Query 018413
Match_columns 356
No_of_seqs 339 out of 1802
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11623 pcnB poly(A) polymera 100.0 4.2E-60 9.1E-65 475.3 26.1 281 1-291 80-376 (472)
2 TIGR01942 pcnB poly(A) polymer 100.0 6.9E-58 1.5E-62 454.0 29.3 316 1-330 43-380 (410)
3 KOG2159 tRNA nucleotidyltransf 100.0 7.2E-55 1.6E-59 426.4 13.4 349 1-355 42-406 (416)
4 COG0617 PcnB tRNA nucleotidylt 100.0 6.4E-50 1.4E-54 401.8 17.1 197 1-206 36-233 (412)
5 TIGR02692 tRNA_CCA_actino tRNA 100.0 1.3E-47 2.9E-52 390.5 29.9 221 1-231 41-271 (466)
6 PRK13299 tRNA CCA-pyrophosphor 100.0 2.3E-47 4.9E-52 380.7 28.3 191 1-205 34-229 (394)
7 PRK10885 cca multifunctional t 100.0 1.2E-44 2.6E-49 362.7 22.2 216 1-232 14-241 (409)
8 PRK13298 tRNA CCA-pyrophosphor 100.0 1.3E-44 2.8E-49 360.3 22.0 208 1-223 14-234 (417)
9 PRK13297 tRNA CCA-pyrophosphor 100.0 2.9E-43 6.4E-48 344.1 17.6 192 1-207 25-222 (364)
10 PRK13296 tRNA CCA-pyrophosphor 100.0 1.1E-40 2.3E-45 323.9 18.7 189 1-207 14-211 (360)
11 PF01743 PolyA_pol: Poly A pol 99.9 1.9E-26 4.1E-31 196.2 9.2 111 1-118 12-126 (126)
12 cd05398 NT_ClassII-CCAase Nucl 99.9 3.2E-24 7E-29 185.5 10.2 105 1-114 30-139 (139)
13 PRK03381 PII uridylyl-transfer 99.7 3.5E-16 7.5E-21 168.6 12.1 119 112-233 313-435 (774)
14 PRK00275 glnD PII uridylyl-tra 99.7 2.6E-16 5.6E-21 171.9 10.8 132 102-236 339-478 (895)
15 PRK00227 glnD PII uridylyl-tra 99.6 7.1E-16 1.5E-20 163.3 12.4 117 112-233 275-395 (693)
16 TIGR01693 UTase_glnD [Protein- 99.6 5.7E-16 1.2E-20 168.8 11.6 120 112-234 319-444 (850)
17 PRK05092 PII uridylyl-transfer 99.6 6.2E-15 1.4E-19 162.0 14.5 119 112-235 384-510 (931)
18 PRK03059 PII uridylyl-transfer 99.6 3.8E-15 8.2E-20 162.1 10.9 123 110-235 327-457 (856)
19 PRK01759 glnD PII uridylyl-tra 99.5 8.9E-13 1.9E-17 143.7 18.8 122 110-236 324-454 (854)
20 PF12627 PolyA_pol_RNAbd: Prob 99.4 5.2E-13 1.1E-17 99.9 6.5 62 145-206 1-62 (64)
21 PRK05007 PII uridylyl-transfer 99.4 1E-12 2.2E-17 143.8 11.2 122 111-235 349-478 (884)
22 PHA01806 hypothetical protein 99.3 8.8E-12 1.9E-16 111.5 7.3 75 1-98 49-151 (200)
23 PRK04374 PII uridylyl-transfer 99.2 1.9E-10 4.1E-15 125.6 17.4 121 112-235 339-466 (869)
24 COG2844 GlnD UTP:GlnB (protein 99.0 7.8E-09 1.7E-13 109.5 15.6 120 112-234 336-462 (867)
25 PF12626 PolyA_pol_arg_C: Poly 68.1 7.8 0.00017 32.9 4.1 66 264-330 7-85 (124)
26 cd07749 NT_Pol-beta-like_1 Nuc 66.3 16 0.00034 32.4 5.7 44 4-49 35-89 (156)
27 PF13735 tRNA_NucTran2_2: tRNA 45.5 1.1E+02 0.0023 26.0 7.4 93 243-349 8-103 (149)
28 PRK11639 zinc uptake transcrip 33.7 1.9E+02 0.0041 25.5 7.3 63 138-200 14-79 (169)
29 cd05402 NT_PAP_TUTase Nucleoti 25.0 2.6E+02 0.0057 22.3 6.3 47 3-49 33-97 (114)
30 PF15507 DUF4649: Domain of un 24.3 1.9E+02 0.0041 22.4 4.7 38 12-49 15-53 (72)
31 PRK06253 O-phosphoseryl-tRNA s 21.8 2.4E+02 0.0052 29.9 6.5 106 68-207 70-177 (529)
32 PF14091 DUF4269: Domain of un 21.6 2.4E+02 0.0052 24.9 5.5 47 3-49 29-88 (152)
33 COG0735 Fur Fe2+/Zn2+ uptake r 21.3 2.9E+02 0.0062 23.8 6.0 63 138-200 9-74 (145)
No 1
>PRK11623 pcnB poly(A) polymerase I; Provisional
Probab=100.00 E-value=4.2e-60 Score=475.30 Aligned_cols=281 Identities=27% Similarity=0.496 Sum_probs=242.4
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccc-------ccccc--cCCCC
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRD-------FKYEF--ERPIG 71 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~-------~~~~~--~~~~~ 71 (356)
|||++||||||+|+|+|+||+++|+++.++|++|+++||.+++..|||+|||++.....+. ..+.. ....|
T Consensus 80 LLG~~pkD~DIaT~A~peev~~lf~~~r~iGrrF~~~hV~~~~~~iEVaTfR~~~~~~~~~~~~~~~~~~g~~~rdn~~g 159 (472)
T PRK11623 80 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNESDRNTSQRGQNGMLLRDNIFG 159 (472)
T ss_pred HcCCCCCCEEEecCCCHHHHHHHhhhCeeecCCCCEEEEEECCceEEEeccccccccccccccccccCCCCceecccCCC
Confidence 6999999999999999999999999999999999999999999999999999875322111 01111 12357
Q ss_pred CchHhhHHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHH
Q 018413 72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE 151 (356)
Q Consensus 72 ~~~eDl~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~ 151 (356)
+++||+. ||||||||||||+.++.|+|||||++||++|+||+||+|+.+|.|||+|||||+|||++|||+|+++
T Consensus 160 tieeDl~------RRDFTINALayd~~~~~IiD~~gG~~DLk~riLR~IGdp~~rf~EDPlRmLRAvRFAArLgF~Ie~~ 233 (472)
T PRK11623 160 SIEEDAQ------RRDFTINSLYYSVADFTVRDYVGGMKDLKEGVIRLIGNPETRYREDPVRMLRAVRFAAKLDMRISPE 233 (472)
T ss_pred CHHHHHH------hccccHHHheecCCCCeEecCCCCHHHHhCCceeecCChHhhcccchHHHHHHHHHHHHhCCCcCHH
Confidence 8899995 9999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHhHhhcCCccCchhHHHHHHHHHHHH
Q 018413 152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSNLD 231 (356)
Q Consensus 152 T~~~i~~~~~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~~~~~~~~~~~~~~~~~l~~~l~~ld 231 (356)
|.++|++++++|..+|+|||++|+.|+|.++++..++++|.++|++..+||++..++..+.- ...+.++..++.++|
T Consensus 234 T~~aI~~~a~lL~~vs~eRI~~El~KlL~~~~~~~~~~lL~e~GLl~~lfPel~~~~~~~~~---~~~~~~~~~~l~~tD 310 (472)
T PRK11623 234 TAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGD---SPMERIIEQVLKNTD 310 (472)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHhccccc---cHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987643221 123467789999999
Q ss_pred hhhCCCCCCCcc------hHHHHHHHHHHHhcCCCChhHHHHHHHHHhcc-hhHHHHHHHhhhhhcc
Q 018413 232 KLLAPDRPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNG-GDMLEAVKIARRINKS 291 (356)
Q Consensus 232 ~~~~~~~~~~~~------~W~~~la~~~~l~~~~~~~~~~~~~~~a~~~~-~~~~~~v~~~~r~~~~ 291 (356)
+++..++++++. +|..+....+.+..+.+.+ ...++..|+... .++.+.++||||++.+
T Consensus 311 ~ri~~~~~v~p~fl~a~llw~~~~~~~~~~~~~~~~~-~~~a~~~a~~~~l~~~~~~~~ip~r~~~~ 376 (472)
T PRK11623 311 TRIHNDMRVNPAFLFAAMFWYPLLEHAQKIAQESGLA-YYDAFALAMNDVLDEACRSLAIPKRLTTL 376 (472)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHHHHHHhhheeCchhhHHH
Confidence 999999998764 7887777666655544455 368899988884 6788999999998876
No 2
>TIGR01942 pcnB poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).
Probab=100.00 E-value=6.9e-58 Score=453.95 Aligned_cols=316 Identities=27% Similarity=0.417 Sum_probs=253.1
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccccccccc--CCCCCchHhhH
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFE--RPIGCDEKDFI 78 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~~~~--~~~~~~~eDl~ 78 (356)
|||++||||||+|+|+|+|++++|+++.++|++|++++|.+++..|||+|||++.... ....+... ...+++++|+.
