708.1| poly(A) polymerase family protein [Neisseria meningitidis NM2657]
Length = 453
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ET ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEET---TAPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|433536525|ref|ZP_20493033.1| poly(A) polymerase family protein [Neisseria meningitidis 77221]
gi|432274475|gb|ELL29563.1| poly(A) polymerase family protein [Neisseria meningitidis 77221]
Length = 453
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 123/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + IVG+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDAMPEQVHKLFRRSRIVGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ ++ED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYREDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|424778634|ref|ZP_18205579.1| poly(A) polymerase [Alcaligenes sp. HPC1271]
gi|422886535|gb|EKU28952.1| poly(A) polymerase [Alcaligenes sp. HPC1271]
Length = 459
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 104/200 (52%), Gaps = 8/200 (4%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST--SGRRFSRDFK 63
PKDFD+ T+A +++ +F + I+G+RF + HV F I+E S+F SG++ +
Sbjct: 74 PKDFDVATNATPEQIRPLFRRARIIGRRFRLVHVVFGQEIIETSTFRADDSGKQTDEHGR 133
Query: 64 YEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPA 123
+ G E D R RDFT+N L +DP + + DY G+ D++ +V+ + A
Sbjct: 134 ILRDNEYGTIEDDAAR------RDFTLNALYYDPLTETVIDYHNGVADLKDRQVRIIGDA 187
Query: 124 STSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGS 183
T ++ED R+LRA+R A++L T ++ LS I + RL E +L G
Sbjct: 188 ETRYREDPVRMLRAVRFASKLDATIEPATDAPIRSLSRLIENVPESRLADETLKLLNCGH 247
Query: 184 AEASLRLLWKFGLLEVLLPI 203
A ++ L GL LLP+
Sbjct: 248 AMDCIQRLQALGLHSKLLPM 267
>gi|389811627|ref|ZP_10206190.1| poly(A) polymerase [Rhodanobacter thiooxydans LCS2]
gi|388440260|gb|EIL96661.1| poly(A) polymerase [Rhodanobacter thiooxydans LCS2]
Length = 448
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 10/229 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T A EV ++F C ++G+RF + HV F I+EV++F +G
Sbjct: 57 LLGLRPKDFDVATDATPDEVKKLFRNCRLIGRRFRLAHVVFGPEIIEVATFRGTGEEGGE 116
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
++ + I D + L+RDF +N + +D + DY+GG++D+ + ++ +
Sbjct: 117 GDRHIVDGRIVRDNIWGTIEEDALRRDFRVNAMYYDISDFSVRDYVGGMQDLEERVLRLI 176
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
T + ED R+LRA R+AA+LG R + L P + RL E M
Sbjct: 177 GDPDTRYHEDPVRMLRAARLAAKLGMRIDAAAMAPFETLGPLLADAAPARLFDESLKMFL 236
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQA----------AYLVKHGFRRRDKR 219
G S R+L + GLL+ L P A LV+HG D R
Sbjct: 237 SGHGLKSFRVLEQCGLLKFLFPATARALRRGDEALRALVEHGLANTDAR 285
>gi|300721909|ref|YP_003711187.1| poly(A) polymerase [Xenorhabdus nematophila ATCC 19061]
gi|297628404|emb|CBJ88969.1| poly(A) polymerase I [Xenorhabdus nematophila ATCC 19061]
Length = 455
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 132/268 (49%), Gaps = 13/268 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRF-S 59
+L++ PKDFDI T+A ++V ++F C +VG+RF + H+ F ++EV++F + S
Sbjct: 59 LLHKQPKDFDIATNATPEQVRKLFRNCRLVGRRFRLAHIMFGPDVIEVATFRGPHDQVES 118
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
D + G +D I + +RDFTIN L + + DY+GG+ D+ +
Sbjct: 119 NDRSQSHKAQSGMLLRDNIFGSVEEDAARRDFTINSLYYGIEDFALRDYVGGMADLNEGI 178
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
++ + ++ED R+LRA+R A++L TA + L+ + + RL E
Sbjct: 179 IRLIGDPEIRYREDPVRMLRAVRFASKLDMTIEPATAEPIPRLAFLLNDIPSARLFEESL 238
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236
+L G ++ +LL K+ L + L P+ L + G +K LL+ + N D +
Sbjct: 239 KLLQSGQGYSTYKLLCKYNLFQPLFPMIQRGLTQTGDSPMEK---LLVQVLKNTDHRIRD 295
Query: 237 DRPCHSS------LWIAILAFHKALSDQ 258
D+ + + LW ++ + LS +
Sbjct: 296 DKRVNPAFLFAAMLWYPLIEHAEKLSQE 323
>gi|255068167|ref|ZP_05320022.1| poly(A) polymerase [Neisseria sicca ATCC 29256]
gi|255047594|gb|EET43058.1| poly(A) polymerase [Neisseria sicca ATCC 29256]
Length = 456
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 119/246 (48%), Gaps = 26/246 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFDI T A +++ ++F + I+G+RF I HV +EV++F G+
Sbjct: 66 LLGVEPKDFDIATDATPEQIHKIFRRSRIIGRRFQIVHVMVGPETIEVTTFRGGGKVQQN 125
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R +D Y G E+D +R RDFT N L +DP + I D+ G+ DI
Sbjct: 126 AHGRIMKDNTY------GSMEEDAMR------RDFTCNALYYDPIKEEIIDFHHGVGDIA 173
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
K+ + A+ +QED RILRA+R++ +LGF TA + + + RL
Sbjct: 174 DRKLVMIGNAAERYQEDPVRILRAVRLSGKLGFDVEENTAAPIPEQAGRLKHEPVARLFD 233
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDK 232
E+ +L G A L+ L G+ + + P+ A + K N ++SL N D+
Sbjct: 234 EIMKLLFSGYARECLKRLNSLGVSDDVHPLLTA------LKSAAKPENRIISLALKNTDE 287
Query: 233 LLAPDR 238
L D+
Sbjct: 288 RLRADK 293
>gi|241760511|ref|ZP_04758604.1| poly(A) polymerase [Neisseria flavescens SK114]
gi|241319015|gb|EER55517.1| poly(A) polymerase [Neisseria flavescens SK114]
Length = 450
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 24/245 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFDI T A +++ +VF + I+G+RF I HV +EV++F +
Sbjct: 65 LLGVEPKDFDIATDATPEQIRKVFRRSRIIGRRFQIVHVMIGPETIEVTTFRGGDKVQQN 124
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R +D Y G E+D +R RDFT N L +DP + I+D+ G+ D+
Sbjct: 125 AQGRIMKDNTY------GSIEEDAMR------RDFTCNALYYDPIKEEIWDFHQGVADVA 172
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
K+ + + +QED RILRA+R++ +LGF +TA + + + RL
Sbjct: 173 DKKLVMIGDPAERYQEDPVRILRAVRLSGKLGFEVEEQTALPIAEYAGRLKNEPVARLFD 232
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ +L G + A L+ L + G+ E + P+ A +R +++ N D+
Sbjct: 233 EILKILFSGHSRACLKRLNELGIPEGIHPLLDALKTAEAADKR-----MIMLALKNTDER 287
Query: 234 LAPDR 238
+ D+
Sbjct: 288 IRADK 292
>gi|385851500|ref|YP_005898015.1| poly(A) polymerase [Neisseria meningitidis M04-240196]
gi|325206323|gb|ADZ01776.1| poly(A) polymerase [Neisseria meningitidis M04-240196]
Length = 453
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ET ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEET---TAPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|172059737|ref|YP_001807389.1| poly(A) polymerase [Burkholderia ambifaria MC40-6]
gi|171992254|gb|ACB63173.1| poly(A) polymerase [Burkholderia ambifaria MC40-6]
Length = 512
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRAMVDAPPE 156
Query: 54 -----SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 AAAAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 212
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ DIR ++ + +T ++ED R+LR +R AA+LGF T +
Sbjct: 213 TQTVLDYHDGMADIRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIETHTREPINA 272
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 LADLINNVPAARLFDEMLKLLLSGQALACLQRLRK 307
>gi|171320262|ref|ZP_02909318.1| poly(A) polymerase [Burkholderia ambifaria MEX-5]
gi|171094491|gb|EDT39549.1| poly(A) polymerase [Burkholderia ambifaria MEX-5]
Length = 516
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRAMVDAPPE 156
Query: 54 -----SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 AAAAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 212
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ DIR ++ + +T ++ED R+LR +R AA+LGF T +
Sbjct: 213 TQTVLDYHDGMADIRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIETHTREPINA 272
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 LADLINNVPAARLFDEMLKLLLSGQALACLQRLRK 307
>gi|117921843|ref|YP_871035.1| poly(A) polymerase [Shewanella sp. ANA-3]
gi|117614175|gb|ABK49629.1| poly(A) polymerase [Shewanella sp. ANA-3]
Length = 435
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 125/255 (49%), Gaps = 8/255 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++F G
Sbjct: 42 LLGLEPKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFR--GHHGDS 99
Query: 61 DFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ K G +D + + +RDFT+N L +D I Y GG+ED++ +
Sbjct: 100 NEKISKANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMEDLKAGTL 159
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L TA +K L+P + + R+ E+
Sbjct: 160 RLIGDPETRYREDPVRMLRAVRFATKLSMAIEEVTAKPIKQLAPLLKDIPAARMYEEVLK 219
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G A A+ ++ ++ L L P A L + ++ ++ + D + D
Sbjct: 220 LFFAGKAMANFEMMQEYKLFAPLFPQVDAQLKDAP---KGPAMKMVQAIMKSTDARVNED 276
Query: 238 RPCHSSLWIAILAFH 252
+P S + A + ++
Sbjct: 277 KPVTPSFFYAAILWY 291
>gi|115350706|ref|YP_772545.1| poly(A) polymerase [Burkholderia ambifaria AMMD]
gi|115280694|gb|ABI86211.1| poly(A) polymerase [Burkholderia ambifaria AMMD]
Length = 461
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 42 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRAMVDAPPE 101
Query: 54 -----SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 102 AAAAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 157
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ DIR ++ + +T ++ED R+LR +R AA+LGF T +
Sbjct: 158 TQTVLDYHDGMADIRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIETHTREPINA 217
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 218 LADLINNVPAARLFDEMLKLLLSGQALACLQRLRK 252
>gi|170698323|ref|ZP_02889398.1| poly(A) polymerase [Burkholderia ambifaria IOP40-10]
gi|170136742|gb|EDT04995.1| poly(A) polymerase [Burkholderia ambifaria IOP40-10]
Length = 512
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRAMVDAPPE 156
Query: 54 -----SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 AAAAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 212
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ DIR ++ + +T ++ED R+LR +R AA+LGF T +
Sbjct: 213 TQTVLDYHDGMADIRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIETHTREPINA 272
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 LADLINNVPAARLFDEMLKLLLSGQALACLQRLRK 307
>gi|421548587|ref|ZP_15994612.1| poly(A) polymerase [Neisseria meningitidis NM2781]
gi|402326248|gb|EJU61653.1| poly(A) polymerase [Neisseria meningitidis NM2781]
Length = 453
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ET ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFDLSEET---TAPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|116688781|ref|YP_834404.1| poly(A) polymerase [Burkholderia cenocepacia HI2424]
gi|254246247|ref|ZP_04939568.1| Poly(A) polymerase [Burkholderia cenocepacia PC184]
gi|116646870|gb|ABK07511.1| poly(A) polymerase [Burkholderia cenocepacia HI2424]
gi|124871023|gb|EAY62739.1| Poly(A) polymerase [Burkholderia cenocepacia PC184]
Length = 518
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQDLIEVSTFRALVDAPPE 156
Query: 54 -------SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFD 96
RR RD E +R G +D + W + +RDFTIN + +D
Sbjct: 157 AAAATAEPPRRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYD 212
Query: 97 PYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFV 156
P + + DY G+ D+R ++ + +T F+ED R+LR +R AA+LGF T +
Sbjct: 213 PSTQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPI 272
Query: 157 KHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 HALADLINNVPAARLFDEMLKLLLSGHALACLQRLRK 309
>gi|167854734|ref|ZP_02477513.1| putative poly(A) polymerase [Haemophilus parasuis 29755]
gi|167854148|gb|EDS25383.1| putative poly(A) polymerase [Haemophilus parasuis 29755]
Length = 477
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 5/216 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + KDFDI T+A +E+ ++F QC ++G+RF + H+ F I EV++F +
Sbjct: 78 LLGQKAKDFDIATNARPEEIQKIFGRQCRLIGRRFRLAHIVFGREIYEVATFRADHHSNA 137
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K G +D + + +RDF++N +D +IYD+ GI+D++ K
Sbjct: 138 TE-KMSKTSEAGMLLRDNVYGTLREDAERRDFSVNAFYYDVSHNLIYDFFNGIDDLKAGK 196
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
+ + T +QED R+LRAIR A+L + + ++ ++ + + RL E
Sbjct: 197 LALIGDPVTRYQEDPVRMLRAIRFMAKLDMFLDKASDEPIRKMAVLLKNIPAARLFDESL 256
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + LL K+GL E L P+ + + ++G
Sbjct: 257 KLLQSGYGHKTYELLRKYGLFEQLFPVLSPFFTEYG 292
>gi|319638160|ref|ZP_07992923.1| PolyA polymerase [Neisseria mucosa C102]
gi|317400433|gb|EFV81091.1| PolyA polymerase [Neisseria mucosa C102]
Length = 450
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 118/245 (48%), Gaps = 24/245 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFDI T A +++ ++F + I+G RF I HV +EV++F +
Sbjct: 65 LLGVEPKDFDIATDATPEQIRKIFRRSRIIGHRFQIVHVMIGPETIEVTTFRGGDKVQQN 124
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R +D Y G E+D +R RDFT N L +DP + I+D+ G+ D+
Sbjct: 125 AQGRIMKDNTY------GSIEEDAMR------RDFTCNALYYDPIKEEIWDFHQGVADVA 172
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
K+ + + +QED RILRA+R++ +LGF +TA + + + RL
Sbjct: 173 DKKLVMIGNPAERYQEDPVRILRAVRLSGKLGFEVEEQTALPIAEYAGRLKNEPVARLFD 232
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ +L G + A L+ L + G+ E + P+ A +R +++ N D+
Sbjct: 233 EIMKILFSGHSRACLKRLNELGIPEGIHPLLDALKTAEAADKR-----MIMLALKNTDER 287
Query: 234 LAPDR 238
L D+
Sbjct: 288 LRADK 292
>gi|157377033|ref|YP_001475633.1| polynucleotide adenylyltransferase [Shewanella sediminis HAW-EB3]
gi|157319407|gb|ABV38505.1| Polynucleotide adenylyltransferase [Shewanella sediminis HAW-EB3]
Length = 496
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/311 (26%), Positives = 150/311 (48%), Gaps = 40/311 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++
Sbjct: 104 LLGLQPKDFDVVTNATPEEIKKLFRNCRLVGRRFRLAHIVFGRDVIEVATLRGHHVEHVE 163
Query: 52 ----STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIG 107
+ + R RD Y G ++D R RDFT+N L +D I+ Y G
Sbjct: 164 QVSKTNAEGRLLRDNVY------GTIDEDAER------RDFTVNALYYDISDFSIHSYGG 211
Query: 108 GIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLD 167
G+ED++ ++ + +T ++ED R+LRA+R A +L + A + L+P + +
Sbjct: 212 GLEDLKSRTIRLIGDPNTRYREDPVRMLRAVRFATKLDMTIDKGAADPIYELAPLLKDIP 271
Query: 168 RGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH--GFRRRDKRSNLLLS 225
R+ E+ + G A + ++ +FGL L P+ + LV GF + +L +
Sbjct: 272 AARMYEEILKLFFNGQAANNFTMMREFGLFAPLFPLVDSQLVDEPDGF-----AAKMLQA 326
Query: 226 LFSNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSL-AVYNG--GDMLE-- 280
+ + D + ++ + + A + ++ LS + D + + SL YN GD++E
Sbjct: 327 VMESTDSRVRAEKTVTPAFFYAAILWY-PLSQRADDIALESGLSLYDAYNAAMGDVMEQQ 385
Query: 281 --AVKIARRIN 289
+ I RR +
Sbjct: 386 CRTISIPRRFS 396
>gi|206561603|ref|YP_002232368.1| putative polynucleotide adenylyltransferase [Burkholderia
cenocepacia J2315]
gi|444359735|ref|ZP_21161031.1| poly(A) polymerase [Burkholderia cenocepacia BC7]
gi|444368029|ref|ZP_21167901.1| poly(A) polymerase [Burkholderia cenocepacia K56-2Valvano]
gi|198037645|emb|CAR53588.1| putative polynucleotide adenylyltransferase [Burkholderia
cenocepacia J2315]
gi|443601512|gb|ELT69652.1| poly(A) polymerase [Burkholderia cenocepacia BC7]
gi|443601732|gb|ELT69860.1| poly(A) polymerase [Burkholderia cenocepacia K56-2Valvano]
Length = 516
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPE 156
Query: 52 ---STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 AATAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 212
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ D+R ++ + +T F+ED R+LR +R AA+LGF T +
Sbjct: 213 TQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPIHA 272
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 LADLINNVPAARLFDEMLKLLLSGHALACLQRLRK 307
>gi|170732080|ref|YP_001764027.1| poly(A) polymerase [Burkholderia cenocepacia MC0-3]
gi|169815322|gb|ACA89905.1| poly(A) polymerase [Burkholderia cenocepacia MC0-3]
Length = 518
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQDLIEVSTFRALVDAPPE 156
Query: 54 -------SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFD 96
RR RD E +R G +D + W + +RDFTIN + +D
Sbjct: 157 AAAATAEPPRRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYD 212
Query: 97 PYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFV 156
P + + DY G+ D+R ++ + +T F+ED R+LR +R AA+LGF T +
Sbjct: 213 PSTQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPI 272
Query: 157 KHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 HALADLINNVPAARLFDEMLKLLLSGHALACLQRLRK 309
>gi|225076461|ref|ZP_03719660.1| hypothetical protein NEIFLAOT_01507 [Neisseria flavescens
NRL30031/H210]
gi|224952140|gb|EEG33349.1| hypothetical protein NEIFLAOT_01507 [Neisseria flavescens
NRL30031/H210]
Length = 450
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 24/245 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFDI T A +++ +VF + I+G+RF I HV +EV++F +
Sbjct: 65 LLGVEPKDFDIATDATPEQIRKVFRRSRIIGRRFQIVHVMIGPETIEVTTFRGGNKVQQN 124
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R +D Y G E+D +R RDFT N L +DP + I+D+ G+ D+
Sbjct: 125 AQGRIMKDNTY------GSIEEDAMR------RDFTCNALYYDPIKEEIWDFHQGVADVA 172
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
K+ + + +QED RILRA+R++ +LGF+ +TA + + + RL
Sbjct: 173 DKKLVMIGDPAERYQEDPVRILRAVRLSGKLGFKVEEQTALPIAEYAGRLKNEPVARLFD 232
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ +L G + A L+ L G+ E + P+ A +R +++ N D+
Sbjct: 233 EILKILFSGYSRACLKRLNDLGIPEGIHPLLDALKTAETADKR-----MIMLALKNTDER 287
Query: 234 LAPDR 238
+ D+
Sbjct: 288 IRADK 292
>gi|165975632|ref|YP_001651225.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|165875733|gb|ABY68781.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 510
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L PKDFD+ T+A+ +E+ ++F QC ++G+RF + H+ F I EV++F +
Sbjct: 112 LLGHKPKDFDVATNAKPEEIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHN 171
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + +RDF++N L +DP +I+D+ GI D++ K+
Sbjct: 172 SDKISKVSEEGMLLRDNVYGTLREDAQRRDFSVNSLYYDPKHNLIFDFFDGITDLKAGKL 231
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LRA+R A+L + + ++ L+ + + RL E
Sbjct: 232 RLIGDPVVRYQEDPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLK 291
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ G + +L+ ++GL E L P+ + + R D + +LS
Sbjct: 292 LFQSGQGFKTYQLMRQYGLFEQLFPVLTPFFTE----RNDSNAERMLS 335
>gi|148979543|ref|ZP_01815574.1| polyA polymerase [Vibrionales bacterium SWAT-3]
gi|145961727|gb|EDK27023.1| polyA polymerase [Vibrionales bacterium SWAT-3]
Length = 451
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 111/219 (50%), Gaps = 17/219 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A +++ +F C ++G+RF + H+ F I+EV++F R
Sbjct: 63 LLGSQPKDFDIATNATPEQIKNLFRNCRLIGRRFRLAHIMFGRDIIEVATF--------R 114
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
E + + K+ + R+ + +RDFTIN + ++ I+DY GG+ED
Sbjct: 115 GHHQEPSKNVSAQSKEGMLLRDNVYGSVDEDAERRDFTINAMYYNIADYSIHDYAGGVED 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + T ++ED R+LRA+R +A+L F +TA ++ L+ + + RL
