BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018414
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 522 bits (1344), Expect = e-148, Method: Compositional matrix adjust.
Identities = 247/280 (88%), Positives = 262/280 (93%)
Query: 55 SPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPN 114
S YDLN F FDPIKESIVSREMTRRYMTDMITYA+TD GAGSAGLS AYE+SKNPN
Sbjct: 4 SAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPN 63
Query: 115 IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS 174
+Q+AIIEQSVSPGGGAWLGGQLFSAM+VRKPAH+FLDE+G+ YDEQD YVV+KHAALFTS
Sbjct: 64 VQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTS 123
Query: 175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234
TIMSKLLARPNVKLFNAVAAEDLIVKG RVGGVVTNWALV+ NH TQSCMDPNVMEAK+V
Sbjct: 124 TIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIV 183
Query: 235 VSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV 294
VSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEV
Sbjct: 184 VSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEV 243
Query: 295 AEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 334
AEIDGAPRMGPTFGAMMISGQKA LALK+LG PNA+DGT
Sbjct: 244 AEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGT 283
>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|B Chain B, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|C Chain C, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|D Chain D, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|E Chain E, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|F Chain F, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|G Chain G, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|H Chain H, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|I Chain I, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|J Chain J, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|K Chain K, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|L Chain L, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|M Chain M, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|N Chain N, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|O Chain O, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|P Chain P, Thiazole Synthase From Neurospora Crassa
Length = 344
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 169/288 (58%), Positives = 209/288 (72%), Gaps = 20/288 (6%)
Query: 56 PPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPN 114
P + F F PI+ES VSR MTRRY D+ +A+TD GAGS GLS AY LS P+
Sbjct: 45 PTLGTDAFTFSPIRESTVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPD 104
Query: 115 IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTS 174
++I I+E V+PGGGAWLGGQLFSAMV+RKPA +FLDE+G+ Y+++ +YVV+KHAALFTS
Sbjct: 105 LRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHAALFTS 164
Query: 175 TIMSKLLARPNVKLFNAVAAEDLIVKGG-------------------RVGGVVTNWALVS 215
T++SK+L RPNVKLFNA EDLI + R+ GVVTNW LVS
Sbjct: 165 TVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVS 224
Query: 216 MNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDA 275
M+HD QS MDPN + A V++S+ GHDGPFGA VKRL S+ +E + GM+ LDM SAEDA
Sbjct: 225 MHHDDQSXMDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDA 284
Query: 276 IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 323
IV TRE+VPG+IV GME++EIDGA RMGPTFGAM +SG KAAH A++
Sbjct: 285 IVNNTREIVPGLIVGGMELSEIDGANRMGPTFGAMALSGVKAAHEAIR 332
>pdb|3FPZ|A Chain A, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
pdb|3FPZ|B Chain B, Saccharomyces Cerevisiae Thi4p Is A Suicide Thiamin
Thiazole Synthase
Length = 326
Score = 286 bits (733), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 154/291 (52%), Positives = 192/291 (65%), Gaps = 24/291 (8%)
Query: 59 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQI 117
D + FKF PI+ES VSR MT RY D+ +A +D GAGS+GLS AY ++KN P++++