T Consensus 43 LLG~~pkD~DIat~a~peei~~lf~~~~~iG~rf~~~~v~~~~~~iEvatfR~~~~~~-~~~~g~~~~d~~~gtieeDl~ 121 (410)
T TIGR01942 43 LLGIEPKDFDVVTSATPEEVRKLFRNSRIVGRRFRLVHVSFGRQIIEVATFRSGHKSS-VNAEGRILKDNVYGTLEEDAW 121 (410)
T ss_pred HcCCCCCCEEEEcCCCHHHHHHHhhhCeecCCCCCEEEEEECCEEEEEecccccccCC-CCCCCCcccccccCCHHHHhh
Confidence 6899999999999999999999999999999999999999999999999999864211 11111111 22478899995
Q ss_pred HhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHHHHHHHH
Q 018413 79 RWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKH 158 (356)
Q Consensus 79 r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T~~~i~~ 158 (356)
||||||||||||+.++.|+|||||++||++|+||+||+|..+|.|||+|||||+|||++|||+|+++|.++|++
T Consensus 122 ------RRDFTINALayd~~~~~IiD~~gG~~DL~~~~LR~igdp~~rf~EDPlRiLRAvRFaa~LgF~Ie~~T~~~I~~ 195 (410)
T TIGR01942 122 ------RRDFTVNALYYDPSREVIIDYVGGMEDLKNRRLRLIGDPRSRYQEDPVRMLRALRFSVKLEFTIDESTARPIRE 195 (410)
T ss_pred ------cCCchhhheeecCCCCeeeCCCCcHHHHHCCceeecCChhhcccccHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHhHhhcCCccCchhHHHHHHHHHH-HHhhhCCC
Q 018413 159 LSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLFSN-LDKLLAPD 237 (356)
Q Consensus 159 ~~~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~~~~~~~~~~~~~~~~~l~~~l~~-ld~~~~~~ 237 (356)
++++|..+|++||++|+.|+|.++++..+++.|.++|++..+||++...+..... ....++..++.+ +|.+++.+
T Consensus 196 ~a~~L~~vs~eRI~~El~Kll~~~~~~~~l~~L~~~gll~~lfPel~~~l~~~~~----~~~~~~~~~l~~~~d~r~~~~ 271 (410)
T TIGR01942 196 SAPLLKGIPPARLFEEILKLLFSGRSAALFRMLCGYQLLEPLFPSVAYALRESPK----FESAFTVQALVNDTDFRVKRD 271 (410)
T ss_pred HHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhHHHHHhcCCc----hHHHHHHHHHHhhhHHHHhCC
Confidence 9999999999999999999999999999999999999999999999866542211 123466677888 99999999
Q ss_pred CCCCcc------hHHHHHHHHHHHhcCCCChhHHHHHHHHHhcc-hhHHHHHHHhhhhhccccchh----hhhcCCCCcc
Q 018413 238 RPCHSS------LWIAILAFHKALSDQPRDPLVVAVFSLAVYNG-GDMLEAVKIARRINKSHDESF----CELLEPRDLD 306 (356)
Q Consensus 238 ~~~~~~------~W~~~la~~~~l~~~~~~~~~~~~~~~a~~~~-~~~~~~v~~~~r~~~~~~~~~----~~~~~~~~~~ 306 (356)
+++++. +|..+...+.....+ +.+ ...++..|+.+. .++.+.++||||++.+. ..+ +.+-..++-.
T Consensus 272 ~~v~p~fl~a~ll~~~~~~~~~~~~~~-~~~-~~~a~~~a~~~~l~~~~~~~~ip~r~~~~~-r~iw~~q~r~~~~~g~~ 348 (410)
T TIGR01942 272 KPVTPAFLYAALLWPGLVFRVADAPDQ-GVM-PYPAVFDAIRDFVEEQCAPISIPKRFSIPT-REIWQMQLRLERRSGMR 348 (410)
T ss_pred CCCCHHHHHHHHhHHHHHHHHHHHHhC-CCC-hHHHHHHHHHHHHHHHhhhccCchhhhHHH-HHHHHhhhhhccCCCCC
Confidence 999875 566666655554444 233 357888888884 77889999999998762 222 2222222222
Q ss_pred HH--------HHHHHHHHHHHHHHHHhccccc
Q 018413 307 FE--------ALKHEVMDFAESSKGALSKMTD 330 (356)
Q Consensus 307 ~~--------~~~~~~~~l~~~v~~~~~~~~~ 330 (356)
.. ..+-+.+.+++........+.+
T Consensus 349 ~~~~~~~~~fraa~dfl~lr~~~~~~~~~l~~ 380 (410)
T TIGR01942 349 ARKLLGHARFRAAYDLLLLREVCGRENAVLGE 380 (410)
T ss_pred hHHHhcCccHHHHHHHHHHHHHhcccccHHHH
Confidence 21 4455566666666555444444
No 3
>KOG2159 consensus tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-55 Score=426.45 Aligned_cols=349 Identities=42% Similarity=0.592 Sum_probs=292.3
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhccCcc-cccccceEEEEeCCEEE--------EEeccccccccccccccccccCCCC
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQCEI-VGKRFPICHVHFENTIV--------EVSSFSTSGRRFSRDFKYEFERPIG 71 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~~~~-vg~~f~~~~v~~~g~~i--------Ev~tfr~~~~~~~~~~~~~~~~~~~ 71 (356)
|||++|+|+||+|+|.+.|+++.|.++.+ +|++++.|||..|.... +++++|-+....+.+.+.+...|
T Consensus 42 LLg~~p~DiDiatta~~g~~~e~f~~~~~~~~~~~~~~h~~~np~~skhletat~~i~~~~iD~v~lr~~~y~e~~~~-- 119 (416)
T KOG2159|consen 42 LLGREPKDIDIATTAMSGQMKEMFQSAQIRVGKKFPICHVIMGPIKSKHLETATFRITTLRIDFVNLRREAYTETSIP-- 119 (416)
T ss_pred HcCCCCcccceeeccccHHHHHHHHHHHHhhcccCCcceeecCCcceeeecceeeeeeccccceeecCcccccccCCC--
Confidence 69999999999999999999999999876 99999999988665432 33333322221111111111112
Q ss_pred CchHhhHHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCC---
Q 018413 72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRF--- 148 (356)
Q Consensus 72 ~~~eDl~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I--- 148 (356)
...|-.+|+||.|||||||+++||++++.|+||+||++||++++||+|++|.++|.|||+||||++|||+|+||+|
T Consensus 120 -~~~dgt~~~nalRRD~TIN~Lffn~~~~~VeDytgG~eDL~~~kvrt~~~A~~tf~eDpLRILR~iRFaaRlgftid~~ 198 (416)
T KOG2159|consen 120 -YVTDGTRDENALRRDFTINSLFFNPFDGTVEDYTGGLEDLKNKKVRTVLHAKQTFLEDPLRILRGIRFAARLGFTIDEE 198 (416)
T ss_pred -CCCcCcchhhhhhhccchhhhhccCCCCceeeccccHhHHhcCeEEeeccccceeccchHHHHHHHHHHHhhcCccCcc
Confidence 2455667788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhHhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCchhhchhhHHhHhhcCCccCchhHHHHHHHH
Q 018413 149 SRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWK-FGLLEVLLPIQAAYLVKHGFRRRDKRSNLLLSLF 227 (356)
Q Consensus 149 ~~~T~~~i~~~~~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~-~GlL~~l~P~~~~~~~~~~~~~~~~~~~~l~~~l 227 (356)
+.+|..++++++.+++++|+|||+.|+.|||.++++..+|++|++ .|+...++|..+.+..++.+...+..++.++..+
T Consensus 199 ~~e~~~~~k~~~~~~~kIS~ERI~~Ei~kmL~g~~~~~~L~ll~~~~~~~~i~lp~~~s~~~f~~~~~~~~~s~~~~sl~ 278 (416)
T KOG2159|consen 199 SKETLEAIKENVALLAKISRERIGVEINKMLVGNSAEASLRLLWRLFGFEYIFLPIEASLEEFQGFNRRDGFSNEPLSLL 278 (416)
T ss_pred cHHHHhhHHHHHHHhccccHHHHHHHHHHHHcCCcHHHHHHHHHHhcCceEEeccchhhhhhccccccccccchhHHHHH
Confidence 778888999999999999999999999999999999999999999 8888888999888876666655555556566888
Q ss_pred HHHHhhhCCCCCCCcchHHHHHHHHHHHhcCCCChhHHHHHHHHHhcchhHHHHHHHhhhhhccccchhhhhcCCCCc--
Q 018413 228 SNLDKLLAPDRPCHSSLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDL-- 305 (356)
Q Consensus 228 ~~ld~~~~~~~~~~~~~W~~~la~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~-- 305 (356)
.++++...++.+++..+|+..+++|.++..+++.+.+.+.++.++... .+.+.+++++..+|...+.++.++..-
T Consensus 279 ~~l~~~~~~~~~~~~~l~l~~~~~~~~~~~~~r~~~v~~~~~~~~~~~---~~~~~i~~~i~~~~~~~~~~l~~~~~~~~ 355 (416)
T KOG2159|consen 279 ANLDKSLAPDEPCHLRLKLSILELLKKFIDQPRFPTVPAVSSSAPLSK---LQDVEIPKKIEKDHDRLRQLLVSQEKNEL 355 (416)
T ss_pred hcccccccccchhhhhHHHHHHhhhhHhhccccccceeeeecccchhh---hhhhhcccccccchHHHHHHhcchHhhhh
Confidence 999999999999999999999999999999999988888888888863 788999999999987777776665532
Q ss_pred cHH-HHHHHHHHHHHHHHHHhcccccHHHHHHHhhcCCCCCCcceeecccC
Q 018413 306 DFE-ALKHEVMDFAESSKGALSKMTDEYFVSQAMAGYSRAPFSDLYHSASK 355 (356)
Q Consensus 306 ~~~-~~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 355 (356)
+.+ ..-..+-...+++++++.+.++......+|.+|+++|.++++|++.+
T Consensus 356 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~llr~l~~~w~~~~~~~~~ 406 (416)
T KOG2159|consen 356 DNETLLDWSVPDFPISINDLAIEGTSKGSIIGALLRYLQAPWSDSVFTSLK 406 (416)
T ss_pred HHHHHhhhccCchHHHHHHHHHhhcccchhHHHHHHhhhhhHHHHHhHHHH
Confidence 223 23334678899999999999998899999999999999999998764
No 4
>COG0617 PcnB tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.4e-50 Score=401.80 Aligned_cols=197 Identities=37% Similarity=0.558 Sum_probs=183.7
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccc-cccccccccccCCCCCchHhhHH
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGR-RFSRDFKYEFERPIGCDEKDFIR 79 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~-~~~~~~~~~~~~~~~~~~eDl~r 79 (356)
|||++|+|+||+|++.|+++.++|+++..+|++|||++|..+|..+||+|||++.+ ..+. .....+.+++++|+.
T Consensus 36 LLG~~~~D~Diat~~~p~~~~~~~~~~~~~G~~f~t~~v~~~~~~~ev~T~R~~~~~~~~~---~~~~~~~~tleeDl~- 111 (412)
T COG0617 36 LLGRPPKDVDIATNATPEEVKKLFRNTRPVGRKFGTVTVPFNGEIIEVTTFRKEGYGYNGR---PLPVVFPGTLEEDLK- 111 (412)
T ss_pred HcCCCCcceeeeCCCCCHHHHHHHhhhhhhhhhcCeEEeccCCEEEEEEEeecCCCCcCCC---cCCcCCCCCHHHHHH-
Confidence 69999999999999999999999998999999999999999889999999999874 2211 112345778899995
Q ss_pred hhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHHHHHHHHh
Q 018413 80 WRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHL 159 (356)
Q Consensus 80 ~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T~~~i~~~ 159 (356)
|||||||||||++.+++|+|||||+.||++|+||+|++|++||.|||+|||||+||+++|||.++++|..+|+..