Sbjct: 175 LEDKLIRLIGDPETRYREDPVRMLRAMRFSAKLDFDIEEDTADPIEGLAHLLKDIPAARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + L+ ++ L + + P A Y +
Sbjct: 235 YEESLKLLQSGYGLETYHLMREYNLFQQMFPAVAEYFTE 273
>gi|333982095|ref|YP_004511305.1| poly(A) polymerase [Methylomonas methanica MC09]
gi|333806136|gb|AEF98805.1| poly(A) polymerase [Methylomonas methanica MC09]
Length = 475
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 14/209 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS- 59
+L R PKDFD+ T+A ++V +VF C I+G+RF + HV F I+EV++F S S
Sbjct: 89 LLGREPKDFDVATNASPEQVKQVFRNCRIIGRRFRLAHVFFGREIIEVATFRGSETAESD 148
Query: 60 RDFKYEFERPI-----GCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
R +E R + G E+D WR RDFT+N L ++ + DY GG++D
Sbjct: 149 RQVVHEDGRLLRDNVFGTLEEDV--WR----RDFTVNALYYNIRDFSVVDYTGGMQDHAN 202
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK-LDRGRLLM 173
A ++ + ++ED R+LRAIR A +LGF +T + H +LK + RL
Sbjct: 203 AVLRLIGDPDVRYREDPVRMLRAIRFAVKLGFTLHPDTEQPI-HTQAELLKSIPAARLYD 261
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
E + G + +L FGL +L P
Sbjct: 262 EALKLFLAGYGVQTFEMLRHFGLFAMLFP 290
>gi|307244988|ref|ZP_07527085.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307253941|ref|ZP_07535793.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307258396|ref|ZP_07540137.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306854153|gb|EFM86361.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306863145|gb|EFM95087.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306867580|gb|EFM99427.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
Length = 510
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L PKDFD+ T+A+ +E+ ++F QC ++G+RF + H+ F I EV++F +
Sbjct: 112 LLGHKPKDFDVATNAKPEEIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHN 171
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + +RDF++N L +DP +I+D+ GI D++ K+
Sbjct: 172 SDKISKVSEEGMLLRDNVYGTLREDAQRRDFSVNSLYYDPKHNLIFDFFDGITDLKAGKL 231
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LRA+R A+L + + ++ L+ + + RL E
Sbjct: 232 RLIGDPVVRYQEDPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLK 291
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ G + +L+ ++GL E L P+ + + R D + +LS
Sbjct: 292 LFQSGQGFKTYQLMRQYGLFEQLFPVLTPFFTE----RNDSNAERMLS 335
>gi|219870496|ref|YP_002474871.1| polyA polymerase [Haemophilus parasuis SH0165]
gi|219690700|gb|ACL31923.1| polyA polymerase [Haemophilus parasuis SH0165]
Length = 477
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 111/216 (51%), Gaps = 5/216 (2%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L + KDFDI T+A +E+ ++F QC ++G+RF + H+ F I EV++F +
Sbjct: 78 LLGQKAKDFDIATNARPEEIQKIFGRQCRLIGRRFRLAHIVFGREIYEVATFRADHHSNA 137
Query: 60 RDFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
+ K G +D + + +RDF++N +D +IYD+ GI+D++ K
Sbjct: 138 TE-KMSKTSEAGMLLRDNVYGTLREDAERRDFSVNAFYYDVSHNLIYDFFNGIDDLKAGK 196
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
+ + T +QED R+LRAIR A+L + + ++ ++ + + RL E
Sbjct: 197 LALIGDPVTRYQEDPVRMLRAIRFMAKLDMFLDKASDEPIRKMAVLLKNIPAARLFDESL 256
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
+L G + LL K+GL E L P+ + + ++G
Sbjct: 257 KLLQSGYGHKTYELLRKYGLFEQLFPVLSPFFTEYG 292
>gi|350571611|ref|ZP_08939930.1| poly(A) polymerase [Neisseria wadsworthii 9715]
gi|349791465|gb|EGZ45348.1| poly(A) polymerase [Neisseria wadsworthii 9715]
Length = 476
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/317 (28%), Positives = 142/317 (44%), Gaps = 37/317 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T+A ++V +VF + I+G+RF I HV +EV++F R
Sbjct: 93 PKDFDVATNATPEQVRKVFRRSRIIGRRFQIVHVMVGPETIEVTTFRGGDNALQNEHGRI 152
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L FDP + I D+ G+ED+R K+
Sbjct: 153 MKDNTY------GSMEEDAMR------RDFTCNALYFDPIRREIIDFHHGVEDVRNKKLV 200
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ +QED RILRAIR++ +LGF TA + + + RL EM +
Sbjct: 201 MIGEPEARYQEDPVRILRAIRLSGKLGFDIEEATAAPIAENAARLKNEPAARLFDEMLKI 260
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRS--NLLLSLFSNLDKLLAP 236
L G A L L + + + PI A ++ D R+ N++ N D L
Sbjct: 261 LLSGYARRCLDALKRSDIDVSVHPILDA------LKQSDHRNGQNIITLALKNTDDRLRA 314
Query: 237 DRPCH------SSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINK 290
D+ + LW + + + Q P+ ++ V +M + + +R +
Sbjct: 315 DKSVSVGFVLAAVLWPELYGYWQQHLSQGEKPVAALNSAIGVMR-DNMEQGWGVPQRFSA 373
Query: 291 SHDESFCELLEPRDLDF 307
+ E + L+P+ DF
Sbjct: 374 TMREIWA--LQPQ-FDF 387
>gi|161525796|ref|YP_001580808.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
gi|189349483|ref|YP_001945111.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
gi|160343225|gb|ABX16311.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
gi|189333505|dbj|BAG42575.1| poly(A) polymerase [Burkholderia multivorans ATCC 17616]
Length = 512
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 107/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPE 156
Query: 52 ---STSGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+ +R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 AATAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 212
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T +
Sbjct: 213 TQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIEPHTREPINA 272
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 LADLINNVPAARLFDEMLKLLLSGHALACLQRLRK 307
>gi|123441078|ref|YP_001005067.1| poly(A) polymerase I [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|122088039|emb|CAL10827.1| poly(A) polymerase [Yersinia enterocolitica subsp. enterocolitica
8081]
Length = 440
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 130/276 (47%), Gaps = 27/276 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 45 LLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQQT 104
Query: 52 STSGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
S + S+ + + G E D R RDFTIN L + + DY GG
Sbjct: 105 EDSDKNSSQQAQNGMLLRDNIFGTIEDDAQR------RDFTINSLYYGISDFALRDYTGG 158
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + ++
Sbjct: 159 LRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMTISPETAEPIPRLASLLHEIPP 218
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E +L G + L ++ L + L P+ A +H +L+ +
Sbjct: 219 ARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEH---HDSAMERILVQVLK 275
Query: 229 NLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
N D L D+ + + LW ++ + L+ +
Sbjct: 276 NTDHRLHNDKRVNPAFLFAAMLWYPLIEHAQKLTQE 311
>gi|417948857|ref|ZP_12591998.1| poly(A) polymerase [Vibrio splendidus ATCC 33789]
gi|342808988|gb|EGU44120.1| poly(A) polymerase [Vibrio splendidus ATCC 33789]
Length = 451
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 111/219 (50%), Gaps = 17/219 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A +++ +F C ++G+RF + H+ F I+EV++F R
Sbjct: 63 LLGSQPKDFDIATNATPEQIKNLFRNCRLIGRRFRLAHIMFGRDIIEVATF--------R 114
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
E + + K+ + R+ + +RDFTIN + ++ I+DY GG+ED
Sbjct: 115 GHHQEPSKNVSAQSKEGMLLRDNVYGSVDEDAERRDFTINAMYYNIADYSIHDYAGGVED 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + T ++ED R+LRA+R +A+L F +TA ++ L+ + + RL
Sbjct: 175 LEDKLIRLIGDPETRYREDPVRMLRAMRFSAKLDFDIEEDTADPIEGLAHLLKDIPAARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + L+ ++ L + + P A Y +
Sbjct: 235 YEESLKLLQSGYGLETYHLMREYNLFQQMFPAVAEYFTE 273
>gi|90406862|ref|ZP_01215054.1| Poly(A) polymerase (PAP) (Plasmid copy number protein)
[Psychromonas sp. CNPT3]
gi|90312099|gb|EAS40192.1| Poly(A) polymerase (PAP) (Plasmid copy number protein)
[Psychromonas sp. CNPT3]
Length = 448
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 108/207 (52%), Gaps = 4/207 (1%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A +E+ +F C ++G+RF + H+ F ++EV++F + S
Sbjct: 47 LLGLKPKDFDITTNATPEEIKALFRNCRLIGRRFRLAHILFGREVIEVATFRGPHDQQSA 106
Query: 61 DFKYEFERPIGC----DEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAK 116
K + ++ G D + +RDFT+N L +D +YD+ G++D++ K
Sbjct: 107 QDKQKVKQSQGGMLLRDNVYGSLEEDAERRDFTVNALYYDIADFALYDFCNGMQDLKDRK 166
Query: 117 VQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMN 176
+ + ++ED R+LRAIR A+L S E A ++ L+ + + R E+
Sbjct: 167 LTLIGDPDVRYREDPVRMLRAIRFTAKLDLEISPECAEPIRRLANLLQDIPAARHFDEVI 226
Query: 177 YMLAYGSAEASLRLLWKFGLLEVLLPI 203
+L G + RLL ++ LL+VL PI
Sbjct: 227 KLLLSGQGLQTYRLLKEYKLLQVLFPI 253
>gi|84394000|ref|ZP_00992739.1| polyA polymerase [Vibrio splendidus 12B01]
gi|84375394|gb|EAP92302.1| polyA polymerase [Vibrio splendidus 12B01]
Length = 451
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 13/217 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A +++ +F C ++G+RF + H+ F I+EV++F + S+
Sbjct: 63 LLGSQPKDFDIATNATPEQIKNLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSK 122
Query: 61 DFKYEFERPIGCDEKDFIRWR-------NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ + DE +R + +RDFTIN + ++ I+DY GG+ED+
Sbjct: 123 NVSAQ------SDEGMLLRDNVYGNVDEDAERRDFTINAMYYNIADYSIHDYAGGVEDLE 176
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LRA+R AA+L F +TA ++ L+ + + RL
Sbjct: 177 DKLIRLIGDPETRYREDPVRMLRAMRFAAKLDFDIEEDTADPIEELAHLLKDIPAARLYE 236
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + L+ ++ L + + P A + +
Sbjct: 237 ESLKLLQSGHGLETYHLMREYNLFQQMFPAIAEHFTE 273
>gi|126207664|ref|YP_001052889.1| poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|126096456|gb|ABN73284.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 510
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L PKDFD+ T+A+ +E+ ++F QC ++G+RF + H+ F I EV++F +
Sbjct: 112 LLGHKPKDFDVATNAKPEEIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHN 171
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + +RDF++N L +DP +I+D+ GI D++ K+
Sbjct: 172 SDKISKVSEEGMLLRDNVYGTLREDAQRRDFSVNSLYYDPKHNLIFDFFDGIADLKAGKL 231
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LRA+R A+L + + ++ L+ + + RL E
Sbjct: 232 RLIGDPVVRYQEDPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLK 291
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ G + +L+ ++GL E L P+ + + R D + +LS
Sbjct: 292 LFQSGQGFKTYQLMRQYGLFEQLFPVLTPFFTE----RNDSNAERMLS 335
>gi|303250925|ref|ZP_07337116.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|303252000|ref|ZP_07338171.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|307247163|ref|ZP_07529214.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|307251707|ref|ZP_07533611.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307260634|ref|ZP_07542326.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|307262766|ref|ZP_07544393.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|302649430|gb|EFL79615.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|302650231|gb|EFL80396.1| polyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306856301|gb|EFM88453.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306860793|gb|EFM92802.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306869711|gb|EFN01496.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306871911|gb|EFN03628.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 510
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L PKDFD+ T+A+ +E+ ++F QC ++G+RF + H+ F I EV++F +
Sbjct: 112 LLGHKPKDFDVATNAKPEEIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHN 171
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + +RDF++N L +DP +I+D+ GI D++ K+
Sbjct: 172 SDKISKVSEEGMLLRDNVYGTLREDAQRRDFSVNSLYYDPKHNLIFDFFDGIADLKAGKL 231
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LRA+R A+L + + ++ L+ + + RL E
Sbjct: 232 RLIGDPVVRYQEDPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLK 291
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ G + +L+ ++GL E L P+ + + R D + +LS
Sbjct: 292 LFQSGQGFKTYQLMRQYGLFEQLFPVLTPFFTE----RNDSNAERMLS 335
>gi|307256202|ref|ZP_07537989.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306865383|gb|EFM97279.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 510
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L PKDFD+ T+A+ +E+ ++F QC ++G+RF + H+ F I EV++F +
Sbjct: 112 LLGHKPKDFDVATNAKPEEIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHN 171
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + +RDF++N L +DP +I+D+ GI D++ K+
Sbjct: 172 SDKISKVSEEGMLLRDNVYGTLREDAQRRDFSVNSLYYDPKHNLIFDFFDGIADLKAGKL 231
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LRA+R A+L + + ++ L+ + + RL E
Sbjct: 232 RLIGDPVVRYQEDPVRMLRAVRFMAKLDMFLDKASDTPIRELAHLLKNIPAARLFDESLK 291
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ G + +L+ ++GL E L P+ + + R D + +LS
Sbjct: 292 LFQSGQGFKTYQLMRQYGLFEQLFPVLTPFFTE----RNDSNAERMLS 335
>gi|399543615|ref|YP_006556923.1| poly(A) polymerase [Marinobacter sp. BSs20148]
gi|399158947|gb|AFP29510.1| Poly(A) polymerase [Marinobacter sp. BSs20148]
Length = 453
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 140/309 (45%), Gaps = 28/309 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSG----- 55
+L+ PKDFDI T A +EV +F ++G+RF I HV F ++EV++F +
Sbjct: 70 LLSGQPKDFDIATDATPEEVHELFRNSRLIGRRFRIVHVVFGREVIEVTTFRGNANPADD 129
Query: 56 ----RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R+ S + + G E+D L+RDFTIN L + + D+ GI+D
Sbjct: 130 DDDDRKTSEHGQLLRDNVYGNLEED------ALRRDFTINALYYCIRDFSVIDFANGIDD 183
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ +++ + T ++ED R+LRAIR AA+L F T ++ L+P + + RL
Sbjct: 184 LNNRQMRLIGDPETRYREDPVRMLRAIRFAAKLDFAIEPATEAPIRELAPLLTHIPAARL 243
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E+ + + G EA+ L + LL L P A+ L + L+ N D
Sbjct: 244 FDEVLKLFSAGYGEATFDKLRHYDLLAPLFPDTASALAA------GEPDELIRQALRNTD 297
Query: 232 KLLAPDRPCH------SSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIA 285
+A + + LW A+ A + D DP+ A+ S G ++A I
Sbjct: 298 ARIAQGKSVTPYFLFAAMLWPALQAEWRRCQDNG-DPVQPALHSAISKVIGRQVQATSIP 356
Query: 286 RRINKSHDE 294
+R + E
Sbjct: 357 KRFSGPMKE 365
>gi|307249388|ref|ZP_07531380.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
gi|306858574|gb|EFM90638.1| PolyA polymerase [Actinobacillus pleuropneumoniae serovar 4 str.
M62]
Length = 510
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 114/228 (50%), Gaps = 7/228 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L PKDFD+ T+A+ +E+ ++F QC ++G+RF + H+ F I EV++F +
Sbjct: 112 LLGHKPKDFDVATNAKPEEIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHN 171
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + +RDF++N L +DP +I+D+ GI D++ K+
Sbjct: 172 SDKISKVSEEGMLLRDNVYGTLREDAQRRDFSVNSLYYDPKHNLIFDFFDGIADLKAGKL 231
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ +QED R+LRA+R A+L + + ++ L+ + + RL E
Sbjct: 232 HLIGDPVVRYQEDPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLK 291
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ G + +L+ ++GL E L P+ + + R D + +LS
Sbjct: 292 LFQSGQGFKTYQLMRQYGLFEPLFPVLTPFFTE----RNDSNAERMLS 335
>gi|312795197|ref|YP_004028119.1| Poly(A) polymerase / tRNA-nucleotidyltransferase [Burkholderia
rhizoxinica HKI 454]
gi|312166972|emb|CBW73975.1| Poly(A) polymerase (EC 2.7.7.19) / tRNA-nucleotidyltransferase (EC
2.7.7.25) [Burkholderia rhizoxinica HKI 454]
Length = 572
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 26/216 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+LN PKDFD+ T A EVV++F + ++G+RF I HV F I+EVS+F
Sbjct: 147 LLNIAPKDFDVATDATPDEVVKLFRRARLIGRRFQIVHVQFGQEIIEVSTFRALMDAVPA 206
Query: 52 ---------STSGRRFSR---DFKYEFERPIGCDEKDFIRW----RNCLQRDFTINGLMF 95
+ R+ R D + G +D + W + +RDFT+N + +
Sbjct: 207 DVGSADSAPAAPPRKLRRGELDRRTHAVDASGRVLRDNV-WGEQHEDATRRDFTVNAMYY 265
Query: 96 DPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHF 155
DP + + DY G++DIR ++ + +T F+ED R+LR +R AA+LGF T
Sbjct: 266 DPATQTVLDYHRGMDDIRARVLRMIGEPATRFREDPVRMLRVVRFAAKLGFTIESSTHAP 325
Query: 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLL 191
+ L+ I + RL EM +L G A L+ L
Sbjct: 326 IAKLADLINNVPAARLFDEMLKLLLSGHALGCLKQL 361
>gi|53728854|ref|ZP_00134674.2| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
Length = 492
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L PKDFD+ T+A+ +E+ ++F QC ++G+RF + H+ F I EV++F +
Sbjct: 112 LLGHKPKDFDVATNAKPEEIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHN 171
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + +RDF++N L +DP +I+D+ GI D++ K+
Sbjct: 172 SDKISKVSEEGMLLRDNVYGTLREDAQRRDFSVNSLYYDPKHNLIFDFFDGIADLKAGKL 231
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LRA+R A+L + + ++ L+ + + RL E
Sbjct: 232 RLIGDPVVRYQEDPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLK 291
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ G + +L+ ++GL E L P+ + + R D + +LS
Sbjct: 292 LFQSGQGFKTYQLMRQYGLFEQLFPVLTPFFTE----RNDSNAERMLS 335
>gi|372266931|ref|ZP_09502979.1| poly(A) polymerase [Alteromonas sp. S89]
Length = 486
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 130/274 (47%), Gaps = 21/274 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T A ++ ++F IVG+RF I H ++EV++F G
Sbjct: 94 LLGGHPKDFDVATDATPEQAKQLFRGARIVGRRFRILHARIGREVIEVTTFR--GHHSDG 151
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ + G +D + + ++RDFT+N L + I+DY GGI+DI + +
Sbjct: 152 EAHEAQQSEHGMLLRDNVYGDLESDAVRRDFTVNALYYTTNGFEIHDYTGGIQDIEQRLI 211
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +T ++ED R+LRA+R AA+L F TA ++ L+P + + RL E+
Sbjct: 212 RMIGDPATRYKEDPVRMLRAVRFAAKLDFDIEPGTAAPLRELAPLLRNIAPARLFDEVLK 271
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLP--------IQAAYLVKHGFRRRDKRSNLLLSLFSN 229
+L G+ E + LL ++ L L P +A L + R D R
Sbjct: 272 LLMSGNGERTFELLREYELWSHLFPDNARMLESPEALALTRQALRNTDTR--------IR 323
Query: 230 LDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPL 263
D+ + P + LW A+ + K LSD+ P+
Sbjct: 324 SDQRVTPAFLYAALLWPAVNSEQKFLSDKGIPPV 357
>gi|350532352|ref|ZP_08911293.1| poly(A) polymerase [Vibrio rotiferianus DAT722]
Length = 455
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 14/218 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 65 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQKN 124
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ K + G ++D R RDFTIN + ++ I+DY GIED+
Sbjct: 125 KNVSQQSKEGMLLRDNVYGTIDEDAER------RDFTINSMYYNIADYSIHDYARGIEDL 178
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
++ + T ++ED R+LRA+R A +L F +TA ++ ++P + + RL
Sbjct: 179 EDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEEMAPLLRDIPSARLF 238
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E ML G + LL ++ L + L P A + +
Sbjct: 239 EESLKMLQSGHGLETYHLLREYNLFQQLFPAIAEHFTE 276
>gi|218710491|ref|YP_002418112.1| poly(A) polymerase [Vibrio splendidus LGP32]
