Query 018413
Match_columns 356
No_of_seqs 339 out of 1802
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018413.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018413hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aql_A Poly(A) polymerase; tra 100.0 4.4E-52 1.5E-56 416.0 20.1 231 1-241 46-286 (415)
2 1miw_A TRNA CCA-adding enzyme; 100.0 6.2E-48 2.1E-52 385.1 24.9 192 1-206 33-229 (404)
3 3h38_A TRNA nucleotidyl transf 100.0 1.1E-46 3.6E-51 379.1 23.7 194 1-205 48-251 (441)
4 1ou5_A TRNA CCA-adding enzyme, 100.0 9.7E-47 3.3E-51 380.7 14.0 195 1-206 84-288 (448)
5 1vfg_A A-adding enzyme, poly A 100.0 5.3E-46 1.8E-50 369.6 19.0 195 1-206 24-227 (390)
6 1qgp_A Protein (double strande 25.7 16 0.00053 27.0 0.2 58 140-199 2-63 (77)
7 2fcl_A Hypothetical protein TM 20.6 1.2E+02 0.004 25.7 4.8 47 4-50 51-106 (169)
8 4ets_A Ferric uptake regulatio 18.2 1.3E+02 0.0044 25.0 4.5 65 137-201 20-89 (162)
9 4ekf_A Adenain; alpha and beta 16.3 59 0.002 28.6 1.8 16 92-107 57-74 (204)
10 1m1e_B ICAT; cell adhesion, cy 16.0 1.4E+02 0.0048 22.5 3.6 36 123-161 11-46 (81)
No 1
>3aql_A Poly(A) polymerase; transferase/RNA, ATP-binding, nucleotide-binding, RNA-bindin transferase, nucleotidyltransferase, ATP binding, A-phospho; 3.00A {Escherichia coli} PDB: 3aqn_A* 3aqk_A 3aqm_A
Probab=100.00 E-value=4.4e-52 Score=416.01 Aligned_cols=231 Identities=30% Similarity=0.509 Sum_probs=196.6
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccc--ccc-----ccccc--cCCCC
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRF--SRD-----FKYEF--ERPIG 71 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~--~~~-----~~~~~--~~~~~ 71 (356)
|||++|+|+||+|+|+|++++++|+++..+|++|++++|..++..+||+|||++.+.. ... ..+.. ....+
T Consensus 46 LLg~~~~D~Di~t~a~p~~~~~~f~~~~~~g~~f~~~~v~~~~~~~ev~t~R~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 125 (415)
T 3aql_A 46 LLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFG 125 (415)
T ss_dssp HHSSCCSCCEEEESSCHHHHHHHTTTSCCCCCSSSCCEEESSSCEEEEEECCC-----------------------CCCC
T ss_pred HcCCCCCCEEEEcCCCHHHHHHHhhhCeEecccCCEEEEEECCcEEEEeeecccccccccccccccccCCCcccccccCC
Confidence 5899999999999999999999999988999999999999999999999999875421 000 01111 12357
Q ss_pred CchHhhHHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHH
Q 018413 72 CDEKDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRE 151 (356)
Q Consensus 72 ~~~eDl~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~ 151 (356)
++++|+ .||||||||||||+.++.|+|||||++||++|+||++++|..+|.|||+|||||+||++++||.|+++
T Consensus 126 tl~eDl------~RRDFTINAla~~~~~~~l~D~~gG~~DL~~~~Ir~v~~p~~~F~eDPlRiLRa~Rfaarlgf~i~~~ 199 (415)
T 3aql_A 126 SIEEDA------QRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPE 199 (415)
T ss_dssp CHHHHH------TTSSBSGGGCEEETTTCCEECSSSHHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHTTCEECHH
T ss_pred CHHHHH------hcCCccceeEEEeCCCCeeeCCCCCHHHHhCCeEEecCChhhhhhhCHHHHHHHHHHHHHhCCCCCHH
Confidence 889999 49999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHHhHhh-cCCccCchhHHHHHHHHHHH
Q 018413 152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAAYLVK-HGFRRRDKRSNLLLSLFSNL 230 (356)
Q Consensus 152 T~~~i~~~~~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~~~~~-~~~~~~~~~~~~l~~~l~~l 230 (356)
|.++|+++++.|..+|.||++.||.|||.++++..+|+.|+++|+|..+||++..+..+ +.+|.+++++|++ .++
T Consensus 200 T~~ai~~~~~~l~~is~eRi~~E~~kiL~~~~~~~~l~~l~~~GlL~~~lPe~~~i~~~~q~~h~~~v~~h~L----~~~ 275 (415)
T 3aql_A 200 TAEPIPRLATLLNDIPPAHLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVL----KNT 275 (415)
T ss_dssp HHTHHHHHGGGGGGSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTCSTTTCHHHHTTCCSSSCCHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHhhhcCChHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhchhHHHHhccCCcchHHHHHHHHH----HHH
Confidence 99999999999999999999999999999999999999999999999999999987532 3356666665554 567
Q ss_pred HhhhCCCCCCC
Q 018413 231 DKLLAPDRPCH 241 (356)
Q Consensus 231 d~~~~~~~~~~ 241 (356)
++.+..+.+..