Sbjct: 34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKV 93
Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
IIE SV+PGGG+WLGGQLFSAMV+RKPAH+FL EL I Y+++ +YVV+KHAALF ST++
Sbjct: 94 CIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVL 153
Query: 178 SKLLARPNVKLFNAVAAEDLIV-----KGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEA 231
SK+L PNVKLFNA EDL+ KG V GVVTNW LV+ H TQ MDPNV+E
Sbjct: 154 SKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCXMDPNVIEL 213
Query: 232 K---------------VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAI 276
V++S+ GHDGPFGA KR+ I +++ GMK LDMN AE +
Sbjct: 214 AGYKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDV 273
Query: 277 VRLTREV--VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL 325
V + V M GMEVAE+DG RMGPTFGAM +SG AA LK
Sbjct: 274 VIHSGAYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHF 324
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 25/84 (29%)
Query: 97 GAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG--------------------GQL 136
G G AGL A+EL K ++ ++E PGG W G
Sbjct: 18 GGGPAGLCSAFELQK-AGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHF 76
Query: 137 FSAMVVRKP-AHIFLD---ELGID 156
++ R P +HI LD ELG++
Sbjct: 77 YNVGATRIPQSHITLDYCRELGVE 100
>pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
Length = 576
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWAL 213
L+ + + L +PN+ +F A EDLIV+ RV G VT L
Sbjct: 129 LYRQAVRTALENQPNLMIFQQ-AVEDLIVENDRVVGAVTQMGL 170
>pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A
Highly-Conserved Trna Modifying Enzyme
Length = 651
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWAL 213
L+ + + L +PN+ +F A EDLIV+ RV G VT L
Sbjct: 125 LYRQAVRTALENQPNLMIFQQ-AVEDLIVENDRVVGAVTQMGL 166
>pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
Length = 649
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWAL 213
L+ + + L +PN+ +F A EDLIV+ RV G VT L
Sbjct: 123 LYRQAVRTALENQPNLMIFQQ-AVEDLIVENDRVVGAVTQMGL 164
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 17/78 (21%)
Query: 90 DTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW----------LGGQLFS- 138
D D GAG +GL+ A EL K + +A++E GG W +GGQ S
Sbjct: 7 DRDVVIVGAGPSGLTAAREL-KKAGLSVAVLEARDRVGGRTWTDTIDGAMLEIGGQWVSP 65
Query: 139 -AMVVRKPAHIFLDELGI 155
V+ + LDELG+
Sbjct: 66 DQTVLME----LLDELGL 79
>pdb|2A0I|A Chain A, F Factor Trai Relaxase Domain Bound To F Orit
Single-Stranded Dna
Length = 330
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG 245
V+ A+A+ ++ G + N + NHDT +P + VV + H+G +
Sbjct: 114 VRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQHNGEWK 173
Query: 246 ATGVKRLKSIGMIEEV 261
++ G IE V
Sbjct: 174 TLSSDKVGKTGFIENV 189
>pdb|1P4D|A Chain A, F Factor Trai Relaxase Domain
pdb|1P4D|B Chain B, F Factor Trai Relaxase Domain
pdb|1P4D|C Chain C, F Factor Trai Relaxase Domain
Length = 330
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG 245
V+ A+A+ ++ G + N + NHDT +P + VV + H+G +
Sbjct: 114 VRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQHNGEWK 173
Query: 246 ATGVKRLKSIGMIEEV 261
++ G IE V
Sbjct: 174 TLSSDKVGKTGFIENV 189
>pdb|2Q7T|A Chain A, Crystal Structure Of The F Plasmid Trai Relaxase Domain
With The Scissile Thymidine Base
pdb|2Q7T|B Chain B, Crystal Structure Of The F Plasmid Trai Relaxase Domain
With The Scissile Thymidine Base
pdb|2Q7U|A Chain A, Crystal Structure Of The F Plasmid Trai Relaxase Domain
With The Scissile Thymidine Base And Imidodiphosphate
pdb|2Q7U|B Chain B, Crystal Structure Of The F Plasmid Trai Relaxase Domain
With The Scissile Thymidine Base And Imidodiphosphate
Length = 301
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG 245
V+ A+A+ ++ G + N + NHDT +P + VV + H+G +
Sbjct: 114 VRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQHNGEWK 173
Query: 246 ATGVKRLKSIGMIEEV 261
++ G IE V