gi|218323510|emb|CAV19687.1| Poly(A) polymerase [Vibrio splendidus LGP32]
Length = 472
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 13/217 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A +++ +F C ++G+RF + H+ F I+EV++F + S+
Sbjct: 84 LLGSQPKDFDIATNATPEQIKHLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEPSK 143
Query: 61 DFKYEFERPIGCDEKDFIRWR-------NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ + DE +R + +RDFTIN + ++ I+DY GG+ED+
Sbjct: 144 NVSAQ------SDEGMLLRDNVYGNVDEDAERRDFTINAMYYNIADYSIHDYAGGVEDLE 197
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LRA+R AA+L F +TA ++ L+ + + RL
Sbjct: 198 DKLIRLIGDPETRYREDPVRMLRAMRFAAKLDFDIEEDTADPIEELAHLLKDIPAARLYE 257
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + L+ ++ L + + P A + +
Sbjct: 258 ESLKLLQSGHGLETYHLMREYNLFQQMFPSVAEHFTE 294
>gi|190149447|ref|YP_001967972.1| poly(A) polymerase [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|189914578|gb|ACE60830.1| putative poly(A) polymerase [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
Length = 521
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 115/228 (50%), Gaps = 7/228 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFS-QCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS 59
+L PKDFD+ T+A+ +E+ ++F QC ++G+RF + H+ F I EV++F +
Sbjct: 123 LLGHKPKDFDVATNAKPEEIQKIFGRQCRLIGRRFRLAHIVFGRDIYEVATFRADHASHN 182
Query: 60 RD--FKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D K E + D + +RDF++N L +DP +I+D+ GI D++ K+
Sbjct: 183 SDKISKVSEEGMLLRDNVYGTLREDAQRRDFSVNSLYYDPKHNLIFDFFDGIADLKAGKL 242
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +QED R+LRA+R A+L + + ++ L+ + + RL E
Sbjct: 243 RLIGDPVVRYQEDPVRMLRAVRFMAKLDMFLDKPSDTPIRELAHLLKNIPAARLFDESLK 302
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ G + +L+ ++GL E L P+ + + R D + +LS
Sbjct: 303 LFQSGQGFKTYQLMRQYGLFEQLFPVLTPFFTE----RNDSNAERMLS 346
>gi|261364589|ref|ZP_05977472.1| poly(A) polymerase [Neisseria mucosa ATCC 25996]
gi|288567172|gb|EFC88732.1| poly(A) polymerase [Neisseria mucosa ATCC 25996]
Length = 447
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 26/241 (10%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV +EV++F G+ R
Sbjct: 71 PKDFDVATDATPEQVRKIFRRSRIIGRRFQIVHVMTGPETIEVTTFRGGGKVQQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ G+ DI +
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPICEEILDFHNGVNDIAARSLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ A+ ++ED RILRA+R++ +LGF TA + + + RL E+ +
Sbjct: 179 MIGDAAERYREDPVRILRAVRLSGKLGFSVEESTAAPIPEYASRLKHEPVARLFDEIMKL 238
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSL-FSNLDKLLAPD 237
L G A L+ L G+ + + P+ A + +K N ++SL N D+ L D
Sbjct: 239 LFSGHARECLKKLNSLGVSDDIHPLLTA------LKSAEKAENRIISLALKNTDERLRQD 292
Query: 238 R 238
+
Sbjct: 293 K 293
>gi|78065319|ref|YP_368088.1| poly(A) polymerase [Burkholderia sp. 383]
gi|77966064|gb|ABB07444.1| Poly(A) polymerase, PcnB [Burkholderia sp. 383]
Length = 512
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 105/215 (48%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPE 156
Query: 54 -----SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 157 AAAAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 212
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ D+R ++ + +T F+ED R+LR +R AA+LGF T +
Sbjct: 213 TQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPINA 272
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L L K
Sbjct: 273 LADLINNVPAARLFDEMLKLLLSGHALACLTQLRK 307
>gi|332526336|ref|ZP_08402462.1| poly(A) polymerase [Rubrivivax benzoatilyticus JA2]
gi|332110472|gb|EGJ10795.1| poly(A) polymerase [Rubrivivax benzoatilyticus JA2]
Length = 515
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 127/272 (46%), Gaps = 23/272 (8%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSF---------- 51
PKDFD+ T A ++V +F + I+G+RF + HV F E+ ++EVS+F
Sbjct: 79 PKDFDVATDATPEQVKALFRRAFIIGRRFRLVHVIFGRGREHEVIEVSTFRAYFDAAAAE 138
Query: 52 STSGRRFSRDFKYEFERPIGCDEKDFIR---W----RNCLQRDFTINGLMFDPYAKIIYD 104
G + + +R + +R W + +RDFTIN + +DP +++ D
Sbjct: 139 QVKGNEKTARGEIADQRVVVDASGRVLRDNVWGPQIEDAARRDFTINAMYYDPTTQVVVD 198
Query: 105 YIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSIL 164
Y GG+ D R ++ + T ++ED RI+R +RIAA+LGF T ++ ++ +
Sbjct: 199 YHGGLADSRARVLRMIGDPETRYREDPVRIVRVVRIAAKLGFEVEPATRAPMRKMAALLN 258
Query: 165 KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL 224
+ R+ EM +L G A SL L K GL + + P+ A R KR +
Sbjct: 259 NVPPSRMFDEMVKLLQTGHALKSLAELKKQGLDQGVFPVLDAAFRADA--RHPKRDEFIR 316
Query: 225 SLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
+ D + R S +A++ +H L
Sbjct: 317 YALEDTDARVNDGRAVVPSFMLAVMLWHDVLD 348
>gi|114319723|ref|YP_741406.1| poly(A) polymerase [Alkalilimnicola ehrlichii MLHE-1]
gi|114226117|gb|ABI55916.1| poly(A) polymerase [Alkalilimnicola ehrlichii MLHE-1]
Length = 479
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 147/343 (42%), Gaps = 60/343 (17%)
Query: 2 LNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST-------- 53
L PKDFD+ T A +EV +F C ++G+RF + HV F I+EV++F
Sbjct: 82 LGHEPKDFDVATDARPEEVRELFRNCRLIGRRFRLAHVQFGREIIEVATFRALHDPESQD 141
Query: 54 -------------------------SGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDF 88
R RD Y G E+D L+RDF
Sbjct: 142 DDEADGDFDDDDVEVRDRAVGEVAFENGRIVRDNVY------GTLEED------ALRRDF 189
Query: 89 TINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRF 148
TIN L ++ + D+ GG++D+ + ++ + T ++ED R+LRA+R AA+LGFR
Sbjct: 190 TINALYYNIADFSVVDHAGGLKDLDQGVIRLMGDPETRYREDPVRMLRAVRFAAKLGFRI 249
Query: 149 SRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL 208
+TA + ++ + ++ RL E+ + G A + +L + GL L P+ +
Sbjct: 250 HPDTAEPLPRMAHLLAEVPPARLFDEVLKLFMGGLAAETFEMLRQHGLFAPLFPMTEREI 309
Query: 209 V--KHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQPR 260
+HG + + N D+ + +P + LW A++A AL +
Sbjct: 310 EADQHGV-----VLSFIAQALKNTDERIENGKPVTPAFLFAALLWPAVVARSLALQAEED 364
Query: 261 DPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPR 303
P V A+ A ++V I +R E + L+PR
Sbjct: 365 VPPVPALQQAAAEIQRRQRQSVAIPKRFGIPMGEIWT--LQPR 405
>gi|211638719|emb|CAR67336.1| poly(a) polymerase (ec 2.7.7.19) (pap) (plasmid copy number
protein) [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
Length = 494
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 127/271 (46%), Gaps = 18/271 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A ++V ++F C +VG+RF + H+ F ++EV++F G
Sbjct: 100 LLGTKPKDFDIATNATPEQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFR--GPHEQT 157
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D E + +R + ++RDFTIN L + + DY+GG+ D+
Sbjct: 158 DANNEKNQSQQAQSGMLLRDNTFGSIEEDAMRRDFTINSLYYGINDFSLRDYVGGLNDLE 217
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LRAIR A++L S +TA + L+ + + RL
Sbjct: 218 TGVIRLIGDPETRYREDPVRMLRAIRFASKLNMTISEDTAEPISRLAFLLSHIPPARLFE 277
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E +L G ++ + L ++ L + L P+ Y + ++L + N D
Sbjct: 278 ESLKLLQTGQGYSTYKRLREYHLFQPLFPLVERYFTANN---DSPMEHMLNQVLKNTDYR 334
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQ 258
L D+ + + LW ++ + LS +
Sbjct: 335 LQNDKRVNPAFLFAAMLWYPLIEHAEKLSQE 365
>gi|407790578|ref|ZP_11137671.1| poly(A) polymerase I [Gallaecimonas xiamenensis 3-C-1]
gi|407203701|gb|EKE73686.1| poly(A) polymerase I [Gallaecimonas xiamenensis 3-C-1]
Length = 452
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFDI+T+A ++ ++F C +VG+RF + H+ F I+EV++F S +
Sbjct: 73 PKDFDIVTNARPDDIRKLFRNCRLVGRRFRLAHILFGREIIEVATFRGS--------LTD 124
Query: 66 FERPIGCDEKDFIR--------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
DE +R + L+RDFTIN L ++ I D+ GG+ +++ ++
Sbjct: 125 NPDAARSDEGMLLRDNAYSDSVEEDALRRDFTINALYYNIADYSILDFAGGLRALKQRRI 184
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + +T ++ED R+LRA+R A +L + +TA ++ L+P + + RL E
Sbjct: 185 ELIGDPATRYREDPVRMLRAVRFATKLDMSIAPDTAKPIRELAPLLDDIPAARLFEECLK 244
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRR 215
+ G + R+L +GL + L P +L RR
Sbjct: 245 LFMAGHGLDNFRMLCDYGLFQRLFPSLVPFLDDPKARR 282
>gi|343494372|ref|ZP_08732634.1| poly(A) polymerase [Vibrio nigripulchritudo ATCC 27043]
gi|342825277|gb|EGU59776.1| poly(A) polymerase [Vibrio nigripulchritudo ATCC 27043]
Length = 410
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 17/211 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 23 LLGEQPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATF--------R 74
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
E + + K+ + R+ + +RDFTIN + + I+DY GGI+D
Sbjct: 75 GHHQEPTKNVAAQSKEGMLLRDNVYGTVDEDAERRDFTINAMYYSIADYSIHDYAGGIDD 134
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + T ++ED R+LRAIR AA+L +TA +K L+ + + RL
Sbjct: 135 LDDNLIRLIGDPETRYREDPVRMLRAIRFAAKLDMDIDEDTAAPIKELAHLLRDIPAARL 194
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
E +L G+ + LL ++ L + L P
Sbjct: 195 FEESLKLLQSGNGLETYHLLREYDLFQQLFP 225
>gi|387901427|ref|YP_006331766.1| poly(A) polymerase [Burkholderia sp. KJ006]
gi|387576319|gb|AFJ85035.1| Poly(A) polymerase [Burkholderia sp. KJ006]
Length = 519
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 26/208 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------------ 53
PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 109 PKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAPAE 168
Query: 54 SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPYAKIIY 103
+R RD E +R G +D + W + +RDFTIN + +DP + +
Sbjct: 169 PPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPSTQTVL 224
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T +K L+ I
Sbjct: 225 DYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIEPHTREPIKPLADLI 284
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLL 191
+ RL EM +L G A A L+ L
Sbjct: 285 NNVPAARLFDEMLKLLLSGHALACLKQL 312
>gi|392552432|ref|ZP_10299569.1| poly(A) polymerase [Pseudoalteromonas spongiae UST010723-006]
Length = 429
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 130/280 (46%), Gaps = 21/280 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD++T+A +++ + F C ++G+RF + H+ F I+EV++ S + + E
Sbjct: 41 PKDFDVVTNATPEQIKKQFRNCRLIGRRFRLAHIMFGREIIEVATMRGH---HSDEEQGE 97
Query: 66 FERPIGCDEKDFIRWR-------NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+ ++ +R + +RDF+IN L + I+D+ GG+E I+ +++
Sbjct: 98 KNKSQASEQGQLLRDNVYGTIDEDAERRDFSINALYYSINDFSIHDFAGGMEAIKNRRIE 157
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ T ++ED R+LRA+R A +L + T + L+ + + RL EM +
Sbjct: 158 LIGDPETRYREDPVRMLRAVRFATKLDMTIAPATEKPMFQLASLLGNIPAARLFEEMLKL 217
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
G AEA+ LL ++GL L P L KH L+ + N DK + +
Sbjct: 218 FLNGKAEANFHLLRQYGLFTYLFPALDKLLNKHP---DGTEYQLVTQVLKNTDKRINAGK 274
Query: 239 PCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAV 272
+ LW + + ++ Q P F++A+
Sbjct: 275 KVTPAYLIAAFLWYPLQSLANRITAQGETPF--NAFNMAM 312
>gi|238026306|ref|YP_002910537.1| polynucleotide adenylyltransferase [Burkholderia glumae BGR1]
gi|237875500|gb|ACR27833.1| putative polynucleotide adenylyltransferase [Burkholderia glumae
BGR1]
Length = 525
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 106/218 (48%), Gaps = 31/218 (14%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 106 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPAD 165
Query: 54 ----------SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGL 93
RR RD E +R G +D + W + +RDFTIN +
Sbjct: 166 APASAPADAAPPRRMKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAM 221
Query: 94 MFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETA 153
+DP + + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T
Sbjct: 222 YYDPATQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEPHTR 281
Query: 154 HFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLL 191
++ L+ I + RL EM +L G A A LR L
Sbjct: 282 EPIQPLADLINNVPAARLFDEMLKLLLSGHALACLRQL 319
>gi|329119544|ref|ZP_08248228.1| poly(A) polymerase [Neisseria bacilliformis ATCC BAA-1200]
gi|327464331|gb|EGF10632.1| poly(A) polymerase [Neisseria bacilliformis ATCC BAA-1200]
Length = 467
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 23/260 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
++ PKDFD+ T A +EV +F + I+G+RF I HV +EV++F +G
Sbjct: 81 LIGAQPKDFDVATDATPEEVRALFRRSRIIGRRFRIVHVQVGPETIEVTTFRGNGGAVQN 140
Query: 57 ---RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R +D Y G +D R RDFT N L FDP + I+D+ G++D+R
Sbjct: 141 EQGRIMKDNTY------GTLAEDAGR------RDFTCNALYFDPVKREIHDFHHGVQDVR 188
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+ ++ + + +QED RILRAIR+A +LGF TA + + + RL
Sbjct: 189 QRRIVMIGNPAERYQEDPVRILRAIRLAGKLGFTIEERTAAPAADYAGRLKEEPPARLFD 248
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ +L G A L + G+ + P+ A D ++ N D+
Sbjct: 249 EITKLLFSGHAGRCLGQIRALGIAARIHPLLDALQQAAA----DGSGGIIGESLRNTDER 304
Query: 234 LAPDRPCHSSLWIAILAFHK 253
+ D+ + +A L + K
Sbjct: 305 VRADKSVSAGFVLAALMWDK 324
>gi|374620577|ref|ZP_09693111.1| poly(A) polymerase [gamma proteobacterium HIMB55]
gi|374303804|gb|EHQ57988.1| poly(A) polymerase [gamma proteobacterium HIMB55]
Length = 419
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 114/252 (45%), Gaps = 11/252 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T A +++V +F I+G+RF I HV I+EV++F G
Sbjct: 44 LLGKRPKDFDVATDATPEQIVALFRGARIIGRRFQIVHVRMGREIIEVTTFR--GHHEGD 101
Query: 61 DFKYEFERPIGCDEKDFIRW---RNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
K + G +D + ++ +RD TIN L DP +IYD + G+ DI++ +
Sbjct: 102 SSKVAAKSNKGLLIRDNVYGTLDQDAARRDLTINALYLDPVNNLIYDDLDGLADIQRRTI 161
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + + ++ED R+LR R AA+LGF T + + + RL E
Sbjct: 162 RIIGDPAARYREDPVRMLRVARFAAKLGFNIDASTQGAIAECRHLLADIPSARLFDEAIK 221
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G A ++L L + LLE L P L G L+ N D +A
Sbjct: 222 LFMSGHATSTLEQLIRHDLLETLFPEAVNALHLKGAH------ELISQAMKNTDGRIARG 275
Query: 238 RPCHSSLWIAIL 249
+P + A L
Sbjct: 276 KPVTPAFLFAAL 287
>gi|330815625|ref|YP_004359330.1| putative polynucleotide adenylyltransferase [Burkholderia gladioli
BSR3]
gi|327368018|gb|AEA59374.1| putative polynucleotide adenylyltransferase [Burkholderia gladioli
BSR3]
Length = 533
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 104/210 (49%), Gaps = 28/210 (13%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------------ 53
PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 113 PKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPAEAPPAD 172
Query: 54 --SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPYAKI 101
RR RD E +R G +D + W + +RDFTIN + +DP +
Sbjct: 173 APPPRRMKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPATQT 228
Query: 102 IYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSP 161
+ DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T +K L+
Sbjct: 229 VLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIEPHTRDPIKPLAD 288
Query: 162 SILKLDRGRLLMEMNYMLAYGSAEASLRLL 191
I + RL EM +L G A A L+ L
Sbjct: 289 LINNVPAARLFDEMLKLLLSGHALACLKQL 318
>gi|421557057|ref|ZP_16002966.1| poly(A) polymerase [Neisseria meningitidis 80179]
gi|421558572|ref|ZP_16004450.1| poly(A) polymerase [Neisseria meningitidis 92045]
gi|402335742|gb|EJU71006.1| poly(A) polymerase [Neisseria meningitidis 80179]
gi|402337315|gb|EJU72563.1| poly(A) polymerase [Neisseria meningitidis 92045]
Length = 453
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 121/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV +EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ET ++ SI +L RL E+
Sbjct: 179 MIGDAAERYQEDPVRILRAIRLSGKLGFELSEET---TAPIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|134294830|ref|YP_001118565.1| poly(A) polymerase [Burkholderia vietnamiensis G4]
gi|134137987|gb|ABO53730.1| poly(A) polymerase [Burkholderia vietnamiensis G4]
Length = 517
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 26/208 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------------ 53
PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 107 PKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPEAAPAE 166
Query: 54 SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPYAKIIY 103
+R RD E +R G +D + W + +RDFTIN + +DP + +
Sbjct: 167 PPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPSTQTVL 222
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T +K L+ I
Sbjct: 223 DYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIEPHTREPIKPLADLI 282
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLL 191
+ RL EM +L G A A L+ L
Sbjct: 283 NNVPAARLFDEMLKLLLSGHALACLKQL 310
>gi|161760588|ref|YP_069273.2| poly(A) polymerase [Yersinia pseudotuberculosis IP 32953]
gi|186894092|ref|YP_001871204.1| poly(A) polymerase I [Yersinia pseudotuberculosis PB1/+]
gi|186697118|gb|ACC87747.1| poly(A) polymerase [Yersinia pseudotuberculosis PB1/+]
Length = 488
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 96 LLGRKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 149
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 150 ---HEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRRDFTINSLYYGISDFALRDY 206
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 207 TGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMSISPETAEPIPRLASLLRE 266
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A + +L+
Sbjct: 267 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEQ---HDSPMERILVQ 323
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 324 VLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 362
>gi|161511462|ref|NP_991684.2| poly(A) polymerase [Yersinia pestis biovar Microtus str. 91001]
Length = 491
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 96 LLGRKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 149
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 150 ---HEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRRDFTINSLYYGISDFALRDY 206
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 207 TGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMSISPETAEPIPRLASLLRE 266
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A + +L+
Sbjct: 267 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEQ---HDSPMERILVQ 323
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 324 VLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 362
>gi|189220183|ref|YP_001940823.1| tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum
infernorum V4]
gi|189187041|gb|ACD84226.1| tRNA nucleotidyltransferase/poly(A) polymerase [Methylacidiphilum
infernorum V4]
Length = 443
