Query 018414
Match_columns 356
No_of_seqs 513 out of 2970
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02661 Putative thiazole syn 100.0 2.1E-54 4.6E-59 405.7 23.5 350 3-355 5-356 (357)
2 KOG2960 Protein involved in th 100.0 1.4E-52 3E-57 358.4 17.9 322 1-336 1-328 (328)
3 COG1635 THI4 Ribulose 1,5-bisp 100.0 1.1E-43 2.3E-48 305.8 16.3 259 62-327 2-261 (262)
4 TIGR00292 thiazole biosynthesi 100.0 2.5E-38 5.4E-43 289.5 18.8 251 71-326 2-254 (254)
5 PRK04176 ribulose-1,5-biphosph 100.0 5E-37 1.1E-41 281.7 18.7 254 67-327 2-256 (257)
6 PF01946 Thi4: Thi4 family; PD 100.0 1.1E-36 2.3E-41 264.4 12.6 229 74-307 1-230 (230)
7 PF03486 HI0933_like: HI0933-l 99.9 4.3E-22 9.3E-27 193.7 16.0 211 91-326 1-257 (409)
8 COG2081 Predicted flavoprotein 99.9 9E-21 2E-25 178.2 18.0 205 90-320 3-247 (408)
9 TIGR00275 flavoprotein, HI0933 99.7 3.2E-15 7E-20 146.1 16.7 202 94-321 1-242 (400)
10 PLN00128 Succinate dehydrogena 99.6 1.8E-14 3.8E-19 148.1 18.6 146 89-245 49-253 (635)
11 PRK06452 sdhA succinate dehydr 99.6 1.6E-14 3.5E-19 147.1 16.6 145 89-244 4-200 (566)
12 PTZ00139 Succinate dehydrogena 99.6 1.7E-14 3.8E-19 148.0 16.7 146 89-245 28-232 (617)
13 PRK06175 L-aspartate oxidase; 99.6 2.3E-14 5E-19 141.5 16.1 141 90-243 4-190 (433)
14 PRK08958 sdhA succinate dehydr 99.6 3E-14 6.4E-19 145.6 16.6 144 90-244 7-208 (588)
15 PRK09078 sdhA succinate dehydr 99.6 2.4E-14 5.3E-19 146.6 16.0 145 89-244 11-214 (598)
16 PRK06481 fumarate reductase fl 99.6 4.9E-14 1.1E-18 141.9 16.7 142 90-243 61-252 (506)
17 PRK09231 fumarate reductase fl 99.6 5.7E-14 1.2E-18 143.5 17.0 146 90-244 4-198 (582)
18 PRK06069 sdhA succinate dehydr 99.6 2.9E-14 6.2E-19 145.8 14.6 146 89-244 4-202 (577)
19 PRK07573 sdhA succinate dehydr 99.6 8.4E-14 1.8E-18 143.5 17.2 145 89-244 34-234 (640)
20 PRK05945 sdhA succinate dehydr 99.6 6.2E-14 1.3E-18 143.2 16.0 145 90-244 3-199 (575)
21 PLN02815 L-aspartate oxidase 99.6 4.8E-14 1E-18 143.8 14.9 146 89-245 28-225 (594)
22 PRK07121 hypothetical protein; 99.6 9.6E-14 2.1E-18 139.4 16.8 142 89-243 19-240 (492)
23 PF00890 FAD_binding_2: FAD bi 99.6 7.3E-14 1.6E-18 137.3 15.2 141 92-243 1-204 (417)
24 TIGR01176 fum_red_Fp fumarate 99.5 1E-13 2.2E-18 141.4 16.3 146 90-244 3-197 (580)
25 PRK07803 sdhA succinate dehydr 99.5 1.3E-13 2.8E-18 141.9 16.8 145 89-243 7-214 (626)
26 PRK08626 fumarate reductase fl 99.5 1.1E-13 2.4E-18 142.9 16.2 146 89-245 4-223 (657)
27 TIGR00551 nadB L-aspartate oxi 99.5 1.2E-13 2.6E-18 138.6 16.0 142 90-244 2-191 (488)
28 PRK08274 tricarballylate dehyd 99.5 1.9E-13 4.1E-18 136.3 17.3 142 90-243 4-193 (466)
29 PRK07057 sdhA succinate dehydr 99.5 1.6E-13 3.4E-18 140.5 16.7 145 89-244 11-213 (591)
30 PRK07395 L-aspartate oxidase; 99.5 7.6E-14 1.6E-18 141.6 14.2 143 88-243 7-198 (553)
31 PRK07804 L-aspartate oxidase; 99.5 2.1E-13 4.6E-18 138.3 17.2 147 89-243 15-211 (541)
32 PRK06854 adenylylsulfate reduc 99.5 1.4E-13 3E-18 141.2 16.1 146 89-243 10-196 (608)
33 PRK12834 putative FAD-binding 99.5 1.7E-13 3.6E-18 139.4 15.8 150 90-244 4-229 (549)
34 PRK09077 L-aspartate oxidase; 99.5 2.9E-13 6.3E-18 137.2 16.1 146 88-244 6-209 (536)
35 TIGR01812 sdhA_frdA_Gneg succi 99.5 2.3E-13 5E-18 139.0 15.5 142 92-244 1-193 (566)
36 PRK06263 sdhA succinate dehydr 99.5 3.5E-13 7.6E-18 136.8 16.6 143 89-243 6-198 (543)
37 PRK08641 sdhA succinate dehydr 99.5 4.2E-13 9.1E-18 137.3 17.2 146 90-245 3-203 (589)
38 PRK10157 putative oxidoreducta 99.5 3.2E-13 6.9E-18 133.3 15.6 136 90-243 5-165 (428)
39 COG0029 NadB Aspartate oxidase 99.5 2.1E-13 4.6E-18 131.6 13.3 154 92-257 9-211 (518)
40 COG0644 FixC Dehydrogenases (f 99.5 2.1E-13 4.6E-18 133.3 13.5 140 90-245 3-155 (396)
41 PRK07512 L-aspartate oxidase; 99.5 3.3E-13 7.1E-18 136.0 14.3 141 89-243 8-198 (513)
42 PRK08275 putative oxidoreducta 99.5 6.8E-13 1.5E-17 135.0 16.3 146 89-244 8-202 (554)
43 PRK10015 oxidoreductase; Provi 99.5 3.4E-13 7.4E-18 133.1 13.5 139 90-245 5-167 (429)
44 PRK08205 sdhA succinate dehydr 99.5 5.9E-13 1.3E-17 136.2 15.1 143 90-244 5-208 (583)
45 PRK06185 hypothetical protein; 99.5 1.8E-12 4E-17 126.9 17.5 137 88-243 4-170 (407)
46 PRK08401 L-aspartate oxidase; 99.5 8.7E-13 1.9E-17 131.6 15.2 137 91-245 2-178 (466)
47 PTZ00306 NADH-dependent fumara 99.5 9.9E-13 2.1E-17 143.8 16.4 149 88-244 407-622 (1167)
48 TIGR02061 aprA adenosine phosp 99.5 1.2E-12 2.6E-17 133.8 15.9 142 92-244 1-193 (614)
49 PRK08071 L-aspartate oxidase; 99.5 1E-12 2.2E-17 132.4 14.8 140 90-243 3-191 (510)
50 PRK12845 3-ketosteroid-delta-1 99.5 1.2E-12 2.6E-17 133.1 15.3 43 89-133 15-57 (564)
51 PRK12837 3-ketosteroid-delta-1 99.4 1.4E-12 3.1E-17 131.5 15.5 141 90-243 7-236 (513)
52 PRK12844 3-ketosteroid-delta-1 99.4 1.6E-12 3.4E-17 132.3 15.3 141 90-243 6-270 (557)
53 TIGR02032 GG-red-SF geranylger 99.4 3.8E-12 8.2E-17 118.5 16.2 137 91-244 1-150 (295)
54 PF01266 DAO: FAD dependent ox 99.4 2.8E-12 6E-17 122.3 15.5 134 92-242 1-203 (358)
55 TIGR01811 sdhA_Bsu succinate d 99.4 1.9E-12 4.2E-17 132.7 15.1 142 93-244 1-198 (603)
56 PRK12835 3-ketosteroid-delta-1 99.4 2E-12 4.2E-17 132.2 15.0 40 89-129 10-49 (584)
57 PF01494 FAD_binding_3: FAD bi 99.4 2.1E-12 4.6E-17 123.0 14.3 135 90-243 1-173 (356)
58 PRK13800 putative oxidoreducta 99.4 2.1E-12 4.7E-17 138.0 15.9 146 89-244 12-207 (897)
59 PRK08013 oxidoreductase; Provi 99.4 4.1E-12 8.9E-17 124.3 16.6 138 90-244 3-170 (400)
60 COG1249 Lpd Pyruvate/2-oxoglut 99.4 8.7E-13 1.9E-17 129.8 11.3 205 90-327 4-226 (454)
61 PRK08773 2-octaprenyl-3-methyl 99.4 6.6E-12 1.4E-16 122.4 16.9 137 88-243 4-170 (392)
62 COG1053 SdhA Succinate dehydro 99.4 1.2E-12 2.6E-17 132.1 11.5 144 89-242 5-202 (562)
63 COG0654 UbiH 2-polyprenyl-6-me 99.4 6.8E-12 1.5E-16 122.3 15.8 132 90-243 2-163 (387)
64 KOG0405 Pyridine nucleotide-di 99.4 1.7E-12 3.7E-17 119.7 10.6 138 89-243 19-166 (478)
65 PLN02546 glutathione reductase 99.4 4.8E-12 1E-16 128.3 14.7 131 89-242 78-228 (558)
66 PRK07045 putative monooxygenas 99.4 1.2E-11 2.5E-16 120.6 16.7 134 90-245 5-168 (388)
67 PRK12842 putative succinate de 99.4 8.7E-12 1.9E-16 127.5 16.5 44 86-130 5-48 (574)
68 TIGR01813 flavo_cyto_c flavocy 99.4 5.4E-12 1.2E-16 124.9 14.4 139 92-243 1-193 (439)
69 PRK05192 tRNA uridine 5-carbox 99.4 5.8E-12 1.3E-16 127.1 14.6 137 90-242 4-157 (618)
70 PRK07364 2-octaprenyl-6-methox 99.4 1.3E-11 2.8E-16 121.2 16.7 137 90-244 18-183 (415)
71 PRK09126 hypothetical protein; 99.4 1.5E-11 3.3E-16 119.7 16.9 135 90-244 3-169 (392)
72 KOG1335 Dihydrolipoamide dehyd 99.4 3.5E-12 7.5E-17 119.1 11.6 134 89-240 38-183 (506)
73 PTZ00058 glutathione reductase 99.4 3.3E-12 7.2E-17 129.5 12.5 103 89-193 47-157 (561)
74 PRK06134 putative FAD-binding 99.4 1.2E-11 2.5E-16 126.6 16.4 60 172-243 219-279 (581)
75 PF12831 FAD_oxidored: FAD dep 99.4 4.7E-13 1E-17 132.1 5.2 135 92-239 1-147 (428)
76 PRK08244 hypothetical protein; 99.4 2E-11 4.3E-16 122.7 16.7 133 90-243 2-160 (493)
77 PRK06184 hypothetical protein; 99.4 1.9E-11 4.1E-16 123.2 16.4 133 90-243 3-169 (502)
78 PRK06617 2-octaprenyl-6-methox 99.4 2.2E-11 4.9E-16 118.1 16.3 134 91-244 2-162 (374)
79 PRK12839 hypothetical protein; 99.4 1.4E-11 3.1E-16 125.5 15.6 41 89-130 7-47 (572)
80 PRK07608 ubiquinone biosynthes 99.3 2.4E-11 5.2E-16 118.2 16.2 133 90-243 5-168 (388)
81 PRK06115 dihydrolipoamide dehy 99.3 5.5E-12 1.2E-16 125.8 11.9 136 90-242 3-148 (466)
82 PRK06126 hypothetical protein; 99.3 2.3E-11 5.1E-16 123.7 16.6 145 87-243 4-189 (545)
83 PRK06467 dihydrolipoamide dehy 99.3 5.3E-12 1.1E-16 126.1 11.6 136 90-242 4-148 (471)
84 COG0579 Predicted dehydrogenas 99.3 2.7E-11 5.9E-16 117.6 15.6 139 90-242 3-211 (429)
85 PF01134 GIDA: Glucose inhibit 99.3 1.7E-11 3.7E-16 117.7 14.0 133 92-240 1-150 (392)
86 PRK12843 putative FAD-binding 99.3 2.2E-11 4.7E-16 124.6 15.7 61 171-243 222-283 (578)
87 PRK07190 hypothetical protein; 99.3 2.6E-11 5.6E-16 121.5 15.8 129 90-242 5-165 (487)
88 PRK11101 glpA sn-glycerol-3-ph 99.3 3.2E-11 6.9E-16 122.5 16.6 142 90-242 6-211 (546)
89 PRK14694 putative mercuric red 99.3 8.8E-12 1.9E-16 124.5 12.2 139 86-242 2-152 (468)
90 PRK08849 2-octaprenyl-3-methyl 99.3 3.4E-11 7.3E-16 117.2 15.8 135 90-244 3-169 (384)
91 TIGR02023 BchP-ChlP geranylger 99.3 4.3E-11 9.4E-16 116.6 16.6 141 91-244 1-157 (388)
92 KOG2415 Electron transfer flav 99.3 5.8E-12 1.3E-16 118.7 9.9 158 89-249 75-263 (621)
93 PRK08020 ubiF 2-octaprenyl-3-m 99.3 4.3E-11 9.4E-16 116.6 16.4 136 89-243 4-170 (391)
94 PLN02985 squalene monooxygenas 99.3 5E-11 1.1E-15 120.1 17.2 138 88-244 41-210 (514)
95 PRK05714 2-octaprenyl-3-methyl 99.3 4.6E-11 9.9E-16 117.0 16.6 138 90-244 2-170 (405)
96 TIGR01421 gluta_reduc_1 glutat 99.3 1E-11 2.2E-16 123.4 12.0 130 90-242 2-141 (450)
97 PRK07494 2-octaprenyl-6-methox 99.3 5.1E-11 1.1E-15 115.9 16.5 131 88-243 5-168 (388)
98 TIGR02485 CobZ_N-term precorri 99.3 2.7E-11 5.8E-16 119.8 14.5 134 95-243 1-184 (432)
99 PRK06370 mercuric reductase; V 99.3 3E-11 6.4E-16 120.5 14.7 129 90-242 5-145 (463)
100 PRK06416 dihydrolipoamide dehy 99.3 1.1E-11 2.4E-16 123.6 11.5 134 90-242 4-146 (462)
101 PRK06183 mhpA 3-(3-hydroxyphen 99.3 3.9E-11 8.5E-16 121.9 15.5 136 90-244 10-176 (538)
102 PRK07843 3-ketosteroid-delta-1 99.3 4.9E-11 1.1E-15 121.5 16.1 41 89-130 6-46 (557)
103 PLN02507 glutathione reductase 99.3 2.1E-11 4.5E-16 122.6 13.0 137 89-242 24-179 (499)
104 PRK08850 2-octaprenyl-6-methox 99.3 7.2E-11 1.6E-15 115.7 16.5 136 90-244 4-170 (405)
105 PRK06834 hypothetical protein; 99.3 4.7E-11 1E-15 119.7 15.5 131 90-243 3-157 (488)
106 TIGR03862 flavo_PP4765 unchara 99.3 5.3E-11 1.1E-15 114.5 15.0 148 145-320 58-220 (376)
107 PRK07333 2-octaprenyl-6-methox 99.3 6.8E-11 1.5E-15 115.6 16.1 132 91-243 2-168 (403)
108 TIGR01989 COQ6 Ubiquinone bios 99.3 6.5E-11 1.4E-15 117.3 16.1 139 91-244 1-185 (437)
109 TIGR01424 gluta_reduc_2 glutat 99.3 8.8E-12 1.9E-16 123.7 9.7 131 90-242 2-142 (446)
110 TIGR01988 Ubi-OHases Ubiquinon 99.3 8.7E-11 1.9E-15 113.8 16.2 132 92-243 1-164 (385)
111 PRK08243 4-hydroxybenzoate 3-m 99.3 8.6E-11 1.9E-15 114.7 16.1 135 90-245 2-166 (392)
112 PRK11728 hydroxyglutarate oxid 99.3 1.1E-10 2.4E-15 113.9 16.8 135 91-242 3-204 (393)
113 PRK05249 soluble pyridine nucl 99.3 4.8E-11 1E-15 118.9 14.4 54 89-143 4-57 (461)
114 PRK05976 dihydrolipoamide dehy 99.3 1.6E-11 3.4E-16 122.8 10.8 138 90-242 4-154 (472)
115 KOG1298 Squalene monooxygenase 99.3 1.6E-11 3.4E-16 114.8 9.9 137 90-245 45-211 (509)
116 TIGR01984 UbiH 2-polyprenyl-6- 99.3 8.7E-11 1.9E-15 114.0 15.7 133 92-243 1-163 (382)
117 PRK08132 FAD-dependent oxidore 99.3 1.3E-10 2.9E-15 118.2 17.3 135 89-243 22-186 (547)
118 PLN00093 geranylgeranyl diphos 99.3 1.9E-10 4.2E-15 114.1 17.5 145 90-244 39-201 (450)
119 PRK07236 hypothetical protein; 99.3 1.1E-10 2.4E-15 113.7 14.9 131 90-245 6-157 (386)
120 PRK08163 salicylate hydroxylas 99.3 1.2E-10 2.7E-15 113.5 15.3 132 90-244 4-168 (396)
121 PRK06116 glutathione reductase 99.2 2.4E-11 5.1E-16 120.8 10.0 129 90-242 4-143 (450)
122 TIGR01423 trypano_reduc trypan 99.2 9.7E-11 2.1E-15 117.3 13.6 140 90-242 3-163 (486)
123 TIGR03329 Phn_aa_oxid putative 99.2 2.1E-10 4.6E-15 114.3 15.9 36 90-125 24-60 (460)
124 TIGR03364 HpnW_proposed FAD de 99.2 2.1E-10 4.5E-15 110.7 15.3 35 91-126 1-35 (365)
125 PLN02697 lycopene epsilon cycl 99.2 9.5E-11 2.1E-15 117.8 13.2 133 89-242 107-248 (529)
126 TIGR02028 ChlP geranylgeranyl 99.2 2.1E-10 4.5E-15 112.3 15.3 144 91-244 1-162 (398)
127 PRK07588 hypothetical protein; 99.2 2.9E-10 6.4E-15 110.8 16.0 127 92-245 2-161 (391)
128 PRK13748 putative mercuric red 99.2 1.4E-10 3.1E-15 118.4 14.4 55 89-145 97-151 (561)
129 PRK06847 hypothetical protein; 99.2 2.2E-10 4.8E-15 110.9 14.9 131 90-244 4-165 (375)
130 PRK06327 dihydrolipoamide dehy 99.2 7.5E-11 1.6E-15 118.0 11.7 138 90-242 4-157 (475)
131 PRK06475 salicylate hydroxylas 99.2 3.1E-10 6.7E-15 111.1 15.8 134 91-244 3-169 (400)
132 TIGR01377 soxA_mon sarcosine o 99.2 3.6E-10 7.9E-15 109.5 16.1 134 91-242 1-200 (380)
133 PRK07251 pyridine nucleotide-d 99.2 1.9E-10 4.1E-15 114.0 14.3 123 90-242 3-130 (438)
134 PRK05732 2-octaprenyl-6-methox 99.2 4.8E-10 1E-14 109.2 16.8 135 90-243 3-170 (395)
135 COG0492 TrxB Thioredoxin reduc 99.2 2.9E-10 6.3E-15 106.7 14.5 112 90-242 3-115 (305)
136 PRK11445 putative oxidoreducta 99.2 4.3E-10 9.3E-15 108.2 16.0 132 91-244 2-159 (351)
137 COG0578 GlpA Glycerol-3-phosph 99.2 1.4E-10 3.1E-15 114.9 12.4 142 89-242 11-225 (532)
138 TIGR01373 soxB sarcosine oxida 99.2 5E-10 1.1E-14 109.7 16.0 58 170-243 183-241 (407)
139 PRK13369 glycerol-3-phosphate 99.2 5.6E-10 1.2E-14 112.5 16.7 41 89-130 5-45 (502)
140 PRK07538 hypothetical protein; 99.2 5.2E-10 1.1E-14 109.9 15.9 141 92-244 2-167 (413)
141 PRK11259 solA N-methyltryptoph 99.2 6.8E-10 1.5E-14 107.4 16.4 135 90-242 3-204 (376)
142 TIGR01438 TGR thioredoxin and 99.2 1.3E-10 2.9E-15 116.3 11.7 136 90-242 2-155 (484)
143 PLN02463 lycopene beta cyclase 99.2 5.9E-10 1.3E-14 110.3 15.7 132 90-243 28-170 (447)
144 PRK14727 putative mercuric red 99.2 2.8E-10 6.1E-15 114.0 13.6 55 90-145 16-70 (479)
145 PRK12266 glpD glycerol-3-phosp 99.2 9.2E-10 2E-14 111.0 17.3 40 89-129 5-44 (508)
146 PRK06292 dihydrolipoamide dehy 99.2 1.7E-10 3.7E-15 114.9 11.9 129 90-241 3-141 (460)
147 PRK06996 hypothetical protein; 99.2 7.1E-10 1.5E-14 108.5 16.0 134 89-241 10-173 (398)
148 TIGR01350 lipoamide_DH dihydro 99.2 1.2E-10 2.7E-15 116.0 10.7 133 91-242 2-143 (461)
149 PRK00711 D-amino acid dehydrog 99.2 5.8E-10 1.3E-14 109.5 15.4 58 169-242 200-257 (416)
150 PRK12409 D-amino acid dehydrog 99.2 9.7E-10 2.1E-14 107.8 16.7 35 91-126 2-36 (410)
151 PRK08010 pyridine nucleotide-d 99.2 4.2E-10 9.1E-15 111.6 14.1 124 90-242 3-131 (441)
152 PF13738 Pyr_redox_3: Pyridine 99.2 2.6E-11 5.5E-16 107.1 4.9 129 94-243 1-139 (203)
153 PTZ00367 squalene epoxidase; P 99.2 9.7E-10 2.1E-14 111.7 16.6 151 86-244 29-221 (567)
154 PRK05868 hypothetical protein; 99.2 9.6E-10 2.1E-14 106.6 15.7 130 91-245 2-163 (372)
155 PLN02172 flavin-containing mon 99.2 5.8E-10 1.3E-14 110.9 14.4 140 90-242 10-173 (461)
156 TIGR02053 MerA mercuric reduct 99.2 2.6E-10 5.6E-15 113.8 11.9 131 91-242 1-140 (463)
157 TIGR02360 pbenz_hydroxyl 4-hyd 99.1 1E-09 2.2E-14 107.1 15.5 137 90-245 2-166 (390)
158 PRK07818 dihydrolipoamide dehy 99.1 4E-10 8.8E-15 112.5 12.8 53 90-144 4-56 (466)
159 TIGR01292 TRX_reduct thioredox 99.1 7E-10 1.5E-14 103.6 13.2 112 91-242 1-112 (300)
160 PRK08294 phenol 2-monooxygenas 99.1 1.5E-09 3.2E-14 112.1 16.7 140 90-243 32-211 (634)
161 TIGR01790 carotene-cycl lycope 99.1 5.3E-10 1.2E-14 108.8 12.3 131 92-242 1-141 (388)
162 PLN02464 glycerol-3-phosphate 99.1 7.9E-10 1.7E-14 113.9 13.9 65 168-242 230-296 (627)
163 PTZ00052 thioredoxin reductase 99.1 5.1E-10 1.1E-14 112.6 12.2 54 90-144 5-66 (499)
164 PRK06753 hypothetical protein; 99.1 9.5E-10 2.1E-14 106.4 13.5 126 92-243 2-153 (373)
165 PRK01747 mnmC bifunctional tRN 99.1 1.7E-09 3.8E-14 112.5 16.3 59 168-243 406-464 (662)
166 PTZ00153 lipoamide dehydrogena 99.1 3.6E-10 7.8E-15 116.4 10.9 56 89-145 115-171 (659)
167 PRK06912 acoL dihydrolipoamide 99.1 1E-09 2.3E-14 109.3 13.4 132 92-242 2-144 (458)
168 PRK07846 mycothione reductase; 99.1 4.6E-10 1E-14 111.6 10.7 129 90-242 1-140 (451)
169 TIGR00136 gidA glucose-inhibit 99.1 2.3E-09 4.9E-14 108.3 15.2 136 91-242 1-154 (617)
170 TIGR01320 mal_quin_oxido malat 99.1 3.8E-09 8.2E-14 105.7 16.7 64 168-242 176-240 (483)
171 COG2072 TrkA Predicted flavopr 99.1 2E-09 4.4E-14 106.5 14.1 137 89-244 7-146 (443)
172 KOG2404 Fumarate reductase, fl 99.1 9.4E-10 2E-14 100.9 10.5 140 92-242 11-206 (477)
173 PTZ00383 malate:quinone oxidor 99.0 4.7E-09 1E-13 105.1 15.7 60 168-242 209-273 (497)
174 PRK07845 flavoprotein disulfid 99.0 1.7E-09 3.6E-14 108.1 12.3 135 91-242 2-151 (466)
175 PF05834 Lycopene_cycl: Lycope 99.0 1.9E-09 4.1E-14 104.7 11.7 128 92-243 1-143 (374)
176 TIGR03452 mycothione_red mycot 99.0 7.2E-10 1.6E-14 110.3 8.9 129 90-242 2-143 (452)
177 COG0445 GidA Flavin-dependent 99.0 1.2E-09 2.5E-14 106.9 9.0 135 90-240 4-156 (621)
178 PRK15317 alkyl hydroperoxide r 99.0 4.9E-09 1.1E-13 106.1 13.9 114 88-242 209-322 (517)
179 PRK05257 malate:quinone oxidor 99.0 1.3E-08 2.9E-13 102.0 16.1 37 90-126 5-42 (494)
180 PF00732 GMC_oxred_N: GMC oxid 99.0 5.9E-09 1.3E-13 97.7 12.8 60 175-242 197-258 (296)
181 KOG4716 Thioredoxin reductase 99.0 4.2E-09 9.1E-14 97.3 10.6 71 89-160 18-100 (503)
182 TIGR03140 AhpF alkyl hydropero 99.0 8.1E-09 1.8E-13 104.4 13.7 114 88-242 210-323 (515)
183 TIGR03143 AhpF_homolog putativ 99.0 8.1E-09 1.8E-13 105.3 13.4 111 90-242 4-114 (555)
184 TIGR02730 carot_isom carotene 98.9 1.5E-08 3.2E-13 102.0 15.0 56 171-241 230-285 (493)
185 TIGR03219 salicylate_mono sali 98.9 1.5E-08 3.3E-13 99.6 14.5 126 92-243 2-160 (414)
186 PRK10262 thioredoxin reductase 98.9 1.2E-08 2.6E-13 96.8 13.4 115 87-242 3-117 (321)
187 COG3573 Predicted oxidoreducta 98.9 2.7E-08 5.9E-13 92.0 14.7 151 90-242 5-228 (552)
188 PRK13339 malate:quinone oxidor 98.9 2E-08 4.3E-13 100.4 15.1 39 89-127 5-44 (497)
189 COG0665 DadA Glycine/D-amino a 98.9 1.4E-08 3E-13 98.5 12.9 37 90-127 4-40 (387)
190 PLN02927 antheraxanthin epoxid 98.9 3.7E-08 8.1E-13 101.2 16.2 133 89-244 80-250 (668)
191 COG1233 Phytoene dehydrogenase 98.9 1.9E-08 4E-13 101.0 13.7 40 90-130 3-42 (487)
192 PRK13977 myosin-cross-reactive 98.9 1.9E-08 4.1E-13 101.0 13.4 41 90-130 22-65 (576)
193 PRK05329 anaerobic glycerol-3- 98.9 1.4E-07 3E-12 92.6 19.0 59 172-243 261-319 (422)
194 PRK05675 sdhA succinate dehydr 98.9 2.4E-08 5.2E-13 102.1 13.9 131 103-244 1-191 (570)
195 TIGR01372 soxA sarcosine oxida 98.9 3.5E-08 7.6E-13 106.8 15.0 125 89-242 162-286 (985)
196 PRK09897 hypothetical protein; 98.8 6E-08 1.3E-12 97.8 15.2 137 91-242 2-166 (534)
197 TIGR02734 crtI_fam phytoene de 98.8 6.3E-08 1.4E-12 97.6 14.9 55 171-240 220-274 (502)
198 PF04820 Trp_halogenase: Trypt 98.8 1.6E-08 3.5E-13 100.5 10.4 67 163-245 147-214 (454)
199 PRK07233 hypothetical protein; 98.8 1.1E-07 2.3E-12 93.7 15.6 38 92-130 1-38 (434)
200 PF13454 NAD_binding_9: FAD-NA 98.8 8.5E-08 1.8E-12 81.5 12.7 131 94-240 1-155 (156)
201 KOG1399 Flavin-containing mono 98.8 5.7E-08 1.2E-12 95.6 13.0 136 90-242 6-153 (448)
202 PF07992 Pyr_redox_2: Pyridine 98.8 9.8E-09 2.1E-13 90.2 6.5 116 92-241 1-121 (201)
203 TIGR02462 pyranose_ox pyranose 98.8 7.5E-08 1.6E-12 97.1 13.5 42 91-134 1-42 (544)
204 KOG0042 Glycerol-3-phosphate d 98.8 1E-08 2.2E-13 99.9 6.6 44 86-130 63-106 (680)
205 COG2509 Uncharacterized FAD-de 98.8 8.4E-08 1.8E-12 92.2 12.4 70 170-257 173-243 (486)
206 KOG2820 FAD-dependent oxidored 98.8 1.2E-07 2.7E-12 87.8 12.6 36 90-126 7-42 (399)
207 KOG2844 Dimethylglycine dehydr 98.7 8.7E-08 1.9E-12 95.6 12.1 136 90-242 39-243 (856)
208 PF06039 Mqo: Malate:quinone o 98.7 1.7E-07 3.7E-12 90.8 13.8 64 170-242 181-244 (488)
209 TIGR01789 lycopene_cycl lycope 98.7 1.7E-07 3.7E-12 90.9 13.6 124 92-242 1-138 (370)
210 PF00743 FMO-like: Flavin-bind 98.7 4.5E-08 9.7E-13 98.9 9.6 134 92-243 3-151 (531)
211 KOG2311 NAD/FAD-utilizing prot 98.7 3.6E-08 7.9E-13 94.8 8.3 135 90-240 28-184 (679)
212 PTZ00363 rab-GDP dissociation 98.7 3.5E-07 7.5E-12 90.4 15.4 40 90-130 4-43 (443)
213 TIGR02733 desat_CrtD C-3',4' d 98.7 4.4E-07 9.5E-12 91.3 16.2 39 91-130 2-40 (492)
214 PRK02106 choline dehydrogenase 98.7 6.1E-08 1.3E-12 99.1 9.9 56 177-242 207-262 (560)
215 PF00070 Pyr_redox: Pyridine n 98.7 3.3E-07 7.1E-12 68.7 11.0 77 93-210 2-78 (80)
216 KOG2614 Kynurenine 3-monooxyge 98.7 6.3E-08 1.4E-12 92.2 8.5 38 91-129 3-40 (420)
217 KOG2852 Possible oxidoreductas 98.7 9.8E-08 2.1E-12 86.6 9.2 142 91-243 11-209 (380)
218 TIGR01816 sdhA_forward succina 98.7 2.7E-07 5.8E-12 94.4 13.6 90 145-244 69-183 (565)
219 COG1231 Monoamine oxidase [Ami 98.6 3.8E-07 8.2E-12 88.1 12.4 42 89-131 6-47 (450)
220 PRK12779 putative bifunctional 98.6 9.6E-08 2.1E-12 102.5 9.1 99 89-241 305-403 (944)
221 PRK09853 putative selenate red 98.6 1.9E-07 4.1E-12 99.5 10.9 39 90-129 539-577 (1019)
222 COG3380 Predicted NAD/FAD-depe 98.6 2.1E-07 4.6E-12 83.9 9.5 130 91-239 2-157 (331)
223 PRK08255 salicylyl-CoA 5-hydro 98.6 1.8E-07 3.9E-12 98.8 10.7 124 92-243 2-142 (765)
224 TIGR03378 glycerol3P_GlpB glyc 98.6 1.4E-06 3E-11 84.9 15.5 59 171-242 264-323 (419)
225 TIGR01810 betA choline dehydro 98.6 1.9E-07 4.1E-12 94.9 9.9 57 176-242 199-255 (532)
226 TIGR03315 Se_ygfK putative sel 98.6 1.9E-07 4E-12 99.9 8.7 40 90-130 537-576 (1012)
227 PRK12831 putative oxidoreducta 98.5 1.2E-07 2.5E-12 94.8 6.6 41 89-130 139-179 (464)
228 KOG2665 Predicted FAD-dependen 98.5 5.4E-07 1.2E-11 82.9 9.9 142 90-242 48-257 (453)
229 PF13450 NAD_binding_8: NAD(P) 98.5 1.2E-07 2.6E-12 68.9 4.4 35 95-130 1-35 (68)
230 PLN02785 Protein HOTHEAD 98.5 6.1E-07 1.3E-11 91.9 10.8 33 90-124 55-87 (587)
231 TIGR00137 gid_trmFO tRNA:m(5)U 98.5 1.1E-06 2.4E-11 86.0 12.1 36 91-127 1-36 (433)
232 KOG1238 Glucose dehydrogenase/ 98.5 1.2E-06 2.7E-11 87.9 11.6 38 89-126 56-93 (623)
233 PLN02612 phytoene desaturase 98.5 4.5E-06 9.7E-11 85.4 16.0 40 89-129 92-131 (567)
234 COG3634 AhpF Alkyl hydroperoxi 98.5 5.1E-07 1.1E-11 84.0 7.8 110 89-240 210-323 (520)
235 PRK09564 coenzyme A disulfide 98.5 1.1E-06 2.5E-11 87.1 11.0 111 92-242 2-115 (444)
236 PF13434 K_oxygenase: L-lysine 98.4 5.4E-07 1.2E-11 86.3 8.2 136 90-241 2-158 (341)
237 COG3075 GlpB Anaerobic glycero 98.4 2.7E-06 5.8E-11 78.8 12.2 59 172-243 260-318 (421)
238 PRK11749 dihydropyrimidine deh 98.4 4E-07 8.7E-12 90.8 7.5 98 89-241 139-236 (457)
239 TIGR01316 gltA glutamate synth 98.4 3.1E-07 6.8E-12 91.3 6.3 40 89-129 132-171 (449)
240 PRK13512 coenzyme A disulfide 98.4 1.6E-06 3.4E-11 86.0 11.2 114 92-242 3-117 (438)
241 PRK12775 putative trifunctiona 98.4 3.5E-07 7.6E-12 99.0 6.7 73 90-193 430-502 (1006)
242 PRK12778 putative bifunctional 98.4 5.2E-07 1.1E-11 95.4 7.1 40 89-129 430-469 (752)
243 PRK12810 gltD glutamate syntha 98.4 6.1E-07 1.3E-11 89.8 7.2 39 89-128 142-180 (471)
244 COG1232 HemY Protoporphyrinoge 98.4 3E-06 6.4E-11 83.3 11.5 37 92-129 2-40 (444)
245 KOG3855 Monooxygenase involved 98.4 7.1E-06 1.5E-10 78.2 13.2 139 90-242 36-217 (481)
246 KOG2853 Possible oxidoreductas 98.4 9.3E-06 2E-10 75.6 13.4 37 89-125 85-124 (509)
247 PRK09754 phenylpropionate diox 98.3 2.2E-06 4.8E-11 83.8 10.0 107 91-242 4-112 (396)
248 TIGR01318 gltD_gamma_fam gluta 98.3 1.1E-06 2.3E-11 88.0 7.6 99 89-242 140-238 (467)
249 COG1148 HdrA Heterodisulfide r 98.3 1E-06 2.2E-11 85.2 7.0 82 90-198 124-205 (622)
250 PRK04965 NADH:flavorubredoxin 98.3 5.5E-06 1.2E-10 80.5 12.2 108 91-242 3-111 (377)
251 COG2303 BetA Choline dehydroge 98.3 2.7E-06 5.8E-11 86.5 9.7 59 176-242 208-266 (542)
252 PRK12769 putative oxidoreducta 98.3 1.3E-06 2.9E-11 90.8 7.1 38 90-128 327-364 (654)
253 PRK12770 putative glutamate sy 98.3 2.1E-06 4.6E-11 82.7 8.0 38 90-128 18-55 (352)
254 KOG4254 Phytoene desaturase [C 98.3 2.7E-06 5.9E-11 81.7 8.3 56 171-241 265-320 (561)
255 PRK05335 tRNA (uracil-5-)-meth 98.2 6.4E-06 1.4E-10 80.4 10.2 105 91-198 3-126 (436)
256 PLN02852 ferredoxin-NADP+ redu 98.2 3.7E-06 7.9E-11 84.1 8.8 37 91-128 27-65 (491)
257 PLN02268 probable polyamine ox 98.2 2.1E-06 4.7E-11 84.9 7.0 40 92-132 2-41 (435)
258 PRK12814 putative NADPH-depend 98.2 1.8E-06 3.9E-11 89.8 6.5 38 90-128 193-230 (652)
259 TIGR01317 GOGAT_sm_gam glutama 98.2 2.6E-06 5.7E-11 85.5 7.2 38 90-128 143-180 (485)
260 PTZ00318 NADH dehydrogenase-li 98.2 1.9E-05 4.1E-10 78.0 13.1 116 90-242 10-125 (424)
261 PRK06567 putative bifunctional 98.2 3.4E-06 7.4E-11 89.3 7.9 38 90-128 383-420 (1028)
262 PRK05976 dihydrolipoamide dehy 98.2 2.7E-05 5.9E-10 78.0 13.9 101 91-243 181-282 (472)
263 KOG0029 Amine oxidase [Seconda 98.2 1.8E-06 3.9E-11 86.5 5.2 40 90-130 15-54 (501)
264 PRK04965 NADH:flavorubredoxin 98.2 2.7E-05 5.8E-10 75.7 13.2 98 91-242 142-239 (377)
265 PRK07208 hypothetical protein; 98.2 1.9E-06 4.2E-11 86.3 5.4 40 90-130 4-43 (479)
266 TIGR01350 lipoamide_DH dihydro 98.2 3.6E-05 7.7E-10 76.8 14.1 100 91-243 171-270 (461)
267 PRK09754 phenylpropionate diox 98.2 2.5E-05 5.5E-10 76.4 12.7 97 91-242 145-241 (396)
268 TIGR00031 UDP-GALP_mutase UDP- 98.1 2.7E-06 5.8E-11 82.4 5.2 39 91-130 2-40 (377)
269 COG0562 Glf UDP-galactopyranos 98.1 3E-06 6.4E-11 78.4 5.1 40 91-131 2-41 (374)
270 PRK07251 pyridine nucleotide-d 98.1 3.9E-05 8.5E-10 76.1 13.3 97 91-243 158-254 (438)
271 PRK12809 putative oxidoreducta 98.1 4.8E-06 1E-10 86.5 7.0 38 90-128 310-347 (639)
272 PRK06416 dihydrolipoamide dehy 98.1 5.5E-05 1.2E-09 75.5 14.2 101 91-243 173-273 (462)
273 PRK06912 acoL dihydrolipoamide 98.1 5.2E-05 1.1E-09 75.7 13.8 99 91-243 171-269 (458)
274 PRK06370 mercuric reductase; V 98.1 6.7E-05 1.5E-09 74.9 14.5 101 91-243 172-272 (463)
275 TIGR02053 MerA mercuric reduct 98.1 6.4E-05 1.4E-09 75.1 14.1 101 91-243 167-267 (463)
276 PRK05249 soluble pyridine nucl 98.1 5.4E-05 1.2E-09 75.5 13.6 98 91-243 176-273 (461)
277 PRK07818 dihydrolipoamide dehy 98.1 6.8E-05 1.5E-09 75.0 14.3 102 91-243 173-274 (466)
278 PRK06116 glutathione reductase 98.1 5.6E-05 1.2E-09 75.2 13.5 99 91-243 168-266 (450)
279 TIGR02352 thiamin_ThiO glycine 98.1 3.6E-05 7.9E-10 73.0 11.7 60 168-243 135-194 (337)
280 PTZ00188 adrenodoxin reductase 98.1 6.8E-06 1.5E-10 81.4 6.6 37 91-128 40-77 (506)
281 PRK11883 protoporphyrinogen ox 98.1 3.6E-06 7.9E-11 83.4 4.8 38 92-130 2-41 (451)
282 PRK09564 coenzyme A disulfide 98.1 5.6E-05 1.2E-09 75.0 13.1 97 91-242 150-246 (444)
283 COG2907 Predicted NAD/FAD-bind 98.1 2.6E-05 5.7E-10 72.9 9.8 38 90-129 8-45 (447)
284 COG1249 Lpd Pyruvate/2-oxoglut 98.1 7.9E-05 1.7E-09 73.8 13.9 100 91-243 174-273 (454)
285 PRK06115 dihydrolipoamide dehy 98.1 8E-05 1.7E-09 74.5 14.1 102 91-242 175-276 (466)
286 COG4529 Uncharacterized protei 98.0 8.2E-05 1.8E-09 72.7 13.3 139 91-244 2-166 (474)
287 PRK13984 putative oxidoreducta 98.0 9.2E-06 2E-10 83.9 7.1 39 89-128 282-320 (604)
288 KOG0404 Thioredoxin reductase 98.0 2.4E-05 5.3E-10 68.9 8.6 116 91-242 9-124 (322)
289 TIGR03169 Nterm_to_SelD pyridi 98.0 3.2E-05 7E-10 74.6 10.3 105 92-242 1-107 (364)
290 PLN02576 protoporphyrinogen ox 98.0 6E-06 1.3E-10 83.1 5.4 41 90-130 12-52 (496)
291 TIGR01421 gluta_reduc_1 glutat 98.0 9.7E-05 2.1E-09 73.6 13.9 100 91-243 167-266 (450)
292 PRK06327 dihydrolipoamide dehy 98.0 0.00014 3E-09 73.0 14.4 102 91-243 184-285 (475)
293 COG0446 HcaD Uncharacterized N 98.0 6.4E-05 1.4E-09 73.1 11.8 99 91-242 137-237 (415)
294 PRK12771 putative glutamate sy 98.0 1E-05 2.2E-10 82.9 6.3 38 90-128 137-174 (564)
295 TIGR03140 AhpF alkyl hydropero 98.0 8.7E-05 1.9E-09 75.2 12.5 98 91-242 353-450 (515)
296 KOG2403 Succinate dehydrogenas 98.0 1.2E-05 2.5E-10 79.2 5.8 191 90-296 55-303 (642)
297 TIGR00562 proto_IX_ox protopor 98.0 8.8E-06 1.9E-10 81.1 5.1 40 91-130 3-45 (462)
298 PRK14989 nitrite reductase sub 97.9 5.8E-05 1.3E-09 80.5 11.3 107 91-242 4-113 (847)
299 TIGR01424 gluta_reduc_2 glutat 97.9 0.00015 3.2E-09 72.2 13.6 97 91-242 167-263 (446)
300 PRK08010 pyridine nucleotide-d 97.9 0.00017 3.6E-09 71.6 13.7 97 91-243 159-255 (441)
301 PLN02507 glutathione reductase 97.9 0.00017 3.7E-09 72.8 13.8 98 91-243 204-301 (499)
302 PRK07845 flavoprotein disulfid 97.9 0.00018 3.9E-09 72.0 13.7 98 91-243 178-275 (466)
303 PRK14727 putative mercuric red 97.9 0.00018 3.9E-09 72.3 13.8 96 91-243 189-284 (479)
304 PRK14989 nitrite reductase sub 97.9 0.00024 5.2E-09 75.9 15.3 99 91-242 146-245 (847)
305 TIGR03385 CoA_CoA_reduc CoA-di 97.9 0.00013 2.8E-09 72.1 12.5 96 91-242 138-233 (427)
306 PLN02676 polyamine oxidase 97.9 1.3E-05 2.8E-10 80.6 5.4 45 85-130 21-66 (487)
307 TIGR02374 nitri_red_nirB nitri 97.9 4.4E-05 9.6E-10 81.1 9.6 106 93-242 1-108 (785)
308 PRK14694 putative mercuric red 97.9 0.00018 3.9E-09 72.0 13.5 96 91-243 179-274 (468)
309 PRK10262 thioredoxin reductase 97.9 0.00014 3E-09 69.0 11.8 102 91-242 147-248 (321)
310 PLN02568 polyamine oxidase 97.9 1.6E-05 3.4E-10 80.8 5.6 40 90-130 5-49 (539)
311 PRK06467 dihydrolipoamide dehy 97.9 0.00024 5.1E-09 71.2 13.9 101 91-243 175-275 (471)
312 COG1252 Ndh NADH dehydrogenase 97.9 0.00015 3.2E-09 70.5 11.8 162 91-327 156-333 (405)
313 TIGR02731 phytoene_desat phyto 97.9 1.5E-05 3.1E-10 79.4 5.1 38 92-130 1-38 (453)
314 PRK15317 alkyl hydroperoxide r 97.9 0.00014 3E-09 73.7 12.2 98 91-242 352-449 (517)
315 PRK12416 protoporphyrinogen ox 97.9 1.3E-05 2.8E-10 80.0 4.6 39 92-130 3-46 (463)
316 TIGR01423 trypano_reduc trypan 97.9 0.00023 5E-09 71.5 13.4 99 91-243 188-289 (486)
317 PRK13748 putative mercuric red 97.8 0.00022 4.8E-09 73.0 13.3 96 91-243 271-366 (561)
318 COG3349 Uncharacterized conser 97.8 1.8E-05 3.8E-10 77.9 4.7 38 92-130 2-39 (485)
319 PRK07846 mycothione reductase; 97.8 0.00023 5E-09 70.9 12.6 97 91-243 167-263 (451)
320 TIGR02374 nitri_red_nirB nitri 97.8 0.00017 3.8E-09 76.6 12.3 98 91-242 141-238 (785)
321 TIGR03377 glycerol3P_GlpA glyc 97.8 0.00033 7.1E-09 71.0 13.5 65 168-242 126-190 (516)
322 PTZ00058 glutathione reductase 97.8 0.0003 6.5E-09 71.9 13.1 98 91-242 238-336 (561)
323 COG0493 GltD NADPH-dependent g 97.8 2.4E-05 5.2E-10 77.5 5.0 73 91-194 124-196 (457)
324 COG1252 Ndh NADH dehydrogenase 97.8 0.0001 2.2E-09 71.6 8.9 207 91-346 4-242 (405)
325 TIGR01292 TRX_reduct thioredox 97.8 0.00035 7.5E-09 65.0 12.0 97 91-242 142-238 (300)
326 PRK13512 coenzyme A disulfide 97.7 0.00028 6E-09 70.1 11.7 93 91-242 149-241 (438)
327 TIGR01316 gltA glutamate synth 97.7 0.00053 1.2E-08 68.3 13.5 107 91-241 273-386 (449)
328 PTZ00052 thioredoxin reductase 97.7 0.00047 1E-08 69.6 13.1 97 91-243 183-279 (499)
329 TIGR01438 TGR thioredoxin and 97.7 0.00043 9.4E-09 69.6 12.8 99 92-243 182-280 (484)
330 PRK06292 dihydrolipoamide dehy 97.7 0.00059 1.3E-08 68.0 13.4 99 91-243 170-269 (460)
331 TIGR03452 mycothione_red mycot 97.7 0.00049 1.1E-08 68.6 12.7 97 91-243 170-266 (452)
332 KOG1800 Ferredoxin/adrenodoxin 97.7 8.5E-05 1.8E-09 70.3 6.6 39 90-128 20-59 (468)
333 PLN02529 lysine-specific histo 97.7 5E-05 1.1E-09 79.3 5.2 40 90-130 160-199 (738)
334 PLN02546 glutathione reductase 97.7 0.00071 1.5E-08 69.1 13.5 99 91-243 253-351 (558)
335 PF00996 GDI: GDP dissociation 97.6 0.0006 1.3E-08 67.1 12.2 39 90-129 4-42 (438)
336 COG1206 Gid NAD(FAD)-utilizing 97.6 0.00029 6.2E-09 65.6 9.1 105 91-198 4-127 (439)
337 PTZ00153 lipoamide dehydrogena 97.6 0.00068 1.5E-08 70.4 13.0 108 91-243 313-428 (659)
338 TIGR03197 MnmC_Cterm tRNA U-34 97.6 0.00058 1.3E-08 66.4 11.7 59 168-243 133-191 (381)
339 TIGR02732 zeta_caro_desat caro 97.6 6.2E-05 1.3E-09 75.5 4.9 37 92-129 1-37 (474)
340 PF06100 Strep_67kDa_ant: Stre 97.6 0.0013 2.8E-08 64.9 13.7 40 91-130 3-45 (500)
341 PLN02328 lysine-specific histo 97.6 7.1E-05 1.5E-09 78.7 5.4 40 90-130 238-277 (808)
342 PLN02487 zeta-carotene desatur 97.6 9E-05 1.9E-09 75.6 5.6 37 91-128 76-112 (569)
343 PRK12831 putative oxidoreducta 97.6 0.0012 2.7E-08 65.9 13.4 107 91-242 282-396 (464)
344 PTZ00318 NADH dehydrogenase-li 97.5 0.00097 2.1E-08 65.9 11.8 161 92-327 175-349 (424)
345 KOG1336 Monodehydroascorbate/f 97.5 0.0015 3.3E-08 63.7 11.9 101 90-243 213-314 (478)
346 PRK11749 dihydropyrimidine deh 97.4 0.002 4.3E-08 64.3 13.0 108 91-242 274-387 (457)
347 KOG1335 Dihydrolipoamide dehyd 97.4 0.00077 1.7E-08 64.0 8.5 103 91-242 212-314 (506)
348 PLN03000 amine oxidase 97.4 0.00021 4.5E-09 75.5 5.3 42 89-131 183-224 (881)
349 COG3486 IucD Lysine/ornithine 97.3 0.0029 6.2E-08 60.8 11.6 133 90-243 5-158 (436)
350 PRK12810 gltD glutamate syntha 97.3 0.0022 4.7E-08 64.3 11.0 116 91-242 282-400 (471)
351 PLN02976 amine oxidase 97.2 0.00036 7.7E-09 76.6 5.2 41 89-130 692-732 (1713)
352 KOG1276 Protoporphyrinogen oxi 97.2 0.00041 8.8E-09 66.8 4.9 40 90-129 11-51 (491)
353 PRK12770 putative glutamate sy 97.2 0.0023 5.1E-08 61.5 10.1 105 91-242 173-286 (352)
354 KOG0685 Flavin-containing amin 97.2 0.00048 1E-08 67.2 5.1 41 90-130 21-61 (498)
355 PRK12769 putative oxidoreducta 97.1 0.0063 1.4E-07 63.6 13.4 108 91-242 469-584 (654)
356 TIGR03143 AhpF_homolog putativ 97.1 0.0032 6.9E-08 64.5 10.9 97 91-242 144-246 (555)
357 PRK12778 putative bifunctional 97.1 0.0061 1.3E-07 64.7 13.0 108 91-242 571-686 (752)
358 TIGR01372 soxA sarcosine oxida 97.1 0.014 3E-07 63.8 15.7 157 91-329 318-475 (985)
359 KOG0399 Glutamate synthase [Am 97.1 0.0011 2.4E-08 70.3 6.5 38 90-128 1785-1822(2142)
360 TIGR01318 gltD_gamma_fam gluta 97.0 0.011 2.4E-07 59.2 13.3 108 91-242 283-398 (467)
361 TIGR03169 Nterm_to_SelD pyridi 97.0 0.0075 1.6E-07 58.1 11.6 92 91-242 146-243 (364)
362 KOG3923 D-aspartate oxidase [A 97.0 0.0048 1E-07 56.9 9.2 41 91-131 4-50 (342)
363 PF13434 K_oxygenase: L-lysine 96.9 0.01 2.2E-07 57.0 11.3 134 90-239 190-338 (341)
364 PRK09853 putative selenate red 96.9 0.02 4.3E-07 62.0 14.5 175 91-331 669-847 (1019)
365 PRK12779 putative bifunctional 96.9 0.013 2.7E-07 63.6 12.8 108 91-242 448-562 (944)
366 KOG1439 RAB proteins geranylge 96.7 0.015 3.3E-07 55.7 10.7 39 90-129 4-42 (440)
367 PRK13984 putative oxidoreducta 96.4 0.022 4.8E-07 58.9 10.8 109 91-242 419-538 (604)
368 PRK12814 putative NADPH-depend 96.4 0.023 5.1E-07 59.3 11.0 107 91-241 324-436 (652)
369 PRK12775 putative trifunctiona 96.4 0.041 8.9E-07 60.2 13.1 108 91-242 572-686 (1006)
370 COG3634 AhpF Alkyl hydroperoxi 96.4 0.043 9.3E-07 51.9 11.2 77 90-211 354-430 (520)
371 PRK12809 putative oxidoreducta 96.4 0.052 1.1E-06 56.6 13.1 108 91-242 452-567 (639)
372 COG1251 NirB NAD(P)H-nitrite r 96.2 0.011 2.3E-07 60.9 6.8 97 92-242 147-243 (793)
373 COG0492 TrxB Thioredoxin reduc 96.2 0.048 1E-06 51.4 10.8 95 91-242 144-238 (305)
374 KOG1336 Monodehydroascorbate/f 96.0 0.021 4.4E-07 56.0 7.5 103 90-240 74-179 (478)
375 PLN02852 ferredoxin-NADP+ redu 95.9 0.44 9.5E-06 48.0 16.6 59 184-242 288-354 (491)
376 TIGR03315 Se_ygfK putative sel 95.9 0.07 1.5E-06 58.0 11.5 35 90-124 666-701 (1012)
377 COG5044 MRS6 RAB proteins gera 95.7 0.029 6.2E-07 53.4 6.6 41 88-129 4-44 (434)
378 PRK12771 putative glutamate sy 95.6 0.17 3.7E-06 51.9 12.7 107 91-242 268-380 (564)
379 TIGR01317 GOGAT_sm_gam glutama 95.6 0.19 4.2E-06 50.6 12.8 35 91-125 284-318 (485)
380 PF01593 Amino_oxidase: Flavin 95.1 0.02 4.4E-07 55.3 3.9 30 100-130 1-30 (450)
381 KOG0404 Thioredoxin reductase 94.8 0.15 3.2E-06 45.5 7.9 98 91-242 158-255 (322)
382 KOG2495 NADH-dehydrogenase (ub 94.5 0.19 4.2E-06 48.8 8.7 98 91-242 219-329 (491)
383 COG0446 HcaD Uncharacterized N 94.2 0.24 5.1E-06 48.0 8.8 106 93-243 1-107 (415)
384 PF02558 ApbA: Ketopantoate re 94.1 0.07 1.5E-06 44.5 4.4 31 93-124 1-31 (151)
385 PF01210 NAD_Gly3P_dh_N: NAD-d 94.0 0.067 1.5E-06 45.2 3.9 31 93-124 2-32 (157)
386 TIGR03385 CoA_CoA_reduc CoA-di 93.9 0.22 4.8E-06 49.1 8.1 47 182-242 55-103 (427)
387 COG4716 Myosin-crossreactive a 93.8 0.12 2.5E-06 49.5 5.5 39 91-129 23-64 (587)
388 PF02737 3HCDH_N: 3-hydroxyacy 93.6 0.098 2.1E-06 45.4 4.4 31 93-124 2-32 (180)
389 PRK01438 murD UDP-N-acetylmura 93.6 0.089 1.9E-06 52.8 4.6 33 91-124 17-49 (480)
390 KOG2755 Oxidoreductase [Genera 93.5 0.05 1.1E-06 49.5 2.3 33 93-125 2-35 (334)
391 PLN02172 flavin-containing mon 93.4 0.15 3.2E-06 51.1 5.9 34 90-124 204-237 (461)
392 PRK02705 murD UDP-N-acetylmura 93.4 0.095 2.1E-06 52.2 4.5 34 92-126 2-35 (459)
393 COG0569 TrkA K+ transport syst 93.2 0.11 2.4E-06 46.8 4.1 32 92-124 2-33 (225)
394 PF13738 Pyr_redox_3: Pyridine 93.0 0.14 3E-06 44.6 4.5 34 90-124 167-200 (203)
395 COG3486 IucD Lysine/ornithine 92.9 1.9 4.1E-05 41.9 12.0 63 170-241 275-339 (436)
396 KOG2495 NADH-dehydrogenase (ub 92.4 1.3 2.8E-05 43.4 10.2 116 90-243 55-171 (491)
397 PRK06249 2-dehydropantoate 2-r 92.4 0.2 4.4E-06 47.3 5.0 33 91-124 6-38 (313)
398 KOG1346 Programmed cell death 92.1 0.47 1E-05 46.1 6.9 98 91-242 348-449 (659)
399 PF03721 UDPG_MGDP_dh_N: UDP-g 92.0 0.17 3.6E-06 44.2 3.6 32 92-124 2-33 (185)
400 KOG3851 Sulfide:quinone oxidor 91.9 0.15 3.3E-06 47.7 3.4 36 89-124 38-74 (446)
401 KOG4405 GDP dissociation inhib 91.8 0.18 4E-06 48.6 3.8 40 89-129 7-46 (547)
402 PF00743 FMO-like: Flavin-bind 91.7 0.81 1.7E-05 46.7 8.7 34 90-124 183-216 (531)
403 COG1251 NirB NAD(P)H-nitrite r 91.7 0.94 2E-05 47.1 9.0 107 91-242 4-113 (793)
404 PRK14106 murD UDP-N-acetylmura 91.7 0.26 5.7E-06 48.9 5.1 33 91-124 6-38 (450)
405 PRK05708 2-dehydropantoate 2-r 91.6 0.25 5.4E-06 46.6 4.5 33 91-124 3-35 (305)
406 PRK06129 3-hydroxyacyl-CoA deh 91.6 0.23 5E-06 46.9 4.3 32 92-124 4-35 (308)
407 PF13241 NAD_binding_7: Putati 91.5 0.24 5.1E-06 38.7 3.7 33 90-123 7-39 (103)
408 TIGR01470 cysG_Nterm siroheme 91.1 0.32 6.9E-06 43.1 4.5 32 91-123 10-41 (205)
409 PF01488 Shikimate_DH: Shikima 90.9 0.4 8.8E-06 39.4 4.6 33 90-123 12-45 (135)
410 TIGR02354 thiF_fam2 thiamine b 90.8 0.37 8E-06 42.6 4.6 34 89-123 20-54 (200)
411 PRK06719 precorrin-2 dehydroge 90.7 0.4 8.6E-06 40.6 4.5 32 90-122 13-44 (157)
412 PF01262 AlaDh_PNT_C: Alanine 90.7 0.39 8.5E-06 41.0 4.5 33 91-124 21-53 (168)
413 PRK07819 3-hydroxybutyryl-CoA 90.6 0.37 7.9E-06 45.0 4.6 33 92-125 7-39 (286)
414 PRK08293 3-hydroxybutyryl-CoA 90.5 0.34 7.5E-06 45.2 4.4 32 92-124 5-36 (287)
415 PF02254 TrkA_N: TrkA-N domain 90.4 0.48 1E-05 37.4 4.5 31 93-124 1-31 (116)
416 PRK06718 precorrin-2 dehydroge 90.3 0.39 8.4E-06 42.5 4.3 33 90-123 10-42 (202)
417 TIGR00518 alaDH alanine dehydr 90.1 0.4 8.6E-06 46.6 4.5 34 90-124 167-200 (370)
418 PRK15116 sulfur acceptor prote 90.0 0.48 1E-05 43.8 4.7 35 89-124 29-64 (268)
419 PRK12921 2-dehydropantoate 2-r 89.9 0.39 8.4E-06 45.0 4.2 30 92-122 2-31 (305)
420 PRK06522 2-dehydropantoate 2-r 89.9 0.41 9E-06 44.7 4.4 31 92-123 2-32 (304)
421 PRK09260 3-hydroxybutyryl-CoA 89.7 0.45 9.7E-06 44.4 4.4 32 92-124 3-34 (288)
422 PRK06567 putative bifunctional 89.6 3.5 7.6E-05 44.9 11.3 58 183-240 652-726 (1028)
423 PF00899 ThiF: ThiF family; I 89.5 0.43 9.2E-06 39.1 3.6 33 91-124 3-36 (135)
424 cd05292 LDH_2 A subgroup of L- 89.1 0.55 1.2E-05 44.4 4.6 32 92-124 2-35 (308)
425 PRK07066 3-hydroxybutyryl-CoA 89.1 0.51 1.1E-05 44.9 4.3 32 92-124 9-40 (321)
426 COG0686 Ald Alanine dehydrogen 89.0 0.39 8.5E-06 44.9 3.3 34 89-123 167-200 (371)
427 PRK06035 3-hydroxyacyl-CoA deh 88.9 0.52 1.1E-05 44.0 4.2 32 92-124 5-36 (291)
428 PTZ00082 L-lactate dehydrogena 88.9 0.71 1.5E-05 43.9 5.2 34 91-125 7-41 (321)
429 PRK09424 pntA NAD(P) transhydr 88.9 0.48 1E-05 47.8 4.2 34 90-124 165-198 (509)
430 PRK07530 3-hydroxybutyryl-CoA 88.8 0.59 1.3E-05 43.7 4.5 33 91-124 5-37 (292)
431 PRK07688 thiamine/molybdopteri 88.7 0.65 1.4E-05 44.5 4.8 34 90-124 24-58 (339)
432 PRK12475 thiamine/molybdopteri 88.4 0.67 1.5E-05 44.4 4.7 34 90-124 24-58 (338)
433 PRK00066 ldh L-lactate dehydro 88.3 0.83 1.8E-05 43.3 5.2 34 90-124 6-41 (315)
434 cd00401 AdoHcyase S-adenosyl-L 88.2 0.66 1.4E-05 45.6 4.5 34 90-124 202-235 (413)
435 PRK05808 3-hydroxybutyryl-CoA 88.0 0.6 1.3E-05 43.3 4.0 32 92-124 5-36 (282)
436 COG1748 LYS9 Saccharopine dehy 87.9 0.7 1.5E-05 45.0 4.4 33 91-124 2-35 (389)
437 TIGR02356 adenyl_thiF thiazole 87.9 0.84 1.8E-05 40.3 4.7 34 90-124 21-55 (202)
438 PRK12549 shikimate 5-dehydroge 87.8 0.72 1.6E-05 43.1 4.4 32 91-123 128-160 (284)
439 PRK08229 2-dehydropantoate 2-r 87.7 0.68 1.5E-05 44.1 4.3 32 92-124 4-35 (341)
440 cd05311 NAD_bind_2_malic_enz N 87.7 0.75 1.6E-05 41.4 4.3 34 90-124 25-61 (226)
441 TIGR01763 MalateDH_bact malate 87.5 0.79 1.7E-05 43.3 4.5 32 92-124 3-35 (305)
442 PLN02545 3-hydroxybutyryl-CoA 87.2 0.95 2.1E-05 42.3 4.8 32 92-124 6-37 (295)
443 cd01483 E1_enzyme_family Super 87.0 1 2.3E-05 37.1 4.5 31 93-124 2-33 (143)
444 cd01487 E1_ThiF_like E1_ThiF_l 86.9 0.95 2.1E-05 39.0 4.3 31 93-124 2-33 (174)
445 PRK14620 NAD(P)H-dependent gly 86.6 0.91 2E-05 43.1 4.5 32 92-124 2-33 (326)
446 COG1004 Ugd Predicted UDP-gluc 86.6 0.84 1.8E-05 44.2 4.1 32 92-124 2-33 (414)
447 TIGR02731 phytoene_desat phyto 86.6 2.7 5.8E-05 41.7 8.0 61 170-240 213-274 (453)
448 cd01080 NAD_bind_m-THF_DH_Cycl 86.3 1.3 2.8E-05 38.0 4.8 34 89-123 43-77 (168)
449 PRK08644 thiamine biosynthesis 86.2 1.1 2.4E-05 39.8 4.5 35 89-124 27-62 (212)
450 PRK12548 shikimate 5-dehydroge 86.1 1 2.2E-05 42.2 4.3 33 91-124 127-160 (289)
451 PRK04148 hypothetical protein; 85.8 0.73 1.6E-05 37.9 2.9 32 91-124 18-49 (134)
452 PRK11064 wecC UDP-N-acetyl-D-m 85.8 1 2.2E-05 44.5 4.4 33 91-124 4-36 (415)
453 PRK02472 murD UDP-N-acetylmura 85.7 0.98 2.1E-05 44.8 4.3 32 92-124 7-38 (447)
454 PRK06130 3-hydroxybutyryl-CoA 85.7 1.1 2.3E-05 42.3 4.4 32 92-124 6-37 (311)
455 PRK14618 NAD(P)H-dependent gly 85.5 1.1 2.4E-05 42.6 4.4 32 92-124 6-37 (328)
456 PF13478 XdhC_C: XdhC Rossmann 85.2 1 2.2E-05 37.2 3.5 31 93-124 1-31 (136)
457 TIGR03026 NDP-sugDHase nucleot 84.9 1 2.2E-05 44.3 4.0 32 92-124 2-33 (411)
458 cd01339 LDH-like_MDH L-lactate 84.9 1.1 2.5E-05 42.0 4.1 31 93-124 1-32 (300)
459 PRK00094 gpsA NAD(P)H-dependen 84.8 1.3 2.9E-05 41.7 4.6 32 92-124 3-34 (325)
460 PRK14619 NAD(P)H-dependent gly 84.7 1.5 3.3E-05 41.3 4.9 33 91-124 5-37 (308)
461 cd01075 NAD_bind_Leu_Phe_Val_D 84.5 1.5 3.2E-05 38.7 4.5 32 91-123 29-60 (200)
462 cd05291 HicDH_like L-2-hydroxy 84.5 1.4 3.1E-05 41.5 4.6 32 92-124 2-35 (306)
463 TIGR03736 PRTRC_ThiF PRTRC sys 84.3 1.5 3.3E-05 39.9 4.5 35 90-124 11-55 (244)
464 cd01078 NAD_bind_H4MPT_DH NADP 84.1 1.7 3.7E-05 37.8 4.7 33 90-123 28-61 (194)
465 TIGR00936 ahcY adenosylhomocys 84.1 1.5 3.2E-05 43.1 4.6 34 90-124 195-228 (406)
466 PRK04308 murD UDP-N-acetylmura 84.0 1.8 3.9E-05 43.0 5.3 34 91-125 6-39 (445)
467 PRK05690 molybdopterin biosynt 84.0 1.6 3.5E-05 39.7 4.6 34 90-124 32-66 (245)
468 PF01593 Amino_oxidase: Flavin 83.9 1.8 3.9E-05 41.6 5.2 43 183-240 221-263 (450)
469 PRK06223 malate dehydrogenase; 83.7 1.6 3.5E-05 41.0 4.7 33 91-124 3-36 (307)
470 TIGR00561 pntA NAD(P) transhyd 83.7 1.5 3.3E-05 44.3 4.6 34 90-124 164-197 (511)
471 KOG1346 Programmed cell death 83.5 3.4 7.3E-05 40.4 6.6 126 88-242 176-311 (659)
472 KOG0405 Pyridine nucleotide-di 83.4 4.1 9E-05 38.9 7.0 97 91-241 190-286 (478)
473 PRK07502 cyclohexadienyl dehyd 83.4 1.7 3.8E-05 40.8 4.7 33 91-124 7-41 (307)
474 PRK07576 short chain dehydroge 83.4 1.8 4E-05 39.4 4.7 34 90-124 9-43 (264)
475 PLN02572 UDP-sulfoquinovose sy 82.9 3.2 6.9E-05 41.3 6.5 30 92-122 49-79 (442)
476 COG1063 Tdh Threonine dehydrog 82.8 1.6 3.5E-05 42.0 4.3 32 92-124 171-203 (350)
477 PRK08306 dipicolinate synthase 82.8 2 4.3E-05 40.4 4.8 34 90-124 152-185 (296)
478 PRK12550 shikimate 5-dehydroge 82.7 1.7 3.8E-05 40.2 4.3 33 91-124 123-156 (272)
479 PRK07774 short chain dehydroge 82.7 2.2 4.9E-05 38.1 5.0 33 91-124 7-40 (250)
480 TIGR02732 zeta_caro_desat caro 82.5 6.5 0.00014 39.5 8.7 58 171-241 220-283 (474)
481 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.5 1.7 3.7E-05 44.0 4.5 32 92-124 7-38 (503)
482 TIGR03467 HpnE squalene-associ 82.5 3.9 8.5E-05 39.6 7.0 52 174-240 201-252 (419)
483 PTZ00117 malate dehydrogenase; 82.3 2.1 4.6E-05 40.6 4.9 34 90-124 5-39 (319)
484 PRK03369 murD UDP-N-acetylmura 82.3 1.7 3.7E-05 43.8 4.4 32 91-123 13-44 (488)
485 PRK11730 fadB multifunctional 82.3 1.6 3.5E-05 46.2 4.4 32 92-124 315-346 (715)
486 PRK08268 3-hydroxy-acyl-CoA de 82.2 2.1 4.5E-05 43.4 5.0 32 92-124 9-40 (507)
487 PLN02353 probable UDP-glucose 82.2 1.8 3.9E-05 43.4 4.5 33 92-124 3-36 (473)
488 cd00755 YgdL_like Family of ac 82.1 2.2 4.7E-05 38.6 4.6 34 90-124 11-45 (231)
489 cd00757 ThiF_MoeB_HesA_family 82.1 2.2 4.7E-05 38.4 4.6 34 90-124 21-55 (228)
490 PRK10669 putative cation:proto 82.0 1.6 3.6E-05 44.7 4.2 34 90-124 417-450 (558)
491 COG1893 ApbA Ketopantoate redu 81.9 1.7 3.7E-05 41.0 4.0 32 92-124 2-33 (307)
492 PRK05476 S-adenosyl-L-homocyst 81.9 2 4.3E-05 42.5 4.5 34 90-124 212-245 (425)
493 KOG4716 Thioredoxin reductase 81.9 3 6.6E-05 39.7 5.5 100 92-242 200-300 (503)
494 PLN02520 bifunctional 3-dehydr 81.9 1.8 3.9E-05 44.1 4.4 32 91-123 380-411 (529)
495 PRK07417 arogenate dehydrogena 81.9 1.8 4E-05 40.1 4.2 32 92-124 2-33 (279)
496 TIGR02853 spore_dpaA dipicolin 81.9 2 4.3E-05 40.2 4.4 34 90-124 151-184 (287)
497 PRK14027 quinate/shikimate deh 81.8 2 4.4E-05 40.0 4.4 32 91-123 128-160 (283)
498 TIGR00507 aroE shikimate 5-deh 81.7 2.1 4.5E-05 39.5 4.5 32 91-123 118-149 (270)
499 TIGR02437 FadB fatty oxidation 81.6 1.8 3.9E-05 45.9 4.4 32 92-124 315-346 (714)
500 PF00056 Ldh_1_N: lactate/mala 81.5 2.7 6E-05 34.7 4.7 33 92-124 2-36 (141)
No 1
>PLN02661 Putative thiazole synthesis
Probab=100.00 E-value=2.1e-54 Score=405.70 Aligned_cols=350 Identities=81% Similarity=1.189 Sum_probs=299.0
Q ss_pred ccccccccccccccCccccc--ccccCCCCCCcccccCccccCCCCCCCCcccCCCCCCCCCCccCCCccchhhHHHHHH
Q 018414 3 AMASTAFAPSVSSTTNKLFD--SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRR 80 (356)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
++++..++++......++.. ++|++.++.+........ .+ .........+.++|||+.|+|.+++|..+++.|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~f~~~~e~~is~~i~~~ 82 (357)
T PLN02661 5 AAASATSLSSSRELKSSFASSSSSFAGVRLVTSVRAPLAD-AS-APARSSSSSSTAPYDLNNFKFAPIKESIVSREMTRR 82 (357)
T ss_pred HHhHhhhhccccccccccccccccccCccccccccCCccc-cc-cccccccCCCCCCCccccccceechhhHhhccchHh
Confidence 34444444444444445554 788888888665433311 11 122233335789999999999999999999999999
Q ss_pred HhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcccc
Q 018414 81 YMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ 160 (356)
Q Consensus 81 ~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~ 160 (356)
|+.++.+..++||+|||+|++|+++|+.|++++|++|+||||...+||+.|.++.++..++.+....++|+++|++|+..