T Consensus 276 d~~i~~~~~~~ 286 (415)
T 3aql_A 276 DTRIHNDMRVN 286 (415)
T ss_dssp HHHHHTTCCCC
T ss_pred HHHHhcCCCCC
Confidence 77666555443
No 2
>1miw_A TRNA CCA-adding enzyme; tRNA nucleotidyltransferase, translation, transferase; HET: ATP; 3.00A {Geobacillus stearothermophilus} SCOP: a.173.1.1 d.218.1.4 PDB: 1miv_A* 1miy_A*
Probab=100.00 E-value=6.2e-48 Score=385.05 Aligned_cols=192 Identities=34% Similarity=0.490 Sum_probs=173.8
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccccccCCC-----CCchH
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPI-----GCDEK 75 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~~~~~~~-----~~~~e 75 (356)
|||++|+|+||+|++.|++++++|+++..+|++|||++|..+|..+||+|||++.+. .+.++|. +++++
T Consensus 33 lLg~~~~D~Di~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~~~~ev~t~R~e~~~------~~~~~p~~v~~~~~l~~ 106 (404)
T 1miw_A 33 LLGRPIGDVDIATSALPEDVMAIFPKTIDVGSKHGTVVVVHKGKAYEVTTFKTDGDY------EDYRRPESVTFVRSLEE 106 (404)
T ss_dssp HHTCCCCCCEEEESSCHHHHHHHCSSEEEEEGGGTEEEEEETTEEEEEEECEECC---------------CCEECSCHHH
T ss_pred HcCCCCCCEEEEeCCCHHHHHHHhhhhcccCcCCCeEEEEECCeEEEEeeecccCCC------CCCcCCcccccCCcHHH
Confidence 589999999999999999999999887789999999999999999999999997542 2334442 57799
Q ss_pred hhHHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHHHHH
Q 018413 76 DFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETAHF 155 (356)
Q Consensus 76 Dl~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T~~~ 155 (356)
|+. |||||||||||++. +.|+|||||++||++|+||++++|..+|.|||+|||||+||++|+||.|+++|.++
T Consensus 107 Dl~------RRDfTiNAla~~~~-g~l~D~~~G~~Dl~~~~ir~~~~p~~~f~eDPlRiLRa~Rfaa~lgf~i~~~T~~a 179 (404)
T 1miw_A 107 DLK------RRDFTMNAIAMDEY-GTIIDPFGGREAIRRRIIRTVGEAEKRFREDALRMMRAVRFVSELGFALAPDTEQA 179 (404)
T ss_dssp HHH------TSSBSGGGCEECTT-CCEECTTCHHHHHHHTEECBSSCHHHHHHHCTHHHHHHHHHHHHHCCEECHHHHHH
T ss_pred HHH------hCCCCcchheeCCC-CCEeCCCCCHHHHhCCeeeecCChHhhHHhhHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 995 99999999999984 55889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHH
Q 018413 156 VKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAA 206 (356)
Q Consensus 156 i~~~~~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~ 206 (356)
|+++++.|..+|.||++.||.|||.++++..+++.|+++|+|.. +|++..