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 103/208 (49%), Gaps = 18/208 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQ--CEIVGKRFPICHVHFENTIVEVSSFST----S 54
+L + P D DI TSA +V +F + ++GK F + V EV++F T
Sbjct: 30 LLKKEPHDIDIATSATPDQVQNLFKEKASGLIGKSFGVIRVKSGAHFFEVATFRTDIGSQ 89
Query: 55 GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
G R+ + ++ + + L+RDFTING+ +DP I DY+GG EDI K
Sbjct: 90 GGRWPKAVQFSTPK------------EDALRRDFTINGIFYDPLTGTIIDYVGGSEDIEK 137
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
+++ + F+ED R+LRAIR A RLGF +T ++ + I ++ R+ E
Sbjct: 138 KRIRAIGDPKIRFEEDHLRLLRAIRFAVRLGFSIEEKTWEAIQSSAHKITQISPERIREE 197
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLP 202
++ + L LL + GLL +LP
Sbjct: 198 LDKIFTGPDPAKGLELLDQSGLLRFILP 225
>gi|22124701|ref|NP_668124.1| poly(A) polymerase [Yersinia pestis KIM10+]
gi|108808891|ref|YP_652807.1| poly(A) polymerase I [Yersinia pestis Antiqua]
gi|108810855|ref|YP_646622.1| poly(A) polymerase I [Yersinia pestis Nepal516]
gi|145600216|ref|YP_001164292.1| poly(A) polymerase I [Yersinia pestis Pestoides F]
gi|153948549|ref|YP_001402297.1| poly(A) polymerase I [Yersinia pseudotuberculosis IP 31758]
gi|165936780|ref|ZP_02225347.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. IP275]
gi|170025685|ref|YP_001722190.1| poly(A) polymerase I [Yersinia pseudotuberculosis YPIII]
gi|218930416|ref|YP_002348291.1| poly(A) polymerase [Yersinia pestis CO92]
gi|270489241|ref|ZP_06206315.1| polynucleotide adenylyltransferase [Yersinia pestis KIM D27]
gi|384123570|ref|YP_005506190.1| poly(A) polymerase I [Yersinia pestis D106004]
gi|384138753|ref|YP_005521455.1| poly(A) polymerase I [Yersinia pestis A1122]
gi|421764907|ref|ZP_16201695.1| poly(A) polymerase I [Yersinia pestis INS]
gi|21957515|gb|AAM84375.1|AE013681_5 poly(A) polymerase I [Yersinia pestis KIM10+]
gi|108774503|gb|ABG17022.1| poly(A) polymerase [Yersinia pestis Nepal516]
gi|108780804|gb|ABG14862.1| poly(A) polymerase [Yersinia pestis Antiqua]
gi|145211912|gb|ABP41319.1| poly(A) polymerase [Yersinia pestis Pestoides F]
gi|152960044|gb|ABS47505.1| poly(A) polymerase [Yersinia pseudotuberculosis IP 31758]
gi|165915429|gb|EDR34039.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str. IP275]
gi|169752219|gb|ACA69737.1| poly(A) polymerase [Yersinia pseudotuberculosis YPIII]
gi|262363166|gb|ACY59887.1| poly(A) polymerase I [Yersinia pestis D106004]
gi|270337745|gb|EFA48522.1| polynucleotide adenylyltransferase [Yersinia pestis KIM D27]
gi|342853882|gb|AEL72435.1| poly(A) polymerase I [Yersinia pestis A1122]
gi|411174458|gb|EKS44491.1| poly(A) polymerase I [Yersinia pestis INS]
Length = 491
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 96 LLGRKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 149
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 150 ---HEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRRDFTINSLYYGISDFALRDY 206
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 207 TGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMSISPETAEPIPRLASLLRE 266
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A + +L+
Sbjct: 267 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEQ---HDSPMERILVQ 323
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 324 VLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 362
>gi|45435001|gb|AAS60561.1| poly(A) polymerase [Yersinia pestis biovar Microtus str. 91001]
Length = 473
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 131/279 (46%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 78 LLGRKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 131
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 132 ---HEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRRDFTINSLYYGISDFALRDY 188
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 189 TGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMSISPETAEPIPRLASLLRE 248
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A + + +L+
Sbjct: 249 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTE---QHDSPMERILVQ 305
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 306 VLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 344
>gi|253988289|ref|YP_003039645.1| poly(A) polymerase [Photorhabdus asymbiotica]
gi|253779739|emb|CAQ82900.1| poly(A) polymerase [Photorhabdus asymbiotica]
Length = 523
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 127/271 (46%), Gaps = 18/271 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFDI T+A ++V ++F C +VG+RF + H+ F ++EV++F G
Sbjct: 129 LLGTKPKDFDIATNATPEQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFR--GPHEQT 186
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D E + +R + ++RDFTIN L + + DY+GG+ D+
Sbjct: 187 DANNEKNQSQQAQSGMLLRDNTFGSIEEDAMRRDFTINSLYYGINDFSLRDYVGGLNDLE 246
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LRAIR A++L S +TA + L+ + + RL
Sbjct: 247 TGVIRLIGDPETRYREDPVRMLRAIRFASKLNMTISEDTAEPISRLAFLLSHIPPARLFE 306
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E +L G ++ + L ++ L + L P+ Y + ++L + N D
Sbjct: 307 ESLKLLQTGQGYSTYKRLREYHLFQPLFPLVERYFTANN---DSPMEHMLNQVLKNTDYR 363
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQ 258
L D+ + + LW ++ + LS +
Sbjct: 364 LQNDKRVNPAFLFAAMLWYPLIEHAEKLSQE 394
>gi|114048784|ref|YP_739334.1| poly(A) polymerase [Shewanella sp. MR-7]
gi|113890226|gb|ABI44277.1| poly(A) polymerase [Shewanella sp. MR-7]
Length = 435
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 125/255 (49%), Gaps = 8/255 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++F G
Sbjct: 42 LLGLEPKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFR--GHHGDS 99
Query: 61 DFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ K G +D + + +RDFT+N L +D I Y GG++D++ +
Sbjct: 100 NEKISKANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMDDLKAGTL 159
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L TA +K L+P + + R+ E+
Sbjct: 160 RLIGDPETRYREDPVRMLRAVRFATKLSMTIDEVTAKPIKQLAPLLKDIPAARMYEEVLK 219
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G A A+ ++ ++ L L P A L + ++ ++ + D + D
Sbjct: 220 LFFAGKAMANFEMMQEYKLFAPLFPQVDAQLKDAP---KGPAMKMVQAIMKSTDARVNED 276
Query: 238 RPCHSSLWIAILAFH 252
+P S + A + ++
Sbjct: 277 KPVTPSFFYAAILWY 291
>gi|332535564|ref|ZP_08411337.1| poly(A) polymerase [Pseudoalteromonas haloplanktis ANT/505]
gi|332035021|gb|EGI71540.1| poly(A) polymerase [Pseudoalteromonas haloplanktis ANT/505]
Length = 493
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 130/271 (47%), Gaps = 20/271 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD++T+A +V ++F C ++G+RF + H+ F I+EV++ G ++
Sbjct: 106 LLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVATMR--GHHEAQ 163
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ K + + +E +R + +RDF+IN L + I+DY G+ I+
Sbjct: 164 EDKNQISQ--SSNEGQLLRDNVFGSIEEDAERRDFSINALYYSIKDFSIHDYANGLAAIK 221
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+++ + T ++ED R+LRA+R A +L + ++ + L+ + + RL
Sbjct: 222 AKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPKSEKPISELASLLDNIPPARLFE 281
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G AEA+ +L K+GL L P L K+ L+ +F N DK
Sbjct: 282 EILKLFLNGKAEANFLMLRKYGLFRSLFPELDKILDKNP---SGLEHTLIQQMFQNTDKR 338
Query: 234 LAPDRPCHSS------LWIAILAFHKALSDQ 258
+ D+ + LW +L K + Q
Sbjct: 339 INADKKVTPAFIFAALLWFPLLERTKKIQSQ 369
>gi|261379064|ref|ZP_05983637.1| poly(A) polymerase [Neisseria cinerea ATCC 14685]
gi|269144521|gb|EEZ70939.1| poly(A) polymerase [Neisseria cinerea ATCC 14685]
Length = 453
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 125/256 (48%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV ++EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEVIEVTTFRGGAKVHQNARGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ G+ DI + K+
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGMADIAERKLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S+ TA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSQATA---GPIAESIGRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L +F + + + P+ A + G ++ N D+ L
Sbjct: 236 MKLLFSGHARECLKRLKEFDVPDDIHPLFNALNISDGM-----DGKMIGLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|417954941|ref|ZP_12597969.1| poly(A) polymerase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342814324|gb|EGU49270.1| poly(A) polymerase [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 455
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 111/219 (50%), Gaps = 17/219 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 65 LLGQQPKDFDIATNATPEQIRQLFKNCRLIGRRFRLAHIMFGRDIIEVATF--------R 116
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
E + + K+ + R+ + +RDFT+N + ++ I+DY GG ED
Sbjct: 117 GHHQEPNKNVSQQSKEGMLLRDNVYGTIDEDAERRDFTVNAMYYNIGDYSIHDYAGGHED 176
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + T ++ED R+LRAIR A +L F +TA ++ ++ + + RL
Sbjct: 177 LEDKLIRLLGDPETRYREDPVRMLRAIRFAVKLDFDIEEDTAAPIEEMATLLQDIPAARL 236
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E ML G + L+ ++ L + L P A + +
Sbjct: 237 YEESLKMLQSGHGLETYHLMREYNLFQQLFPTIAEFFTE 275
>gi|220934061|ref|YP_002512960.1| polynucleotide adenylyltransferase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995371|gb|ACL71973.1| Polynucleotide adenylyltransferase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 465
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 7/209 (3%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFD+ T A ++V ++F C ++G+RF + HV F I+EV++F +
Sbjct: 66 LLGREPKDFDVATDAHPEQVRQLFRNCRLIGRRFRLAHVQFGREIIEVATFRAPHEVLNG 125
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D EF ++ IR ++ +RDFTIN L +D + DY GG+ D++
Sbjct: 126 DDDEEFNGDALVEDGRIIRDNVYGTIEQDAWRRDFTINALYYDIEDFSVVDYAGGMADLK 185
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + F+ED R+LRA+R A +LGFR + ++ + ++ RL
Sbjct: 186 AGVLRLIGDPEVRFREDPVRMLRAVRFAGKLGFRLDIACEQAIPRMAGLLEEVAPARLFD 245
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
E + G + +L + L L P
Sbjct: 246 EAIKLFHSGYGLQTFEMLRRHDLFRFLFP 274
>gi|403059590|ref|YP_006647807.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. carotovorum
PCC21]
gi|402806916|gb|AFR04554.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. carotovorum
PCC21]
Length = 452
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 145/315 (46%), Gaps = 32/315 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFS-------- 52
+L + PKDFDI T+A +V ++F C +VG+RF + H+ F ++EV++F
Sbjct: 55 LLGKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHEQHQE 114
Query: 53 ----TSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
+ + ++ + G E+D R RDF+IN L + + DY G
Sbjct: 115 QQEIKNSSQQAQSGMLLRDNIFGSVEEDAQR------RDFSINSLYYSISDFSVRDYTDG 168
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D+R+ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 169 LNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPA 228
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
R+ E +L G + ++L ++ L + L P+ + Y +G ++ ++ +
Sbjct: 229 ARMFEESLKLLQSGYGYPTYKMLCEYQLFQPLFPLLSRYFTPNGDSTLER---MVAQVLK 285
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRI 288
N D+ L D + + + + ++ PLV LA +G +A +A +
Sbjct: 286 NTDQRLQNDMRVNPAFLFSAMLWY---------PLVEHAQKLAQESGLAYFDAFSLA--M 334
Query: 289 NKSHDESFCELLEPR 303
N DE L P+
Sbjct: 335 NDVLDEQCRSLAIPK 349
>gi|254468684|ref|ZP_05082090.1| poly(A) polymerase [beta proteobacterium KB13]
gi|207087494|gb|EDZ64777.1| poly(A) polymerase [beta proteobacterium KB13]
Length = 397
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 119/251 (47%), Gaps = 18/251 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFS- 59
+LN PKDFDI T+A +V +F I+G+RF I HV + I+EVS+F +
Sbjct: 50 LLNIQPKDFDIATNAHPDQVTAIFKNSRIIGRRFKIVHVRIDRQIIEVSTFRKKPSEVNK 109
Query: 60 -RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
R+ + + G E+D R RDFT+N + +DP ++D G +DI +
Sbjct: 110 LRNGVVQ-DNAFGTIEEDAQR------RDFTMNAIFYDPLNNHLFDPFNGKKDIENRNIN 162
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ ED R+LRAIR A+L F + +K P + + R+ EM
Sbjct: 163 FIGNPEQRINEDPVRLLRAIRFHAKLEFNQGLTLGN-IKKFIPLLDNIPYSRIFDEMMKF 221
Query: 179 LAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDR 238
G A+ S+ +L K+ LL++ P +L H DK S LL+ +N D + D+
Sbjct: 222 FLTGHAKKSIFVLKKYQLLDLFFP----FLSNHSL---DKNS-LLIHGMNNTDSRVKADK 273
Query: 239 PCHSSLWIAIL 249
+ +A++
Sbjct: 274 TVNPGFLMAVI 284
>gi|261250263|ref|ZP_05942839.1| poly(A) polymerase [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260939379|gb|EEX95365.1| poly(A) polymerase [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 453
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 17/220 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F R
Sbjct: 63 LLGQQPKDFDIATNATPEQIRQLFKNCRLIGRRFRLAHIMFGRDIIEVATF--------R 114
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
E + + K+ + R+ + +RDFT+N + ++ I+DY GG ED
Sbjct: 115 GHHQEPNKNVSQQSKEGMLLRDNVYGTIDEDAERRDFTVNAMYYNIGDYSIHDYAGGHED 174
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ ++ + T ++ED R+LRAIR A +L F +TA ++ ++ + + RL
Sbjct: 175 LEDKLIRLLGDPETRYREDPVRMLRAIRFAVKLDFDIEEDTAAPIEEMATLLQDIPAARL 234
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKH 211
E ML G + L+ ++ L + L P A + +
Sbjct: 235 YEESLKMLQSGHGLETYHLMREYNLFQQLFPTIAEFFTEE 274
>gi|167586239|ref|ZP_02378627.1| poly(A) polymerase [Burkholderia ubonensis Bu]
Length = 460
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 24/211 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 48 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDPPPA 107
Query: 54 ---SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPYAK 100
+R RD E +R G +D + W + +RDFTIN + +DP +
Sbjct: 108 EAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPSTQ 163
Query: 101 IIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLS 160
+ DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T + L+
Sbjct: 164 TVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFDIELHTREPINALA 223
Query: 161 PSILKLDRGRLLMEMNYMLAYGSAEASLRLL 191
I + RL EM +L G A A L+ L
Sbjct: 224 DLINNVPAARLFDEMLKLLLSGHALACLKQL 254
>gi|421868697|ref|ZP_16300342.1| Poly(A) polymerase [Burkholderia cenocepacia H111]
gi|358071262|emb|CCE51220.1| Poly(A) polymerase [Burkholderia cenocepacia H111]
Length = 518
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 97 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPE 156
Query: 54 -------SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFD 96
+R RD E +R G +D + W + +RDFTIN + +D
Sbjct: 157 AAAATAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYD 212
Query: 97 PYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFV 156
P + + DY G+ D+R ++ + +T F+ED R+LR +R AA+LGF T +
Sbjct: 213 PSTQTVLDYHDGMADVRARLLRMIGDPATRFREDPVRMLRVVRFAAKLGFEIEPHTREPI 272
Query: 157 KHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 273 HALADLINNVPAARLFDEMLKLLLSGHALACLQRLRK 309
>gi|153997558|ref|ZP_02022658.1| poly(A) polymerase [Yersinia pestis CA88-4125]
gi|149289195|gb|EDM39275.1| poly(A) polymerase [Yersinia pestis CA88-4125]
Length = 502
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 130/279 (46%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 107 LLGRKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 160
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 161 ---HEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRRDFTINSLYYGISDFALRDY 217
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 218 TGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMSISPETAEPIPRLASLLRE 277
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A + +L+
Sbjct: 278 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTEQ---HDSPMERILVQ 334
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 335 VLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 373
>gi|423015812|ref|ZP_17006533.1| poly(A) polymerase [Achromobacter xylosoxidans AXX-A]
gi|338781140|gb|EGP45534.1| poly(A) polymerase [Achromobacter xylosoxidans AXX-A]
Length = 458
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 3/207 (1%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T+A +++ +F + I+G+RF + HV F I+E S+F S D + +
Sbjct: 70 PKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPA---SEDQETD 126
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
I D + +RDFT+N L +DP+ + + D+ G+ D++K +++ + +
Sbjct: 127 AHGRILRDNVFGTHEEDAARRDFTMNALYYDPHNEEVIDFHNGVADLKKRQIRIIGDPAK 186
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAE 185
++ED R+LRA+R AA+L T ++ ++ I + RL EM +L G A
Sbjct: 187 RYREDPVRMLRAVRFAAKLNGTIDPATRQPIRTMADLIENVPASRLFDEMLKLLTCGHAM 246
Query: 186 ASLRLLWKFGLLEVLLPIQAAYLVKHG 212
LR L GL LLP+ L + G
Sbjct: 247 DCLRQLRADGLHNGLLPLLDVVLEQPG 273
>gi|402567514|ref|YP_006616859.1| poly(A) polymerase [Burkholderia cepacia GG4]
gi|402248711|gb|AFQ49165.1| poly(A) polymerase [Burkholderia cepacia GG4]
Length = 511
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 96 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPE 155
Query: 54 -----SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 156 AAAAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 211
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T +
Sbjct: 212 TQTVLDYHDGMADMRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIEPHTREPINA 271
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 272 LADLINNVPAARLFDEMLKLLLSGHALACLQQLRK 306
>gi|433658582|ref|YP_007275961.1| Poly(A) polymerase [Vibrio parahaemolyticus BB22OP]
gi|432509270|gb|AGB10787.1| Poly(A) polymerase [Vibrio parahaemolyticus BB22OP]
Length = 455
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 17/269 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 65 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQKN 124
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ K + G ++D R RDFTIN + ++ I+DY GIED+
Sbjct: 125 KNISQQSKEGMLLRDNVYGTIDEDAER------RDFTINSMYYNIADYSIHDYARGIEDL 178
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
++ + T ++ED R+LRA+R A +L F +TA ++ ++P + ++ RL
Sbjct: 179 EDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEEMAPLLREIPSARLF 238
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL---SLFSN 229
E +L G + LL ++ L + L P + + + ++ +L+L +
Sbjct: 239 EESLKLLQSGHGLETYHLLREYNLFQQLFPAISEHFTEDYSSHTEQMLDLVLDSTDMRIE 298
Query: 230 LDKLLAPDRPCHSSLWIAILAFHKALSDQ 258
K + P + LW + A L DQ
Sbjct: 299 DGKRINPAFMFAAMLWYPLCALADKLMDQ 327
>gi|416936956|ref|ZP_11934122.1| poly(A) polymerase [Burkholderia sp. TJI49]
gi|325524972|gb|EGD02896.1| poly(A) polymerase [Burkholderia sp. TJI49]
Length = 511
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST------- 53