T Consensus 83 ~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~ 162 (357)
T PLN02661 83 YMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQ 162 (357)
T ss_pred HhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccC
Confidence 99999888899999999999999999999975589999999999999999999988887777777888999999999877
Q ss_pred CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414 161 DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg 240 (356)
++|+...+...+...|++++.++.|++++.++.+++++.+++++.|+.++|..+..++..+.+.+...|+||.||+|||+
T Consensus 163 dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 163 ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 77777778888888999988877899999999999999999999999998866555554443345678999999999999
Q ss_pred CCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccceeeeehHHHHHH
Q 018414 241 DGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHL 320 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l 320 (356)
.++.++.+++++..+|+..++|++.++|++..|+.+++.++|++||+|+.||++..++|.+||||+||.|++||++++++
T Consensus 243 ~g~~ga~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~ 322 (357)
T PLN02661 243 DGPFGATGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHL 322 (357)
T ss_pred CCcchhhhhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHH
Confidence 99999999999998999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCcccccCCchhhhhccccccccC
Q 018414 321 ALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355 (356)
Q Consensus 321 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (356)
|+++|+.+++.|++...++|||+|| +++++|++|
T Consensus 323 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 356 (357)
T PLN02661 323 ALKALGLPNALDGTYKPNLHPELVL-AADDDETAD 356 (357)
T ss_pred HHHHHccchhhcchhhhccchhhhh-ccCcccccc
Confidence 9999999999999988899999999 888889886
No 2
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=100.00 E-value=1.4e-52 Score=358.44 Aligned_cols=322 Identities=64% Similarity=1.000 Sum_probs=292.3
Q ss_pred CcccccccccccccccCcccccccccCCCCCCcccccCccccCCCCCCCCcccCCCCCCCCCCccCCCccchhhHHHHHH
Q 018414 1 MAAMASTAFAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRR 80 (356)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
|+|.+++.+.|++++. ++++++|+++.+.+...+..-+ ...-..||.+|+|+|++|++++|+|++|
T Consensus 1 m~Ata~~ts~sa~k~~--~~~d~~~H~s~~~s~p~~~~l~------------~~~~s~d~s~F~FaPIrEStVSRaMTrR 66 (328)
T KOG2960|consen 1 MSATATATSTSASKPQ--RLFDSQLHGSALNSTPVTHCLS------------DIVKSEDWSDFKFAPIRESTVSRAMTRR 66 (328)
T ss_pred CCccceeccccccCcc--cchhhhhhhhhhccCccccccc------------ccccccccccccccchhHHHHHHHHHHH
Confidence 6677777777776665 7888999988766433221111 1122346778999999999999999999
Q ss_pred HhhhcccCCcccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccc
Q 018414 81 YMTDMITYADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDE 159 (356)
Q Consensus 81 ~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~ 159 (356)
|+.++.+..+.||+|||+|.+||++||..++ +|.++|.|||..-.+||+.|.+|++++.++.+.+..-+|+++|++|+.
T Consensus 67 Yf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpYed 146 (328)
T KOG2960|consen 67 YFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPYED 146 (328)
T ss_pred HHHHHHhhhccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCccc
Confidence 9999998888999999999999999999995 689999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-----eEEEEEEcceeeecccCCCCCCCCeEEEcCEE
Q 018414 160 QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-----~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~V 234 (356)
.++|.+.+|...|...++.+.+..+|++++..+.|++++...+ ++.||.++|.++..|+.++.|.+...+++..|
T Consensus 147 egdYVVVKHAALFtSTvmsk~LalPNVKLFNAtavEDLivk~g~~g~~rvaGVVTNWtLV~qnHgtQsCMDPNviea~~v 226 (328)
T KOG2960|consen 147 EGDYVVVKHAALFTSTVMSKVLALPNVKLFNATAVEDLIVKPGEKGEVRVAGVVTNWTLVTQNHGTQSCMDPNVIEAAVV 226 (328)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhcCCcceeechhhhhhhhcccCcCCceEEEEEEeeeEEeeeccCccccCCCCeeeEEEE
Confidence 9999999999999999999999999999999999999987632 68899999999999999999999999999999
Q ss_pred EEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccceeeeeh
Q 018414 235 VSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISG 314 (356)
Q Consensus 235 I~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG 314 (356)
|-+||+.|++|+.+++++.+++....+++++++++++.++.++.+++|++||+++.||++.+++|.+||||+||.|++||
T Consensus 227 vS~tGHDGPFGAfcvKRl~si~~~~~l~gMk~LDMN~AEd~iV~~trevvpgMiv~GMEvaE~DGanRMGPTFGaMm~SG 306 (328)
T KOG2960|consen 227 VSTTGHDGPFGAFCVKRLVSIDQNQKLGGMKGLDMNHAEDDIVIHTREVVPGMIVAGMEVAELDGANRMGPTFGAMMLSG 306 (328)
T ss_pred EEccCCCCCchhHHHHHHhhhhhhhhcCCCccccccchhhhhhhhhhhccCceEEeeeeeeeccCCcccCcchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCCccc
Q 018414 315 QKAAHLALKSLGQPNALDGTYV 336 (356)
Q Consensus 315 ~~~~~l~l~~~~~~~~~~~~~~ 336 (356)
.++++.+|+.+.-|++.|++++
T Consensus 307 ~kAaq~aLk~f~~~~aid~~~v 328 (328)
T KOG2960|consen 307 VKAAQQALKHFAAPNAIDGTLV 328 (328)
T ss_pred hhHHHHHHHHhcCccccccccC
Confidence 9999999999999999998763
No 3
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=305.84 Aligned_cols=259 Identities=43% Similarity=0.761 Sum_probs=236.4
Q ss_pred CCccCCCccchhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhh
Q 018414 62 TFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMV 141 (356)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~ 141 (356)
.+++.++.|.++++.|+++|+.+.....+.||+|||+||+||+||++|+++ |+||+|+||+-.+||+.|.+|+++++++
T Consensus 2 ~~~f~~~~E~~itraI~~~~~~~l~~~~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ls~GGG~w~GGmlf~~iV 80 (262)
T COG1635 2 SFKFAPLREVKITRAITERYFEDLLDYLESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKLSFGGGIWGGGMLFNKIV 80 (262)
T ss_pred CccccchhhHHHHHHHHHHHHHHHHhhhhccEEEECcCcchHHHHHHHHhC-CceEEEEEeecccCCcccccccccceee
Confidence 467888999999999999999987777789999999999999999999999 9999999999999999999999999999
Q ss_pred ccchHHHHHHHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCC
Q 018414 142 VRKPAHIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDT 220 (356)
Q Consensus 142 ~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~ 220 (356)
.+.+..+.|+++|++|...+++++..++.++...|..++. +.|++++..+.|++++..++ +|.|+.++|..++..+
T Consensus 81 v~~~a~~iL~e~gI~ye~~e~g~~v~ds~e~~skl~~~a~-~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~-- 157 (262)
T COG1635 81 VREEADEILDEFGIRYEEEEDGYYVADSAEFASKLAARAL-DAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAG-- 157 (262)
T ss_pred ecchHHHHHHHhCCcceecCCceEEecHHHHHHHHHHHHH-hcCceeeecceEEEEEEecCCceEEEEEecchhhhcc--
Confidence 9999999999999999998887778889999999999887 67999999999999999887 8999999998776654
Q ss_pred CCCCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCC
Q 018414 221 QSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGA 300 (356)
Q Consensus 221 ~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~ 300 (356)
.|.|+.+++|++||.|||+.+...+...++....+ ..++++.++|.+..++.++..+++++||+++.||+++.+.|.
T Consensus 158 -lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~~l~--~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~ 234 (262)
T COG1635 158 -LHVDPLTIRAKAVVDATGHDAEVVSFLAKRIPELG--IEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGL 234 (262)
T ss_pred -cccCcceeeEEEEEeCCCCchHHHHHHHHhccccc--cccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCC
Confidence 46678999999999999999876655555554433 378999999999999999999999999999999999999999
Q ss_pred cccCCccceeeeehHHHHHHHHHHhCC
Q 018414 301 PRMGPTFGAMMISGQKAAHLALKSLGQ 327 (356)
Q Consensus 301 ~~~~~~~g~~l~sG~~~~~l~l~~~~~ 327 (356)
+||||+||+|++||++++++++++|+.
T Consensus 235 pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 235 PRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred cccCchhhhhhhchHHHHHHHHHHhhc
Confidence 999999999999999999999999864
No 4
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=100.00 E-value=2.5e-38 Score=289.55 Aligned_cols=251 Identities=42% Similarity=0.728 Sum_probs=213.0
Q ss_pred chhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHH
Q 018414 71 SIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFL 150 (356)
Q Consensus 71 ~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l 150 (356)
..+++.|+++|+.++....+|||+|||||++|+++|+.|+++ |++|+||||+..+|++.|.++..+..........+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l 80 (254)
T TIGR00292 2 SKISRAIVERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEIL 80 (254)
T ss_pred chhHHHHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCccccCCCcceecccccchHHHHH
Confidence 457899999999998888899999999999999999999999 9999999999999999998888777776677778899
Q ss_pred HHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC--eEEEEEEcceeeecccCCCCCCCCeE
Q 018414 151 DELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG--RVGGVVTNWALVSMNHDTQSCMDPNV 228 (356)
Q Consensus 151 ~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~--~v~gv~~~~~~~~~~~~~~~~g~~~~ 228 (356)
+++|++|......+...+...+.+.|++++. +.|+++++++.++++..+++ ++.|+.++|..+..++. +.+..+
T Consensus 81 ~~~gi~~~~~~~g~~~~~~~el~~~L~~~a~-e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~---~~d~~~ 156 (254)
T TIGR00292 81 DEFGIRYEDEGDGYVVADSAEFISTLASKAL-QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGL---HVDPLT 156 (254)
T ss_pred HHCCCCeeeccCceEEeeHHHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCC---CCCCEE
Confidence 9999998776543444566788899998887 57999999999999998877 69999988754333221 224678
Q ss_pred EEcCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccc
Q 018414 229 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFG 308 (356)
Q Consensus 229 i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g 308 (356)
++|+.||+|||+.+.+.+...+.+......+.++++.++|.+..|+.++..++|++||+|+.||+++..+|.+||||.||
T Consensus 157 i~Ak~VVdATG~~a~v~~~l~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg 236 (254)
T TIGR00292 157 QRSRVVVDATGHDAEIVAVCAKKIVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFG 236 (254)
T ss_pred EEcCEEEEeecCCchHHHHHHHHcCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHH
Confidence 99999999999998766554444432222446789999999999999999999999999999999999999999999999
Q ss_pred eeeeehHHHHHHHHHHhC
Q 018414 309 AMMISGQKAAHLALKSLG 326 (356)
Q Consensus 309 ~~l~sG~~~~~l~l~~~~ 326 (356)
.|++||.+++++++++|+
T Consensus 237 ~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 237 GMLLSGKHVAEQILEKLK 254 (254)
T ss_pred HHHHhhHHHHHHHHHHhC
Confidence 999999999999999874
No 5
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=100.00 E-value=5e-37 Score=281.71 Aligned_cols=254 Identities=37% Similarity=0.663 Sum_probs=211.2
Q ss_pred CCccchhhHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH
Q 018414 67 PIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA 146 (356)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~ 146 (356)
++.|..+++.|.++|+.++....++||+|||||++|++||+.|++. |++|+|+||...+|++.|.++.++.........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~ 80 (257)
T PRK04176 2 ELDEVKITRAIVEEYFEKLLDYLEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEA 80 (257)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccCccccccccchHHH
Confidence 3567889999999999988888889999999999999999999999 999999999999998888887777666666677
Q ss_pred HHHHHHhCCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCC
Q 018414 147 HIFLDELGIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMD 225 (356)
Q Consensus 147 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~ 225 (356)
.++++++|++|.....-.+..+...+...|.+++. +.|++++++++|+++..+++ ++.|+.++|..+..+. .+.+
T Consensus 81 ~~~l~~~gv~~~~~~~g~~~vd~~~l~~~L~~~A~-~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g---~~~~ 156 (257)
T PRK04176 81 DEILDEFGIRYKEVEDGLYVADSVEAAAKLAAAAI-DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG---LHVD 156 (257)
T ss_pred HHHHHHCCCCceeecCcceeccHHHHHHHHHHHHH-HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC---CCCC
Confidence 88999999998764322223456788888888886 67999999999999988765 8999988763222111 1224
Q ss_pred CeEEEcCEEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCC
Q 018414 226 PNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGP 305 (356)
Q Consensus 226 ~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~ 305 (356)
..+++||.||+|||+.+...+...+.... ....++++.++|.+..++.++..+++++||+|+.||+++..+|.+||||
T Consensus 157 ~~~i~Ak~VI~ATG~~a~v~~~l~~~~~~--~~~~~~g~~~~~~~~~e~~v~~~t~~~~~g~~~~gm~~~~~~~~~rmg~ 234 (257)
T PRK04176 157 PLTIEAKAVVDATGHDAEVVSVLARKGPE--LGIEVPGEKSMWAERGEKLVVENTGEVYPGLYVAGMAANAVHGLPRMGP 234 (257)
T ss_pred cEEEEcCEEEEEeCCCcHHHHHHHHHcCC--cccccCCccccccCchHHHHHhcCCeEcCCEEEeehhhhhhcCCCccCc
Confidence 57899999999999988765443333332 2346789999999999999999999999999999999999999999999
Q ss_pred ccceeeeehHHHHHHHHHHhCC
Q 018414 306 TFGAMMISGQKAAHLALKSLGQ 327 (356)
Q Consensus 306 ~~g~~l~sG~~~~~l~l~~~~~ 327 (356)
.||.|++||.+++++++++|+.
T Consensus 235 ~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 235 IFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred hhHhHHHhHHHHHHHHHHHhhc
Confidence 9999999999999999999975
No 6
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=100.00 E-value=1.1e-36 Score=264.36 Aligned_cols=229 Identities=44% Similarity=0.742 Sum_probs=183.3
Q ss_pred hHHHHHHHhhhcccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHh
Q 018414 74 SREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL 153 (356)
Q Consensus 74 ~~~~~~~~~~~m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~ 153 (356)
+|.|.++|+.++.+..++||+|||+||+||+||+.|+++ |+||+++|+...+||+.|.+|.++++++.+.+....|+++
T Consensus 1 sraI~~~~~~~l~~~~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el 79 (230)
T PF01946_consen 1 SRAIIERYFEDLYDYLEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL 79 (230)
T ss_dssp HHHHHHHHHHHHHHHTEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhhccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC
Confidence 367889999988888899999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414 154 GIDYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 232 (356)
Q Consensus 154 G~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak 232 (356)
|++|...+++.+..++.++...|..++. +.|++++..+.|+++...+ ++|.|+.++|..+.+.. .+.|+.+++||
T Consensus 80 gi~y~~~~~g~~v~d~~~~~s~L~s~a~-~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~g---lHvDPl~i~ak 155 (230)
T PF01946_consen 80 GIPYEEYGDGYYVADSVEFTSTLASKAI-DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAG---LHVDPLTIRAK 155 (230)
T ss_dssp T---EE-SSEEEES-HHHHHHHHHHHHH-TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT-----T-B-EEEEES
T ss_pred CceeEEeCCeEEEEcHHHHHHHHHHHHh-cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhh---cCCCcceEEEe
Confidence 9999988888888899999999999988 5899999999999999887 89999999998776652 23467899999
Q ss_pred EEEEcCCCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCcc
Q 018414 233 VVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTF 307 (356)
Q Consensus 233 ~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~ 307 (356)
.||.|||+.+.+.+...++.........++++.++|.+..|+.++..++|++||+++.||+++..+|.+||||.|
T Consensus 156 ~ViDaTGHda~v~~~~~kk~~~~~~~~~v~Ge~~m~~~~~E~~vV~~T~eV~PGL~v~GMa~~av~G~~RMGPiF 230 (230)
T PF01946_consen 156 VVIDATGHDAEVVRVLAKKLKLLTPTGKVPGEKSMWAERGEDLVVENTREVYPGLYVAGMAANAVDGGPRMGPIF 230 (230)
T ss_dssp EEEE---SSSSSTSHHHHHHHHTTSSS-----EEB-HHHHHHHHHHCEEEEETTEEE-THHHHHHHT-EB-SSB-
T ss_pred EEEeCCCCchHHHHHHHHHhhhcccccccCCCCCcCcchhHHHHHHhhccccCCEEEechhhHhhcCCCCCCCCC
Confidence 999999999999988888877666566789999999999999999999999999999999999999999999987
No 7
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.88 E-value=4.3e-22 Score=193.66 Aligned_cols=211 Identities=21% Similarity=0.357 Sum_probs=135.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC-------cccc-CC----------------ccchhhhc---c
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-------GAWL-GG----------------QLFSAMVV---R 143 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg-------~~~~-~g----------------~~~~~~~~---~ 143 (356)
|||+|||||+||++||+.|++. |.+|+|+||+..+|. +.++ .. ......+. .
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~-g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~ 79 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK-GARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSP 79 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-H
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCH
Confidence 7999999999999999999999 999999999988752 1111 00 00111111 1
Q ss_pred chHHHHHHHhCCCccccC-C--eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCC
Q 018414 144 KPAHIFLDELGIDYDEQD-N--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 220 (356)
Q Consensus 144 ~~~~~~l~~~G~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~ 220 (356)
...+.|+.++|+++...+ . ||....+..+.+.|++.+. +.||+++++++|.++..+++.+..|.+.
T Consensus 80 ~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~~f~v~~~---------- 148 (409)
T PF03486_consen 80 EDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELK-RLGVEIHFNTRVKSIEKKEDGVFGVKTK---------- 148 (409)
T ss_dssp HHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHH-HHT-EEE-S--EEEEEEETTEEEEEEET----------
T ss_pred HHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHH-HcCCEEEeCCEeeeeeecCCceeEeecc----------
Confidence 135689999999886543 2 4445567888899988886 6799999999999999999988888873
Q ss_pred CCCCCCeEEEcCEEEEcCCCCCC--CCC--ccchhhhccCc--cccccccccccccccccee--eeccccccCceeEece
Q 018414 221 QSCMDPNVMEAKVVVSSCGHDGP--FGA--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAI--VRLTREVVPGMIVTGM 292 (356)
Q Consensus 221 ~~~g~~~~i~Ak~VI~AtGg~~~--~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~--~~~~~e~~~g~~~~~~ 292 (356)
+...++||.||+|+||.+. .|. +++++++.+|| .+++|.++++.++ ++++ ..+ .|+.+.+.
T Consensus 149 ----~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i~~~~PaL~~l~~~--~~~~~~~~l-----~Gv~~~~~ 217 (409)
T PF03486_consen 149 ----NGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTITPPYPALVPLKCD--EPWLFFKEL-----SGVRLKAV 217 (409)
T ss_dssp ----TTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--EEEEEEES--EE----HHHHHTGGG-----TT-EEEEE
T ss_pred ----CcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcEecCCCccCCeeec--chhhhhhhh-----CCCceeeE
Confidence 1478999999999998662 232 78999999999 8899999995554 4444 455 89998876
Q ss_pred EEEEecCCcccCCccceee-----eehHHHHHH---HHHHhC
Q 018414 293 EVAEIDGAPRMGPTFGAMM-----ISGQKAAHL---ALKSLG 326 (356)
Q Consensus 293 ~~~~~~g~~~~~~~~g~~l-----~sG~~~~~l---~l~~~~ 326 (356)
...+ ++ ......+|+++ +|||.++++ +.+.+.
T Consensus 218 ~~~~-~~-~~~~~~~GellfT~~GiSGp~il~lS~~~~~~l~ 257 (409)
T PF03486_consen 218 ISLL-DG-KKKASETGELLFTHYGISGPAILQLSRFIARALN 257 (409)
T ss_dssp EEEE--E-CTCEEEEEEEEE-SSEEESHHHHHHTTTHHHHHH
T ss_pred EEEe-cc-CCccceeeeEEEECCccchHHHHHHHHHHHHHHH
Confidence 5555 33 44556789998 999999998 444444
No 8
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.86 E-value=9e-21 Score=178.22 Aligned_cols=205 Identities=17% Similarity=0.256 Sum_probs=152.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC-------ccccCC--ccchhhh---------------c--c
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-------GAWLGG--QLFSAMV---------------V--R 143 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg-------~~~~~g--~~~~~~~---------------~--~ 143 (356)
.+||+|||||+||++||..++++ |.+|+|+|+++.+|. +.+|-- ..+..++ . .
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence 58999999999999999999999 999999999987752 222210 0111111 1 1
Q ss_pred chHHHHHHHhCCCccccCC---eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCC
Q 018414 144 KPAHIFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 220 (356)
Q Consensus 144 ~~~~~~l~~~G~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~ 220 (356)
...+.|++.+|+++..... |+..+.+..+.+.|+.++. +.||+++++++|.++..++. ...+.+.+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~-~~gV~i~~~~~v~~v~~~~~-~f~l~t~~--------- 150 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELE-ALGVTIRTRSRVSSVEKDDS-GFRLDTSS--------- 150 (408)
T ss_pred HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHH-HcCcEEEecceEEeEEecCc-eEEEEcCC---------
Confidence 2457899999999877643 4555778999999999997 78999999999999998773 33344432
Q ss_pred CCCCCCeEEEcCEEEEcCCCCC--CCCC--ccchhhhccCc--ccccccccccccccccceeeeccccccCceeEeceEE
Q 018414 221 QSCMDPNVMEAKVVVSSCGHDG--PFGA--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEV 294 (356)
Q Consensus 221 ~~~g~~~~i~Ak~VI~AtGg~~--~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~ 294 (356)
..+++|+.+|+|+||.+ .+|. .|++++..+|| .++.|+++++.++ +..+-. ..|+.+....+
T Consensus 151 -----g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~~rpalvpft~~--~~~~~~-----l~gls~~~v~~ 218 (408)
T COG2081 151 -----GETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITPLRPALVPFTLD--ESFLER-----LAGLSLKSVPL 218 (408)
T ss_pred -----CCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCccccCccccCCccCC--HHHHHH-----hcCCcccceEE
Confidence 34899999999999766 3444 68999999999 8889999996665 322222 38888888887
Q ss_pred EEecCCcccCCccceee-----eehHHHHHH
Q 018414 295 AEIDGAPRMGPTFGAMM-----ISGQKAAHL 320 (356)
Q Consensus 295 ~~~~g~~~~~~~~g~~l-----~sG~~~~~l 320 (356)
.+..+.. ...-|+|+ +|||+++++
T Consensus 219 ~v~~~~g--~~~~g~~LfTh~GiSGPavl~~ 247 (408)
T COG2081 219 SVTAGKG--ITFQGDLLFTHRGLSGPAVLQL 247 (408)
T ss_pred EEecCCC--ceeecceEEEecCCcHHHHHHH
Confidence 7765531 12226777 999999987
No 9
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.65 E-value=3.2e-15 Score=146.13 Aligned_cols=202 Identities=20% Similarity=0.370 Sum_probs=136.9
Q ss_pred EEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC---c------cchh---hh-----------c---cchHH
Q 018414 94 VVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG---Q------LFSA---MV-----------V---RKPAH 147 (356)
Q Consensus 94 vIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g---~------~~~~---~~-----------~---~~~~~ 147 (356)
+|||||++|++||+.|+++ |++|+|+||+..+|+.....| + .... .. . .....
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHH
Confidence 6999999999999999999 999999999987765421111 0 0000 00 0 11235
Q ss_pred HHHHHhCCCccccCC---eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCC
Q 018414 148 IFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM 224 (356)
Q Consensus 148 ~~l~~~G~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g 224 (356)
+|+.++|+++..... |+.......+.+.|.+.+. +.|+++++++.|+++..+++. ..+.+.
T Consensus 80 ~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~-~~gv~i~~~~~V~~i~~~~~~-~~v~~~-------------- 143 (400)
T TIGR00275 80 DFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELK-ELGVEILTNSKVKSIKKDDNG-FGVETS-------------- 143 (400)
T ss_pred HHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEecCCe-EEEEEC--------------
Confidence 678888887765432 2333456778888888776 679999999999999776553 334432
Q ss_pred CCeEEEcCEEEEcCCCCCC--CCC--ccchhhhccCc--ccccccccccccccccceeeeccccccCceeEeceEEEEec
Q 018414 225 DPNVMEAKVVVSSCGHDGP--FGA--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEID 298 (356)
Q Consensus 225 ~~~~i~Ak~VI~AtGg~~~--~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~ 298 (356)
..++.+|.||+|+|+.+. .+. .+++.+...|+ .++.|.++++... +++...+ .|+.+.+... +..
T Consensus 144 -~~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~~~~P~l~~l~~~--~~~~~~l-----~Gv~~~~~~~-~~~ 214 (400)
T TIGR00275 144 -GGEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTIVPPVPALVPLTLD--ESFLKEL-----SGISLDGVVL-SLV 214 (400)
T ss_pred -CcEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEecccceEeEEEeC--CcccccC-----CCCcCccEEE-Eec
Confidence 246899999999998652 222 67888888888 5678888885544 3333334 6777655422 222
Q ss_pred CCcccCCccceee-----eehHHHHHHH
Q 018414 299 GAPRMGPTFGAMM-----ISGQKAAHLA 321 (356)
Q Consensus 299 g~~~~~~~~g~~l-----~sG~~~~~l~ 321 (356)
..++....+|+++ +|||.++++-
T Consensus 215 ~~~~~~~~~g~llft~~gisG~~vl~~s 242 (400)
T TIGR00275 215 NGKKVLEEFGDLLFTHFGLSGPAILDLS 242 (400)
T ss_pred CCcEEEeecccEEEECCCcCHHHHHHHH
Confidence 2244445678888 8999999973
No 10
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.62 E-value=1.8e-14 Score=148.13 Aligned_cols=146 Identities=23% Similarity=0.275 Sum_probs=103.4
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc---------------h--------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF---------------S-------------- 138 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~---------------~-------------- 138 (356)
.++||||||+|.||++||+.+++. |.+|+||||....++++ +.+|.+. .
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~-G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~l 127 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDA 127 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc-CCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence 358999999999999999999999 99999999987655433 1111110 0
Q ss_pred -hhhc-c-chHHHHHHHhCCCccccCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEc
Q 018414 139 -AMVV-R-KPAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN 190 (356)
Q Consensus 139 -~~~~-~-~~~~~~l~~~G~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~ 190 (356)
..+. + ...++||+++|++|+...+ +. ... ....+...|++.+. +.|++++.
T Consensus 128 v~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~ 206 (635)
T PLN00128 128 IQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAM-KHNTQFFV 206 (635)
T ss_pred HHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHH-hCCCEEEE
Confidence 0011 1 1356899999999975321 10 000 13457788888776 56999999
Q ss_pred CeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 191 AVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 191 ~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
++.+++|+.+ +++|.|+...+ .. +++...+.||.||+||||++...
T Consensus 207 ~~~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~g~~~ 253 (635)
T PLN00128 207 EYFALDLIMDSDGACQGVIALN------ME---DGTLHRFRAHSTILATGGYGRAY 253 (635)
T ss_pred eeEEEEEEEcCCCEEEEEEEEE------cC---CCeEEEEEcCeEEECCCCCcccc
Confidence 9999999887 68999987632 11 12356899999999999998543
No 11
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.60 E-value=1.6e-14 Score=147.09 Aligned_cols=145 Identities=23% Similarity=0.362 Sum_probs=102.9
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-----------------hhhh---------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-----------------SAMV--------- 141 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-----------------~~~~--------- 141 (356)
.++||||||+|.||++||+.+++. |.+|+||||....++++ +.+|.+. ...+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~-G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~ 82 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA-GFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQ 82 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC-CCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCH
Confidence 358999999999999999999999 99999999986554432 2222111 0000
Q ss_pred ------c-c-chHHHHHHHhCCCccccCC------------eEEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEE
Q 018414 142 ------V-R-KPAHIFLDELGIDYDEQDN------------YVVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAED 196 (356)
Q Consensus 142 ------~-~-~~~~~~l~~~G~~~~~~~~------------~~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~ 196 (356)
. + ...++||+++|++|+...+ ++... ....+...|++.+. +.||++++++.+++
T Consensus 83 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~~~~ 161 (566)
T PRK06452 83 DAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTS-GLNVDFYNEWFSLD 161 (566)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHH-hCCCEEEeCcEEEE
Confidence 0 0 1346899999999965321 11111 13456778887776 46999999999999
Q ss_pred EEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 197 LIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 197 i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
|+.++++|.|+.+.+ .++ ++...++||.||+||||++.+
T Consensus 162 Li~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 162 LVTDNKKVVGIVAMQ------MKT---LTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred EEEECCEEEEEEEEE------CCC---CeEEEEEeCeEEECCCccccc
Confidence 999999999998742 111 134678999999999998843
No 12
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.60 E-value=1.7e-14 Score=148.02 Aligned_cols=146 Identities=23% Similarity=0.257 Sum_probs=103.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc---------------hh-------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF---------------SA------------- 139 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~---------------~~------------- 139 (356)
.++||||||+|.||++||+.+++. |.+|+||||....++++ +.+|.+. ..
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVEL-GYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 468999999999999999999999 99999999987655443 2212110 00
Q ss_pred --hhcc--chHHHHHHHhCCCccccCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEc
Q 018414 140 --MVVR--KPAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFN 190 (356)
Q Consensus 140 --~~~~--~~~~~~l~~~G~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~ 190 (356)
.+.+ ...++||+++|++|+...+ +. ... ....+...|++.+. +.|+++++
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~-~~gv~i~~ 185 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSL-KYDCNFFI 185 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHH-hCCCEEEe
Confidence 0011 1356899999999965421 11 000 13467788888776 57999999
Q ss_pred CeEEEEEEE-eCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 191 AVAAEDLIV-KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 191 ~~~v~~i~~-~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
++.+++|+. ++++|.|+...+ .. +++...+.||.||+||||++...
T Consensus 186 ~~~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~~~ 232 (617)
T PTZ00139 186 EYFALDLIMDEDGECRGVIAMS------ME---DGSIHRFRAHYTVIATGGYGRAY 232 (617)
T ss_pred ceEEEEEEECCCCEEEEEEEEE------CC---CCeEEEEECCcEEEeCCCCcccc
Confidence 999999998 678999987631 11 12356899999999999988543
No 13
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.59 E-value=2.3e-14 Score=141.48 Aligned_cols=141 Identities=19% Similarity=0.303 Sum_probs=100.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccc------------hh----------------h
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF------------SA----------------M 140 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~------------~~----------------~ 140 (356)
++||||||+|.||++||+.++ . |.+|+||||....++++. .+|.+. .. +
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~-G~~V~lleK~~~~gg~s~~a~ggi~~~~~~d~~~~~~~d~~~~g~~~~d~~lv~~~ 81 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-K-DLKILMVSKGKLNECNTYLAQGGISVARNKDDITSFVEDTLKAGQYENNLEAVKIL 81 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-c-CCCEEEEecCCCCCCchHHHhHhheeCCCCCCHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 589999999999999999984 6 999999999987665532 121110 00 0
Q ss_pred hcc-chHHHHHHHhCCCccccCC---eE--------EE-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCe
Q 018414 141 VVR-KPAHIFLDELGIDYDEQDN---YV--------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR 203 (356)
Q Consensus 141 ~~~-~~~~~~l~~~G~~~~~~~~---~~--------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~ 203 (356)
+.+ ...++||.++|++|+.... |. .. .....+.+.|++.+.++.|+++++++.+++|+.++++
T Consensus 82 ~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~g~~~~~r~~~~~~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~ 161 (433)
T PRK06175 82 ANESIENINKLIDMGLNFDKDEKELSYTKEGAHSVNRIVHFKDNTGKKVEKILLKKVKKRKNITIIENCYLVDIIENDNT 161 (433)
T ss_pred HHHHHHHHHHHHHcCCccccCCCceeeeccCccccCeEEecCCCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCE
Confidence 111 1356899999999865421 10 00 0234677888888775679999999999999988888
Q ss_pred EEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 204 VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 204 v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
|.|+.... +++...++||.||+|||+++.
T Consensus 162 v~Gv~~~~-----------~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 162 CIGAICLK-----------DNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred EEEEEEEE-----------CCcEEEEEcCeEEEccCcccc
Confidence 98876531 112357999999999999774
No 14
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.59 E-value=3e-14 Score=145.64 Aligned_cols=144 Identities=20% Similarity=0.313 Sum_probs=102.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc---------------h---------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF---------------S--------------- 138 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~---------------~--------------- 138 (356)
++||||||+|.|||+||+.+++. |.+|+||||....++++ +.+|.+. .
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v 85 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQS-GQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI 85 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 58999999999999999999999 99999999986554433 2222110 0
Q ss_pred hhhc-c-chHHHHHHHhCCCccccCC--eE-----------------EEe-----chHHHHHHHHHHHHcCCCcEEEcCe
Q 018414 139 AMVV-R-KPAHIFLDELGIDYDEQDN--YV-----------------VIK-----HAALFTSTIMSKLLARPNVKLFNAV 192 (356)
Q Consensus 139 ~~~~-~-~~~~~~l~~~G~~~~~~~~--~~-----------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~ 192 (356)
..+. + ...++||+++|++|+...+ +. ... ....+...|++.+. +.|+++++++
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~ 164 (588)
T PRK08958 86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNL-KNHTTIFSEW 164 (588)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhh-hcCCEEEeCc
Confidence 0001 1 1356899999999965321 11 000 23567778887776 6799999999
Q ss_pred EEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 193 AAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 193 ~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
.+++|+.+ +++|.|+...+ .. +++...++||.||+||||++..
T Consensus 165 ~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~~~~ 208 (588)
T PRK08958 165 YALDLVKNQDGAVVGCTAIC------IE---TGEVVYFKARATVLATGGAGRI 208 (588)
T ss_pred EEEEEEECCCCEEEEEEEEE------cC---CCcEEEEEcCeEEECCCCcccc
Confidence 99999985 78999998632 11 1234679999999999998854
No 15
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.59 E-value=2.4e-14 Score=146.58 Aligned_cols=145 Identities=24% Similarity=0.284 Sum_probs=101.7
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc--------h-------hh------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF--------S-------AM------------ 140 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~--------~-------~~------------ 140 (356)
.++||||||+|.||++||+.+++. |.+|+||||....++++ +..|.+. + ..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~-G~~V~lveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~d~~~~g~~~~d~~l 89 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA-GLKTACITKVFPTRSHTVAAQGGISASLGNMGEDDWRWHMYDTVKGSDWLGDQDA 89 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCCCcchhhhcCCcccccCCCCCCCHHHHHHHHHHhccCCCCHHH
Confidence 468999999999999999999999 99999999986554432 2211110 0 00
Q ss_pred ----hcc-chHHHHHHHhCCCccccCC--eEE------------------Ee-----chHHHHHHHHHHHHcCCCcEEEc
Q 018414 141 ----VVR-KPAHIFLDELGIDYDEQDN--YVV------------------IK-----HAALFTSTIMSKLLARPNVKLFN 190 (356)
Q Consensus 141 ----~~~-~~~~~~l~~~G~~~~~~~~--~~~------------------~~-----~~~~~~~~l~~~~~~~~gv~i~~ 190 (356)
+.+ ...++||+++|++|+...+ +.. .. ....+...|++.+. +.|+++++
T Consensus 90 v~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~d~tG~~i~~~L~~~~~-~~gi~i~~ 168 (598)
T PRK09078 90 IEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAADRTGHAILHTLYQQSL-KHNAEFFI 168 (598)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCccceeEecCCCCHHHHHHHHHHHHh-hcCCEEEE
Confidence 001 1346899999999865321 100 00 12457778888776 57999999
Q ss_pred CeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 191 AVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 191 ~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
++.+++|+.++ ++|.|+...+ .. ++....+.|+.||+||||++..
T Consensus 169 ~~~v~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~~ 214 (598)
T PRK09078 169 EYFALDLIMDDGGVCRGVVAWN------LD---DGTLHRFRAHMVVLATGGYGRA 214 (598)
T ss_pred eEEEEEEEEcCCCEEEEEEEEE------CC---CCcEEEEEcCEEEECCCCCccc
Confidence 99999999875 7899997631 11 1234689999999999998854
No 16
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.58 E-value=4.9e-14 Score=141.88 Aligned_cols=142 Identities=24% Similarity=0.389 Sum_probs=100.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc--------------------chhhh-------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL--------------------FSAMV------- 141 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~--------------------~~~~~------- 141 (356)
++||||||+|.+|++||+.+++. |.+|+||||....||++ +..|.+ +..++
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~~-Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 139 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKDA-GMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN 139 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence 68999999999999999999999 99999999998777643 111111 00000
Q ss_pred --------c--cchHHHHHHHhCCCccccC---C--e----EEE---echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE
Q 018414 142 --------V--RKPAHIFLDELGIDYDEQD---N--Y----VVI---KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 199 (356)
Q Consensus 142 --------~--~~~~~~~l~~~G~~~~~~~---~--~----~~~---~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~ 199 (356)
. ....++||+++|++|.... . + ... .....+...|.+.+. +.|+++++++++++|..
T Consensus 140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~-~~gv~i~~~t~v~~l~~ 218 (506)
T PRK06481 140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQ-ERKIPLFVNADVTKITE 218 (506)
T ss_pred CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHH-HcCCeEEeCCeeEEEEe
Confidence 0 1134688999998875321 0 0 000 112456777777775 67999999999999998
Q ss_pred eCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++++|.++.+.. . +++..+++||.||+|+|+++.
T Consensus 219 ~~g~V~Gv~~~~-------~---~g~~~~i~a~~VVlAtGG~~~ 252 (506)
T PRK06481 219 KDGKVTGVKVKI-------N---GKETKTISSKAVVVTTGGFGA 252 (506)
T ss_pred cCCEEEEEEEEe-------C---CCeEEEEecCeEEEeCCCccc
Confidence 888999887642 1 112357999999999998874
No 17
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.57 E-value=5.7e-14 Score=143.47 Aligned_cols=146 Identities=23% Similarity=0.310 Sum_probs=102.6
Q ss_pred cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccc-cCCccc-------------hh---------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAW-LGGQLF-------------SA--------------- 139 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~-~~g~~~-------------~~--------------- 139 (356)
++||||||+|.||++||+.+++. +|.+|+||||....++++. .+|.+. ..
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~ 83 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVE 83 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChhhccchhhhhcCCCCCHHHHHHHHHHhcccCCCHHHHH
Confidence 58999999999999999999975 2589999999876554432 222110 00
Q ss_pred -hhcc-chHHHHHHHhCCCccccCC--eEE----------Ee-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414 140 -MVVR-KPAHIFLDELGIDYDEQDN--YVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (356)
Q Consensus 140 -~~~~-~~~~~~l~~~G~~~~~~~~--~~~----------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~ 200 (356)
++.+ ...++||+++|++|+...+ +.. .. ....+...|++++.+..++++++++.+++|+.+
T Consensus 84 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 163 (582)
T PRK09231 84 YFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVD 163 (582)
T ss_pred HHHHHHHHHHHHHHHcCCCcccCCCCceeeeccccccCCeeEecCCCcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEe
Confidence 0111 1356899999999975321 100 11 234577788887765568999999999999998
Q ss_pred CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+++|.|+...+ .. +++...++||.||+|||+++.+
T Consensus 164 ~g~v~Gv~~~~------~~---~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 164 DGHVRGLVAMN------MM---EGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred CCEEEEEEEEE------cC---CCcEEEEECCEEEECCCCCcCC
Confidence 89999987631 11 1234689999999999998854
No 18
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.57 E-value=2.9e-14 Score=145.76 Aligned_cols=146 Identities=22% Similarity=0.316 Sum_probs=102.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCC---CeEEEEeccCCCCCccc-cCCccc-----------h---------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPN---IQIAIIEQSVSPGGGAW-LGGQLF-----------S--------------- 138 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G---~~V~llEk~~~~Gg~~~-~~g~~~-----------~--------------- 138 (356)
.++||+|||+|.||++||+.+++. | .+|+||||....++++. .+|.+. .
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~-G~~~~~V~lleK~~~~~~~s~~a~Gg~~a~~~~~~~ds~e~~~~d~~~~g~~~~d 82 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAER-SGGKLSVAVVSKTQPMRSHSVSAEGGTAAVLYPEKGDSFDLHAYDTVKGSDFLAD 82 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHh-CCCCCcEEEEEcccCCCCCceecccccceeeccccCCCHHHHHHHHHHhhcccCC
Confidence 358999999999999999999998 7 89999999876655332 222110 0
Q ss_pred ----hhhc-c-chHHHHHHHhCCCccccCC--e----------EEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEE
Q 018414 139 ----AMVV-R-KPAHIFLDELGIDYDEQDN--Y----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAE 195 (356)
Q Consensus 139 ----~~~~-~-~~~~~~l~~~G~~~~~~~~--~----------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~ 195 (356)
..+. + ...++||+++|++|+...+ + +... ....+.+.|++++.+..|+++++++.++
T Consensus 83 ~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~ 162 (577)
T PRK06069 83 QDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQRPFGGMSFPRTTFAADKTGFYIMHTLYSRALRFDNIHFYDEHFVT 162 (577)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEeeeecCCcccceeeEcCCCchHHHHHHHHHHHHhcCCCEEEECCEEE
Confidence 0000 0 1346899999999975422 1 1111 1245777888887655799999999999
Q ss_pred EEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 196 DLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 196 ~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+++.++++|.|+...+ .. +++...+.||.||+|||+++..
T Consensus 163 ~Li~~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 163 SLIVENGVFKGVTAID------LK---RGEFKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred EEEEECCEEEEEEEEE------cC---CCeEEEEECCcEEEcCchhccc
Confidence 9998889999987631 11 1123578999999999998743
No 19
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=8.4e-14 Score=143.49 Aligned_cols=145 Identities=20% Similarity=0.200 Sum_probs=98.7
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC-c-cccCCccc---------------------------h-
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG-G-AWLGGQLF---------------------------S- 138 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg-~-~~~~g~~~---------------------------~- 138 (356)
.++||+|||+|.|||+||+.|++. |.+|+||||...+++ + .+.+|.+. +
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~-G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~~~~~~d~~~~g~~~~d~ 112 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGEL-GYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLFYDTVKGGDFRARE 112 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCHHHHHHHHHHhcCCCCCH
Confidence 468999999999999999999999 999999999766542 2 22222110 0
Q ss_pred ----hhhcc-chHHHHHHHhCCCccccCC--eEE----------Ee-----chHHHH----HHHHHHHHcCCCcEEEcCe
Q 018414 139 ----AMVVR-KPAHIFLDELGIDYDEQDN--YVV----------IK-----HAALFT----STIMSKLLARPNVKLFNAV 192 (356)
Q Consensus 139 ----~~~~~-~~~~~~l~~~G~~~~~~~~--~~~----------~~-----~~~~~~----~~l~~~~~~~~gv~i~~~~ 192 (356)
.++.+ ...++||+++|++|..... +.. .. ....+. +.|.+.+. +.||++++++
T Consensus 113 ~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~~~L~~~~~-~~gV~i~~~t 191 (640)
T PRK07573 113 ANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAYQALSRQIA-AGTVKMYTRT 191 (640)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHHHHHHHHHH-hcCCEEEece
Confidence 00111 1456899999999964321 100 00 112233 34444554 6799999999
Q ss_pred EEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 193 AAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 193 ~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
.+++|+.++++|.||.+.+ .. ++....+.||.||+||||++..