T Consensus 180 i~~~~~~l~~is~eRi~~El~kiL~~~~~~~~l~~l~~~Gll~~-lPe~~~ 229 (404)
T 1miw_A 180 IVQNAPLLAHISVERMTMEMEKLLGGPFAARALPLLAETGLNAY-LPGLAG 229 (404)
T ss_dssp HHHHGGGGGGSCHHHHHHHHHHHHTSSSHHHHHHHHHHSTTTTS-STTCSS
T ss_pred HHHHHhhhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhh-Ccchhh
Confidence 99999999999999999999999999999999999999999998 599864
No 3
>3h38_A TRNA nucleotidyl transferase-related protein; transferase/RNA, nucleotide-binding, RNA-binding; 2.37A {Thermotoga maritima} PDB: 3h37_A 3h39_A* 3h3a_A*
Probab=100.00 E-value=1.1e-46 Score=379.13 Aligned_cols=194 Identities=22% Similarity=0.337 Sum_probs=170.2
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhcc----CcccccccceEEEEe-CCEEEEEeccccccccccccccccccCCCCCchH
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQ----CEIVGKRFPICHVHF-ENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEK 75 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~----~~~vg~~f~~~~v~~-~g~~iEv~tfr~~~~~~~~~~~~~~~~~~~~~~e 75 (356)
|||++|+|+||+|+++|+++.+.+.+ ...+|++|||++|.+ +|..+||+|||++.+...+. .+....+++++
T Consensus 48 LLg~~~~D~Di~t~~~~~~~~~~~~~~~~~~~~~g~~~gt~~v~~~~g~~~ev~t~R~e~~~~~~~---~p~V~~~~l~e 124 (441)
T 3h38_A 48 LLGIKNLDIDIVVEGNALEFAEYAKRFLPGKLVKHDKFMTASLFLKGGLRIDIATARLEYYESPAK---LPDVEMSTIKK 124 (441)
T ss_dssp HHTCCCCCEEEEESSCHHHHHHHHHTTSCEEEECCSSTTEEEEEETTSCEEEEEECCEECCSSSSS---CCEESCCCHHH
T ss_pred HCCCCCCCeeEEeCCCHHHHHHHHHHHcCCEeccCCcCcEEEEEEeCCeEEEEecccccccCCCCC---CCccCCCCHHH
Confidence 58999999999999999888776643 225799999999998 88999999999985432211 11112467899
Q ss_pred hhHHhhhhcccccccccceecCC---CCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHH
Q 018413 76 DFIRWRNCLQRDFTINGLMFDPY---AKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRET 152 (356)
Q Consensus 76 Dl~r~~d~~rRDFTiNAla~~~~---~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T 152 (356)
|+. |||||||||||++. .|.|+|||||++||++|+||+|++ .+|.|||+|||||+||++++||+|+++|
T Consensus 125 Dl~------RRDFTINAla~~~~~~~~g~liD~~gG~~DL~~~~iR~v~~--~~F~eDplRiLRa~Rfaa~lgf~i~~~t 196 (441)
T 3h38_A 125 DLY------RRDFTINAMAIKLNPKDFGLLIDFFGGYRDLKEGVIRVLHT--LSFVDDPTRILRAIRFEQRFDFRIEETT 196 (441)
T ss_dssp HHH------TSSBGGGSCEEECSGGGTTEEECSSSHHHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHTTCEECHHH
T ss_pred HHH------hccchhhhhhcccCCCCCCeEeCCCCCHHHHhCCEEEECCC--CChhhCHHHHHHHHHHHHHhCCCCChHH
Confidence 995 99999999999875 378999999999999999999987 4899999999999999999999999999
Q ss_pred HHHHHHhh--HhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhH
Q 018413 153 AHFVKHLS--PSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQA 205 (356)
Q Consensus 153 ~~~i~~~~--~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~ 205 (356)
..+|+++. +.+..+|+|||+.|+.|||.++++..+++.|+++|+|..+||++.