+L PKDFD+ T A EV R+F + ++G+RF I HV F ++EVS+F
Sbjct: 96 LLGIAPKDFDVATDATPTEVQRLFRRARLIGRRFQIVHVQFGQELIEVSTFRALVDAPPE 155
Query: 54 -----SGRRFSRDFKYEFERPI------GCDEKDFIRW----RNCLQRDFTINGLMFDPY 98
+R RD E +R G +D + W + +RDFTIN + +DP
Sbjct: 156 AAAAEPPKRLKRD---ELDRRTHAVDASGRVLRDNV-WGEQHEDAARRDFTINAMYYDPS 211
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158
+ + DY G+ D+R ++ + +T ++ED R+LR +R AA+LGF T +
Sbjct: 212 TQTVLDYHDGMADVRARLLRMIGDPATRYREDPVRMLRVVRFAAKLGFEIEPHTREPIHA 271
Query: 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK 193
L+ I + RL EM +L G A A L+ L K
Sbjct: 272 LADLINNVPAARLFDEMLKLLLSGHALACLQRLRK 306
>gi|120597644|ref|YP_962218.1| poly(A) polymerase [Shewanella sp. W3-18-1]
gi|146294217|ref|YP_001184641.1| poly(A) polymerase [Shewanella putrefaciens CN-32]
gi|120557737|gb|ABM23664.1| poly(A) polymerase [Shewanella sp. W3-18-1]
gi|145565907|gb|ABP76842.1| poly(A) polymerase [Shewanella putrefaciens CN-32]
Length = 494
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 147/302 (48%), Gaps = 22/302 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++F G
Sbjct: 103 LLGLEPKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFR--GHHGES 160
Query: 61 DFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ K G +D + + +RDFT+N L +D I Y GG+ D++ +
Sbjct: 161 NEKISKANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTL 220
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L TA +K L+P + + R+ E+
Sbjct: 221 RLIGDPETRYREDPVRMLRAVRFATKLSMNIEDVTAKPIKQLAPLLTDIPAARMYEEVLK 280
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G A A+ ++ ++ L L P Q L+K + ++ ++ + D + D
Sbjct: 281 LFFAGKALANFEMMQEYKLFAPLFP-QVDALLKED--PKGPAMKMVQAIMKSTDLRVNED 337
Query: 238 RPCHSSLWIAILAFHKALSDQPRDPLVVAVFS-LAVYNG-----GDMLE----AVKIARR 287
+P S + A + ++ L + D +AV S L +Y+ GD++E + I RR
Sbjct: 338 KPVTPSFFYAAMLWY-PLRQRAED---IAVESGLTLYDAFFAAMGDVMEQQCQTISIPRR 393
Query: 288 IN 289
+
Sbjct: 394 FS 395
>gi|386314936|ref|YP_006011101.1| poly(A) polymerase [Shewanella putrefaciens 200]
gi|319427561|gb|ADV55635.1| poly(A) polymerase [Shewanella putrefaciens 200]
Length = 494
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 147/302 (48%), Gaps = 22/302 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD++T+A +E+ ++F C +VG+RF + H+ F ++EV++F G
Sbjct: 103 LLGLEPKDFDVVTNATPEEIKKLFRNCRVVGRRFRLAHIVFGRDVIEVATFR--GHHGES 160
Query: 61 DFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
+ K G +D + + +RDFT+N L +D I Y GG+ D++ +
Sbjct: 161 NEKISKANAEGRLLRDNVYGEIDEDAERRDFTVNALYYDISDYSIRSYGGGMADLKAGTL 220
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A +L TA +K L+P + + R+ E+
Sbjct: 221 RLIGDPETRYREDPVRMLRAVRFATKLSMNIEDVTAKPIKQLAPLLTDIPAARMYEEVLK 280
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G A A+ ++ ++ L L P Q L+K + ++ ++ + D + D
Sbjct: 281 LFFAGKALANFEMMQEYKLFAPLFP-QVDALLKED--PKGPAMKMVQAIMKSTDLRVNED 337
Query: 238 RPCHSSLWIAILAFHKALSDQPRDPLVVAVFS-LAVYNG-----GDMLE----AVKIARR 287
+P S + A + ++ L + D +AV S L +Y+ GD++E + I RR
Sbjct: 338 KPVTPSFFYAAMLWY-PLRQRAED---IAVESGLTLYDAFFAAMGDVMEQQCQTISIPRR 393
Query: 288 IN 289
+
Sbjct: 394 FS 395
>gi|417318997|ref|ZP_12105555.1| poly(A) polymerase [Vibrio parahaemolyticus 10329]
gi|328474187|gb|EGF44992.1| poly(A) polymerase [Vibrio parahaemolyticus 10329]
Length = 455
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 17/269 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 65 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQKN 124
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ K + G ++D R RDFTIN + ++ I+DY GIED+
Sbjct: 125 KNISQQSKEGMLLRDNVYGTIDEDAER------RDFTINSMYYNIADYSIHDYARGIEDL 178
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
++ + T ++ED R+LRA+R A +L F +TA ++ ++P + ++ RL
Sbjct: 179 EDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEEMAPLLREIPSARLF 238
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL---SLFSN 229
E +L G + LL ++ L + L P + + + ++ +L+L +
Sbjct: 239 EESLKLLQSGHGLETYHLLREYNLFQQLFPAISEHFTEDYSSHTEQMLDLVLDSTDMRIE 298
Query: 230 LDKLLAPDRPCHSSLWIAILAFHKALSDQ 258
K + P + LW + A L DQ
Sbjct: 299 DGKRINPAFMFAAMLWYPLCALADKLMDQ 327
>gi|227112948|ref|ZP_03826604.1| poly(A) polymerase I [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 452
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 145/315 (46%), Gaps = 32/315 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFS-------- 52
+L + PKDFDI T+A +V ++F C +VG+RF + H+ F ++EV++F
Sbjct: 55 LLGKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHEQHQE 114
Query: 53 ----TSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
+ + ++ + G E+D R RDF+IN L + + DY G
Sbjct: 115 QQEIKNSSQQAQSGMLLRDNIFGSVEEDAQR------RDFSINSLYYSISDFSVRDYTDG 168
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D+R+ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 169 LNDLRQGVIRMIGDPETRYREDPVRMLRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPA 228
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
R+ E +L G + ++L ++ L + L P+ + Y +G ++ ++ +
Sbjct: 229 ARMFEESLKLLQSGYGYPTYKMLCEYQLFQPLFPLLSRYFTPNGDSTLER---MVAQVLK 285
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRI 288
N D+ L D + + + + ++ PLV LA +G +A +A +
Sbjct: 286 NTDQRLQNDMRVNPAFLFSAMLWY---------PLVEHAQKLAQESGLAYFDAFSLA--M 334
Query: 289 NKSHDESFCELLEPR 303
N DE L P+
Sbjct: 335 NDVLDEQCRSLAIPK 349
>gi|254493329|ref|ZP_05106500.1| poly(A) polymerase [Neisseria gonorrhoeae 1291]
gi|268594467|ref|ZP_06128634.1| poly(A) polymerase [Neisseria gonorrhoeae 35/02]
gi|268598595|ref|ZP_06132762.1| poly(A) polymerase [Neisseria gonorrhoeae MS11]
gi|268683962|ref|ZP_06150824.1| poly(A) polymerase [Neisseria gonorrhoeae SK-92-679]
gi|385335340|ref|YP_005889287.1| hypothetical protein NGTW08_0452 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|226512369|gb|EEH61714.1| poly(A) polymerase [Neisseria gonorrhoeae 1291]
gi|268547856|gb|EEZ43274.1| poly(A) polymerase [Neisseria gonorrhoeae 35/02]
gi|268582726|gb|EEZ47402.1| poly(A) polymerase [Neisseria gonorrhoeae MS11]
gi|268624246|gb|EEZ56646.1| poly(A) polymerase [Neisseria gonorrhoeae SK-92-679]
gi|317163883|gb|ADV07424.1| hypothetical protein NGTW08_0452 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 452
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 125/256 (48%), Gaps = 31/256 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + ++ P+ A V G K + L L N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDI-HPLLNALRVSDGI--AGKMTALAL---KNTDERLR 289
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 290 ADKSVSVGFVLAALMW 305
>gi|227327661|ref|ZP_03831685.1| poly(A) polymerase I [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 452
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 145/315 (46%), Gaps = 32/315 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFS-------- 52
+L + PKDFDI T+A +V ++F C +VG+RF + H+ F ++EV++F
Sbjct: 55 LLGKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFRGHHEQHQE 114
Query: 53 ----TSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
+ + ++ + G E+D R RDF+IN L + + DY G
Sbjct: 115 QQEVKNSSQQAQSGMLLRDNIFGSVEEDAQR------RDFSINSLYYSISDFSVRDYTDG 168
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D+R+ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 169 LNDLRQGIIRMIGDPETRYREDPVRMLRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPA 228
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
R+ E +L G + ++L ++ L + L P+ + Y +G ++ ++ +
Sbjct: 229 ARMFEESLKLLQSGYGYPTYKMLCEYQLFQPLFPLLSRYFTPNGDSTLER---MVAQVLK 285
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRI 288
N D+ L D + + + + ++ PLV LA +G +A +A +
Sbjct: 286 NTDQRLQNDMRVNPAFLFSAMLWY---------PLVEHAQKLAQESGLAYFDAFSLA--M 334
Query: 289 NKSHDESFCELLEPR 303
N DE L P+
Sbjct: 335 NDVLDEQCRSLAIPK 349
>gi|59800858|ref|YP_207570.1| hypothetical protein NGO0415 [Neisseria gonorrhoeae FA 1090]
gi|194098159|ref|YP_002001207.1| PcnB [Neisseria gonorrhoeae NCCP11945]
gi|240016171|ref|ZP_04722711.1| PcnB [Neisseria gonorrhoeae FA6140]
gi|59717753|gb|AAW89158.1| putative tRNA nucleotidyltransferase/poly(A) polymerase [Neisseria
gonorrhoeae FA 1090]
gi|193933449|gb|ACF29273.1| PcnB [Neisseria gonorrhoeae NCCP11945]
Length = 452
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 125/256 (48%), Gaps = 31/256 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + ++ P+ A V G K + L L N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDI-HPLLNALRVSDGI--AGKMTALAL---KNTDERLR 289
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 290 ADKSVSVGFVLAALMW 305
>gi|51588364|emb|CAH19972.1| poly(A) polymerase I [Yersinia pseudotuberculosis IP 32953]
Length = 437
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/267 (26%), Positives = 127/267 (47%), Gaps = 27/267 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 45 LLGRKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 98
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 99 ---HEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRRDFTINSLYYGISDFALRDY 155
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 156 TGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMSISPETAEPIPRLASLLRE 215
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A + + +L+
Sbjct: 216 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTE---QHDSPMERILVQ 272
Query: 226 LFSNLDKLLAPDRPCHSSLWIAILAFH 252
+ N D L D+ + + A + ++
Sbjct: 273 VLKNTDHRLHNDQRVNPAFLFAAMLWY 299
>gi|28899278|ref|NP_798883.1| polyA polymerase [Vibrio parahaemolyticus RIMD 2210633]
gi|308094714|ref|ZP_05891383.2| polyA polymerase [Vibrio parahaemolyticus AN-5034]
gi|308125331|ref|ZP_05774567.2| polyA polymerase [Vibrio parahaemolyticus K5030]
gi|28807502|dbj|BAC60767.1| polyA polymerase [Vibrio parahaemolyticus RIMD 2210633]
gi|308089641|gb|EFO39336.1| polyA polymerase [Vibrio parahaemolyticus AN-5034]
gi|308111753|gb|EFO49293.1| polyA polymerase [Vibrio parahaemolyticus K5030]
Length = 453
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 130/269 (48%), Gaps = 17/269 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 63 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQKN 122
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ K + G ++D R RDFTIN + ++ I+DY GIED+
Sbjct: 123 KNISQQSKEGMLLRDNVYGTIDEDAER------RDFTINSMYYNIADYSIHDYARGIEDL 176
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
++ + T ++ED R+LRA+R A +L F +TA ++ ++P + ++ RL
Sbjct: 177 EDRLIRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEEMAPLLREIPSARLF 236
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLL---SLFSN 229
E +L G + LL ++ L + L P + + + ++ +L+L +
Sbjct: 237 EESLKLLQSGHGLETYHLLREYNLFQQLFPAISEHFTEDYSSHTEQMLDLVLDSTDMRIE 296
Query: 230 LDKLLAPDRPCHSSLWIAILAFHKALSDQ 258
K + P + LW + A L DQ
Sbjct: 297 DGKRINPAFMFAAMLWYPLCALADKLMDQ 325
>gi|421863082|ref|ZP_16294783.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379411|emb|CBX21978.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 453
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV +EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAETIEVTTFRGGAKVHQNARGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ ++ED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYREDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|268596463|ref|ZP_06130630.1| poly(A) polymerase [Neisseria gonorrhoeae FA19]
gi|268681735|ref|ZP_06148597.1| poly(A) polymerase [Neisseria gonorrhoeae PID332]
gi|268686207|ref|ZP_06153069.1| poly(A) polymerase [Neisseria gonorrhoeae SK-93-1035]
gi|268550251|gb|EEZ45270.1| poly(A) polymerase [Neisseria gonorrhoeae FA19]
gi|268622019|gb|EEZ54419.1| poly(A) polymerase [Neisseria gonorrhoeae PID332]
gi|268626491|gb|EEZ58891.1| poly(A) polymerase [Neisseria gonorrhoeae SK-93-1035]
Length = 452
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 125/256 (48%), Gaps = 31/256 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + ++ P+ A V G K + L L N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDI-HPLLNALRVSDGI--AGKMTALAL---KNTDERLR 289
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 290 ADKSVSVGFVLAALMW 305
>gi|422322716|ref|ZP_16403756.1| Poly(A) polymerase, partial [Achromobacter xylosoxidans C54]
gi|317402334|gb|EFV82909.1| Poly(A) polymerase [Achromobacter xylosoxidans C54]
Length = 424
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 107/207 (51%), Gaps = 3/207 (1%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T+A +++ +F + I+G+RF + HV F I+E S+F S D + +
Sbjct: 70 PKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPA---SEDQETD 126
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
I D + +RDFT+N L +DP+ + + D+ G+ D++K +++ + +
Sbjct: 127 AHGRILRDNVFGTHEEDAARRDFTMNALYYDPHNEEVIDFHNGVADLKKRQIRMIGDPAK 186
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAE 185
++ED R+LRA+R AA+L T ++ ++ I + RL EM +L G A
Sbjct: 187 RYREDPVRMLRAVRFAAKLNGTIDPATRQPIRTMADLIENVPASRLFDEMLKLLTCGHAM 246
Query: 186 ASLRLLWKFGLLEVLLPIQAAYLVKHG 212
LR L GL LLP+ L + G
Sbjct: 247 DCLRQLRADGLHNGLLPLLDVVLEQPG 273
>gi|240013733|ref|ZP_04720646.1| PcnB [Neisseria gonorrhoeae DGI18]
gi|240120803|ref|ZP_04733765.1| PcnB [Neisseria gonorrhoeae PID24-1]
gi|268600948|ref|ZP_06135115.1| poly(A) polymerase [Neisseria gonorrhoeae PID18]
gi|268585079|gb|EEZ49755.1| poly(A) polymerase [Neisseria gonorrhoeae PID18]
Length = 452
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 125/256 (48%), Gaps = 31/256 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + ++ P+ A V G K + L L N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDI-HPLLNALRVSDGI--AGKMTALAL---KNTDERLR 289
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 290 ADKSVSVGFVLAALMW 305
>gi|441503470|ref|ZP_20985476.1| Poly(A) polymerase [Photobacterium sp. AK15]
gi|441428968|gb|ELR66424.1| Poly(A) polymerase [Photobacterium sp. AK15]
Length = 446
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/312 (23%), Positives = 144/312 (46%), Gaps = 25/312 (8%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L++ PKDFDI T+A +E+ ++F C ++G+RF + H+ F ++EV++F G
Sbjct: 45 LLDKQPKDFDIATNATPEEIKKLFRNCRLIGRRFRLAHILFGRDVIEVATFR--GHHADA 102
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------QRDFTINGLMFDPYAKIIYDYIGGIED 111
++ I ++ + R+ + +RDFTIN L + + DY G+ D
Sbjct: 103 KPNIRNKQNISAQNQEGMLLRDNVYGTIDEDAERRDFTINALYYSIKDFTVSDYANGVHD 162
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ V+ + T ++ED R+LRA+R AA+L +TA + LS + + RL
Sbjct: 163 LENRIVRLMGDPETRYREDPVRMLRAVRFAAKLDMDIEEKTAAPIHQLSTLLQDIPAARL 222
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E +L G+ + +LL + L + L P+ + + + + + ++ + + D
Sbjct: 223 FEESLKLLQSGNGLETYKLLRHYNLFQQLFPLLSEHFTEE---QNSQTEQMIEHILAATD 279
Query: 232 KLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKS 291
K + D+ + + A + ++ P+V ++ +G +A +A N
Sbjct: 280 KRIVEDKRVNPAFMYAAMLWY---------PMVTRAEEISFTSGLSYYDAFMVAS--NDI 328
Query: 292 HDESFCELLEPR 303
DE + PR
Sbjct: 329 LDEQVKTIAIPR 340
>gi|162420585|ref|YP_001605569.1| poly(A) polymerase I [Yersinia pestis Angola]
gi|165925807|ref|ZP_02221639.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|166010184|ref|ZP_02231082.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166214122|ref|ZP_02240157.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. B42003004]
gi|167398734|ref|ZP_02304258.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167420762|ref|ZP_02312515.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167423197|ref|ZP_02314950.1| poly(A) polymerase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229839037|ref|ZP_04459196.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229896516|ref|ZP_04511684.1| Poly(A) polymerase [Yersinia pestis Pestoides A]
gi|229899602|ref|ZP_04514743.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. India
195]
gi|229901064|ref|ZP_04516187.1| Poly(A) polymerase [Yersinia pestis Nepal516]
gi|294505105|ref|YP_003569167.1| poly(A) polymerase [Yersinia pestis Z176003]
gi|384416096|ref|YP_005625458.1| Poly(A) polymerase [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|420548520|ref|ZP_15046320.1| poly(A) polymerase [Yersinia pestis PY-01]
gi|420553864|ref|ZP_15051089.1| poly(A) polymerase [Yersinia pestis PY-02]
gi|420559472|ref|ZP_15055962.1| poly(A) polymerase [Yersinia pestis PY-03]
gi|420564849|ref|ZP_15060794.1| poly(A) polymerase [Yersinia pestis PY-04]
gi|420569901|ref|ZP_15065381.1| poly(A) polymerase [Yersinia pestis PY-05]
gi|420575564|ref|ZP_15070505.1| poly(A) polymerase [Yersinia pestis PY-06]
gi|420580872|ref|ZP_15075333.1| poly(A) polymerase [Yersinia pestis PY-07]
gi|420586234|ref|ZP_15080186.1| poly(A) polymerase [Yersinia pestis PY-08]
gi|420591343|ref|ZP_15084782.1| poly(A) polymerase [Yersinia pestis PY-09]
gi|420596743|ref|ZP_15089638.1| poly(A) polymerase [Yersinia pestis PY-10]
gi|420602408|ref|ZP_15094671.1| poly(A) polymerase [Yersinia pestis PY-11]
gi|420607813|ref|ZP_15099569.1| poly(A) polymerase [Yersinia pestis PY-12]
gi|420613220|ref|ZP_15104415.1| poly(A) polymerase [Yersinia pestis PY-13]
gi|420618583|ref|ZP_15109088.1| poly(A) polymerase family protein [Yersinia pestis PY-14]
gi|420623903|ref|ZP_15113885.1| poly(A) polymerase [Yersinia pestis PY-15]
gi|420628898|ref|ZP_15118414.1| poly(A) polymerase [Yersinia pestis PY-16]
gi|420634091|ref|ZP_15123069.1| poly(A) polymerase [Yersinia pestis PY-19]
gi|420639308|ref|ZP_15127764.1| poly(A) polymerase [Yersinia pestis PY-25]
gi|420644769|ref|ZP_15132754.1| poly(A) polymerase [Yersinia pestis PY-29]
gi|420650063|ref|ZP_15137530.1| poly(A) polymerase [Yersinia pestis PY-32]
gi|420655700|ref|ZP_15142598.1| poly(A) polymerase [Yersinia pestis PY-34]
gi|420661128|ref|ZP_15147449.1| poly(A) polymerase [Yersinia pestis PY-36]
gi|420666491|ref|ZP_15152282.1| poly(A) polymerase [Yersinia pestis PY-42]
gi|420671344|ref|ZP_15156706.1| poly(A) polymerase family protein [Yersinia pestis PY-45]
gi|420676694|ref|ZP_15161571.1| poly(A) polymerase [Yersinia pestis PY-46]
gi|420682240|ref|ZP_15166577.1| poly(A) polymerase [Yersinia pestis PY-47]
gi|420687654|ref|ZP_15171392.1| poly(A) polymerase [Yersinia pestis PY-48]
gi|420692902|ref|ZP_15175994.1| poly(A) polymerase [Yersinia pestis PY-52]
gi|420698654|ref|ZP_15181059.1| poly(A) polymerase [Yersinia pestis PY-53]
gi|420704500|ref|ZP_15185691.1| poly(A) polymerase family protein [Yersinia pestis PY-54]
gi|420709839|ref|ZP_15190450.1| poly(A) polymerase [Yersinia pestis PY-55]
gi|420715293|ref|ZP_15195294.1| poly(A) polymerase [Yersinia pestis PY-56]
gi|420720813|ref|ZP_15200021.1| poly(A) polymerase [Yersinia pestis PY-58]