T Consensus 192 ~v~~Li~d~g~V~GV~~~~------~~---~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 192 EMLDLVVVDGRARGIVARN------LV---TGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred EEEEEEEeCCEEEEEEEEE------CC---CCcEEEEECCEEEECCCCcccC
Confidence 9999999889999998742 11 1234579999999999998854
No 20
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.56 E-value=6.2e-14 Score=143.18 Aligned_cols=145 Identities=23% Similarity=0.326 Sum_probs=100.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-ccCCccc------------h-----------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-WLGGQLF------------S----------------- 138 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~-~~~g~~~------------~----------------- 138 (356)
++||||||+|.||++||+.|++. +|.+|+||||....++++ +.+|.+. .
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~s~~a~GGi~a~~~~~~~~ds~e~~~~d~~~~~~~l~d~~ 82 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPEDSWEAHAFDTVKGSDYLADQD 82 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchhhHHhccchhhhccCCCCCCCHHHHHHHHHHHhCCCCCHH
Confidence 58999999999999999999975 158999999987655433 2222110 0
Q ss_pred --hhhc-c-chHHHHHHHhCCCccccCCe--E----------EE-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEE
Q 018414 139 --AMVV-R-KPAHIFLDELGIDYDEQDNY--V----------VI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDL 197 (356)
Q Consensus 139 --~~~~-~-~~~~~~l~~~G~~~~~~~~~--~----------~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i 197 (356)
..+. + ...++||+++|++|+...+. . .. .....+...|++.+. +.|+++++++.+++|
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~t~v~~L 161 (575)
T PRK05945 83 AVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLR-RYGVTIYDEWYVMRL 161 (575)
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEECCCCcEeeccccccccCeeEecCCCChHHHHHHHHHHHh-hCCCEEEeCcEEEEE
Confidence 0000 0 13468899999999764211 1 01 123567788888776 579999999999999
Q ss_pred EEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 198 IVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 198 ~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+.++++|.|+...+ .. +++...+.|+.||+|||+++..
T Consensus 162 ~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 162 ILEDNQAKGVVMYH------IA---DGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred EEECCEEEEEEEEE------cC---CCeEEEEECCEEEECCCCCcCC
Confidence 98889999987521 11 1233579999999999998743
No 21
>PLN02815 L-aspartate oxidase
Probab=99.56 E-value=4.8e-14 Score=143.82 Aligned_cols=146 Identities=20% Similarity=0.262 Sum_probs=102.3
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-------------hh---------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-------------SA--------------- 139 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-------------~~--------------- 139 (356)
.++||||||+|.|||+||+.+++. | +|+||||....++++ |.+|.+. ..
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~gg~s~~a~Ggi~a~~~~~Ds~e~~~~d~~~~g~~~~d~~lv~ 105 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEY-G-TVAIITKDEPHESNTNYAQGGVSAVLDPSDSVESHMRDTIVAGAFLCDEETVR 105 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhC-C-CEEEEECCCCCCCcHHHhhcccccCCCCCCCHHHHHHHHHHhccCCCcHHHHH
Confidence 358999999999999999999999 8 999999998766533 2322210 00
Q ss_pred -hhcc-chHHHHHHHhCCCccccCC--eE----------EEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414 140 -MVVR-KPAHIFLDELGIDYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (356)
Q Consensus 140 -~~~~-~~~~~~l~~~G~~~~~~~~--~~----------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~ 200 (356)
++.+ ...++||+++|++|+...+ +. ... ....+...|++.+.+..|+++++++.+++|+.+
T Consensus 106 ~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~R~~~~~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~ 185 (594)
T PLN02815 106 VVCTEGPERVKELIAMGASFDHGEDGNLHLAREGGHSHHRIVHAADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTS 185 (594)
T ss_pred HHHHHHHHHHHHHHHhCCeeeecCCCCccccCCCCCccCceeecCCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeee
Confidence 0011 1346899999999975321 11 111 234677888888875679999999999999986
Q ss_pred -CC---eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 201 -GG---RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 201 -~~---~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
++ +|.|+.+.+ .. ++....+.||.||+||||++.+.
T Consensus 186 ~~g~~~~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~g~~~ 225 (594)
T PLN02815 186 QDGGSIVCHGADVLD------TR---TGEVVRFISKVTLLASGGAGHIY 225 (594)
T ss_pred cCCCccEEEEEEEEE------cC---CCeEEEEEeceEEEcCCcceeeC
Confidence 34 388887632 11 12346789999999999988543
No 22
>PRK07121 hypothetical protein; Validated
Probab=99.56 E-value=9.6e-14 Score=139.43 Aligned_cols=142 Identities=25% Similarity=0.389 Sum_probs=100.0
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCcc----------------------chhh------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL----------------------FSAM------ 140 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~----------------------~~~~------ 140 (356)
.++||||||+|.+|++||++|+++ |.+|+||||....||++...+.. ...+
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~-G~~VillEK~~~~gG~s~~sgG~~~~~~g~~~q~~~g~~d~~~~~~~~~~~~~~~ 97 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAA-GARVLVLERAAGAGGATALSGGVIYLGGGTAVQKAAGFEDSPENMYAYLRVAVGP 97 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcccccCeEEEeCCCcHHHHhcCCCCCHHHHHHHHHHHhCC
Confidence 369999999999999999999999 99999999998777654321110 0000
Q ss_pred ----------hc-cchHHHHHHHhCCCccccC--------------CeE-------------------EEe------chH
Q 018414 141 ----------VV-RKPAHIFLDELGIDYDEQD--------------NYV-------------------VIK------HAA 170 (356)
Q Consensus 141 ----------~~-~~~~~~~l~~~G~~~~~~~--------------~~~-------------------~~~------~~~ 170 (356)
+. ....++||+++|++|.... .+. ... ...
T Consensus 98 ~~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 177 (492)
T PRK07121 98 GVDEEKLRRYCEGSVEHFDWLEGLGVPFERSFFPEKTSYPPNDEGLYYSGNEKAWPFAEIAKPAPRGHRVQGPGDSGGGA 177 (492)
T ss_pred CCCHHHHHHHHHccHHHHHHHHHcCcEEEeccCCCcccCCCCCcccccchhhcchhhhhccCCcccceecCCCCCCCchH
Confidence 00 0134689999998875321 000 000 234
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEc-CEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A-k~VI~AtGg~~~ 243 (356)
.+...|.+.+. +.|+++++++++++|+.+ +++|.||.... .++...++| |.||+|||+++.
T Consensus 178 ~~~~~L~~~~~-~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----------~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 178 MLMDPLAKRAA-ALGVQIRYDTRATRLIVDDDGRVVGVEARR-----------YGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----------CCcEEEEEeCCEEEECCCCcCc
Confidence 56777777775 679999999999999987 46899987742 112467899 999999998873
No 23
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.55 E-value=7.3e-14 Score=137.25 Aligned_cols=141 Identities=26% Similarity=0.361 Sum_probs=93.7
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-CCcc----------------chh---------------
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GGQL----------------FSA--------------- 139 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~-~g~~----------------~~~--------------- 139 (356)
||||||+|.+|++||+.|+++ |.+|+||||....|+++.. .+.+ ...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~-G~~V~lvek~~~~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA-GAKVLLVEKGPRLGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDIMAAGGGLNDP 79 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT-TT-EEEEESSSGGGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHHHHHTTT-S-H
T ss_pred CEEEECCCHHHHHHHHHHhhh-cCeEEEEEeecccccccccccCceeeecccccccccccccccccceeeeccccccccc
Confidence 899999999999999999999 9999999999876664321 1110 000
Q ss_pred ----hhcc--chHHHHHHHhCCCcccc--------------CCeEEEe-----------chHHHHHHHHHHHHcCCCcEE
Q 018414 140 ----MVVR--KPAHIFLDELGIDYDEQ--------------DNYVVIK-----------HAALFTSTIMSKLLARPNVKL 188 (356)
Q Consensus 140 ----~~~~--~~~~~~l~~~G~~~~~~--------------~~~~~~~-----------~~~~~~~~l~~~~~~~~gv~i 188 (356)
.+.+ ...++||.++|++|... ..+.... ....+...|.+.++ +.|++|
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~gv~i 158 (417)
T PF00890_consen 80 DLVRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKALIEALAKAAE-EAGVDI 158 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHHHHHHHHHHHH-HTTEEE
T ss_pred chhhhhhhcccceehhhhhhcccccccccccccccccCCccccceeeeccccccccccccHHHHHHHHHHHHh-hcCeee
Confidence 0000 13468999999988771 0101111 23556677777776 678999
Q ss_pred EcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 189 FNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 189 ~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++++++++|+.++++|.|+...+. . +++..+++|+.||+|||+++.
T Consensus 159 ~~~~~~~~Li~e~g~V~Gv~~~~~------~---~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 159 RFNTRVTDLITEDGRVTGVVAENP------A---DGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp EESEEEEEEEEETTEEEEEEEEET------T---TCEEEEEEESEEEE----BGG
T ss_pred eccceeeeEEEeCCceeEEEEEEC------C---CCeEEEEeeeEEEeccCcccc
Confidence 999999999999999999998621 1 224568999999999998875
No 24
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.55 E-value=1e-13 Score=141.41 Aligned_cols=146 Identities=23% Similarity=0.321 Sum_probs=104.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-ccCCccc-------------h----------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-WLGGQLF-------------S---------------- 138 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~-~~~g~~~-------------~---------------- 138 (356)
++||+|||+|+||++||+.+++. +|.+|+||||....++++ +.+|.+. .
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv~ 82 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVVE 82 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHHH
Confidence 58999999999999999999975 258999999997666543 2222110 0
Q ss_pred hhhcc-chHHHHHHHhCCCccccCC--eEE----------E-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414 139 AMVVR-KPAHIFLDELGIDYDEQDN--YVV----------I-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (356)
Q Consensus 139 ~~~~~-~~~~~~l~~~G~~~~~~~~--~~~----------~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~ 200 (356)
.++.+ ...++||+++|++|+...+ +.. . .....+.+.|++++.+..+++++.++.+++|+.+
T Consensus 83 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~ 162 (580)
T TIGR01176 83 YFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD 162 (580)
T ss_pred HHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEee
Confidence 00111 1356899999999975421 111 0 0235677888888775578999999999999998
Q ss_pred CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+++|.|+...+ .. +++...+.|+.||+|||+++..
T Consensus 163 ~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 163 DGRVCGLVAIE------MA---EGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred CCEEEEEEEEE------cC---CCcEEEEecCEEEEcCCCCccc
Confidence 99999987632 11 1234689999999999998854
No 25
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=1.3e-13 Score=141.88 Aligned_cols=145 Identities=25% Similarity=0.417 Sum_probs=100.1
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc----------------c-----------h--
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL----------------F-----------S-- 138 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~----------------~-----------~-- 138 (356)
.++||||||+|.||++||+.+++. |.+|+||||....++++ +.+|.+ + +
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~ds~~~~~~D~~~~g~~l~d~~ 85 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLFGKAHTVMAEGGCAAAMGNVNPKDNWQVHFRDTMRGGKFLNNWR 85 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCCCCCcceecCccceeeccCCCCCCCHHHHHHHHHHHhccCCcHH
Confidence 368999999999999999999999 99999999987554322 211110 0 0
Q ss_pred --hhhcc--chHHHHHHHhCCCccccCC------------eEEEe-----chHHHHHHHHHHHHcCC-------C-----
Q 018414 139 --AMVVR--KPAHIFLDELGIDYDEQDN------------YVVIK-----HAALFTSTIMSKLLARP-------N----- 185 (356)
Q Consensus 139 --~~~~~--~~~~~~l~~~G~~~~~~~~------------~~~~~-----~~~~~~~~l~~~~~~~~-------g----- 185 (356)
..+.. ...++||+++|++|+...+ ++... ....+...|.+.+.+.. |
T Consensus 86 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~ 165 (626)
T PRK07803 86 MAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGHTYPRLAHVGDRTGLELIRTLQQKIVSLQQEDHAELGDYEAR 165 (626)
T ss_pred HHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCcccCeEEecCCCcHHHHHHHHHHHHHhhhccccccccCCcCc
Confidence 00111 1345789999999975321 11111 13467777777765331 5
Q ss_pred cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 186 v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+++++++.+++++.++++|.|+...+ .. +++...+.||.||+|||+++.
T Consensus 166 v~i~~~~~v~~L~~~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKDGGRIAGAFGYW------RE---SGRFVLFEAPAVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEECCEEEEEEEEE------CC---CCeEEEEEcCeEEECCCcccC
Confidence 99999999999998888999887531 11 123457999999999999764
No 26
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.54 E-value=1.1e-13 Score=142.93 Aligned_cols=146 Identities=20% Similarity=0.232 Sum_probs=100.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc------------------ch-----------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL------------------FS----------- 138 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~------------------~~----------- 138 (356)
.++||||||+|.||+.||+.+++. |++|+||||....++.+ +..|.+ +.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~-G~~VivleK~~~~~s~s~~a~GGi~a~~g~~~~g~~Ds~e~~~~Dt~k~~~~~~D 82 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQR-GLDTIVLSLVPAKRSHSAAAQGGMQASLGNAVKGEGDNEDVHFADTVKGSDWGCD 82 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHc-CCCEEEEeCCCCCCcchHHHhhhHHhhccccccCCCCCHHHHHHHHHHhcCCCCC
Confidence 368999999999999999999999 99999999987654332 111100 00
Q ss_pred ----hhhcc--chHHHHHHHhCCCccccCC----------------------------e------EEE----echHHHHH
Q 018414 139 ----AMVVR--KPAHIFLDELGIDYDEQDN----------------------------Y------VVI----KHAALFTS 174 (356)
Q Consensus 139 ----~~~~~--~~~~~~l~~~G~~~~~~~~----------------------------~------~~~----~~~~~~~~ 174 (356)
..+.. ...++||.++|++|..... | ... .....+..
T Consensus 83 ~~~vr~~v~~sp~~i~~L~~~Gv~f~r~~~g~~~~~~~g~~~~~~~~~~~~~~i~~r~~GG~~~~R~~~~~d~tG~~l~~ 162 (657)
T PRK08626 83 QEVARMFVHTAPKAVRELAAWGVPWTRVTAGPRTVVINGEKVTITEKEEAHGLINARDFGGTKKWRTCYTADGTGHTMLY 162 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCeecCCCcccccccccccccccccccccccccccccccccceeEecCCCcHHHHHH
Confidence 00011 1346899999998865311 0 000 01234555
Q ss_pred HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 175 TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 175 ~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
.|.+.+. +.|+++++++.+++|+.++++|.|+.+.+ .. +++...+.||.||+||||++...
T Consensus 163 ~L~~~~~-~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~------~~---~G~~~~i~AkaVVLATGG~g~~y 223 (657)
T PRK08626 163 AVDNEAI-KLGVPVHDRKEAIALIHDGKRCYGAVVRC------LI---TGELRAYVAKATLIATGGYGRIY 223 (657)
T ss_pred HHHHHHH-hCCCEEEeeEEEEEEEEECCEEEEEEEEE------cC---CCcEEEEEcCeEEECCCcccCCC
Confidence 6666665 67999999999999999889999988742 11 12346789999999999988654
No 27
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.54 E-value=1.2e-13 Score=138.56 Aligned_cols=142 Identities=28% Similarity=0.458 Sum_probs=102.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-------------hhh---------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-------------SAM--------------- 140 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-------------~~~--------------- 140 (356)
++||+|||+|.||++||+.+++. |. |+||||....++++ |.+|.+. ...
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~-G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~ 79 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ-GR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEF 79 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC-CC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHH
Confidence 48999999999999999999998 87 99999997655544 3222210 000
Q ss_pred hc-c-chHHHHHHHhCCCccccC--Ce----------EEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC
Q 018414 141 VV-R-KPAHIFLDELGIDYDEQD--NY----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 201 (356)
Q Consensus 141 ~~-~-~~~~~~l~~~G~~~~~~~--~~----------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~ 201 (356)
+. + ...++||+++|++|+... .+ +... ....+.+.|.+.+.+..|+++++++.+++|+.++
T Consensus 80 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~ 159 (488)
T TIGR00551 80 VVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIET 159 (488)
T ss_pred HHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC
Confidence 00 0 135689999999987532 11 1111 2356778888887644799999999999999888
Q ss_pred CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 202 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 202 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+++.|+.+.+ . +....++|+.||+|||+++..
T Consensus 160 g~v~Gv~~~~------~-----~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 160 GRVVGVWVWN------R-----ETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred CEEEEEEEEE------C-----CcEEEEEcCEEEECCCcccCC
Confidence 8898887642 0 123578999999999998854
No 28
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.54 E-value=1.9e-13 Score=136.35 Aligned_cols=142 Identities=16% Similarity=0.247 Sum_probs=99.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC--CCCccc-cCCc-------------------cchhhh------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--PGGGAW-LGGQ-------------------LFSAMV------ 141 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~--~Gg~~~-~~g~-------------------~~~~~~------ 141 (356)
++||||||+|++|++||+.|+++ |.+|+||||... .||++. .+|. ++..+.
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~-G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREA-GASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence 58999999999999999999999 999999999863 454332 1110 000000
Q ss_pred ----------c-cchHHHHHHHhCCCccccCC--e-------EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC
Q 018414 142 ----------V-RKPAHIFLDELGIDYDEQDN--Y-------VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG 201 (356)
Q Consensus 142 ----------~-~~~~~~~l~~~G~~~~~~~~--~-------~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~ 201 (356)
. ....++|+.++|++|..... + ........+...|.+.+. +.|++++++++|++|+.++
T Consensus 83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~-~~gv~i~~~t~v~~l~~~~ 161 (466)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAE-RLGVEIRYDAPVTALELDD 161 (466)
T ss_pred CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecC
Confidence 0 01345788889988754311 1 111123567777777775 6799999999999999888
Q ss_pred CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 202 GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 202 ~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++|.++.+.. . +++...++||.||+|||+++.
T Consensus 162 g~v~gv~~~~------~----~g~~~~i~a~~VIlAtGg~~~ 193 (466)
T PRK08274 162 GRFVGARAGS------A----AGGAERIRAKAVVLAAGGFES 193 (466)
T ss_pred CeEEEEEEEc------c----CCceEEEECCEEEECCCCCCC
Confidence 8999887631 0 123467899999999998763
No 29
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.54 E-value=1.6e-13 Score=140.49 Aligned_cols=145 Identities=21% Similarity=0.351 Sum_probs=100.5
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCcc-----------ch------------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQL-----------FS------------------ 138 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~-----------~~------------------ 138 (356)
.++||||||+|.|||+||+.+++. |.+|+||||....++++. ..|.+ +.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~vleK~~~~~g~t~~a~Ggi~~~~~~~~~ds~~~~~~dt~~~g~~~~d~~~ 89 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARA-GLSVAVLSKVFPTRSHTVAAQGGIGASLGNMSEDNWHYHFYDTIKGSDWLGDQDA 89 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCCchhccCCcccccccccccChhHhHHHHHHhcCCCCCHHH
Confidence 468999999999999999999999 999999999865443321 11111 00
Q ss_pred -hhhcc--chHHHHHHHhCCCccccCC--eEE-----------------Ee-----chHHHHHHHHHHHHcCCCcEEEcC
Q 018414 139 -AMVVR--KPAHIFLDELGIDYDEQDN--YVV-----------------IK-----HAALFTSTIMSKLLARPNVKLFNA 191 (356)
Q Consensus 139 -~~~~~--~~~~~~l~~~G~~~~~~~~--~~~-----------------~~-----~~~~~~~~l~~~~~~~~gv~i~~~ 191 (356)
..+.+ ...++||.++|++|+...+ +.. .. ....+...|++.+. +.|++++++
T Consensus 90 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~l~~~L~~~~~-~~gi~i~~~ 168 (591)
T PRK07057 90 IEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQRACAAADRTGHALLHTLYQQNV-AAKTQFFVE 168 (591)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccceeeecCCCChHHHHHHHHHHHH-hcCCEEEeC
Confidence 00000 1346888999999975321 110 00 12457777887775 679999999
Q ss_pred eEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 192 VAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 192 ~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+.+++|+.+ +++|.|+.+.+ .. ++....+.||.||+||||++..
T Consensus 169 ~~~~~Li~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~~~~ 213 (591)
T PRK07057 169 WMALDLIRDADGDVLGVTALE------ME---TGDVYILEAKTTLFATGGAGRI 213 (591)
T ss_pred cEEEEEEEcCCCeEEEEEEEE------cC---CCeEEEEECCeEEECCCCcccc
Confidence 999999986 57899987632 11 1234578999999999998754
No 30
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.54 E-value=7.6e-14 Score=141.58 Aligned_cols=143 Identities=24% Similarity=0.416 Sum_probs=101.1
Q ss_pred CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-------------hhh-------------
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-------------SAM------------- 140 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-------------~~~------------- 140 (356)
..++||||||+|.||++||+.++ . |.+|+||||....|+++ +.+|.+. ...
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~-G~~V~lieK~~~~gg~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~~~~d~~lv 84 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-S-HLRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAV 84 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-c-CCCEEEEEccCCCCCchhhhcccceecccCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 34699999999999999999985 5 89999999998766544 3322211 000
Q ss_pred --hc-c-chHHHHHHHhCCCccccCC-e----------EEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414 141 --VV-R-KPAHIFLDELGIDYDEQDN-Y----------VVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (356)
Q Consensus 141 --~~-~-~~~~~~l~~~G~~~~~~~~-~----------~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~ 200 (356)
+. + ...++||.++|++|+.... + +... ....+...|.+.+.++.|+++++++.+++|+.+
T Consensus 85 ~~~~~~s~~~i~wL~~~Gv~f~~~~~~~~~~~~~g~s~~r~~~~~d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~ 164 (553)
T PRK07395 85 RFLVEQAPEAIASLVEMGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLE 164 (553)
T ss_pred HHHHHHHHHHHHHHHhcCCeeecCCCceeeecccccccCeEEEeCCCChHHHHHHHHHHHhhcCCcEEEECcChhhheec
Confidence 00 1 1346899999999975321 1 0111 235677888887765669999999999999986
Q ss_pred C--CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 201 G--GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 201 ~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+ ++|.|+.+.. ++....+.||.||+||||++.
T Consensus 165 ~~~g~v~Gv~~~~-----------~g~~~~i~AkaVILATGG~~~ 198 (553)
T PRK07395 165 PETGRCQGISLLY-----------QGQITWLRAGAVILATGGGGQ 198 (553)
T ss_pred CCCCEEEEEEEEE-----------CCeEEEEEcCEEEEcCCCCcc
Confidence 3 7899987641 122456899999999999764
No 31
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.53 E-value=2.1e-13 Score=138.26 Aligned_cols=147 Identities=24% Similarity=0.318 Sum_probs=101.1
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccc-------------hhh--------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF-------------SAM-------------- 140 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~-------------~~~-------------- 140 (356)
.++||||||+|.||++||+.+++. |.+|+||||....+|++. .+|.+. ...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~ 93 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVR 93 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 368999999999999999999999 999999999986654332 222110 000
Q ss_pred --hcc-chHHHHHHHhCCCccccC--CeEE----------Ee------chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE
Q 018414 141 --VVR-KPAHIFLDELGIDYDEQD--NYVV----------IK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 199 (356)
Q Consensus 141 --~~~-~~~~~~l~~~G~~~~~~~--~~~~----------~~------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~ 199 (356)
+.+ ...++||.++|++|+... .+.. .. ....+.+.|.+++. +.++++++++.+++++.
T Consensus 94 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~-~~gV~i~~~~~v~~Li~ 172 (541)
T PRK07804 94 SLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVR-ADPLDIREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHH-hCCCEEEECeEeeeeEE
Confidence 001 134689999999997532 1111 11 23467778877775 56899999999999998
Q ss_pred eC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 200 KG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 200 ~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++ ++|.|+.+.+ ..++..+....+.||.||+|||+++.
T Consensus 173 ~~~g~v~Gv~~~~------~~~~~~~g~~~i~Ak~VIlATGG~~~ 211 (541)
T PRK07804 173 DGTGAVAGVTLHV------LGEGSPDGVGAVHAPAVVLATGGLGQ 211 (541)
T ss_pred cCCCeEEEEEEEe------ccCCCCCcEEEEEcCeEEECCCCCCC
Confidence 75 6899987631 00000011357899999999999874
No 32
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.53 E-value=1.4e-13 Score=141.22 Aligned_cols=146 Identities=23% Similarity=0.359 Sum_probs=100.6
Q ss_pred CcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCc--c---------chhh----------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQ--L---------FSAM---------------- 140 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~--~---------~~~~---------------- 140 (356)
.++||||||+|.||++||+.+++. +|.+|+||||....+++++.+|. + +..+
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~l 89 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDL 89 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHH
Confidence 368999999999999999999885 48999999998754444333221 0 0000
Q ss_pred ---hc-c-chHHHHHHHhCCCccccCC--eEE------EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEE
Q 018414 141 ---VV-R-KPAHIFLDELGIDYDEQDN--YVV------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGV 207 (356)
Q Consensus 141 ---~~-~-~~~~~~l~~~G~~~~~~~~--~~~------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv 207 (356)
+. + ...++||+++|++|..... +.. ......+...|.+.+.+..|+++++++.|++++.++++|.||
T Consensus 90 v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv 169 (608)
T PRK06854 90 VYDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGA 169 (608)
T ss_pred HHHHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 00 0 1356889999999865421 111 113446667777777644459999999999999888899988
Q ss_pred EEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 208 VTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 208 ~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
...+ .. +++...++||.||+|||+++.
T Consensus 170 ~~~~------~~---~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 170 VGFS------VR---ENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred EEEE------cc---CCcEEEEECCEEEECCCchhh
Confidence 6521 01 112357999999999999874
No 33
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.53 E-value=1.7e-13 Score=139.38 Aligned_cols=150 Identities=25% Similarity=0.321 Sum_probs=100.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--CCCCccc-cCCcc------------------------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--SPGGGAW-LGGQL------------------------------ 136 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--~~Gg~~~-~~g~~------------------------------ 136 (356)
++||||||+|.+||+||+.+++. |++|+||||.. ..||.+. .+|.+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~~~~~GG~s~~s~Gg~~~~~~~~q~~~gi~ds~e~~~~d~~~~~~~ 82 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADA-GKRVLLLDQENEANLGGQAFWSLGGLFLVDSPEQRRLGIKDSLELALQDWLGSAGF 82 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCCCCCCceeccCCceeccCCHHHHhcCcccCHHHHHHHHHhccCC
Confidence 58999999999999999999999 99999999998 5565432 11110
Q ss_pred -----------chhhhc--cchHHHHHHHhCCCccccC---------------CeEEE----echHHHHHHHHHHHH---
Q 018414 137 -----------FSAMVV--RKPAHIFLDELGIDYDEQD---------------NYVVI----KHAALFTSTIMSKLL--- 181 (356)
Q Consensus 137 -----------~~~~~~--~~~~~~~l~~~G~~~~~~~---------------~~~~~----~~~~~~~~~l~~~~~--- 181 (356)
...++. ....++||+++|++|.... .++.. .....+...|.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~G~~~~~~l~~~~~~~~ 162 (549)
T PRK12834 83 DRPEDHWPRQWAEAYVDFAAGEKRSWLHSLGLRFFPVVGWAERGGGDAGGHGNSVPRFHITWGTGPGVVEPFERRVREAA 162 (549)
T ss_pred CCccccchHHHHHHHHHhCCHHHHHHHHHcCCeeEecCCccccCCcccCCcccccCceecCCCCcHHHHHHHHHHHHHHH
Confidence 001111 1356789999999885321 01000 012345666665543
Q ss_pred cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCC-------C-CCCCCeEEEcCEEEEcCCCCCCC
Q 018414 182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT-------Q-SCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~-------~-~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+..++++++++++++|+.++++|.||.+.. ...+. . ..+....+.||.||+||||++..
T Consensus 163 ~~~gv~i~~~t~~~~Li~~~g~V~Gv~~~~----~~~~~~~~~~~~~~~~~~~~~i~AkaVILATGGf~~n 229 (549)
T PRK12834 163 ARGLVRFRFRHRVDELVVTDGAVTGVRGTV----LEPSDAERGEASSREVVGEFELRAQAVIVTSGGIGGN 229 (549)
T ss_pred HhCCceEEecCEeeEEEEeCCEEEEEEEEe----cccccccccccccccccceEEEecCEEEEeCCCcccC
Confidence 244699999999999999889999998631 00000 0 00123578999999999998853
No 34
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.51 E-value=2.9e-13 Score=137.15 Aligned_cols=146 Identities=23% Similarity=0.372 Sum_probs=102.5
Q ss_pred CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc-cccCCccc-------------hhhh------------
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG-AWLGGQLF-------------SAMV------------ 141 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~-~~~~g~~~-------------~~~~------------ 141 (356)
..++||||||+|.||++||+.|++. .+|+||||....+++ .|.+|.+. ...+
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v 83 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPLSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDAV 83 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCCCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHHH
Confidence 3468999999999999999999874 799999999766654 34333211 0000
Q ss_pred ---c-c-chHHHHHHHhCCCccccC------CeEE----------Ee-----chHHHHHHHHHHHHcCCCcEEEcCeEEE
Q 018414 142 ---V-R-KPAHIFLDELGIDYDEQD------NYVV----------IK-----HAALFTSTIMSKLLARPNVKLFNAVAAE 195 (356)
Q Consensus 142 ---~-~-~~~~~~l~~~G~~~~~~~------~~~~----------~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~ 195 (356)
. + ...++||+++|++|+... .|.. .. ....+...|++++.+..|+++++++.++
T Consensus 84 ~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~ 163 (536)
T PRK09077 84 RFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILHAADATGKAVQTTLVERARNHPNITVLERHNAI 163 (536)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEecCCCCHHHHHHHHHHHHHhCCCcEEEeeEEee
Confidence 0 1 134689999999997532 1211 11 1245667788877766799999999999
Q ss_pred EEEEeC------CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 196 DLIVKG------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 196 ~i~~~~------~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+++.++ ++|.|+...+ .. +++...+.||.||+|||+++..
T Consensus 164 ~Li~~~~~~~~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 164 DLITSDKLGLPGRRVVGAYVLN------RN---KERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred eeeecccccCCCCEEEEEEEEE------CC---CCcEEEEecCeEEECCCCCCCC
Confidence 998764 7899988642 11 1234679999999999998854
No 35
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.51 E-value=2.3e-13 Score=138.97 Aligned_cols=142 Identities=29% Similarity=0.361 Sum_probs=99.2
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc----------------hhh--------------
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF----------------SAM-------------- 140 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~----------------~~~-------------- 140 (356)
||||||+|.+|++||+.|++. |.+|+||||....++++ +..|.+. ...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~-G~~V~lleK~~~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~~d~~~~~~~~~d~~~v~ 79 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA-GLNTAVISKVYPTRSHTVAAQGGMAAALGNVDPDDSWEWHAYDTVKGSDYLADQDAVE 79 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC-CCcEEEEeccCCCCCcchhhccCeEeecCCCCCCccHHHHHHHHHHHhCCCCCHHHHH
Confidence 899999999999999999999 99999999987654432 2111110 000
Q ss_pred -hc-c-chHHHHHHHhCCCccccCC--eEE----------E-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414 141 -VV-R-KPAHIFLDELGIDYDEQDN--YVV----------I-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (356)
Q Consensus 141 -~~-~-~~~~~~l~~~G~~~~~~~~--~~~----------~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~ 200 (356)
+. + ...++||+++|++|+.... +.. . .....+...|++.+. +.|+++++++.+++|+.+
T Consensus 80 ~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~L~~~ 158 (566)
T TIGR01812 80 YMCQEAPKAILELEHWGVPFSRTPDGRIAQRPFGGHSKDRTCYAADKTGHALLHTLYEQCL-KLGVSFFNEYFALDLIHD 158 (566)
T ss_pred HHHHHHHHHHHHHHHcCCcceecCCCcEeeccccccccCeeEECCCCCHHHHHHHHHHHHH-HcCCEEEeccEEEEEEEe
Confidence 00 0 1346899999999865321 110 0 013456677777776 559999999999999998
Q ss_pred CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+++|.|+...+ .. +++...++||.||+|||+++..
T Consensus 159 ~g~v~Gv~~~~------~~---~g~~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 159 DGRVRGVVAYD------LK---TGEIVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred CCEEEEEEEEE------CC---CCcEEEEECCeEEECCCcccCC
Confidence 89999987632 11 1234579999999999998743
No 36
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.51 E-value=3.5e-13 Score=136.85 Aligned_cols=143 Identities=22% Similarity=0.275 Sum_probs=98.9
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC-CCCc-cccCCccc-------------hhh-------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGG-AWLGGQLF-------------SAM------------- 140 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~-~Gg~-~~~~g~~~-------------~~~------------- 140 (356)
.++||||||+|.||++||+.+ +. |.+|+||||... .||+ .+.+|.+. ..+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~-G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv 83 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ER-GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLV 83 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hc-CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHH
Confidence 358999999999999999999 88 999999999864 3332 23222110 000
Q ss_pred --hc-c-chHHHHHHHhCCCccccCC--eE----------EEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE
Q 018414 141 --VV-R-KPAHIFLDELGIDYDEQDN--YV----------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 199 (356)
Q Consensus 141 --~~-~-~~~~~~l~~~G~~~~~~~~--~~----------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~ 199 (356)
+. + ...++||+++|++|....+ +. ... ....+...|.+.+. +.|+++++++.+++|+.
T Consensus 84 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~t~v~~Li~ 162 (543)
T PRK06263 84 EILVKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLI-KERIKILEEVMAIKLIV 162 (543)
T ss_pred HHHHHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHh-cCCCEEEeCeEeeeeEE
Confidence 00 0 1346899999999875321 11 110 23567777877776 57999999999999998
Q ss_pred eCCe-EEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 200 KGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 200 ~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++++ |.|+...+ .. +++...++||.||+|||+++.
T Consensus 163 ~~~~~v~Gv~~~~------~~---~g~~~~i~AkaVIlATGG~~~ 198 (543)
T PRK06263 163 DENREVIGAIFLD------LR---NGEIFPIYAKATILATGGAGQ 198 (543)
T ss_pred eCCcEEEEEEEEE------CC---CCcEEEEEcCcEEECCCCCCC
Confidence 7764 88887631 01 123467999999999999874
No 37
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.51 E-value=4.2e-13 Score=137.29 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=99.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCccc----------------hh-------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQLF----------------SA------------- 139 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~~----------------~~------------- 139 (356)
.+||||||+|.||++||+.+++. |++|+||||....++++. .+|.+. ..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~ 81 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPVKRSHSVCAQGGINGAVNTKGEGDSPWIHFDDTVYGGDFLANQPP 81 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCCCCCcccccCCCeEEecCcCCCCCCHHHHHHHHHHhcCCcCCHHH
Confidence 47999999999999999999999 999999999876554332 212110 00
Q ss_pred --hhc-c-chHHHHHHHhCCCccccCC--eEE----------Ee-----chHHHHHHHHHHHHcC---CCcEEEcCeEEE
Q 018414 140 --MVV-R-KPAHIFLDELGIDYDEQDN--YVV----------IK-----HAALFTSTIMSKLLAR---PNVKLFNAVAAE 195 (356)
Q Consensus 140 --~~~-~-~~~~~~l~~~G~~~~~~~~--~~~----------~~-----~~~~~~~~l~~~~~~~---~gv~i~~~~~v~ 195 (356)
.+. + ...++||+++|++|+...+ +.. .. ....+...|.+.+.+. .+++++.++.++
T Consensus 82 v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~ 161 (589)
T PRK08641 82 VKAMCEAAPGIIHLLDRMGVMFNRTPEGLLDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFL 161 (589)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCCCCcEeeeccCCeecccccccCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEE
Confidence 001 1 1346899999999965321 110 10 1345666776665432 238999999999
Q ss_pred EEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 196 DLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 196 ~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
+++.+ +++|.||.+.+ ..+ ++...+.||.||+||||++...
T Consensus 162 ~Li~~~~g~v~Gv~~~~------~~~---g~~~~i~AkaVILATGG~~~~y 203 (589)
T PRK08641 162 GAVLDDEGVCRGIVAQD------LFT---MEIESFPADAVIMATGGPGIIF 203 (589)
T ss_pred EEEECCCCEEEEEEEEE------CCC---CcEEEEECCEEEECCCCCcCCC
Confidence 99985 68999998742 111 1245789999999999988543
No 38
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.51 E-value=3.2e-13 Score=133.30 Aligned_cols=136 Identities=26% Similarity=0.393 Sum_probs=90.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHh----------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL---------------- 153 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~---------------- 153 (356)
+|||+|||||++|++||+.|+++ |++|+||||...+|.....++.++...+..- ..++....
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l-~~~~~~~~~~~~~~~~~~~~~~~~ 82 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNSAGAKNVTGGRLYAHSLEHI-IPGFADSAPVERLITHEKLAFMTE 82 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCCCCCcccccceechhhHHHH-hhhhhhcCcccceeeeeeEEEEcC
Confidence 59999999999999999999999 9999999999888765444443332111000 00000000
Q ss_pred -C---CCcccc-----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCC
Q 018414 154 -G---IDYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM 224 (356)
Q Consensus 154 -G---~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g 224 (356)
+ +.+... ....+......|.+.|.+.+. +.|++++++++|+++..+++++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~-~~Gv~i~~~~~V~~i~~~~g~v~~v~~~-------------- 147 (428)
T PRK10157 83 KSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAE-EAGAQLITGIRVDNLVQRDGKVVGVEAD-------------- 147 (428)
T ss_pred CCceeeccccccccCCCCCceeeEHHHHHHHHHHHHH-HCCCEEECCCEEEEEEEeCCEEEEEEcC--------------
Confidence 0 011000 001122345677778888776 6799999999999998888877665432
Q ss_pred CCeEEEcCEEEEcCCCCCC
Q 018414 225 DPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 225 ~~~~i~Ak~VI~AtGg~~~ 243 (356)
..+++|+.||+|+|..+.
T Consensus 148 -g~~i~A~~VI~A~G~~s~ 165 (428)
T PRK10157 148 -GDVIEAKTVILADGVNSI 165 (428)
T ss_pred -CcEEECCEEEEEeCCCHH
Confidence 357899999999997653
No 39
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.50 E-value=2.1e-13 Score=131.56 Aligned_cols=154 Identities=25% Similarity=0.453 Sum_probs=115.6
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC-CCccccCCccch----------------------------hhhc
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP-GGGAWLGGQLFS----------------------------AMVV 142 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~-Gg~~~~~g~~~~----------------------------~~~~ 142 (356)
||+|||+|.|||++|+.|++. .+|+||-|.... +.+.|.+|.+.. ..+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~--~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv 86 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS--FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIV 86 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC--CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 999999999999999999875 899999998754 455676665321 0111
Q ss_pred -c-chHHHHHHHhCCCccccCC--eEEEe----------c-----hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-
Q 018414 143 -R-KPAHIFLDELGIDYDEQDN--YVVIK----------H-----AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG- 202 (356)
Q Consensus 143 -~-~~~~~~l~~~G~~~~~~~~--~~~~~----------~-----~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~- 202 (356)
+ ...++||.++|++|+...+ |.+.. | .+.++..|++++++.++|+++.++.+.+|+.+++
T Consensus 87 ~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~ 166 (518)
T COG0029 87 SEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGI 166 (518)
T ss_pred HhHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCc
Confidence 1 1457899999999998753 44321 1 3678899999998789999999999999999988
Q ss_pred eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCc
Q 018414 203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGM 257 (356)
Q Consensus 203 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~ 257 (356)
.+.|+.+.+ .. ++...++|+.||+||||.|.+.....+.....|.
T Consensus 167 ~~~Gv~~~~------~~----~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~Gd 211 (518)
T COG0029 167 GVAGVLVLN------RN----GELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGD 211 (518)
T ss_pred eEeEEEEec------CC----CeEEEEecCeEEEecCCCcccccccCCCcccccc
Confidence 555888742 10 1257899999999999999777655555555555
No 40
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.50 E-value=2.1e-13 Score=133.27 Aligned_cols=140 Identities=23% Similarity=0.278 Sum_probs=95.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhcc---chHH---HHHHHh-----CCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR---KPAH---IFLDEL-----GIDYD 158 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~---~~~~---~~l~~~-----G~~~~ 158 (356)
+|||+||||||||++||+.|++. |++|+|+||+..+|...+.++.+....+.. .... ...... +-.+.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceE
Confidence 59999999999999999999999 999999999999987665533332221111 0100 000000 00000
Q ss_pred --ccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414 159 --EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236 (356)
Q Consensus 159 --~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~ 236 (356)
......+......|.+.|.+++. +.|++++.+++++++..+++.+..+.... ..+++||+||+
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~-~aGae~~~~~~~~~~~~~~~~~~~~~~~~--------------~~e~~a~~vI~ 146 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAE-EAGAELYPGTRVTGVIREDDGVVVGVRAG--------------DDEVRAKVVID 146 (396)
T ss_pred EecCCCceEEEEhHHhhHHHHHHHH-HcCCEEEeceEEEEEEEeCCcEEEEEEcC--------------CEEEEcCEEEE
Confidence 00011233455788888887876 78999999999999999887665554431 27899999999
Q ss_pred cCCCCCCCC
Q 018414 237 SCGHDGPFG 245 (356)
Q Consensus 237 AtGg~~~~~ 245 (356)
|+|..+.+.
T Consensus 147 AdG~~s~l~ 155 (396)
T COG0644 147 ADGVNSALA 155 (396)
T ss_pred CCCcchHHH
Confidence 999877554
No 41
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.49 E-value=3.3e-13 Score=136.04 Aligned_cols=141 Identities=26% Similarity=0.423 Sum_probs=99.1
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC-CCCc-cccCCccch-------------hh-------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGG-AWLGGQLFS-------------AM------------- 140 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~-~Gg~-~~~~g~~~~-------------~~------------- 140 (356)
.++||||||+|.||++||+.++ +.+|+||||... .+++ .|.+|.+.. ..
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~v 84 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAVA 84 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC---cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence 4689999999999999999995 469999999976 3333 343332210 00
Q ss_pred --hc-c-chHHHHHHHhCCCccccCC--eEE----------Ee------chHHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414 141 --VV-R-KPAHIFLDELGIDYDEQDN--YVV----------IK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198 (356)
Q Consensus 141 --~~-~-~~~~~~l~~~G~~~~~~~~--~~~----------~~------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~ 198 (356)
+. + ...++||+++|++|+.... +.. .. ....+...|.+.+.+..|+++++++.+++|+
T Consensus 85 ~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~~~~~~~~~~r~~~~~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li 164 (513)
T PRK07512 85 ALITAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARRLL 164 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCccccCCCCccccccccCccCCcEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEECcChhhee
Confidence 00 0 1346899999999965321 111 11 1346778888877645699999999999998
Q ss_pred EeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 199 ~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.++++|.|+.+.+ .+....+.||.||+||||++.
T Consensus 165 ~~~g~v~Gv~~~~-----------~~~~~~i~Ak~VVLATGG~~~ 198 (513)
T PRK07512 165 VDDGAVAGVLAAT-----------AGGPVVLPARAVVLATGGIGG 198 (513)
T ss_pred ecCCEEEEEEEEe-----------CCeEEEEECCEEEEcCCCCcC
Confidence 8888999987642 012247899999999999874
No 42
>PRK08275 putative oxidoreductase; Provisional
Probab=99.48 E-value=6.8e-13 Score=135.02 Aligned_cols=146 Identities=25% Similarity=0.400 Sum_probs=100.5
Q ss_pred CcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccc--cCCcc----------ch-----------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAW--LGGQL----------FS----------------- 138 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~--~~g~~----------~~----------------- 138 (356)
.++||||||+|.||++||+.+++. +|.+|+||||....+++.. ..+.+ +.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~ 87 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQK 87 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHH
Confidence 358999999999999999999975 2689999999876433221 11110 00
Q ss_pred ---hhhcc-chHHHHHHHhCCCccccC--CeEE--E----------echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414 139 ---AMVVR-KPAHIFLDELGIDYDEQD--NYVV--I----------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (356)
Q Consensus 139 ---~~~~~-~~~~~~l~~~G~~~~~~~--~~~~--~----------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~ 200 (356)
.+..+ ...++||+++|++|.... .+.. . .....+.+.|.+.+. +.|+++++++.+++|+.+
T Consensus 88 ~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~~~v~~Li~~ 166 (554)
T PRK08275 88 AVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLK-RARVLITNRIMATRLLTD 166 (554)
T ss_pred HHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHH-HCCCEEEcceEEEEEEEc
Confidence 00001 135689999999987532 1211 0 023456778877776 679999999999999987
Q ss_pred -CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 201 -GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 201 -~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
++++.|+...+ .. +++...++||.||+|||+.+..
T Consensus 167 ~~g~v~Gv~~~~------~~---~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 167 ADGRVAGALGFD------CR---TGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred CCCeEEEEEEEe------cC---CCcEEEEECCEEEECCCCcccc
Confidence 77899987632 11 1234578999999999998754
No 43
>PRK10015 oxidoreductase; Provisional
Probab=99.48 E-value=3.4e-13 Score=133.06 Aligned_cols=139 Identities=22% Similarity=0.407 Sum_probs=91.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhc---c-----chHHHHHHH---------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV---R-----KPAHIFLDE--------- 152 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~---~-----~~~~~~l~~--------- 152 (356)
+|||||||||++|++||+.|+++ |++|+||||...+|.....++.+....+. . .+.......
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 83 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE 83 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence 59999999999999999999999 99999999998876543333332211100 0 000000000
Q ss_pred --hCCCccccC-----CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC
Q 018414 153 --LGIDYDEQD-----NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (356)
Q Consensus 153 --~G~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (356)
..+.+.... ...+......|.+.|.+++. +.|++++.+++|+++..+++++.++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~-~~Gv~i~~~~~V~~i~~~~~~v~~v~~~--------------- 147 (429)
T PRK10015 84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAE-QAGAQFIPGVRVDALVREGNKVTGVQAG--------------- 147 (429)
T ss_pred CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHH-HcCCEEECCcEEEEEEEeCCEEEEEEeC---------------
Confidence 011111100 00122344667777888776 6799999999999998887887776542
Q ss_pred CeEEEcCEEEEcCCCCCCCC
Q 018414 226 PNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 226 ~~~i~Ak~VI~AtGg~~~~~ 245 (356)
..+++|+.||+|+|..+.++
T Consensus 148 ~~~i~A~~VI~AdG~~s~v~ 167 (429)
T PRK10015 148 DDILEANVVILADGVNSMLG 167 (429)
T ss_pred CeEEECCEEEEccCcchhhh
Confidence 25799999999999876544
No 44
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.48 E-value=5.9e-13 Score=136.20 Aligned_cols=143 Identities=22% Similarity=0.312 Sum_probs=98.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-----------h----hh-------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-----------S----AM------------- 140 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-----------~----~~------------- 140 (356)
++||||||+|.||++||+.|++ +.+|+|+||....++++ +.+|.+. . ..
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~--~~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v 82 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP--RARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA 82 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh--CCCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence 5899999999999999999986 48999999986544322 2221110 0 00
Q ss_pred --hc--cchHHHHHHHhCCCccccCC--eE-----------------EEe-----chHHHHHHHHHHHHcCCCcEEEcCe
Q 018414 141 --VV--RKPAHIFLDELGIDYDEQDN--YV-----------------VIK-----HAALFTSTIMSKLLARPNVKLFNAV 192 (356)
Q Consensus 141 --~~--~~~~~~~l~~~G~~~~~~~~--~~-----------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~ 192 (356)
+. ....++||+++|++|+...+ +. ... ....+...|++.+. +.||++++++
T Consensus 83 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~-~~gv~i~~~~ 161 (583)
T PRK08205 83 EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCV-KHGVEFFNEF 161 (583)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHH-hcCCEEEeCC
Confidence 00 01346899999999965321 11 000 13456777877776 6799999999
Q ss_pred EEEEEEEeC----CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 193 AAEDLIVKG----GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 193 ~v~~i~~~~----~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
.+++|+.++ ++|.|+...+ .. +++...+.||.||+|||+++..
T Consensus 162 ~v~~Li~~~~~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 162 YVLDLLLTETPSGPVAAGVVAYE------LA---TGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred EEEEEEecCCccCCcEEEEEEEE------cC---CCeEEEEEeCeEEECCCCCccc
Confidence 999999875 7899987631 11 1234578999999999998743
No 45
>PRK06185 hypothetical protein; Provisional
Probab=99.47 E-value=1.8e-12 Score=126.90 Aligned_cols=137 Identities=25% Similarity=0.381 Sum_probs=90.5
Q ss_pred CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC-----------
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID----------- 156 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~----------- 156 (356)
..++||+|||||++|+++|+.|++. |++|+|||+....... ..+ ........+.|+++|+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~~~~~~--~r~-----~~l~~~s~~~L~~lG~~~~~~~~~~~~~ 75 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHADFLRD--FRG-----DTVHPSTLELMDELGLLERFLELPHQKV 75 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCcc--ccC-----ceeChhHHHHHHHcCChhHHhhccccee
Confidence 3469999999999999999999999 9999999998533110 000 00111122333333320
Q ss_pred ----------------cccc---CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414 157 ----------------YDEQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 217 (356)
Q Consensus 157 ----------------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~ 217 (356)
+... ..+....+...+.+.|++.+.+..|++++++++++++..+++++.++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~------ 149 (407)
T PRK06185 76 RTLRFEIGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRART------ 149 (407)
T ss_pred eeEEEEECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEc------
Confidence 0000 011122344567778888776567999999999999998888887776531
Q ss_pred cCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 218 HDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.+ ...+++|+.||.|+|.++.
T Consensus 150 -~~----g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 150 -PD----GPGEIRADLVVGADGRHSR 170 (407)
T ss_pred -CC----CcEEEEeCEEEECCCCchH
Confidence 00 1257999999999998764
No 46
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.47 E-value=8.7e-13 Score=131.57 Aligned_cols=137 Identities=20% Similarity=0.335 Sum_probs=97.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccc-------------hhh----------------h
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF-------------SAM----------------V 141 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~-------------~~~----------------~ 141 (356)
+||+|||+|++|++||+.|++. |.+|+||||....+.+.+..+.+. ... +
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~ 80 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVI 80 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 6999999999999999999999 999999999864333333222210 000 0
Q ss_pred cc-chHHHHHHHhCCCccccC-----CeEEE-----echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEc
Q 018414 142 VR-KPAHIFLDELGIDYDEQD-----NYVVI-----KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 210 (356)
Q Consensus 142 ~~-~~~~~~l~~~G~~~~~~~-----~~~~~-----~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~ 210 (356)
.+ ...++||.++|++|+... .++.. .....+.+.|.+.+. +.|++++++ .++++..+++++.++.+.
T Consensus 81 ~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~-~~gv~i~~~-~v~~l~~~~g~v~Gv~~~ 158 (466)
T PRK08401 81 SKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHAR-ELGVNFIRG-FAEELAIKNGKAYGVFLD 158 (466)
T ss_pred HHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHH-hcCCEEEEe-EeEEEEeeCCEEEEEEEC
Confidence 00 134589999999986431 12211 123567788888776 679999876 788998878888888763
Q ss_pred ceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 211 WALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
...++++.||+|||+++...
T Consensus 159 ---------------g~~i~a~~VVLATGG~~~~~ 178 (466)
T PRK08401 159 ---------------GELLKFDATVIATGGFSGLF 178 (466)
T ss_pred ---------------CEEEEeCeEEECCCcCcCCC
Confidence 25689999999999988643
No 47
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.46 E-value=9.9e-13 Score=143.75 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=100.6
Q ss_pred CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc-cCCcc--------------------chhhh-----
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW-LGGQL--------------------FSAMV----- 141 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~-~~g~~--------------------~~~~~----- 141 (356)
+.++||||||+|.||++||+.+++. |.+|+||||....||++. .++.+ ....+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~~GG~s~~s~ggi~~~~t~~q~~~gi~D~~~~~~~d~~~~~~~ 485 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAKLGGNSAKATSGINGWGTRAQAKQDVLDGGKFFERDTHLSGKG 485 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCCCCCchhhcccccccCCchhhhhhcccccHHHHHHHHHHhccC
Confidence 4579999999999999999999999 999999999988776542 11110 00000
Q ss_pred -----------c-c-chHHHHHHHhCCCccccC-----Ce---EEE---------echHHHHHHHHHHHHc--CCCcEEE
Q 018414 142 -----------V-R-KPAHIFLDELGIDYDEQD-----NY---VVI---------KHAALFTSTIMSKLLA--RPNVKLF 189 (356)
Q Consensus 142 -----------~-~-~~~~~~l~~~G~~~~~~~-----~~---~~~---------~~~~~~~~~l~~~~~~--~~gv~i~ 189 (356)
. + ...++||+++|++|.... .+ ... .....+...|.+.+.+ +.|++|+
T Consensus 486 ~~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~~gg~~~~r~~~~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~ 565 (1167)
T PTZ00306 486 GHCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQLGGASRKRCHRAPDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIM 565 (1167)
T ss_pred CCCCHHHHHHHHHhhHHHHHHHHHcCCCceeeeccCCCCCCceeecCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEE
Confidence 0 0 134689999999885410 01 000 0123455666665543 2599999
Q ss_pred cCeEEEEEEEeC---------CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 190 NAVAAEDLIVKG---------GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 190 ~~~~v~~i~~~~---------~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+++++++|+.++ ++|.||.+.+ . ...+++...++||.||+||||++..
T Consensus 566 ~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~------~-~~~~g~~~~i~AkaVILATGGf~~N 622 (1167)
T PTZ00306 566 TETTVTSLLSESSARPDGVREIRVTGVRYKQ------A-SDASGQVMDLLADAVILATGGFSND 622 (1167)
T ss_pred ECCEEEEEEecCCcccCCCccceEEEEEEEe------c-ccCCCcEEEEEeceEEEecCCcccC
Confidence 999999999864 2799998752 1 0012245689999999999998853
No 48
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.46 E-value=1.2e-12 Score=133.79 Aligned_cols=142 Identities=19% Similarity=0.320 Sum_probs=96.1
Q ss_pred cEEEECCCHHHHHHHHHhh----cCCCCeEEEEeccCCCCCccccCCc--c------------chhh-------------
Q 018414 92 DVVVVGAGSAGLSCAYELS----KNPNIQIAIIEQSVSPGGGAWLGGQ--L------------FSAM------------- 140 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La----~~~G~~V~llEk~~~~Gg~~~~~g~--~------------~~~~------------- 140 (356)
||||||+|.|||+||+.++ +. |.+|+||||....+.+++.+|. + +...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~-G~~VilieK~~~~~s~s~A~G~~gi~~~~~~~~g~Ds~e~~~~d~~~~~~gl~d 79 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK-GLKIVLVEKANLERSGAVAQGLSAINTYLGTRFGENNAEDYVRYVRTDLMGLVR 79 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC-CCeEEEEEccCCCCCCccccccchhhhhhhcccCCCCHHHHHHHHHHhcCCCCc
Confidence 8999999999999999998 67 9999999998654434433331 0 0000
Q ss_pred ------hcc--chHHHHHHHhCCCccccC-CeEEEe--------chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--
Q 018414 141 ------VVR--KPAHIFLDELGIDYDEQD-NYVVIK--------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-- 201 (356)
Q Consensus 141 ------~~~--~~~~~~l~~~G~~~~~~~-~~~~~~--------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-- 201 (356)
+.+ ...++||.++|++|+... ...... ....+...+...+. +.++++++++.+++|+.++
T Consensus 80 ~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G~~~~~g~~~~~~gG~~~~r~l~~~l~-~~~~~i~~~~~v~~Ll~d~~~ 158 (614)
T TIGR02061 80 EDLIFDMARHVDDSVHLFEEWGLPLWIKPEDGKYVREGRWQIMIHGESYKPIVAEAAK-NALGDIFERIFIVKLLLDKNT 158 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCceecCCCCccccCCCcccCcCchhHHHHHHHHHH-hCCCeEEcccEEEEEEecCCC
Confidence 001 135689999999996531 111111 13344445555444 5578999999999999865
Q ss_pred -CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 202 -GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 202 -~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
++|.||.+.+ .. +++...+.||.||+|||+++..