Sbjct: 174 TLSSDKVGKTGFIENV 189
>pdb|2DKH|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, In Complex With The Substrate
pdb|2DKI|A Chain A, Crystal Structure Of 3-Hydroxybenzoate Hydroxylase From
Comamonas Testosteroni, Under Pressure Of Xenon Gas (12
Atm)
Length = 639
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 89 ADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126
+ D G G AGL+ A +L+ P+I+ I+EQ P
Sbjct: 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGP 68
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 145 PAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRV 204
P IF D +G+DY+E +++ + A T T + +P KL +A+ A D + K +
Sbjct: 356 PLTIFCDLMGVDYEEMAHWLCHRKLATATETYI-----KPISKL-HAINARDALAK--HI 407
Query: 205 GGVVTNWALVSMN 217
+ NW + +N
Sbjct: 408 YANLFNWIVDHVN 420
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 145 PAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRV 204
P IF D +G+DY+E +++ + A T T + +P KL +A+ A D + K +
Sbjct: 356 PLTIFCDLMGVDYEEMAHWLCHRKLATATETYI-----KPISKL-HAINARDALAK--HI 407
Query: 205 GGVVTNWALVSMN 217
+ NW + +N
Sbjct: 408 YANLFNWIVDHVN 420
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 89 ADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVS 125
AD D GAG+AG A L+++P++ + ++E VS
Sbjct: 1 ADFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVS 37
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 92 DXXXXGAGSAGLSCAYELSKNPNIQIAIIE 121
D G G GL+ A L++NPNI + +IE
Sbjct: 21 DYIIAGGGLTGLTTAARLTENPNISVLVIE 50
>pdb|4GNV|A Chain A, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315 With Bound
N-Acetyl-D-Glucosamine
pdb|4GNV|B Chain B, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315 With Bound
N-Acetyl-D-Glucosamine
Length = 350
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
AI+EQ V+P WLG L + + PAH+ Y + D K A F+ +
Sbjct: 203 AILEQDVAPYD--WLGLSLAAVI----PAHVI-------YTQVD-----KRPAGFSRVWL 244
Query: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 210
+L R + A+ ++DL ++ R GG +T
Sbjct: 245 QDIL-RGKLGFTGAIFSDDLSMEAAREGGTLTQ 276
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 145 PAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRV 204
P IF D +G+DY+E +++ + A T T + +P KL +A+ A D + K +
Sbjct: 356 PLTIFCDLMGVDYEEMAHWLCHRKLATATETYI-----KPISKL-HAINARDALAK--HI 407
Query: 205 GGVVTNWALVSMNHDTQS 222
+ NW + +N S
Sbjct: 408 YANLFNWIVDHVNKALHS 425
>pdb|4G6C|A Chain A, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315
pdb|4G6C|B Chain B, Crystal Structure Of Beta-Hexosaminidase 1 From
Burkholderia Cenocepacia J2315
Length = 348
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 19/93 (20%)
Query: 118 AIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIM 177
AI+EQ V+P WLG L + + PAH+ Y + D K A F+ +
Sbjct: 201 AILEQDVAPYD--WLGLSLAAVI----PAHVI-------YTQVD-----KRPAGFSRVWL 242
Query: 178 SKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 210
+L R + A+ ++DL ++ R GG +T
Sbjct: 243 QDIL-RGKLGFTGAIFSDDLSMEAAREGGTLTQ 274
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 92 DXXXXGAGSAGLSCAYELSKNPNIQIAIIEQ 122
D G G GL+ A +L++NP I++ +IE+
Sbjct: 26 DYIIAGGGLTGLTVAAKLTENPKIKVLVIEK 56
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 92 DXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSV 124
D G G+AG + A L++NPN+ + I+E +
Sbjct: 8 DFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGI 40
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 97 GAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128
GAG AGLS AY L+ Q+ ++E S PGG
Sbjct: 40 GAGMAGLSAAYVLA-GAGHQVTVLEASERPGG 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,997,847
Number of Sequences: 62578
Number of extensions: 394692
Number of successful extensions: 1042
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 36
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)