T Consensus 112 -----RRDFTINAla~~~~~~~iiD~~gG~~DL~~~~lR~i~~~~~rf~EDplRiLRa~RFaa~l~f~i~~~t~~~i~~~ 186 (412)
T COG0617 112 -----RRDFTINALAYDPEDGEIIDPFGGLKDLENRVLRHIGDASERFREDPLRILRAARFAARLGFTIEPETEEAIRLM 186 (412)
T ss_pred -----HhcccHHhhccCCCCCeEEeCCCCHHHHhcCceeccCCHHHhcccchHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHH
Q 018413 160 SPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAA 206 (356)
Q Consensus 160 ~~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~ 206 (356)
...+..+|+||++.|+.|||.++++..+++.|.++|++..+||++..
T Consensus 187 ~~~~~~is~ERi~~El~KlL~~~~~~~~l~~l~~~g~l~~l~p~~~~ 233 (412)
T COG0617 187 APLLAKISRERLWDELKKLLLSPNPREALQLLREYGALKILFPELDK 233 (412)
T ss_pred HHHhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChhhcChhHHH
Confidence 99999999999999999999999999999999999999999999875
No 5
>TIGR02692 tRNA_CCA_actino tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase.
Probab=100.00 E-value=1.3e-47 Score=390.54 Aligned_cols=221 Identities=23% Similarity=0.338 Sum_probs=194.1
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhcc----CcccccccceEEEEeCCEEEEEeccccccccccccccccccCC-CCCchH
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQ----CEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERP-IGCDEK 75 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~----~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~~~~~~-~~~~~e 75 (356)
|||++|+|+||+|+|.|+++.+.|++ ...+|++||+++|..+|..+||++||++.+...+.. +... .+++++
T Consensus 41 llg~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~v~~~~~~~ei~~~r~e~~~~~~~~---~~v~~~~~i~~ 117 (466)
T TIGR02692 41 LLGRLGHDLDFTTDARPEETLAILRPWADAVWDTGIAFGTVGAEKDGQQIEITTFRSDSYDGTSRK---PEVTFGDTLEG 117 (466)
T ss_pred HcCCCCCCEEEEeCCCHHHHHHHHHHhhhhccccCcccceEEEEECCcEEEEEecccccCcCCCCC---CcccCCCCHHH
Confidence 68999999999999999999999973 457899999999999999999999999864332111 1111 246799
Q ss_pred hhHHhhhhcccccccccceecCCCC---eeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHH
Q 018413 76 DFIRWRNCLQRDFTINGLMFDPYAK---IIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRET 152 (356)
Q Consensus 76 Dl~r~~d~~rRDFTiNAla~~~~~~---~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T 152 (356)
||. |||||||||||++.++ .|+|||||++||++|+||+|++|..+|.|||+|||||+|||+++||.|+++|
T Consensus 118 Dl~------rRDFTiNA~a~~~~~~~~g~l~D~~~G~~Dl~~~~ir~v~~~~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T 191 (466)
T TIGR02692 118 DLI------RRDFTVNAMAVRIPADGSLEFHDPVGGLDDLLAKVLDTPATPEQSFGDDPLRMLRAARFVSQLGFEVAPRV 191 (466)
T ss_pred HHH------hccccHHHhhccccCCCCceeecCCCcHHHHhCCceEecCChHHhhhhChHHHHHHHHHHHHhCCCcCHHH
Confidence 995 9999999999998754 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHhH--hhcCCccCchhHHHHHHHHHHH
Q 018413 153 AHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL--VKHGFRRRDKRSNLLLSLFSNL 230 (356)
Q Consensus 153 ~~~i~~~~~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~~~--~~~~~~~~~~~~~~l~~~l~~l 230 (356)
.++|+++++.+..++.||++.||.++|.++++..+++.|+++|+|..+||++..+. +.+.+|++++.+|++ .++..+
T Consensus 192 ~~~i~~~~~~l~~i~~eRi~~E~~kil~~~~~~~~l~~l~~~glL~~~~Pe~~~~~~~~~~~~h~~~v~~Htl-~vl~~~ 270 (466)
T TIGR02692 192 RAAMTEMADQIERISAERVRVELDKLLLGDHPRAGIDLMVETGLADRVLPEIPALRLEIDEHHQHKDVYEHSL-TVLRQA 270 (466)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCcHHHHHHHHhhhhhhhcCchHHHHhcccccCCCCCcHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999998652 455778889998887 555544
Q ss_pred H
Q 018413 231 D 231 (356)
Q Consensus 231 d 231 (356)
.
T Consensus 271 ~ 271 (466)
T TIGR02692 271 I 271 (466)
T ss_pred H
Confidence 3
No 6
>PRK13299 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=2.3e-47 Score=380.71 Aligned_cols=191 Identities=33% Similarity=0.475 Sum_probs=175.5
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccccccCC-----CCCchH
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERP-----IGCDEK 75 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~~~~~~-----~~~~~e 75 (356)
|||++|+|+||+|++.|+++++.|+++..+|.+||++.|..+|..+||+|||++.... +.++| .+++++
T Consensus 34 LLg~~~~DiDi~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~~~~ei~t~R~e~~~~------d~~~p~~~~~~~~i~e 107 (394)
T PRK13299 34 LLGRPIHDVDIATSAYPEEVKAIFPRTVDVGIEHGTVLVLENGEEYEVTTFRTESEYV------DYRRPSEVTFVRSLEE 107 (394)
T ss_pred HcCCCCCCEEEecCCCHHHHHHHhhhhhhccccCCEEEEEECCEEEEEEeeccccCcc------CCCCCccccCCCCHHH
Confidence 6899999999999999999999999887899999999999999999999999974221 22222 247789
Q ss_pred hhHHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHHHHH
Q 018413 76 DFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHF 155 (356)
Q Consensus 76 Dl~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T~~~ 155 (356)
||. |||||||||||++.++ |+|||||++||++|+||++++|+.+|.|||+|||||+||+++|||+|+++|.++
T Consensus 108 Dl~------RRDFTINAma~~~~g~-liDpf~G~~DL~~~~iR~v~~~~~~f~eDplRiLRa~Rfaa~l~f~i~~~t~~~ 180 (394)
T PRK13299 108 DLK------RRDFTINAIAMDENGE-IIDLFDGLEDLKNRLIRAVGNAEERFQEDALRMMRAVRFASQLGFDLETETFEA 180 (394)
T ss_pred HHH------hccccHHHhhcCCCCC-EeeCCCCHHHHhCCceeecCCHHHhhccCHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 994 9999999999999754 789999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhH
Q 018413 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQA 205 (356)
Q Consensus 156 i~~~~~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~ 205 (356)
|+++++.+..+|+|||+.|+.|+|.++++..+++.|.++|++.. +|++.
T Consensus 181 i~~~~~~l~~vs~eRI~~El~kll~~~~~~~~l~~l~~~gll~~-~p~l~ 229 (394)
T PRK13299 181 MKTQAPLLEKISVERIFVEFEKLLLGPFWRKGLKLLIETGLYNY-LPGLK 229 (394)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHCChHHh-Ccccc
Confidence 99999999999999999999999999999999999999999998 89875
No 7
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=100.00 E-value=1.2e-44 Score=362.67 Aligned_cols=216 Identities=28% Similarity=0.358 Sum_probs=181.3
Q ss_pred CCCCCCCCeeEEe-CCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccc-cc-cCCCCCchHhh
Q 018413 1 MLNRIPKDFDIIT-SAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKY-EF-ERPIGCDEKDF 77 (356)
Q Consensus 1 LLg~~pkD~Di~t-~a~~~ei~~~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~-~~-~~~~~~~~eDl 77 (356)
|||++|+|+||+| .+.|+++.+. +...+|+.||++.+ .+..+|++++|++.+... ++.+ .. ..|..+++|||
T Consensus 14 Llg~~~~D~D~vv~~~~~~~~~~~--~~~~~g~~f~v~~~--~~~~~e~~~~r~er~~~~-g~~~~~~~~~~~~~l~eDl 88 (409)
T PRK10885 14 LLGLPVKDRDWVVVGATPEEMLAQ--GYQQVGKDFPVFLH--PKTHEEYALARTERKSGR-GYTGFTCYAAPDVTLEEDL 88 (409)
T ss_pred HcCCCCCCeeEEeeCChHHHHHhC--CCeecCceeEEEEe--CCceEEEEeeeeccccCC-CCCCceeccCCCCCHHHHH
Confidence 6899999999865 5789988764 44568999998754 345679999999865433 2322 21 34567889999
Q ss_pred HHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHh---CCCCCHHHHH
Q 018413 78 IRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAH 154 (356)
Q Consensus 78 ~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarl---gf~I~~~T~~ 154 (356)
. ||||||||||||..+ .|+|||||++||++|+||+|++ +|.|||+||||++|||+++ ||+|+++|..
T Consensus 89 ~------RRDfTiNA~a~~~~~-~liDp~~G~~Dl~~~~lr~v~~---~f~eDPlRiLRa~RFaarl~~lgf~i~~~T~~ 158 (409)
T PRK10885 89 I------RRDLTINAMAQDDDG-ELIDPYGGQRDLEARLLRHVSP---AFAEDPLRVLRVARFAARFAHLGFRIAPETLA 158 (409)
T ss_pred H------hccchhhhheeCCCC-CEecCCCCHHHHhCCceEeCCc---hhhhCHHHHHHHHHHHHHhccCCCCcCHHHHH
Confidence 5 999999999999764 5889999999999999999986 5999999999999999999 9999999999
Q ss_pred HHHHhhH--hhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHhH---hhcCCcc-CchhHHHHHHHHH
Q 018413 155 FVKHLSP--SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYL---VKHGFRR-RDKRSNLLLSLFS 228 (356)
Q Consensus 155 ~i~~~~~--~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~~~---~~~~~~~-~~~~~~~l~~~l~ 228 (356)
+|++++. .|..+++|||+.|+.|+|.++++..+++.|+++|+|..+||++..+. |.+.||. +++++|++ .++.
T Consensus 159 ~i~~~~~~~~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~l~~~~Q~~~~H~e~dv~~Htl-~~l~ 237 (409)
T PRK10885 159 LMREMVASGELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEIDALFGVPQPAKWHPEIDTGIHTL-MVLD 237 (409)
T ss_pred HHHHhhhhchhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHHHhcCCCCcCCCCCCcHHHHHH-HHHH
Confidence 9999887 89999999999999999999999999999999999999999999763 4456665 68888887 5555
Q ss_pred HHHh
Q 018413 229 NLDK 232 (356)
Q Consensus 229 ~ld~ 232 (356)
.+..