T Consensus 159 ~GrV~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~l 193 (614)
T TIGR02061 159 PNRIAGAVGFN------VR---ANEVHVFKAKTVIVAAGGAVNV 193 (614)
T ss_pred CCeEEEEEEEE------eC---CCcEEEEECCEEEECCCccccc
Confidence 7999987632 11 1234679999999999998753
No 49
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.45 E-value=1e-12 Score=132.43 Aligned_cols=140 Identities=24% Similarity=0.329 Sum_probs=98.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccch-------------hh---------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLFS-------------AM--------------- 140 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~~-------------~~--------------- 140 (356)
++||||||+|.||++||+.++ . |.+|+||||....++++ +.+|.+.. ..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~-~-g~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~v~~ 80 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELC-H-EYNVIIITKKTKRNSNSHLAQGGIAAAVATYDSPNDHFEDTLVAGCHHNNERAVRY 80 (510)
T ss_pred ccCEEEECccHHHHHHHHHhh-c-CCCEEEEeccCCCCCCchhcCccceecccCCCCHHHHHHHHHHhccCcCCHHHHHH
Confidence 589999999999999999996 4 78999999998766655 33332210 00
Q ss_pred hcc--chHHHHHHHhCCCccccC--Ce----------EEEe------chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe
Q 018414 141 VVR--KPAHIFLDELGIDYDEQD--NY----------VVIK------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK 200 (356)
Q Consensus 141 ~~~--~~~~~~l~~~G~~~~~~~--~~----------~~~~------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~ 200 (356)
+.+ ...++||.++|++|+... .+ +... ....+.+.|.+.+. .|+++++++.+++++.+
T Consensus 81 ~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~gd~~g~~i~~~L~~~~~--~gV~i~~~~~v~~Li~~ 158 (510)
T PRK08071 81 LVEEGPKEIQELIENGMPFDGDETGPLHLGKEGAHRKRRILHAGGDATGKNLLEHLLQELV--PHVTVVEQEMVIDLIIE 158 (510)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCceeeccCcCccCCeEEecCCCCcHHHHHHHHHHHHh--cCCEEEECeEhhheeec
Confidence 001 134678999999997431 11 1111 12456677777664 58999999999999988
Q ss_pred CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 201 GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 201 ~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+++|.|+.+.+ . +++...++||.||+|||+++.
T Consensus 159 ~g~v~Gv~~~~------~----~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 159 NGRCIGVLTKD------S----EGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred CCEEEEEEEEE------C----CCcEEEEEcCeEEEecCCCcc
Confidence 88999987742 0 123457899999999999874
No 50
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.45 E-value=1.2e-12 Score=133.11 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=38.2
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG 133 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~ 133 (356)
.+|||||||+| +|++||+.+++. |.+|+||||....||++...
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~-G~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHEL-GLSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHC-CCcEEEEecCCCCcCcccCc
Confidence 36999999999 899999999999 99999999998888876433
No 51
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.45 E-value=1.4e-12 Score=131.48 Aligned_cols=141 Identities=24% Similarity=0.416 Sum_probs=96.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc-CC-ccc-----------------------hhh----
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL-GG-QLF-----------------------SAM---- 140 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~-~g-~~~-----------------------~~~---- 140 (356)
++||||||+| +|++||++|++. |.+|+||||....||.+.. ++ .+. ...
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~-G~~V~vlEk~~~~Gg~t~~~~g~g~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 84 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAARE-GLSVALVEATDKFGGTTAYSGGGGMWFPCNPVLRRAGTDDTIEDALEYYHAVVGDR 84 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHC-CCcEEEEecCCCCCcceecCCCceeccCCChhhhhcCcchHHHHHHHHHHHHhccc
Confidence 6899999999 999999999999 9999999999876654421 11 110 000
Q ss_pred --------hcc--chHHHHHHH-hCCCccccC--------------C-eEEEe---------------------------
Q 018414 141 --------VVR--KPAHIFLDE-LGIDYDEQD--------------N-YVVIK--------------------------- 167 (356)
Q Consensus 141 --------~~~--~~~~~~l~~-~G~~~~~~~--------------~-~~~~~--------------------------- 167 (356)
+.+ ...++||++ .|++|.... . .....
T Consensus 85 ~~~~l~~~~~~~s~~~i~wl~~~~Gv~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (513)
T PRK12837 85 TPRDLQETYVRGGAPLIEYLEQDEHFEFAELPWPDYFGKAPKARADGQRHIVPKPLPAAALGELREQIRGPLDTERLGAP 164 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCCcCCCCCCcccCCcceeecCCCChHHhchhHHhccCccchhhhccC
Confidence 000 123578876 588774310 0 00000
Q ss_pred ------chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcC-EEEEcCCC
Q 018414 168 ------HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGH 240 (356)
Q Consensus 168 ------~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak-~VI~AtGg 240 (356)
....+...+++.+.++.|+++++++++++|+.++++|.||.... +++..+++|+ .||+|||+
T Consensus 165 ~~~~~~~G~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~-----------~g~~~~i~A~k~VIlAtGG 233 (513)
T PRK12837 165 PPDYLVGGRALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVER-----------GGERRRVRARRGVLLAAGG 233 (513)
T ss_pred CCCcccccHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEE-----------CCcEEEEEeCceEEEeCCC
Confidence 01245566677666567999999999999999889999997641 1234679996 79999999
Q ss_pred CCC
Q 018414 241 DGP 243 (356)
Q Consensus 241 ~~~ 243 (356)
++.
T Consensus 234 ~~~ 236 (513)
T PRK12837 234 FEQ 236 (513)
T ss_pred ccC
Confidence 864
No 52
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.44 E-value=1.6e-12 Score=132.33 Aligned_cols=141 Identities=28% Similarity=0.442 Sum_probs=98.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCccc-----------------------hhhh----
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQLF-----------------------SAMV---- 141 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~~-----------------------~~~~---- 141 (356)
++||+|||+|.+|+++|+.|++. |++|+||||....||++ +.+|++. ....
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~-G~~v~liEk~~~~gG~~~~s~g~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~ 84 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADS-GLEPLIVEKQDKVGGSTAMSGGVLWLPNNPLMKAAGVPDSHEDALAYLDAVVGDQG 84 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCceeceecceeecCChHHHHHcCcHHHHHHHHHHHHHHhcccc
Confidence 68999999999999999999999 99999999987777654 2222210 0000
Q ss_pred -----------c-c-chHHHHHHHhCCCccccC---CeE----------EE-----------------------------
Q 018414 142 -----------V-R-KPAHIFLDELGIDYDEQD---NYV----------VI----------------------------- 166 (356)
Q Consensus 142 -----------~-~-~~~~~~l~~~G~~~~~~~---~~~----------~~----------------------------- 166 (356)
. + ...++||+++|++|.... .|+ ..
T Consensus 85 ~~~~~~~~~~~~~~s~e~i~wL~~~Gv~f~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (557)
T PRK12844 85 PASSPERREAYLRAGPAMVSFLEHQGMRFARCEGWSDYYPDLPGGEARGRSLEAKPFDARKLGPWFDRLNPPMATPPGTV 164 (557)
T ss_pred cCCCHHHHHHHHhhhHHHHHHHHhcCceeEeCCCCCCCCCCCCCCcCCCceecCCCCChhHhhHHHHhhcCccccccccc
Confidence 0 0 134689999999885321 000 00
Q ss_pred ----------------------------------------echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEE
Q 018414 167 ----------------------------------------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG 206 (356)
Q Consensus 167 ----------------------------------------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g 206 (356)
.....+...|.+.+. +.|++++++++|++|+.++++|.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~G~~l~~~l~~~~~-~~gv~i~~~~~v~~Li~~~g~v~G 243 (557)
T PRK12844 165 VMTDEYKWLQLIKRTPRGMRTAARVGARTLAARIRGQKLLTNGAALIGRMLEAAL-AAGVPLWTNTPLTELIVEDGRVVG 243 (557)
T ss_pred ccHHHHHHHHhhccCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEE
Confidence 001234455556665 679999999999999999999999
Q ss_pred EEEcceeeecccCCCCCCCCeEEEcC-EEEEcCCCCCC
Q 018414 207 VVTNWALVSMNHDTQSCMDPNVMEAK-VVVSSCGHDGP 243 (356)
Q Consensus 207 v~~~~~~~~~~~~~~~~g~~~~i~Ak-~VI~AtGg~~~ 243 (356)
|.+.. +++...+.|+ .||+|||+++.
T Consensus 244 v~~~~-----------~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 244 VVVVR-----------DGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred EEEEE-----------CCeEEEEEecceEEEecCCccC
Confidence 88741 1234678895 79999999875
No 53
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.44 E-value=3.8e-12 Score=118.48 Aligned_cols=137 Identities=22% Similarity=0.336 Sum_probs=87.3
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhcc--chHHHHHHHh-CC----------Cc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR--KPAHIFLDEL-GI----------DY 157 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~--~~~~~~l~~~-G~----------~~ 157 (356)
|||+|||||++|+++|+.|++. |.+|+|+||...++. .+.+..+....+.. .......... .. .+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSFPRY-KPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCc-ccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 6999999999999999999999 999999999976653 22222221111100 0000000000 00 00
Q ss_pred cccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414 158 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A 237 (356)
.....+....+...+.+.|.+.+. +.|++++++++++++..+++.+... ... +..++++|+||+|
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~-~~gv~~~~~~~v~~~~~~~~~~~~~-~~~-------------~~~~~~a~~vv~a 143 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQ-EAGAELRLGTTVLDVEIHDDRVVVI-VRG-------------GEGTVTAKIVIGA 143 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHH-HcCCEEEeCcEEeeEEEeCCEEEEE-EcC-------------ccEEEEeCEEEEC
Confidence 001122233455677788888876 6799999999999998887765322 211 1367999999999
Q ss_pred CCCCCCC
Q 018414 238 CGHDGPF 244 (356)
Q Consensus 238 tGg~~~~ 244 (356)
+|.++.+
T Consensus 144 ~G~~s~~ 150 (295)
T TIGR02032 144 DGSRSIV 150 (295)
T ss_pred CCcchHH
Confidence 9987643
No 54
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.43 E-value=2.8e-12 Score=122.27 Aligned_cols=134 Identities=27% Similarity=0.338 Sum_probs=87.6
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhh--------h----------------------
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM--------V---------------------- 141 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~--------~---------------------- 141 (356)
||+|||||++|+++|++|+++ |++|+|||++...++.+...+.++... .
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G~~V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-GHSVTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGIPV 79 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-TSEEEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CEEEECcCHHHHHHHHHHHHC-CCeEEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcCccc
Confidence 899999999999999999999 999999999954443332221111000 0
Q ss_pred ----------ccc-h-------HHHHHHHhCCCcccc-------------CC----e----EEEechHHHHHHHHHHHHc
Q 018414 142 ----------VRK-P-------AHIFLDELGIDYDEQ-------------DN----Y----VVIKHAALFTSTIMSKLLA 182 (356)
Q Consensus 142 ----------~~~-~-------~~~~l~~~G~~~~~~-------------~~----~----~~~~~~~~~~~~l~~~~~~ 182 (356)
... . ..+.++..++++... .. + ....+...+.+.|.+.+.
T Consensus 80 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~~~- 158 (358)
T PF01266_consen 80 GFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAEAQ- 158 (358)
T ss_dssp EEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHHHH-
T ss_pred ccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHHHH-
Confidence 000 0 012223344421100 00 0 012356788889888887
Q ss_pred CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 183 ~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+.|++++++++|++|..+++++.+|.+.+ ..++||.||+|+|.++
T Consensus 159 ~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~---------------g~i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 159 RAGVEIRTGTEVTSIDVDGGRVTGVRTSD---------------GEIRADRVVLAAGAWS 203 (358)
T ss_dssp HTT-EEEESEEEEEEEEETTEEEEEEETT---------------EEEEECEEEE--GGGH
T ss_pred Hhhhhccccccccchhhcccccccccccc---------------cccccceeEecccccc
Confidence 56999999999999999999999998863 4499999999999543
No 55
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.43 E-value=1.9e-12 Score=132.66 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=95.0
Q ss_pred EEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC--ccccCCcc------------ch-------------------h
Q 018414 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--GAWLGGQL------------FS-------------------A 139 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg--~~~~~g~~------------~~-------------------~ 139 (356)
|||||+|.||++||+.+++. |.+|+||||...+++ +.+..|.+ +. .
T Consensus 1 VlVVG~G~AGl~AAl~Aae~-G~~VilleK~~~~~~g~s~~a~Ggi~a~~~~~~~~ds~e~~~~d~~~~g~~~~d~~lv~ 79 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL-GYHVKLFSYVDAPRRAHSIAAQGGINGAVNTKGDGDSPWRHFDDTVKGGDFRARESPVK 79 (603)
T ss_pred CEEECccHHHHHHHHHHHHc-CCCEEEEEecCCCCCccchhhhhhhhhhcccCCCCCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 69999999999999999999 999999999874432 22222210 00 0
Q ss_pred hhc--cchHHHHHHHhCCCccccCC--eE--E--------E-----echHHHHHHHHHHHHc---CCCcEEEcCeEEEEE
Q 018414 140 MVV--RKPAHIFLDELGIDYDEQDN--YV--V--------I-----KHAALFTSTIMSKLLA---RPNVKLFNAVAAEDL 197 (356)
Q Consensus 140 ~~~--~~~~~~~l~~~G~~~~~~~~--~~--~--------~-----~~~~~~~~~l~~~~~~---~~gv~i~~~~~v~~i 197 (356)
.+. ....++||+++|++|+...+ +. . . .....+...|.+.+.+ +.||++++++.+++|
T Consensus 80 ~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~tG~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~L 159 (603)
T TIGR01811 80 RLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQVSRTAYARGQTGQQLLLALDSALRRQIAAGLVEKYEGWEMLDI 159 (603)
T ss_pred HHHHHHHHHHHHHHHcCCEEEecCCCccccccccCcccCcceecCCCChhHHHHHHHHHHHhhhccCCcEEEeCcEEEEE
Confidence 000 11356899999999865321 00 0 0 1234555566555532 358999999999999
Q ss_pred EEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 198 IVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 198 ~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+.++ ++|.||.+.+ .. +++...+.||.||+||||++..
T Consensus 160 i~dd~grV~GV~~~~------~~---~g~~~~i~AkaVVLATGG~g~~ 198 (603)
T TIGR01811 160 IVVDGNRARGIIARN------LV---TGEIETHSADAVILATGGYGNV 198 (603)
T ss_pred EEcCCCEEEEEEEEE------CC---CCcEEEEEcCEEEECCCCCcCc
Confidence 9864 5899998742 11 1234679999999999998743
No 56
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.43 E-value=2e-12 Score=132.21 Aligned_cols=40 Identities=30% Similarity=0.609 Sum_probs=36.6
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
.++||||||+|.+|++||+.++++ |++|+||||....||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~-G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAAR-GLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEcCCCCCch
Confidence 368999999999999999999999 9999999999877764
No 57
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.43 E-value=2.1e-12 Score=122.96 Aligned_cols=135 Identities=23% Similarity=0.297 Sum_probs=85.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC---------c---
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------Y--- 157 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~--- 157 (356)
+|||+|||||++|+++|+.|+++ |++|+|+||...+..... +. .......+.|+++|+. .
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~~~~~~--~~-----~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 72 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDPRPKGR--GI-----GLSPNSLRILQRLGLLDEILARGSPHEVM 72 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSCCCSSS--SE-----EEEHHHHHHHHHTTEHHHHHHHSEEECEE
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhccccccccc--cc-----ccccccccccccccchhhhhhhcccccce
Confidence 38999999999999999999999 999999999876532211 10 1111222333333321 0
Q ss_pred -----cc---------------------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcc
Q 018414 158 -----DE---------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW 211 (356)
Q Consensus 158 -----~~---------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~ 211 (356)
.. ........+...+.+.|++.+. +.+++++++++++++..+++.+..+....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~-~~gv~i~~~~~v~~~~~d~~~~~~~~~~~ 151 (356)
T PF01494_consen 73 RIFFYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAE-ERGVDIRFGTRVVSIEQDDDGVTVVVRDG 151 (356)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHH-HHTEEEEESEEEEEEEEETTEEEEEEEET
T ss_pred eeEeecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhh-hhhhhheeeeecccccccccccccccccc
Confidence 00 0011122344677778888876 45799999999999998888766554421
Q ss_pred eeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 212 ALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 212 ~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
. +++..+++||.||.|+|..|.
T Consensus 152 -------~---~g~~~~i~adlvVgADG~~S~ 173 (356)
T PF01494_consen 152 -------E---DGEEETIEADLVVGADGAHSK 173 (356)
T ss_dssp -------C---TCEEEEEEESEEEE-SGTT-H
T ss_pred -------c---CCceeEEEEeeeecccCcccc
Confidence 1 123458999999999997763
No 58
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.43 E-value=2.1e-12 Score=138.05 Aligned_cols=146 Identities=20% Similarity=0.340 Sum_probs=98.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccC--Ccc--------------chhh------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLG--GQL--------------FSAM------------ 140 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~--g~~--------------~~~~------------ 140 (356)
.++||+|||+|.||++||+.+++. |.+|+||||.....++.+.. +.+ +...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~-G~~V~lleK~~~~~sg~~~~g~~gi~~~~~~~~ds~e~~~~Dt~~~g~gl~d~~~ 90 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEH-GANVLLLEKAHVRHSGALAMGMDGVNNAVIPGKAEPEDYVAEITRANDGIVNQRT 90 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccccCCCcccCCchhhhcccCCCccCHHHHHHHHHhhcCCCCCHHH
Confidence 368999999999999999999999 99999999986422111110 000 0000
Q ss_pred ----hcc-chHHHHHHHhCCCccccCC--eEE--E----------echHHHHHHHHHHHHcC---CCcEEEcCeEEEEEE
Q 018414 141 ----VVR-KPAHIFLDELGIDYDEQDN--YVV--I----------KHAALFTSTIMSKLLAR---PNVKLFNAVAAEDLI 198 (356)
Q Consensus 141 ----~~~-~~~~~~l~~~G~~~~~~~~--~~~--~----------~~~~~~~~~l~~~~~~~---~gv~i~~~~~v~~i~ 198 (356)
+.+ ...++||+++|++|+...+ +.. + .....+...|++.+.+. .+++++.++.+++++
T Consensus 91 v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~~~~~~~~~~~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li 170 (897)
T PRK13800 91 VYQTATRGFAMVQRLERYGVKFEKDEHGEYAVRRVHRSGSYVLPMPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVL 170 (897)
T ss_pred HHHHHHhHHHHHHHHHHcCCceeeCCCCCEeeeeeccCCCccccCCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEE
Confidence 000 1346899999999976422 110 0 02344555666665432 478999999899999
Q ss_pred EeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 199 VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 199 ~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
.++++|.|+...+ .. +++...+.||.||+||||++..
T Consensus 171 ~~~g~v~Gv~~~~------~~---~g~~~~i~AkaVILATGG~g~~ 207 (897)
T PRK13800 171 TEGGRAVGAAALN------TR---TGEFVTVGAKAVILATGPCGRL 207 (897)
T ss_pred eeCCEEEEEEEEe------cC---CCcEEEEECCEEEECCCccccC
Confidence 8889999987632 11 2245689999999999998765
No 59
>PRK08013 oxidoreductase; Provisional
Probab=99.43 E-value=4.1e-12 Score=124.34 Aligned_cols=138 Identities=20% Similarity=0.310 Sum_probs=88.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC-------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------- 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~------------- 156 (356)
++||+|||||++|+++|+.|+++ |++|+|+||.+.+..... .+.............+.|+++|+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~~~~~~g-~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~ 80 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVPEPLAAD-APPALRVSAINAASEKLLTRLGVWQDILARRASCYHG 80 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCCcccccC-CCCCceeeecchhHHHHHHHcCCchhhhhhcCccccE
Confidence 48999999999999999999999 999999999875321000 000000011122223334333321
Q ss_pred -------------cccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC
Q 018414 157 -------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219 (356)
Q Consensus 157 -------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~ 219 (356)
+... ..+....+...+.+.|++.+.+..|++++++++++++..+++.+. +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~-v~~~--------- 150 (400)
T PRK08013 81 MEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAF-LTLK--------- 150 (400)
T ss_pred EEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEE-EEEc---------
Confidence 0000 001123345677788888887556899999999999987766543 3332
Q ss_pred CCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 220 TQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 220 ~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
++.+++||+||.|+|.+|.+
T Consensus 151 -----~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 151 -----DGSMLTARLVVGADGANSWL 170 (400)
T ss_pred -----CCCEEEeeEEEEeCCCCcHH
Confidence 13679999999999977643
No 60
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.42 E-value=8.7e-13 Score=129.78 Aligned_cols=205 Identities=19% Similarity=0.242 Sum_probs=123.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH-HHHH----HhCCCcccc-CCe
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH-IFLD----ELGIDYDEQ-DNY 163 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~-~~l~----~~G~~~~~~-~~~ 163 (356)
+||++|||+|++|..+|++|++. |.+|+++|+....||+|.+.||++++.+.+.... +.+. .+|+..... -+|
T Consensus 4 ~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~ 82 (454)
T COG1249 4 EYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDF 82 (454)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCH
Confidence 59999999999999999999999 9999999999889999999999999988876433 4444 355554432 122
Q ss_pred EEE-echHHH---HHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414 164 VVI-KHAALF---TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (356)
Q Consensus 164 ~~~-~~~~~~---~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG 239 (356)
... .+.... ...-.+.+.+..||+++.++. -..+++.+ .+.. . +..+++++++|+|||
T Consensus 83 ~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a---~f~~~~~v---~V~~-------~-----~~~~~~a~~iiIATG 144 (454)
T COG1249 83 EKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA---RFVDPHTV---EVTG-------E-----DKETITADNIIIATG 144 (454)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE---EECCCCEE---EEcC-------C-----CceEEEeCEEEEcCC
Confidence 111 111111 222234455567999998852 11123332 2210 0 247899999999999
Q ss_pred CCCCCC----CccchhhhccCcccccccccccccccccceee----eccccccCceeEeceEEEEecCCcccCCccceee
Q 018414 240 HDGPFG----ATGVKRLKSIGMIEEVPGMKALDMNSAEDAIV----RLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMM 311 (356)
Q Consensus 240 g~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l 311 (356)
+..... ..+.+.+.+.+. ..+ ...+..+++ +.+-|+..=+.-.|.++++++...++.|.+.
T Consensus 145 S~p~~~~~~~~~~~~~~~s~~~-------l~~-~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D--- 213 (454)
T COG1249 145 SRPRIPPGPGIDGARILDSSDA-------LFL-LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGED--- 213 (454)
T ss_pred CCCcCCCCCCCCCCeEEechhh-------ccc-ccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCC---
Confidence 775321 111111111110 001 122233332 2344555556677889999988777777654
Q ss_pred eehHHHHHHHHHHhCC
Q 018414 312 ISGQKAAHLALKSLGQ 327 (356)
Q Consensus 312 ~sG~~~~~l~l~~~~~ 327 (356)
+.+.+.+.+.|.+
T Consensus 214 ---~ei~~~~~~~l~~ 226 (454)
T COG1249 214 ---PEISKELTKQLEK 226 (454)
T ss_pred ---HHHHHHHHHHHHh
Confidence 4444555555533
No 61
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.41 E-value=6.6e-12 Score=122.43 Aligned_cols=137 Identities=21% Similarity=0.311 Sum_probs=87.0
Q ss_pred CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC----------Cc
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI----------DY 157 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~----------~~ 157 (356)
...+||+|||||++|+++|+.|+++ |++|+||||...+..... +.............+.|+++|+ ++
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~~~~~~~--~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGREPPRWQAD--QPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY 80 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCCcccccC--CCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence 3468999999999999999999999 999999999864321100 0000000111122233333332 11
Q ss_pred cc--------------------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414 158 DE--------------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 217 (356)
Q Consensus 158 ~~--------------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~ 217 (356)
.. ...+.+..+...+.+.|++.+. +.|++++++++|+++..+++.+. +...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~-~~gv~i~~~~~v~~i~~~~~~v~-v~~~~------ 152 (392)
T PRK08773 81 RRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALH-AAGVQLHCPARVVALEQDADRVR-LRLDD------ 152 (392)
T ss_pred cEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeEEEEEecCCeEE-EEECC------
Confidence 00 0011122334667778887776 56999999999999988776554 43321
Q ss_pred cCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 218 HDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
..++++|.||.|+|.++.
T Consensus 153 --------g~~~~a~~vV~AdG~~S~ 170 (392)
T PRK08773 153 --------GRRLEAALAIAADGAAST 170 (392)
T ss_pred --------CCEEEeCEEEEecCCCch
Confidence 357899999999998764
No 62
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.41 E-value=1.2e-12 Score=132.13 Aligned_cols=144 Identities=25% Similarity=0.375 Sum_probs=102.3
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc--------------ch---------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL--------------FS--------------- 138 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~--------------~~--------------- 138 (356)
.++||||||+|.|||.||+.+++. |++|+|+||....++.+ +..|.+ +.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~rg~t~~a~gG~~a~~~~~~~~~~ds~e~~~~dtvkg~d~l~d 83 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPKRGHTVAAQGGINAALGNTVDVEGDSPELHFYDTVKGGDGLGD 83 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhc-CCcEEEEEccccCCCchhhhcccccccccCcccccCCCHHHHHHHHHhccCCcCC
Confidence 369999999999999999999999 99999999987655322 111100 00
Q ss_pred -----hhhcc-chHHHHHHHhCCCccccCCe----------------EEEe-chHHHHHHHHHHHHcCCCcEEEcCeEEE
Q 018414 139 -----AMVVR-KPAHIFLDELGIDYDEQDNY----------------VVIK-HAALFTSTIMSKLLARPNVKLFNAVAAE 195 (356)
Q Consensus 139 -----~~~~~-~~~~~~l~~~G~~~~~~~~~----------------~~~~-~~~~~~~~l~~~~~~~~gv~i~~~~~v~ 195 (356)
.++.. ...+.+|+++|++|.+.... +... ....+...|++++.+..+++++.++.+.
T Consensus 84 qd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~ 163 (562)
T COG1053 84 QDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVL 163 (562)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 00111 13578999999998665321 1111 1356778888888866788999999999
Q ss_pred EEEEeCCe-EEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 196 DLIVKGGR-VGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 196 ~i~~~~~~-v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+++.++++ |.|+...+ .. +++...+++|.||+||||.+
T Consensus 164 ~l~~~~~~~v~Gvv~~~------~~---~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 164 DLLVDDGGGVAGVVARD------LR---TGELYVFRAKAVILATGGAG 202 (562)
T ss_pred hheecCCCcEEEEEEEE------ec---CCcEEEEecCcEEEccCCce
Confidence 99987654 88887643 12 23467889999999999988
No 63
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.40 E-value=6.8e-12 Score=122.30 Aligned_cols=132 Identities=23% Similarity=0.355 Sum_probs=94.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccCCccchhhhccchHHHHHHHhCC-Cc-c--------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-DY-D-------- 158 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~-~~-~-------- 158 (356)
.+||+|||||++|+++|+.|++. |++|+|||+.+ ..-. .+ ..........+.|+++|+ +- .
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~~~~~~~----~~---r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~ 73 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERAPRELLE----RG---RGIALSPNALRALERLGLWDRLEALGVPPLH 73 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccCcccccc----Cc---eeeeecHhHHHHHHHcCChhhhhhccCCcee
Confidence 47999999999999999999999 99999999982 1110 00 112233445566666665 20 0
Q ss_pred -----cc--------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC
Q 018414 159 -----EQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219 (356)
Q Consensus 159 -----~~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~ 219 (356)
.. ..+....+...+.+.|++.+.+..+++++++++|+.+..+++.+. +... .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~-v~l~-------~- 144 (387)
T COG0654 74 VMVVDDGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVT-VTLS-------F- 144 (387)
T ss_pred eEEEecCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceE-EEEc-------C-
Confidence 00 111223455788899999998777799999999999999988777 5543 0
Q ss_pred CCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 220 TQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 220 ~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++.+++||.||.|+|.+|.
T Consensus 145 -----dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 145 -----DGETLDADLLVGADGANSA 163 (387)
T ss_pred -----CCcEEecCEEEECCCCchH
Confidence 1348999999999997763
No 64
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.39 E-value=1.7e-12 Score=119.71 Aligned_cols=138 Identities=25% Similarity=0.294 Sum_probs=101.5
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH----HHHHHHhCCCccccC--C
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQD--N 162 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~~~~~~~--~ 162 (356)
++||.+|||||.+|+++|++++.. |.+|.|+|.....||+|.+.||.+.+.+++... .+...++|++..... +
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASH-GAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhc-CceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCc
Confidence 479999999999999999999999 999999999888999999999999998887632 344456888876543 3
Q ss_pred eEEEechH-HH---HHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414 163 YVVIKHAA-LF---TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (356)
Q Consensus 163 ~~~~~~~~-~~---~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At 238 (356)
|..+.+.+ .+ .+.+|++.+.+.+|+++.++. -..+++.+. |..++ +....|+|+++++|+
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a---~f~~~~~v~-V~~~d------------~~~~~Ytak~iLIAt 161 (478)
T KOG0405|consen 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA---RFVSPGEVE-VEVND------------GTKIVYTAKHILIAT 161 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeE---EEcCCCceE-EEecC------------CeeEEEecceEEEEe
Confidence 44433322 22 367788888888999998852 112334332 33322 124569999999999
Q ss_pred CCCCC
Q 018414 239 GHDGP 243 (356)
Q Consensus 239 Gg~~~ 243 (356)
|+...
T Consensus 162 Gg~p~ 166 (478)
T KOG0405|consen 162 GGRPI 166 (478)
T ss_pred CCccC
Confidence 97764
No 65
>PLN02546 glutathione reductase
Probab=99.39 E-value=4.8e-12 Score=128.33 Aligned_cols=131 Identities=18% Similarity=0.247 Sum_probs=87.1
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEec---------cCCCCCccccCCccchhhhccchH-HHH---HHHhCC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ---------SVSPGGGAWLGGQLFSAMVVRKPA-HIF---LDELGI 155 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk---------~~~~Gg~~~~~g~~~~~~~~~~~~-~~~---l~~~G~ 155 (356)
.+|||+|||+|++|..+|+.|++. |++|+|+|+ ...+||+|.+.||++.+.+..... .+. ...+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 369999999999999999999999 999999996 245899999999999998876532 233 344676
Q ss_pred Ccccc--CCeEEEe-chH----HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeE
Q 018414 156 DYDEQ--DNYVVIK-HAA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV 228 (356)
Q Consensus 156 ~~~~~--~~~~~~~-~~~----~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~ 228 (356)
.+... .+|.... +.. .+... ++...++.|++++.+ +++.+ +... +.+. +..
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~-~~~~l~~~gV~~i~G-~a~~v--d~~~---V~v~---------------G~~ 214 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGI-YKNILKNAGVTLIEG-RGKIV--DPHT---VDVD---------------GKL 214 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEEEe-EEEEc--cCCE---EEEC---------------CEE
Confidence 54211 1222111 111 22222 333344679999987 33333 2222 2221 256
Q ss_pred EEcCEEEEcCCCCC
Q 018414 229 MEAKVVVSSCGHDG 242 (356)
Q Consensus 229 i~Ak~VI~AtGg~~ 242 (356)
+.+|+||+|||+..
T Consensus 215 ~~~D~LVIATGs~p 228 (558)
T PLN02546 215 YTARNILIAVGGRP 228 (558)
T ss_pred EECCEEEEeCCCCC
Confidence 89999999999765
No 66
>PRK07045 putative monooxygenase; Reviewed
Probab=99.39 E-value=1.2e-11 Score=120.57 Aligned_cols=134 Identities=20% Similarity=0.304 Sum_probs=86.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC--------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-------------- 155 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~-------------- 155 (356)
.+||+|||||++|+++|+.|+++ |++|+|+||.+.+... .++.. ......+.|+++|+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~--~~~~~-----l~~~~~~~L~~lGl~~~~~~~~~~~~~~ 76 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAARNRAQ--NGADL-----LKPSGIGVVRAMGLLDDVFAAGGLRRDA 76 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCcccCC--Ccccc-----cCccHHHHHHHcCCHHHHHhcccccccc
Confidence 58999999999999999999999 9999999998754210 00000 00011111111111
Q ss_pred -------------Ccccc--CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCe-EEEEEEcceeeecccC
Q 018414 156 -------------DYDEQ--DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHD 219 (356)
Q Consensus 156 -------------~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~gv~~~~~~~~~~~~ 219 (356)
++... ..+....+...+.+.|++.+.+..|++++++++++++..+++. +..+...+
T Consensus 77 ~~~~~~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~-------- 148 (388)
T PRK07045 77 MRLYHDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSD-------- 148 (388)
T ss_pred eEEecCCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCC--------
Confidence 00000 1122223445677778888766789999999999999886543 34555432
Q ss_pred CCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 220 TQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 220 ~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
+.++++|.||.|+|..+...
T Consensus 149 ------g~~~~~~~vIgADG~~S~vR 168 (388)
T PRK07045 149 ------GERVAPTVLVGADGARSMIR 168 (388)
T ss_pred ------CCEEECCEEEECCCCChHHH
Confidence 35799999999999876433
No 67
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.39 E-value=8.7e-12 Score=127.49 Aligned_cols=44 Identities=30% Similarity=0.502 Sum_probs=38.7
Q ss_pred ccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
....++||||||+|++|++||+.++++ |.+|+||||....||.+
T Consensus 5 ~~~~~~DVvVVG~G~aGl~AA~~aa~~-G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 5 TNELTCDVLVIGSGAGGLSAAITARKL-GLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CcCCCCCEEEECcCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcc
Confidence 334579999999999999999999999 99999999998777653
No 68
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.38 E-value=5.4e-12 Score=124.94 Aligned_cols=139 Identities=27% Similarity=0.304 Sum_probs=93.6
Q ss_pred cEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCcccc-CCccc--------------------hhhh--------
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWL-GGQLF--------------------SAMV-------- 141 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~~~-~g~~~--------------------~~~~-------- 141 (356)
||||||+|.+|++||+.|+++ | .+|+||||....||.+.. ++.+. ..++
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~-G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA-GAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGIND 79 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Confidence 899999999999999999999 9 999999999877655422 22110 0000
Q ss_pred --------cc-chHHHHHHHhCCCccccC-------CeEEE-------echHHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414 142 --------VR-KPAHIFLDELGIDYDEQD-------NYVVI-------KHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198 (356)
Q Consensus 142 --------~~-~~~~~~l~~~G~~~~~~~-------~~~~~-------~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~ 198 (356)
.. ...++||. .++.+.... .++.. .....+...|.+.+. +.|++++++++|++|+
T Consensus 80 ~~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~gv~i~~~~~v~~l~ 157 (439)
T TIGR01813 80 PELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAK-KEGIDTRLNSKVEDLI 157 (439)
T ss_pred HHHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHH-HcCCEEEeCCEeeEeE
Confidence 00 12356777 454432210 01100 123567778877776 6799999999999999
Q ss_pred Ee-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 199 VK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 199 ~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.+ ++++.++.+.. . ++....+.+|.||+|+|+++.
T Consensus 158 ~~~~g~v~Gv~~~~------~----~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 158 QDDQGTVVGVVVKG------K----GKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred ECCCCcEEEEEEEe------C----CCeEEEEecceEEEecCCCCC
Confidence 86 56888887642 0 112346889999999998875
No 69
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.38 E-value=5.8e-12 Score=127.07 Aligned_cols=137 Identities=29% Similarity=0.374 Sum_probs=89.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCcccc--CCccchhhhcc------chHHHHHHHhCCCcccc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWL--GGQLFSAMVVR------KPAHIFLDELGIDYDEQ 160 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~--~g~~~~~~~~~------~~~~~~l~~~G~~~~~~ 160 (356)
+|||||||||+||+.||+.+++. |.+|+|||+.. .+|+-.++ -|.+....+.+ .....+++..++.+...
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHc-CCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 59999999999999999999999 99999999973 45532211 01111111111 11223444455544321
Q ss_pred C----CeEE----EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414 161 D----NYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 232 (356)
Q Consensus 161 ~----~~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak 232 (356)
. .... ..+...+...+.+.+.+..|++++. ..|+++..+++++.+|.+.+ +..+.|+
T Consensus 83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q-~~V~~Li~e~grV~GV~t~d--------------G~~I~Ak 147 (618)
T PRK05192 83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ-GEVEDLIVENGRVVGVVTQD--------------GLEFRAK 147 (618)
T ss_pred ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE-eEEEEEEecCCEEEEEEECC--------------CCEEECC
Confidence 1 1100 1233556667777776667899864 57999998899999998853 3679999
Q ss_pred EEEEcCCCCC
Q 018414 233 VVVSSCGHDG 242 (356)
Q Consensus 233 ~VI~AtGg~~ 242 (356)
.||+|||.+.
T Consensus 148 ~VIlATGTFL 157 (618)
T PRK05192 148 AVVLTTGTFL 157 (618)
T ss_pred EEEEeeCcch
Confidence 9999999653
No 70
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.38 E-value=1.3e-11 Score=121.17 Aligned_cols=137 Identities=18% Similarity=0.277 Sum_probs=85.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Cc---
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DY--- 157 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~--- 157 (356)
.+||+|||||++|+++|+.|++. |++|+|+||.+.+.......+. .......+.|+++|+ ++
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~g~~~-----~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 91 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPAEAAAAKGQAY-----ALSLLSARIFEGIGVWEKILPQIGKFRQI 91 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCccccCCCCcEE-----EechHHHHHHHHCChhhhhHhhcCCccEE
Confidence 58999999999999999999999 9999999998754211000000 011111222222222 11
Q ss_pred -------------ccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCC
Q 018414 158 -------------DEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDT 220 (356)
Q Consensus 158 -------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~ 220 (356)
... ..+........+.+.|++.+.+..+++++++++++++..+++.+. +...+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~-v~~~~--------- 161 (415)
T PRK07364 92 RLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAAT-VTLEI--------- 161 (415)
T ss_pred EEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeE-EEEcc---------
Confidence 000 001111222456777878776556899999999999987766543 33321
Q ss_pred CCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 221 QSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 221 ~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
.++..+++||.||.|+|.++.+
T Consensus 162 --~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 162 --EGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred --CCcceEEeeeEEEEeCCCCchh
Confidence 0123579999999999987754
No 71
>PRK09126 hypothetical protein; Provisional
Probab=99.38 E-value=1.5e-11 Score=119.73 Aligned_cols=135 Identities=20% Similarity=0.292 Sum_probs=87.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc--cccCCccchhhhccchHHHHHHHhCCC-----------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG--AWLGGQLFSAMVVRKPAHIFLDELGID----------- 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~--~~~~g~~~~~~~~~~~~~~~l~~~G~~----------- 156 (356)
++||+|||||++|+++|+.|+++ |++|+|+||...+.-. ...+. .........+.|+++|+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~g~----~i~l~~~~~~~L~~lGl~~~~~~~~~~~~ 77 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPLAALADPAFDGR----EIALTHASREILQRLGAWDRIPEDEISPL 77 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCcccccCCCCchh----HHHhhHHHHHHHHHCCChhhhccccCCcc
Confidence 58999999999999999999999 9999999998754210 00010 011112223344444431
Q ss_pred ---------------ccc----cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414 157 ---------------YDE----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 217 (356)
Q Consensus 157 ---------------~~~----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~ 217 (356)
+.. ...+....+...+.+.|++.+.+..|++++++++++++..+++.+. +...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~-v~~~~------ 150 (392)
T PRK09126 78 RDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQ-VTLAN------ 150 (392)
T ss_pred ceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEE-EEEcC------
Confidence 000 0001111233456677777776667999999999999987766543 44331
Q ss_pred cCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 218 HDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+.+++||.||.|+|..+..
T Consensus 151 --------g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 151 --------GRRLTARLLVAADSRFSAT 169 (392)
T ss_pred --------CCEEEeCEEEEeCCCCchh
Confidence 3579999999999977643
No 72
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=99.38 E-value=3.5e-12 Score=119.09 Aligned_cols=134 Identities=20% Similarity=0.286 Sum_probs=89.5
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH------HHHHHhCCCcccc-C
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH------IFLDELGIDYDEQ-D 161 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~------~~l~~~G~~~~~~-~ 161 (356)
.+|||+|||+||+|..||+.+++. |++.+.+||+...||+|.+.||++++.+.+.... +.+++.|+..... -
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~ 116 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSL 116 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccceec
Confidence 369999999999999999999999 9999999999999999999999999887765321 2445566655321 0
Q ss_pred CeEE-Eech----HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414 162 NYVV-IKHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236 (356)
Q Consensus 162 ~~~~-~~~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~ 236 (356)
+.+. ..+. ..+... ++.+.++.+|+++.++- -..+..+|. +.. .+|+...+.+|++|+
T Consensus 117 dl~~~~~~k~~~vk~Lt~g-i~~lfkknkV~~~kG~g---sf~~p~~V~-v~k------------~dg~~~ii~aKnIii 179 (506)
T KOG1335|consen 117 DLQAMMKAKDNAVKQLTGG-IENLFKKNKVTYVKGFG---SFLDPNKVS-VKK------------IDGEDQIIKAKNIII 179 (506)
T ss_pred CHHHHHHHHHHHHHHHhhH-HHHHhhhcCeEEEeeeE---eecCCceEE-Eec------------cCCCceEEeeeeEEE
Confidence 1100 1111 222233 33334467888877652 112233332 111 134568999999999
Q ss_pred cCCC
Q 018414 237 SCGH 240 (356)
Q Consensus 237 AtGg 240 (356)
|||.
T Consensus 180 ATGS 183 (506)
T KOG1335|consen 180 ATGS 183 (506)
T ss_pred EeCC
Confidence 9995
No 73
>PTZ00058 glutathione reductase; Provisional
Probab=99.38 E-value=3.3e-12 Score=129.46 Aligned_cols=103 Identities=20% Similarity=0.316 Sum_probs=71.0
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH----HHHHHHhCCCccccCCeE
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQDNYV 164 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~~~~~~~~~~ 164 (356)
.+|||+|||+|++|+.||+.|++. |++|+||||. .+||+|.+.||++.+.+..... .+....+|+......+|.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~ 124 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLP 124 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHH
Confidence 369999999999999999999999 9999999997 6999999999999988876532 223445666432111221
Q ss_pred E-EechHHHHHH---HHHHHHcCCCcEEEcCeE
Q 018414 165 V-IKHAALFTST---IMSKLLARPNVKLFNAVA 193 (356)
Q Consensus 165 ~-~~~~~~~~~~---l~~~~~~~~gv~i~~~~~ 193 (356)
. ..+...+... .++...++.||+++.++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a 157 (561)
T PTZ00058 125 LLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKG 157 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE
Confidence 1 1122222222 233334467999998863
No 74
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.37 E-value=1.2e-11 Score=126.63 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc-CEEEEcCCCCCC
Q 018414 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP 243 (356)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A-k~VI~AtGg~~~ 243 (356)
+...|.+.+. +.|++++++++|++|+.++++|.+|.+.. . +....++| |.||+|+|+++.
T Consensus 219 l~~~L~~~a~-~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~-------~----~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 219 LVARLLKSAE-DLGVRIWESAPARELLREDGRVAGAVVET-------P----GGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHH-hCCCEEEcCCEEEEEEEeCCEEEEEEEEE-------C----CcEEEEEeCCEEEEcCCCccc
Confidence 4456666665 67999999999999998888999987642 0 12356889 999999999873
No 75
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.36 E-value=4.7e-13 Score=132.08 Aligned_cols=135 Identities=28% Similarity=0.426 Sum_probs=37.8
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhh------hccchHHHHHHHhCC---C-ccccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM------VVRKPAHIFLDELGI---D-YDEQD 161 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~------~~~~~~~~~l~~~G~---~-~~~~~ 161 (356)
||||||||++|++||+.+++. |++|+|||+...+||....++...... ....-..++++++.- . .....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~-G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~ 79 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA-GAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRY 79 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST------------
T ss_pred CEEEECccHHHHHHHHHHHHC-CCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccccc
Confidence 899999999999999999999 999999999999988665444322111 011111222222211 0 11111
Q ss_pred CeE--EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414 162 NYV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (356)
Q Consensus 162 ~~~--~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG 239 (356)
.+. ...+...+ ..+++.+.++.|+++++++.+.++..+++++.+|.+.+ . . ...+++||.||+|||
T Consensus 80 ~~~~~~~~~~~~~-~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~-------~---~-g~~~i~A~~~IDaTG 147 (428)
T PF12831_consen 80 GWVSNVPFDPEVF-KAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVET-------K---S-GRKEIRAKVFIDATG 147 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccccccc-------c---c-ccccccccccccccc
Confidence 110 11122222 33334444578999999999999999999999998853 1 1 157899999999999
No 76
>PRK08244 hypothetical protein; Provisional
Probab=99.36 E-value=2e-11 Score=122.71 Aligned_cols=133 Identities=20% Similarity=0.258 Sum_probs=84.6
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC--------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI-------------- 155 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~-------------- 155 (356)
++||+||||||+|+++|+.|++. |++|+||||.+.+.... .+ ........+.|+++|+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~~~~~~--ra-----~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~ 73 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKETVPYS--KA-----LTLHPRTLEILDMRGLLERFLEKGRKLPSG 73 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCc--ce-----eEecHHHHHHHHhcCcHHHHHhhcccccce
Confidence 48999999999999999999999 99999999986542110 00 0011111222222222
Q ss_pred ---------Cccc---cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCC
Q 018414 156 ---------DYDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC 223 (356)
Q Consensus 156 ---------~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~ 223 (356)
.+.. ...+....+...+.+.|.+.+. +.|++++++++++++..+++.+. +...+ . +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~~-------~---~ 141 (493)
T PRK08244 74 HFAGLDTRLDFSALDTSSNYTLFLPQAETEKVLEEHAR-SLGVEIFRGAEVLAVRQDGDGVE-VVVRG-------P---D 141 (493)
T ss_pred EEecccccCCcccCCCCCCcEEEecHHHHHHHHHHHHH-HcCCeEEeCCEEEEEEEcCCeEE-EEEEe-------C---C
Confidence 1111 0122233445566666666665 56999999999999988777654 22221 0 0
Q ss_pred CCCeEEEcCEEEEcCCCCCC
Q 018414 224 MDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 224 g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+ ..+++||+||.|+|..+.
T Consensus 142 g-~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 142 G-LRTLTSSYVVGADGAGSI 160 (493)
T ss_pred c-cEEEEeCEEEECCCCChH
Confidence 1 257999999999997763
No 77
>PRK06184 hypothetical protein; Provisional
Probab=99.35 E-value=1.9e-11 Score=123.16 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=84.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Cccc-
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE- 159 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~~- 159 (356)
++||+|||||++|+++|+.|+++ |++|+||||.+.+...... ........+.|+++|+ .+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~~~~~~ra-------~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~ 74 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPEPFPGSRG-------KGIQPRTQEVFDDLGVLDRVVAAGGLYPPM 74 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCcCccc-------eeecHHHHHHHHHcCcHHHHHhcCccccce
Confidence 58999999999999999999999 9999999998654321110 0011122233333332 1100
Q ss_pred -----cC-----------------C--eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeee
Q 018414 160 -----QD-----------------N--YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS 215 (356)
Q Consensus 160 -----~~-----------------~--~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~ 215 (356)
.. . +....+...+.+.|.+.+. +.|++++++++++++..+++.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~i~~~~~~v~v~~~~~---- 149 (502)
T PRK06184 75 RIYRDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLA-ELGHRVEFGCELVGFEQDADGVTARVAGP---- 149 (502)
T ss_pred eEEeCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHH-HCCCEEEeCcEEEEEEEcCCcEEEEEEeC----
Confidence 00 0 0112233445566777765 55999999999999988777654332210
Q ss_pred cccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 216 MNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 216 ~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.+..+++||+||.|+|.++.
T Consensus 150 --------~~~~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 150 --------AGEETVRARYLVGADGGRSF 169 (502)
T ss_pred --------CCeEEEEeCEEEECCCCchH
Confidence 12467999999999997764
No 78
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.35 E-value=2.2e-11 Score=118.07 Aligned_cols=134 Identities=14% Similarity=0.267 Sum_probs=88.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc---
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD--- 158 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~--- 158 (356)
+||+|||||++|+++|+.|++. |++|+|+|+.+.........+ ..........+.|+++|+ ++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~~~~~~~~~~~---r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKSVKSPEFFKDI---RTTALTPHSKNFLFSIDIWEELEKFVAEMQDIY 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCCCCCCccCcCc---eEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEE
Confidence 7999999999999999999999 999999998743211100000 001111222333333332 110
Q ss_pred ---cc------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCC
Q 018414 159 ---EQ------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSC 223 (356)
Q Consensus 159 ---~~------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~ 223 (356)
.. ..+.+..+...+.+.|++++.+..+++++++++++++..+++.+. +...
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~------------- 143 (374)
T PRK06617 78 VVDNKASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSI-IKFD------------- 143 (374)
T ss_pred EEECCCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEE-EEEc-------------
Confidence 00 112234566888899999987666799999999999988776554 3332
Q ss_pred CCCeEEEcCEEEEcCCCCCCC
Q 018414 224 MDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 224 g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+ .+++||.||.|+|.+|..
T Consensus 144 -~-~~~~adlvIgADG~~S~v 162 (374)
T PRK06617 144 -D-KQIKCNLLIICDGANSKV 162 (374)
T ss_pred -C-CEEeeCEEEEeCCCCchh
Confidence 1 379999999999987754
No 79
>PRK12839 hypothetical protein; Provisional
Probab=99.35 E-value=1.4e-11 Score=125.49 Aligned_cols=41 Identities=34% Similarity=0.581 Sum_probs=37.3
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
.++||+|||+|.+|+++|+.|++. |.+|+||||...+||.+
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~-g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYG-GAKVLVVEKASTCGGAT 47 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCccc
Confidence 369999999999999999999999 99999999998777654
No 80
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.35 E-value=2.4e-11 Score=118.16 Aligned_cols=133 Identities=25% Similarity=0.388 Sum_probs=86.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC--ccccCCccchhhhccchHHHHHHHhCCCcc---------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--GAWLGGQLFSAMVVRKPAHIFLDELGIDYD--------- 158 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg--~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~--------- 158 (356)
.+||+|||||++|+++|+.|++. |++|+|+||...+.. ..|.. ..........+.|+++|+.-.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~~~----r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~ 79 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAPPRPADDAWDS----RVYAISPSSQAFLERLGVWQALDAARLAPV 79 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCccccCCCCCC----ceEeecHHHHHHHHHcCchhhhhhhcCCcc
Confidence 58999999999999999999999 999999999876432 11110 111112223334444333100
Q ss_pred -------cc-------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414 159 -------EQ-------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 159 -------~~-------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~ 218 (356)
.. +......+...+.+.|.+.+.+..+++++ +++++++..+++.+. +.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~-v~~~~------- 150 (388)
T PRK07608 80 YDMRVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAAT-LTLAD------- 150 (388)
T ss_pred eEEEEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEE-EEECC-------
Confidence 00 00112334567888888888744349999 889999987766543 44431
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 219 DTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 219 ~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+.+++||.||.|+|.++.
T Consensus 151 -------g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 151 -------GQVLRADLVVGADGAHSW 168 (388)
T ss_pred -------CCEEEeeEEEEeCCCCch
Confidence 357999999999997764
No 81
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.35 E-value=5.5e-12 Score=125.85 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=86.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH-H-----HHHHhCCCccccCCe
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH-I-----FLDELGIDYDEQDNY 163 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~-~-----~l~~~G~~~~~~~~~ 163 (356)
+|||+|||+||+|+.||+.|++. |++|+|+|+...+||.|.+.||++.+.+...... + .+.++|+......+|
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~ 81 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCH
Confidence 59999999999999999999999 9999999987789999999999999887664321 1 233456543211111
Q ss_pred EE-EechHHHHH---HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414 164 VV-IKHAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (356)
Q Consensus 164 ~~-~~~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG 239 (356)
.. ..+...... .-++...++.+++++.+.. .+. +++++. +...+ ++..++++|+||+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a--~~~-~~~~v~-v~~~~------------g~~~~~~~d~lVIATG 145 (466)
T PRK06115 82 AQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG--RLD-GVGKVV-VKAED------------GSETQLEAKDIVIATG 145 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE--EEc-cCCEEE-EEcCC------------CceEEEEeCEEEEeCC
Confidence 10 001111111 1123334456899888752 222 233332 22211 1235799999999999
Q ss_pred CCC
Q 018414 240 HDG 242 (356)
Q Consensus 240 g~~ 242 (356)
+..
T Consensus 146 s~p 148 (466)
T PRK06115 146 SEP 148 (466)
T ss_pred CCC
Confidence 764
No 82
>PRK06126 hypothetical protein; Provisional
Probab=99.35 E-value=2.3e-11 Score=123.72 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=86.4
Q ss_pred cCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccch---hhhccchHHHHHHHhCCCccc----
Q 018414 87 TYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS---AMVVRKPAHIFLDELGIDYDE---- 159 (356)
Q Consensus 87 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~---~~~~~~~~~~~l~~~G~~~~~---- 159 (356)
.+.++||+|||||++|+++|+.|+++ |++|+|+||...+..... ...+.. ..+..-...+.+.+.+.+...
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~~~~~~~r-a~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~ 81 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKDGTAFNPK-ANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDI 81 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCCCCCCc-cccCCHHHHHHHHhcChHHHHHhhcCCccccCCc
Confidence 34469999999999999999999999 999999999864321100 000000 000000111222222221100
Q ss_pred ------cC-------------C---------------eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEE
Q 018414 160 ------QD-------------N---------------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG 205 (356)
Q Consensus 160 ------~~-------------~---------------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~ 205 (356)
.+ . .........+...|++.+.+..+++++++++++++..+++.+.
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~ 161 (545)
T PRK06126 82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVT 161 (545)
T ss_pred eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEE
Confidence 00 0 0011222445567777776567899999999999998877665
Q ss_pred EEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 206 GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 206 gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
....+ .. +++..++++|+||.|+|.++.
T Consensus 162 v~~~~-------~~---~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 162 ATVED-------LD---GGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EEEEE-------CC---CCcEEEEEEEEEEecCCcchH
Confidence 33221 11 123468999999999998774
No 83
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.34 E-value=5.3e-12 Score=126.13 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=88.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH----HHHHHHhCCCcccc-CCeE
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQ-DNYV 164 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~~~~~~-~~~~ 164 (356)
+|||+|||||++|+.+|..|++. |++|+|+|+.+.+||.|++.||++.+.+..... .+.+..+|+.+... .+|.
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDID 82 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHH
Confidence 59999999999999999999999 999999999878999999999999887665422 23445567654321 1111
Q ss_pred EE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414 165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg 240 (356)
.+ .+.....+.+ ++.+.++.||+++.++ +.- .+.+.+ .|...+ ++..++++|+||+|||+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~-a~~--~~~~~v-~v~~~~------------g~~~~~~~d~lViATGs 146 (471)
T PRK06467 83 KMRARKEKVVKQLTGGLAGMAKGRKVTVVNGL-GKF--TGGNTL-EVTGED------------GKTTVIEFDNAIIAAGS 146 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEE--ccCCEE-EEecCC------------CceEEEEcCEEEEeCCC
Confidence 11 1111111111 2233446799999874 222 233332 222211 12357999999999997
Q ss_pred CC
Q 018414 241 DG 242 (356)
Q Consensus 241 ~~ 242 (356)
..
T Consensus 147 ~p 148 (471)
T PRK06467 147 RP 148 (471)
T ss_pred CC
Confidence 64
No 84
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.34 E-value=2.7e-11 Score=117.63 Aligned_cols=139 Identities=23% Similarity=0.319 Sum_probs=91.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc--cc-----CCccch------hhhccc--hHHHHHHHh
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA--WL-----GGQLFS------AMVVRK--PAHIFLDEL 153 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~--~~-----~g~~~~------~~~~~~--~~~~~l~~~ 153 (356)
+|||+|||||+.|+++|++|++. |.++|+||||...++... -+ .|..+. +++... ...++++++
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~ 82 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQL 82 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHh
Confidence 59999999999999999999997 239999999998765321 11 111111 111110 113445555
Q ss_pred CCCccccCCeEE------------------------------------------------------EechHHHHHHHHHH
Q 018414 154 GIDYDEQDNYVV------------------------------------------------------IKHAALFTSTIMSK 179 (356)
Q Consensus 154 G~~~~~~~~~~~------------------------------------------------------~~~~~~~~~~l~~~ 179 (356)
+++|...+...+ ..+...+...|.+.
T Consensus 83 ~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e~ 162 (429)
T COG0579 83 GIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEE 162 (429)
T ss_pred CCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHHH
Confidence 555443321111 12345677888888
Q ss_pred HHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 180 LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 180 ~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+. +.|++++++++|++|...++.++.+.+.. |+.. ++||.||+|.|+++
T Consensus 163 a~-~~g~~i~ln~eV~~i~~~~dg~~~~~~~~------------g~~~-~~ak~Vin~AGl~A 211 (429)
T COG0579 163 AQ-ANGVELRLNTEVTGIEKQSDGVFVLNTSN------------GEET-LEAKFVINAAGLYA 211 (429)
T ss_pred HH-HcCCEEEecCeeeEEEEeCCceEEEEecC------------CcEE-EEeeEEEECCchhH
Confidence 87 45999999999999999876555555532 1222 99999999999765
No 85
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.34 E-value=1.7e-11 Score=117.72 Aligned_cols=133 Identities=27% Similarity=0.374 Sum_probs=86.5
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEE-eccCCCCCccccCC--ccchhhhcc------chHHHHHHHhCCCcccc--
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAII-EQSVSPGGGAWLGG--QLFSAMVVR------KPAHIFLDELGIDYDEQ-- 160 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~ll-Ek~~~~Gg~~~~~g--~~~~~~~~~------~~~~~~l~~~G~~~~~~-- 160 (356)
||+|||||.||+.||+.+|+. |.+|+|+ ++.+.++.-.++.. ......+.+ .......+..++.+...