T Consensus 197 ~~~i~~~~~~~~l~~is~eRi~~El~kll~~~~~~~~l~~l~~~glL~~i~Pel~ 251 (441)
T 3h38_A 197 ERLLKQAVEEGYLERTTGPRLRQELEKILEEKNPLKSIRRMAQFDVIKHLFPKTY 251 (441)
T ss_dssp HHHHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCHHHHHHHHHHTTHHHHHSTTCC
T ss_pred HHHHHHHHhhchhccCCHHHHHHHHHHHHcCCCHHHHHHHHHHcCChHHhCcccc
Confidence 99999875 689999999999999999999999999999999999999999975
No 4
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase, translation; 3.40A {Homo sapiens} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=9.7e-47 Score=380.69 Aligned_cols=195 Identities=23% Similarity=0.336 Sum_probs=171.3
Q ss_pred CCCCCCCCeeEEeCCCHHHHHHHhccCc----c-cccccceEEEEeCCEEEEEeccccccccccccccccccCCCC-Cch
Q 018413 1 MLNRIPKDFDIITSAELKEVVRVFSQCE----I-VGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIG-CDE 74 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~~ei~~~f~~~~----~-vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~~~~~~~~-~~~ 74 (356)
|||++|+|+||+|+++|+++++.|+++. . +|++||+++|..+|..+||++||++.+..++.. ....+ +++
T Consensus 84 LLg~~~~D~Di~~~~~p~~~~~~~~~~g~~~~~~~g~~~gt~~v~~~~~~~ev~t~R~~~~~~~r~~----~v~~~~~l~ 159 (448)
T 1ou5_A 84 LNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHA----EVEFTTDWQ 159 (448)
T ss_dssp HHTSCCSSCEEEESSCHHHHHHHHTTTTCCBCCCCCTTCCCEEECTTTTCEEEEECCS----------------SSCCSS
T ss_pred HcCCCCCCEEEEeCCCHHHHHHHHHHcCCccccCcCcccceEEEEECCEEEEEEeecccccccCCCC----ccccCccHH
Confidence 5899999999999999999999998642 2 699999999999999999999998864322211 11223 468
Q ss_pred HhhHHhhhhcccccccccceecCCCCeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHh--CC-CCCHH
Q 018413 75 KDFIRWRNCLQRDFTINGLMFDPYAKIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARL--GF-RFSRE 151 (356)
Q Consensus 75 eDl~r~~d~~rRDFTiNAla~~~~~~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarl--gf-~I~~~ 151 (356)
+|| .|||||||||||++ ++.|+|||||++||++|+||+|++|+.+|.|||+|||||+||++|+ || .|+++
T Consensus 160 eDl------~RRDFTINAla~~~-~g~l~D~~gG~~DL~~~~IR~v~d~~~rF~EDPLRiLRa~RFaarl~~gf~~I~~~ 232 (448)
T 1ou5_A 160 KDA------ERRDLTINSMFLGF-DGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPE 232 (448)
T ss_dssp CCG------GGSSBGGGSCEECS-SCBEECSSSHHHHTTTTCCCBSSTTTTTSSSCTTHHHHHHHHHHHSCSSSSCCCHH
T ss_pred HHH------HHcCCChhheeECC-CCCEeCCCCCHHHHhCCeEEecCChHHhhhhCHHHHHHHHHHHHHcCcCCCCcCHH
Confidence 898 59999999999999 5678999999999999999999999999999999999999999999 96 99999
Q ss_pred HHHHHHHhhHhhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhh-chhhHH
Q 018413 152 TAHFVKHLSPSILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVL-LPIQAA 206 (356)
Q Consensus 152 T~~~i~~~~~~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l-~P~~~~ 206 (356)
|.++|+++++.|..+|.||++.||.|+|.++++..+|+.|+++|+|..+ ||++..
T Consensus 233 T~~ai~~~~~~L~~is~ERi~~El~kiL~~~~~~~~l~~L~~~GlL~~i~lPe~~~ 288 (448)
T 1ou5_A 233 TLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANAS 288 (448)
T ss_dssp HHHHHHHSCTTGGGSCSHHHHHHHHHHHTSTTHHHHHHHHHHTTCGGGGTCCCCSC
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHCCCceEecCcchhh
Confidence 9999999999999999999999999999999999999999999999999 999864
No 5