T Consensus 238 ~~~~ 241 (409)
T PRK10885 238 QAAK 241 (409)
T ss_pred HHHh
Confidence 5543
No 8
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=1.3e-44 Score=360.26 Aligned_cols=208 Identities=26% Similarity=0.307 Sum_probs=172.3
Q ss_pred CCCCCCCCeeEEeCC-CHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccc-cc-cCCCCCchHhh
Q 018413 1 MLNRIPKDFDIITSA-ELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKY-EF-ERPIGCDEKDF 77 (356)
Q Consensus 1 LLg~~pkD~Di~t~a-~~~ei~~~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~-~~-~~~~~~~~eDl 77 (356)
|||++|+|+|++|++ .|+++.+. +...+|+.||++.+ .+...|++++|++.+... ++.+ .+ ..|..+++|||
T Consensus 14 LLg~~~~D~D~vv~g~~~~~~~~~--~~~~vG~~f~v~l~--~~~~~e~a~aRter~~g~-g~~g~~~~~~~~~tleeDL 88 (417)
T PRK13298 14 LLNLPVKDKDWVVVGGTPKILLSI--NFQQVGKDFPVFLH--PETHEEYALARTERKSGV-GYTGFITDTSSDVTLEEDL 88 (417)
T ss_pred HcCCCCCCeeEEecCCCHHHHHHH--HHHHhCCeeEEEEe--CceeEEEEeecccccccC-CCCCcccccCCCCCHHHHH
Confidence 689999999998766 58887652 23358999999765 345679999999865432 2332 22 22456889999
Q ss_pred HHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHh---CCCCCHHHHH
Q 018413 78 IRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETAH 154 (356)
Q Consensus 78 ~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarl---gf~I~~~T~~ 154 (356)
. ||||||||||||+.++ |+|||||++||++|+||+|++ +|.|||+|||||+|||++| ||+|+++|.+
T Consensus 89 ~------RRDFTINAmA~~~~g~-liDp~~G~~DL~~r~lR~v~~---~F~EDPLRiLRa~RFaar~~~lgF~i~~~T~~ 158 (417)
T PRK13298 89 I------RRDLTINAIAQDENGN-YIDPFQGKKDIQLRLLRHVSE---SFIEDPLRVLRVARFAALLVHLGFKIAKETMI 158 (417)
T ss_pred H------hcccceeeeEECCCCC-EEeCCCcHHHHHCCcEecCCc---ccccCHHHHHHHHHHHHHhccCCCccCHHHHH
Confidence 5 9999999999999765 779999999999999999974 7999999999999999995 9999999999
Q ss_pred HHHHhh--HhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHhHh--hc---CCccCchhHHHH
Q 018413 155 FVKHLS--PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLV--KH---GFRRRDKRSNLL 223 (356)
Q Consensus 155 ~i~~~~--~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~~~~--~~---~~~~~~~~~~~l 223 (356)
+|++++ +.|..+|+|||+.|+.|+|.+++|..+++.|.++|+|..+||++..+.. ++ .+|+.++..|++
T Consensus 159 ~i~~~~~~~~l~~~s~ERI~~El~k~L~~~~p~~~~~~L~~~g~L~~~~PEl~~~~g~~q~~~~~~~~~d~~~htl 234 (417)
T PRK13298 159 LMCIMVKKHELLYLTPERIWNETEKALKTDNPHVYFQVLYECNALKFLFPEIDFLYEKPYFLNSFFKKFNLGNYIL 234 (417)
T ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcchHHHcCCCCCccccCCchhHHHHHH
Confidence 999998 7899999999999999999999999999999999999999999987642 21 244455566665
No 9
>PRK13297 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=2.9e-43 Score=344.14 Aligned_cols=192 Identities=26% Similarity=0.298 Sum_probs=164.0
Q ss_pred CCCCCCCCeeEEe-CCCHHHHHHHhccCcccccccceEEEEeCCEEEEEecccccccccccccccc--ccCCCCCchHhh
Q 018413 1 MLNRIPKDFDIIT-SAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYE--FERPIGCDEKDF 77 (356)
Q Consensus 1 LLg~~pkD~Di~t-~a~~~ei~~~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~~--~~~~~~~~~eDl 77 (356)
|||++|+|+|+++ .+.|+++.+. +...+|+.|+++.. .+..+|++++|++.+... ++.+. ...+..++++||
T Consensus 25 LLg~~~~D~D~vv~ga~pe~l~~~--~~~~vG~~f~v~l~--~~~~~e~a~aRterk~g~-g~~~f~~~~~~~~tLeeDL 99 (364)
T PRK13297 25 LLGLPAGDRDWVVVGATPEDMARR--GFIPVGGDFPVFLH--PRTKEEYALARTERKSGR-GYKGFTFYTGADVTLEQDL 99 (364)
T ss_pred HcCCCCCCeeeeccCChHHHHHhc--CceeeCCEEEEEEe--CCceEEEEEEEEeeccCC-CCceeEEeCCCCCCHHHHH
Confidence 6899999999865 5679999885 55678999996542 445679999999864332 23321 122345889999
Q ss_pred HHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhC-CCCCHHHHHHH
Q 018413 78 IRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLG-FRFSRETAHFV 156 (356)
Q Consensus 78 ~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlg-f~I~~~T~~~i 156 (356)
. ||||||||||||+.+ .|+|||||++||++|+||+|++ +|.|||+|||||+|||++|| |+|+++|.++|
T Consensus 100 ~------RRDFTINAmA~~~~g-~liDpfgG~~DL~~riLR~v~~---~F~EDPLRILRa~RFaarlg~F~i~~eT~~~~ 169 (364)
T PRK13297 100 Q------RRDLTVNAIARTPQG-ELVDPLDGVADVRARVLRHVGE---AFAEDPVRILRLGRFAARFGDFSIAPETMQLC 169 (364)
T ss_pred H------hccceeeeeEECCCC-CEEECCCCHHHHhCCCeeeCcc---ccccCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 5 999999999999875 5889999999999999999975 79999999999999999997 99999999999
Q ss_pred HHhhH--hhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHh
Q 018413 157 KHLSP--SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAY 207 (356)
Q Consensus 157 ~~~~~--~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~~ 207 (356)
++.+. .|..+++|||+.|+.|+|.+++|..+|+.|.++|+|..+||++...
T Consensus 170 ~~~~~~~~l~~l~~ERI~~El~k~L~~~~p~~~l~~L~~~g~L~~l~Pel~~~ 222 (364)
T PRK13297 170 RRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDD 222 (364)
T ss_pred HHHhhhcccccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHhCcccccc
Confidence 99875 6899999999999999999999999999999999999999998754
No 10
>PRK13296 tRNA CCA-pyrophosphorylase; Provisional
Probab=100.00 E-value=1.1e-40 Score=323.87 Aligned_cols=189 Identities=24% Similarity=0.333 Sum_probs=155.7
Q ss_pred CCCCCCCCeeEEeCCC-HHHHHH-HhccCcccccccceEEEEeCCEEEEEecccccccccccccc--ccccCCCCCchHh
Q 018413 1 MLNRIPKDFDIITSAE-LKEVVR-VFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFK--YEFERPIGCDEKD 76 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~-~~ei~~-~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~--~~~~~~~~~~~eD 76 (356)
|||++|+|+||++++. ++++.. .|. .+|+.|+++. .++..+||+++|++.+...+... .++. +.+++++|
T Consensus 14 LLgr~p~DiDivV~g~~~~~~l~~~~~---~vg~~f~V~~--~~~~~~Eiat~R~E~~~~~g~~~~~v~~~-~~~tieeD 87 (360)
T PRK13296 14 LLGITPKDKDWVVVGATEDEMLANGFI---KIAANFPVFI--HPQTKQEYALARSEKKTASGYHGFEVNFS-KYITLEDD 87 (360)
T ss_pred HcCCCCCCeeEEecCCcHHHHHHhhhh---hcCCceEEEE--ECCeeEEEeeccccccccCCCCCCeEeeC-CCCCHHHH
Confidence 6899999999987665 444432 342 4688888753 36678999999998654332211 1111 23478999
Q ss_pred hHHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHh---CCCCCHHHH
Q 018413 77 FIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL---GFRFSRETA 153 (356)
Q Consensus 77 l~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarl---gf~I~~~T~ 153 (356)
|. ||||||||||||+.+ .|+|||||++||++|+||+++ .+|.|||+|||||+||+++| ||+|+++|.
T Consensus 88 L~------RRDFTINAmA~d~~g-~liDpfgG~~DL~~kiLR~v~---~sF~EDPLRILRa~RFaarL~~~gF~ie~eT~ 157 (360)
T PRK13296 88 LK------RRDLTINSIAIDQNN-KVIDPFNGQADLQNRILRHTS---IAFIEDPLRVVRLARFKAQLSNFNFSIAQEML 157 (360)
T ss_pred HH------hcCcceeeeEECCCC-CEecCCCCHHHHHCCceecCc---cccccCHHHHHHHHHHHHHhccCCCCcCHHHH
Confidence 95 999999999999874 578999999999999999995 38999999999999999986 999999999
Q ss_pred HHHHHhh--HhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHh
Q 018413 154 HFVKHLS--PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAY 207 (356)
Q Consensus 154 ~~i~~~~--~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~~ 207 (356)
++|++++ +.|..+|+|||+.|+.|++. ++..+++.|.++|+|..+||++..+
T Consensus 158 ~~i~~~~~~~~L~~vs~ERI~~El~kiL~--~p~~~l~~L~~~glL~~lfPel~~~ 211 (360)
T PRK13296 158 ALIKELVKTGELNHLTRERLHIEFVKALN--NPKIFFTTLKELEALKIIFPNISCI 211 (360)
T ss_pred HHHHHhhhhhhhhcCCHHHHHHHHHHHHh--ChHHHHHHHHHcCCHHHhCcchHHH
Confidence 9999975 58999999999999999997 4678999999999999999999865
No 11
>PF01743 PolyA_pol: Poly A polymerase head domain; InterPro: IPR002646 This group includes nucleic acid independent RNA polymerases, such as polynucleotide adenylyltransferase (2.7.7.19 from EC), which adds the poly (A) tail to mRNA. This group also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA 2.7.7.25 from EC.; GO: 0003723 RNA binding, 0016779 nucleotidyltransferase activity, 0006396 RNA processing; PDB: 1VFG_A 3H38_A 3H3A_B 3H39_B 3H37_A 1MIY_A 1MIV_B 1MIW_B 1OU5_B 3AQN_A ....