T Consensus 1 DViVVGgG~AG~eAA~aaAr~-G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~ 79 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM-GAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNR 79 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEEST
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhcccc
Confidence 899999999999999999999 9999999 45444543222211 111111111 12223444455544322
Q ss_pred ------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEE
Q 018414 161 ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234 (356)
Q Consensus 161 ------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~V 234 (356)
.......+...|...+.+.+.+.+|++++.. +|++|..++++|.||.+.+ +..+.+|.|
T Consensus 80 skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~-~V~~l~~e~~~v~GV~~~~--------------g~~~~a~~v 144 (392)
T PF01134_consen 80 SKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQG-EVTDLIVENGKVKGVVTKD--------------GEEIEADAV 144 (392)
T ss_dssp TS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES--EEEEEECTTEEEEEEETT--------------SEEEEECEE
T ss_pred cCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEc-ccceEEecCCeEEEEEeCC--------------CCEEecCEE
Confidence 1122244567777888888877789999754 8999999999999999863 478999999
Q ss_pred EEcCCC
Q 018414 235 VSSCGH 240 (356)
Q Consensus 235 I~AtGg 240 (356)
|+|||.
T Consensus 145 VlaTGt 150 (392)
T PF01134_consen 145 VLATGT 150 (392)
T ss_dssp EE-TTT
T ss_pred EEeccc
Confidence 999997
No 86
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.34 E-value=2.2e-11 Score=124.57 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc-CEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA-KVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A-k~VI~AtGg~~~ 243 (356)
.+...|++.+. +.|+++++++.+++|+.++++|.+|.+.. +++..++.| +.||+|||+++.
T Consensus 222 ~l~~aL~~~~~-~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~-----------~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 222 ALIGRLLYSLR-ARGVRILTQTDVESLETDHGRVIGATVVQ-----------GGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEeeCCEEEEEEEec-----------CCeEEEEEccceEEECCCCccc
Confidence 35566777765 67999999999999998889999987742 112356886 789999999885
No 87
>PRK07190 hypothetical protein; Provisional
Probab=99.33 E-value=2.6e-11 Score=121.54 Aligned_cols=129 Identities=16% Similarity=0.248 Sum_probs=81.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Cc---
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DY--- 157 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~--- 157 (356)
.+||+|||||++|+++|+.|+++ |++|+||||...+....... .......+.|+.+|+ ++
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~~~~~gra~-------~l~~~tle~L~~lGl~~~l~~~~~~~~~~ 76 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDGPLEVGRAD-------ALNARTLQLLELVDLFDELYPLGKPCNTS 76 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCcccccccce-------EeCHHHHHHHHhcChHHHHHhhCccceeE
Confidence 58999999999999999999999 99999999987653211100 001111111111111 10
Q ss_pred ----------------ccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414 158 ----------------DEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 217 (356)
Q Consensus 158 ----------------~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~ 217 (356)
+.. ..+........+...|.+++. +.|++++++++|+++..+++.+... +.
T Consensus 77 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~-~~Gv~v~~~~~v~~l~~~~~~v~v~-~~------- 147 (487)
T PRK07190 77 SVWANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLK-EAGAAVKRNTSVVNIELNQAGCLTT-LS------- 147 (487)
T ss_pred EEecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeeEEE-EC-------
Confidence 000 001122233445555666665 5699999999999999887765432 22
Q ss_pred cCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 218 HDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 218 ~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++.+++||+||.|+|+.+
T Consensus 148 -------~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 148 -------NGERIQSRYVIGADGSRS 165 (487)
T ss_pred -------CCcEEEeCEEEECCCCCH
Confidence 125799999999999765
No 88
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.33 E-value=3.2e-11 Score=122.54 Aligned_cols=142 Identities=20% Similarity=0.240 Sum_probs=90.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccch----------------------------hh-
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFS----------------------------AM- 140 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~----------------------------~~- 140 (356)
+|||+|||||+.|+++|+.|+++ |++|+||||+....|+++....+.. ..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~r-G~~V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~~~ 84 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALR-GLRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 84 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchHhh
Confidence 59999999999999999999999 9999999998654443322111000 00
Q ss_pred -------h-ccchH-------HHHHHHhCCCcccc-------------CC----eE---EEechHHHHHHHHHHHHcCCC
Q 018414 141 -------V-VRKPA-------HIFLDELGIDYDEQ-------------DN----YV---VIKHAALFTSTIMSKLLARPN 185 (356)
Q Consensus 141 -------~-~~~~~-------~~~l~~~G~~~~~~-------------~~----~~---~~~~~~~~~~~l~~~~~~~~g 185 (356)
+ ..... .+++...|++.... .. +. ...+...+...+...+. +.|
T Consensus 85 ~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~vdp~rl~~al~~~A~-~~G 163 (546)
T PRK11101 85 EPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAK-EHG 163 (546)
T ss_pred cccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEECHHHHHHHHHHHHH-hCC
Confidence 0 00000 11223344432110 00 00 01234556666666665 679
Q ss_pred cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 186 VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 186 v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++++++++|+++..+++++.+|.+.+ .. +++..+|+|+.||+|+|.++
T Consensus 164 a~i~~~t~V~~i~~~~~~v~gv~v~d------~~---~g~~~~i~A~~VVnAaG~wa 211 (546)
T PRK11101 164 AQILTYHEVTGLIREGDTVCGVRVRD------HL---TGETQEIHAPVVVNAAGIWG 211 (546)
T ss_pred CEEEeccEEEEEEEcCCeEEEEEEEE------cC---CCcEEEEECCEEEECCChhH
Confidence 99999999999998888888887642 11 11236799999999999875
No 89
>PRK14694 putative mercuric reductase; Provisional
Probab=99.33 E-value=8.8e-12 Score=124.47 Aligned_cols=139 Identities=14% Similarity=0.173 Sum_probs=86.9
Q ss_pred ccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH-HHHHH----hCCCcc-c
Q 018414 86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH-IFLDE----LGIDYD-E 159 (356)
Q Consensus 86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~-~~l~~----~G~~~~-~ 159 (356)
+...+|||+|||||++|+.+|+.|++. |++|+|+|++ .+||+|++.||++.+.+.+.... +.... +|+... .
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~ 79 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATER-GARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP 79 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence 445679999999999999999999999 9999999997 68999999999998877654332 22222 233211 1
Q ss_pred cCCeEE-EechHHHHHHH----HHH-HHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCE
Q 018414 160 QDNYVV-IKHAALFTSTI----MSK-LLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV 233 (356)
Q Consensus 160 ~~~~~~-~~~~~~~~~~l----~~~-~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~ 233 (356)
..+|.. ..+.......+ ++. +.+..+++++.+ +++.+. .+. ..|.+.+ ++..++++|+
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id--~~~-~~V~~~~------------g~~~~~~~d~ 143 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVD--ERT-LTVTLND------------GGEQTVHFDR 143 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEec--CCE-EEEEecC------------CCeEEEECCE
Confidence 111110 01111222221 112 222348888887 465552 332 2233321 1235799999
Q ss_pred EEEcCCCCC
Q 018414 234 VVSSCGHDG 242 (356)
Q Consensus 234 VI~AtGg~~ 242 (356)
||+|||...
T Consensus 144 lViATGs~p 152 (468)
T PRK14694 144 AFIGTGARP 152 (468)
T ss_pred EEEeCCCCC
Confidence 999999764
No 90
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.33 E-value=3.4e-11 Score=117.23 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=86.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC--C-CccccCCccchhhhccchHHHHHHHhCCC----------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP--G-GGAWLGGQLFSAMVVRKPAHIFLDELGID---------- 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~--G-g~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------- 156 (356)
.+||+|||||++|+++|+.|++. |++|+|+|+.... . .+.+ + ...........+.|+++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~~~~~~~~~~~--~--~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~ 77 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGEPKAFEPSQPM--D--IRVSAISQTSVDLLESLGAWSSIVAMRVCP 77 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCCcccCCCCCCC--C--ccEEEecHHHHHHHHHCCCchhhhHhhCCc
Confidence 38999999999999999999999 9999999987421 0 0000 0 00011122233444444421
Q ss_pred cc------c-------------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414 157 YD------E-------------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 217 (356)
Q Consensus 157 ~~------~-------------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~ 217 (356)
+. . ...+.+......+...|++++.+..|++++++++++++..+++.+. +...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~-v~~~~------ 150 (384)
T PRK08849 78 YKRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNR-VTLES------ 150 (384)
T ss_pred cceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEE-EEECC------
Confidence 00 0 0011111222456667777776667899999999999988776553 44431
Q ss_pred cCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 218 HDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+.++++|.||.|+|..+..
T Consensus 151 --------g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 151 --------GAEIEAKWVIGADGANSQV 169 (384)
T ss_pred --------CCEEEeeEEEEecCCCchh
Confidence 3689999999999987753
No 91
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.33 E-value=4.3e-11 Score=116.65 Aligned_cols=141 Identities=18% Similarity=0.302 Sum_probs=84.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCCccchhhhccchH-HHHH----HHh------CCC--
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVRKPA-HIFL----DEL------GID-- 156 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~-~~~Gg~~~~~g~~~~~~~~~~~~-~~~l----~~~------G~~-- 156 (356)
|||+||||||+|+++|+.|++. |++|+|+|+. ..+. ..++.+....+..-.. .+++ ... +..
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~~~~~~---~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~ 76 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERALSNIK---PCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIK 76 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCcC---cCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceee
Confidence 7999999999999999999999 9999999997 3221 1122221111110000 0111 000 000
Q ss_pred --ccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEE
Q 018414 157 --YDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234 (356)
Q Consensus 157 --~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~V 234 (356)
+.....|....+...|.+.|.+++. +.|++++.. .++++..+++.+. +...++ ..+..++..+++||.|
T Consensus 77 ~~~~~~~~~~~~~~r~~fd~~L~~~a~-~~G~~v~~~-~v~~v~~~~~~~~-v~~~~~------~~~~~~~~~~i~a~~V 147 (388)
T TIGR02023 77 VTIPSEDGYVGMVRREVFDSYLRERAQ-KAGAELIHG-LFLKLERDRDGVT-LTYRTP------KKGAGGEKGSVEADVV 147 (388)
T ss_pred eccCCCCCceEeeeHHHHHHHHHHHHH-hCCCEEEee-EEEEEEEcCCeEE-EEEEec------cccCCCcceEEEeCEE
Confidence 0111123333566788888888876 569999766 6889887766543 333210 0000112467999999
Q ss_pred EEcCCCCCCC
Q 018414 235 VSSCGHDGPF 244 (356)
Q Consensus 235 I~AtGg~~~~ 244 (356)
|.|+|..+.+
T Consensus 148 I~AdG~~S~v 157 (388)
T TIGR02023 148 IGADGANSPV 157 (388)
T ss_pred EECCCCCcHH
Confidence 9999987744
No 92
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.33 E-value=5.8e-12 Score=118.66 Aligned_cols=158 Identities=25% Similarity=0.373 Sum_probs=107.6
Q ss_pred CcccEEEECCCHHHHHHHHHhhcC-----CCCeEEEEeccCCCCCccccCCccch----hhhcc-------------chH
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGAWLGGQLFS----AMVVR-------------KPA 146 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~-----~G~~V~llEk~~~~Gg~~~~~g~~~~----~~~~~-------------~~~ 146 (356)
.++||+|||||||||++|++|.+. ..++|+|+||...+||....+..+-. .++.+ ...
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~ 154 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDK 154 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCcccccccccc
Confidence 369999999999999999998752 16799999999999987765543211 11100 000
Q ss_pred HHHHHH-hCC------CccccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeeccc
Q 018414 147 HIFLDE-LGI------DYDEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 147 ~~~l~~-~G~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~ 218 (356)
..+|.. +.+ +++..++|. ..-..+.+.|-+++. +.|++|+.+..+.+++.+ ++.|.|+.+++..+..++
T Consensus 155 ~~fLt~~~~i~vPv~~pm~NhGNYv--v~L~~~v~wLg~kAE-e~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G 231 (621)
T KOG2415|consen 155 FKFLTGKGRISVPVPSPMDNHGNYV--VSLGQLVRWLGEKAE-ELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDG 231 (621)
T ss_pred eeeeccCceeecCCCcccccCCcEE--EEHHHHHHHHHHHHH-hhCceeccccchhheeEcCCCcEeeEeeccccccCCC
Confidence 111111 111 111223333 234778888888876 789999999999999886 679999999987666665
Q ss_pred CCCCCC-CCeEEEcCEEEEcCCCCCCCCCccc
Q 018414 219 DTQSCM-DPNVMEAKVVVSSCGHDGPFGATGV 249 (356)
Q Consensus 219 ~~~~~g-~~~~i~Ak~VI~AtGg~~~~~~~~~ 249 (356)
..+.+. .+..++|+..|.|.|.+|++..+-+
T Consensus 232 ~pKd~FerGme~hak~TifAEGc~G~Lskqi~ 263 (621)
T KOG2415|consen 232 APKDTFERGMEFHAKVTIFAEGCHGSLSKQII 263 (621)
T ss_pred CccccccccceecceeEEEeccccchhHHHHH
Confidence 544322 2457999999999999997665433
No 93
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.32 E-value=4.3e-11 Score=116.58 Aligned_cols=136 Identities=18% Similarity=0.285 Sum_probs=86.2
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCcc--chhhhccchHHHHHHHhCCC----------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQL--FSAMVVRKPAHIFLDELGID---------- 156 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~--~~~~~~~~~~~~~l~~~G~~---------- 156 (356)
.+|||+|||||++|+++|+.|++. |++|+|+|+..... +..+.. ...........+.|+++|+.
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~~~---~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAPAP---FDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHP 79 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCCCCc---ccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcc
Confidence 359999999999999999999999 99999999975321 000000 00000111122233333320
Q ss_pred ---------------cccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414 157 ---------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 217 (356)
Q Consensus 157 ---------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~ 217 (356)
++.. ..+.+..+...+.+.|++.+.+..|++++++++++++..+++.+ .+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~v~~~~------ 152 (391)
T PRK08020 80 YRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGW-ELTLAD------ 152 (391)
T ss_pred cceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeE-EEEECC------
Confidence 0000 11112344567778888887755699999999999998776653 233321
Q ss_pred cCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 218 HDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
..+++||.||.|+|..+.
T Consensus 153 --------g~~~~a~~vI~AdG~~S~ 170 (391)
T PRK08020 153 --------GEEIQAKLVIGADGANSQ 170 (391)
T ss_pred --------CCEEEeCEEEEeCCCCch
Confidence 357999999999998774
No 94
>PLN02985 squalene monooxygenase
Probab=99.32 E-value=5e-11 Score=120.08 Aligned_cols=138 Identities=25% Similarity=0.375 Sum_probs=88.7
Q ss_pred CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC------------
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI------------ 155 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~------------ 155 (356)
...+||+|||||++|+++|+.|+++ |.+|+|+||........+ | ........+.|+++|+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~~~~~~~~--g-----~~L~p~g~~~L~~LGl~d~l~~~~~~~~ 112 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDLREPERMM--G-----EFMQPGGRFMLSKLGLEDCLEGIDAQKA 112 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcCCCCcccc--c-----cccCchHHHHHHHcCCcchhhhccCccc
Confidence 3468999999999999999999999 999999999753211111 0 0111112222222222
Q ss_pred --------------Ccccc-C--Ce---EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeee
Q 018414 156 --------------DYDEQ-D--NY---VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS 215 (356)
Q Consensus 156 --------------~~~~~-~--~~---~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~ 215 (356)
+|... . .+ ....+...+.+.|.+++.+..|++++.+ +++++..+++.+.+|....
T Consensus 113 ~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~---- 187 (514)
T PLN02985 113 TGMAVYKDGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKN---- 187 (514)
T ss_pred ccEEEEECCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEc----
Confidence 11100 0 00 1233456788888888876678999876 6888877777777777631
Q ss_pred cccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 216 MNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 216 ~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
. +|+..+++||.||.|+|.+|.+
T Consensus 188 --~----dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 188 --S----AGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred --C----CCCEEEEECCEEEECCCCchHH
Confidence 0 1234568899999999987743
No 95
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.32 E-value=4.6e-11 Score=117.02 Aligned_cols=138 Identities=15% Similarity=0.214 Sum_probs=86.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC-ccchhhhccchHHHHHHHhCCC------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-QLFSAMVVRKPAHIFLDELGID------------ 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g-~~~~~~~~~~~~~~~l~~~G~~------------ 156 (356)
+|||+|||||++|+++|+.|+++ |++|+|+|+.+.......... .............+.|+++|+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 48999999999999999999999 999999999863211000000 0000011122233344433321
Q ss_pred --------------cccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414 157 --------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 157 --------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~ 218 (356)
|... ..+....+...+.+.|++.+. +.|++++++++++++..+++.+. +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~-------- 150 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLH-DSDIGLLANARLEQMRRSGDDWL-LTLA-------- 150 (405)
T ss_pred eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHh-cCCCEEEcCCEEEEEEEcCCeEE-EEEC--------
Confidence 0000 001122344567777777776 56999999999999987776543 3332
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 219 DTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
++.+++||.||.|+|.++.+
T Consensus 151 ------~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 151 ------DGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred ------CCCEEEeCEEEEecCCCchh
Confidence 13579999999999987743
No 96
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.32 E-value=1e-11 Score=123.41 Aligned_cols=130 Identities=18% Similarity=0.218 Sum_probs=85.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-H---HHHHHhCCCcccc--CCe
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-H---IFLDELGIDYDEQ--DNY 163 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~---~~l~~~G~~~~~~--~~~ 163 (356)
+|||+|||||++|+.||+.|++. |++|+|+||. .+||.|.+.||++.+.+..... . +....+|+..... .+|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH-GAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNW 79 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCH
Confidence 59999999999999999999999 9999999996 6899999999999887665432 2 2233456543211 111
Q ss_pred EEE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414 164 VVI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (356)
Q Consensus 164 ~~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG 239 (356)
... .+...+.+.+ ++...++.|++++.++.+. .+++.+ .+. ...+++|+||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~---~~~~~v---~v~---------------~~~~~~d~vIiAtG 138 (450)
T TIGR01421 80 PELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARF---TKDGTV---EVN---------------GRDYTAPHILIATG 138 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE---ccCCEE---EEC---------------CEEEEeCEEEEecC
Confidence 111 1112222221 2223346799999986432 233332 221 25689999999999
Q ss_pred CCC
Q 018414 240 HDG 242 (356)
Q Consensus 240 g~~ 242 (356)
+..
T Consensus 139 s~p 141 (450)
T TIGR01421 139 GKP 141 (450)
T ss_pred CCC
Confidence 764
No 97
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.32 E-value=5.1e-11 Score=115.92 Aligned_cols=131 Identities=24% Similarity=0.365 Sum_probs=85.5
Q ss_pred CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD 158 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~ 158 (356)
+..+||+|||||++|+++|+.|+++ |++|+|+|+...+.... .. .+ .....+.|+++|+ ++.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~~~~~r-~~-~l------~~~s~~~l~~lgl~~~~~~~~~~~~ 75 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPPYADLR-TT-AL------LGPSIRFLERLGLWARLAPHAAPLQ 75 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCCCCCcc-hh-hC------cHHHHHHHHHhCchhhhHhhcceee
Confidence 4468999999999999999999999 99999999986542110 00 00 1112223333322 000
Q ss_pred ------cc------------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceee
Q 018414 159 ------EQ------------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV 214 (356)
Q Consensus 159 ------~~------------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~ 214 (356)
.. ..+.+..+...+.+.|++.+.+..++. +++++|+++..+++.+. +...
T Consensus 76 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~-v~~~---- 149 (388)
T PRK07494 76 SMRIVDATGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVT-VTLA---- 149 (388)
T ss_pred EEEEEeCCCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEE-EEEC----
Confidence 00 011123345677788888877555676 77999999988777654 4332
Q ss_pred ecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 215 SMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 215 ~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+..+++||.||.|+|..+.
T Consensus 150 ----------~g~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 150 ----------DGTTLSARLVVGADGRNSP 168 (388)
T ss_pred ----------CCCEEEEeEEEEecCCCch
Confidence 1357999999999998764
No 98
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.32 E-value=2.7e-11 Score=119.83 Aligned_cols=134 Identities=19% Similarity=0.283 Sum_probs=94.2
Q ss_pred EECCCHHHHHHHHHhhcCCCCeEEEEeccCC--CCCccccCCcc--------------------chhhh-----------
Q 018414 95 VVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--PGGGAWLGGQL--------------------FSAMV----------- 141 (356)
Q Consensus 95 IIGgG~aGl~aA~~La~~~G~~V~llEk~~~--~Gg~~~~~g~~--------------------~~~~~----------- 141 (356)
|||+|.+|++||++|++. |.+|+||||... .|+.++..+.. +..+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~-Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l 79 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA-GASVLLLEAAPRARRGGNARHGRNIRVAHDIPTDFQRDSYPAEEFERDLAPVTGGRTNESL 79 (432)
T ss_pred CCcccHHHHHHHHHHHhC-CCcEEEEeCCCCCcCCcCcccccchhhcccchhhhhhhhccHHHHHHHHHHhhCCCCCHHH
Confidence 799999999999999999 999999999874 35544322110 00000
Q ss_pred ----c--cchHHHHHHHhCCCccccC--CeEE-------EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeE
Q 018414 142 ----V--RKPAHIFLDELGIDYDEQD--NYVV-------IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRV 204 (356)
Q Consensus 142 ----~--~~~~~~~l~~~G~~~~~~~--~~~~-------~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v 204 (356)
. ....++||+++|++|.... .++. ......+.+.|.+.+. +.|++++++++|++|+.+ ++++
T Consensus 80 ~~~~~~~s~~~i~wl~~~Gv~f~~~~~g~~~~~~~~~~~~~~g~~l~~~L~~~a~-~~Gv~i~~~~~v~~l~~~~~~g~v 158 (432)
T TIGR02485 80 SRLGIGRGSRDLRWAFAHGVHLQPPAAGNLPYSRRTAFLRGGGKALTNALYSSAE-RLGVEIRYGIAVDRIPPEAFDGAH 158 (432)
T ss_pred HHHHHhcchhHHHHHHhCCceeeecCCCCccccCceeeecCCHHHHHHHHHHHHH-HcCCEEEeCCEEEEEEecCCCCeE
Confidence 0 1134688999999885431 1111 1124567778877776 679999999999999886 5778
Q ss_pred EEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 205 GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 205 ~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.++.... +..+++||.||+|||+++.
T Consensus 159 ~gv~~~~-------------~~~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 159 DGPLTTV-------------GTHRITTQALVLAAGGLGA 184 (432)
T ss_pred EEEEEcC-------------CcEEEEcCEEEEcCCCccc
Confidence 8876531 1357899999999998874
No 99
>PRK06370 mercuric reductase; Validated
Probab=99.31 E-value=3e-11 Score=120.54 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=84.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHH----HHHHHhCCCccc--cCCe
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAH----IFLDELGIDYDE--QDNY 163 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~----~~l~~~G~~~~~--~~~~ 163 (356)
+|||+|||+|++|+.+|+.|++. |++|+|+|+. .+||+|.+.||++.+.+...... +....+|+.... ..+|
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 82 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGL-GMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDF 82 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCH
Confidence 59999999999999999999999 9999999996 68999999999998877665322 223345665321 1122
Q ss_pred EEE-echHHH----HHHHHHHHHcCC-CcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414 164 VVI-KHAALF----TSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237 (356)
Q Consensus 164 ~~~-~~~~~~----~~~l~~~~~~~~-gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A 237 (356)
... .+.... ...+.+.+ ++. |++++.++.+. .++..+ .+. ..++++|+||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~gv~v~~g~~~~---~~~~~v---~v~---------------~~~~~~d~lViA 140 (463)
T PRK06370 83 KAVMARKRRIRARSRHGSEQWL-RGLEGVDVFRGHARF---ESPNTV---RVG---------------GETLRAKRIFIN 140 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH-hcCCCcEEEEEEEEE---ccCCEE---EEC---------------cEEEEeCEEEEc
Confidence 111 111111 12222333 344 99999886542 233332 221 256899999999
Q ss_pred CCCCC
Q 018414 238 CGHDG 242 (356)
Q Consensus 238 tGg~~ 242 (356)
||...
T Consensus 141 TGs~p 145 (463)
T PRK06370 141 TGARA 145 (463)
T ss_pred CCCCC
Confidence 99764
No 100
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.31 E-value=1.1e-11 Score=123.58 Aligned_cols=134 Identities=20% Similarity=0.293 Sum_probs=84.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHH---HHHhCCCcccc-CCeE
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIF---LDELGIDYDEQ-DNYV 164 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~---l~~~G~~~~~~-~~~~ 164 (356)
+|||+|||||++|+.||+.|++. |++|+|+||.. .||.|++.||++.+.+.... ..++ ...+|+.+... .+|.
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 81 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFK 81 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHH
Confidence 59999999999999999999999 99999999986 89999999999987665542 2222 33455543211 0111
Q ss_pred E-EechHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414 165 V-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 165 ~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg 240 (356)
. ..+...+.+.+ ++...++.|++++.++ ++.+ +...+. +...+ ...++++|+||+|||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~--~~~~~~-v~~~~-------------~~~~~~~d~lViAtGs 144 (462)
T PRK06416 82 KVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGE-AKLV--DPNTVR-VMTED-------------GEQTYTAKNIILATGS 144 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEc--cCCEEE-EecCC-------------CcEEEEeCEEEEeCCC
Confidence 0 01111112222 2233346799999884 3322 333222 22110 1257999999999997
Q ss_pred CC
Q 018414 241 DG 242 (356)
Q Consensus 241 ~~ 242 (356)
..
T Consensus 145 ~p 146 (462)
T PRK06416 145 RP 146 (462)
T ss_pred CC
Confidence 64
No 101
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.31 E-value=3.9e-11 Score=121.88 Aligned_cols=136 Identities=21% Similarity=0.247 Sum_probs=86.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC-------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------------- 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~------------- 156 (356)
.+||+|||||++|+++|+.|+++ |++|+|+||...+..... + ........+.|+++|+.
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~~~~~~r--a-----~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~ 81 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPTLYDLPR--A-----VGIDDEALRVLQAIGLADEVLPHTTPNHGM 81 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCc--e-----eeeCHHHHHHHHHcCChhHHHhhcccCCce
Confidence 58999999999999999999999 999999999875432110 0 01111122223332221
Q ss_pred -ccc-cC--------------CeE--EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414 157 -YDE-QD--------------NYV--VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 157 -~~~-~~--------------~~~--~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~ 218 (356)
|.. .+ .|+ ...+...+.+.|.+.+.+..|++++++++++++..+++.+.. ...+ .
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v-~~~~------~ 154 (538)
T PRK06183 82 RFLDAKGRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTV-TLTD------A 154 (538)
T ss_pred EEEcCCCCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEE-EEEc------C
Confidence 100 00 011 112334555667777765569999999999999988776543 2321 0
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 219 DTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+|+..+++||+||.|+|.++.+
T Consensus 155 ----~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 155 ----DGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred ----CCCEEEEEEEEEEecCCCchhH
Confidence 1234689999999999987643
No 102
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.30 E-value=4.9e-11 Score=121.46 Aligned_cols=41 Identities=32% Similarity=0.595 Sum_probs=37.3
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
.++||+|||+|++|+++|+.|+++ |++|+||||....||++
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~-G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHR-GLSTVVVEKAPHYGGST 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCCCccc
Confidence 469999999999999999999999 99999999998777644
No 103
>PLN02507 glutathione reductase
Probab=99.30 E-value=2.1e-11 Score=122.63 Aligned_cols=137 Identities=22% Similarity=0.237 Sum_probs=88.5
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEec---------cCCCCCccccCCccchhhhccchH----HHHHHHhCC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ---------SVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGI 155 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk---------~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~ 155 (356)
.+|||+|||+|++|+.+|..|++. |++|+|||+ ...+||.|++.||++.+.+..... .+...++|+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~ 102 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF-GAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW 102 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence 369999999999999999999999 999999996 246899999999999888766532 234455676
Q ss_pred CccccC--CeEE-EechHHHH---HHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE
Q 018414 156 DYDEQD--NYVV-IKHAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM 229 (356)
Q Consensus 156 ~~~~~~--~~~~-~~~~~~~~---~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i 229 (356)
...... +|.. ..+..... ...++.+.++.|++++.+ ++..+ +.+.+ .|...+ ++..++
T Consensus 103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~v--d~~~v-~V~~~~------------g~~~~~ 166 (499)
T PLN02507 103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIV--GPNEV-EVTQLD------------GTKLRY 166 (499)
T ss_pred ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEe--cCCEE-EEEeCC------------CcEEEE
Confidence 542211 1111 11111111 122334444679999887 44443 22332 222221 123468
Q ss_pred EcCEEEEcCCCCC
Q 018414 230 EAKVVVSSCGHDG 242 (356)
Q Consensus 230 ~Ak~VI~AtGg~~ 242 (356)
++|+||+|||...
T Consensus 167 ~~d~LIIATGs~p 179 (499)
T PLN02507 167 TAKHILIATGSRA 179 (499)
T ss_pred EcCEEEEecCCCC
Confidence 9999999999764
No 104
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.30 E-value=7.2e-11 Score=115.71 Aligned_cols=136 Identities=19% Similarity=0.292 Sum_probs=86.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCCccchhhhccchHHHHHHHhCCC----------cc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID----------YD 158 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~-~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~----------~~ 158 (356)
.+||+|||||++|+++|+.|++. |++|+|+|+. ....-+.. .+ ...........+.|+++|+. +.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~~~~~~~~~~-~~--~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 79 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQLPEEALNEL-PD--VRVSALSRSSEHILRNLGAWQGIEARRAAPYI 79 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCCCCcccccCC-CC--cceecccHHHHHHHHhCCchhhhhhhhCCccc
Confidence 48999999999999999999999 9999999996 22110000 00 00011122334444444431 00
Q ss_pred ------cc--------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414 159 ------EQ--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 159 ------~~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~ 218 (356)
.. ..+....+...+.+.|++.+.+..|++++++++|+++..+++.+. +...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~-v~~~~------- 151 (405)
T PRK08850 80 AMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAW-LTLDN------- 151 (405)
T ss_pred EEEEEeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEE-EEECC-------
Confidence 00 001112234566678888887556899999999999987766543 43321
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 219 DTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+.+++||.||.|+|..+.+
T Consensus 152 -------g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 152 -------GQALTAKLVVGADGANSWL 170 (405)
T ss_pred -------CCEEEeCEEEEeCCCCChh
Confidence 3579999999999977643
No 105
>PRK06834 hypothetical protein; Provisional
Probab=99.30 E-value=4.7e-11 Score=119.71 Aligned_cols=131 Identities=21% Similarity=0.242 Sum_probs=82.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------C----
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D---- 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~---- 156 (356)
++||+|||||++|+++|+.|+++ |++|+||||...+.........+ .....+.|+++|+ .
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~~~~~~~Ra~~l------~~~s~~~L~~lGl~~~l~~~~~~~~~~ 75 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPNQELVGSRAGGL------HARTLEVLDQRGIADRFLAQGQVAQVT 75 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCCcceeeE------CHHHHHHHHHcCcHHHHHhcCCccccc
Confidence 48999999999999999999999 99999999986432100001111 1111222222222 0
Q ss_pred --------cccc---CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC
Q 018414 157 --------YDEQ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (356)
Q Consensus 157 --------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (356)
+... ..+........+.+.|.+.+. +.|++++++++++++..+++.+. +... +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~-~~gv~i~~~~~v~~v~~~~~~v~-v~~~--------------~ 139 (488)
T PRK06834 76 GFAATRLDISDFPTRHNYGLALWQNHIERILAEWVG-ELGVPIYRGREVTGFAQDDTGVD-VELS--------------D 139 (488)
T ss_pred eeeeEecccccCCCCCCccccccHHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCeEE-EEEC--------------C
Confidence 0000 011112233455566666665 56999999999999998877554 3332 1
Q ss_pred CeEEEcCEEEEcCCCCCC
Q 018414 226 PNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 226 ~~~i~Ak~VI~AtGg~~~ 243 (356)
..++++++||.|+|.++.
T Consensus 140 g~~i~a~~vVgADG~~S~ 157 (488)
T PRK06834 140 GRTLRAQYLVGCDGGRSL 157 (488)
T ss_pred CCEEEeCEEEEecCCCCC
Confidence 247999999999998774
No 106
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.30 E-value=5.3e-11 Score=114.53 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=106.1
Q ss_pred hHHHHHHHhCCCccccCC---eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC
Q 018414 145 PAHIFLDELGIDYDEQDN---YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ 221 (356)
Q Consensus 145 ~~~~~l~~~G~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~ 221 (356)
..++|+.++|+++...++ ||...++..+.+.|...+. +.||+++++++|++| +++. ..+.+..
T Consensus 58 d~~~fF~~~Gi~~~~e~~grvfP~S~~A~sVv~~L~~~l~-~~gV~i~~~~~V~~i--~~~~-~~v~~~~---------- 123 (376)
T TIGR03862 58 ALQDWARGLGIETFVGSSGRVFPVEMKAAPLLRAWLKRLA-EQGVQFHTRHRWIGW--QGGT-LRFETPD---------- 123 (376)
T ss_pred HHHHHHHHCCCceEECCCCEECCCCCCHHHHHHHHHHHHH-HCCCEEEeCCEEEEE--eCCc-EEEEECC----------
Confidence 356899999998766533 5567788999999999886 789999999999998 3333 3444421
Q ss_pred CCCCCeEEEcCEEEEcCCCCC--CCCC--ccchhhhccCc--ccccccccccccccccceee-eccccccCceeEeceEE
Q 018414 222 SCMDPNVMEAKVVVSSCGHDG--PFGA--TGVKRLKSIGM--IEEVPGMKALDMNSAEDAIV-RLTREVVPGMIVTGMEV 294 (356)
Q Consensus 222 ~~g~~~~i~Ak~VI~AtGg~~--~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~-~~~~e~~~g~~~~~~~~ 294 (356)
+...++||.||+||||.+ ..|. ++++++.++|| .+++|+++++.++.. .++. .+ .|+.+....+
T Consensus 124 ---~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i~~~~PaL~pl~~~~~-~~~~~~L-----~Gv~~~~~~~ 194 (376)
T TIGR03862 124 ---GQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVSVAPFAPANCGFLVDWS-AHFASRF-----AGEPLKRVNA 194 (376)
T ss_pred ---CceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCcccCCcCeeceEEccCc-hhhHhhc-----CCCcccceEE
Confidence 124699999999999965 2232 78999999999 888999999665321 1221 23 7777765544
Q ss_pred EEecCCcccCCccceee-----eehHHHHHH
Q 018414 295 AEIDGAPRMGPTFGAMM-----ISGQKAAHL 320 (356)
Q Consensus 295 ~~~~g~~~~~~~~g~~l-----~sG~~~~~l 320 (356)
.+ +. . ..+|+++ +|||.++++
T Consensus 195 ~~--~~-~--~~~GellFTh~GiSGpavl~l 220 (376)
T TIGR03862 195 TA--GT-Q--QTRGEIVITARGLEGGLIYAL 220 (376)
T ss_pred Ee--CC-e--eEeeeEEEECCCccHHHHHHH
Confidence 44 21 1 2358888 899999998
No 107
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.30 E-value=6.8e-11 Score=115.55 Aligned_cols=132 Identities=18% Similarity=0.335 Sum_probs=85.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------C----
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D---- 156 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~---- 156 (356)
|||+|||||++|+++|+.|+++. |++|+|+||.+.........+ ........+.|+++|+ +
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~-----~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRA-----SAIAAAARRMLEALGVWDEIAPEAQPITDM 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcce-----EEecHHHHHHHHHCCChhhhhhhcCcccEE
Confidence 89999999999999999999981 399999999864211000000 0011112222222222 0
Q ss_pred -----------------ccc----cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeee
Q 018414 157 -----------------YDE----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVS 215 (356)
Q Consensus 157 -----------------~~~----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~ 215 (356)
+.. ...+....+...+.+.|++.+. +.|++++++++|+++..+++.+. +...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~v~-v~~~----- 149 (403)
T PRK07333 77 VITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAE-ALGIDLREATSVTDFETRDEGVT-VTLS----- 149 (403)
T ss_pred EEEeCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHH-hCCCEEEcCCEEEEEEEcCCEEE-EEEC-----
Confidence 000 0112223456778888888876 56999999999999988776553 3332
Q ss_pred cccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 216 MNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 216 ~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++.++++|.||.|+|..+.
T Consensus 150 ---------~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 150 ---------DGSVLEARLLVAADGARSK 168 (403)
T ss_pred ---------CCCEEEeCEEEEcCCCChH
Confidence 1357899999999997764
No 108
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.30 E-value=6.5e-11 Score=117.26 Aligned_cols=139 Identities=18% Similarity=0.338 Sum_probs=84.4
Q ss_pred ccEEEECCCHHHHHHHHHhhc----CCCCeEEEEeccCCCCCcc--c--cCCc-cchhhhccchHHHHHHHhCCC-----
Q 018414 91 TDVVVVGAGSAGLSCAYELSK----NPNIQIAIIEQSVSPGGGA--W--LGGQ-LFSAMVVRKPAHIFLDELGID----- 156 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~----~~G~~V~llEk~~~~Gg~~--~--~~g~-~~~~~~~~~~~~~~l~~~G~~----- 156 (356)
|||+|||||++|+++|+.|++ + |++|+|||+.+.+.-.. + ..+. ............+.|+++|+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~ 79 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQS 79 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhh
Confidence 699999999999999999998 7 99999999954322110 0 0000 001111122233333333320
Q ss_pred ---------------------cccc---CCeEEEechHHHHHHHHHHHHcCC--CcEEEcCeEEEEEEEe------CCeE
Q 018414 157 ---------------------YDEQ---DNYVVIKHAALFTSTIMSKLLARP--NVKLFNAVAAEDLIVK------GGRV 204 (356)
Q Consensus 157 ---------------------~~~~---~~~~~~~~~~~~~~~l~~~~~~~~--gv~i~~~~~v~~i~~~------~~~v 204 (356)
|+.. ..+....+...+.+.|++.+.+.. +++++++++++++..+ ++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~ 159 (437)
T TIGR01989 80 DRIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNW 159 (437)
T ss_pred hcCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCc
Confidence 1110 011223345677788888887555 6999999999999753 1212
Q ss_pred EEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 205 GGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 205 ~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
..+... ++.+++||+||.|+|.+|.+
T Consensus 160 v~v~~~--------------~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 160 VHITLS--------------DGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred eEEEEc--------------CCCEEEeeEEEEecCCCChh
Confidence 223332 23679999999999977643
No 109
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.29 E-value=8.8e-12 Score=123.74 Aligned_cols=131 Identities=23% Similarity=0.300 Sum_probs=85.6
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHH---HHHhCCCcccc-CCeE
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIF---LDELGIDYDEQ-DNYV 164 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~---l~~~G~~~~~~-~~~~ 164 (356)
+|||+||||||+|++||+.|++. |++|+|+|+. .+||.|.+.||++.+.+..... .+. ...+|+..... -+|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 79 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWK 79 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHH
Confidence 59999999999999999999999 9999999995 7899999999999988766532 222 33455543211 1111
Q ss_pred E-Eech----HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414 165 V-IKHA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (356)
Q Consensus 165 ~-~~~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG 239 (356)
. ..+. ..+... ++...++.|++++.+ ++..+. .+.+. +. . +...+++|+||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~l~~~gV~~~~g-~~~~v~--~~~v~-v~-~--------------~g~~~~~d~lIiATG 139 (446)
T TIGR01424 80 KLLQKKDDEIARLSGL-YKRLLANAGVELLEG-RARLVG--PNTVE-VL-Q--------------DGTTYTAKKILIAVG 139 (446)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhCCcEEEEE-EEEEec--CCEEE-Ee-c--------------CCeEEEcCEEEEecC
Confidence 0 0111 122233 233334679999877 554442 22221 11 1 125789999999999
Q ss_pred CCC
Q 018414 240 HDG 242 (356)
Q Consensus 240 g~~ 242 (356)
...
T Consensus 140 s~p 142 (446)
T TIGR01424 140 GRP 142 (446)
T ss_pred CcC
Confidence 764
No 110
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.29 E-value=8.7e-11 Score=113.81 Aligned_cols=132 Identities=20% Similarity=0.383 Sum_probs=85.1
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc--ccCCccchhhhccchHHHHHHHhCC----------C---
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA--WLGGQLFSAMVVRKPAHIFLDELGI----------D--- 156 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~--~~~g~~~~~~~~~~~~~~~l~~~G~----------~--- 156 (356)
||+|||||++|+++|+.|+++ |++|+|+||...++-.. +.+..+ .......+.|+++|+ +
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~~~~~~~~~~~~~----~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 75 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAEAAATPGFDNRVS----ALSAASIRLLEKLGVWDKIEPDRAQPIRD 75 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCccccCCCCCCccee----ecCHHHHHHHHHCCchhhhhhhcCCCceE
Confidence 799999999999999999999 99999999997653110 000000 011111222222222 1
Q ss_pred -------------cccc----CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC
Q 018414 157 -------------YDEQ----DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219 (356)
Q Consensus 157 -------------~~~~----~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~ 219 (356)
+... ..+....+...+.+.|++.+.+..+++++++++|+++..+++.+. +...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~-v~~~~-------- 146 (385)
T TIGR01988 76 IHVSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVE-LTLDD-------- 146 (385)
T ss_pred EEEEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeE-EEECC--------
Confidence 1000 011223445678888888887444499999999999988776553 43321
Q ss_pred CCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 220 TQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 220 ~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+.++.+|.||.|+|..+.
T Consensus 147 ------g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 147 ------GQQLRARLLVGADGANSK 164 (385)
T ss_pred ------CCEEEeeEEEEeCCCCCH
Confidence 356999999999998764
No 111
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.29 E-value=8.6e-11 Score=114.67 Aligned_cols=135 Identities=20% Similarity=0.212 Sum_probs=84.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC--CCccccCCccchhhhccchHHHHHHHhCCC---------cc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP--GGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD 158 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~--Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~ 158 (356)
++||+|||||++|+++|+.|++. |++|+|+||.... .+... .+ .......+.|+++|+. ..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~~~~~~~~~-a~------~l~~~~~~~l~~lGl~~~l~~~~~~~~ 73 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSREYVEGRIR-AG------VLEQGTVDLLREAGVGERMDREGLVHD 73 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCccccccccc-ee------EECHhHHHHHHHcCChHHHHhcCCccC
Confidence 47999999999999999999999 9999999998642 11000 00 1122333444444431 00
Q ss_pred -----ccC-------------CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE-eCCeEEEEEEcceeeecccC
Q 018414 159 -----EQD-------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGGRVGGVVTNWALVSMNHD 219 (356)
Q Consensus 159 -----~~~-------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~-~~~~v~gv~~~~~~~~~~~~ 219 (356)
..+ ......+...+.+.|++.+. +.|++++++++++++.. +++.+ .|....
T Consensus 74 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~-~~gv~v~~~~~v~~i~~~~~~~~-~V~~~~-------- 143 (392)
T PRK08243 74 GIELRFDGRRHRIDLTELTGGRAVTVYGQTEVTRDLMAARL-AAGGPIRFEASDVALHDFDSDRP-YVTYEK-------- 143 (392)
T ss_pred cEEEEECCEEEEeccccccCCceEEEeCcHHHHHHHHHHHH-hCCCeEEEeeeEEEEEecCCCce-EEEEEc--------
Confidence 000 00111123456677777765 57999999999999876 33333 333321
Q ss_pred CCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 220 TQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 220 ~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
+|+..+++||+||.|+|..|.+.
T Consensus 144 ---~G~~~~i~ad~vVgADG~~S~vR 166 (392)
T PRK08243 144 ---DGEEHRLDCDFIAGCDGFHGVSR 166 (392)
T ss_pred ---CCeEEEEEeCEEEECCCCCCchh
Confidence 12346799999999999887543
No 112
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.28 E-value=1.1e-10 Score=113.90 Aligned_cols=135 Identities=22% Similarity=0.337 Sum_probs=84.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCC-ccccC-Ccc-----ch------hhhccc--hHHHHHHHhC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGG-GAWLG-GQL-----FS------AMVVRK--PAHIFLDELG 154 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg-~~~~~-g~~-----~~------~~~~~~--~~~~~l~~~G 154 (356)
+||+|||||++|+++|++|+++ +|++|+|+||...++. .++.. |.+ +. .+.... ...++.++++
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 82 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQHG 82 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999984 5899999999865432 22211 111 00 000000 0012222333
Q ss_pred CCccccCCeE---------------------------------------------------EEechHHHHHHHHHHHHcC
Q 018414 155 IDYDEQDNYV---------------------------------------------------VIKHAALFTSTIMSKLLAR 183 (356)
Q Consensus 155 ~~~~~~~~~~---------------------------------------------------~~~~~~~~~~~l~~~~~~~ 183 (356)
++|...+.+. -..+...+.+.|.+.+. +
T Consensus 83 ~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~-~ 161 (393)
T PRK11728 83 IPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQ-A 161 (393)
T ss_pred CCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHH-h
Confidence 3332111100 01234566677777776 6
Q ss_pred CCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 184 PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 184 ~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.|++++++++|+++..+++.+ .+.+. ..+++++.||+|+|.++
T Consensus 162 ~Gv~i~~~~~V~~i~~~~~~~-~V~~~---------------~g~i~ad~vV~A~G~~s 204 (393)
T PRK11728 162 RGGEIRLGAEVTALDEHANGV-VVRTT---------------QGEYEARTLINCAGLMS 204 (393)
T ss_pred CCCEEEcCCEEEEEEecCCeE-EEEEC---------------CCEEEeCEEEECCCcch
Confidence 799999999999998776654 34442 13699999999999765
No 113
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.28 E-value=4.8e-11 Score=118.91 Aligned_cols=54 Identities=33% Similarity=0.471 Sum_probs=48.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhcc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR 143 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~ 143 (356)
.+|||+|||||++|+.+|+.|++. |++|+|+|+...+||.|++.||++.+.+..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~GG~~~~~gcipsk~l~~ 57 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNVGGGCTHTGTIPSKALRE 57 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccccccccccCCCCHHHHHH
Confidence 469999999999999999999999 999999999888999999999988766543
No 114
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.28 E-value=1.6e-11 Score=122.82 Aligned_cols=138 Identities=15% Similarity=0.245 Sum_probs=87.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HH---HHHHhCCCcccc-CCeE
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HI---FLDELGIDYDEQ-DNYV 164 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~---~l~~~G~~~~~~-~~~~ 164 (356)
.|||+|||||++|+.+|+.|++. |++|+|+|+. .+||+|.+.||++.+.+..... .+ ....+|+..... .+|.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 81 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFA 81 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHH
Confidence 59999999999999999999999 9999999996 7899999999999887765422 22 233455543211 1111
Q ss_pred EE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEe----CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414 165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVK----GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236 (356)
Q Consensus 165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~----~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~ 236 (356)
.. .+...+.+.+ +..+.++.|++++.+ .++.+..+ +++-..|...+ ++..++++|+||+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~------------g~~~~~~~d~lVi 148 (472)
T PRK05976 82 KVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETET------------GENEMIIPENLLI 148 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCC------------CceEEEEcCEEEE
Confidence 11 1112222222 223334679999998 44444322 01122232221 1235799999999
Q ss_pred cCCCCC
Q 018414 237 SCGHDG 242 (356)
Q Consensus 237 AtGg~~ 242 (356)
|||...
T Consensus 149 ATGs~p 154 (472)
T PRK05976 149 ATGSRP 154 (472)
T ss_pred eCCCCC
Confidence 999765
No 115
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.28 E-value=1.6e-11 Score=114.84 Aligned_cols=137 Identities=25% Similarity=0.332 Sum_probs=93.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCc-------cccCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY-------DEQDN 162 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~-------~~~~~ 162 (356)
.+||||||+|.+|.+.|+.|++. |.||.||||.-..- .....-+.+......|.++|+.- ++..+
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl~EP-------dRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~G 116 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKD-GRRVHVIERDLSEP-------DRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTG 116 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhC-CcEEEEEecccccc-------hHHHHHhcCcchhHHHHHhCHHHHhhcccceEeee
Confidence 58999999999999999999999 99999999974210 00000111122223333333310 00000
Q ss_pred -------------eE----------EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC
Q 018414 163 -------------YV----------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD 219 (356)
Q Consensus 163 -------------~~----------~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~ 219 (356)
|+ ..-|...|.+.|.+++...+||++..+ .|.++..+++.|.||...+ .
T Consensus 117 y~ifk~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeG-tV~sLlee~gvvkGV~yk~------k- 188 (509)
T KOG1298|consen 117 YAIFKDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEG-TVKSLLEEEGVVKGVTYKN------K- 188 (509)
T ss_pred eEEEeCCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeee-eHHHHHhccCeEEeEEEec------C-
Confidence 11 122557888999999988999999988 7889999999999998853 1
Q ss_pred CCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 220 TQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 220 ~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
.++..+..|...|+|+|.++.+.
T Consensus 189 ---~gee~~~~ApLTvVCDGcfSnlR 211 (509)
T KOG1298|consen 189 ---EGEEVEAFAPLTVVCDGCFSNLR 211 (509)
T ss_pred ---CCceEEEecceEEEecchhHHHH
Confidence 12347788999999999887433
No 116
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.28 E-value=8.7e-11 Score=113.97 Aligned_cols=133 Identities=24% Similarity=0.340 Sum_probs=84.6
Q ss_pred cEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC---------cc---
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------YD--- 158 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~~--- 158 (356)
||+|||||++|+++|+.|+++ | ++|+|+||...+.-.. ++ ............+.|+++|+. ..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~~~~~--~~-~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSPSAAQP--GF-DARSLALSYGSKQILEKLGLWPKLAPFATPILDIH 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCccccCC--CC-CCeeEeccHHHHHHHHHCCChhhhHhhcCccceEE
Confidence 799999999999999999999 9 9999999986543210 00 000000111112233333321 00
Q ss_pred --cc---------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC
Q 018414 159 --EQ---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ 221 (356)
Q Consensus 159 --~~---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~ 221 (356)
.. ....+..+...+.+.|.+.+.+..|++++++++|+++..+++.+. +...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~-v~~~~---------- 145 (382)
T TIGR01984 77 VSDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVR-VTLDN---------- 145 (382)
T ss_pred EEcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEE-EEECC----------
Confidence 00 000122345678888888886446999999999999987776543 33321
Q ss_pred CCCCCeEEEcCEEEEcCCCCCC
Q 018414 222 SCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 222 ~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
..+++||.||.|+|..+.
T Consensus 146 ----g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 146 ----GQQLRAKLLIAADGANSK 163 (382)
T ss_pred ----CCEEEeeEEEEecCCChH
Confidence 357999999999997763
No 117
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.27 E-value=1.3e-10 Score=118.21 Aligned_cols=135 Identities=22% Similarity=0.324 Sum_probs=85.5
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc-
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD- 158 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~- 158 (356)
..+||+|||||++|+++|+.|+++ |++|+|+||...+....- .........+.|+++|+ .+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~~~~~~~r-------a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~ 93 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDDTLSTGSR-------AICFAKRSLEIFDRLGCGERMVDKGVSWNV 93 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCCCCCCe-------EEEEcHHHHHHHHHcCCcHHHHhhCceeec
Confidence 468999999999999999999999 999999999875432110 00111122223333222 110
Q ss_pred -----c---------c----CCe--EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414 159 -----E---------Q----DNY--VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 159 -----~---------~----~~~--~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~ 218 (356)
. . ..+ ....+...+.+.|.+.+.+..+++++++++++++..+++.+.. ....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v-~~~~------- 165 (547)
T PRK08132 94 GKVFLRDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTL-TVET------- 165 (547)
T ss_pred eeEEeCCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEE-EEEC-------
Confidence 0 0 001 1112334566777777765568999999999999887765542 2211
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 219 DTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 219 ~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.+ ...++++|+||.|+|.++.
T Consensus 166 ~~----g~~~i~ad~vVgADG~~S~ 186 (547)
T PRK08132 166 PD----GPYTLEADWVIACDGARSP 186 (547)
T ss_pred CC----CcEEEEeCEEEECCCCCcH
Confidence 00 1247999999999998764
No 118
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.27 E-value=1.9e-10 Score=114.06 Aligned_cols=145 Identities=18% Similarity=0.235 Sum_probs=83.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc----hHH-HHHHHh------CC--C
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK----PAH-IFLDEL------GI--D 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~----~~~-~~l~~~------G~--~ 156 (356)
+|||+||||||+|+++|+.|+++ |++|+|+||..... .. .++.+....+... ... ..+... +. .
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~~~~-k~-cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~ 115 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKG-GIETFLIERKLDNA-KP-CGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 115 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCC-CC-ccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence 59999999999999999999999 99999999975321 11 1222221111110 000 111111 11 1
Q ss_pred ccc---cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--CeEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414 157 YDE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALVSMNHDTQSCMDPNVMEA 231 (356)
Q Consensus 157 ~~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A 231 (356)
+.. ...|....+...+.+.|.+++. +.|++++.+ .++++..++ +....+.+... ......++..+++|
T Consensus 116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~-~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~-----~~~~~~g~~~~v~a 188 (450)
T PLN00093 116 IGKTLKPHEYIGMVRREVLDSFLRERAQ-SNGATLING-LFTRIDVPKDPNGPYVIHYTSY-----DSGSGAGTPKTLEV 188 (450)
T ss_pred ecccCCCCCeEEEecHHHHHHHHHHHHH-HCCCEEEec-eEEEEEeccCCCCcEEEEEEec-----cccccCCCccEEEe
Confidence 111 0123334566788888888876 579999876 577776432 22223333210 00000123467999
Q ss_pred CEEEEcCCCCCCC
Q 018414 232 KVVVSSCGHDGPF 244 (356)
Q Consensus 232 k~VI~AtGg~~~~ 244 (356)
|.||.|+|..+.+
T Consensus 189 ~~VIgADG~~S~v 201 (450)
T PLN00093 189 DAVIGADGANSRV 201 (450)
T ss_pred CEEEEcCCcchHH
Confidence 9999999977643
No 119
>PRK07236 hypothetical protein; Provisional
Probab=99.26 E-value=1.1e-10 Score=113.70 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=83.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcccc---------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ--------- 160 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~--------- 160 (356)
.+||+|||||++|+++|+.|+++ |++|+|+||.+..... .++. +.......+.|+++|+.-...
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~--~g~g----i~l~~~~~~~l~~lg~~~~~~~~~~~~~~~ 78 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPTELDG--RGAG----IVLQPELLRALAEAGVALPADIGVPSRERI 78 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCcCC--CCce----eEeCHHHHHHHHHcCCCcccccccCccceE
Confidence 58999999999999999999999 9999999998642110 0110 112233456666666531100
Q ss_pred -----CCeE-------EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeE
Q 018414 161 -----DNYV-------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV 228 (356)
Q Consensus 161 -----~~~~-------~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~ 228 (356)
+... ...+...+.+.|++.+ .+++++++++|+++..+++.+. +...+ +.+
T Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~i~~~~~v~~i~~~~~~v~-v~~~~--------------g~~ 140 (386)
T PRK07236 79 YLDRDGRVVQRRPMPQTQTSWNVLYRALRAAF---PAERYHLGETLVGFEQDGDRVT-ARFAD--------------GRR 140 (386)
T ss_pred EEeCCCCEeeccCCCccccCHHHHHHHHHHhC---CCcEEEcCCEEEEEEecCCeEE-EEECC--------------CCE
Confidence 0000 0012233344444322 4578999999999988776654 33331 357
Q ss_pred EEcCEEEEcCCCCCCCC
Q 018414 229 MEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 229 i~Ak~VI~AtGg~~~~~ 245 (356)
+++|.||.|+|..|.+.
T Consensus 141 ~~ad~vIgADG~~S~vR 157 (386)
T PRK07236 141 ETADLLVGADGGRSTVR 157 (386)
T ss_pred EEeCEEEECCCCCchHH
Confidence 99999999999887543
No 120
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.25 E-value=1.2e-10 Score=113.53 Aligned_cols=132 Identities=23% Similarity=0.330 Sum_probs=86.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC---------c---
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID---------Y--- 157 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~---------~--- 157 (356)
..||+|||||++|+++|+.|++. |++|+|+||.+.++.... + ........+.|+++|+. .
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~~~~~g~--g-----i~l~~~~~~~l~~lg~~~~~~~~~~~~~~~ 75 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAEIGEIGA--G-----IQLGPNAFSALDALGVGEAARQRAVFTDHL 75 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCcccccccc--e-----eeeCchHHHHHHHcCChHHHHhhccCCcce
Confidence 47999999999999999999999 999999999876542110 0 01111222233333220 0
Q ss_pred ---cc-c----------------CCe-EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeec
Q 018414 158 ---DE-Q----------------DNY-VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 216 (356)
Q Consensus 158 ---~~-~----------------~~~-~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~ 216 (356)
+. . ... ....+...+.+.|++.+.+..+++++++++++++..+++.+. +...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~-v~~~------ 148 (396)
T PRK08163 76 TMMDAVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVT-VFDQ------ 148 (396)
T ss_pred EEEeCCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceE-EEEc------
Confidence 00 0 000 123355677788888876555699999999999987766544 3332
Q ss_pred ccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 217 NHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 217 ~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
++.++.||.||.|+|.++..