gi|420726277|ref|ZP_15204836.1| poly(A) polymerase [Yersinia pestis PY-59]
gi|420731799|ref|ZP_15209798.1| poly(A) polymerase [Yersinia pestis PY-60]
gi|420732873|ref|ZP_15210766.1| poly(A) polymerase [Yersinia pestis PY-61]
gi|420742265|ref|ZP_15219228.1| poly(A) polymerase [Yersinia pestis PY-63]
gi|420748104|ref|ZP_15224157.1| poly(A) polymerase [Yersinia pestis PY-64]
gi|420749458|ref|ZP_15225319.1| poly(A) polymerase [Yersinia pestis PY-65]
gi|420759326|ref|ZP_15233658.1| poly(A) polymerase [Yersinia pestis PY-66]
gi|420764571|ref|ZP_15238285.1| poly(A) polymerase [Yersinia pestis PY-71]
gi|420769800|ref|ZP_15242974.1| poly(A) polymerase [Yersinia pestis PY-72]
gi|420774770|ref|ZP_15247479.1| poly(A) polymerase [Yersinia pestis PY-76]
gi|420780394|ref|ZP_15252425.1| poly(A) polymerase [Yersinia pestis PY-88]
gi|420785990|ref|ZP_15257314.1| poly(A) polymerase [Yersinia pestis PY-89]
gi|420791047|ref|ZP_15261858.1| poly(A) polymerase family protein [Yersinia pestis PY-90]
gi|420796610|ref|ZP_15266864.1| poly(A) polymerase [Yersinia pestis PY-91]
gi|420801714|ref|ZP_15271448.1| poly(A) polymerase [Yersinia pestis PY-92]
gi|420807061|ref|ZP_15276294.1| poly(A) polymerase [Yersinia pestis PY-93]
gi|420812432|ref|ZP_15281111.1| poly(A) polymerase family protein [Yersinia pestis PY-94]
gi|420817930|ref|ZP_15286086.1| poly(A) polymerase [Yersinia pestis PY-95]
gi|420823249|ref|ZP_15290854.1| poly(A) polymerase [Yersinia pestis PY-96]
gi|420828329|ref|ZP_15295423.1| poly(A) polymerase [Yersinia pestis PY-98]
gi|420833934|ref|ZP_15300485.1| poly(A) polymerase [Yersinia pestis PY-99]
gi|420838875|ref|ZP_15304952.1| poly(A) polymerase [Yersinia pestis PY-100]
gi|420844075|ref|ZP_15309668.1| poly(A) polymerase [Yersinia pestis PY-101]
gi|420849736|ref|ZP_15314751.1| poly(A) polymerase [Yersinia pestis PY-102]
gi|420855418|ref|ZP_15319551.1| poly(A) polymerase [Yersinia pestis PY-103]
gi|420860516|ref|ZP_15324046.1| poly(A) polymerase [Yersinia pestis PY-113]
gi|115349027|emb|CAL21988.1| poly(A) polymerase [Yersinia pestis CO92]
gi|162353400|gb|ABX87348.1| poly(A) polymerase [Yersinia pestis Angola]
gi|165922419|gb|EDR39596.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165991091|gb|EDR43392.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. E1979001]
gi|166204753|gb|EDR49233.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. B42003004]
gi|166961568|gb|EDR57589.1| poly(A) polymerase [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167051238|gb|EDR62646.1| poly(A) polymerase [Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167057367|gb|EDR67113.1| poly(A) polymerase [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|229681789|gb|EEO77882.1| Poly(A) polymerase [Yersinia pestis Nepal516]
gi|229687094|gb|EEO79169.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. India
195]
gi|229695403|gb|EEO85450.1| Poly(A) polymerase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229700590|gb|EEO88621.1| Poly(A) polymerase [Yersinia pestis Pestoides A]
gi|294355564|gb|ADE65905.1| poly(A) polymerase [Yersinia pestis Z176003]
gi|320016600|gb|ADW00172.1| Poly(A) polymerase [Yersinia pestis biovar Medievalis str. Harbin
35]
gi|391422579|gb|EIQ85145.1| poly(A) polymerase [Yersinia pestis PY-01]
gi|391422892|gb|EIQ85430.1| poly(A) polymerase [Yersinia pestis PY-02]
gi|391422919|gb|EIQ85452.1| poly(A) polymerase [Yersinia pestis PY-03]
gi|391437770|gb|EIQ98595.1| poly(A) polymerase [Yersinia pestis PY-04]
gi|391438748|gb|EIQ99465.1| poly(A) polymerase [Yersinia pestis PY-05]
gi|391442631|gb|EIR03013.1| poly(A) polymerase [Yersinia pestis PY-06]
gi|391454667|gb|EIR13853.1| poly(A) polymerase [Yersinia pestis PY-07]
gi|391455275|gb|EIR14405.1| poly(A) polymerase [Yersinia pestis PY-08]
gi|391457302|gb|EIR16252.1| poly(A) polymerase [Yersinia pestis PY-09]
gi|391470442|gb|EIR28110.1| poly(A) polymerase [Yersinia pestis PY-10]
gi|391471577|gb|EIR29123.1| poly(A) polymerase [Yersinia pestis PY-11]
gi|391472821|gb|EIR30247.1| poly(A) polymerase [Yersinia pestis PY-12]
gi|391486371|gb|EIR42410.1| poly(A) polymerase [Yersinia pestis PY-13]
gi|391488049|gb|EIR43926.1| poly(A) polymerase [Yersinia pestis PY-15]
gi|391488117|gb|EIR43993.1| poly(A) polymerase family protein [Yersinia pestis PY-14]
gi|391502644|gb|EIR56920.1| poly(A) polymerase [Yersinia pestis PY-16]
gi|391502699|gb|EIR56968.1| poly(A) polymerase [Yersinia pestis PY-19]
gi|391507654|gb|EIR61464.1| poly(A) polymerase [Yersinia pestis PY-25]
gi|391518490|gb|EIR71201.1| poly(A) polymerase [Yersinia pestis PY-29]
gi|391519836|gb|EIR72441.1| poly(A) polymerase [Yersinia pestis PY-34]
gi|391520751|gb|EIR73279.1| poly(A) polymerase [Yersinia pestis PY-32]
gi|391533058|gb|EIR84380.1| poly(A) polymerase [Yersinia pestis PY-36]
gi|391535866|gb|EIR86906.1| poly(A) polymerase [Yersinia pestis PY-42]
gi|391538335|gb|EIR89149.1| poly(A) polymerase family protein [Yersinia pestis PY-45]
gi|391551293|gb|EIS00817.1| poly(A) polymerase [Yersinia pestis PY-46]
gi|391551630|gb|EIS01124.1| poly(A) polymerase [Yersinia pestis PY-47]
gi|391551902|gb|EIS01370.1| poly(A) polymerase [Yersinia pestis PY-48]
gi|391566253|gb|EIS14267.1| poly(A) polymerase [Yersinia pestis PY-52]
gi|391567492|gb|EIS15350.1| poly(A) polymerase [Yersinia pestis PY-53]
gi|391571654|gb|EIS18978.1| poly(A) polymerase family protein [Yersinia pestis PY-54]
gi|391580776|gb|EIS26736.1| poly(A) polymerase [Yersinia pestis PY-55]
gi|391582783|gb|EIS28510.1| poly(A) polymerase [Yersinia pestis PY-56]
gi|391593310|gb|EIS37629.1| poly(A) polymerase [Yersinia pestis PY-58]
gi|391596556|gb|EIS40481.1| poly(A) polymerase [Yersinia pestis PY-60]
gi|391597388|gb|EIS41215.1| poly(A) polymerase [Yersinia pestis PY-59]
gi|391611475|gb|EIS53647.1| poly(A) polymerase [Yersinia pestis PY-63]
gi|391613683|gb|EIS55627.1| poly(A) polymerase [Yersinia pestis PY-64]
gi|391621377|gb|EIS62423.1| poly(A) polymerase [Yersinia pestis PY-61]
gi|391628146|gb|EIS68262.1| poly(A) polymerase [Yersinia pestis PY-66]
gi|391632571|gb|EIS72079.1| poly(A) polymerase [Yersinia pestis PY-65]
gi|391634621|gb|EIS73878.1| poly(A) polymerase [Yersinia pestis PY-71]
gi|391636497|gb|EIS75520.1| poly(A) polymerase [Yersinia pestis PY-72]
gi|391646779|gb|EIS84485.1| poly(A) polymerase [Yersinia pestis PY-76]
gi|391650096|gb|EIS87412.1| poly(A) polymerase [Yersinia pestis PY-88]
gi|391654541|gb|EIS91368.1| poly(A) polymerase [Yersinia pestis PY-89]
gi|391659781|gb|EIS96023.1| poly(A) polymerase family protein [Yersinia pestis PY-90]
gi|391667337|gb|EIT02682.1| poly(A) polymerase [Yersinia pestis PY-91]
gi|391676636|gb|EIT11023.1| poly(A) polymerase [Yersinia pestis PY-93]
gi|391677197|gb|EIT11525.1| poly(A) polymerase [Yersinia pestis PY-92]
gi|391677678|gb|EIT11963.1| poly(A) polymerase family protein [Yersinia pestis PY-94]
gi|391690717|gb|EIT23715.1| poly(A) polymerase [Yersinia pestis PY-95]
gi|391693435|gb|EIT26184.1| poly(A) polymerase [Yersinia pestis PY-96]
gi|391695084|gb|EIT27689.1| poly(A) polymerase [Yersinia pestis PY-98]
gi|391707887|gb|EIT39191.1| poly(A) polymerase [Yersinia pestis PY-99]
gi|391710870|gb|EIT41885.1| poly(A) polymerase [Yersinia pestis PY-100]
gi|391711552|gb|EIT42506.1| poly(A) polymerase [Yersinia pestis PY-101]
gi|391723736|gb|EIT53382.1| poly(A) polymerase [Yersinia pestis PY-102]
gi|391724286|gb|EIT53877.1| poly(A) polymerase [Yersinia pestis PY-103]
gi|391727237|gb|EIT56484.1| poly(A) polymerase [Yersinia pestis PY-113]
Length = 440
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 131/279 (46%), Gaps = 33/279 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 45 LLGRKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 98
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 99 ---HEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRRDFTINSLYYGISDFALRDY 155
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 156 TGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMSISPETAEPIPRLASLLRE 215
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLS 225
+ RL E +L G + L ++ L + L P+ A + + +L+
Sbjct: 216 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARNFTE---QHDSPMERILVQ 272
Query: 226 LFSNLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
+ N D L D+ + + LW ++ + L+ +
Sbjct: 273 VLKNTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 311
>gi|296315340|ref|ZP_06865281.1| poly(A) polymerase [Neisseria polysaccharea ATCC 43768]
gi|296837718|gb|EFH21656.1| poly(A) polymerase [Neisseria polysaccharea ATCC 43768]
Length = 474
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 79/256 (30%), Positives = 122/256 (47%), Gaps = 30/256 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + IVG+RF I HV +EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIVGRRFQIVHVMNGVETIEVTTFRGGAKVHQNARGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ ++ED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGDAAERYREDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + + + P+ A V G + + N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDMPDDIHPLLNALRVSDGI-----AGKMTVLALKNTDERLR 290
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 291 ADKSVSVGFVLAALMW 306
>gi|291044239|ref|ZP_06569948.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Neisseria gonorrhoeae
DGI2]
gi|291011133|gb|EFE03129.1| 4-hydroxythreonine-4-phosphate dehydrogenase [Neisseria gonorrhoeae
DGI2]
Length = 477
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 125/256 (48%), Gaps = 31/256 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S ETA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSEETA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + ++ P+ A V G K + L L N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDI-HPLLNALRVSDGI--AGKMTALAL---KNTDERLR 289
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 290 ADKSVSVGFVLAALMW 305
>gi|421485424|ref|ZP_15932983.1| poly(A) polymerase [Achromobacter piechaudii HLE]
gi|400196343|gb|EJO29320.1| poly(A) polymerase [Achromobacter piechaudii HLE]
Length = 462
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 9/210 (4%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---STSGRRFSRDF 62
PKDFD+ T+A +++ +F + I+G+RF + HV F I+E S+F ++ +
Sbjct: 70 PKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASEDQETDEHG 129
Query: 63 KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
+ + G E+D R RDFT+N L +DP+ + + DY G+ D++K +V+ +
Sbjct: 130 RILRDNVFGSQEEDAKR------RDFTMNALYYDPHNEEVIDYHNGVADLKKRQVRIIGD 183
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
++ED R+LRA+R AA+L T + ++ I + RL EM +L G
Sbjct: 184 PVKRYREDPVRMLRAVRFAAKLNGTIDPATRQPISTMAELIENVPASRLFDEMLKLLTCG 243
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
A LR L GL LLP+ L + G
Sbjct: 244 HAMDCLRQLRADGLHNGLLPLLDVVLEQPG 273
>gi|424047643|ref|ZP_17785202.1| poly(A) polymerase [Vibrio cholerae HENC-03]
gi|408883765|gb|EKM22536.1| poly(A) polymerase [Vibrio cholerae HENC-03]
Length = 413
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 111/218 (50%), Gaps = 14/218 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 23 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQKN 82
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ K + G ++D R RDFTIN + ++ I+DY GIED+
Sbjct: 83 KNVSQQSKEGMLLRDNVYGTIDEDAER------RDFTINSMYYNIADYSIHDYARGIEDL 136
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
V+ + T ++ED R+LRA+R A +L F +TA ++ ++ + + RL
Sbjct: 137 EDRLVRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEEMATLLRDIPSARLF 196
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E ML G + LL ++ L + L P+ A + +
Sbjct: 197 EESLKMLQSGHGLETYHLLREYNLFQQLFPVIAEHFTE 234
>gi|359795769|ref|ZP_09298382.1| poly(A) polymerase [Achromobacter arsenitoxydans SY8]
gi|359366088|gb|EHK67772.1| poly(A) polymerase [Achromobacter arsenitoxydans SY8]
Length = 456
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 9/210 (4%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---STSGRRFSRDF 62
PKDFD+ T+A +++ +F + I+G+RF + HV F I+E S+F ++ +
Sbjct: 70 PKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASEDQETDEHG 129
Query: 63 KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
+ + G E+D R RDFT+N L +DP+ + + DY G+ D++K +++ +
Sbjct: 130 RILRDNVFGSQEEDAKR------RDFTMNALYYDPHNEEVIDYHDGVADLKKRQIRIIGD 183
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
++ED R+LRA+R AA+L T ++ ++ I + RL EM +L G
Sbjct: 184 PVKRYREDPVRMLRAVRFAAKLNGAIDPATRQPIQTMADLIENVPASRLFDEMLKLLTCG 243
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
A LR L GL + LLP+ L + G
Sbjct: 244 HAMDCLRQLRADGLHKGLLPLLDVVLEQPG 273
>gi|126666509|ref|ZP_01737487.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacter sp.
ELB17]
gi|126628897|gb|EAZ99516.1| tRNA nucleotidyltransferase/poly(A) polymerase [Marinobacter sp.
ELB17]
Length = 454
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 139/309 (44%), Gaps = 28/309 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSG----- 55
+L+ PKDFDI T A +EV +F ++G+RF I HV F ++EV++F +
Sbjct: 70 LLSGQPKDFDIATDATPEEVHELFRNSRLIGRRFRIVHVVFGREVIEVTTFRGNANPADD 129
Query: 56 ----RRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
R+ S + + G E+D L+RDFTIN L + + D+ GI+D
Sbjct: 130 DDDDRKTSEHGQLLRDNVYGNLEED------ALRRDFTINALYYCIRDFSVIDFANGIDD 183
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
+ +++ + T ++ED R+LRAIR AA+L F T ++ L+P + + RL
Sbjct: 184 LNNRQMRLIGDPETRYREDPVRMLRAIRFAAKLDFAIEPATEAPIRELAPLLTHIPAARL 243
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231
E+ + + G EA+ L + LL L P A+ L + L+ N D
Sbjct: 244 FDEVLKLFSAGYGEATFDKLRHYDLLAPLFPDTASALAA------GEPDELIRQALRNTD 297
Query: 232 KLLAPDRPCH------SSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIA 285
+A + + LW A+ A + D DP+ A+ G ++A I
Sbjct: 298 ARIAQGKSVTPYFLFAAMLWPALQAEWRRRQDNG-DPVQPALHGAISKVIGRQVQATSIP 356
Query: 286 RRINKSHDE 294
+R + E
Sbjct: 357 KRFSGPMKE 365
>gi|85711815|ref|ZP_01042871.1| Poly(A) polymerase [Idiomarina baltica OS145]
gi|85694430|gb|EAQ32372.1| Poly(A) polymerase [Idiomarina baltica OS145]
Length = 454
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/293 (24%), Positives = 140/293 (47%), Gaps = 29/293 (9%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T+A ++V ++F C +VG+RF + H+ F I+EV++F + + +
Sbjct: 64 PKDFDVTTNATPEQVKKLFRNCRLVGRRFRLAHIVFGKDIIEVATFRGHHKEDDSEAASQ 123
Query: 66 F-ERPIG-CDEKDFIRWRNCL--------QRDFTINGLMFDPYAKIIYDYIGGIEDIRKA 115
++P DE+ F+ N +RDFT+N + ++ IYD+ GG +D+
Sbjct: 124 TRKQPTAKTDEQGFLVRDNVYGSIEEDAERRDFTVNAMYYNIADFCIYDFAGGKKDLDAG 183
Query: 116 KVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEM 175
++ + A ++ED R+LRAIR A +L + + + ++ + + RL E
Sbjct: 184 VIRLIGDAEQRYREDPVRMLRAIRFATKLNMQMDKHVQEPIVEMASLLRNIPPARLFDEF 243
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRS---NLLLSLFSNLDK 232
M G A A+ ++ + L + + P+ YL +D++S L+ S+ DK
Sbjct: 244 LKMFMAGKASANFEMMVQHNLFQQMFPVLKTYL-------KDEQSPAIALIQRALSDTDK 296
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIA 285
+ ++ + +A++ ++ P+ L V +G ++A+ IA
Sbjct: 297 RVNNEQRVTPAYLLAVMLWY---------PMEARRSQLEVESGLPPMDALNIA 340
>gi|393762864|ref|ZP_10351488.1| poly(A) polymerase [Alishewanella agri BL06]
gi|392606203|gb|EIW89090.1| poly(A) polymerase [Alishewanella agri BL06]
Length = 487
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 22/293 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD++T+A+ +E+ +VF C ++G+RF + HV F ++EV++F G
Sbjct: 90 LLGLQPKDFDVVTNAKPEEIKQVFRNCRLIGRRFRLAHVVFGREVIEVATFR--GHHSGA 147
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL--------QRDFTINGLMFDPYAKIIYDYIGGIEDI 112
D + + + + I N +RDF++N L + IYD+ G++ I
Sbjct: 148 DDEEDSSKIASLSDHGQILRDNVYGTIEEDAERRDFSVNALYYSIKDFAIYDFANGMQSI 207
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
+ +++ + T ++ED R+LRAIR A +L + + +TA + L+ + + RL
Sbjct: 208 AERRIELIGDPETRYREDPVRMLRAIRFATKLNMQIAPDTARDIPELAVLLKNIPAPRLF 267
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E+ M G + L+ + + +VLLP Q L+K K L+ + D+
Sbjct: 268 DELVKMWLAGKGFDNFMLMRELKVFKVLLP-QLEKLLKQ--EPEGKAFQLVTRALQDTDQ 324
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIA 285
+A D+P + A + ++ P+ V +L + +G + +A+ IA
Sbjct: 325 RVAQDKPVTPAFVFAAMLWY---------PVEVRAQTLLIESGLNENDALSIA 368
>gi|311104114|ref|YP_003976967.1| poly(A) polymerase [Achromobacter xylosoxidans A8]
gi|310758803|gb|ADP14252.1| poly(A) polymerase [Achromobacter xylosoxidans A8]
Length = 454
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 109/210 (51%), Gaps = 9/210 (4%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---STSGRRFSRDF 62
PKDFD+ T+A +++ +F + I+G+RF + HV F I+E S+F ++ +
Sbjct: 70 PKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASEDQETDEHG 129
Query: 63 KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
+ + G E+D R RDFT+N L +DP+ + + D+ G+ D++K +V+ +
Sbjct: 130 RILRDNVFGSHEEDAAR------RDFTMNALYYDPHNEEVIDFHNGVADLKKRQVRIIGD 183
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
+ ++ED R+LRA+R AA+L T + ++ I + RL EM +L G
Sbjct: 184 PAKRYREDPVRMLRAVRFAAKLNGTIDPATRQPISTMAELIDNVPASRLFDEMLKLLTCG 243
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
A LR L GL + LLP+ L + G
Sbjct: 244 HAMDCLRQLRADGLHKGLLPLLDVVLEQPG 273
>gi|442610666|ref|ZP_21025376.1| Poly(A) polymerase [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441747695|emb|CCQ11438.1| Poly(A) polymerase [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 437
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 119/259 (45%), Gaps = 30/259 (11%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF------STSGRRFS 59
PKDFD++T+A +E+ R+F C ++G+RF + H+ F I+EV++ S G S
Sbjct: 55 PKDFDVVTNATPEEIKRIFRNCRLIGRRFRLAHIVFGQEIIEVATMRGHHSDSPKGNNIS 114
Query: 60 RDFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ DE +R + +RDF+IN L + + DY GG+ I
Sbjct: 115 Q----------ASDEGQLLRDNVYGTIEEDAERRDFSINALYYSIDDFTVRDYAGGLAAI 164
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
++ + T ++ED R+LRA+R A +L + S TA + L+ + + RL
Sbjct: 165 NARQIDLIGDPETRYREDPVRMLRAVRFATKLNMQISPATAKPITQLAELLDNIPPARLF 224
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV--KHGFRRRDKRSNLLLSLFSNL 230
E + G A+ + LL +FGL + L P ++ GF R + +F+N
Sbjct: 225 EECLKLFLNGKAQENFTLLREFGLFKYLFPATEQAIIDDTDGFVLR-----FINQMFANT 279
Query: 231 DKLLAPDRPCHSSLWIAIL 249
D + ++ + A L
Sbjct: 280 DTRINEEKKVTPAFIFAAL 298
>gi|421079754|ref|ZP_15540691.1| Poly(A) polymerase family protein [Pectobacterium wasabiae CFBP
3304]
gi|401705521|gb|EJS95707.1| Poly(A) polymerase family protein [Pectobacterium wasabiae CFBP