Probab=99.93 E-value=1.9e-26 Score=196.18 Aligned_cols=111 Identities=31% Similarity=0.454 Sum_probs=85.4
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhccCc----ccccccceEEEEeCCEEEEEeccccccccccccccccccCCCCCchHh
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQCE----IVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD 76 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~~~----~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~~~~~~~~~~~eD 76 (356)
|||++|+|+||+|+++|+++++.|.+.. .+|++|+++++..++..+||++||++.+....... .......++++|
T Consensus 12 Llg~~~~DiDi~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~di~~~r~~~~~~~~~~~-~~~~~~~~i~~D 90 (126)
T PF01743_consen 12 LLGRPPKDIDIVTNADPEEFAKLLAKKLGGVFVVGKRFGTVRVVFGGGSIDIASFRGEFYIGDGRNP-DVVEFGPTIEED 90 (126)
T ss_dssp HHTS--SEEEEEESS-HHHHHHHHCTTCCEEEEEETTTTEEEEEETTCEEEEEE-ECE--SSSSS---CCCCCSSTHHHH
T ss_pred HcCCCCCCeEEEEeCCHHHHHHHHHhhcccccccccccceeeecCCCcccccccccccccccccccc-ccccccCCHHHH
Confidence 5899999999999999999999998753 34899999999999989999999987653322110 001112267888
Q ss_pred hHHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEE
Q 018413 77 FIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQ 118 (356)
Q Consensus 77 l~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir 118 (356)
| .|||||||||||++..+.|+|||||++||++|+||
T Consensus 91 l------~rRDFTiNAla~~~~~~~liDp~gG~~DL~~~~iR 126 (126)
T PF01743_consen 91 L------KRRDFTINALAYDLETGKLIDPFGGLEDLKNKIIR 126 (126)
T ss_dssp H------CTSSBGGGSEEEECTTTCEEESSSHHHHHHTTEE-
T ss_pred H------HhcCCeehheeEECCCCeEEcCCCCHHHHHcCCCC
Confidence 8 59999999999999999899999999999999997
No 12
>cd05398 NT_ClassII-CCAase Nucleotidyltransferase (NT) domain of ClassII CCA-adding enzymes. CCA-adding enzymes add the sequence [cytidine(C)-cytidine-adenosine (A)], one nucleotide at a time, onto the 3' end of tRNA, in a template-independent reaction. This Class II group is comprised mainly of eubacterial and eukaryotic enzymes and includes Bacillus stearothermophilus CCAase, Escherichia coli poly(A) polymerase I, human mitochondrial CCAase, and Saccharomyces cerevisiae CCAase (CCA1). CCA-adding enzymes have a single catalytic pocket, which recognizes both ATP and CTP substrates. Included in this subgroup are CC- and A-adding enzymes from various ancient species of bacteria such as Aquifex aeolicus; these enzymes collaborate to add CCA to tRNAs. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal io
Probab=99.91 E-value=3.2e-24 Score=185.47 Aligned_cols=105 Identities=29% Similarity=0.393 Sum_probs=84.8
Q ss_pred CCCCCCCCeeEEeCC-CHHHHHHHhcc--Cccc--ccccceEEEEeCCEEEEEeccccccccccccccccccCCCCCchH
Q 018413 1 MLNRIPKDFDIITSA-ELKEVVRVFSQ--CEIV--GKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEK 75 (356)
Q Consensus 1 LLg~~pkD~Di~t~a-~~~ei~~~f~~--~~~v--g~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~~~~~~~~~~~e 75 (356)
|||++|+|+||+|++ .++++.++++. ...+ |++|++++|..++..+||++||++.+.... ..+.....++++
T Consensus 30 Llg~~~~DiDi~v~~~~~~~~~~l~~~~~~~~v~~~~~f~t~~v~~~~~~~di~~~R~e~~~~~~---~~p~~~~~~~~~ 106 (139)
T cd05398 30 LLGRPPKDIDIATDADGPEFAEALFKKIGGRVVGLGEEFGTATVVINGLTIDVATLRTETYTDPG---RRPPVVGFTIEE 106 (139)
T ss_pred HcCCCCCCceEEEeCCCHHHHHHHHHhcCCcEEecCCcccEEEEEECCEEEEEcccccccccCCC---CCCcccCCCCHH
Confidence 689999999999999 77878887752 3334 569999999999999999999998754321 112222456788
Q ss_pred hhHHhhhhcccccccccceecCCCCeeecCcCcHHHHhC
Q 018413 76 DFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRK 114 (356)
Q Consensus 76 Dl~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~ 114 (356)
|| .|||||||||||++.++.|+|||||++||++
T Consensus 107 Dl------~RRDFTINAmA~~~~~~~liDp~~G~~DL~~ 139 (139)
T cd05398 107 DL------LRRDFTINAMAYDLDDGELIDPFGGLKDLEN 139 (139)
T ss_pred HH------hhcCcchhheEecCCCCEEEeCCCCHHHHhC
Confidence 88 5999999999999987889999999999985
No 13
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.66 E-value=3.5e-16 Score=168.62 Aligned_cols=119 Identities=19% Similarity=0.134 Sum_probs=104.6
Q ss_pred HhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHHHHHHHHhhHhhcCCCHHHHHHHHHHHHhCCCH-HHHHHH
Q 018413 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSA-EASLRL 190 (356)
Q Consensus 112 L~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T~~~i~~~~~~L~~vs~eRi~~El~klL~~~~~-~~~l~~ 190 (356)
+.+|.|.+..+ ..|.+||+||||++|||+++||.|+++|.++|+++++.+..++.||++.||.|+|.++++ ..+++.
T Consensus 313 ~~~~~l~~~~~--~~~~~DplRiLRa~rfaa~lgf~I~~~T~~~i~~~~~~l~~~~~eri~~ef~kiL~~~~~~~~~l~~ 390 (774)
T PRK03381 313 EHAGEVVLARD--ARPARDPGLVLRVAAAAATTGLPIAAATLSRLAASAPPLPTPWPAEARDDLLVLLGAGPAAVAVIEA 390 (774)
T ss_pred EECCEEEeCCc--cccccCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCchHHHHHH
Confidence 45567766644 689999999999999999999999999999999999999999999999999999988755 579999
Q ss_pred HHHcCCchhhchhhHHh---HhhcCCccCchhHHHHHHHHHHHHhh
Q 018413 191 LWKFGLLEVLLPIQAAY---LVKHGFRRRDKRSNLLLSLFSNLDKL 233 (356)
Q Consensus 191 L~~~GlL~~l~P~~~~~---~~~~~~~~~~~~~~~l~~~l~~ld~~ 233 (356)
|+++|+|..++|+++.+ .|++.||.|++++|++ .++.++..+
T Consensus 391 m~~~GvL~~~iPE~~~i~~~~Q~~~~H~ytVd~Htl-~~l~~~~~~ 435 (774)
T PRK03381 391 LDRTGLWGRLLPEWEAVRDLPPRDPVHRWTVDRHLV-ETAVRAAAL 435 (774)
T ss_pred HHHhCCHHHhchhHHHhhCCCCCCCCccChHHHHHH-HHHHHHHHH
Confidence 99999999999999976 4678899999999998 666666544
No 14
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.66 E-value=2.6e-16 Score=171.88 Aligned_cols=132 Identities=17% Similarity=0.181 Sum_probs=117.7
Q ss_pred eecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhC--CCCCHHHHHHHHHhhHhhcCC--CHHHHHHHHHH
Q 018413 102 IYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLG--FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNY 177 (356)
Q Consensus 102 i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlg--f~I~~~T~~~i~~~~~~L~~v--s~eRi~~El~k 177 (356)
.+||++|..|+++|.|+++++ ..|.+||+||||+|||+++.+ ..|+++|.++|+++.+.+... +.+|+..||.+
T Consensus 339 ~~~~~~~~~~l~~~~i~~~~~--~~f~~dP~riLr~f~~~a~~~~i~~i~~~t~~~i~~~~~~i~~~~~~~~~~~~~f~~ 416 (895)
T PRK00275 339 TIQPLNSRFQLRDGYIEATHP--NVFKRTPFALLEIFVLMAQHPEIKGVRADTIRLLREHRHLIDDAFRNDIRNTSLFIE 416 (895)
T ss_pred cccccCCCeEEECCEEEecCh--hhhhcCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhcCchhccCHHHHHHHHH
Confidence 469999999999999999987 569999999999999999954 467799999999999999887 77899999999
Q ss_pred HHhCCC-HHHHHHHHHHcCCchhhchhhHHh---HhhcCCccCchhHHHHHHHHHHHHhhhCC
Q 018413 178 MLAYGS-AEASLRLLWKFGLLEVLLPIQAAY---LVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236 (356)
Q Consensus 178 lL~~~~-~~~~l~~L~~~GlL~~l~P~~~~~---~~~~~~~~~~~~~~~l~~~l~~ld~~~~~ 236 (356)
||.+++ +..+|+.|+++|+|+.++|+++++ +|++.||.||+++|++ .++.+++.+..+
T Consensus 417 iL~~~~~~~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVdeHtl-~~v~~l~~l~~~ 478 (895)
T PRK00275 417 LFKCPIGIHRNLRRMNRYGILGRYLPEFGHIVGQMQHDLFHIYTVDAHTL-NLIKNLRKLRYP 478 (895)
T ss_pred HHcCCCchHHHHHHHHHcCCHHHhCchHhhEeeeccCcccccCcHHHHHH-HHHHHHHHhhcc
Confidence 999987 467899999999999999999977 5778899999999998 888888766443
No 15
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.65 E-value=7.1e-16 Score=163.33 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=103.0
Q ss_pred HhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHHHHHHHHhhHhhcCCCHHHHHHHHHHHHhCC-CHHHHHHH
Q 018413 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYG-SAEASLRL 190 (356)
Q Consensus 112 L~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T~~~i~~~~~~L~~vs~eRi~~El~klL~~~-~~~~~l~~ 190 (356)
+.+|.|++++++. + |||+||||+||||+++||.|+++|.++|+++ ..+.....+|+..||.++|.++ ++..+|+.
T Consensus 275 ~~~~~I~~~~~~~--~-eDPlRiLRafrfAa~~gf~I~~~Tl~~i~~~-~~L~~~~~er~~~ef~kiL~s~~~~~~~L~~ 350 (693)
T PRK00227 275 DANGTIALSRTPD--L-DDPALPLRVAAAAARTGLPVSESVWKRLEEC-PELPEPWPASAAGDFFRLLSSPVNSRRVIKQ 350 (693)
T ss_pred EECCEEEeCCCCc--c-cCHHHHHHHHHHHHhcCCCcCHHHHHHHHhh-hhcchhhHHHHHHHHHHHHcCCCChHHHHHH
Confidence 5678999998864 4 8999999999999999999999999999987 6677778899999999999986 88999999
Q ss_pred HHHcCCchhhchhhHHh---HhhcCCccCchhHHHHHHHHHHHHhh
Q 018413 191 LWKFGLLEVLLPIQAAY---LVKHGFRRRDKRSNLLLSLFSNLDKL 233 (356)
Q Consensus 191 L~~~GlL~~l~P~~~~~---~~~~~~~~~~~~~~~l~~~l~~ld~~ 233 (356)
|+++|+|..+||++.++ +|++.||.|++++|++ .++.++...