T Consensus 149 --------~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 149 --------QGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred --------CCCEEecCEEEECCCcChHH
Confidence 13579999999999987743
No 121
>PRK06116 glutathione reductase; Validated
Probab=99.25 E-value=2.4e-11 Score=120.79 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=84.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHH----HHHhCCCcccc-CCe
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIF----LDELGIDYDEQ-DNY 163 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~----l~~~G~~~~~~-~~~ 163 (356)
+|||+|||||++|++||+.|++. |++|+|+|+. .+||.|.+.||++.+.+..... .+. ...+|+..... .+|
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCH
Confidence 59999999999999999999999 9999999996 7899999999999987766532 222 23355543211 111
Q ss_pred EEEe-ch----HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414 164 VVIK-HA----ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (356)
Q Consensus 164 ~~~~-~~----~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At 238 (356)
.... .. ..+... +++..++.|++++.++ ++.+ +... +.+. ..++++|+||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~-~~~~l~~~gv~~~~g~-~~~v--~~~~---v~~~---------------g~~~~~d~lViAT 139 (450)
T PRK06116 82 AKLIANRDAYIDRLHGS-YRNGLENNGVDLIEGF-ARFV--DAHT---VEVN---------------GERYTADHILIAT 139 (450)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhCCCEEEEEE-EEEc--cCCE---EEEC---------------CEEEEeCEEEEec
Confidence 1100 00 111222 2233346799998884 4433 2222 2221 2569999999999
Q ss_pred CCCC
Q 018414 239 GHDG 242 (356)
Q Consensus 239 Gg~~ 242 (356)
|...
T Consensus 140 Gs~p 143 (450)
T PRK06116 140 GGRP 143 (450)
T ss_pred CCCC
Confidence 9764
No 122
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.23 E-value=9.7e-11 Score=117.27 Aligned_cols=140 Identities=19% Similarity=0.259 Sum_probs=86.7
Q ss_pred cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEecc--------CCCCCccccCCccchhhhccchH-HHHH---HHhCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQS--------VSPGGGAWLGGQLFSAMVVRKPA-HIFL---DELGID 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~--------~~~Gg~~~~~g~~~~~~~~~~~~-~~~l---~~~G~~ 156 (356)
+|||+|||+|++|..+|+.+++ . |++|+|||+. ..+||+|.+.||++.+.+..... .+.+ ..+|+.
T Consensus 3 ~~DviVIG~G~~G~~aA~~aa~~~-g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~ 81 (486)
T TIGR01423 3 AFDLVVIGAGSGGLEAGWNAATLY-KKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE 81 (486)
T ss_pred ccCEEEECCChHHHHHHHHHHHhc-CCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence 5999999999999999999999 5 8999999984 46899999999999998877642 2333 345654
Q ss_pred cccc---CCeEE-EechHHHHHHH---HHHHHcC-CCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeE
Q 018414 157 YDEQ---DNYVV-IKHAALFTSTI---MSKLLAR-PNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNV 228 (356)
Q Consensus 157 ~~~~---~~~~~-~~~~~~~~~~l---~~~~~~~-~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~ 228 (356)
.... -+|.. ..+...+...+ +....++ .|++++.+.. ...+++.+ .|... .++...+..+
T Consensus 82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a---~f~~~~~v-~V~~~--------~~~~~~~~~~ 149 (486)
T TIGR01423 82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWG---ALEDKNVV-LVRES--------ADPKSAVKER 149 (486)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEE---EEccCCEE-EEeec--------cCCCCCcceE
Confidence 3211 11211 11222222222 1222334 5899998852 22233332 22211 0000011357
Q ss_pred EEcCEEEEcCCCCC
Q 018414 229 MEAKVVVSSCGHDG 242 (356)
Q Consensus 229 i~Ak~VI~AtGg~~ 242 (356)
+++|+||+|||+..
T Consensus 150 ~~~d~lIIATGs~p 163 (486)
T TIGR01423 150 LQAEHILLATGSWP 163 (486)
T ss_pred EECCEEEEecCCCC
Confidence 99999999999765
No 123
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.23 E-value=2.1e-10 Score=114.30 Aligned_cols=36 Identities=28% Similarity=0.591 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVS 125 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~ 125 (356)
++||+|||||++|+++|++|+++ ||.+|+|||++..
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 58999999999999999999985 5899999999754
No 124
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.23 E-value=2.1e-10 Score=110.74 Aligned_cols=35 Identities=34% Similarity=0.675 Sum_probs=32.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~ 126 (356)
|||+|||||++|+++|++|+++ |.+|+|||+....
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~~ 35 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSRA 35 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 5999999999999999999999 9999999998643
No 125
>PLN02697 lycopene epsilon cyclase
Probab=99.23 E-value=9.5e-11 Score=117.82 Aligned_cols=133 Identities=14% Similarity=0.225 Sum_probs=82.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHH-h---CCCcccc----
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDE-L---GIDYDEQ---- 160 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~-~---G~~~~~~---- 160 (356)
..|||+|||||++|+++|+.|++. |++|+|||+....... | +++...+......+.+.. + -+.+...
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~~p~~~n-~---GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~ 181 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDLPFTNN-Y---GVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM 181 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCcccCCCc-c---ccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence 359999999999999999999999 9999999986432211 1 111111100000011111 1 0001100
Q ss_pred -CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414 161 -DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (356)
Q Consensus 161 -~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG 239 (356)
...+...+...+.+.|++++. +.|+++ .+++|+++..+++.+..+.+. +..+++|+.||+|+|
T Consensus 182 ~~~~Yg~V~R~~L~~~Ll~~a~-~~GV~~-~~~~V~~I~~~~~~~~vv~~~--------------dG~~i~A~lVI~AdG 245 (529)
T PLN02697 182 IGRAYGRVSRTLLHEELLRRCV-ESGVSY-LSSKVDRITEASDGLRLVACE--------------DGRVIPCRLATVASG 245 (529)
T ss_pred ccCcccEEcHHHHHHHHHHHHH-hcCCEE-EeeEEEEEEEcCCcEEEEEEc--------------CCcEEECCEEEECCC
Confidence 011112456778888888886 579998 566999988766655444443 136799999999999
Q ss_pred CCC
Q 018414 240 HDG 242 (356)
Q Consensus 240 g~~ 242 (356)
..+
T Consensus 246 ~~S 248 (529)
T PLN02697 246 AAS 248 (529)
T ss_pred cCh
Confidence 877
No 126
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.23 E-value=2.1e-10 Score=112.29 Aligned_cols=144 Identities=19% Similarity=0.240 Sum_probs=83.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHHHH----Hh------CCC--c
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIFLD----EL------GID--Y 157 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~l~----~~------G~~--~ 157 (356)
+||+||||||+|++||+.|++. |++|+||||....+..| ++.+....+.... ..+++. .. +.. +
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~~~~~~c--g~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~ 77 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKPDNAKPC--GGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDI 77 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCCCCCCCc--cccccHhhHhhccCchhHHHhhhceeEEecCCceEEEe
Confidence 5899999999999999999999 99999999986443222 3333222221110 001111 10 000 1
Q ss_pred cc---cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414 158 DE---QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 232 (356)
Q Consensus 158 ~~---~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak 232 (356)
.. ...|....+...|.+.|.+++. +.|++++.++ ++++... .+...++.... . ..+...++..+++||
T Consensus 78 ~~~~~~~~~~~~v~R~~~d~~L~~~a~-~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~----~-~~~~~~g~~~~i~a~ 150 (398)
T TIGR02028 78 GRTLKEHEYIGMLRREVLDSFLRRRAA-DAGATLINGL-VTKLSLPADADDPYTLHYIS----S-DSGGPSGTRCTLEVD 150 (398)
T ss_pred ccCCCCCCceeeeeHHHHHHHHHHHHH-HCCcEEEcce-EEEEEeccCCCceEEEEEee----c-cccccCCCccEEEeC
Confidence 10 0122223455777778888876 6799998885 7776532 23333444311 0 000001234679999
Q ss_pred EEEEcCCCCCCC
Q 018414 233 VVVSSCGHDGPF 244 (356)
Q Consensus 233 ~VI~AtGg~~~~ 244 (356)
.||.|+|..+.+
T Consensus 151 ~VIgADG~~S~v 162 (398)
T TIGR02028 151 AVIGADGANSRV 162 (398)
T ss_pred EEEECCCcchHH
Confidence 999999987744
No 127
>PRK07588 hypothetical protein; Provisional
Probab=99.22 E-value=2.9e-10 Score=110.81 Aligned_cols=127 Identities=15% Similarity=0.117 Sum_probs=82.0
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC--ccccCCccchhhhccchHHHHHHHhCC---------Cccc-
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG--GAWLGGQLFSAMVVRKPAHIFLDELGI---------DYDE- 159 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg--~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~~- 159 (356)
||+|||||++|+++|+.|+++ |++|+|+||.+.... ..+. ......+.|+++|+ ++..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~g~~~~---------l~~~~~~~l~~lGl~~~l~~~~~~~~~~ 71 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAPELRTGGYMVD---------FWGVGYEVAKRMGITDQLREAGYQIEHV 71 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCCCccCCCeEEe---------ccCcHHHHHHHcCCHHHHHhccCCccce
Confidence 799999999999999999999 999999999865421 1110 00111122222221 1100
Q ss_pred -----c----------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414 160 -----Q----------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 160 -----~----------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~ 218 (356)
. +......+...+.+.|++.+ ..+++++++++|+++..+++.+. +...+
T Consensus 72 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~~------- 141 (391)
T PRK07588 72 RSVDPTGRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI--DGQVETIFDDSIATIDEHRDGVR-VTFER------- 141 (391)
T ss_pred EEEcCCCCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhh--hcCeEEEeCCEEeEEEECCCeEE-EEECC-------
Confidence 0 00112334456667776654 34799999999999988777654 33331
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 219 DTQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
+.++++|.||.|+|..|...
T Consensus 142 -------g~~~~~d~vIgADG~~S~vR 161 (391)
T PRK07588 142 -------GTPRDFDLVIGADGLHSHVR 161 (391)
T ss_pred -------CCEEEeCEEEECCCCCccch
Confidence 35679999999999887654
No 128
>PRK13748 putative mercuric reductase; Provisional
Probab=99.22 E-value=1.4e-10 Score=118.37 Aligned_cols=55 Identities=24% Similarity=0.417 Sum_probs=50.1
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP 145 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~ 145 (356)
.+|||+|||||++|+.+|+.|++. |++|+|||+. .+||+|.+.||++.+.+....
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~ 151 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERG-TIGGTCVNVGCVPSKIMIRAA 151 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecC-cceeeccccCccccHHHHHHH
Confidence 369999999999999999999999 9999999998 789999999999988776553
No 129
>PRK06847 hypothetical protein; Provisional
Probab=99.22 E-value=2.2e-10 Score=110.87 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=83.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhC---------CCcc--
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELG---------IDYD-- 158 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G---------~~~~-- 158 (356)
..||+|||||++|+++|+.|++. |++|+|+|+...+.... .+.. ......+.|+++| .+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~g--~g~~-----l~~~~~~~l~~~gl~~~~~~~~~~~~~~ 75 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPEWRVYG--AGIT-----LQGNALRALRELGVLDECLEAGFGFDGV 75 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCCccCC--ceee-----ecHHHHHHHHHcCCHHHHHHhCCCccce
Confidence 36999999999999999999999 99999999986542110 0000 0111111222222 1111
Q ss_pred ----ccCC--------------e--EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414 159 ----EQDN--------------Y--VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 159 ----~~~~--------------~--~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~ 218 (356)
..+. + ....+...+.+.|.+.+. +.|++++++++++++..+++.+. +...+
T Consensus 76 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~gv~v~~~~~v~~i~~~~~~~~-v~~~~------- 146 (375)
T PRK06847 76 DLFDPDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAAR-AAGADVRLGTTVTAIEQDDDGVT-VTFSD------- 146 (375)
T ss_pred EEECCCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHH-HhCCEEEeCCEEEEEEEcCCEEE-EEEcC-------
Confidence 0000 0 011234566677777775 56999999999999987766543 33321
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 219 DTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+.++.+|.||+|+|.++..
T Consensus 147 -------g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 147 -------GTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred -------CCEEEcCEEEECcCCCcch
Confidence 3578999999999987754
No 130
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.21 E-value=7.5e-11 Score=118.02 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=85.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEec------cCCCCCccccCCccchhhhccch-HHH----HHHHhCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ------SVSPGGGAWLGGQLFSAMVVRKP-AHI----FLDELGIDYD 158 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk------~~~~Gg~~~~~g~~~~~~~~~~~-~~~----~l~~~G~~~~ 158 (356)
+||++|||+|++|++||+.|++. |++|+|||+ ...+||+|.+.+|++.+.+.... ... .+..+|+++.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~ 82 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVD 82 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhC-CCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCC
Confidence 59999999999999999999999 999999998 24689999999998876654432 112 2245666543
Q ss_pred cc-CCeEEEe-chHHHHH---HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCE
Q 018414 159 EQ-DNYVVIK-HAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKV 233 (356)
Q Consensus 159 ~~-~~~~~~~-~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~ 233 (356)
.. .+|.... +...+.+ .-++.+.+..+++++.+. +..+..+++. ..+.+.. + +..++++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~~~~~~~-~~v~v~~-------~-----~~~~~~~d~ 148 (475)
T PRK06327 83 GVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGR-GSFVGKTDAG-YEIKVTG-------E-----DETVITAKH 148 (475)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEecCCCCC-CEEEEec-------C-----CCeEEEeCE
Confidence 21 1121111 1111221 123334446799999874 4433322211 1122211 0 125799999
Q ss_pred EEEcCCCCC
Q 018414 234 VVSSCGHDG 242 (356)
Q Consensus 234 VI~AtGg~~ 242 (356)
||+|||...
T Consensus 149 lViATGs~p 157 (475)
T PRK06327 149 VIIATGSEP 157 (475)
T ss_pred EEEeCCCCC
Confidence 999999765
No 131
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.21 E-value=3.1e-10 Score=111.06 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=86.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc---
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD--- 158 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~--- 158 (356)
-+|+|||||++|+++|+.|+++ |++|+|+||.+.+.... .+ ........+.|+++|+ ...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~~~~~g--~g-----i~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~ 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQELSEVG--AG-----LQLAPNAMRHLERLGVADRLSGTGVTPKALY 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCccCcCC--cc-----ceeChhHHHHHHHCCChHHHhhcccCcceEE
Confidence 4799999999999999999999 99999999986542110 00 0111122222222222 000
Q ss_pred --c------------------c-CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecc
Q 018414 159 --E------------------Q-DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMN 217 (356)
Q Consensus 159 --~------------------~-~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~ 217 (356)
. . ...+...+...+.+.|++.+.+..+++++++++++++..+++.+......
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~------- 147 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIR------- 147 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEe-------
Confidence 0 0 00112345677888888888656789999999999998776655432221
Q ss_pred cCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 218 HDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 218 ~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
.+ +..++++|.||.|+|.+|..
T Consensus 148 ~~-----~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 148 TN-----SVETVSAAYLIACDGVWSML 169 (400)
T ss_pred CC-----CCcEEecCEEEECCCccHhH
Confidence 00 13578999999999988744
No 132
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.21 E-value=3.6e-10 Score=109.49 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=83.3
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCCccch---------hhh------------------
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQLFS---------AMV------------------ 141 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G--g~~~~~g~~~~---------~~~------------------ 141 (356)
|||+|||||++|+++|++|+++ |.+|+|||+....+ ++.+..+.+.. .+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~ 79 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAGTKL 79 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhCCee
Confidence 6999999999999999999999 99999999976432 22211111000 000
Q ss_pred -c---------c-c----hHHHHHHHhCCCcccc--------------CC-e-E------EEechHHHHHHHHHHHHcCC
Q 018414 142 -V---------R-K----PAHIFLDELGIDYDEQ--------------DN-Y-V------VIKHAALFTSTIMSKLLARP 184 (356)
Q Consensus 142 -~---------~-~----~~~~~l~~~G~~~~~~--------------~~-~-~------~~~~~~~~~~~l~~~~~~~~ 184 (356)
. . . ...+.+.+.|++.... .. + . ...+...+...|.+.+. +.
T Consensus 80 ~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~~~~-~~ 158 (380)
T TIGR01377 80 HRQTGLLLLGPKENQFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQELAE-AH 158 (380)
T ss_pred EeecCeEEEcCCCcHHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHHHHH-Hc
Confidence 0 0 0 0112233344432100 00 0 0 02244566777777665 57
Q ss_pred CcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 185 NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 185 gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
|++++.+++|+++..+++.+. +.+. ..++.++.||+|+|++.
T Consensus 159 g~~~~~~~~V~~i~~~~~~~~-v~~~---------------~~~i~a~~vV~aaG~~~ 200 (380)
T TIGR01377 159 GATVRDGTKVVEIEPTELLVT-VKTT---------------KGSYQANKLVVTAGAWT 200 (380)
T ss_pred CCEEECCCeEEEEEecCCeEE-EEeC---------------CCEEEeCEEEEecCcch
Confidence 999999999999987766553 4442 24689999999999765
No 133
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.21 E-value=1.9e-10 Score=113.98 Aligned_cols=123 Identities=20% Similarity=0.285 Sum_probs=78.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC-CCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~-~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 168 (356)
+|||+|||||++|++||+.|++. |++|+|+||... .||.|++.||++.+.+..... .++.|... ..+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~------~~~~~~~~-----~~~ 70 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKAMYGGTCINIGCIPTKTLLVAAE------KNLSFEQV-----MAT 70 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCcccceeeecCccccchHhhhhhh------cCCCHHHH-----HHH
Confidence 59999999999999999999999 999999999864 699998888888766543211 12222110 000
Q ss_pred hH----HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 169 AA----LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 169 ~~----~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.. .+.....+.+ .+.|++++.++. .. .++..+ .+... ++..++++|+||+|||...
T Consensus 71 ~~~~~~~~~~~~~~~~-~~~gV~~~~g~~-~~--~~~~~v-~v~~~-------------~~~~~~~~d~vViATGs~~ 130 (438)
T PRK07251 71 KNTVTSRLRGKNYAML-AGSGVDLYDAEA-HF--VSNKVI-EVQAG-------------DEKIELTAETIVINTGAVS 130 (438)
T ss_pred HHHHHHHHHHHHHHHH-HhCCCEEEEEEE-EE--ccCCEE-EEeeC-------------CCcEEEEcCEEEEeCCCCC
Confidence 11 1112222233 357899988753 21 233332 22211 0135799999999999765
No 134
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.21 E-value=4.8e-10 Score=109.20 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=81.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcC--CCCeEEEEeccCCCCC--ccccCCccchhhhccchHHHHHHHhCC---------C
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGG--GAWLGGQLFSAMVVRKPAHIFLDELGI---------D 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~--~G~~V~llEk~~~~Gg--~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~ 156 (356)
.+||+|||||++|+++|+.|+++ .|++|+|+||...... ..+.+.. ........+.|+++|+ +
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~----~~l~~~~~~~l~~lgl~~~~~~~~~~ 78 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARA----IALAAGTCQQLARLGVWQALADCATP 78 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccc----eeccHHHHHHHHHCCChhhhHhhcCC
Confidence 58999999999999999999874 2899999999532110 0000000 0000011112222221 1
Q ss_pred ccc-----c---------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeec
Q 018414 157 YDE-----Q---------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSM 216 (356)
Q Consensus 157 ~~~-----~---------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~ 216 (356)
... . ..+....+...+.+.|++.+.+..|++++++++++++..+++.+. +.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~-v~~~~----- 152 (395)
T PRK05732 79 ITHIHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVR-VTLDD----- 152 (395)
T ss_pred ccEEEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEE-EEECC-----
Confidence 000 0 001112234566677777776567899999999999987666554 44321
Q ss_pred ccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 217 NHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 217 ~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
..++++|.||.|+|..+.
T Consensus 153 ---------g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 153 ---------GETLTGRLLVAADGSHSA 170 (395)
T ss_pred ---------CCEEEeCEEEEecCCChh
Confidence 356899999999997764
No 135
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.9e-10 Score=106.72 Aligned_cols=112 Identities=22% Similarity=0.329 Sum_probs=73.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 168 (356)
.|||+||||||+||+||+++++. +++ ++|+|+. .+||.. -.. . ....-..++--..
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~-~~gg~~------~~~--------------~-~venypg~~~~~~ 59 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGG-EPGGQL------TKT--------------T-DVENYPGFPGGIL 59 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecC-CcCCcc------ccc--------------e-eecCCCCCccCCc
Confidence 59999999999999999999999 999 6666665 444211 000 0 0000011222224
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..++.+.+.+.+. +.++++.. ..|..+...++ ...+.+.+ .+++||.||+|||...
T Consensus 60 g~~L~~~~~~~a~-~~~~~~~~-~~v~~v~~~~~-~F~v~t~~---------------~~~~ak~vIiAtG~~~ 115 (305)
T COG0492 60 GPELMEQMKEQAE-KFGVEIVE-DEVEKVELEGG-PFKVKTDK---------------GTYEAKAVIIATGAGA 115 (305)
T ss_pred hHHHHHHHHHHHh-hcCeEEEE-EEEEEEeecCc-eEEEEECC---------------CeEEEeEEEECcCCcc
Confidence 5667777777765 78999888 57777765554 55555532 3499999999999655
No 136
>PRK11445 putative oxidoreductase; Provisional
Probab=99.20 E-value=4.3e-10 Score=108.21 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=83.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC--C-ccccCCccchhhhccchHHHHHHHhCCCccc--------
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--G-GAWLGGQLFSAMVVRKPAHIFLDELGIDYDE-------- 159 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G--g-~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~-------- 159 (356)
|||+|||||++|+++|+.|++. ++|+|+|+.+..+ + ....++. ......+.|+++|+....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~~~~~~~~~~~~g~~------l~~~~~~~L~~lgl~~~~~~~~~~~~ 73 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKHQCGTEGFSKPCGGL------LAPDAQKSFAKDGLTLPKDVIANPQI 73 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCCccccccccCcCcCc------cCHHHHHHHHHcCCCCCcceeecccc
Confidence 7999999999999999999986 8999999987542 1 1111111 122334455555542110
Q ss_pred --------c-------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCC
Q 018414 160 --------Q-------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM 224 (356)
Q Consensus 160 --------~-------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g 224 (356)
. ...+...+...+.+.|.+. . ..|+++++++.++++..+++.+. +.... ++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~-~~gv~v~~~~~v~~i~~~~~~~~-v~~~~-----------~g 139 (351)
T PRK11445 74 FAVKTIDLANSLTRNYQRSYINIDRHKFDLWLKSL-I-PASVEVYHNSLCRKIWREDDGYH-VIFRA-----------DG 139 (351)
T ss_pred ceeeEecccccchhhcCCCcccccHHHHHHHHHHH-H-hcCCEEEcCCEEEEEEEcCCEEE-EEEec-----------CC
Confidence 0 0011123445666666553 3 56899999999999987766543 33210 11
Q ss_pred CCeEEEcCEEEEcCCCCCCC
Q 018414 225 DPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 225 ~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+..+++|+.||+|+|..+..
T Consensus 140 ~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 140 WEQHITARYLVGADGANSMV 159 (351)
T ss_pred cEEEEEeCEEEECCCCCcHH
Confidence 23479999999999987754
No 137
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.20 E-value=1.4e-10 Score=114.90 Aligned_cols=142 Identities=20% Similarity=0.297 Sum_probs=89.3
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc------cCCccch---------hhh------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW------LGGQLFS---------AMV------------ 141 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~------~~g~~~~---------~~~------------ 141 (356)
.++||+|||||+.|+.+|+.++.+ |++|+|+|+++...|++- .+|-.|- ..+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R-Gl~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~APH 89 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRIAPH 89 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC-CCeEEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHhCcc
Confidence 579999999999999999999999 999999999987665541 1111000 000
Q ss_pred ----------ccc-hHHHHH--------HH-hCCC--------------------cccc---CCeEE---EechHHHHHH
Q 018414 142 ----------VRK-PAHIFL--------DE-LGID--------------------YDEQ---DNYVV---IKHAALFTST 175 (356)
Q Consensus 142 ----------~~~-~~~~~l--------~~-~G~~--------------------~~~~---~~~~~---~~~~~~~~~~ 175 (356)
... ..-.|+ +. -|+. +.+. +.+.+ ..+...+.-.
T Consensus 90 ~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRLv~~ 169 (532)
T COG0578 90 LVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARLVAA 169 (532)
T ss_pred ccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHHHHH
Confidence 000 000000 00 0110 0000 01111 1122344444
Q ss_pred HHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 176 l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+...+. +.|.+++..++|+.+..+++ ++||.+.+ .. +|+..+++|+.||.|+|.++
T Consensus 170 ~a~~A~-~~Ga~il~~~~v~~~~re~~-v~gV~~~D------~~---tg~~~~ira~~VVNAaGpW~ 225 (532)
T COG0578 170 NARDAA-EHGAEILTYTRVESLRREGG-VWGVEVED------RE---TGETYEIRARAVVNAAGPWV 225 (532)
T ss_pred HHHHHH-hcccchhhcceeeeeeecCC-EEEEEEEe------cC---CCcEEEEEcCEEEECCCccH
Confidence 444554 67999999999999999988 99999864 22 23568899999999999765
No 138
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.19 E-value=5e-10 Score=109.74 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
..+...|.+.+. +.|++++.+++|+++... ++++.++.+. ..++.++.||+|+|++.+
T Consensus 183 ~~l~~~l~~~a~-~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~---------------~g~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 183 DAVAWGYARGAD-RRGVDIIQNCEVTGFIRRDGGRVIGVETT---------------RGFIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCCcEEEEEeC---------------CceEECCEEEECCChhhH
Confidence 345556666665 679999999999999764 5667777664 246999999999998763
No 139
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.19 E-value=5.6e-10 Score=112.46 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=36.6
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
.+|||+|||||+.|+++|+.|+++ |++|+||||+...+|++
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d~~~GtS 45 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDDLAQGTS 45 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCCCCCCc
Confidence 459999999999999999999999 99999999997655544
No 140
>PRK07538 hypothetical protein; Provisional
Probab=99.19 E-value=5.2e-10 Score=109.94 Aligned_cols=141 Identities=15% Similarity=0.150 Sum_probs=83.9
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchh---hhccchHHHHHHHhCCCcc------cc--
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSA---MVVRKPAHIFLDELGIDYD------EQ-- 160 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~---~~~~~~~~~~l~~~G~~~~------~~-- 160 (356)
||+|||||++|+++|+.|+++ |++|+|+||...+..... +-.+... .+..-...+.+...+++.. ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~~~~g~-gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~ 79 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPELRPLGV-GINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQ 79 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCcccccCc-ceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCC
Confidence 899999999999999999999 999999999875431100 0000000 0000001111222221100 00
Q ss_pred ------------CCeE-EEechHHHHHHHHHHHHcCCC-cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCC
Q 018414 161 ------------DNYV-VIKHAALFTSTIMSKLLARPN-VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDP 226 (356)
Q Consensus 161 ------------~~~~-~~~~~~~~~~~l~~~~~~~~g-v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~ 226 (356)
..++ +..+...+.+.|++.+.+..| .+++++++++++..+++.+. +.+.+ . ..++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~-~~~~~------~---~~g~~ 149 (413)
T PRK07538 80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV-VFLGD------R---AGGDL 149 (413)
T ss_pred EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE-EEEec------c---CCCcc
Confidence 0111 224567788888888765445 57999999999987665432 22211 0 11234
Q ss_pred eEEEcCEEEEcCCCCCCC
Q 018414 227 NVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 227 ~~i~Ak~VI~AtGg~~~~ 244 (356)
.+++||.||.|+|..+..
T Consensus 150 ~~~~adlvIgADG~~S~v 167 (413)
T PRK07538 150 VSVRGDVLIGADGIHSAV 167 (413)
T ss_pred ceEEeeEEEECCCCCHHH
Confidence 689999999999987743
No 141
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.18 E-value=6.8e-10 Score=107.43 Aligned_cols=135 Identities=18% Similarity=0.254 Sum_probs=83.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC--CccccCCcc----------c-----------hh-------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG--GGAWLGGQL----------F-----------SA------- 139 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G--g~~~~~g~~----------~-----------~~------- 139 (356)
+|||+|||||++|+++|++|+++ |++|+||||+...+ +.++....+ + ..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~ 81 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESGE 81 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhCC
Confidence 48999999999999999999999 99999999986432 111110000 0 00
Q ss_pred -hh-------cc-c------hHHHHHHHhCCCcccc--------------CC--eEE------EechHHHHHHHHHHHHc
Q 018414 140 -MV-------VR-K------PAHIFLDELGIDYDEQ--------------DN--YVV------IKHAALFTSTIMSKLLA 182 (356)
Q Consensus 140 -~~-------~~-~------~~~~~l~~~G~~~~~~--------------~~--~~~------~~~~~~~~~~l~~~~~~ 182 (356)
.+ .. . ...+.+.++|++.... .. ... ......+...+.+.+.
T Consensus 82 ~~~~~~G~l~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~~~~~~~- 160 (376)
T PRK11259 82 PLFVRTGVLNLGPADSDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKAHLRLAR- 160 (376)
T ss_pred ccEEEECCEEEcCCCCHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHHHHHHHH-
Confidence 00 00 0 0112233455432110 00 000 1234556666666665
Q ss_pred CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 183 ~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+.|++++++++|+++..+++.+ .+.+. ..++++|.||+|+|++.
T Consensus 161 ~~gv~i~~~~~v~~i~~~~~~~-~v~~~---------------~g~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 161 EAGAELLFNEPVTAIEADGDGV-TVTTA---------------DGTYEAKKLVVSAGAWV 204 (376)
T ss_pred HCCCEEECCCEEEEEEeeCCeE-EEEeC---------------CCEEEeeEEEEecCcch
Confidence 5799999999999998877644 34443 13689999999999775
No 142
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.18 E-value=1.3e-10 Score=116.32 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=86.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCCccchhhhccchHH-H---HHHHhCCCc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRKPAH-I---FLDELGIDY 157 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--------~~Gg~~~~~g~~~~~~~~~~~~~-~---~l~~~G~~~ 157 (356)
+|||+|||+|++|+.+|+.|++. |++|+|||+.. ..||.|.+.||++.+.+...... + ....+|+.+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCccc
Confidence 48999999999999999999999 99999999741 47999999999999987765332 2 234466654
Q ss_pred cc--cCCeEE-EechHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414 158 DE--QDNYVV-IKHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEA 231 (356)
Q Consensus 158 ~~--~~~~~~-~~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~A 231 (356)
.. .-+|.. ..+.......+ ++...+..|++++.+.. . ..+.+.+. |... +++..++++
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a-~--f~~~~~v~-v~~~------------~g~~~~~~~ 144 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA-E--FVDKHRIK-ATNK------------KGKEKIYSA 144 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-E--EcCCCEEE-Eecc------------CCCceEEEe
Confidence 32 112211 11112222221 22334467999988742 1 12333321 2111 112357999
Q ss_pred CEEEEcCCCCC
Q 018414 232 KVVVSSCGHDG 242 (356)
Q Consensus 232 k~VI~AtGg~~ 242 (356)
|+||+|||+..
T Consensus 145 d~lVIATGs~p 155 (484)
T TIGR01438 145 ERFLIATGERP 155 (484)
T ss_pred CEEEEecCCCC
Confidence 99999999765
No 143
>PLN02463 lycopene beta cyclase
Probab=99.18 E-value=5.9e-10 Score=110.28 Aligned_cols=132 Identities=19% Similarity=0.269 Sum_probs=82.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC-ccchhhhccchHHHHHHH-hC---CCccc-----
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG-QLFSAMVVRKPAHIFLDE-LG---IDYDE----- 159 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g-~~~~~~~~~~~~~~~l~~-~G---~~~~~----- 159 (356)
.|||+|||||++|+++|+.|++. |++|+|||+.+... |... +.+...+......+.+.. +. +.++.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~~~~---~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~ 103 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSPLSI---WPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKD 103 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCccch---hccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCcc
Confidence 58999999999999999999999 99999999975321 2110 110000000000011111 10 00000
Q ss_pred -cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414 160 -QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (356)
Q Consensus 160 -~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At 238 (356)
...|. ..+...+.+.|.+++. +.|++++. .+|+++..+++.+ .|.+.+ +.+++|+.||+|+
T Consensus 104 ~~~~y~-~V~R~~L~~~Ll~~~~-~~GV~~~~-~~V~~I~~~~~~~-~V~~~d--------------G~~i~A~lVI~Ad 165 (447)
T PLN02463 104 LDRPYG-RVNRKKLKSKMLERCI-ANGVQFHQ-AKVKKVVHEESKS-LVVCDD--------------GVKIQASLVLDAT 165 (447)
T ss_pred ccCcce-eEEHHHHHHHHHHHHh-hcCCEEEe-eEEEEEEEcCCeE-EEEECC--------------CCEEEcCEEEECc
Confidence 01222 2356778888888886 56999874 5899988776653 454432 3579999999999
Q ss_pred CCCCC
Q 018414 239 GHDGP 243 (356)
Q Consensus 239 Gg~~~ 243 (356)
|..+.
T Consensus 166 G~~s~ 170 (447)
T PLN02463 166 GFSRC 170 (447)
T ss_pred CCCcC
Confidence 98765
No 144
>PRK14727 putative mercuric reductase; Provisional
Probab=99.18 E-value=2.8e-10 Score=114.02 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=50.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP 145 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~ 145 (356)
+|||+|||+|++|+.+|+.|++. |.+|+|+|+...+||.|.+.||++.+.+....
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a 70 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADVIGGCCVNVGCVPSKILIRAA 70 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCcceeEeccccccccHHHHHHH
Confidence 59999999999999999999999 99999999987899999999999988776543
No 145
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.17 E-value=9.2e-10 Score=111.02 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=35.7
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
..|||+|||||+.|+++|+.|+++ |++|+||||++..+|+
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDLASAT 44 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCc
Confidence 359999999999999999999999 9999999998765443
No 146
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.17 E-value=1.7e-10 Score=114.92 Aligned_cols=129 Identities=24% Similarity=0.317 Sum_probs=80.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch----HHHHHHHhCCCcccc-CCeE
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP----AHIFLDELGIDYDEQ-DNYV 164 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~----~~~~l~~~G~~~~~~-~~~~ 164 (356)
+|||+|||||++|+.+|..|++. |++|+|||+ ...||.|.+.||++.+.+.... ..+.+..+|++.... .++.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 80 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL-GKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKIDFK 80 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC-CCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccCHH
Confidence 59999999999999999999999 999999999 5789999889999988766542 223344566543311 1111
Q ss_pred E-EechHHHHH----HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCC
Q 018414 165 V-IKHAALFTS----TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCG 239 (356)
Q Consensus 165 ~-~~~~~~~~~----~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtG 239 (356)
. ..+...... .+.+...+..+++++.+. +..+ +.+.+ .+. ..++++|+||+|||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~--~~~~v---~v~---------------~~~~~~d~lIiATG 139 (460)
T PRK06292 81 KVMARVRRERDRFVGGVVEGLEKKPKIDKIKGT-ARFV--DPNTV---EVN---------------GERIEAKNIVIATG 139 (460)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEE-EEEc--cCCEE---EEC---------------cEEEEeCEEEEeCC
Confidence 0 001111111 111222335678777652 2211 22222 111 35799999999999
Q ss_pred CC
Q 018414 240 HD 241 (356)
Q Consensus 240 g~ 241 (356)
..
T Consensus 140 s~ 141 (460)
T PRK06292 140 SR 141 (460)
T ss_pred CC
Confidence 77
No 147
>PRK06996 hypothetical protein; Provisional
Probab=99.17 E-value=7.1e-10 Score=108.50 Aligned_cols=134 Identities=17% Similarity=0.252 Sum_probs=86.3
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCC----CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC------cc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPN----IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID------YD 158 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G----~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~------~~ 158 (356)
.++||+|||||++|+++|+.|++. | ++|+|+|+....... .............+.|+++|+. +.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~-g~~~g~~v~l~e~~~~~~~~-----~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~ 83 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARR-SATRALSIALIDAREPAASA-----NDPRAIALSHGSRVLLETLGAWPADATPIE 83 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC-CCcCCceEEEecCCCCCcCC-----CCceEEEecHHHHHHHHhCCCchhcCCccc
Confidence 358999999999999999999998 6 579999997532210 0011112233444555555531 00
Q ss_pred c------c--------------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414 159 E------Q--------------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 159 ~------~--------------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~ 218 (356)
. . ..+.+..+...+.+.|++++. +.+++++++++++++..+++.+. +...+
T Consensus 84 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~-~~g~~~~~~~~v~~~~~~~~~v~-v~~~~------- 154 (398)
T PRK06996 84 HIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVR-GTPVRWLTSTTAHAPAQDADGVT-LALGT------- 154 (398)
T ss_pred EEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHH-hCCCEEEcCCeeeeeeecCCeEE-EEECC-------
Confidence 0 0 001123445678888888886 56899999999999977666543 22221
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCC
Q 018414 219 DTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 219 ~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
.+ ...+++||+||.|+|+.
T Consensus 155 ~~----g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 155 PQ----GARTLRARIAVQAEGGL 173 (398)
T ss_pred CC----cceEEeeeEEEECCCCC
Confidence 00 12579999999999964
No 148
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.17 E-value=1.2e-10 Score=115.97 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=83.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-HHHH---HHHhCCCcccc-CCeEE
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-AHIF---LDELGIDYDEQ-DNYVV 165 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~~~~---l~~~G~~~~~~-~~~~~ 165 (356)
|||+|||||++|+.+|+.|++. |++|+|||+ ..+||.|.+.||++.+.+.... ..+. +..+|+..... .+|..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEK 79 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-CCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHH
Confidence 8999999999999999999999 999999999 6789999999998887665432 2222 44456543211 11111
Q ss_pred E-echHHHHH---HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 166 I-KHAALFTS---TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 166 ~-~~~~~~~~---~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
. .+...+.. .-++.+.++.|++++.+.. ..+ +...+ .+...+ ...++++|+||+|||..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~--~~~~~-~v~~~~-------------g~~~~~~d~lVlAtG~~ 142 (461)
T TIGR01350 80 MQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEA-KFL--DPGTV-LVTGEN-------------GEETLTAKNIIIATGSR 142 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEc--cCCEE-EEecCC-------------CcEEEEeCEEEEcCCCC
Confidence 0 01111111 1122334467899988743 222 23332 122110 12579999999999975
Q ss_pred C
Q 018414 242 G 242 (356)
Q Consensus 242 ~ 242 (356)
.
T Consensus 143 p 143 (461)
T TIGR01350 143 P 143 (461)
T ss_pred C
Confidence 4
No 149
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.17 E-value=5.8e-10 Score=109.47 Aligned_cols=58 Identities=29% Similarity=0.413 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
...+...|.+.+. +.|++|+++++|+++..+++++.++.+. ..+++||.||+|+|.++
T Consensus 200 p~~~~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~v~t~---------------~~~~~a~~VV~a~G~~~ 257 (416)
T PRK00711 200 CQLFTQRLAAMAE-QLGVKFRFNTPVDGLLVEGGRITGVQTG---------------GGVITADAYVVALGSYS 257 (416)
T ss_pred HHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCEEEEEEeC---------------CcEEeCCEEEECCCcch
Confidence 3456677777665 6799999999999998888877767653 24689999999999765
No 150
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.17 E-value=9.7e-10 Score=107.85 Aligned_cols=35 Identities=26% Similarity=0.601 Sum_probs=32.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~ 126 (356)
+||+|||||.+|+++|++|++. |.+|+||||+..+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 5999999999999999999999 9999999998744
No 151
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.16 E-value=4.2e-10 Score=111.56 Aligned_cols=124 Identities=21% Similarity=0.262 Sum_probs=77.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 168 (356)
+|||+|||||++|+.+|+.|+++ |++|+|+|+.+ ..||.|++.||++.+.+..... ....|... ..+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~------~~~~~~~~-----~~~ 70 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ------QHTDFVRA-----IQR 70 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCCccceeEeeccccchHHHHHHhc------cCCCHHHH-----HHH
Confidence 59999999999999999999999 99999999976 4788888888887765432210 01111000 001
Q ss_pred hHHHHH----HHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 169 AALFTS----TIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 169 ~~~~~~----~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
...... ..++.+.+..|++++.+ ++..+ +.+.+ .|...+ ...++.+|+||+|||+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i--~~~~~-~v~~~~-------------g~~~~~~d~lviATGs~p 131 (441)
T PRK08010 71 KNEVVNFLRNKNFHNLADMPNIDVIDG-QAEFI--NNHSL-RVHRPE-------------GNLEIHGEKIFINTGAQT 131 (441)
T ss_pred HHHHHHHHHHhHHHHHhhcCCcEEEEE-EEEEe--cCCEE-EEEeCC-------------CeEEEEeCEEEEcCCCcC
Confidence 111111 12334444558998877 34433 23332 232221 124699999999999765
No 152
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.16 E-value=2.6e-11 Score=107.09 Aligned_cols=129 Identities=22% Similarity=0.315 Sum_probs=70.2
Q ss_pred EEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCC----ccch-hhhccchHHHHHHHhCCC----ccccCCe
Q 018414 94 VVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGG----QLFS-AMVVRKPAHIFLDELGID----YDEQDNY 163 (356)
Q Consensus 94 vIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g----~~~~-~~~~~~~~~~~l~~~G~~----~~~~~~~ 163 (356)
+|||||++||++|+.|.++ |.+ |+|||++..+||. |..- .+.. ...........+..+... +.....+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~Gg~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-GIDPVVVLERNDRPGGV-WRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T---EEEEESSSSSTTH-HHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCCCCe-eEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 7999999999999999999 999 9999999888875 3310 0100 000000000000000000 0000111
Q ss_pred EEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 164 VVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 164 ~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
....++.+.| +.+.++.+++++++++|+++..++++ +.+.+.+ ..+++|+.||+|||..+.
T Consensus 79 ---~~~~~v~~yl-~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~--------------~~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 79 ---PSGEEVLDYL-QEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRD--------------GRTIRADRVVLATGHYSH 139 (203)
T ss_dssp ---EBHHHHHHHH-HHHHHHTTGGEETS--EEEEEEETTT-EEEEETT--------------S-EEEEEEEEE---SSCS
T ss_pred ---CCHHHHHHHH-HHHHhhcCcccccCCEEEEEEEeccE-EEEEEEe--------------cceeeeeeEEEeeeccCC
Confidence 2345555554 44445678899999999999999877 4455542 358999999999996553
No 153
>PTZ00367 squalene epoxidase; Provisional
Probab=99.16 E-value=9.7e-10 Score=111.66 Aligned_cols=151 Identities=25% Similarity=0.280 Sum_probs=88.3
Q ss_pred ccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCc--------
Q 018414 86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY-------- 157 (356)
Q Consensus 86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~-------- 157 (356)
....+|||+|||||++|+++|+.|+++ |++|+|+||......... .| ........+.|+++|+.-
T Consensus 29 ~~~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~~~~~~r~-~G-----~~L~p~g~~~L~~LGL~d~l~~i~~~ 101 (567)
T PTZ00367 29 RTNYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDLFSKPDRI-VG-----ELLQPGGVNALKELGMEECAEGIGMP 101 (567)
T ss_pred ccccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEccccccccchh-hh-----hhcCHHHHHHHHHCCChhhHhhcCcc
Confidence 334579999999999999999999999 999999999751110000 00 112233445555555420
Q ss_pred -------cccCCe----------EEEechHHHHHHHHHHH--HcCCCcEEEcCeEEEEEEEeCC----eEEEEEEccee-
Q 018414 158 -------DEQDNY----------VVIKHAALFTSTIMSKL--LARPNVKLFNAVAAEDLIVKGG----RVGGVVTNWAL- 213 (356)
Q Consensus 158 -------~~~~~~----------~~~~~~~~~~~~l~~~~--~~~~gv~i~~~~~v~~i~~~~~----~v~gv~~~~~~- 213 (356)
+..+.. ....+...+.+.|.+.+ ....|++++.. +++++..+++ ++.+|......
T Consensus 102 ~~~~~v~~~~G~~~~i~~~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~-~v~~l~~~~~~~~~~v~gV~~~~~~~ 180 (567)
T PTZ00367 102 CFGYVVFDHKGKQVKLPYGAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEG-TVNSLLEEGPGFSERAYGVEYTEAEK 180 (567)
T ss_pred eeeeEEEECCCCEEEecCCCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEe-EEEEeccccCccCCeeEEEEEecCCc
Confidence 000100 01124456777777766 33578999765 7888876543 36777653210
Q ss_pred e-----ecccC-----CCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 214 V-----SMNHD-----TQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 214 ~-----~~~~~-----~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
. .+..+ +-...+..+++||.||.|+|.+|.+
T Consensus 181 ~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~v 221 (567)
T PTZ00367 181 YDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKF 221 (567)
T ss_pred ccccccccccccccccccccccceEEEeCEEEECCCcchHH
Confidence 0 00000 0000124679999999999977643
No 154
>PRK05868 hypothetical protein; Validated
Probab=99.15 E-value=9.6e-10 Score=106.63 Aligned_cols=130 Identities=21% Similarity=0.263 Sum_probs=80.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc---
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD--- 158 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~--- 158 (356)
.||+|||||++|+++|+.|+++ |++|+|+||.+.+...... + .......+.|+++|+ .+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~g~~---i----~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~ 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPGLRPGGQA---I----DVRGPALDVLERMGLLAAAQEHKTRIRGAS 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCCCCCcee---e----eeCchHHHHHHhcCCHHHHHhhccCccceE
Confidence 3899999999999999999999 9999999998755321110 0 001111222333222 100
Q ss_pred ---ccC-----------------CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414 159 ---EQD-----------------NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 159 ---~~~-----------------~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~ 218 (356)
..+ ......+...+.+.|.+.+ ..|++++++++++++..+++.+. +...+
T Consensus 74 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~--~~~v~i~~~~~v~~i~~~~~~v~-v~~~d------- 143 (372)
T PRK05868 74 FVDRDGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT--QPSVEYLFDDSISTLQDDGDSVR-VTFER------- 143 (372)
T ss_pred EEeCCCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhc--cCCcEEEeCCEEEEEEecCCeEE-EEECC-------
Confidence 000 0011223345555444332 46899999999999987666544 43432
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 219 DTQSCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 219 ~~~~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
..++++|.||.|+|..|.+.
T Consensus 144 -------g~~~~adlvIgADG~~S~vR 163 (372)
T PRK05868 144 -------AAAREFDLVIGADGLHSNVR 163 (372)
T ss_pred -------CCeEEeCEEEECCCCCchHH
Confidence 35689999999999877543
No 155
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.15 E-value=5.8e-10 Score=110.89 Aligned_cols=140 Identities=16% Similarity=0.103 Sum_probs=83.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccc-hhh-------hccchHHHHHH--------Hh
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLF-SAM-------VVRKPAHIFLD--------EL 153 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~-~~~-------~~~~~~~~~l~--------~~ 153 (356)
..+|+|||||++||+||.+|.+. |++|+|+||+..+||......... ... .......+.|. .+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 47999999999999999999999 999999999998887532211100 000 00000011111 11
Q ss_pred -CCCcccc-----CCeEEEechHHHHHHHHHHHHcCCCcE--EEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC
Q 018414 154 -GIDYDEQ-----DNYVVIKHAALFTSTIMSKLLARPNVK--LFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (356)
Q Consensus 154 -G~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~gv~--i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (356)
.+++... ...+.+....++.+.|.+.+. +.|+. ++++++|+.+...++++. |.+.+ .. +.
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~-~fgl~~~I~~~t~V~~V~~~~~~w~-V~~~~------~~----~~ 156 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAR-EFKIEEMVRFETEVVRVEPVDGKWR-VQSKN------SG----GF 156 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHH-HcCCcceEEecCEEEEEeecCCeEE-EEEEc------CC----Cc
Confidence 1222111 011122345667666655554 67877 899999999988766543 33321 00 11
Q ss_pred CeEEEcCEEEEcCCCCC
Q 018414 226 PNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 226 ~~~i~Ak~VI~AtGg~~ 242 (356)
..+..+|.||+|+|.++
T Consensus 157 ~~~~~~d~VIvAtG~~~ 173 (461)
T PLN02172 157 SKDEIFDAVVVCNGHYT 173 (461)
T ss_pred eEEEEcCEEEEeccCCC
Confidence 23567999999999765
No 156
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.15 E-value=2.6e-10 Score=113.80 Aligned_cols=131 Identities=18% Similarity=0.219 Sum_probs=81.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHHHHH--hCCCccc-cCCeEE-
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLDE--LGIDYDE-QDNYVV- 165 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~l~~--~G~~~~~-~~~~~~- 165 (356)
|||+|||||++|+.+|+.|++. |++|+|+||.. .||+|.+.||++.+.+..... .+++.+ +|+.... ..+|..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 78 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGEL 78 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHH
Confidence 7999999999999999999999 99999999975 899999999999888765432 223222 2221110 011111
Q ss_pred EechHHHHHHH----HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 166 IKHAALFTSTI----MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 166 ~~~~~~~~~~l----~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
..+...+...+ ++.+.++.|++++.++. .. .++.. +.+.+ ....+++|+||+|||..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~-~~--~~~~~---v~v~~-------------g~~~~~~~~lIiATGs~ 139 (463)
T TIGR02053 79 LEGKREVVEELRHEKYEDVLSSYGVDYLRGRA-RF--KDPKT---VKVDL-------------GREVRGAKRFLIATGAR 139 (463)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEE-EE--ccCCE---EEEcC-------------CeEEEEeCEEEEcCCCC
Confidence 11112222222 22334467999988743 21 12222 22221 12458899999999975
Q ss_pred C
Q 018414 242 G 242 (356)
Q Consensus 242 ~ 242 (356)
.
T Consensus 140 p 140 (463)
T TIGR02053 140 P 140 (463)
T ss_pred C
Confidence 4
No 157
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.14 E-value=1e-09 Score=107.07 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=81.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC-CccccCCccchhhhccchHHHHHHHhCC---------Ccc-
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG-GGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD- 158 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G-g~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~- 158 (356)
.+||+|||||++|+++|+.|++. |++|+|+||.+... ......+. ......+.|+++|+ +..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~~~~~~~~~a~~------l~~~~~~~L~~lGl~~~l~~~~~~~~~ 74 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSRDYVLGRIRAGV------LEQGTVDLLREAGVDERMDREGLVHEG 74 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCCcccCCceeEee------ECHHHHHHHHHCCChHHHHhcCceecc
Confidence 37999999999999999999999 99999999987421 00000011 11223334444443 111
Q ss_pred ----ccCC------------eEE-EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC
Q 018414 159 ----EQDN------------YVV-IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ 221 (356)
Q Consensus 159 ----~~~~------------~~~-~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~ 221 (356)
.... ... ......+...|++.+. +.|+.++++++++.+...++....|....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~-~~g~~~~~~~~~v~~~~~~~~~~~V~~~~---------- 143 (390)
T TIGR02360 75 TEIAFDGQRFRIDLKALTGGKTVMVYGQTEVTRDLMEARE-AAGLTTVYDADDVRLHDLAGDRPYVTFER---------- 143 (390)
T ss_pred eEEeeCCEEEEEeccccCCCceEEEeCHHHHHHHHHHHHH-hcCCeEEEeeeeEEEEecCCCccEEEEEE----------
Confidence 0000 000 1122455567777765 56889999988887765332222343320
Q ss_pred CCCCCeEEEcCEEEEcCCCCCCCC
Q 018414 222 SCMDPNVMEAKVVVSSCGHDGPFG 245 (356)
Q Consensus 222 ~~g~~~~i~Ak~VI~AtGg~~~~~ 245 (356)
+|+..+++||.||.|+|.+|.+.
T Consensus 144 -~g~~~~i~adlvIGADG~~S~VR 166 (390)
T TIGR02360 144 -DGERHRLDCDFIAGCDGFHGVSR 166 (390)
T ss_pred -CCeEEEEEeCEEEECCCCchhhH
Confidence 11235799999999999887543
No 158
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.14 E-value=4e-10 Score=112.49 Aligned_cols=53 Identities=30% Similarity=0.417 Sum_probs=48.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK 144 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~ 144 (356)
+|||+|||||++|+.||+.|++. |++|+|||++ .+||+|.+.||++.+.+...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~-~~GG~c~~~gciPsk~l~~~ 56 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKK-YWGGVCLNVGCIPSKALLRN 56 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecC-CCCCceecCCccccHHHHhh
Confidence 59999999999999999999999 9999999996 68999999999998776544
No 159
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.13 E-value=7e-10 Score=103.61 Aligned_cols=112 Identities=21% Similarity=0.292 Sum_probs=75.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
|||+|||||++|+++|..|++. |.+|+|+|+.. +||..+.... +..+ ..++......
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~-~gg~~~~~~~--------------~~~~-------~~~~~~~~~~ 57 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME-PGGQLTTTTE--------------VENY-------PGFPEGISGP 57 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC-CCcceeeccc--------------cccc-------CCCCCCCChH
Confidence 6999999999999999999999 99999999885 5543321110 0000 0011011224
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++...+.+.+. +.|+++++ ++|+.+..+++.+. +... +..++++|+||+|+|...
T Consensus 58 ~~~~~l~~~~~-~~gv~~~~-~~v~~v~~~~~~~~-v~~~--------------~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 58 ELMEKMKEQAV-KFGAEIIY-EEVIKVDLSDRPFK-VKTG--------------DGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHH-HcCCeEEE-EEEEEEEecCCeeE-EEeC--------------CCCEEEeCEEEECCCCCc
Confidence 55566666555 56899998 78999887655432 3332 135799999999999765
No 160
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.13 E-value=1.5e-09 Score=112.11 Aligned_cols=140 Identities=21% Similarity=0.224 Sum_probs=82.1
Q ss_pred cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------C---
Q 018414 90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------D--- 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~--- 156 (356)
++||+||||||+||++|+.|++ . |++|+||||.+.+....- +.. ......+.|+++|+ .
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~-Gi~v~IiE~~~~~~~~gr-A~g------l~prtleiL~~lGl~d~l~~~g~~~~~ 103 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFP-DITTRIVERKPGRLELGQ-ADG------IACRTMEMFQAFGFAERILKEAYWINE 103 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCC-CCcEEEEEcCCCCCCCCe-eeE------EChHHHHHHHhccchHHHHhhcccccc
Confidence 6899999999999999999999 7 999999999864321000 000 01111222222221 0
Q ss_pred ---cc-------------------c-cCCe-EEEechHHHHHHHHHHHHcCC-CcEEEcCeEEEEEEEeCC--eEEEEEE
Q 018414 157 ---YD-------------------E-QDNY-VVIKHAALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGG--RVGGVVT 209 (356)
Q Consensus 157 ---~~-------------------~-~~~~-~~~~~~~~~~~~l~~~~~~~~-gv~i~~~~~v~~i~~~~~--~v~gv~~ 209 (356)
|. . ...+ ....+...+.+.|++.+.+.. ++++.++++++++..++. ..+.+.+
T Consensus 104 ~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l 183 (634)
T PRK08294 104 TAFWKPDPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTL 183 (634)
T ss_pred eEEEcCCCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEE
Confidence 00 0 0011 123455667777777776332 368899999999987642 1122333
Q ss_pred cceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 210 NWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 210 ~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.+ .++..+++..+++||+||.|+|++|.
T Consensus 184 ~~------~~~~~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 184 RR------TDGEHEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred EE------CCCCCCCceEEEEeCEEEECCCCchH
Confidence 21 10001123468999999999997763
No 161
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.12 E-value=5.3e-10 Score=108.80 Aligned_cols=131 Identities=17% Similarity=0.233 Sum_probs=81.3
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc-cccCCccchhhhccchHHHHHH-Hh-C-C--Ccccc----C
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAHIFLD-EL-G-I--DYDEQ----D 161 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~-~~~~g~~~~~~~~~~~~~~~l~-~~-G-~--~~~~~----~ 161 (356)
||+|||||++|+++|+.|++. |++|+|||+.+..++. .|. ++...+......+... .+ + . .+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPPIPGNHTYG---VWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLG 76 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCCCcccc---ccHhhhhhhchhhHHhhcCCCceEEecCCcchhcC
Confidence 899999999999999999999 9999999998765543 221 1111000000001111 11 0 0 00000 1
Q ss_pred CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 162 NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
..+...+...+.+.|.+.+. +.|++++.. +++.+..+++....+.+.+ ..+++|+.||+|+|..
T Consensus 77 ~~~~~i~~~~l~~~l~~~~~-~~gv~~~~~-~v~~i~~~~~~~~~v~~~~--------------g~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 77 TAYGSVDSTRLHEELLQKCP-EGGVLWLER-KAIHAEADGVALSTVYCAG--------------GQRIQARLVIDARGFG 140 (388)
T ss_pred CceeEEcHHHHHHHHHHHHH-hcCcEEEcc-EEEEEEecCCceeEEEeCC--------------CCEEEeCEEEECCCCc
Confidence 11223456788888888876 458988754 7888876644444455431 3579999999999987
Q ss_pred C
Q 018414 242 G 242 (356)
Q Consensus 242 ~ 242 (356)
+
T Consensus 141 s 141 (388)
T TIGR01790 141 P 141 (388)
T ss_pred h
Confidence 6
No 162
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.11 E-value=7.9e-10 Score=113.94 Aligned_cols=65 Identities=20% Similarity=0.142 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+...+...|.+.+. +.|++++++++|+++..+ ++++.+|.+.+ ..+ ++..+++||.||+|+|.++
T Consensus 230 dp~rl~~al~~~A~-~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d------~~t---g~~~~i~a~~VVnAaGaws 296 (627)
T PLN02464 230 NDSRLNVALACTAA-LAGAAVLNYAEVVSLIKDESTGRIVGARVRD------NLT---GKEFDVYAKVVVNAAGPFC 296 (627)
T ss_pred cHHHHHHHHHHHHH-hCCcEEEeccEEEEEEEecCCCcEEEEEEEE------CCC---CcEEEEEeCEEEECCCHhH
Confidence 45667777777776 679999999999999887 47788877632 111 1234789999999999875
No 163
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.11 E-value=5.1e-10 Score=112.60 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=47.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCCccchhhhccc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRK 144 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--------~~Gg~~~~~g~~~~~~~~~~ 144 (356)
.|||+|||||++|+.||+.|+++ |++|+|||+.. .+||.|.+.||++.+.+...