3304]
Length = 452
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 143/311 (45%), Gaps = 24/311 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +V ++F C +VG+RF + H+ F ++EV++F G
Sbjct: 55 LLGKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFR--GHHDQH 112
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL--------QRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ E + + + N +RDF+IN L + + DY G+ D+
Sbjct: 113 QEQQEVKNSSQQAQSGMLLRDNIFGSVEEDAQRRDFSINSLYYSIADFSVRDYTNGLNDL 172
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
R+ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + + R+
Sbjct: 173 RQGVIRMIGDPETRYREDPVRMLRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMF 232
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E +L G + ++L ++ L + L P+ + + +G ++ ++ + N D+
Sbjct: 233 EESLKLLQSGYGYPTYKMLCEYQLFQPLFPLLSRHFTPNGDSTLER---MVAQVLKNTDQ 289
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSH 292
L D + + + + ++ PL+ LA +G +A +A +N
Sbjct: 290 RLQNDMRVNPAFLFSAMLWY---------PLIEHAQKLAQESGLAYFDAFALA--MNDVL 338
Query: 293 DESFCELLEPR 303
DE L P+
Sbjct: 339 DEQCRSLAIPK 349
>gi|385870653|gb|AFI89173.1| Poly(A) polymerase [Pectobacterium sp. SCC3193]
Length = 452
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 143/311 (45%), Gaps = 24/311 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +V ++F C +VG+RF + H+ F ++EV++F G
Sbjct: 55 LLGKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFR--GHHDQH 112
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL--------QRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ E + + + N +RDF+IN L + + DY G+ D+
Sbjct: 113 QEQQEVKNSSQQAQSGMLLRDNIFGSVEEDAQRRDFSINSLYYSISDFSVRDYTNGLNDL 172
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
R+ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + + R+
Sbjct: 173 RQGVIRMIGDPETRYREDPVRMLRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMF 232
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E +L G + ++L ++ L + L P+ + + +G ++ ++ + N D+
Sbjct: 233 EESLKLLQSGYGYPTYKMLCEYQLFQPLFPLLSRHFTPNGDSTLER---MVAQVLKNTDQ 289
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSH 292
L D + + + + ++ PL+ LA +G +A +A +N
Sbjct: 290 RLQNDMRVNPAFLFSAMLWY---------PLIEHAQKLAQESGLAYFDAFALA--MNDVL 338
Query: 293 DESFCELLEPR 303
DE L P+
Sbjct: 339 DEQCRSLAIPK 349
>gi|212213205|ref|YP_002304141.1| poly(A) polymerase [Coxiella burnetii CbuG_Q212]
gi|212011615|gb|ACJ18996.1| poly(A) polymerase [Coxiella burnetii CbuG_Q212]
Length = 438
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 29/227 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L+ PKDFDI T+A E+ ++F ++G+RF + HV+F N I+EVS+F
Sbjct: 67 LLSYHPKDFDIATNARPHEIRKLFKNSRLIGRRFRLVHVYFPNEIIEVSTFRANAEELLK 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
T S D Y G E+D WR RDFT+N L ++ +
Sbjct: 127 EEPLSEMQKTGATMLSEDNTY------GTIEEDA--WR----RDFTVNALYYNITDFSVI 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
D+ GG+ D+ + ++ + + + ED R+LRAIR+AA+L F+ +T +K L +
Sbjct: 175 DFTGGMRDLHQRLIRMIGDPTQRYHEDPVRLLRAIRLAAKLDFKIHPDTEEPLKKLHNLL 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+ RL E+ + G A S +LL + + L P A L K
Sbjct: 235 RHVPSARLFTEVLKIFFEGHAVRSYQLLKQTHYMRTLFPESATILEK 281
>gi|352081895|ref|ZP_08952737.1| poly(A) polymerase, partial [Rhodanobacter sp. 2APBS1]
gi|351682801|gb|EHA65897.1| poly(A) polymerase, partial [Rhodanobacter sp. 2APBS1]
Length = 423
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 108/229 (47%), Gaps = 10/229 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L PKDFD+ T+A EV ++F C ++G+RF + HV F I+EV++F +G
Sbjct: 57 LLGLRPKDFDVATNATPDEVKKLFRNCRLIGRRFRLAHVVFGPEIIEVATFRGTGEEGGE 116
Query: 61 DFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTV 120
++ + I D + L+RDF +N + +D + DY+GG+ D+ ++ +
Sbjct: 117 GDRHIIDGRIVRDNIWGTIEEDALRRDFRVNAMYYDISDFSVRDYVGGMRDLEDRMLRLI 176
Query: 121 IPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLA 180
T + ED R+LRA R+AA+LG + L P + RL E M
Sbjct: 177 GDPDTRYHEDPVRMLRAARLAAKLGMHIDAAAIEPFETLGPLLADAAPARLFDESLKMFL 236
Query: 181 YGSAEASLRLLWKFGLLEVLLPIQA----------AYLVKHGFRRRDKR 219
G S R+L + GLL+ L P A LV+HG D R
Sbjct: 237 SGHGLKSFRVLEQCGLLKFLFPATARALKRGDEALRALVEHGLANTDAR 285
>gi|293603552|ref|ZP_06685973.1| poly(A) polymerase [Achromobacter piechaudii ATCC 43553]
gi|292817988|gb|EFF77048.1| poly(A) polymerase [Achromobacter piechaudii ATCC 43553]
Length = 460
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 107/210 (50%), Gaps = 9/210 (4%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF---STSGRRFSRDF 62
PKDFD+ T+A +++ +F + I+G+RF + HV F I+E S+F ++ +
Sbjct: 70 PKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASEDQETDEHG 129
Query: 63 KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
+ + G E+D R RDFT+N L +DP+ + + DY G+ D++K +V+ +
Sbjct: 130 RILRDNVFGSQEEDAKR------RDFTMNALYYDPHNEEVIDYHNGVADLKKRQVRIIGD 183
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
++ED R+LRA+R AA+L T + ++ I + RL EM +L G
Sbjct: 184 PVKRYREDPVRMLRAVRFAAKLNGTIDPATREPISTMAELIENVPASRLFDEMLKLLTCG 243
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHG 212
A LR L GL LLP+ L + G
Sbjct: 244 HAMDCLRQLRADGLHNGLLPLLDVVLEQPG 273
>gi|160897631|ref|YP_001563213.1| poly(A) polymerase [Delftia acidovorans SPH-1]
gi|333916101|ref|YP_004489833.1| poly(A) polymerase [Delftia sp. Cs1-4]
gi|160363215|gb|ABX34828.1| poly(A) polymerase [Delftia acidovorans SPH-1]
gi|333746301|gb|AEF91478.1| poly(A) polymerase [Delftia sp. Cs1-4]
Length = 529
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 117/221 (52%), Gaps = 26/221 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF----ENTIVEVSSF----- 51
+L PKDFD+ T+A ++V +F + I+GKRF I HV + EN ++EVS+F
Sbjct: 71 LLGLRPKDFDVATNATPEQVKGLFRRAFIIGKRFRIVHVVYGRGRENEVIEVSTFRAFLD 130
Query: 52 STSGRRFSRDFKYEFERPIGCDE---------KDFIRW----RNCLQRDFTINGLMFDPY 98
+++ S + + + G +D + W ++ +RDFTIN + +DP
Sbjct: 131 NSAAEAVSGNERTSKAQLAGMHHAVDASGRVLRDNV-WGPQDQDATRRDFTINAMYYDPR 189
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155
+I+ DY GI+D +K ++ + +T ++ED RI+RA+R AA+L GF+ +TA
Sbjct: 190 TQIVVDYHKGIDDAKKRMLRMIGDPATRYREDPVRIIRAVRFAAKLAGKGFKIEPKTAKP 249
Query: 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGL 196
+ P + + + RL EM +L G A AS+ L GL
Sbjct: 250 LVECEPLLADVPQSRLFDEMLKLLQTGHALASVEQLRGLGL 290
>gi|320108593|ref|YP_004184183.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Terriglobus saanensis SP1PR4]
gi|319927114|gb|ADV84189.1| polynucleotide adenylyltransferase/metal dependent phosphohydrolase
[Terriglobus saanensis SP1PR4]
Length = 457
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 10/204 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHV-HFENTIVEVSSFSTSGRRFS 59
++ PKD+D+ T+A V+++F + VG F + V + + EV++F G
Sbjct: 43 LMGHAPKDYDVATNACPDAVIKLFRRTFPVGAHFGVVIVCDNDGSQTEVATFRADG---- 98
Query: 60 RDFKYE-FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
YE RP D + + L+RDFTING+M DP + D++GG +D+ ++
Sbjct: 99 ---AYEDGRRPTEVRYADTPQV-DVLRRDFTINGMMMDPVTGEVLDFVGGRDDLEAKILR 154
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM 178
+ F+ED R+LRA+R AAR GF T ++ +P+I ++ R+ E+ M
Sbjct: 155 AIGTPQVRFEEDKLRMLRAVRFAARFGFTLEPRTLQAIQAQAPTINQVSNERVRDELTRM 214
Query: 179 LAYGSAEASLRLLWKFGLLEVLLP 202
L G A + LL + GLL +LP
Sbjct: 215 LTEGHARRAFELLDETGLLREVLP 238
>gi|163855127|ref|YP_001629425.1| poly(A) polymerase [Bordetella petrii DSM 12804]
gi|163258855|emb|CAP41154.1| poly(A) polymerase [Bordetella petrii]
Length = 451
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 100/186 (53%), Gaps = 3/186 (1%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE 65
PKDFD+ T+A +++ +F + I+G+RF + HV F I+E S+F S+D + +
Sbjct: 70 PKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPA---SQDQETD 126
Query: 66 FERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPAST 125
I D + +RDFT+N L +DP+ + + DY G++D++K +V+ + +
Sbjct: 127 EHGRILRDNVFGTHEEDAARRDFTMNALYYDPHTEEVIDYHNGVQDLKKRQVRIIGDPAQ 186
Query: 126 SFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAE 185
++ED R+LRA+R AA+L T + ++P I + RL EM +L G A
Sbjct: 187 RYREDPVRMLRAVRFAAKLNGSIDPATRKPIGTMAPLIENVPASRLFDEMLKLLTCGHAM 246
Query: 186 ASLRLL 191
LR L
Sbjct: 247 DCLRQL 252
>gi|375110899|ref|ZP_09757113.1| poly(A) polymerase [Alishewanella jeotgali KCTC 22429]
gi|374568931|gb|EHR40100.1| poly(A) polymerase [Alishewanella jeotgali KCTC 22429]
Length = 487
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 143/297 (48%), Gaps = 30/297 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L PKDFD++T+A+ +E+ +VF C ++G+RF + HV F ++EV++F
Sbjct: 90 LLGLQPKDFDVVTNAKPEEIKQVFRNCRLIGRRFRLAHVVFGREVIEVATFRGHHSGVDD 149
Query: 52 ---STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
S+ S + + G E+D R RDF++N L + IYD+ G
Sbjct: 150 EEDSSKIASLSDHGQILRDNVYGTIEEDAER------RDFSVNALYYSIKDFAIYDFANG 203
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
++ I + +++ + T ++ED R+LRAIR A +L + + +TA + L+ + +
Sbjct: 204 MQSIAERRIELIGDPETRYREDPVRMLRAIRFATKLNMQIAPDTARDIPELAVLLKNIPA 263
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E+ M G + L+ + + +VLLP Q L+K K L+
Sbjct: 264 PRLFDELVKMWLAGKGFDNFMLMRELKVFKVLLP-QLEKLLKQ--EPEGKAFQLVTRALQ 320
Query: 229 NLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIA 285
+ D+ +A D+P + A + ++ P+ V +L + +G + +A+ IA
Sbjct: 321 DTDQRVAQDKPVTPAFVFAAMLWY---------PVEVRAQTLLIESGLNENDALSIA 368
>gi|257094033|ref|YP_003167674.1| poly(A) polymerase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
gi|257046557|gb|ACV35745.1| poly(A) polymerase [Candidatus Accumulibacter phosphatis clade IIA
str. UW-1]
Length = 448
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 13/187 (6%)
Query: 5 IPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSGRRFS 59
+PKDFD+ T+A ++V + F + I+G+RF I HV+ +EV++F G +
Sbjct: 69 VPKDFDVATNATPEQVRQCFRRSRIIGRRFQIVHVNMGVETIEVTTFRGHHGEQGGNKAQ 128
Query: 60 RDFKYEFERP--IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D + R G +D R RDFT+N L +DP A+ I DY G+ D+++ +
Sbjct: 129 TDDQGRVLRDNVFGSQAEDAAR------RDFTVNALYYDPTAETIIDYHHGVADLKQKTL 182
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R+AA+LG E + ++ ++ I + RL EM
Sbjct: 183 RMIGDPKTRYREDPVRMLRAVRLAAKLGLMIDPEASRPIREMTDLIENVPPSRLFDEMLK 242
Query: 178 MLAYGSA 184
+L G A
Sbjct: 243 LLTSGHA 249
>gi|29653638|ref|NP_819330.1| poly(A) polymerase [Coxiella burnetii RSA 493]
gi|153208652|ref|ZP_01946904.1| poly(A) polymerase [Coxiella burnetii 'MSU Goat Q177']
gi|161829839|ref|YP_001596236.1| poly(A) polymerase [Coxiella burnetii RSA 331]
gi|165919793|ref|ZP_02219536.1| poly(A) polymerase [Coxiella burnetii Q321]
gi|212218121|ref|YP_002304908.1| poly(A) polymerase [Coxiella burnetii CbuK_Q154]
gi|29540900|gb|AAO89844.1| poly(A) polymerase [Coxiella burnetii RSA 493]
gi|120575838|gb|EAX32462.1| poly(A) polymerase [Coxiella burnetii 'MSU Goat Q177']
gi|161761706|gb|ABX77348.1| poly(A) polymerase [Coxiella burnetii RSA 331]
gi|165916876|gb|EDR35480.1| poly(A) polymerase [Coxiella burnetii Q321]
gi|212012383|gb|ACJ19763.1| poly(A) polymerase [Coxiella burnetii CbuK_Q154]
Length = 439
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 29/227 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L+ PKDFDI T+A E+ ++F ++G+RF + HV+F N I+EVS+F
Sbjct: 67 LLSYHPKDFDIATNARPHEIRKLFKNSRLIGRRFRLVHVYFPNEIIEVSTFRANAEELLK 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
T S D Y G E+D WR RDFT+N L ++ +
Sbjct: 127 EEPLSEMQKTGATMLSEDNTY------GTIEEDA--WR----RDFTVNALYYNITDFSVI 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
D+ GG+ D+ + ++ + + + ED R+LRAIR+AA+L F+ +T +K L +
Sbjct: 175 DFTGGMRDLHQRLIRMIGDPTQRYHEDPVRLLRAIRLAAKLDFKIHPDTEEPLKKLHNLL 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+ RL E+ + G A S +LL + + L P A L K
Sbjct: 235 RHVPSARLFTEVLKIFFEGHAVRSYQLLKQTHYMRTLFPEAATILEK 281
>gi|386288405|ref|ZP_10065547.1| poly(A) polymerase [gamma proteobacterium BDW918]
gi|385278594|gb|EIF42564.1| poly(A) polymerase [gamma proteobacterium BDW918]
Length = 458
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 18/270 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF----STSGR 56
+L PKDFDI T A ++V F I+G+RF I HV F I+EV++F S
Sbjct: 72 LLGGQPKDFDIATDATPEQVRNAFRNSRIIGRRFRIVHVRFGREIIEVTTFRGNHSAPAS 131
Query: 57 RFSRDFKYEFERPIGCDEKDFIRWR---NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
R+ K+ + G +D + + +RD TIN L + +YD++GG++D+
Sbjct: 132 NPQRN-KHSAQTESGMLTRDNVYGSIDDDAARRDLTINALYYSSRDFCVYDFVGGLDDLN 190
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
++ + T ++ED R+LR +R AA+L F + + +K L+P + + R+
Sbjct: 191 NKLIRIIGDPETRYREDPVRMLRVVRFAAKLDFDIEKHSEAPIKRLAPLLNDIAAARMFD 250
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKL 233
E+ + G + L+ ++ L L P L + R ++ N D
Sbjct: 251 EVIKLFMSGQGLHTYALMQRYELFAPLFPATQKMLSQ----REPAAEEIIKQGLINTDAR 306
Query: 234 LAPDRPCHSS------LWIAILAFHKALSD 257
+A +P + LW + HK + D
Sbjct: 307 IADGKPVTPAFIYAVILWPMVKHLHKEIMD 336
>gi|359450410|ref|ZP_09239851.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20480]
gi|358043763|dbj|GAA76100.1| poly(A) polymerase [Pseudoalteromonas sp. BSi20480]
Length = 473
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 130/275 (47%), Gaps = 32/275 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD++T+A +V ++F C ++G+RF + H+ F I+EV++ G +
Sbjct: 84 LLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVATMR--GHHEAP 141
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ K + + E +R + +RDF+IN L + I+DY G+ I+
Sbjct: 142 ESKNQISQ--SSTEGQLLRDNVFGSIEEDAERRDFSINALYYSINDFSIHDYANGLAAIK 199
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+++ + T ++ED R+LRA+R A +L + + + L+ + + RL
Sbjct: 200 AKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPNSEKPISELASLLDNIPPARLFE 259
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLP------------IQAAYLVKHGFRRRDKRSN 221
E+ + G AEA+ +L ++GL L P ++ A+ V+ F+ DKR
Sbjct: 260 EVLKLFLNGKAEANFLMLRQYGLFRALFPALDKILEANPNGLEQAF-VQQMFQNTDKR-- 316
Query: 222 LLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
N DK + P + LW +LA K L
Sbjct: 317 ------INADKKVTPAFIFAALLWFPLLAITKKLQ 345
>gi|384127432|ref|YP_005510046.1| poly(A) polymerase, partial [Yersinia pestis D182038]
gi|262367096|gb|ACY63653.1| poly(A) polymerase [Yersinia pestis D182038]
Length = 351
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 110/220 (50%), Gaps = 24/220 (10%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L R PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 96 LLGRKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGH------ 149
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL---------------QRDFTINGLMFDPYAKIIYDY 105
+E ++ D+ + +N + +RDFTIN L + + DY
Sbjct: 150 ---HEQQQAEDSDKNSSQQAQNGMLLRDNIFGSIEDDAQRRDFTINSLYYGISDFALRDY 206
Query: 106 IGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK 165
GG+ D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + +
Sbjct: 207 TGGLRDLKEGIIRLIGDPETRYREDPVRMLRAVRFAAKLDMSISPETAEPIPRLASLLRE 266
Query: 166 LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQA 205
+ RL E +L G + L ++ L + L P+ A
Sbjct: 267 IPPARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIA 306
>gi|254491967|ref|ZP_05105145.1| poly(A) polymerase subfamily [Methylophaga thiooxidans DMS010]
gi|224462782|gb|EEF79053.1| poly(A) polymerase subfamily [Methylophaga thiooxydans DMS010]
Length = 456
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 126/253 (49%), Gaps = 13/253 (5%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-STSGRRFS 59
+L PKDFD+ T+A ++V ++F + ++G+RF + HV F ++EV++F + G
Sbjct: 70 LLGHEPKDFDVSTNALPEQVHKLFRRSRLIGRRFKLVHVRFGREVIEVATFRAPPGANGD 129
Query: 60 RDFKYEF--ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKV 117
D + + G E+D WR RDFT+N L ++ I DY GGIED+ +
Sbjct: 130 VDAQGRIVQDNVYGTLEQD--AWR----RDFTVNALYYNIRDFSIIDYTGGIEDLNAGVI 183
Query: 118 QTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNY 177
+ + T ++ED R+LRA+R A+LG + +T + + + + RL E
Sbjct: 184 RLIGDVETRYREDPVRMLRALRFVAKLGLQVDAKTEQGIFNWGSLLKDIPPARLFDETLK 243
Query: 178 MLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPD 237
+ G+A + LL +GL + + P Q A L+ + LL+ N D + +
Sbjct: 244 LYLSGNAAVTHELLCHYGLFDHMYP-QTAVLLHQ--EEDNYPRTLLMKALENTDSRIDAN 300
Query: 238 RPCHSS-LWIAIL 249
+P + L+ AIL
Sbjct: 301 KPVTPAFLFAAIL 313
>gi|293399437|ref|ZP_06643590.1| poly(A) polymerase [Neisseria gonorrhoeae F62]
gi|291610006|gb|EFF39128.1| poly(A) polymerase [Neisseria gonorrhoeae F62]
Length = 451
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 31/256 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKGHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S +TA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSEQTA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + ++ P+ A V G K + L L N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDI-HPLLNALRVSDGI--AGKMTALAL---KNTDERLR 289
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 290 ADKSVSVGFVLAALMW 305
>gi|386347360|ref|YP_006045609.1| poly(A) polymerase [Spirochaeta thermophila DSM 6578]
gi|339412327|gb|AEJ61892.1| poly(A) polymerase [Spirochaeta thermophila DSM 6578]
Length = 364
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 15/203 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHF-ENTIVEVSSFSTSGRRFS 59
+L + PKDFDI+T A + R+F ++G+RF + HV+ ++ VEV++F ++
Sbjct: 64 LLGKHPKDFDIVTCATPGRIKRLFPYARVIGRRFRLVHVYVTKDEYVEVTTFRSA----- 118
Query: 60 RDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQT 119
+ + G E+D +RDFT+N L +DP+++ I D++ G +R+ ++
Sbjct: 119 ---RADDPNAYGSIEED------AFRRDFTVNALYYDPFSEEILDFVDGFTHVRERRLVP 169
Query: 120 VIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML 179
+IP F+ED R+LRA++ AR+ +E ++ + + ++ RL E+ +L
Sbjct: 170 IIPLDRIFEEDPVRMLRAVKYHARMELEMPKELVRKIRDDAWRLEEVSTSRLTEEIYKIL 229
Query: 180 AYGSAEASLRLLWKFGLLEVLLP 202
A G A + L +F L + LLP
Sbjct: 230 ACGEASSVWEALQRFHLFDHLLP 252
>gi|261820477|ref|YP_003258583.1| poly(A) polymerase I [Pectobacterium wasabiae WPP163]
gi|261604490|gb|ACX86976.1| poly(A) polymerase [Pectobacterium wasabiae WPP163]
Length = 482
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 143/311 (45%), Gaps = 24/311 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +V ++F C +VG+RF + H+ F ++EV++F G
Sbjct: 85 LLGKKPKDFDITTNATPDQVRKLFRNCRLVGRRFRLAHIMFGPEVIEVATFR--GHHDQH 142
Query: 61 DFKYEFERPIGCDEKDFIRWRNCL--------QRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ E + + + N +RDF+IN L + + DY G+ D+
Sbjct: 143 QEQQEVKNSSQQAQSGMLLRDNIFGSVEEDAQRRDFSINSLYYSISDFSVRDYTNGLNDL 202
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