T Consensus 351 M~~~GvL~~llPE~~~i~g~~Q~d~yH~ytVDeHTL-~~l~~~~~~ 395 (693)
T PRK00227 351 MDRHGLWERIVPEWDRIRGLMPREPSHIHTIDEHSL-NTVANCALE 395 (693)
T ss_pred HHHcCCHHHHhHHHHHHhCCCCCCCCCCCcHHHHHH-HHHHHHHHh
Confidence 99999999999999977 4678899999999998 666665443
No 16
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.64 E-value=5.7e-16 Score=168.79 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=108.3
Q ss_pred HhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHHHHHHHHhhHhhcCCCH--HHHHHHHHHHHhCC-CHHHHH
Q 018413 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILKLDR--GRLLMEMNYMLAYG-SAEASL 188 (356)
Q Consensus 112 L~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T~~~i~~~~~~L~~vs~--eRi~~El~klL~~~-~~~~~l 188 (356)
+.+|.|++.++ .+|.|||+||||+|||++++||.|+++|.++|+++...|..++. +|++.||.+||.++ ++..++
T Consensus 319 ~~~~~l~~~~~--~~f~eDPlriLR~~rfaa~~~~~i~~~T~~~i~~~~~~l~~~~~~~er~~~ef~~iL~~~~~~~~~l 396 (850)
T TIGR01693 319 EDGGELVLART--AVFERDPALLLRLFAIAAQRGLPIHPAALRQLTASLPLLPTPLREDPEARELFLELLTSGNGTVRAL 396 (850)
T ss_pred EECCEEEecCc--cchhhCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHcCCCchHHHH
Confidence 68899999865 79999999999999999999999999999999999999999877 99999999999876 578899
Q ss_pred HHHHHcCCchhhchhhHHh---HhhcCCccCchhHHHHHHHHHHHHhhh
Q 018413 189 RLLWKFGLLEVLLPIQAAY---LVKHGFRRRDKRSNLLLSLFSNLDKLL 234 (356)
Q Consensus 189 ~~L~~~GlL~~l~P~~~~~---~~~~~~~~~~~~~~~l~~~l~~ld~~~ 234 (356)
+.|+++|+|+.+||++..+ .|.+.||.+++++|++ .++.++..+.
T Consensus 397 ~~m~~~gvL~~~iPe~~~i~~~~Q~~~~H~~tVd~Htl-~~l~~~~~~~ 444 (850)
T TIGR01693 397 RAMNRAGVLGRFLPEWGRIVGQMQFDLFHVYTVDEHTL-RTVVHLAPFA 444 (850)
T ss_pred HHHHHhCCHHHhCchHhhheeccccCceeecchhHHHH-HHHHHHHHHh
Confidence 9999999999999999876 5678899999999997 7777776553
No 17
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.60 E-value=6.2e-15 Score=161.99 Aligned_cols=119 Identities=15% Similarity=0.271 Sum_probs=104.6
Q ss_pred HhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHHHHHHHHhhHhhcC-----CCHHHHHHHHHHHHhCCCHHH
Q 018413 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSPSILK-----LDRGRLLMEMNYMLAYGSAEA 186 (356)
Q Consensus 112 L~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T~~~i~~~~~~L~~-----vs~eRi~~El~klL~~~~~~~ 186 (356)
+.+|.|+++++ .+|.+||+||||+||||+++||.|+++|.++|+++...|.. .+.+|++.|+ ++..+++..
T Consensus 384 ~~~~~i~~~~~--~~f~edPlriLR~fr~aa~~~~~i~~~T~~~i~~~~~~i~~~~~~~~~~~r~f~ei--l~~~~~~~~ 459 (931)
T PRK05092 384 VDNGRINLADP--DVFERDPVNLIRLFHLADRHGLDIHPDAMRLVTRSLRLIDAALREDPEANRLFLDI--LTSRRNPER 459 (931)
T ss_pred EECCEEEecCh--hhhhhCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcChhhccCHHHHHHHHHH--HcCCCchHH
Confidence 67789999976 68999999999999999999999999999999999988776 5779999887 244457889
Q ss_pred HHHHHHHcCCchhhchhhHHh---HhhcCCccCchhHHHHHHHHHHHHhhhC
Q 018413 187 SLRLLWKFGLLEVLLPIQAAY---LVKHGFRRRDKRSNLLLSLFSNLDKLLA 235 (356)
Q Consensus 187 ~l~~L~~~GlL~~l~P~~~~~---~~~~~~~~~~~~~~~l~~~l~~ld~~~~ 235 (356)
+|+.|+++|+|+.++|+++.+ +|++.||.|++++|++ .++.++..+..
T Consensus 460 ~l~~m~~~GvL~~~iPef~~i~~~~Q~d~~H~ytVd~Htl-~~l~~l~~~~~ 510 (931)
T PRK05092 460 VLRRMNEAGVLGRFIPDFGRIVAMMQFNMYHHYTVDEHTI-RAIGVLAEIER 510 (931)
T ss_pred HHHHHHHhCChHHhcccHHhcccccccccceeccHhHHHH-HHHHHHHHHhc
Confidence 999999999999999999975 5788999999999998 77888876654
No 18
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.59 E-value=3.8e-15 Score=162.11 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=109.9
Q ss_pred HHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHh-C-CCCCHHHHHHHHHhhHhhcCC--CHHHHHHHHHHHHhCCCH-
Q 018413 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL-G-FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNYMLAYGSA- 184 (356)
Q Consensus 110 ~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarl-g-f~I~~~T~~~i~~~~~~L~~v--s~eRi~~El~klL~~~~~- 184 (356)
-.+.+|.|+++++ ..|.+||+||||+|||++++ | +.|++.|.++|+.+.+.+... +.+|+..||.+||..+++
T Consensus 327 f~~~~~~i~~~~~--~~f~~dP~riLr~fr~aa~~~~~~~i~~~T~~~i~~~~~~i~~~~~~~er~~~ef~~iL~~~~~~ 404 (856)
T PRK03059 327 FVEKQGMLEIASD--DLFERHPHAILEAFLLYQQTPGLKGLSARTLRALYNARDVMNAAFRRDPVNRALFMQILQQPRGI 404 (856)
T ss_pred eEEECCEEEecCc--hhhhcCHHHHHHHHHHHHhcCCccCcCHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHcCCCch
Confidence 4578999999976 56999999999999999999 5 699999999999999999887 779999999999999875
Q ss_pred HHHHHHHHHcCCchhhchhhHHh---HhhcCCccCchhHHHHHHHHHHHHhhhC
Q 018413 185 EASLRLLWKFGLLEVLLPIQAAY---LVKHGFRRRDKRSNLLLSLFSNLDKLLA 235 (356)
Q Consensus 185 ~~~l~~L~~~GlL~~l~P~~~~~---~~~~~~~~~~~~~~~l~~~l~~ld~~~~ 235 (356)
..+|+.|+++|+|..++|+++++ .|++.||.+++++|++ .++.+++.+..
T Consensus 405 ~~~l~~m~~~GlL~~~lPe~~~i~~~~Q~~~~H~ytVd~Htl-~~v~~l~~~~~ 457 (856)
T PRK03059 405 THALRLMNQTSVLGRYLPNFRRIVGQMQHDLFHVYTVDQHIL-MVLRNLRRFAM 457 (856)
T ss_pred HHHHHHHHHhCCHHHhCchHhheeeeecccccccCcHhHHHH-HHHHHHHHhhc
Confidence 68999999999999999999987 5778899999999998 77777766543
No 19
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.49 E-value=8.9e-13 Score=143.74 Aligned_cols=122 Identities=14% Similarity=0.159 Sum_probs=104.3
Q ss_pred HHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHh-CCCCCHHHHHHHHHhh----HhhcCCCHHHHHHHHHHHHhCCCH
Q 018413 110 EDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL-GFRFSRETAHFVKHLS----PSILKLDRGRLLMEMNYMLAYGSA 184 (356)
Q Consensus 110 ~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarl-gf~I~~~T~~~i~~~~----~~L~~vs~eRi~~El~klL~~~~~ 184 (356)
-.+.+|.|.+..+ ..|.+||+||||+|||++++ ||.|+++|.++|+++. ..+..++.+| .||.+||.++++
T Consensus 324 f~~~~~~i~~~~~--~~f~~dp~riLr~fr~~a~~~~~~i~~~t~~~i~~~~~~~~~~l~~~~~eR--~ef~kiL~~~~~ 399 (854)
T PRK01759 324 FYLINNAICLRNP--DCFEQQPESILDLFFYLTQYPQAEIHSTTLRQLRLALEQLQQPLCELPAAR--ERFLRLFNQPNA 399 (854)
T ss_pred eEEECCEEEecCh--hhhhhCHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHhccchhccCHHHH--HHHHHHHcCCCc
Confidence 3467788887754 68999999999999999999 6999999999887654 4555678887 899999998775
Q ss_pred -HHHHHHHHHcCCchhhchhhHHh---HhhcCCccCchhHHHHHHHHHHHHhhhCC
Q 018413 185 -EASLRLLWKFGLLEVLLPIQAAY---LVKHGFRRRDKRSNLLLSLFSNLDKLLAP 236 (356)
Q Consensus 185 -~~~l~~L~~~GlL~~l~P~~~~~---~~~~~~~~~~~~~~~l~~~l~~ld~~~~~ 236 (356)
..+|+.|+++|+|+.++|+++.+ +|++.||.|++++|++ .++.+++.+...
T Consensus 400 ~~~~l~~M~~~GvL~~~iPe~~~i~~~~Q~d~yH~ytVd~Htl-~~l~~l~~~~~~ 454 (854)
T PRK01759 400 IKRALVPMHQYGVLTAYLPQWKGIVGLMQFDLFHIYTVDEHTL-RVMLKLESFLDE 454 (854)
T ss_pred hHHHHHHHHHhCCHHHhChHHHheeeccCCcccccCcHHHHHH-HHHHHHHHHhcc
Confidence 68999999999999999999976 5788899999999998 888888776544
No 20
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=99.40 E-value=5.2e-13 Score=99.95 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHhhHhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHH
Q 018413 145 GFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAA 206 (356)
Q Consensus 145 gf~I~~~T~~~i~~~~~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~ 206 (356)
||+|+++|..+|+++++.|..+|+|||+.|+.|+|.++++..+++.|+++|++..+||++.+
T Consensus 1 gF~ie~~t~~ai~~~~~~L~~is~ERi~~El~kil~~~~~~~~~~~l~~~gll~~ifP~l~~ 62 (64)
T PF12627_consen 1 GFKIEPETEEAIKENAELLSKISKERIREELEKILSSPNPSRAFKLLDELGLLEYIFPELDA 62 (64)
T ss_dssp T-EE-HHHHHHHHHHGGGGGGS-HHHHHHHHHHHHTSTTHHHHHHHHHHTTCHHHHSTTHHT
T ss_pred CCccCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999864
No 21
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.40 E-value=1e-12 Score=143.80 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=104.3
Q ss_pred HHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhC--CCCCHHHHHHHHHhhHhhcCC--CHHHHHHHHHHHHhCCCHH-
Q 018413 111 DIRKAKVQTVIPASTSFQEDCARILRAIRIAARLG--FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNYMLAYGSAE- 185 (356)
Q Consensus 111 DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlg--f~I~~~T~~~i~~~~~~L~~v--s~eRi~~El~klL~~~~~~- 185 (356)
-+.+|.|+++++ ..|.+||+||||+|||+++.+ -.|+++|.++|+.+.+.+... ..+++..||.+||.++++.