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~ 66 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYA 66 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEeccCCCCccccccccceeccccccchHHHHHH
Confidence 49999999999999999999999 99999999731 37999999999998766554
No 164
>PRK06753 hypothetical protein; Provisional
Probab=99.11 E-value=9.5e-10 Score=106.40 Aligned_cols=126 Identities=15% Similarity=0.205 Sum_probs=79.0
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCC---------Ccc----
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGI---------DYD---- 158 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~---------~~~---- 158 (356)
||+|||||++|+++|+.|+++ |++|+|+||.+.+.... .+ ........+.|+.+|+ +..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~g--~g-----i~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~ 73 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNESVKEVG--AG-----IGIGDNVIKKLGNHDLAKGIKNAGQILSTMNL 73 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcccccc--cc-----eeeChHHHHHHHhcChHHHHHhcCCcccceeE
Confidence 799999999999999999999 99999999997553211 01 0011112222222222 110
Q ss_pred --ccCC-----------eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCC
Q 018414 159 --EQDN-----------YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMD 225 (356)
Q Consensus 159 --~~~~-----------~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~ 225 (356)
..+. .....+...+.+.|++.+. +.+++++++++++..+++.+. +... +
T Consensus 74 ~~~~g~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~---~~~i~~~~~v~~i~~~~~~v~-v~~~--------------~ 135 (373)
T PRK06753 74 LDDKGTLLNKVKLKSNTLNVTLHRQTLIDIIKSYVK---EDAIFTGKEVTKIENETDKVT-IHFA--------------D 135 (373)
T ss_pred EcCCCCEEeecccccCCccccccHHHHHHHHHHhCC---CceEEECCEEEEEEecCCcEE-EEEC--------------C
Confidence 0010 0112234556666665542 468999999999987766553 3332 1
Q ss_pred CeEEEcCEEEEcCCCCCC
Q 018414 226 PNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 226 ~~~i~Ak~VI~AtGg~~~ 243 (356)
+.++++|.||.|+|.++.
T Consensus 136 g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 136 GESEAFDLCIGADGIHSK 153 (373)
T ss_pred CCEEecCEEEECCCcchH
Confidence 356899999999997764
No 165
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.11 E-value=1.7e-09 Score=112.48 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+...+...|++.+. + |++++++++|+++..+++.+. +.+. +...++++.||+|+|.++.
T Consensus 406 ~p~~l~~aL~~~a~-~-Gv~i~~~~~V~~i~~~~~~~~-v~t~--------------~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 406 CPAELCRALLALAG-Q-QLTIHFGHEVARLEREDDGWQ-LDFA--------------GGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CHHHHHHHHHHhcc-c-CcEEEeCCEeeEEEEeCCEEE-EEEC--------------CCcEEECCEEEECCCCCcc
Confidence 34567777777775 5 999999999999988777654 4443 1345789999999998763
No 166
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.11 E-value=3.6e-10 Score=116.41 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=50.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc-CCCCCccccCCccchhhhccch
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS-VSPGGGAWLGGQLFSAMVVRKP 145 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~-~~~Gg~~~~~g~~~~~~~~~~~ 145 (356)
.+|||+|||+|++|..+|+.+++. |++|+|||+. ..+||+|.+.||++.+.+....
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a 171 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGDDDSIGGTCVNVGCIPSKALLYAT 171 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCccccceeEeCCcchHHHHHHH
Confidence 369999999999999999999999 9999999975 3689999999999999887764
No 167
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.09 E-value=1e-09 Score=109.30 Aligned_cols=132 Identities=17% Similarity=0.299 Sum_probs=84.2
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH----HHHHHHhCCCcccc---CCeE
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA----HIFLDELGIDYDEQ---DNYV 164 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~----~~~l~~~G~~~~~~---~~~~ 164 (356)
+|+|||+|++|+.+|..|++. |++|+||||+ ..||+|.+.||++.+.+.+... .+....+|+.+... .+|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~-~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 79 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEA-DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWK 79 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECC-cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHH
Confidence 699999999999999999999 9999999997 5899999999999888766432 22334567654311 1121
Q ss_pred EE-echHHHHHHH---HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414 165 VI-KHAALFTSTI---MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 165 ~~-~~~~~~~~~l---~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg 240 (356)
.. .+.......+ .+...++.+++++.+. +..+ ++..+. |...+ ...++++|+||+|||.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-a~~~--~~~~v~-v~~~~-------------~~~~~~~d~lviATGs 142 (458)
T PRK06912 80 QMQARKSQIVTQLVQGIQYLMKKNKIKVIQGK-ASFE--TDHRVR-VEYGD-------------KEEVVDAEQFIIAAGS 142 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEc--cCCEEE-EeeCC-------------CcEEEECCEEEEeCCC
Confidence 11 1111222211 2233346689888774 3222 333332 22211 1257999999999997
Q ss_pred CC
Q 018414 241 DG 242 (356)
Q Consensus 241 ~~ 242 (356)
..
T Consensus 143 ~p 144 (458)
T PRK06912 143 EP 144 (458)
T ss_pred CC
Confidence 64
No 168
>PRK07846 mycothione reductase; Reviewed
Probab=99.09 E-value=4.6e-10 Score=111.59 Aligned_cols=129 Identities=20% Similarity=0.234 Sum_probs=80.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HH---HHHHhCCCccc-cCCeE
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HI---FLDELGIDYDE-QDNYV 164 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~---~l~~~G~~~~~-~~~~~ 164 (356)
+||++|||+|++|..+|..+ . |++|+|+|+. .+||+|.+.||++.+.+..... .+ ...++|+.... .-+|.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~--~-G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--A-DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP 76 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH--C-CCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence 38999999999999988763 6 9999999986 6899999999999998776532 22 23346664321 11121
Q ss_pred E-EechHHHHHHHH----HHH-HcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414 165 V-IKHAALFTSTIM----SKL-LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (356)
Q Consensus 165 ~-~~~~~~~~~~l~----~~~-~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At 238 (356)
. ..+.....+.+. +.. .+..|++++.+.... + ++..| .+. +..++++|+||+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~--~~~~V---~v~--------------~g~~~~~d~lViAT 136 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I--GPKTL---RTG--------------DGEEITADQVVIAA 136 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e--cCCEE---EEC--------------CCCEEEeCEEEEcC
Confidence 1 111112222221 111 335688888874322 2 33332 222 12469999999999
Q ss_pred CCCC
Q 018414 239 GHDG 242 (356)
Q Consensus 239 Gg~~ 242 (356)
|+..
T Consensus 137 Gs~p 140 (451)
T PRK07846 137 GSRP 140 (451)
T ss_pred CCCC
Confidence 9764
No 169
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.08 E-value=2.3e-09 Score=108.33 Aligned_cols=136 Identities=24% Similarity=0.321 Sum_probs=86.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc-cc--CCccchhhhccc------hHHHHHHHhCCCcccc-
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA-WL--GGQLFSAMVVRK------PAHIFLDELGIDYDEQ- 160 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~-~~--~g~~~~~~~~~~------~~~~~l~~~G~~~~~~- 160 (356)
|||+|||+|++|+.+|+.+++. |.+|+|+|+.....|.+ ++ -+......+.+. ......+..++.|...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln 79 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLN 79 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecc
Confidence 6999999999999999999999 99999999975333221 10 011111111110 1112223333333221
Q ss_pred ---CCeEE----EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcC
Q 018414 161 ---DNYVV----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAK 232 (356)
Q Consensus 161 ---~~~~~----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak 232 (356)
..... ..+...+...+.+.+.+..|++++.+ .|+++..+ ++++.+|.+.+ +..++|+
T Consensus 80 ~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~--------------G~~I~Ad 144 (617)
T TIGR00136 80 SSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQD--------------GLKFRAK 144 (617)
T ss_pred cCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECC--------------CCEEECC
Confidence 11111 22345566677777776668999866 78888776 67898998853 3579999
Q ss_pred EEEEcCCCCC
Q 018414 233 VVVSSCGHDG 242 (356)
Q Consensus 233 ~VI~AtGg~~ 242 (356)
.||+|||.+.
T Consensus 145 ~VILATGtfL 154 (617)
T TIGR00136 145 AVIITTGTFL 154 (617)
T ss_pred EEEEccCccc
Confidence 9999999873
No 170
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.08 E-value=3.8e-09 Score=105.75 Aligned_cols=64 Identities=9% Similarity=0.110 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+...+...|.+.+. +.|++++++++|+++..+++ .+. +.+.+ .+ .++..+++|++||+|+|+++
T Consensus 176 dp~~l~~aL~~~a~-~~Gv~i~~~t~V~~i~~~~~~~v~-v~~~~------~~---~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 176 DFGALTKQLLGYLV-QNGTTIRFGHEVRNLKRQSDGSWT-VTVKN------TR---TGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred CHHHHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCCeEE-EEEee------cc---CCceEEEECCEEEECCCcch
Confidence 44677788888876 56999999999999987643 333 33211 00 11234699999999999876
No 171
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.07 E-value=2e-09 Score=106.55 Aligned_cols=137 Identities=20% Similarity=0.264 Sum_probs=79.7
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHh-CCCccccCCeEEE
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDEL-GIDYDEQDNYVVI 166 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~-G~~~~~~~~~~~~ 166 (356)
.++||+|||||++|+++|++|.+. |.. ++|+||+..+||+-|.. .+..+..+.+ .++..+ +.+|.....|+..
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~Gg~W~~~--ry~~l~~~~p--~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDVGGTWRYN--RYPGLRLDSP--KWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCcCCcchhc--cCCceEECCc--hheeccCCCccCCcccCCCc
Confidence 368999999999999999999999 888 99999999888763321 1111111111 111111 1223212233333
Q ss_pred echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
....++....+++.... .++.+++.|+.+..++ +....|.+..+ ...++.+|.||+|||.++..
T Consensus 82 ~~~~~y~~~~~~~y~~~--~~i~~~~~v~~~~~~~~~~~w~V~~~~~------------~~~~~~a~~vV~ATG~~~~P 146 (443)
T COG2072 82 AEIKDYIKDYLEKYGLR--FQIRFNTRVEVADWDEDTKRWTVTTSDG------------GTGELTADFVVVATGHLSEP 146 (443)
T ss_pred ccHHHHHHHHHHHcCce--eEEEcccceEEEEecCCCCeEEEEEcCC------------CeeeEecCEEEEeecCCCCC
Confidence 33344444444444333 3445555555555543 34555665421 11227899999999987643
No 172
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.06 E-value=9.4e-10 Score=100.92 Aligned_cols=140 Identities=22% Similarity=0.297 Sum_probs=92.3
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc------cCCc--------------c---------------
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW------LGGQ--------------L--------------- 136 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~------~~g~--------------~--------------- 136 (356)
.|||||+|.|||+++..+-.. +-.|+++||...+||.+. ++.+ +
T Consensus 11 pvvVIGgGLAGLsasn~iin~-gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~~ 89 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK-GGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGVP 89 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc-CCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCcH
Confidence 699999999999999999988 667999999998887653 1111 0
Q ss_pred --chhhhcc-chHHHHHHH-hCCCcccc---CC--eEE-------EechHHHHHHHHH----HHHcCC-CcEEEcCeEEE
Q 018414 137 --FSAMVVR-KPAHIFLDE-LGIDYDEQ---DN--YVV-------IKHAALFTSTIMS----KLLARP-NVKLFNAVAAE 195 (356)
Q Consensus 137 --~~~~~~~-~~~~~~l~~-~G~~~~~~---~~--~~~-------~~~~~~~~~~l~~----~~~~~~-gv~i~~~~~v~ 195 (356)
...+..+ ...++||.. +++..+.. .. .+. .....++...|.. ....++ -++|..+++|+
T Consensus 90 eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskvv 169 (477)
T KOG2404|consen 90 ELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKVV 169 (477)
T ss_pred HHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhcceee
Confidence 0011111 145788875 66654321 00 000 0011233333333 333232 38899999999
Q ss_pred EEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 196 DLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 196 ~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+|..++|+|.||...+ .+|+...+.++.||+||||++
T Consensus 170 ~il~n~gkVsgVeymd----------~sgek~~~~~~~VVlatGGf~ 206 (477)
T KOG2404|consen 170 DILRNNGKVSGVEYMD----------ASGEKSKIIGDAVVLATGGFG 206 (477)
T ss_pred eeecCCCeEEEEEEEc----------CCCCccceecCceEEecCCcC
Confidence 9999999999998753 133457788999999999987
No 173
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.05 E-value=4.7e-09 Score=105.05 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHHcC---CC--cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 168 HAALFTSTIMSKLLAR---PN--VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~---~g--v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+...+...+.+.+.+. .| ++++++++|++|..+++.++.|.+. ..+++|+.||+|+|+++
T Consensus 209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~---------------~G~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTN---------------RGEIRARFVVVSACGYS 273 (497)
T ss_pred CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEEC---------------CCEEEeCEEEECcChhH
Confidence 3456777777777630 46 8899999999999876666666653 24699999999999876
No 174
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.04 E-value=1.7e-09 Score=108.08 Aligned_cols=135 Identities=21% Similarity=0.309 Sum_probs=86.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccch-H---HHHHHHhCCCccc----cCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKP-A---HIFLDELGIDYDE----QDN 162 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~-~---~~~l~~~G~~~~~----~~~ 162 (356)
.||+|||+|++|+.+|..|++. |.+|+|+||. ..||.|.+.||++.+.+.... . .+....+|+.... .-+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~-~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQL-GADVTVIERD-GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVD 79 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEEcc-CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccC
Confidence 3899999999999999999999 9999999997 489999999999988766542 2 2334456765421 111
Q ss_pred eEEE-echHHH----HHHHHHHHHcCCCcEEEcCeEEEEEE--EeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEE
Q 018414 163 YVVI-KHAALF----TSTIMSKLLARPNVKLFNAVAAEDLI--VKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVV 235 (356)
Q Consensus 163 ~~~~-~~~~~~----~~~l~~~~~~~~gv~i~~~~~v~~i~--~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI 235 (356)
|... .+...+ ...+.+.+. +.|++++.++ ++.+. .+++.+. |...+ ++..++.+|+||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~-~~gV~~~~g~-~~~~~~~~~~~~v~-V~~~~------------g~~~~~~~d~lV 144 (466)
T PRK07845 80 LPAVNARVKALAAAQSADIRARLE-REGVRVIAGR-GRLIDPGLGPHRVK-VTTAD------------GGEETLDADVVL 144 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEE-EEEeecccCCCEEE-EEeCC------------CceEEEecCEEE
Confidence 2111 111122 222233333 5699999884 43332 2333332 32211 112479999999
Q ss_pred EcCCCCC
Q 018414 236 SSCGHDG 242 (356)
Q Consensus 236 ~AtGg~~ 242 (356)
+|||...
T Consensus 145 iATGs~p 151 (466)
T PRK07845 145 IATGASP 151 (466)
T ss_pred EcCCCCC
Confidence 9999765
No 175
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.03 E-value=1.9e-09 Score=104.68 Aligned_cols=128 Identities=23% Similarity=0.325 Sum_probs=80.2
Q ss_pred cEEEECCCHHHHHHHHHh--hcCCCCeEEEEeccCCCC--C-ccccCCccchhhhccchHHHHHHHhC-----CCcccc-
Q 018414 92 DVVVVGAGSAGLSCAYEL--SKNPNIQIAIIEQSVSPG--G-GAWLGGQLFSAMVVRKPAHIFLDELG-----IDYDEQ- 160 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~L--a~~~G~~V~llEk~~~~G--g-~~~~~g~~~~~~~~~~~~~~~l~~~G-----~~~~~~- 160 (356)
||||||||+||+++|++| ++. |.+|+|||+....+ . .+|. ....-. ...+.+.... +.+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW~---~~~~~~---~~~~~~v~~~w~~~~v~~~~~~ 73 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTWC---FWEKDL---GPLDSLVSHRWSGWRVYFPDGS 73 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCcccc---cccccc---cchHHHHheecCceEEEeCCCc
Confidence 899999999999999999 777 99999999987652 1 1221 110000 0011111111 111111
Q ss_pred ---CC-eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414 161 ---DN-YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236 (356)
Q Consensus 161 ---~~-~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~ 236 (356)
.. -+...+...+.+.+.+++. ..+ .++.++.|+++...++.+ .+.+. ++.+++|+.||+
T Consensus 74 ~~~~~~~Y~~i~~~~f~~~l~~~~~-~~~-~~~~~~~V~~i~~~~~~~-~v~~~--------------~g~~i~a~~VvD 136 (374)
T PF05834_consen 74 RILIDYPYCMIDRADFYEFLLERAA-AGG-VIRLNARVTSIEETGDGV-LVVLA--------------DGRTIRARVVVD 136 (374)
T ss_pred eEEcccceEEEEHHHHHHHHHHHhh-hCC-eEEEccEEEEEEecCceE-EEEEC--------------CCCEEEeeEEEE
Confidence 11 1224567888888888886 545 456677999998776633 33343 236899999999
Q ss_pred cCCCCCC
Q 018414 237 SCGHDGP 243 (356)
Q Consensus 237 AtGg~~~ 243 (356)
|+|..+.
T Consensus 137 a~g~~~~ 143 (374)
T PF05834_consen 137 ARGPSSP 143 (374)
T ss_pred CCCcccc
Confidence 9996544
No 176
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.03 E-value=7.2e-10 Score=110.26 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=79.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HH---HHHHhCCCccc-cCCeE
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HI---FLDELGIDYDE-QDNYV 164 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~---~l~~~G~~~~~-~~~~~ 164 (356)
+|||+|||+|++|..+|.. .. |++|+|||+. .+||+|.+.||++.+.+..... .+ ...++|+.... .-+|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~-g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 77 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FA-DKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWP 77 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HC-CCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHH
Confidence 5999999999999998654 46 9999999986 6899999999999998876532 22 33345654221 11121
Q ss_pred EEec-hHH-HHHHHH----HHHH--cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414 165 VIKH-AAL-FTSTIM----SKLL--ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236 (356)
Q Consensus 165 ~~~~-~~~-~~~~l~----~~~~--~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~ 236 (356)
.... ... ..+.+. .... ++.|++++.++.+.. +...| .+. +..++++|+||+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~---~~~~V---~~~--------------~g~~~~~d~lIi 137 (452)
T TIGR03452 78 DIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFV---GPRTL---RTG--------------DGEEITGDQIVI 137 (452)
T ss_pred HHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEe---cCCEE---EEC--------------CCcEEEeCEEEE
Confidence 1111 011 111111 1111 236899998864332 33322 222 124689999999
Q ss_pred cCCCCC
Q 018414 237 SCGHDG 242 (356)
Q Consensus 237 AtGg~~ 242 (356)
|||...
T Consensus 138 ATGs~p 143 (452)
T TIGR03452 138 AAGSRP 143 (452)
T ss_pred EECCCC
Confidence 999765
No 177
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=1.2e-09 Score=106.93 Aligned_cols=135 Identities=28% Similarity=0.380 Sum_probs=90.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccC--Cccchhhhccc------hHHHHHHHhCCCcccc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLG--GQLFSAMVVRK------PAHIFLDELGIDYDEQ 160 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~--g~~~~~~~~~~------~~~~~l~~~G~~~~~~ 160 (356)
.|||+|||||.||+.||+++++. |.+++|+-.+. .+|--.|+. |++-...+.+. ..-...++.++.|...
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CCceEEECCCccchHHHHhhhcc-CCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhc
Confidence 49999999999999999999999 99999998763 233222221 11111112111 1224455667776432
Q ss_pred ---CCeEE-----EechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEc
Q 018414 161 ---DNYVV-----IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEA 231 (356)
Q Consensus 161 ---~~~~~-----~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~A 231 (356)
....+ ......|...+.+.+.+..|+.++.+ .|++++.+++ +|.||.+.. +..|.|
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~--------------G~~~~a 147 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTAD--------------GPEFHA 147 (621)
T ss_pred cCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCC--------------CCeeec
Confidence 11111 11223455566666777889999888 7999998777 699999864 478999
Q ss_pred CEEEEcCCC
Q 018414 232 KVVVSSCGH 240 (356)
Q Consensus 232 k~VI~AtGg 240 (356)
+.||++||-
T Consensus 148 ~aVVlTTGT 156 (621)
T COG0445 148 KAVVLTTGT 156 (621)
T ss_pred CEEEEeecc
Confidence 999999994
No 178
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.00 E-value=4.9e-09 Score=106.07 Aligned_cols=114 Identities=23% Similarity=0.302 Sum_probs=78.1
Q ss_pred CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK 167 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~ 167 (356)
...|||+|||||++|++||.+|++. |++|+|+++. +||..... .+++ ....++ ..
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~-G~~v~li~~~--~GG~~~~~-------------------~~~~--~~~~~~-~~ 263 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK-GIRTGIVAER--FGGQVLDT-------------------MGIE--NFISVP-ET 263 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecC--CCCeeecc-------------------Cccc--ccCCCC-CC
Confidence 3469999999999999999999999 9999999864 55533110 0000 000000 12
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
...++.+.+.+.+. +.|++++++++|+++..+++.+ .+.+. +..+++++.||+|||...
T Consensus 264 ~~~~l~~~l~~~~~-~~gv~i~~~~~V~~I~~~~~~~-~V~~~--------------~g~~i~a~~vViAtG~~~ 322 (517)
T PRK15317 264 EGPKLAAALEEHVK-EYDVDIMNLQRASKLEPAAGLI-EVELA--------------NGAVLKAKTVILATGARW 322 (517)
T ss_pred CHHHHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCeE-EEEEC--------------CCCEEEcCEEEECCCCCc
Confidence 34566677776665 5689999999999998765433 33332 135699999999999754
No 179
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.98 E-value=1.3e-08 Score=102.02 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=33.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP 126 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~ 126 (356)
++||+|||||+.|+++|++|++. ++.+|+||||...+
T Consensus 5 ~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred cceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 58999999999999999999983 48999999998654
No 180
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.98 E-value=5.9e-09 Score=97.65 Aligned_cols=60 Identities=30% Similarity=0.448 Sum_probs=42.7
Q ss_pred HHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 175 TIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 175 ~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.++..+.++.|++|+.++.|++|+.+ ++++.+|.+.+. ++. .....+.+|.||+|.|+.+
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~------~~~--~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDN------DGG--VQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEET------TTS--EEEEEEEEEEEEE-SHHHH
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeec------CCc--ceeeeccceeEEeccCCCC
Confidence 34445555679999999999999886 679999988641 110 0135678899999999654
No 181
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=4.2e-09 Score=97.28 Aligned_cols=71 Identities=28% Similarity=0.387 Sum_probs=58.1
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC--------CCCCccccCCccchhhhccch----HHHHHHHhCCC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV--------SPGGGAWLGGQLFSAMVVRKP----AHIFLDELGID 156 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~--------~~Gg~~~~~g~~~~~~~~~~~----~~~~l~~~G~~ 156 (356)
.+||.||||||.+||+||-+++.. |.+|.++|--. .+||+|.+.||++.+++.+.. .++....+|+.
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence 479999999999999999999999 99999999521 247888899999999887763 45566678887
Q ss_pred cccc
Q 018414 157 YDEQ 160 (356)
Q Consensus 157 ~~~~ 160 (356)
.++.
T Consensus 97 ~~e~ 100 (503)
T KOG4716|consen 97 VDEQ 100 (503)
T ss_pred Cccc
Confidence 7653
No 182
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.96 E-value=8.1e-09 Score=104.41 Aligned_cols=114 Identities=18% Similarity=0.288 Sum_probs=76.8
Q ss_pred CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK 167 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~ 167 (356)
...|||+|||||++|++||+.|++. |++|+|+|. .+||.....-.+ + .-.+.+ ..
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~-G~~v~li~~--~~GG~~~~~~~~-----------~--~~~~~~---------~~ 264 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK-GLRTAMVAE--RIGGQVKDTVGI-----------E--NLISVP---------YT 264 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec--CCCCccccCcCc-----------c--cccccC---------CC
Confidence 3469999999999999999999999 999999985 355532210000 0 000110 01
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
....+...+.+.+. +.|++++.+++|+++..+++.+ .+.+. +...+.+|.+|+|||...
T Consensus 265 ~~~~l~~~l~~~l~-~~gv~i~~~~~V~~I~~~~~~~-~v~~~--------------~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 265 TGSQLAANLEEHIK-QYPIDLMENQRAKKIETEDGLI-VVTLE--------------SGEVLKAKSVIVATGARW 323 (515)
T ss_pred CHHHHHHHHHHHHH-HhCCeEEcCCEEEEEEecCCeE-EEEEC--------------CCCEEEeCEEEECCCCCc
Confidence 23556666666665 5699999999999997765433 23332 135799999999999754
No 183
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.95 E-value=8.1e-09 Score=105.29 Aligned_cols=111 Identities=17% Similarity=0.260 Sum_probs=72.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
.|||+|||||+||++||+.|++. |++|+|+|+. ..||.+.....+.. .+ .+. ....
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~-~~GG~~~~~~~i~~----------------~p-----g~~-~~~~ 59 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKD-DFGGQITITSEVVN----------------YP-----GIL-NTTG 59 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecC-CCCceEEecccccc----------------CC-----CCc-CCCH
Confidence 49999999999999999999999 9999999996 46654332111000 00 000 0122
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..+...+.+.+. +.|++++ +++|+.+..+++ ...+... ...+.++.||+|||+..
T Consensus 60 ~~l~~~l~~~~~-~~gv~~~-~~~V~~i~~~~~-~~~V~~~---------------~g~~~a~~lVlATGa~p 114 (555)
T TIGR03143 60 PELMQEMRQQAQ-DFGVKFL-QAEVLDVDFDGD-IKTIKTA---------------RGDYKTLAVLIATGASP 114 (555)
T ss_pred HHHHHHHHHHHH-HcCCEEe-ccEEEEEEecCC-EEEEEec---------------CCEEEEeEEEECCCCcc
Confidence 455555555554 5689986 557888776543 3334332 13588999999999865
No 184
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.95 E-value=1.5e-08 Score=101.99 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
.+.+.|.+.+. +.|++|+++++|++|..+++++.+|.+.+ ..+++|+.||+|+|..
T Consensus 230 ~l~~~L~~~~~-~~G~~i~~~~~V~~I~~~~~~~~gv~~~~--------------g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 230 QIAESLVKGLE-KHGGQIRYRARVTKIILENGKAVGVKLAD--------------GEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHH-HCCCEEEeCCeeeEEEecCCcEEEEEeCC--------------CCEEEcCEEEECCChH
Confidence 45566666665 67999999999999998888888888752 3578999999999964
No 185
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.94 E-value=1.5e-08 Score=99.55 Aligned_cols=126 Identities=19% Similarity=0.300 Sum_probs=77.2
Q ss_pred cEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCC--------------
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGID-------------- 156 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~-------------- 156 (356)
+|+|||||++||++|+.|+++ | ++|+|+||.+.++.. +.. +.......+.|+++|+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~~~~~---G~g----i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 73 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPAFGEV---GAG----VSFGANAVRAIVGLGLGEAYTQVADSTPAPW 73 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCcCCCC---ccc----eeeCccHHHHHHHcCChhHHHHHhcCCCccC
Confidence 699999999999999999998 7 699999998765321 000 01111222233333321
Q ss_pred ----cc--c--cCCeE----------EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeeccc
Q 018414 157 ----YD--E--QDNYV----------VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNH 218 (356)
Q Consensus 157 ----~~--~--~~~~~----------~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~ 218 (356)
+. . ...+. ...+...+.+.|++.+ .+..++++++|+++..+++.+. +...+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~---~~~~v~~~~~v~~i~~~~~~~~-v~~~~------- 142 (414)
T TIGR03219 74 QDIWFEWRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHL---PEGIASFGKRATQIEEQAEEVQ-VLFTD------- 142 (414)
T ss_pred cceeEEEEecCccceeeeeccccCCcccCCHHHHHHHHHHhC---CCceEEcCCEEEEEEecCCcEE-EEEcC-------
Confidence 00 0 00000 0123445666666554 2456889999999987766543 33321
Q ss_pred CCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 219 DTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 219 ~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
..++++|.||+|+|.++.
T Consensus 143 -------g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 143 -------GTEYRCDLLIGADGIKSA 160 (414)
T ss_pred -------CCEEEeeEEEECCCccHH
Confidence 356899999999997764
No 186
>PRK10262 thioredoxin reductase; Provisional
Probab=98.94 E-value=1.2e-08 Score=96.84 Aligned_cols=115 Identities=11% Similarity=0.155 Sum_probs=71.0
Q ss_pred cCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEE
Q 018414 87 TYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI 166 (356)
Q Consensus 87 ~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~ 166 (356)
+..++||+|||||++|++||+.|+++ |++|+++|+. ..||.+...... ++++. ....
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~-~~gg~~~~~~~~----------------~~~~~-----~~~~ 59 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM-EKGGQLTTTTEV----------------ENWPG-----DPND 59 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEee-cCCCceecCceE----------------CCCCC-----CCCC
Confidence 34579999999999999999999999 9999999965 455533211100 01110 0001
Q ss_pred echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.....+.+.+.+... +.+++++.+ .++.+...++.+. +... ...+.+|.||+|||...
T Consensus 60 ~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~v~~~~~~~~-v~~~---------------~~~~~~d~vilAtG~~~ 117 (321)
T PRK10262 60 LTGPLLMERMHEHAT-KFETEIIFD-HINKVDLQNRPFR-LTGD---------------SGEYTCDALIIATGASA 117 (321)
T ss_pred CCHHHHHHHHHHHHH-HCCCEEEee-EEEEEEecCCeEE-EEec---------------CCEEEECEEEECCCCCC
Confidence 122344455444443 456677666 5666666555332 2211 23589999999999764
No 187
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.93 E-value=2.7e-08 Score=91.96 Aligned_cols=151 Identities=26% Similarity=0.342 Sum_probs=91.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC--CCCc-cccCCccch----------------------------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS--PGGG-AWLGGQLFS---------------------------- 138 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~--~Gg~-~~~~g~~~~---------------------------- 138 (356)
++||||||+|.+||.+|.+|+.. |++|+|+|+... +||. .|.-|.++-
T Consensus 5 ~~dvivvgaglaglvaa~elA~a-G~~V~ildQEgeqnlGGQAfWSfGGLF~vdSPEQRRlgirDsldLArqDW~gtA~F 83 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRLGIRDSLDLARQDWFGTAAF 83 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhc-CceEEEEcccccccccceeeeecccEEEecCHHHhhcccchhHHHHHHhhhccccc
Confidence 58999999999999999999999 999999998753 3433 343222110
Q ss_pred -------------hhhc--cchHHHHHHHhCCCcccc------------------CCeEEE-ec----hHHHHHHHHHHH
Q 018414 139 -------------AMVV--RKPAHIFLDELGIDYDEQ------------------DNYVVI-KH----AALFTSTIMSKL 180 (356)
Q Consensus 139 -------------~~~~--~~~~~~~l~~~G~~~~~~------------------~~~~~~-~~----~~~~~~~l~~~~ 180 (356)
.++. ..+...||...|+.|-.. +.|.+. .. -..|.+.+.+..
T Consensus 84 DRPEDhWPr~WAeAYl~FAAGEkR~WL~~~GmrwFPvVGWAERGG~~A~ghGNSVPRFHiTWGTGPgvl~pFvr~~re~~ 163 (552)
T COG3573 84 DRPEDHWPRQWAEAYLDFAAGEKRSWLHRRGMRWFPVVGWAERGGSDAQGHGNSVPRFHITWGTGPGVLEPFVRRLREAQ 163 (552)
T ss_pred CCccccchHHHHHHHHhhhccchhHHHHHcCCeeeeeccchhhCCcccCCCCCCCcceEEeecCCcchhhHHHHHHHHHH
Confidence 0000 012235666666543211 011111 11 134555554444
Q ss_pred HcCCCcEEEcCeEEEEEEEeCCeEEEEEEc---ceeeecccCCCC-CCCCeEEEcCEEEEcCCCCC
Q 018414 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTN---WALVSMNHDTQS-CMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 181 ~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~---~~~~~~~~~~~~-~g~~~~i~Ak~VI~AtGg~~ 242 (356)
. ..-++|.+.++|..+...+++|+||.-. ...+...+.... -....+++|..||+++|+.+
T Consensus 164 ~-~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~aviv~SGGIG 228 (552)
T COG3573 164 R-RGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSASAVIVASGGIG 228 (552)
T ss_pred h-CCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceEEeeeeEEEecCCcC
Confidence 3 6679999999999999999999988642 100111111100 00125789999999999987
No 188
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.93 E-value=2e-08 Score=100.41 Aligned_cols=39 Identities=33% Similarity=0.496 Sum_probs=33.6
Q ss_pred CcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPG 127 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~G 127 (356)
..+||||||||++|+++|+.|++. |+.+|+|+||.+.++
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 358999999999999999999984 689999999944443
No 189
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.91 E-value=1.4e-08 Score=98.53 Aligned_cols=37 Identities=35% Similarity=0.677 Sum_probs=34.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G 127 (356)
++||+|||||++|+++|++|+++ |.+|+++|+....+
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~~ 40 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGG 40 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccCC
Confidence 58999999999999999999999 99999999987554
No 190
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.91 E-value=3.7e-08 Score=101.19 Aligned_cols=133 Identities=19% Similarity=0.247 Sum_probs=78.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC-CCCccccCCccchhhhccchHHHHHHHhCC------------
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS-PGGGAWLGGQLFSAMVVRKPAHIFLDELGI------------ 155 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~-~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~------------ 155 (356)
+.++|+|||||++|+++|+.|+++ |++|+|+||... ..+..+.++. +.......+.|+++|+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~~~~r~~G~~~~~----I~L~pngl~aLe~LGl~~~e~l~~~g~~ 154 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDLSAIRGEGKYRGP----IQIQSNALAALEAIDIDVAEQVMEAGCI 154 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccccccccccccCcc----cccCHHHHHHHHHcCcchHHHHHhhcCc
Confidence 458999999999999999999999 999999999752 1111110000 0111111112222111
Q ss_pred ------------------Cccc-----cC--CeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEc
Q 018414 156 ------------------DYDE-----QD--NYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 210 (356)
Q Consensus 156 ------------------~~~~-----~~--~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~ 210 (356)
.++. .. .+....+...+.+.|.+.+. ...++++++|+++..+++.+. +...
T Consensus 155 ~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg---~~~i~~g~~V~~I~~~~d~Vt-V~~~ 230 (668)
T PLN02927 155 TGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVG---EDVIRNESNVVDFEDSGDKVT-VVLE 230 (668)
T ss_pred ccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCC---CCEEEcCCEEEEEEEeCCEEE-EEEC
Confidence 0000 00 11123344556666654431 123678899999988777765 4443
Q ss_pred ceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 211 WALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 211 ~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+ ..++++|.||.|+|.++..
T Consensus 231 d--------------G~ti~aDlVVGADG~~S~v 250 (668)
T PLN02927 231 N--------------GQRYEGDLLVGADGIWSKV 250 (668)
T ss_pred C--------------CCEEEcCEEEECCCCCcHH
Confidence 2 3568999999999988743
No 191
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=1.9e-08 Score=101.04 Aligned_cols=40 Identities=38% Similarity=0.612 Sum_probs=37.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
.+||||||||..||+||..|+++ |++|+|+||+..+||.+
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~GG~a 42 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVGGRA 42 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCCcce
Confidence 48999999999999999999999 99999999999888754
No 192
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.90 E-value=1.9e-08 Score=101.00 Aligned_cols=41 Identities=32% Similarity=0.568 Sum_probs=36.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcC---CCCeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~---~G~~V~llEk~~~~Gg~~ 130 (356)
+.+++|||||++||+||+.|++. +|.+|+|+|+...+||..
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 36899999999999999999985 378999999999988764
No 193
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.89 E-value=1.4e-07 Score=92.65 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+.+.|.+.+. +.|++++.+++|+++..+++++..+...+ ++...+++|.||+|+|.+..
T Consensus 261 L~~aL~~~l~-~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~------------g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 261 LQNALRRAFE-RLGGRIMPGDEVLGAEFEGGRVTAVWTRN------------HGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred HHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCEEEEEEeeC------------CceEEEECCEEEEeCCCccc
Confidence 3455555554 67999999999999998887776655321 12467999999999998753
No 194
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=2.4e-08 Score=102.09 Aligned_cols=131 Identities=16% Similarity=0.232 Sum_probs=90.1
Q ss_pred HHHHHHhhcCCCCeEEEEeccCCCCCcc-ccCCcc--------c--------hhh---------------hcc--chHHH
Q 018414 103 LSCAYELSKNPNIQIAIIEQSVSPGGGA-WLGGQL--------F--------SAM---------------VVR--KPAHI 148 (356)
Q Consensus 103 l~aA~~La~~~G~~V~llEk~~~~Gg~~-~~~g~~--------~--------~~~---------------~~~--~~~~~ 148 (356)
|+||+++++. |.+|+||||....++++ +.+|.+ . ... +.+ ...++
T Consensus 1 l~AAl~aa~~-G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~ 79 (570)
T PRK05675 1 MRAALQLAQG-GHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVF 79 (570)
T ss_pred ChhHHhHHhc-CCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 4789999999 99999999997655543 222111 0 000 011 13578
Q ss_pred HHHHhCCCccccCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CC
Q 018414 149 FLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GG 202 (356)
Q Consensus 149 ~l~~~G~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~ 202 (356)
||+++|++|+...+ +. ... ....+...|++.+. +.|++++.++.+++|+.+ ++
T Consensus 80 ~L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~~~~g 158 (570)
T PRK05675 80 ELEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNL-KNGTTFLNEWYAVDLVKNQDG 158 (570)
T ss_pred HHHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHh-ccCCEEEECcEEEEEEEcCCC
Confidence 99999999976321 10 111 23567788888776 679999999999999985 68
Q ss_pred eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 203 RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 203 ~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
+|.|+...+ .. +++...+.||.||+||||++..
T Consensus 159 ~v~Gv~~~~------~~---~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 159 AVVGVIAIC------IE---TGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred eEEEEEEEE------cC---CCcEEEEecCeEEECCCCcccc
Confidence 999998732 11 2245689999999999998854
No 195
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.86 E-value=3.5e-08 Score=106.84 Aligned_cols=125 Identities=25% Similarity=0.292 Sum_probs=77.1
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 168 (356)
.++||+|||||+||++||+.|++. |++|+|+|+...+||..+.... .++ -..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~GG~~~~~~~--------------------~~~-------g~~ 213 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEAGGSLLSEAE--------------------TID-------GKP 213 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCCCCeeecccc--------------------ccC-------Ccc
Confidence 358999999999999999999999 9999999999887764432110 000 012
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..++...+.+++.+..+++++.++.|..+.. ++.+..+.....................++++.||+|||+..
T Consensus 214 ~~~~~~~~~~~l~~~~~v~v~~~t~V~~i~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~ 286 (985)
T TIGR01372 214 AADWAAATVAELTAMPEVTLLPRTTAFGYYD-HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE 286 (985)
T ss_pred HHHHHHHHHHHHhcCCCcEEEcCCEEEEEec-CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC
Confidence 2445555666666555799999999988743 233322211100000000000001123689999999999754
No 196
>PRK09897 hypothetical protein; Provisional
Probab=98.85 E-value=6e-08 Score=97.81 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=81.9
Q ss_pred ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCcc-ccCCccchhhhc----------cchHHHHHHH------
Q 018414 91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGA-WLGGQLFSAMVV----------RKPAHIFLDE------ 152 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~-~~~g~~~~~~~~----------~~~~~~~l~~------ 152 (356)
.+|+|||||++|+++|.+|.+. ..++|+|+|++..+|.+. |....-...++. .....+|+..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 4799999999999999999874 146899999988787443 433211111111 1123345433
Q ss_pred --hCCCcccc--CCeEEEechHHHH----HHHHHHHHcCCC--cEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCC
Q 018414 153 --LGIDYDEQ--DNYVVIKHAALFT----STIMSKLLARPN--VKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQS 222 (356)
Q Consensus 153 --~G~~~~~~--~~~~~~~~~~~~~----~~l~~~~~~~~g--v~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~ 222 (356)
++++.... ..|........|. ..+.+.+. ..| ++++.+++|+++..+++.+. +.+.+
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~-~~G~~V~v~~~~~V~~I~~~~~g~~-V~t~~----------- 148 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQAR-QQKFAVAVYESCQVTDLQITNAGVM-LATNQ----------- 148 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHH-HcCCeEEEEECCEEEEEEEeCCEEE-EEECC-----------
Confidence 34433221 1232222223333 33444443 344 78888989999988776543 33321
Q ss_pred CCCCeEEEcCEEEEcCCCCC
Q 018414 223 CMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 223 ~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+...+.+|.||+|+|+..
T Consensus 149 --gg~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 149 --DLPSETFDLAVIATGHVW 166 (534)
T ss_pred --CCeEEEcCEEEECCCCCC
Confidence 135789999999999854
No 197
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.83 E-value=6.3e-08 Score=97.61 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg 240 (356)
.+.+.|.+.+. +.|++|++++.|++|..+++++++|.+.+ ..+++||.||+|++.
T Consensus 220 ~l~~al~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~V~~~~--------------g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 220 ALVAAMAKLAE-DLGGELRLNAEVIRIETEGGRATAVHLAD--------------GERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHH-HCCCEEEECCeEEEEEeeCCEEEEEEECC--------------CCEEECCEEEECCcH
Confidence 44566666665 67999999999999998888888887752 357899999999884
No 198
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.83 E-value=1.6e-08 Score=100.47 Aligned_cols=67 Identities=16% Similarity=0.250 Sum_probs=48.0
Q ss_pred eEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 163 YVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
|.+......|.+.|.+.+. +.||+++.+ .|+++..+ ++.+..|.+.+ +.+++||+||+|||..
T Consensus 147 ~ayhlDR~~fd~~L~~~A~-~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~--------------g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 147 YAYHLDRAKFDQFLRRHAE-ERGVEVIEG-TVVDVELDEDGRITAVRLDD--------------GRTIEADFFIDASGRR 210 (454)
T ss_dssp -EEEEEHHHHHHHHHHHHH-HTT-EEEET--EEEEEE-TTSEEEEEEETT--------------SEEEEESEEEE-SGGG
T ss_pred eeEEEeHHHHHHHHHHHHh-cCCCEEEeC-EEEEEEEcCCCCEEEEEECC--------------CCEEEEeEEEECCCcc
Confidence 4455567889888888887 569999998 47777765 56788887753 4789999999999977
Q ss_pred CCCC
Q 018414 242 GPFG 245 (356)
Q Consensus 242 ~~~~ 245 (356)
+.+.
T Consensus 211 s~L~ 214 (454)
T PF04820_consen 211 SLLA 214 (454)
T ss_dssp -CCC
T ss_pred chhh
Confidence 7654
No 199
>PRK07233 hypothetical protein; Provisional
Probab=98.82 E-value=1.1e-07 Score=93.71 Aligned_cols=38 Identities=37% Similarity=0.647 Sum_probs=35.7
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
+|+|||||++||+||+.|++. |++|+|+|+...+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCCCce
Confidence 589999999999999999999 99999999999998754
No 200
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.81 E-value=8.5e-08 Score=81.48 Aligned_cols=131 Identities=23% Similarity=0.335 Sum_probs=78.2
Q ss_pred EEECCCHHHHHHHHHhhcC----CCCeEEEEeccCCCC-CccccCCccchhhh--------c--c---chHHHHHHHhCC
Q 018414 94 VVVGAGSAGLSCAYELSKN----PNIQIAIIEQSVSPG-GGAWLGGQLFSAMV--------V--R---KPAHIFLDELGI 155 (356)
Q Consensus 94 vIIGgG~aGl~aA~~La~~----~G~~V~llEk~~~~G-g~~~~~g~~~~~~~--------~--~---~~~~~~l~~~G~ 155 (356)
+|||+|++|++++.+|.++ ...+|+|+|+... | |..|........++ . . ....+|+++.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~ 79 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGA 79 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCc
Confidence 5999999999999999876 2679999999654 6 55564432111111 1 1 235678877663
Q ss_pred ---CccccCCeEEEechHHHHHHHHHHHHc--CCCcEEE-cCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE
Q 018414 156 ---DYDEQDNYVVIKHAALFTSTIMSKLLA--RPNVKLF-NAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM 229 (356)
Q Consensus 156 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~gv~i~-~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i 229 (356)
.......|+....-.+|.+..++.+.+ ..++++. ...+|+++...++.. .+.+. ++..+
T Consensus 80 ~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~-~v~~~--------------~g~~~ 144 (156)
T PF13454_consen 80 DEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGY-RVVTA--------------DGQSI 144 (156)
T ss_pred ccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcE-EEEEC--------------CCCEE
Confidence 111112232222224444444444432 2354443 244899998877664 33333 24678
Q ss_pred EcCEEEEcCCC
Q 018414 230 EAKVVVSSCGH 240 (356)
Q Consensus 230 ~Ak~VI~AtGg 240 (356)
.+|.||+|+|+
T Consensus 145 ~~d~VvLa~Gh 155 (156)
T PF13454_consen 145 RADAVVLATGH 155 (156)
T ss_pred EeCEEEECCCC
Confidence 99999999995
No 201
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=5.7e-08 Score=95.62 Aligned_cols=136 Identities=17% Similarity=0.177 Sum_probs=85.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC--------ccchhhhccchHHHHHHHhCCCccccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG--------QLFSAMVVRKPAHIFLDELGIDYDEQD 161 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g--------~~~~~~~~~~~~~~~l~~~G~~~~~~~ 161 (356)
.-+|+|||||++||.+|..|.++ |++|+++||...+||- |.-- .++..+..+. ..+.+.--.++|...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iGGl-W~y~~~~~~~~ss~Y~~l~tn~-pKe~~~~~dfpf~~~- 81 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIGGL-WKYTENVEVVHSSVYKSLRTNL-PKEMMGYSDFPFPER- 81 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCccce-EeecCcccccccchhhhhhccC-ChhhhcCCCCCCccc-
Confidence 36999999999999999999999 9999999999988863 4211 1122111111 111111123344333
Q ss_pred CeEEE-echHHHHHHHHHHHHcCCCc--EEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414 162 NYVVI-KHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237 (356)
Q Consensus 162 ~~~~~-~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A 237 (356)
++.. .+..++.+.|...+. +.++ .|.++++|..+...+ |++.+..... .+ ......+|.||+|
T Consensus 82 -~~~~~p~~~e~~~YL~~yA~-~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~-------~~----~~~~~ifd~VvVc 148 (448)
T KOG1399|consen 82 -DPRYFPSHREVLEYLRDYAK-HFDLLKMINFNTEVVRVDSIDKGKWRVTTKDN-------GT----QIEEEIFDAVVVC 148 (448)
T ss_pred -CcccCCCHHHHHHHHHHHHH-hcChhhheEecccEEEEeeccCCceeEEEecC-------Cc----ceeEEEeeEEEEc
Confidence 2222 344567766655553 5554 688888888888776 5554443321 10 1256779999999
Q ss_pred CCCCC
Q 018414 238 CGHDG 242 (356)
Q Consensus 238 tGg~~ 242 (356)
+|++-
T Consensus 149 tGh~~ 153 (448)
T KOG1399|consen 149 TGHYV 153 (448)
T ss_pred ccCcC
Confidence 99883
No 202
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.79 E-value=9.8e-09 Score=90.21 Aligned_cols=116 Identities=25% Similarity=0.327 Sum_probs=70.7
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchH-HHHHHHhCCCccccCCeEEEechH
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPA-HIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~-~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
||+|||||++|+.+|.+|++. +.+|+|+|+.... ++...+++......... ...+. ...
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----------------~~~ 60 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSPGT---PYNSGCIPSPLLVEIAPHRHEFL----------------PAR 60 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSSHH---HHHHSHHHHHHHHHHHHHHHHHH----------------HHH
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEeccccc---ccccccccccccccccccccccc----------------ccc
Confidence 799999999999999999988 9999999886421 11122222211111100 00000 000
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEE----EEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG----GVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~----gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
.+ .+.+.+. ..+++++.++++.++......+. .+... . .++..++.+|+||+|||..
T Consensus 61 ~~--~~~~~~~-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~-------~----~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 61 LF--KLVDQLK-NRGVEIRLNAKVVSIDPESKRVVCPAVTIQVV-------E----TGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HG--HHHHHHH-HHTHEEEHHHTEEEEEESTTEEEETCEEEEEE-------E----TTTEEEEEEEEEEEESTEE
T ss_pred cc--ccccccc-cceEEEeeccccccccccccccccCcccceee-------c----cCCceEecCCeeeecCccc
Confidence 00 3444443 46899989999999988777541 11110 0 1135789999999999954
No 203
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.79 E-value=7.5e-08 Score=97.05 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=36.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG 134 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g 134 (356)
|||+|||+|++|+.+|+.|++. |++|+|||++...| +.|.++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~-~~~~g~ 42 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADS-FLKIGA 42 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccC-CCcccc
Confidence 6999999999999999999999 99999999998776 344443
No 204
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.78 E-value=1e-08 Score=99.94 Aligned_cols=44 Identities=23% Similarity=0.525 Sum_probs=38.6
Q ss_pred ccCCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 86 ITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 86 ~~~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
....+|||+|||||..|.-||+-++-+ |+||.|+|++++..|++
T Consensus 63 ~~~~~fDVLIIGGGAtGaGcALDA~TR-GLktaLVE~~DF~SGTS 106 (680)
T KOG0042|consen 63 KSTHEFDVLIIGGGATGAGCALDAATR-GLKTALVEAGDFASGTS 106 (680)
T ss_pred hcCCcccEEEECCCccCcceeehhhcc-cceeEEEecccccCCcc
Confidence 344569999999999999999999999 99999999998766554
No 205
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.77 E-value=8.4e-08 Score=92.24 Aligned_cols=70 Identities=21% Similarity=0.178 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccc
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 249 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~ 249 (356)
..+...+.+.+. ..|++++++++|++++.+++.+.+|.+.. +.+|.+++||+|.|+.|. .++
T Consensus 173 ~~vvkni~~~l~-~~G~ei~f~t~VeDi~~~~~~~~~v~~~~--------------g~~i~~~~vvlA~Grsg~---dw~ 234 (486)
T COG2509 173 PKVVKNIREYLE-SLGGEIRFNTEVEDIEIEDNEVLGVKLTK--------------GEEIEADYVVLAPGRSGR---DWF 234 (486)
T ss_pred HHHHHHHHHHHH-hcCcEEEeeeEEEEEEecCCceEEEEccC--------------CcEEecCEEEEccCcchH---HHH
Confidence 456677777776 78999999999999999998888888753 478999999999997763 555
Q ss_pred hhhhcc-Cc
Q 018414 250 KRLKSI-GM 257 (356)
Q Consensus 250 ~~~~~~-g~ 257 (356)
..+... |.
T Consensus 235 ~~l~~K~Gv 243 (486)
T COG2509 235 EMLHKKLGV 243 (486)
T ss_pred HHHHHhcCc
Confidence 554333 44
No 206
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.75 E-value=1.2e-07 Score=87.79 Aligned_cols=36 Identities=50% Similarity=0.729 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~ 126 (356)
..||+|||+|.-|+++|++|+++ |.++++||+-+.+
T Consensus 7 ~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~p 42 (399)
T KOG2820|consen 7 SRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPLP 42 (399)
T ss_pred ceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCCC
Confidence 58999999999999999999999 9999999997643
No 207
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.74 E-value=8.7e-08 Score=95.56 Aligned_cols=136 Identities=23% Similarity=0.373 Sum_probs=88.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccc---------h---HHHHHHHhCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRK---------P---AHIFLDELGID 156 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~---------~---~~~~l~~~G~~ 156 (356)
..||+|||||.+|+.+|++|++. |.+ .+++|+...-.|++|....+......+. . ..+..++.|+.
T Consensus 39 ~A~vvViggG~~g~~~~yhlak~-g~k~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtgl~ 117 (856)
T KOG2844|consen 39 TADVVVIGGGSLGCSTAYHLAKR-GMKGAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETGLH 117 (856)
T ss_pred cccEEEEcCCchhHHHHHHHHHc-cccceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcCCC
Confidence 37999999999999999999999 999 5566666555566665433221100000 0 01111222322
Q ss_pred --ccccCC--------------------------------------eEE----------------EechHHHHHHHHHHH
Q 018414 157 --YDEQDN--------------------------------------YVV----------------IKHAALFTSTIMSKL 180 (356)
Q Consensus 157 --~~~~~~--------------------------------------~~~----------------~~~~~~~~~~l~~~~ 180 (356)
|...+. |++ ...+..++..|...+
T Consensus 118 tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC~ala~~A 197 (856)
T KOG2844|consen 118 TGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLCQALARAA 197 (856)
T ss_pred cceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHHHHHHHHH
Confidence 111111 111 123456667777666
Q ss_pred HcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 181 LARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 181 ~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
. +.|+.|++++.|++|....+++.+|.+. -..|++.+||.|+|-++
T Consensus 198 ~-~~GA~viE~cpV~~i~~~~~~~~gVeT~---------------~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 198 S-ALGALVIENCPVTGLHVETDKFGGVETP---------------HGSIETECVVNAAGVWA 243 (856)
T ss_pred H-hcCcEEEecCCcceEEeecCCccceecc---------------CcceecceEEechhHHH
Confidence 5 7899999999999999988888888874 25599999999999776
No 208
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.74 E-value=1.7e-07 Score=90.84 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..+.+.|.+.+.+..|++++++++|++|.+.++.-+.|.+.+ .. +++..+++|++|++..||.+
T Consensus 181 G~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~------~~---~~~~~~v~a~FVfvGAGG~a 244 (488)
T PF06039_consen 181 GALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKD------LK---TGEKREVRAKFVFVGAGGGA 244 (488)
T ss_pred HHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEe------cC---CCCeEEEECCEEEECCchHh
Confidence 567788888888777999999999999999765534444422 11 22467899999999999765
No 209
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.73 E-value=1.7e-07 Score=90.86 Aligned_cols=124 Identities=22% Similarity=0.373 Sum_probs=74.6
Q ss_pred cEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCc-cccCCccchhhhccchHHHHHHHh-CCCccc-------c-
Q 018414 92 DVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGG-AWLGGQLFSAMVVRKPAHIFLDEL-GIDYDE-------Q- 160 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~-~~~~g~~~~~~~~~~~~~~~l~~~-G~~~~~-------~- 160 (356)
||+|||||+||+++|++|++ .+|++|+|+|+.+..++. .|. .+..-. ......+++.+ +..|.. .
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~---~~~~~~-~~~~~~~~~~~v~~~W~~~~v~~~~~~ 76 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWS---FFDSDL-SDAQHAWLADLVQTDWPGYEVRFPKYR 76 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccce---eccccc-chhhhhhhhhhheEeCCCCEEECcchh
Confidence 89999999999999999997 359999999998765542 331 111000 00111122211 111110 0
Q ss_pred ---CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414 161 ---DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237 (356)
Q Consensus 161 ---~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A 237 (356)
...+...+..+|.+.+.+++. .+ ++++++|+++ +.+. |.+. ++.+++|+.||.|
T Consensus 77 ~~l~~~Y~~I~r~~f~~~l~~~l~--~~--i~~~~~V~~v--~~~~---v~l~--------------dg~~~~A~~VI~A 133 (370)
T TIGR01789 77 RKLKTAYRSMTSTRFHEGLLQAFP--EG--VILGRKAVGL--DADG---VDLA--------------PGTRINARSVIDC 133 (370)
T ss_pred hhcCCCceEEEHHHHHHHHHHhhc--cc--EEecCEEEEE--eCCE---EEEC--------------CCCEEEeeEEEEC
Confidence 112234456777777766553 23 6668888877 3343 3333 2467999999999
Q ss_pred CCCCC
Q 018414 238 CGHDG 242 (356)
Q Consensus 238 tGg~~ 242 (356)
+|..+
T Consensus 134 ~G~~s 138 (370)
T TIGR01789 134 RGFKP 138 (370)
T ss_pred CCCCC
Confidence 99765
No 210
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.72 E-value=4.5e-08 Score=98.92 Aligned_cols=134 Identities=17% Similarity=0.191 Sum_probs=78.2
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCC--------ccchhhhccchHHHHHHHh-CCCccccCC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGG--------QLFSAMVVRKPAHIFLDEL-GIDYDEQDN 162 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g--------~~~~~~~~~~~~~~~l~~~-G~~~~~~~~ 162 (356)
.|+|||||++||++|..|.+. |++++++||.+.+||. |.-. .++..+..+.. .++..+ .+++. ++
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iGG~-W~~~~~~~~g~~~~y~sl~~n~s--k~~~~fsdfp~p--~~ 76 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIGGL-WRYTENPEDGRSSVYDSLHTNTS--KEMMAFSDFPFP--ED 76 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSSGG-GCHSTTCCCSEGGGSTT-B-SS---GGGSCCTTS-HC--CC
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCCcc-CeeCCcCCCCccccccceEEeeC--chHhcCCCcCCC--CC
Confidence 699999999999999999999 9999999999998864 4311 11221111110 011001 12222 23
Q ss_pred eEEEechHHHHHHHHHHHHcCCCc--EEEcCeEEEEEEEeCC----eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEE
Q 018414 163 YVVIKHAALFTSTIMSKLLARPNV--KLFNAVAAEDLIVKGG----RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVS 236 (356)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~~~~~gv--~i~~~~~v~~i~~~~~----~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~ 236 (356)
++.+.+..++.+.|...+. +.++ .|.++|+|+++.+.++ .-+.|.+.. ++...+-..|.||+
T Consensus 77 ~p~f~~~~~v~~Yl~~Ya~-~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~-----------~g~~~~~~fD~Vvv 144 (531)
T PF00743_consen 77 YPDFPSHSEVLEYLESYAE-HFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEN-----------DGKEETEEFDAVVV 144 (531)
T ss_dssp CSSSEBHHHHHHHHHHHHH-HTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETT-----------TTEEEEEEECEEEE
T ss_pred CCCCCCHHHHHHHHHHHHh-hhCCcceEEEccEEeEeeeccccCCCceEEEEeec-----------CCeEEEEEeCeEEE
Confidence 3334456677776655554 4454 5899999999988642 122333321 11234456799999
Q ss_pred cCCCCCC
Q 018414 237 SCGHDGP 243 (356)
Q Consensus 237 AtGg~~~ 243 (356)
|+|.++.