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=100.00 E-value=5.3e-46 Score=369.64 Aligned_cols=195 Identities=27% Similarity=0.367 Sum_probs=170.5
Q ss_pred CCCCCCCCeeEEeCCCH----HHHHHHhccCcccccccceEEEEeCCEEEEEeccccccccccccccccccCCCCCchHh
Q 018413 1 MLNRIPKDFDIITSAEL----KEVVRVFSQCEIVGKRFPICHVHFENTIVEVSSFSTSGRRFSRDFKYEFERPIGCDEKD 76 (356)
Q Consensus 1 LLg~~pkD~Di~t~a~~----~ei~~~f~~~~~vg~~f~~~~v~~~g~~iEv~tfr~~~~~~~~~~~~~~~~~~~~~~eD 76 (356)
|||++|+|+||+|++++ +++++.|+....+|++|||++|..+|..+||+|||++.+...+. .+....+++++|
T Consensus 24 llg~~~~D~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~~~~~~~e~~~~R~e~~~~~~~---~p~v~~~~l~~D 100 (390)
T 1vfg_A 24 LLGKEVWDVDFVVEGNAIELAKELARRHGVNVHPFPEFGTAHLKIGKLKLEFATARRETYPRPGA---YPKVEPASLKED 100 (390)
T ss_dssp HTTCCCSEEEEEESSCHHHHHHHHHHHHTCCCEEETTTTEEEEEETTEEEEEEECCSCC------------CCCCCHHHH
T ss_pred HcCCCCCCEEEEEeCChHHHHHHHHHHcCCceeecCCCcEEEEEECCEEEEEeccCcccCCCCCC---CCccCCCCHHHH
Confidence 68999999999999985 66788887666789999999999999999999999986432211 111223578999
Q ss_pred hHHhhhhcccccccccceecCCC---CeeecCcCcHHHHhCCcEEecCCcccchhhcHHhHHHHHHHHHHhCCCCCHHHH
Q 018413 77 FIRWRNCLQRDFTINGLMFDPYA---KIIYDYIGGIEDIRKAKVQTVIPASTSFQEDCARILRAIRIAARLGFRFSRETA 153 (356)
Q Consensus 77 l~r~~d~~rRDFTiNAla~~~~~---~~i~D~~gG~~DL~~~~ir~v~~~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T~ 153 (356)
+. |||||||||||+... |.|+|||||++||++|+||++++ .+|.|||+|||||+||++|+||.|+++|.
T Consensus 101 l~------RRDfTiNAla~~~~~~~~g~l~D~~~G~~DL~~~~ir~v~~--~~F~eDPlRiLRa~Rfaa~~gf~i~~~T~ 172 (390)
T 1vfg_A 101 LI------RRDFTINAMAISVNLEDYGTLIDYFGGLRDLKDKVIRVLHP--VSFIEDPVRILRALRFAGRLNFKLSRSTE 172 (390)
T ss_dssp HH------TSSBGGGSCEEECCGGGTTCEECSSCHHHHHHTTEECBSST--THHHHCTTHHHHHHHHHHHHTCEECHHHH
T ss_pred Hh------hCCCchhheeecccCCCCCeEEeCCCCHHHHhCCeeEeCCc--cchhhCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 95 999999999998752 57899999999999999999986 69999999999999999999999999999
Q ss_pred HHHHHhhH--hhcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchhhchhhHH
Q 018413 154 HFVKHLSP--SILKLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEVLLPIQAA 206 (356)
Q Consensus 154 ~~i~~~~~--~L~~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~l~P~~~~ 206 (356)
++|+++.. .+..+|.||++.|+.|+|.++++..+++.|+++|+|..+||++..
T Consensus 173 ~~i~~~~~~~~l~~~s~eRi~~El~kiL~~~~~~~~l~~l~~~glL~~~lPe~~~ 227 (390)
T 1vfg_A 173 KLLKQAVNLGLLKEAPRGRLINEIKLALREDRFLEILELYRKYRVLEEIIEGFQW 227 (390)
T ss_dssp HHHHHHHHTTGGGTSCHHHHHHHHHHHHHCSSHHHHHHHHHHTTCHHHHSTTCCC
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHcCCCHHHHHHHHHHcCCHHHHhHhhhh
Confidence 99999865 899999999999999999999999999999999999999999863
No 6
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.65 E-value=16 Score=27.00 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=35.6
Q ss_pred HHHHhC-CCCCHHHHHHHHHhhHhhc---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHcCCchh
Q 018413 140 IAARLG-FRFSRETAHFVKHLSPSIL---KLDRGRLLMEMNYMLAYGSAEASLRLLWKFGLLEV 199 (356)
Q Consensus 140 faarlg-f~I~~~T~~~i~~~~~~L~---~vs~eRi~~El~klL~~~~~~~~l~~L~~~GlL~~ 199 (356)
|+..|+ |.+.+++...|-....... .++...|..++. +........|..|.+.|++..