T Consensus 349 ~~~~~~i~~~~~--~~f~~dp~~iLr~f~~aa~~~~i~~i~~~t~~~i~~~~~~i~~~~~~~~~~~~~f~~iL~~~~~~~ 426 (884)
T PRK05007 349 QLRGTLIDLRDE--TLFQRQPEAILRMFYLMARNSNITGIYSTTLRQLRHARRHLNQPLCEIPEARKLFMEILRHPGAVS 426 (884)
T ss_pred EEECCEEeecCh--hhhhhCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHcCCCchH
Confidence 367889999987 459999999999999999965 357799999999998888742 3456999999999998876
Q ss_pred HHHHHHHHcCCchhhchhhHHh---HhhcCCccCchhHHHHHHHHHHHHhhhC
Q 018413 186 ASLRLLWKFGLLEVLLPIQAAY---LVKHGFRRRDKRSNLLLSLFSNLDKLLA 235 (356)
Q Consensus 186 ~~l~~L~~~GlL~~l~P~~~~~---~~~~~~~~~~~~~~~l~~~l~~ld~~~~ 235 (356)
.+|+.|+++|+|+.++|++..+ +|++.||.|++++|++ .++.++..+..
T Consensus 427 ~~l~~m~~~GlL~~~iPe~~~i~~~~Q~d~~H~ytVd~Htl-~~l~~l~~~~~ 478 (884)
T PRK05007 427 RALLPMHRHSVLSAYMPQWSHIVGQMQFDLFHAYTVDEHTI-RVLLKLESFAD 478 (884)
T ss_pred HHHHHHHHhCCHHHhCchHhheeeccccCccccCcHhHHHH-HHHHHHHHHhc
Confidence 4999999999999999999976 5778899999999998 77787766543
No 22
>PHA01806 hypothetical protein
Probab=99.27 E-value=8.8e-12 Score=111.53 Aligned_cols=75 Identities=20% Similarity=0.142 Sum_probs=53.7
Q ss_pred CCCCCCCCeeEEe-CCCHHHHHHHhccC----cccccccceEE---------------------EEeCCEEEEEeccccc
Q 018413 1 MLNRIPKDFDIIT-SAELKEVVRVFSQC----EIVGKRFPICH---------------------VHFENTIVEVSSFSTS 54 (356)
Q Consensus 1 LLg~~pkD~Di~t-~a~~~ei~~~f~~~----~~vg~~f~~~~---------------------v~~~g~~iEv~tfr~~ 54 (356)
|||++|||+||+| .+.|+++.++..+. .....+.+.++ +..+|..+||+.+.++
T Consensus 49 Llgr~~kDiDivt~~~~pe~v~~L~~klG~k~V~~~~~~ggwr~~~~~~gd~~~~~~~~~l~g~~vl~g~tvD~A~~~g~ 128 (200)
T PHA01806 49 MHGAEPKDIDIALYGMDDRQAELLIGCILPKLVSRFLRDGGWSQEYHDGGDGGIFKGVVSLKGCRGLEGMDVDFNYYDTD 128 (200)
T ss_pred HcCCCCCceEEEccCCCHHHHHHHHHHhCCcccccccccceeeeeccccccccccccceeeeeeEEeCCeEEEeeeccCC
Confidence 5899999999999 47899888765421 12233344444 4567788888876543
Q ss_pred cccccccccccccCCCCCchHhhHHhhhhcccccccc--cceecCC
Q 018413 55 GRRFSRDFKYEFERPIGCDEKDFIRWRNCLQRDFTIN--GLMFDPY 98 (356)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~eDl~r~~d~~rRDFTiN--Ala~~~~ 98 (356)
++++||. ||||||| ||||++.
T Consensus 129 -----------------sleeDL~------rRDFTINq~AIA~~~~ 151 (200)
T PHA01806 129 -----------------SVGEVME------SFDYTINQVGIAYNWP 151 (200)
T ss_pred -----------------CHHHHHH------HcCCccchhhhcccCC
Confidence 4689994 9999999 8888764
No 23
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.24 E-value=1.9e-10 Score=125.63 Aligned_cols=121 Identities=13% Similarity=0.088 Sum_probs=104.8
Q ss_pred HhCCcEEecCCcccchhhcHHhHHHHHHHHHHhC--CCCCHHHHHHHHHhhHhhcCC--CHHHHHHHHHHHHhCCCHHHH
Q 018413 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLG--FRFSRETAHFVKHLSPSILKL--DRGRLLMEMNYMLAYGSAEAS 187 (356)
Q Consensus 112 L~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlg--f~I~~~T~~~i~~~~~~L~~v--s~eRi~~El~klL~~~~~~~~ 187 (356)
+.+|.|-+.. | ..|.+||.+|||+|..+++.+ ..|++.|.+.|+++...+..- ..+|++.||.+||.++++..+
T Consensus 339 ~~~~~i~~~~-~-~~f~~~P~~il~lf~~~~~~~~~~~i~~~t~r~l~~~~~~l~~~~~~~~ri~~ef~kiL~~~~~~~~ 416 (869)
T PRK04374 339 LRRGYLAADA-D-SWPDGDVLQVFALFAQWAAHREVRGLHSLTARALAEVLRDLPAYDVADATARERFMALLRGPRAVET 416 (869)
T ss_pred EECCEEeecC-c-ccchhCHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHcCCChhHH
Confidence 3455665543 3 689999999999999999999 899999999999988877653 678999999999999999999
Q ss_pred HHHHHHcCCchhhchhhHHh---HhhcCCccCchhHHHHHHHHHHHHhhhC
Q 018413 188 LRLLWKFGLLEVLLPIQAAY---LVKHGFRRRDKRSNLLLSLFSNLDKLLA 235 (356)
Q Consensus 188 l~~L~~~GlL~~l~P~~~~~---~~~~~~~~~~~~~~~l~~~l~~ld~~~~ 235 (356)
|+.|+++|+|+.++|+++++ +|++.||.|++++|++ .++.+++.+..
T Consensus 417 l~~m~~~GvL~~~lPE~~~i~~~~Q~d~yH~ytVd~Htl-~~l~~l~~~~~ 466 (869)
T PRK04374 417 LNRMARLGVLGQWIPAFASVSGRMQFDLFHVYTVDQHTL-MVLRNIALFAA 466 (869)
T ss_pred HHHHHHhCCHHHHhhhHHHHhccccccCccCCcHHHHHH-HHHHHHHHHhc
Confidence 99999999999999999977 5788999999999998 77787765543
No 24
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=7.8e-09 Score=109.51 Aligned_cols=120 Identities=18% Similarity=0.190 Sum_probs=96.9
Q ss_pred HhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCC-CHHHHHHHHHhhHhhcCCCH--HHHHHHHHHHHhCC-CHHHH
Q 018413 112 IRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRF-SRETAHFVKHLSPSILKLDR--GRLLMEMNYMLAYG-SAEAS 187 (356)
Q Consensus 112 L~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I-~~~T~~~i~~~~~~L~~vs~--eRi~~El~klL~~~-~~~~~ 187 (356)
..+|.|.+-++ .-|..||..|||.|-++++.|... +++|++++..+.+.|...=. +.-..-|..||..+ ++..+
T Consensus 336 ~~~g~I~l~~~--~~f~~dP~~ilrlf~~~~~~~~~~~~~~Tlr~L~~a~~~l~~~l~~~peA~~~Fl~il~~~~~~~r~ 413 (867)
T COG2844 336 ERNGRIELRDP--DLFERDPEAILRLFAIMAQTGLITGHPDTLRQLRRALRLLNQPLREDPEARRLFLSILRSPNAIRRT 413 (867)
T ss_pred eeCCEEEecCc--hhhhhChHHHHHHHHHHHhcCCcccchHHHHHHHHhccccCcccccCHHHHHHHHHHHhCCCcHHHH
Confidence 35678877655 579999999999999999999888 89999999988887765311 33344445556655 67899
Q ss_pred HHHHHHcCCchhhchhhHHh---HhhcCCccCchhHHHHHHHHHHHHhhh
Q 018413 188 LRLLWKFGLLEVLLPIQAAY---LVKHGFRRRDKRSNLLLSLFSNLDKLL 234 (356)
Q Consensus 188 l~~L~~~GlL~~l~P~~~~~---~~~~~~~~~~~~~~~l~~~l~~ld~~~ 234 (356)
|+.|+++|+|+.++|+|..+ ||++.||+||+++|++ .++.++....
T Consensus 414 l~~Mn~~GVLgrylPew~~Ivg~MQfdlfH~YTVDeH~l-r~v~~l~~~a 462 (867)
T COG2844 414 LRPMNRYGVLGRYLPEWGKIVGLMQFDLFHIYTVDEHTL-RVVLKLARFA 462 (867)
T ss_pred HHHHHHhhhHHHhcccHHhhhcccccCcceecchhHHHH-HHHHHHHHhh
Confidence 99999999999999999976 7999999999999998 6666665543
No 25
>PF12626 PolyA_pol_arg_C: Polymerase A arginine-rich C-terminus; PDB: 3AQN_A 3AQK_A 3AQM_B 3AQL_B.
Probab=68.12 E-value=7.8 Score=32.93 Aligned_cols=66 Identities=12% Similarity=0.127 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcc-hhHHHHHHHhhhhhccccchh----hhhcCCCCccHH--------HHHHHHHHHHHHHHHHhccccc
Q 018413 264 VVAVFSLAVYNG-GDMLEAVKIARRINKSHDESF----CELLEPRDLDFE--------ALKHEVMDFAESSKGALSKMTD 330 (356)
Q Consensus 264 ~~~~~~~a~~~~-~~~~~~v~~~~r~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~l~~~v~~~~~~~~~ 330 (356)
...++..|+... .+++..++||+||+.+. .-+ +.+....+-... ..+=+++.|++.+......+.+
T Consensus 7 ~~~A~~~A~~~vl~~q~~~vaIPrRfs~~m-ReIW~lQ~Rl~~r~gkr~~~ll~hprFRAAyDFL~LR~~~ge~~~~l~~ 85 (124)
T PF12626_consen 7 PQPALQQAMNEVLDEQVQRVAIPRRFSAPM-REIWQLQPRLEKRQGKRAFRLLEHPRFRAAYDFLLLRAEAGEELSELAE 85 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---HHHHHHH-HHHHHHHHHTTS--STTHHHHHHSTTHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHhccchHhHhHH-HHHHHHHHHhcccCCCCHHHHHhCchHHHHHHHHHHHHHhCCCcHHHHH
Confidence 357888888885 67888899999988762 222 233333333322 4555666666666666666655
No 26
>cd07749 NT_Pol-beta-like_1 Nucleotidyltransferase (NT) domain of an uncharacterized subgroup of the Pol beta-like NT superfamily. The Pol beta-like NT superfamily includes DNA polymerase beta and other family X DNA Polymerases, as well as Class I and Class II CCA-adding enzymes, RelA- and SpoT-like ppGpp synthetases and hydrolases, 2'5'-oligoadenylate (2-5A)synthetases, Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), poly(A) polymerases, terminal uridylyl transferases, Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. Proteins belonging to this subgroup are uncharacterized. In the majority of the Pol beta-like superfamily NTs, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations essential for catalysis. These divalent metal ions are involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.