R+ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + + R+
Sbjct: 203 RQGVIRMIGDPETRYREDPVRMLRAVRFAAKLNMTVSPETAEPIPRLASLLHDIPAARMF 262
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E +L G + ++L ++ L + L P+ + + +G ++ ++ + N D+
Sbjct: 263 EESLKLLQSGYGYPTYKMLCEYQLFQPLFPLLSRHFTPNGDSTLER---MVAQVLKNTDQ 319
Query: 233 LLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSH 292
L D + + + + ++ PL+ LA +G +A +A +N
Sbjct: 320 RLQNDMRVNPAFLFSAMLWY---------PLIEHAQKLAQESGLAYFDAFALA--MNDVL 368
Query: 293 DESFCELLEPR 303
DE L P+
Sbjct: 369 DEQCRSLAIPK 379
>gi|389796564|ref|ZP_10199616.1| poly(A) polymerase [Rhodanobacter sp. 116-2]
gi|388448488|gb|EIM04472.1| poly(A) polymerase [Rhodanobacter sp. 116-2]
Length = 450
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 110/235 (46%), Gaps = 22/235 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR---- 56
+L PKDFD+ T+A EV ++F C ++G+RF + HV F I+EV++F +G
Sbjct: 57 LLGLRPKDFDVATNATPDEVKKLFRNCRLIGRRFRLAHVVFGPEIIEVATFRGTGEEGGE 116
Query: 57 --RFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114
R D + + G E+D +R RDF +N + +D + DY+GG+ D+
Sbjct: 117 GDRHIIDGRIVRDNIWGTIEEDAVR------RDFRVNAMYYDISDFSVRDYVGGMRDLED 170
Query: 115 AKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLME 174
++ + T + ED R+LRA R+AA+LG + L P + RL E
Sbjct: 171 RMLRLIGDPDTRYHEDPVRMLRAARLAAKLGMHIDAAAMEPFETLGPLLADAAPARLFDE 230
Query: 175 MNYMLAYGSAEASLRLLWKFGLLEVLLPIQA----------AYLVKHGFRRRDKR 219
M G S R+L + GLL+ L P A LV+HG D R
Sbjct: 231 SLKMFLSGHGLKSFRVLEQCGLLKFLFPATARALKRGDEALRALVEHGLANTDAR 285
>gi|268603255|ref|ZP_06137422.1| poly(A) polymerase [Neisseria gonorrhoeae PID1]
gi|268587386|gb|EEZ52062.1| poly(A) polymerase [Neisseria gonorrhoeae PID1]
Length = 451
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 31/256 (12%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-------RF 58
PKDFD+ T A ++V ++F + I+G+RF I HV I+EV++F + R
Sbjct: 71 PKDFDVATDATPEQVHKLFRRSRIIGRRFQIVHVMNGAEIIEVTTFRGGAKVHQNAHGRI 130
Query: 59 SRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118
+D Y G E+D +R RDFT N L +DP + I D+ GI D+ ++
Sbjct: 131 MKDNTY------GSIEEDAMR------RDFTCNALYYDPEKEEILDFHNGIADVAARRLV 178
Query: 119 TVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR---GRLLMEM 175
+ A+ +QED RILRAIR++ +LGF S +TA ++ SI +L RL E+
Sbjct: 179 MIGNAAERYQEDPVRILRAIRLSGKLGFELSEQTA---APIAESICRLKHEPVARLFDEI 235
Query: 176 NYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLA 235
+L G A L+ L F + ++ P+ A V G K + L L N D+ L
Sbjct: 236 MKLLFSGHARECLKRLNGFDIPDI-HPLLNALRVSDGI--AGKMTALAL---KNTDERLR 289
Query: 236 PDRPCHSSLWIAILAF 251
D+ +A L +
Sbjct: 290 ADKSVSVGFVLAALMW 305
>gi|119468903|ref|ZP_01611928.1| poly(A) polymerase I [Alteromonadales bacterium TW-7]
gi|119447555|gb|EAW28822.1| poly(A) polymerase I [Alteromonadales bacterium TW-7]
Length = 475
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 130/275 (47%), Gaps = 32/275 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD++T+A +V ++F C ++G+RF + H+ F I+EV++ G +
Sbjct: 86 LLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVATMR--GHHEAP 143
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ K + + E +R + +RDF+IN L + I+DY G+ I+
Sbjct: 144 ESKNQISQ--SSTEGQLLRDNVFGSIEEDAERRDFSINALYYSINDFSIHDYANGLAAIK 201
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+++ + T ++ED R+LRA+R A +L + + + L+ + + RL
Sbjct: 202 AKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPNSEKPISELASLLDNIPPARLFE 261
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLP------------IQAAYLVKHGFRRRDKRSN 221
E+ + G AEA+ +L ++GL L P ++ A+ V+ F+ DKR
Sbjct: 262 EVLKLFLNGKAEANFLMLRQYGLFRALFPALDKILEANPNGLEQAF-VQQMFQNTDKR-- 318
Query: 222 LLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
N DK + P + LW +LA K L
Sbjct: 319 ------INADKKVTPAFIFAALLWFPLLAITKKLQ 347
>gi|392536777|ref|ZP_10283914.1| poly(A) polymerase [Pseudoalteromonas marina mano4]
Length = 475
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 130/275 (47%), Gaps = 32/275 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD++T+A +V ++F C ++G+RF + H+ F I+EV++ G +
Sbjct: 86 LLGQQPKDFDVVTNATPDQVKKLFRNCRLIGRRFRLAHIVFGREIIEVATMR--GHHEAP 143
Query: 61 DFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
+ K + + E +R + +RDF+IN L + I+DY G+ I+
Sbjct: 144 ESKNQISQ--SSTEGQLLRDNVFGSIEEDAERRDFSINALYYSINDFSIHDYANGLAAIK 201
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+++ + T ++ED R+LRA+R A +L + + + L+ + + RL
Sbjct: 202 AKQIELIGDPETRYREDPVRMLRAVRFATKLDMSIAPNSEKPISELASLLDNIPPARLFE 261
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLP------------IQAAYLVKHGFRRRDKRSN 221
E+ + G AEA+ +L ++GL L P ++ A+ V+ F+ DKR
Sbjct: 262 EVLKLFLNGKAEANFLMLRQYGLFRALFPALDKILEANPNGLEQAF-VQQMFQNTDKR-- 318
Query: 222 LLLSLFSNLDKLLAPDRPCHSSLWIAILAFHKALS 256
N DK + P + LW +LA K L
Sbjct: 319 ------INADKKVTPAFIFAALLWFPLLAITKKLQ 347
>gi|383933743|ref|ZP_09987187.1| poly(A) polymerase [Rheinheimera nanhaiensis E407-8]
gi|383705349|dbj|GAB57278.1| poly(A) polymerase [Rheinheimera nanhaiensis E407-8]
Length = 498
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 9/211 (4%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST--SGRRF 58
+L PKDFD++T+AE ++V +VF C ++G+RF + HV F ++EV++F SG
Sbjct: 104 LLGLKPKDFDVVTNAEPEQVKQVFRNCRLIGRRFRLAHVVFGREVIEVATFRGHHSGSDD 163
Query: 59 SRDFKYEFERPIGCDEKDFIR-------WRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
D + + ++ +R + +RDFTIN L + +YD+ G++
Sbjct: 164 DEDTTPKAKTASSSEQGQILRDNVYGTIEEDAERRDFTINALYYSVSDFSVYDFANGLQA 223
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
I + K++ + T ++ED RILRAIR A +L + + TA + L+ + + RL
Sbjct: 224 IAERKIELIGDPQTRYREDPVRILRAIRFATKLNMQIAPATAAPITELAVLLKNIPAPRL 283
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLP 202
E+ +L G A + L+ +L+ LLP
Sbjct: 284 FDELVKLLLAGKAFDNFMLMRDTRVLKQLLP 314
>gi|120610653|ref|YP_970331.1| poly(A) polymerase [Acidovorax citrulli AAC00-1]
gi|120589117|gb|ABM32557.1| poly(A) polymerase [Acidovorax citrulli AAC00-1]
Length = 531
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 33/277 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHV----HFENTIVEVSSF----- 51
+L PKDFD+ T+A ++V +F + I+GKRF I HV E+ ++EVS+F
Sbjct: 71 LLGLKPKDFDVATNATPEQVKGLFRRAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLD 130
Query: 52 STSGRRFSRDFKYEFERPIGCDE---------KDFIRW----RNCLQRDFTINGLMFDPY 98
+ + + S + K G +D + W + +RDFTIN + +DP
Sbjct: 131 NAAAEQVSGNEKTSRAALAGMQHAVDASGRVLRDNV-WGPQDEDATRRDFTINAMYYDPA 189
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155
+++ DY GI+D RK ++ + +T ++ED RI+RA+R AA+L GF +TA
Sbjct: 190 TQVVVDYHKGIQDARKKVIRMIGDPATRYREDPVRIIRAVRFAAKLAGVGFTIEPKTAAP 249
Query: 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRR 215
+ + + + R+ EM +L G A A++ L K GL + P+ + + G
Sbjct: 250 LVESQALLADVPQSRMFDEMLKLLQTGHAIATIEQLRKLGLATGIYPLLDVVVERAG--- 306
Query: 216 RDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
++ + + ++ D+ + +P S +A + +
Sbjct: 307 ----TSFVSAALADTDRRVGEGKPVAPSFLLACVLWQ 339
>gi|221133901|ref|ZP_03560206.1| poly(A) polymerase I [Glaciecola sp. HTCC2999]
Length = 443
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 111/225 (49%), Gaps = 16/225 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-------ST 53
+LN+ PKDFDI T A +++ F C I+G+RF + HV F I+EV++F
Sbjct: 58 LLNQHPKDFDIATDATPEQIKAQFKNCRIIGRRFRLAHVVFGREIIEVATFRGPHIQDKN 117
Query: 54 SGRRFSRDFKYEFERP--IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIED 111
+ + +D + + R G E+D R RDFTIN + ++ I D+ GGI+
Sbjct: 118 TSDKSKKDGEGQLVRDNVFGTLEQDAAR------RDFTINAMYYNVVDGTIRDFAGGIDS 171
Query: 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRL 171
I + + + T ++ED R++RA+R AA+L + + + + + RL
Sbjct: 172 IEEKTISLIGDPETRYREDPVRMIRAVRFAAKLDMTIDEVSDEAIHKFAYLLENIPPARL 231
Query: 172 LMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRR 216
E+ +L G + +LL ++GL + L P Q L+K R R
Sbjct: 232 FEEVLKLLFSGQGLTTYQLLLEYGLFDKLFP-QTGPLLKTDSRER 275
>gi|440232304|ref|YP_007346097.1| poly(A) polymerase [Serratia marcescens FGI94]
gi|440054009|gb|AGB83912.1| poly(A) polymerase [Serratia marcescens FGI94]
Length = 532
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 108/215 (50%), Gaps = 16/215 (7%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A ++V ++F C +VG+RF + HV F I+EV++F +
Sbjct: 139 LLGKKPKDFDITTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQNPE 198
Query: 61 DFKYEFERP----------IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
K ++ G E+D R RDFTIN L + + DY+GG+
Sbjct: 199 HDKNSSQQAQSGMLLRDNIFGSIEEDAQR------RDFTINSLYYGVADFALRDYVGGLR 252
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
D+++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + + R
Sbjct: 253 DLQQGVIRLIGDPETRYREDPVRMLRAVRFAAKLDMTISEETAEPLPRLASLLHDIPPAR 312
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQA 205
L E +L G + L ++ L + L P+ A
Sbjct: 313 LFEESLKLLQSGYGFQTYLKLCEYQLFQPLFPLIA 347
>gi|326317987|ref|YP_004235659.1| poly(A) polymerase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323374823|gb|ADX47092.1| poly(A) polymerase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 530
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 33/277 (11%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHV----HFENTIVEVSSF----- 51
+L PKDFD+ T+A ++V +F + I+GKRF I HV E+ ++EVS+F
Sbjct: 71 LLGLKPKDFDVATNATPEQVKGLFRRAFIIGKRFRIVHVVHGRGREHEVIEVSTFRAYLD 130
Query: 52 STSGRRFSRDFKYEFERPIGCDE---------KDFIRW----RNCLQRDFTINGLMFDPY 98
+ + + S + K G +D + W + +RDFTIN + +DP
Sbjct: 131 NAAAEQVSGNEKTSKAALAGMQHAVDASGRVLRDNV-WGPQDEDATRRDFTINAMYYDPA 189
Query: 99 AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAHF 155
+++ DY GI+D RK ++ + +T ++ED RI+RA+R AA+L GF +TA
Sbjct: 190 TQVVVDYHKGIQDARKKVIRMIGDPATRYREDPVRIIRAVRFAAKLAGVGFTIEPKTAAP 249
Query: 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRR 215
+ + + + R+ EM +L G A A++ L K GL + P+ + + G
Sbjct: 250 LVQSQTLLADVPQSRMFDEMLKLLQTGHAIATIEQLKKLGLSTGIYPLLDVVVERAG--- 306
Query: 216 RDKRSNLLLSLFSNLDKLLAPDRPCHSSLWIAILAFH 252
++ + + ++ D+ + +P S +A + +
Sbjct: 307 ----TSFVSAALADTDRRVGEGKPVAPSFLLACVLWQ 339
>gi|429462560|ref|YP_007184023.1| poly(A) polymerase [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
gi|429338074|gb|AFZ82497.1| poly(A) polymerase [Candidatus Kinetoplastibacterium crithidii (ex
Angomonas deanei ATCC 30255)]
Length = 409
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 126/254 (49%), Gaps = 18/254 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST---SGRRFSRDF 62
PKDFDI T+A +EV +F + I+GKRF I HV ++E+S+F + F R
Sbjct: 52 PKDFDIATNASPEEVRSLFRRAYIIGKRFRIVHVIMGKELIEISTFRSPPLEKDEFGRIL 111
Query: 63 KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
K + G ++D R RDFTIN L ++P + I DY G++D++ +++ +
Sbjct: 112 K---DNSFGSHQEDASR------RDFTINSLYYNPMKQEIIDYYSGLKDLKYKRIRIIGN 162
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
A ++ED R+LRAIR++ ++ + T + L I+ + + RL E+ +L G
Sbjct: 163 AGERYREDPVRMLRAIRLSTKINGTLEKNTNIEIDALKDLIVNIPQARLFDEIIKILTCG 222
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHS 242
++ + L L +L L+P L K ++D N L +N D L+ ++
Sbjct: 223 NSFSCLEQLHAKNILHNLIP----SLNKTFTNKKD--INFLKIALNNTDYRLSTNKSISP 276
Query: 243 SLWIAILAFHKALS 256
+AI+ + S
Sbjct: 277 GFLLAIILWEPTKS 290
>gi|444921526|ref|ZP_21241361.1| Poly(A) polymerase [Wohlfahrtiimonas chitiniclastica SH04]
gi|444507253|gb|ELV07430.1| Poly(A) polymerase [Wohlfahrtiimonas chitiniclastica SH04]
Length = 408
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 117/239 (48%), Gaps = 16/239 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFDI T+A +++ R+F C +VG+RF + H+ F I+EV++F + S
Sbjct: 47 LLKKSPKDFDIATNAHPEQIKRLFRNCRLVGRRFRLAHILFGRDIIEVATFRAN----SD 102
Query: 61 DFKYEFERPIGCDEKDFIRWR-------NCLQRDFTINGLMFDPYAKIIYDYIGGIEDIR 113
D + +R +G D+ IR + ++RDFTIN L +DP + D+ G ED+
Sbjct: 103 DDEEHKDRKVG-DDGFLIRDNVYGTIEDDAVRRDFTINALYYDPIRNEVIDFTNGYEDLL 161
Query: 114 KAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLM 173
+ ++ + + F+ED R+LRA+R +LGF + + + + + R+
Sbjct: 162 QGQLNLIGDPAKRFREDPVRMLRAVRFEVKLGFTMPETLINAINDMGYLLQTVSAARMFD 221
Query: 174 EMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDK 232
E+ ++ G L + L + P L++ G + +LL++ N D
Sbjct: 222 EVVKLMLNGYGHQVYLRLRHYHLFSQIFPQTERALIELG----NPEDHLLIAALHNSDN 276
>gi|451811685|ref|YP_007448140.1| poly(A) polymerase [Candidatus Kinetoplastibacterium crithidii
TCC036E]
gi|451776843|gb|AGF47842.1| poly(A) polymerase [Candidatus Kinetoplastibacterium crithidii
TCC036E]
Length = 410
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 126/254 (49%), Gaps = 18/254 (7%)
Query: 6 PKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFST---SGRRFSRDF 62
PKDFDI T+A +EV +F + I+GKRF I HV ++E+S+F + F R
Sbjct: 67 PKDFDIATNASPEEVRSLFRRAYIIGKRFRIVHVIMGKELIEISTFRSPPLEKDEFGRIL 126
Query: 63 KYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIP 122
K + G ++D R RDFTIN L ++P + I DY G++D++ +++ +
Sbjct: 127 K---DNSFGSHQEDASR------RDFTINSLYYNPMKQEIIDYYSGLKDLKYKRIRIIGN 177
Query: 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG 182
A ++ED R+LRAIR++ ++ + T + L I+ + + RL E+ +L G
Sbjct: 178 AGERYREDPVRMLRAIRLSTKINGTLEKNTNIEIDALKDLIVNIPQARLFDEIIKILTCG 237
Query: 183 SAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLDKLLAPDRPCHS 242
++ + L L +L L+P L K ++D N L +N D L+ ++
Sbjct: 238 NSFSCLEQLHAKNILHNLIP----SLNKTFTNKKD--INFLKIALNNTDYRLSTNKSISP 291
Query: 243 SLWIAILAFHKALS 256
+AI+ + S
Sbjct: 292 GFLLAIILWEPTKS 305
>gi|329896232|ref|ZP_08271410.1| Poly(A) polymerase [gamma proteobacterium IMCC3088]
gi|328921903|gb|EGG29270.1| Poly(A) polymerase [gamma proteobacterium IMCC3088]
Length = 424
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 119/260 (45%), Gaps = 25/260 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSR 60
+L + PKDFD+ T+A ++V +F IVG+RF I HV I+EV++F G
Sbjct: 44 LLGKTPKDFDVATNATPEQVHALFRGSRIVGRRFQIVHVRMGRDIIEVTTFR--GHHSES 101
Query: 61 DFKYEFERP----------IGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIE 110
D K ++ G E+D IR RD T+N L +DP + DY G+
Sbjct: 102 DNKNTAKQGRSGVLLRDNVFGTLEQDAIR------RDLTVNALYYDPVEDTVIDYTEGLR 155
Query: 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGR 170
DI +++ + T ++ED R+LR +R A+LGF T + +P + ++ R
Sbjct: 156 DIAARRLKIIGDPETRYREDPVRMLRVLRFQAKLGFDIDSATNQALNDCAPLLAQIPAAR 215
Query: 171 LLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL-VKHGFRRRDKRSNLLLSLFSN 229
L E G A+ +L + + + L P A Y+ K +R +L + N
Sbjct: 216 LFDEFLKGFMAGHAKPFSEILLQTPVWQELFPDSAQYIDAKVCYR------PMLFAAMGN 269
Query: 230 LDKLLAPDRPCHSSLWIAIL 249
D+ + +P + +A +
Sbjct: 270 TDQRINAGQPVTPAFLLAAI 289
>gi|238759902|ref|ZP_04621057.1| Poly(A) polymerase [Yersinia aldovae ATCC 35236]
gi|238701886|gb|EEP94448.1| Poly(A) polymerase [Yersinia aldovae ATCC 35236]
Length = 448
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 27/276 (9%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L + PKDFDI TSA ++V ++F C +VG+RF + HV F I+EV++F
Sbjct: 53 LLGKKPKDFDITTSATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEQQPA 112
Query: 52 STSGRRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGG 108
S + S+ + + G E D R RDFTIN L + + DY GG
Sbjct: 113 EDSDKNSSQQAQNGMLLRDNIFGTIEDDAQR------RDFTINSLYYGISDFALRDYTGG 166
Query: 109 IEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR 168
+ D++ ++ + T ++ED R+LRA+R AA+L S ETA + L+ + ++
Sbjct: 167 LRDLKAGIIRLIGSPETRYREDPVRMLRAVRFAAKLDMALSPETAEPIPRLASLLREIPP 226
Query: 169 GRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFS 228
RL E +L G + L ++ L + L P+ A + + +L +
Sbjct: 227 ARLFEESLKLLQSGYGYKTYLKLCEYQLFQPLFPLIARHFTEE---HDSPMERILEQVLK 283
Query: 229 NLDKLLAPDRPCHSS------LWIAILAFHKALSDQ 258
N D L D+ + + LW ++ + L+ +
Sbjct: 284 NTDHRLHNDQRVNPAFLFAAMLWYPLIEHAQKLTQE 319
>gi|154707640|ref|YP_001425127.1| poly(A) polymerase [Coxiella burnetii Dugway 5J108-111]
gi|154356926|gb|ABS78388.1| poly(A) polymerase [Coxiella burnetii Dugway 5J108-111]
Length = 439
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 29/227 (12%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF--------- 51
+L+ PKDFDI T+A E+ ++F ++G+RF + HV+F N I+EVS+F
Sbjct: 67 LLSYHPKDFDIATNARPHEIRKLFKNSRLIGRRFRLVHVYFPNEIIEVSTFRANAEELLK 126
Query: 52 --------STSGRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIY 103
T S D Y G E+D +RDFT+N L ++ +
Sbjct: 127 EEPLSEMQKTGATMLSEDNTY------GTIEED------ARRRDFTVNALYYNITDFSVI 174
Query: 104 DYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSI 163
D+ GG+ D+ + ++ + + + ED R+LRAIR+AA+L F+ +T +K L +
Sbjct: 175 DFTGGMRDLHRRLIRMIGDPTQRYHEDPVRLLRAIRLAAKLDFKIHPDTEEPLKKLHNLL 234
Query: 164 LKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
+ RL E+ + G A S +LL + + L P A L K
Sbjct: 235 RHVPSARLFTEVLKIFFEGHAVRSYQLLKQTHYMRTLFPEAATILEK 281
>gi|424033964|ref|ZP_17773375.1| poly(A) polymerase [Vibrio cholerae HENC-01]
gi|424039734|ref|ZP_17778040.1| poly(A) polymerase [Vibrio cholerae HENC-02]
gi|408874077|gb|EKM13260.1| poly(A) polymerase [Vibrio cholerae HENC-01]
gi|408892653|gb|EKM30087.1| poly(A) polymerase [Vibrio cholerae HENC-02]
Length = 413
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 110/218 (50%), Gaps = 14/218 (6%)
Query: 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSF-----STSG 55
+L + PKDFDI T+A +++ ++F C ++G+RF + H+ F I+EV++F
Sbjct: 23 LLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQKN 82
Query: 56 RRFSRDFKYEF---ERPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDI 112
+ S+ K + G ++D R RDFTIN + ++ I+DY GIED+
Sbjct: 83 KNVSQQSKEGMLLRDNVYGTIDEDAER------RDFTINSMYYNIADYSIHDYARGIEDL 136
Query: 113 RKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLL 172
V+ + T ++ED R+LRAIR A +L F +TA ++ +S + + RL
Sbjct: 137 EDRLVRLIGDPETRYREDPVRMLRAIRFAVKLDFDIEEDTAAPIEEMSTLLRDIPSARLF 196
Query: 173 MEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK 210
E +L G + LL ++ L + L P A + +
Sbjct: 197 EESLKLLQSGHGLETYHLLREYNLFQQLFPAIAEHFTE 234
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.326 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,191,390,685
Number of Sequences: 23463169
Number of extensions: 202406033
Number of successful extensions: 538798
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3687
Number of HSP's successfully gapped in prelim test: 2090
Number of HSP's that attempted gapping in prelim test: 530000
Number of HSP's gapped (non-prelim): 6205
length of query: 356
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 213
effective length of database: 9,003,962,200
effective search space: 1917843948600
effective search space used: 1917843948600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)