T Consensus 2 ~~~~~~~~~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg--vs~~tV~~~L~~L~~~G~I~~ 63 (77)
T 1qgp_A 2 LSSHFQELSIYQDQEQRILKFLEELGEGKATTAHDLSGKLG--TPKKEINRVLYSLAKKGKLQK 63 (77)
T ss_dssp CHHHHTCTHHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC--CCHHHHHHHHHHHHHHTSEEE
T ss_pred hhHhhcccCCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--cCHHHHHHHHHHHHHCCCEEe
Confidence 566777 8888777666655444444 456566655553 222234567777888887754
No 7
>2fcl_A Hypothetical protein TM1012; putative nucleotidyltransferase, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.20A {Thermotoga maritima} SCOP: d.218.1.11 PDB: 2ewr_A
Probab=20.62 E-value=1.2e+02 Score=25.71 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=26.8
Q ss_pred CCCCCeeEEeCC-CHHHHHHHhccCc--c---cccccc---eEEEEeCCEEEEEec
Q 018413 4 RIPKDFDIITSA-ELKEVVRVFSQCE--I---VGKRFP---ICHVHFENTIVEVSS 50 (356)
Q Consensus 4 ~~pkD~Di~t~a-~~~ei~~~f~~~~--~---vg~~f~---~~~v~~~g~~iEv~t 50 (356)
+.|+|+||.++. +.+.+.+.|.... . .+..+- ...+..++..||+.+
T Consensus 51 ~~~~DIDi~i~~~da~~~~~~L~~~g~~~~~~~~~~~~~~~f~~~~i~~v~VDlm~ 106 (169)
T 2fcl_A 51 VEVHDIDIQTDEEGAYEIERIFSEFVSXXVRFSSTEXICSHFGELIIDGIXVEIMG 106 (169)
T ss_dssp CCCCSEEEEECHHHHHHHHHHTGGGEEEEEEEEECSSEEEEEEEEEETTEEEEEEE
T ss_pred CCCCccEEEecccCHHHHHHHHHHHhhcccCCCccccccceeeEEeeCCEEEEeee
Confidence 679999999864 3556666665432 1 111121 122344778888873
No 8
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=18.24 E-value=1.3e+02 Score=25.01 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhhHhhcCCCHHHHHHHHHHH--HhC---CCHHHHHHHHHHcCCchhhc
Q 018413 137 AIRIAARLGFRFSRETAHFVKHLSPSILKLDRGRLLMEMNYM--LAY---GSAEASLRLLWKFGLLEVLL 201 (356)
Q Consensus 137 a~Rfaarlgf~I~~~T~~~i~~~~~~L~~vs~eRi~~El~kl--L~~---~~~~~~l~~L~~~GlL~~l~ 201 (356)
+-.+..+.|+++.+.=...+......=..++++.|+.++.+- ... ...++.|..|.+.|++..+-
T Consensus 20 ~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 20 FKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 344566779999887555444333222458999999999865 222 23478999999999998873
No 9
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=16.25 E-value=59 Score=28.59 Aligned_cols=16 Identities=19% Similarity=0.671 Sum_probs=13.2
Q ss_pred cceecCCCCe--eecCcC
Q 018413 92 GLMFDPYAKI--IYDYIG 107 (356)
Q Consensus 92 Ala~~~~~~~--i~D~~g 107 (356)
|||+||.+.. +.||||
T Consensus 57 A~Aw~P~s~~~YmFDPfG 74 (204)
T 4ekf_A 57 AFAWNPRSKTCYLFEPFG 74 (204)
T ss_dssp EEEEETTTTEEEEECTBT
T ss_pred EeEecCCcceEEEeCCCC
Confidence 6899998875 669998
No 10
>1m1e_B ICAT; cell adhesion, cytoskeleton, armadillo repeats, transciption factor, structural protein; 2.10A {Homo sapiens} SCOP: a.161.1.1 PDB: 1luj_B 1t08_B
Probab=16.00 E-value=1.4e+02 Score=22.48 Aligned_cols=36 Identities=14% Similarity=0.392 Sum_probs=31.1
Q ss_pred cccchhhcHHhHHHHHHHHHHhCCCCCHHHHHHHHHhhH
Q 018413 123 ASTSFQEDCARILRAIRIAARLGFRFSRETAHFVKHLSP 161 (356)
Q Consensus 123 ~~~~F~EDPlRiLRa~Rfaarlgf~I~~~T~~~i~~~~~ 161 (356)
+.+.|.+--+.||=|+| +||..++|+=...+..++.
T Consensus 11 s~e~y~~QkvEILtALk---KLGe~Ls~eE~~FL~~~~~ 46 (81)
T 1m1e_B 11 PEEMYIQQKVRVLLMLR---KMGSNLTASEEEFLRTYAG 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTCCCCHHHHHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHHH---HhcccCCHHHHHHHHHHhh
Confidence 45778888999999998 9999999999999988754
Done!