Probab=66.35 E-value=16 Score=32.44 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=29.6
Q ss_pred CCCCCeeEEeCC-CHHHHHHHhccCc----------ccccccceEEEEeCCEEEEEe
Q 018413 4 RIPKDFDIITSA-ELKEVVRVFSQCE----------IVGKRFPICHVHFENTIVEVS 49 (356)
Q Consensus 4 ~~pkD~Di~t~a-~~~ei~~~f~~~~----------~vg~~f~~~~v~~~g~~iEv~ 49 (356)
-.|+|+||-|+- +.+++.++|.... .+-+.|+ ...++|..+||.
T Consensus 35 ~~p~DIDI~~D~~d~e~i~~il~~~~~~~~~~~~~~~~ts~F~--e~~I~gv~Vdvm 89 (156)
T cd07749 35 VEPHDIDIQTDNEGAYEIERIFHEFVNTEVRFSESEGIRSHFG--ELQIDGIKVEIM 89 (156)
T ss_pred CCCCcceEEEchhhHHHHHHHHHHhccCCCccCCCCceeeeee--EEEECCEEEEEe
Confidence 479999999884 5788888876532 1112233 345688889987
No 27
>PF13735 tRNA_NucTran2_2: tRNA nucleotidyltransferase domain 2 putative; PDB: 1MIY_A 1MIV_B 1MIW_B.
Probab=45.52 E-value=1.1e+02 Score=25.96 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=51.8
Q ss_pred chHHHHHHHHHHHhcCCCChhHHHHHHHHHhcchhHHHHHHHhhhhhccccchhhhhcCCCCccH---HHHHHHHHHHHH
Q 018413 243 SLWIAILAFHKALSDQPRDPLVVAVFSLAVYNGGDMLEAVKIARRINKSHDESFCELLEPRDLDF---EALKHEVMDFAE 319 (356)
Q Consensus 243 ~~W~~~la~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~ 319 (356)
..|..++.+ +... +.....++..|+.+++..+.|...-+.... .....++. ...+.+....+.
T Consensus 8 ~~wa~l~~~---~~~~---~~~a~~~L~~lk~Sn~~i~~v~~l~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 73 (149)
T PF13735_consen 8 EAWALLLLL---LGLD---PEEAREILKRLKFSNKEIKRVLSLVELHMR--------LQSQPWSRRDLYRYGEELFEDAL 73 (149)
T ss_dssp HHHHHHHHH---TT------S-HHHHHHHTT--HHHHHHHHHHHHHHHH----------GGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---hccH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--------hccCCchHHHHHHHhHHHHHHHH
Confidence 357665544 3322 333568999999998877777653332222 11223333 378888999999
Q ss_pred HHHHHhcccccHHHHHHHhhcCCCCCCcce
Q 018413 320 SSKGALSKMTDEYFVSQAMAGYSRAPFSDL 349 (356)
Q Consensus 320 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 349 (356)
.+..+.+...+...+.+....-|-...++|
T Consensus 74 ~l~~a~~~~~~~~~~~~~~~~l~i~~~~~L 103 (149)
T PF13735_consen 74 RLAQALGKAENRERLKEIYDQLPIHSLKDL 103 (149)
T ss_dssp HHHHHHHS-HHHHHHHHHHTTSS-SSGGG-
T ss_pred HHHHHhcchhhHHHHHHHHHcCCCCCcccC
Confidence 999998877666666666555554445555
No 28
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.66 E-value=1.9e+02 Score=25.55 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=46.4
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhHhhcCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHcCCchhh
Q 018413 138 IRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYML---AYGSAEASLRLLWKFGLLEVL 200 (356)
Q Consensus 138 ~Rfaarlgf~I~~~T~~~i~~~~~~L~~vs~eRi~~El~klL---~~~~~~~~l~~L~~~GlL~~l 200 (356)
..+....|+++.+.-...+.-....=..++++.|+..+.+.. .-...++.|.+|.+.|++..+
T Consensus 14 ~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 14 EKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 344556799998887666555444434689999999998764 223567999999999999887
No 29
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=25.05 E-value=2.6e+02 Score=22.26 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=30.4
Q ss_pred CCCCCCeeEEeCCCH-----H----HHHHHhccCc-------ccccccceEEEEeC--CEEEEEe
Q 018413 3 NRIPKDFDIITSAEL-----K----EVVRVFSQCE-------IVGKRFPICHVHFE--NTIVEVS 49 (356)
Q Consensus 3 g~~pkD~Di~t~a~~-----~----ei~~~f~~~~-------~vg~~f~~~~v~~~--g~~iEv~ 49 (356)
+.+-.|+|++...+. . ++.+.+.+.. +.+.+.|++++..+ |..+||+
T Consensus 33 ~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~~ArVPiik~~~~~~~i~~Dis 97 (114)
T cd05402 33 GLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKSGEVVEVEPIINARVPIIKFVDKPTGIEVDIS 97 (114)
T ss_pred CCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhCCCceeeEEeccCCCCEEEEEEcCCCeEEEEE
Confidence 456789999866442 2 2233443322 45677888888887 8888887
No 30
>PF15507 DUF4649: Domain of unknown function (DUF4649)
Probab=24.30 E-value=1.9e+02 Score=22.36 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=32.0
Q ss_pred EeCCCHHHHHHHhccC-cccccccceEEEEeCCEEEEEe
Q 018413 12 ITSAELKEVVRVFSQC-EIVGKRFPICHVHFENTIVEVS 49 (356)
Q Consensus 12 ~t~a~~~ei~~~f~~~-~~vg~~f~~~~v~~~g~~iEv~ 49 (356)
++-.+++++...+.+| .-+-..+++..|..+|..++..
T Consensus 15 ~~fe~~~ef~~s~~~C~vtipD~~~V~svt~~G~~ldy~ 53 (72)
T PF15507_consen 15 QTFEDYNEFMRSQSGCIVTIPDYYPVTSVTYNGQDLDYQ 53 (72)
T ss_pred EEeCCHHHHHHHhccCcccCCCceEEEEEEECCEEeccc
Confidence 4557899999999999 5777889999999999888755
No 31
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=21.75 E-value=2.4e+02 Score=29.86 Aligned_cols=106 Identities=18% Similarity=0.297 Sum_probs=68.5
Q ss_pred CCCCCchHhhHHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCC
Q 018413 68 RPIGCDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFR 147 (356)
Q Consensus 68 ~~~~~~~eDl~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~ 147 (356)
+|--..++|. -|-|+--|||.--. . =|.+|+- .|+.-..++-+..+ ..=+|-.
T Consensus 70 np~iv~~~~~-------~~qfg~ea~avldr--~--fyl~glp-----------rp~vg~~~~~~~~i-----~~~~~~~ 122 (529)
T PRK06253 70 NPVIVDEQDI-------YKQFGPEAMAVLDR--C--FYLAGLP-----------RPNVGISDEKIEQI-----EEILGRD 122 (529)
T ss_pred CceeecHHHH-------HHhhCHHHHHHHHH--h--hhhcCCC-----------CCCCCcCHHHHHHH-----HHHhCCC
Confidence 3433447777 48888888875211 0 1334432 13333333333333 2347999
Q ss_pred CCHHHHHHHHHhhHhhcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHh
Q 018413 148 FSRETAHFVKHLSPSILK--LDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAY 207 (356)
Q Consensus 148 I~~~T~~~i~~~~~~L~~--vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~~ 207 (356)
++.++.+.+++-.+.-++ +.+..+-.|+-+.|.-.+. .-..+|+..||+|..+
T Consensus 123 ~~~~~~e~l~~~lh~ykkg~~~gddl~~e~~~~l~~~~~-------~~~~~l~~vfpe~k~l 177 (529)
T PRK06253 123 LSEEKIESLREVLHSYKKGEIDGDDLVLEISKALEVSDE-------MVLKILDEVFPEFKEL 177 (529)
T ss_pred CChhHHHHHHHHHHHhhcCCCccchhHHHHHHhcCCChH-------HHHHHHHHhChHhhhc
Confidence 999999999998886554 8999999999988865542 2344678889999876
No 32
>PF14091 DUF4269: Domain of unknown function (DUF4269)
Probab=21.58 E-value=2.4e+02 Score=24.92 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=25.7
Q ss_pred CCCCCCeeEEeCCC-HHHHH----HHhccCc--------ccccccceEEEEeCCEEEEEe
Q 018413 3 NRIPKDFDIITSAE-LKEVV----RVFSQCE--------IVGKRFPICHVHFENTIVEVS 49 (356)
Q Consensus 3 g~~pkD~Di~t~a~-~~ei~----~~f~~~~--------~vg~~f~~~~v~~~g~~iEv~ 49 (356)
..+..|+||++..+ ++.++ +.|++.. +-|..--++....+|..+||.
T Consensus 29 di~~SDLDIic~~~d~~~F~~~l~~~f~~~~~f~~~~~~i~~~~~~~~~F~~~~~~~EiF 88 (152)
T PF14091_consen 29 DIPGSDLDIICEVPDPEAFEQLLQSLFGQFEGFTIKEKTIRGEPSIVANFRYEGFPFEIF 88 (152)
T ss_pred CCCCCCccEEEEeCCHHHHHHHHHHHhccCCCceeeeceeCCceeEEEEEEECCceEEEe
Confidence 35678999998864 55554 4454331 112222234445566666665
No 33
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.33 E-value=2.9e+02 Score=23.78 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=44.9
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhhHhhcCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHcCCchhh
Q 018413 138 IRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYMLAY---GSAEASLRLLWKFGLLEVL 200 (356)
Q Consensus 138 ~Rfaarlgf~I~~~T~~~i~~~~~~L~~vs~eRi~~El~klL~~---~~~~~~l~~L~~~GlL~~l 200 (356)
.....+-|.++.+.=...++-....=..++++.|..++.+-.-. ...+.+|..|.+.|++..+
T Consensus 9 ~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~ 74 (145)
T COG0735 9 IERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRL 74 (145)
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEE
Confidence 33455678999888666665444333458999999999874211 2357899999999999886
Done!