T Consensus 145 atG~~~~ 151 (531)
T PF00743_consen 145 ATGHFSK 151 (531)
T ss_dssp EE-SSSC
T ss_pred cCCCcCC
Confidence 9998873
No 211
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3.6e-08 Score=94.82 Aligned_cols=135 Identities=24% Similarity=0.338 Sum_probs=84.6
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC-CCCCccccC--Cccchhhhccc------hHHHHHHHhCCCcccc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV-SPGGGAWLG--GQLFSAMVVRK------PAHIFLDELGIDYDEQ 160 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~-~~Gg~~~~~--g~~~~~~~~~~------~~~~~l~~~G~~~~~~ 160 (356)
.|||||||||.||+.||.++++- |.+.+++..+- .+|--.++. |++-...+.+. -....++..|+.|...
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~L 106 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVL 106 (679)
T ss_pred cccEEEECCCccchHHHHHHHhc-CCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHh
Confidence 49999999999999999999999 99999998763 334322221 11111111111 1123444555555432
Q ss_pred ---CCeEEEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-----eEEEEEEcceeeecccCCCCCCCCe
Q 018414 161 ---DNYVVIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-----RVGGVVTNWALVSMNHDTQSCMDPN 227 (356)
Q Consensus 161 ---~~~~~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-----~v~gv~~~~~~~~~~~~~~~~g~~~ 227 (356)
.+..++. ....|...+.+.+....+.+++.+ .|.+++..+. .|.||...+ +.
T Consensus 107 Nrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~-~V~dliv~~~~~~~~~~~gV~l~d--------------gt 171 (679)
T KOG2311|consen 107 NRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREG-AVADLIVEDPDDGHCVVSGVVLVD--------------GT 171 (679)
T ss_pred hccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhh-hhhheeeccCCCCceEEEEEEEec--------------Cc
Confidence 1111222 223444455555555678899888 7888877543 377887753 47
Q ss_pred EEEcCEEEEcCCC
Q 018414 228 VMEAKVVVSSCGH 240 (356)
Q Consensus 228 ~i~Ak~VI~AtGg 240 (356)
.+.|+.||+.||-
T Consensus 172 ~v~a~~VilTTGT 184 (679)
T KOG2311|consen 172 VVYAESVILTTGT 184 (679)
T ss_pred EeccceEEEeecc
Confidence 8999999999994
No 212
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.71 E-value=3.5e-07 Score=90.44 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=37.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
+|||||||+|.+|+.+|..|++. |++|+++|++...||..
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yGG~~ 43 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYGGES 43 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcCccc
Confidence 59999999999999999999999 99999999999888654
No 213
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.71 E-value=4.4e-07 Score=91.30 Aligned_cols=39 Identities=49% Similarity=0.762 Sum_probs=36.3
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
.||||||||++||+||..|+++ |++|+|+||+..+||.+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCcc
Confidence 5899999999999999999999 99999999999888654
No 214
>PRK02106 choline dehydrogenase; Validated
Probab=98.70 E-value=6.1e-08 Score=99.09 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=42.4
Q ss_pred HHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 177 MSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 177 ~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+..+.+..|++|+.++.|++|+.+++++.||.+.+. . +....+.+|.||+|+|+..
T Consensus 207 l~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~------~----~~~~~~~ak~VILaaGai~ 262 (560)
T PRK02106 207 LDPALKRPNLTIVTHALTDRILFEGKRAVGVEYERG------G----GRETARARREVILSAGAIN 262 (560)
T ss_pred hccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeC------C----cEEEEEeeeeEEEccCCCC
Confidence 333444678999999999999999888999987531 0 1234578999999999865
No 215
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.69 E-value=3.3e-07 Score=68.69 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=60.1
Q ss_pred EEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechHHH
Q 018414 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAALF 172 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~ 172 (356)
|+|||||..|+.+|..|++. |.+|+|+++.+.+. .. .....
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~-~~-------------------------------------~~~~~ 42 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL-PG-------------------------------------FDPDA 42 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS-TT-------------------------------------SSHHH
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh-hh-------------------------------------cCHHH
Confidence 79999999999999999999 99999999997543 11 11333
Q ss_pred HHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEc
Q 018414 173 TSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTN 210 (356)
Q Consensus 173 ~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~ 210 (356)
...+.+.+. +.|+++++++.++++..+++.+. |.+.
T Consensus 43 ~~~~~~~l~-~~gV~v~~~~~v~~i~~~~~~~~-V~~~ 78 (80)
T PF00070_consen 43 AKILEEYLR-KRGVEVHTNTKVKEIEKDGDGVE-VTLE 78 (80)
T ss_dssp HHHHHHHHH-HTTEEEEESEEEEEEEEETTSEE-EEEE
T ss_pred HHHHHHHHH-HCCCEEEeCCEEEEEEEeCCEEE-EEEe
Confidence 444555555 56999999999999998876666 6664
No 216
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.68 E-value=6.3e-08 Score=92.17 Aligned_cols=38 Identities=34% Similarity=0.665 Sum_probs=34.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
.+|+|||||++|+++|+.|.+. |++|+|+|+...+.+.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~~R~~ 40 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRK-GIDVVVLESREDPRGE 40 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCeEEEEeeccccccC
Confidence 5899999999999999999999 9999999998766543
No 217
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.67 E-value=9.8e-08 Score=86.63 Aligned_cols=142 Identities=23% Similarity=0.326 Sum_probs=90.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCC-----CCeEEEEeccCCCCCccccCCccchhhhccc----------hHHHHHH-Hh-
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNP-----NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK----------PAHIFLD-EL- 153 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~-----G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~----------~~~~~l~-~~- 153 (356)
..|+|||||+.|+.+||.|+++| -..++|+|+....|+.+-..+.++..++... ...+.|. ++
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdeyd 90 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYD 90 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhhc
Confidence 58999999999999999999983 2789999999877765533333322222221 0111121 11
Q ss_pred CC---CccccC--------------------Ce-----------------EEEechHHHHHHHHHHHHcCCCcEEEcCeE
Q 018414 154 GI---DYDEQD--------------------NY-----------------VVIKHAALFTSTIMSKLLARPNVKLFNAVA 193 (356)
Q Consensus 154 G~---~~~~~~--------------------~~-----------------~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~ 193 (356)
|+ .|.... +| ....|+..|.+.+++.+.+..||+++++ .
T Consensus 91 GvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~G-k 169 (380)
T KOG2852|consen 91 GVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFG-K 169 (380)
T ss_pred CcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEe-e
Confidence 11 111000 01 0134678899999999998888999999 7
Q ss_pred EEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 194 AEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 194 v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
|.++..+.+++.++.... +. +.......+.+|++.|.+.+
T Consensus 170 v~ev~dEk~r~n~v~~ae-----~~-----~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 170 VKEVSDEKHRINSVPKAE-----AE-----DTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred eEEeecccccccccchhh-----hc-----CceEEeeeeEEEEecCCCch
Confidence 888875666766554321 00 12356677899999997764
No 218
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.67 E-value=2.7e-07 Score=94.38 Aligned_cols=90 Identities=21% Similarity=0.336 Sum_probs=66.0
Q ss_pred hHHHHHHHhCCCccccCC--eE------------------EEe-----chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEE
Q 018414 145 PAHIFLDELGIDYDEQDN--YV------------------VIK-----HAALFTSTIMSKLLARPNVKLFNAVAAEDLIV 199 (356)
Q Consensus 145 ~~~~~l~~~G~~~~~~~~--~~------------------~~~-----~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~ 199 (356)
..++||+++|++|+...+ +. ... ....+...|.+.+. +.|++|++++.+++|+.
T Consensus 69 ~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~~R~~~~~~~~G~~i~~~L~~~~~-~~gi~i~~~~~~~~Li~ 147 (565)
T TIGR01816 69 EAVLELEHMGMPFSRTEDGKIYQRPFGGHTRDFGKGGAAERACAAADRTGHAILHTLYQQNL-KADTSFFNEYFALDLLM 147 (565)
T ss_pred HHHHHHHhcCcccccCCCCceeecccccccccccCCcceeEEeecCCCchHHHHHHHHHHHH-hCCCEEEeccEEEEEEe
Confidence 356899999999965321 11 001 13457788888776 67999999999999999
Q ss_pred eCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC
Q 018414 200 KGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 200 ~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~ 244 (356)
++++|.|+...+ .. ++....+.||.||+||||++..
T Consensus 148 ~~g~v~Ga~~~~------~~---~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 148 EDGECRGVIAYC------LE---TGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred eCCEEEEEEEEE------cC---CCcEEEEEeCeEEECCCCcccc
Confidence 889999998632 11 1235689999999999998854
No 219
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.63 E-value=3.8e-07 Score=88.10 Aligned_cols=42 Identities=48% Similarity=0.722 Sum_probs=39.2
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~ 131 (356)
+..||||||+|.+||++|+.|.+. |++|+|+|.++.+||.+|
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcCceeE
Confidence 458999999999999999999999 999999999999998775
No 220
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.62 E-value=9.6e-08 Score=102.47 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=68.2
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 168 (356)
...+|+|||+|||||+||+.|++. |++|+|+|+...+||-.. +|++- +..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~GG~l~---------------------yGIP~--------~rl 354 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLGGVLR---------------------YGIPE--------FRL 354 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCCceEE---------------------ccCCC--------CcC
Confidence 357999999999999999999999 999999999987776321 22221 112
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
..++.+...+.+. +.|++|+.++.+-. .+...+ .....+|.||+|||..
T Consensus 355 p~~vi~~~i~~l~-~~Gv~f~~n~~vG~---------dit~~~--------------l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 355 PNQLIDDVVEKIK-LLGGRFVKNFVVGK---------TATLED--------------LKAAGFWKIFVGTGAG 403 (944)
T ss_pred hHHHHHHHHHHHH-hhcCeEEEeEEecc---------EEeHHH--------------hccccCCEEEEeCCCC
Confidence 3455555556665 57999999875421 111111 1234689999999985
No 221
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.62 E-value=1.9e-07 Score=99.49 Aligned_cols=39 Identities=36% Similarity=0.641 Sum_probs=35.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
..+|+|||||+||+++|+.|+++ |++|+|+|+...+||.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~GG~ 577 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENAGGV 577 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCeEEEEecccccCcc
Confidence 46899999999999999999999 9999999999877753
No 222
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.61 E-value=2.1e-07 Score=83.91 Aligned_cols=130 Identities=19% Similarity=0.210 Sum_probs=75.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc---cCCccchhhh--c--c-chHHHH---HHHhCCC--c
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW---LGGQLFSAMV--V--R-KPAHIF---LDELGID--Y 157 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~---~~g~~~~~~~--~--~-~~~~~~---l~~~G~~--~ 157 (356)
.+|+|||+|++|++||+.|++. |.+|+|+||+..+||..- ..++.++.-. . + ....++ +.+-|+- +
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W 80 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVW 80 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeec
Confidence 3799999999999999999999 999999999988876431 1112121111 0 1 112222 3333331 1
Q ss_pred -----ccc--------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCC
Q 018414 158 -----DEQ--------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCM 224 (356)
Q Consensus 158 -----~~~--------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g 224 (356)
... ..-++... .-+..|.+.+ ....++.++++|+++...++. +.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~d~~pyvg~--pgmsalak~L--AtdL~V~~~~rVt~v~~~~~~-W~l~~~~------------- 142 (331)
T COG3380 81 TPAVWTFTGDGSPPRGDEDPYVGE--PGMSALAKFL--ATDLTVVLETRVTEVARTDND-WTLHTDD------------- 142 (331)
T ss_pred cccccccccCCCCCCCCCCccccC--cchHHHHHHH--hccchhhhhhhhhhheecCCe-eEEEecC-------------
Confidence 000 00111111 1123344433 346788999999999887554 3344432
Q ss_pred CCeEEEcCEEEEcCC
Q 018414 225 DPNVMEAKVVVSSCG 239 (356)
Q Consensus 225 ~~~~i~Ak~VI~AtG 239 (356)
......+|.||+|-=
T Consensus 143 g~~~~~~d~vvla~P 157 (331)
T COG3380 143 GTRHTQFDDVVLAIP 157 (331)
T ss_pred CCcccccceEEEecC
Confidence 135678899998754
No 223
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.61 E-value=1.8e-07 Score=98.84 Aligned_cols=124 Identities=17% Similarity=0.204 Sum_probs=74.5
Q ss_pred cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCC---CCccccCCccchhhhccch-HHHHHHHhCCCcc-----c--
Q 018414 92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSP---GGGAWLGGQLFSAMVVRKP-AHIFLDELGIDYD-----E-- 159 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~---Gg~~~~~g~~~~~~~~~~~-~~~~l~~~G~~~~-----~-- 159 (356)
+|+|||||++|+++|+.|++. +|++|+|+||.... |.+..........+....+ ..+.+......++ .
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHFKG 81 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEECC
Confidence 699999999999999999985 47999999998753 3222111111111111111 1111111111110 0
Q ss_pred -----cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEE
Q 018414 160 -----QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234 (356)
Q Consensus 160 -----~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~V 234 (356)
.+..+...+...+.+.|++++. +.|++++++++++++.. ..+++|.|
T Consensus 82 ~~~~~~g~~~~~i~R~~L~~~L~e~a~-~~GV~i~~g~~v~~i~~---------------------------~~~~~D~V 133 (765)
T PRK08255 82 RRIRSGGHGFAGIGRKRLLNILQARCE-ELGVKLVFETEVPDDQA---------------------------LAADADLV 133 (765)
T ss_pred EEEEECCeeEecCCHHHHHHHHHHHHH-HcCCEEEeCCccCchhh---------------------------hhcCCCEE
Confidence 0111223466888889888886 56999999987665410 12468999
Q ss_pred EEcCCCCCC
Q 018414 235 VSSCGHDGP 243 (356)
Q Consensus 235 I~AtGg~~~ 243 (356)
|.|+|..+.
T Consensus 134 VgADG~~S~ 142 (765)
T PRK08255 134 IASDGLNSR 142 (765)
T ss_pred EEcCCCCHH
Confidence 999997764
No 224
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.60 E-value=1.4e-06 Score=84.94 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC-C
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD-G 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~-~ 242 (356)
.+.+.|.+.+. +.|++++.+++|.++..+++++.++.+.. +....++||.||+|+|++ +
T Consensus 264 RL~~aL~~~~~-~~Gg~il~g~~V~~i~~~~~~v~~V~t~~------------g~~~~l~AD~vVLAaGaw~S 323 (419)
T TIGR03378 264 RLEEALKHRFE-QLGGVMLPGDRVLRAEFEGNRVTRIHTRN------------HRDIPLRADHFVLASGSFFS 323 (419)
T ss_pred HHHHHHHHHHH-HCCCEEEECcEEEEEEeeCCeEEEEEecC------------CccceEECCEEEEccCCCcC
Confidence 45566666665 67999999999999999999888877642 112579999999999988 5
No 225
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.59 E-value=1.9e-07 Score=94.91 Aligned_cols=57 Identities=19% Similarity=0.252 Sum_probs=42.6
Q ss_pred HHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 176 l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++..+.++.|++|+.++.|++|+.++++++||.+... . .....+.+|.||+|.|+..
T Consensus 199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~------~----~~~~~~~ak~VIlaAGai~ 255 (532)
T TIGR01810 199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKG------G----RKEHTEANKEVILSAGAIN 255 (532)
T ss_pred HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeC------C----cEEEEEEeeeEEEccCCCC
Confidence 3444545678999999999999999889999987421 0 0123468999999999854
No 226
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.55 E-value=1.9e-07 Score=99.90 Aligned_cols=40 Identities=38% Similarity=0.669 Sum_probs=36.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
.++|+|||||+||++||+.|++. |++|+|+|+...+||..
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~lGG~l 576 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKPGGVV 576 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCeEEEEecccccCcee
Confidence 47999999999999999999999 99999999998877643
No 227
>PRK12831 putative oxidoreductase; Provisional
Probab=98.54 E-value=1.2e-07 Score=94.76 Aligned_cols=41 Identities=39% Similarity=0.678 Sum_probs=36.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
...||+|||||++|+++|+.|++. |++|+|+|+...+||..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~l 179 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEPGGVL 179 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCCCCee
Confidence 457999999999999999999999 99999999988777643
No 228
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.53 E-value=5.4e-07 Score=82.86 Aligned_cols=142 Identities=23% Similarity=0.284 Sum_probs=88.1
Q ss_pred cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCC-------------ccccCCccchhhhccch--HHHHHHHh
Q 018414 90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG-------------GAWLGGQLFSAMVVRKP--AHIFLDEL 153 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg-------------~~~~~g~~~~~~~~~~~--~~~~l~~~ 153 (356)
+||.||||||+.|++.|++|.- +|+.+|.|+||....+- -.+..+.+..+++.+.. ..+++++.
T Consensus 48 ~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e~ 127 (453)
T KOG2665|consen 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDEK 127 (453)
T ss_pred cccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhhc
Confidence 5999999999999999999875 57999999999765431 11222333344555443 24566777
Q ss_pred CCCccccCCeEE----------------------------------------------------EechHHHHHHHHHHHH
Q 018414 154 GIDYDEQDNYVV----------------------------------------------------IKHAALFTSTIMSKLL 181 (356)
Q Consensus 154 G~~~~~~~~~~~----------------------------------------------------~~~~~~~~~~l~~~~~ 181 (356)
++++...+...+ +.....+...+-+.+.
T Consensus 128 ~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~edF~ 207 (453)
T KOG2665|consen 128 KIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGEDFD 207 (453)
T ss_pred CCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHHHH
Confidence 777655433222 1111334445555554
Q ss_pred cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..|.+++++.++..+...+..-.. ..++.+| +...+++.+.||-|+|-.+
T Consensus 208 -~~gg~i~~n~~l~g~~~n~~~~~~----Ypivv~n------gk~ee~r~~~~vtc~gl~s 257 (453)
T KOG2665|consen 208 -FMGGRIYTNFRLQGIAQNKEATFS----YPIVVLN------GKGEEKRTKNVVTCAGLQS 257 (453)
T ss_pred -HhcccccccceeccchhccCCCCC----CceEEec------CccceeEEeEEEEeccccH
Confidence 668888888888888765431100 0001111 2357899999999999554
No 229
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.52 E-value=1.2e-07 Score=68.88 Aligned_cols=35 Identities=37% Similarity=0.695 Sum_probs=32.0
Q ss_pred EECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 95 VVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 95 IIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
|||||++||++|+.|+++ |.+|+|+|+.+.+||.+
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~GG~~ 35 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLGGRA 35 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSSGGG
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccCcce
Confidence 899999999999999999 99999999999988754
No 230
>PLN02785 Protein HOTHEAD
Probab=98.51 E-value=6.1e-07 Score=91.87 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.||+||||+|.+|+.+|.+|++ +.+|+|||++.
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~ 87 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGG 87 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCC
Confidence 4999999999999999999998 48999999986
No 231
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.50 E-value=1.1e-06 Score=86.00 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=32.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPG 127 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~G 127 (356)
+||+|||||.+|+.+|+.|+++ |++|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCcEEEEecccccc
Confidence 3899999999999999999999 99999999876543
No 232
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=98.47 E-value=1.2e-06 Score=87.87 Aligned_cols=38 Identities=39% Similarity=0.624 Sum_probs=35.1
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~ 126 (356)
.+||.||||||.||+..|.+|++.|..+|+|||++..+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 36999999999999999999999889999999998754
No 233
>PLN02612 phytoene desaturase
Probab=98.47 E-value=4.5e-06 Score=85.44 Aligned_cols=40 Identities=35% Similarity=0.420 Sum_probs=36.3
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
...+|+|||+|++|+++|++|+++ |++|+|+|+...+||.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~gG~ 131 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVLGGK 131 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCCCCc
Confidence 357999999999999999999999 9999999998877764
No 234
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.1e-07 Score=84.02 Aligned_cols=110 Identities=24% Similarity=0.393 Sum_probs=75.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEE--E
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVV--I 166 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~--~ 166 (356)
..|||+||||||+|.++|++++++ |++.-++-.. .|| +..+ ..+++ +|.. .
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARK-GiRTGl~aer--fGG------Qvld-------------T~~IE-----NfIsv~~ 262 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARK-GIRTGLVAER--FGG------QVLD-------------TMGIE-----NFISVPE 262 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhh-cchhhhhhhh--hCC------eecc-------------ccchh-----heecccc
Confidence 359999999999999999999999 9998776432 333 2222 11111 1110 1
Q ss_pred echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe--CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414 167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVK--GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~--~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg 240 (356)
.....+...|.+... +..|+++...++++++.. ++...-|...+ +-.+++|.||++||+
T Consensus 263 teGpkl~~ale~Hv~-~Y~vDimn~qra~~l~~a~~~~~l~ev~l~n--------------GavLkaktvIlstGA 323 (520)
T COG3634 263 TEGPKLAAALEAHVK-QYDVDVMNLQRASKLEPAAVEGGLIEVELAN--------------GAVLKARTVILATGA 323 (520)
T ss_pred ccchHHHHHHHHHHh-hcCchhhhhhhhhcceecCCCCccEEEEecC--------------CceeccceEEEecCc
Confidence 134566677777765 678999988888888873 34555666653 467999999999995
No 235
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.46 E-value=1.1e-06 Score=87.07 Aligned_cols=111 Identities=9% Similarity=0.174 Sum_probs=67.1
Q ss_pred cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
+|||||||++|+++|..|++. ++.+|+|||+.+..+ |.... +++..... .....
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~---~~~~~-------------------~~~~~~~~---~~~~~ 56 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS---FGACG-------------------LPYFVGGF---FDDPN 56 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce---eecCC-------------------CceEeccc---cCCHH
Confidence 599999999999999999885 246999999987543 11000 00000000 00112
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEE--cCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVME--AKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~--Ak~VI~AtGg~~ 242 (356)
++.....+.+. +.|++++.+++|+.+..++..+. +.+ .. ...+++ +|++|+|||+..
T Consensus 57 ~~~~~~~~~~~-~~gv~~~~~~~V~~id~~~~~v~---~~~------~~-----~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 57 TMIARTPEEFI-KSGIDVKTEHEVVKVDAKNKTIT---VKN------LK-----TGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred HhhcCCHHHHH-HCCCeEEecCEEEEEECCCCEEE---EEE------CC-----CCCEEEecCCEEEECCCCCC
Confidence 22222233333 56999999999999987665433 211 00 123444 999999999764
No 236
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.45 E-value=5.4e-07 Score=86.31 Aligned_cols=136 Identities=19% Similarity=0.196 Sum_probs=72.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhh----------hc--c----chHHHHHHHh
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM----------VV--R----KPAHIFLDEL 153 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~----------~~--~----~~~~~~l~~~ 153 (356)
.||+|+||.||++|+.|+.|.+.+..+++.+||.+.. .|..|.+.... +. + .....+|.+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f---~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~ 78 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF---SWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEH 78 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-----TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC---CcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHc
Confidence 3899999999999999999998635999999988643 36655443211 10 0 1234555554
Q ss_pred CCCccc--cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC---eEEEEEEcceeeecccCCCCCCCCeE
Q 018414 154 GIDYDE--QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG---RVGGVVTNWALVSMNHDTQSCMDPNV 228 (356)
Q Consensus 154 G~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~---~v~gv~~~~~~~~~~~~~~~~g~~~~ 228 (356)
|--+.- .+.+ .....+|.+. ++.+.++..-.+.++++|++|...++ ....|.+.+ .+|+..+
T Consensus 79 ~rl~~f~~~~~~--~p~R~ef~dY-l~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~----------~~g~~~~ 145 (341)
T PF13434_consen 79 GRLYEFYNRGYF--FPSRREFNDY-LRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRD----------SDGDGET 145 (341)
T ss_dssp T-HHHHHHH--S--S-BHHHHHHH-HHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEE----------TTS-EEE
T ss_pred CChhhhhhcCCC--CCCHHHHHHH-HHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEee----------cCCCeeE
Confidence 422111 0111 1122444443 34455555655888999999988643 244455421 1234688
Q ss_pred EEcCEEEEcCCCC
Q 018414 229 MEAKVVVSSCGHD 241 (356)
Q Consensus 229 i~Ak~VI~AtGg~ 241 (356)
+.|+.||+|+|..
T Consensus 146 ~~ar~vVla~G~~ 158 (341)
T PF13434_consen 146 YRARNVVLATGGQ 158 (341)
T ss_dssp EEESEEEE----E
T ss_pred EEeCeEEECcCCC
Confidence 9999999999944
No 237
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.44 E-value=2.7e-06 Score=78.82 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+.+.|..++. ..|.-++.+-+|.+....+++|..+.+.+ + ....++|+..|+|+|++=+
T Consensus 260 l~~~L~~~f~-~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn------~------~diP~~a~~~VLAsGsffs 318 (421)
T COG3075 260 LHNQLQRQFE-QLGGLWMPGDEVKKATCKGGRVTEIYTRN------H------ADIPLRADFYVLASGSFFS 318 (421)
T ss_pred HHHHHHHHHH-HcCceEecCCceeeeeeeCCeEEEEEecc------c------ccCCCChhHeeeecccccc
Confidence 3356666665 67889999999999999999999888752 1 2367999999999997643
No 238
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.44 E-value=4e-07 Score=90.76 Aligned_cols=98 Identities=21% Similarity=0.310 Sum_probs=65.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 168 (356)
...+|+|||||++|+++|+.|++. |++|+|+|+...+||.... +++. + ..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~gG~l~~---------------------gip~-----~---~~ 188 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKAGGLLRY---------------------GIPE-----F---RL 188 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCCCcEeec---------------------cCCC-----c---cC
Confidence 357999999999999999999999 9999999999877652211 1110 0 01
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
..++...+.+.+. +.|++++.++.+... +... ...+.+|.||+|||..
T Consensus 189 ~~~~~~~~~~~l~-~~gv~~~~~~~v~~~---------v~~~---------------~~~~~~d~vvlAtGa~ 236 (457)
T PRK11749 189 PKDIVDREVERLL-KLGVEIRTNTEVGRD---------ITLD---------------ELRAGYDAVFIGTGAG 236 (457)
T ss_pred CHHHHHHHHHHHH-HcCCEEEeCCEECCc---------cCHH---------------HHHhhCCEEEEccCCC
Confidence 2344444455554 568999988765210 1111 1226789999999975
No 239
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.43 E-value=3.1e-07 Score=91.33 Aligned_cols=40 Identities=43% Similarity=0.737 Sum_probs=36.2
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
..++|+|||+|++|+++|+.|++. |++|+|+|+...+||.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~GG~ 171 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKPGGV 171 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcE
Confidence 357999999999999999999999 9999999998777653
No 240
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.43 E-value=1.6e-06 Score=86.05 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=68.3
Q ss_pred cEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 92 DVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
+|||||||++|+.+|..|.+. ++.+|+|+|+.+..+ +....++. . +. +. .....
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~---~~~~~lp~-~---------~~--~~----------~~~~~ 57 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS---FANCALPY-Y---------IG--EV----------VEDRK 57 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc---cccCCcch-h---------hc--Cc----------cCCHH
Confidence 699999999999999999873 368999999987543 11100000 0 00 00 00000
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.......+.+.++.|++++.+++|++|..++..+.. ... . .++..++.+|++|+|||+..
T Consensus 58 ~~~~~~~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~-~~~--------~---~~~~~~~~yd~lviAtGs~~ 117 (438)
T PRK13512 58 YALAYTPEKFYDRKQITVKTYHEVIAINDERQTVTV-LNR--------K---TNEQFEESYDKLILSPGASA 117 (438)
T ss_pred HcccCCHHHHHHhCCCEEEeCCEEEEEECCCCEEEE-EEC--------C---CCcEEeeecCEEEECCCCCC
Confidence 111101122333569999999999999877654332 111 0 01234578999999999765
No 241
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.42 E-value=3.5e-07 Score=98.97 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=54.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
..+|+|||||+|||++|+.|++. |++|+|+|+...+||-.. +|++.. ...
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~GG~l~---------------------~gip~~--------rl~ 479 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVVGGVLQ---------------------YGIPSF--------RLP 479 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCcceee---------------------ccCCcc--------CCC
Confidence 47999999999999999999999 999999999987765221 122211 123
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeE
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVA 193 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~ 193 (356)
.++.....+.+. +.|+++++++.
T Consensus 480 ~e~~~~~~~~l~-~~Gv~~~~~~~ 502 (1006)
T PRK12775 480 RDIIDREVQRLV-DIGVKIETNKV 502 (1006)
T ss_pred HHHHHHHHHHHH-HCCCEEEeCCc
Confidence 455556666665 57999999864
No 242
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.39 E-value=5.2e-07 Score=95.39 Aligned_cols=40 Identities=35% Similarity=0.537 Sum_probs=35.9
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
...+|+|||||+||+++|+.|++. |++|+|+|+...+||.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~GG~ 469 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEIGGV 469 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCCCe
Confidence 357999999999999999999999 9999999998777653
No 243
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.39 E-value=6.1e-07 Score=89.79 Aligned_cols=39 Identities=33% Similarity=0.607 Sum_probs=35.7
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
..++|+|||+|++|+++|..|++. |++|+|+|+...+||
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~GG 180 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRIGG 180 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCCCc
Confidence 347999999999999999999999 999999999987765
No 244
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.37 E-value=3e-06 Score=83.28 Aligned_cols=37 Identities=35% Similarity=0.682 Sum_probs=34.1
Q ss_pred cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccCCCCCc
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGG 129 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~~~Gg~ 129 (356)
.++|||||++||++|++|.++ + ..|+|+|+.+.+||-
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVGGL 40 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCCce
Confidence 489999999999999999997 6 999999999888864
No 245
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.36 E-value=7.1e-06 Score=78.17 Aligned_cols=139 Identities=20% Similarity=0.324 Sum_probs=81.6
Q ss_pred cccEEEECCCHHHHHHHHHhhcCC---CCeEEEEeccCCCCCccccCCccchhhhcc--chHHHHHHHhCC---------
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNP---NIQIAIIEQSVSPGGGAWLGGQLFSAMVVR--KPAHIFLDELGI--------- 155 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~---G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~--~~~~~~l~~~G~--------- 155 (356)
.|||+|||||++|++.|..|..+| .+||+|+|....+.-+.|.....+...+.. ...+.+++.+|.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~~R~ 115 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFHDRY 115 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhhhcc
Confidence 599999999999999999998754 679999998854332334332222222111 122333333222
Q ss_pred -C----------------cccc--C-CeEEEechHHHHHHHH--HHHHcCCCcEEEcCeEEEEEEEe-------CCeEEE
Q 018414 156 -D----------------YDEQ--D-NYVVIKHAALFTSTIM--SKLLARPNVKLFNAVAAEDLIVK-------GGRVGG 206 (356)
Q Consensus 156 -~----------------~~~~--~-~~~~~~~~~~~~~~l~--~~~~~~~gv~i~~~~~v~~i~~~-------~~~v~g 206 (356)
+ |+.. . +...+.+...+...|+ +...+..++++++..++.++..- ++-+.-
T Consensus 116 ~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~ 195 (481)
T KOG3855|consen 116 QKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGMWFH 195 (481)
T ss_pred ccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcceEE
Confidence 0 1110 0 1112223344555566 33344678999999988887652 233443
Q ss_pred EEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 207 VVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 207 v~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+... ++..+..|.+|.|+|..+
T Consensus 196 i~l~--------------dg~~~~~~LLigAdg~Ns 217 (481)
T KOG3855|consen 196 ITLT--------------DGINFATDLLIGADGFNS 217 (481)
T ss_pred EEec--------------cCceeeeceeeccccccc
Confidence 4443 246799999999999554
No 246
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.35 E-value=9.3e-06 Score=75.61 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=32.3
Q ss_pred CcccEEEECCCHHHHHHHHHhhc---CCCCeEEEEeccCC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVS 125 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~---~~G~~V~llEk~~~ 125 (356)
.++||+|||||..|++.|+.|.+ ..|++|+|+|+...
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 36899999999999999999976 23799999999864
No 247
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.35 E-value=2.2e-06 Score=83.82 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=65.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 168 (356)
.+|||||||+||+.||..|++. +. +|+|+++..... +....+.. .++. +.... .. ...
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~-~~~~~I~li~~e~~~~---y~r~~l~~---------~~~~--~~~~~---~~--~~~ 63 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQ-GFTGELHLFSDERHLP---YERPPLSK---------SMLL--EDSPQ---LQ--QVL 63 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhh-CCCCCEEEeCCCCCCC---CCCCCCCH---------HHHC--CCCcc---cc--ccC
Confidence 5899999999999999999986 54 799999875432 10000000 0110 00000 00 000
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.. +.+ .+.+++++.++.|+.+..++..+ .+. +..++.+|++|+|||+..
T Consensus 64 ~~-------~~~-~~~~i~~~~g~~V~~id~~~~~v---~~~--------------~g~~~~yd~LViATGs~~ 112 (396)
T PRK09754 64 PA-------NWW-QENNVHLHSGVTIKTLGRDTREL---VLT--------------NGESWHWDQLFIATGAAA 112 (396)
T ss_pred CH-------HHH-HHCCCEEEcCCEEEEEECCCCEE---EEC--------------CCCEEEcCEEEEccCCCC
Confidence 11 112 24699999999998887665432 222 135799999999999765
No 248
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.34 E-value=1.1e-06 Score=87.95 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=66.6
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEec
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKH 168 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~ 168 (356)
...+|+|||+|++|+++|..|++. |++|+|+|+.+.+||-.. +|++.. ..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~gG~l~---------------------~gip~~--------~~ 189 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEIGGLLT---------------------FGIPSF--------KL 189 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCceee---------------------ecCccc--------cC
Confidence 347899999999999999999999 999999999987765221 122110 11
Q ss_pred hHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 169 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 169 ~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..++.....+.+. +.|++++.++.+..- +... .....+|.||+|||...
T Consensus 190 ~~~~~~~~~~~~~-~~Gv~~~~~~~v~~~---------~~~~---------------~~~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 190 DKAVLSRRREIFT-AMGIEFHLNCEVGRD---------ISLD---------------DLLEDYDAVFLGVGTYR 238 (467)
T ss_pred CHHHHHHHHHHHH-HCCCEEECCCEeCCc---------cCHH---------------HHHhcCCEEEEEeCCCC
Confidence 1334444445554 679999999865210 0111 12246899999999875
No 249
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.34 E-value=1e-06 Score=85.25 Aligned_cols=82 Identities=24% Similarity=0.457 Sum_probs=59.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
.-+++|||||++|+.||+.|++. |++|.|+||.+.+||.. .+++-.|...+ -+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiGGrm--------------------ak~~k~FP~~d------cs 176 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIGGRM--------------------AKLNKTFPTND------CS 176 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCcccccH--------------------HhhhccCCCcc------cc
Confidence 45899999999999999999999 99999999999988732 22222222221 11
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLI 198 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~ 198 (356)
--....++....+++++++++.++|+++.
T Consensus 177 ~C~LaP~m~~v~~hp~i~l~TyaeV~ev~ 205 (622)
T COG1148 177 ICILAPKMVEVSNHPNIELITYAEVEEVS 205 (622)
T ss_pred hhhccchhhhhccCCceeeeeeeeeeeec
Confidence 11223345555668899999999999864
No 250
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.33 E-value=5.5e-06 Score=80.45 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=67.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
.+|||||||+||+.+|..|.+. +..+|+||++....- ++... +... +. .+ ...
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~---y~~~~-l~~~---------~~-~~------------~~~ 56 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE---YNKPD-LSHV---------FS-QG------------QRA 56 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC---cCcCc-CcHH---------Hh-CC------------CCH
Confidence 4899999999999999999873 367899999875311 11100 0000 00 00 011
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.++.....+.+.++.|++++.+++|+.+..++..+ .+. ...+.+|+||+|||...
T Consensus 57 ~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v---~~~---------------~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 57 DDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVV---KSQ---------------GNQWQYDKLVLATGASA 111 (377)
T ss_pred HHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEE---EEC---------------CeEEeCCEEEECCCCCC
Confidence 22221112233335699999999999987665432 222 35799999999999764
No 251
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.31 E-value=2.7e-06 Score=86.50 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=44.3
Q ss_pred HHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 176 IMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 176 l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++..+.+..|+++++++.|+.|+.++++.+++.+... +.+ . ....+.++.||+|+|+..
T Consensus 208 ~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~------~~~-~-~~~~~a~~~viL~AGai~ 266 (542)
T COG2303 208 YLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIG------DGG-T-IETAVAAREVVLAAGAIN 266 (542)
T ss_pred cchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeC------CCC-c-eEEEecCceEEEeccccC
Confidence 3444566789999999999999999999999987521 100 0 135577889999999876
No 252
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.28 E-value=1.3e-06 Score=90.82 Aligned_cols=38 Identities=37% Similarity=0.768 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
..+|+|||+|++||++|+.|++. |++|+|+|+...+||
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~GG 364 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEIGG 364 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCc
Confidence 57999999999999999999999 999999999887775
No 253
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.28 E-value=2.1e-06 Score=82.65 Aligned_cols=38 Identities=32% Similarity=0.557 Sum_probs=34.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
..+|+|||+|++|+.+|..|++. |++|+++|+.+.+|+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~gg 55 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPGG 55 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCCc
Confidence 36899999999999999999999 999999999887765
No 254
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=98.27 E-value=2.7e-06 Score=81.74 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
.+...+.+.+. +.|.+|++...|.+|..+++++.||...+ +.++++|.||--++-+
T Consensus 265 avs~aia~~~~-~~GaeI~tka~Vq~Illd~gka~GV~L~d--------------G~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 265 AVSFAIAEGAK-RAGAEIFTKATVQSILLDSGKAVGVRLAD--------------GTEVRSKIVVSNATPW 320 (561)
T ss_pred HHHHHHHHHHH-hccceeeehhhhhheeccCCeEEEEEecC--------------CcEEEeeeeecCCchH
Confidence 34455555554 78999999999999999999999999974 4789999998777744
No 255
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.24 E-value=6.4e-06 Score=80.35 Aligned_cols=105 Identities=18% Similarity=0.244 Sum_probs=62.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhc-----------cc-hHHHHHHHhC-CCc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVV-----------RK-PAHIFLDELG-IDY 157 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~-----------~~-~~~~~l~~~G-~~~ 157 (356)
.||+|||||++|+.+|+.|++. |++|+|+|+.+........... +..+.. .. ...+.++.+| +.+
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~~s~a~~~~~-~~ervca~Slgs~~ll~a~Gll~~em~~lgsl~~ 80 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVKKTPAHHTDG-FAELVCSNSFRSDSLTNAVGLLKEEMRRLGSLIM 80 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCccCcccccCcc-ccccccchhhhhhhHHhcCCchHHHHHHhcchhe
Confidence 5999999999999999999999 9999999987654321110000 000000 00 0112333333 212
Q ss_pred ccc------CCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414 158 DEQ------DNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198 (356)
Q Consensus 158 ~~~------~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~ 198 (356)
... ...........+.+.|.+.+.+.++++++ ..+|+++.
T Consensus 81 ~aad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 81 EAADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred ecccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 111 11123344555888888888877899988 44666663
No 256
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.24 E-value=3.7e-06 Score=84.08 Aligned_cols=37 Identities=41% Similarity=0.580 Sum_probs=34.0
Q ss_pred ccEEEECCCHHHHHHHHHhhc--CCCCeEEEEeccCCCCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSK--NPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~--~~G~~V~llEk~~~~Gg 128 (356)
.+|+|||+||||++||+.|++ . |++|+|+|+.+.+||
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~pgG 65 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTPFG 65 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCCcc
Confidence 589999999999999999986 6 999999999988775
No 257
>PLN02268 probable polyamine oxidase
Probab=98.23 E-value=2.1e-06 Score=84.88 Aligned_cols=40 Identities=28% Similarity=0.536 Sum_probs=37.4
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcccc
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWL 132 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~ 132 (356)
+|+|||||++||+||+.|.+. |++|+|+|+.+.+||..+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCCceeee
Confidence 799999999999999999998 9999999999999987653
No 258
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.23 E-value=1.8e-06 Score=89.77 Aligned_cols=38 Identities=34% Similarity=0.678 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
..+|+|||+|++|+++|+.|++. |++|+|+|+...+||
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~GG 230 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQAGG 230 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCc
Confidence 47999999999999999999999 999999999987765
No 259
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.21 E-value=2.6e-06 Score=85.55 Aligned_cols=38 Identities=34% Similarity=0.590 Sum_probs=35.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
..+|+|||+|++|+++|..|++. |++|+|+|+...+||
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~gG 180 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRCGG 180 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCCCc
Confidence 46999999999999999999999 999999999987765
No 260
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.21 E-value=1.9e-05 Score=78.00 Aligned_cols=116 Identities=18% Similarity=0.205 Sum_probs=68.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
+.+|||||||.+|+.+|..|.+. +.+|+|||+.+..- +..+ +-.... +. ...
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~~---------~~~~---------l~~~~~-----g~----~~~ 61 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHML---------FTPL---------LPQTTT-----GT----LEF 61 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCcc---------hhhh---------HHHhcc-----cC----CCh
Confidence 47899999999999999999776 79999999876321 1000 000000 00 011
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..+...+...+ +..+++++.+ +|++|..++..+...... .......+..++.+|++|+|||...
T Consensus 62 ~~~~~~~~~~~-~~~~~~~i~~-~V~~Id~~~~~v~~~~~~-------~~~~~~~~g~~i~yD~LViAtGs~~ 125 (424)
T PTZ00318 62 RSICEPVRPAL-AKLPNRYLRA-VVYDVDFEEKRVKCGVVS-------KSNNANVNTFSVPYDKLVVAHGARP 125 (424)
T ss_pred HHhHHHHHHHh-ccCCeEEEEE-EEEEEEcCCCEEEEeccc-------ccccccCCceEecCCEEEECCCccc
Confidence 22222333333 3567888765 899998777654321100 0000001246799999999999864
No 261
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.20 E-value=3.4e-06 Score=89.26 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
...|+|||+||||+++|+.|++. |++|+|+|+....|+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~~i~gl 420 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGLKITLL 420 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCeEEEEcccccccc
Confidence 46899999999999999999999 999999999765544
No 262
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.19 E-value=2.7e-05 Score=77.99 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=72.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||||.+|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~il~~--------------------------------------~~~ 221 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRILPT--------------------------------------EDA 221 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCccCCc--------------------------------------CCH
Confidence 4899999999999999999999 9999999988642100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.+...+.+.+. +.|++++.+++++++..+ ++++..+...+ ++..++.+|.||+|+|....
T Consensus 222 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~------------g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 222 ELSKEVARLLK-KLGVRVVTGAKVLGLTLKKDGGVLIVAEHN------------GEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred HHHHHHHHHHH-hcCCEEEeCcEEEEEEEecCCCEEEEEEeC------------CceEEEEeCEEEEeeCCccC
Confidence 33344455554 679999999999999752 34443333221 12357999999999996653
No 263
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.18 E-value=1.8e-06 Score=86.48 Aligned_cols=40 Identities=35% Similarity=0.559 Sum_probs=37.6
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
..+|||||||++||+||.+|.+. |.+|+|+|..+.+||..
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvGGRI 54 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVGGRI 54 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcCcee
Confidence 57999999999999999999999 99999999999999764
No 264
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.18 E-value=2.7e-05 Score=75.66 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=70.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
.+|+|||+|..|+.+|..|++. |.+|+++++.+.+.... ...
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~ 183 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAASLLASL-------------------------------------MPP 183 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCcccchh-------------------------------------CCH
Confidence 4799999999999999999999 99999999875421100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.....+.+.+. +.|+++++++.++++..+++.+ .+... +..++.+|.||+|+|...
T Consensus 184 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~-~v~~~--------------~g~~i~~D~vI~a~G~~p 239 (377)
T PRK04965 184 EVSSRLQHRLT-EMGVHLLLKSQLQGLEKTDSGI-RATLD--------------SGRSIEVDAVIAAAGLRP 239 (377)
T ss_pred HHHHHHHHHHH-hCCCEEEECCeEEEEEccCCEE-EEEEc--------------CCcEEECCEEEECcCCCc
Confidence 22334444554 6799999999999998665443 23332 236799999999999554
No 265
>PRK07208 hypothetical protein; Provisional
Probab=98.18 E-value=1.9e-06 Score=86.30 Aligned_cols=40 Identities=40% Similarity=0.688 Sum_probs=37.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
..||+|||||++||++|+.|+++ |++|+|+|+...+||.+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~GG~~ 43 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVGGIS 43 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCCcee
Confidence 47999999999999999999999 99999999999998754
No 266
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.16 E-value=3.6e-05 Score=76.80 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=72.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
.+|+|||+|.+|+.+|..|++. |.+|+++|+.+.+... ...
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~ 211 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLDRILPG--------------------------------------EDA 211 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCCCCCC--------------------------------------CCH
Confidence 4899999999999999999999 9999999988642100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.+...+.+.+. +.|++++.+++++++..+++.+. +...+ ++..++.+|.||+|+|....
T Consensus 212 ~~~~~~~~~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~------------g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 212 EVSKVVAKALK-KKGVKILTNTKVTAVEKNDDQVV-YENKG------------GETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHH-HcCCEEEeCCEEEEEEEeCCEEE-EEEeC------------CcEEEEEeCEEEEecCCccc
Confidence 23334455554 56999999999999987766554 32221 11257999999999996653
No 267
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.16 E-value=2.5e-05 Score=76.39 Aligned_cols=97 Identities=22% Similarity=0.365 Sum_probs=69.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+.... ...
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~l~~~-------------------------------------~~~ 186 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAATVMGRN-------------------------------------APP 186 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcchhhh-------------------------------------cCH
Confidence 4799999999999999999999 99999999876432100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.+.+.+.+.+. +.|++++++++++++.. ++.+ .+.+. +..++.+|.||+|+|...
T Consensus 187 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~-~~~~-~v~l~--------------~g~~i~aD~Vv~a~G~~p 241 (396)
T PRK09754 187 PVQRYLLQRHQ-QAGVRILLNNAIEHVVD-GEKV-ELTLQ--------------SGETLQADVVIYGIGISA 241 (396)
T ss_pred HHHHHHHHHHH-HCCCEEEeCCeeEEEEc-CCEE-EEEEC--------------CCCEEECCEEEECCCCCh
Confidence 23334455554 67999999999999865 3333 23332 135799999999999553
No 268
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.14 E-value=2.7e-06 Score=82.39 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=36.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
+||+|||||++|+++|+.|++. |.+|+|+|+...+||.+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iGG~~ 40 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIGGNC 40 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCCCce
Confidence 7999999999999999999998 99999999998888765
No 269
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=3e-06 Score=78.36 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=38.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~ 131 (356)
+|++|||+|.+|+.+|..|++. |.+|+||||++.+||+|+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGNaY 41 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGNAY 41 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCccc
Confidence 7999999999999999999999 999999999999999985
No 270
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.12 E-value=3.9e-05 Score=76.06 Aligned_cols=97 Identities=12% Similarity=0.187 Sum_probs=69.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|.+|+.+|..|++. |.+|+++|+.+.+... ...
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~ 198 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTILPR--------------------------------------EEP 198 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCccCCC--------------------------------------CCH
Confidence 4799999999999999999998 9999999997643110 002
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++++++++++..+++.+. +.. +..++.+|.||+|+|....
T Consensus 199 ~~~~~~~~~l~-~~GI~i~~~~~V~~i~~~~~~v~-v~~---------------~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 199 SVAALAKQYME-EDGITFLLNAHTTEVKNDGDQVL-VVT---------------EDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHH-HcCCEEEcCCEEEEEEecCCEEE-EEE---------------CCeEEEcCEEEEeeCCCCC
Confidence 22233334443 67999999999999976555432 221 1357999999999996654
No 271
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.12 E-value=4.8e-06 Score=86.47 Aligned_cols=38 Identities=37% Similarity=0.722 Sum_probs=35.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
..+|+|||+|++|+++|+.|++. |++|+|+|+...+||
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~GG 347 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEIGG 347 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCCCC
Confidence 57899999999999999999999 999999999987765
No 272
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.11 E-value=5.5e-05 Score=75.52 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=71.9
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||+|..|+.+|..|++. |.+|+++|+.+.+... ...
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~ 213 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRILPG--------------------------------------EDK 213 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCcCCc--------------------------------------CCH
Confidence 4799999999999999999999 9999999987643100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++++++++++..+++.+. +...+ .++..++.+|.||+|+|....
T Consensus 214 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~v~-v~~~~-----------gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 214 EISKLAERALK-KRGIKIKTGAKAKKVEQTDDGVT-VTLED-----------GGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred HHHHHHHHHHH-HcCCEEEeCCEEEEEEEeCCEEE-EEEEe-----------CCeeEEEEeCEEEEeeCCccC
Confidence 33334444454 67999999999999987666443 32221 012357999999999996643
No 273
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.10 E-value=5.2e-05 Score=75.66 Aligned_cols=99 Identities=19% Similarity=0.193 Sum_probs=70.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+++|||+|.+|+.+|..+++. |.+|+|+|+.+.+.. ....
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~ll~--------------------------------------~~d~ 211 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQLLP--------------------------------------GEDE 211 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCc--------------------------------------cccH
Confidence 4799999999999999999999 999999998754210 0012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++.+.+.+.+. +.|++++++++++++..+++.+. +... ++..++.+|.||+|+|....
T Consensus 212 e~~~~l~~~L~-~~GI~i~~~~~V~~i~~~~~~v~-~~~~-------------g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 212 DIAHILREKLE-NDGVKIFTGAALKGLNSYKKQAL-FEYE-------------GSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHH-HCCCEEEECCEEEEEEEcCCEEE-EEEC-------------CceEEEEeCEEEEecCCccC
Confidence 34445555555 57999999999999876544321 2111 12357999999999996543
No 274
>PRK06370 mercuric reductase; Validated
Probab=98.09 E-value=6.7e-05 Score=74.94 Aligned_cols=101 Identities=13% Similarity=0.165 Sum_probs=71.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+|+|||+|..|+.+|..|++. |.+|+++|+.+.+... ...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~~~ 212 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRLLPR--------------------------------------EDE 212 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCCCcc--------------------------------------cCH
Confidence 4799999999999999999999 9999999987643210 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++++++++++..+++.+ .+.... . ++..++.+|.||+|+|....
T Consensus 213 ~~~~~l~~~l~-~~GV~i~~~~~V~~i~~~~~~~-~v~~~~-------~----~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 213 DVAAAVREILE-REGIDVRLNAECIRVERDGDGI-AVGLDC-------N----GGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEE-EEEEEe-------C----CCceEEEeCEEEECcCCCcC
Confidence 23334444454 6799999999999998765543 222210 0 12357999999999996543
No 275
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.09 E-value=6.4e-05 Score=75.10 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=70.9
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+|+|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 207 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSDRLLPR--------------------------------------EEP 207 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCcCCCc--------------------------------------cCH
Confidence 4799999999999999999999 9999999987542100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++++++|+++..+++.+ .+.... .++..++.+|.||+|+|....
T Consensus 208 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~~-~v~~~~-----------~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 208 EISAAVEEALA-EEGIEVVTSAQVKAVSVRGGGK-IITVEK-----------PGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred HHHHHHHHHHH-HcCCEEEcCcEEEEEEEcCCEE-EEEEEe-----------CCCceEEEeCEEEEeECCCcC
Confidence 23334444444 6799999999999998765432 233221 012367999999999996543
No 276
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.08 E-value=5.4e-05 Score=75.51 Aligned_cols=98 Identities=14% Similarity=0.152 Sum_probs=72.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 216 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRLLSF--------------------------------------LDD 216 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCcCCc--------------------------------------CCH
Confidence 5799999999999999999999 9999999987643210 013
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++.++.++++..+++.+. +... +..++.+|.||+|+|....
T Consensus 217 ~~~~~l~~~l~-~~gI~v~~~~~v~~i~~~~~~~~-v~~~--------------~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 217 EISDALSYHLR-DSGVTIRHNEEVEKVEGGDDGVI-VHLK--------------SGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHH-HcCCEEEECCEEEEEEEeCCeEE-EEEC--------------CCCEEEeCEEEEeecCCcc
Confidence 34445555554 66999999999999987655433 2232 1256999999999996543
No 277
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.08 E-value=6.8e-05 Score=75.00 Aligned_cols=102 Identities=22% Similarity=0.307 Sum_probs=71.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~l~~--------------------------------------~d~ 213 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLDRALPN--------------------------------------EDA 213 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCcCCc--------------------------------------cCH
Confidence 4799999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++++++|+++..+++.+. +.... . +++..++.+|.||+|+|....
T Consensus 214 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~~-v~~~~-------~---~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 214 EVSKEIAKQYK-KLGVKILTGTKVESIDDNGSKVT-VTVSK-------K---DGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred HHHHHHHHHHH-HCCCEEEECCEEEEEEEeCCeEE-EEEEe-------c---CCCeEEEEeCEEEECcCcccC
Confidence 33444555554 67999999999999976554432 22210 0 112357999999999996543
No 278
>PRK06116 glutathione reductase; Validated
Probab=98.08 E-value=5.6e-05 Score=75.24 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=71.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|..|+.+|..|++. |.+|+++++.+.+.. ....
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~l~--------------------------------------~~~~ 208 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAPLR--------------------------------------GFDP 208 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCcc--------------------------------------ccCH
Confidence 4799999999999999999999 999999998753210 0012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++++++|+++..+++....+.+.+ +.++.+|.||+|+|....
T Consensus 209 ~~~~~l~~~L~-~~GV~i~~~~~V~~i~~~~~g~~~v~~~~--------------g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 209 DIRETLVEEME-KKGIRLHTNAVPKAVEKNADGSLTLTLED--------------GETLTVDCLIWAIGREPN 266 (450)
T ss_pred HHHHHHHHHHH-HCCcEEECCCEEEEEEEcCCceEEEEEcC--------------CcEEEeCEEEEeeCCCcC
Confidence 33445555554 67999999999999987644322233321 356899999999996543
No 279
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.08 E-value=3.6e-05 Score=72.98 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=49.0
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+...+...|.+.+. +.|++++.+++|+++..+++++.+|.+. ..+++||.||+|+|.+..
T Consensus 135 ~p~~l~~~l~~~~~-~~g~~~~~~~~v~~i~~~~~~~~~v~~~---------------~g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 135 DPRALLKALEKALE-KLGVEIIEHTEVQHIEIRGEKVTAIVTP---------------SGDVQADQVVLAAGAWAG 194 (337)
T ss_pred ChHHHHHHHHHHHH-HcCCEEEccceEEEEEeeCCEEEEEEcC---------------CCEEECCEEEEcCChhhh
Confidence 45677788888776 6799999999999999888888877764 247999999999997764
No 280
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.07 E-value=6.8e-06 Score=81.43 Aligned_cols=37 Identities=30% Similarity=0.568 Sum_probs=33.3
Q ss_pred ccEEEECCCHHHHHHHHHhh-cCCCCeEEEEeccCCCCC
Q 018414 91 TDVVVVGAGSAGLSCAYELS-KNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La-~~~G~~V~llEk~~~~Gg 128 (356)
..|+|||+||||+.+|.+|. +. |++|.|+||.+.+||
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~~-g~~VtlfEk~p~pgG 77 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHE-RVKVDIFEKLPNPYG 77 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc-CCeEEEEecCCCCcc
Confidence 57999999999999999765 56 999999999998876
No 281
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.07 E-value=3.6e-06 Score=83.35 Aligned_cols=38 Identities=39% Similarity=0.672 Sum_probs=35.1
Q ss_pred cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccCCCCCcc
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSVSPGGGA 130 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~~~Gg~~ 130 (356)
+|+|||||++||+||+.|+++ | ++|+|+|+...+||..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~GGr~ 41 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLGGKI 41 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCcceE
Confidence 699999999999999999997 6 8999999999998754
No 282
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.06 E-value=5.6e-05 Score=75.00 Aligned_cols=97 Identities=25% Similarity=0.286 Sum_probs=70.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|..|+.+|..|.+. |.+|+++++...+-... ...
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~l~~~-------------------------------------~~~ 191 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDRILPDS-------------------------------------FDK 191 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCcccCchh-------------------------------------cCH
Confidence 5799999999999999999999 99999999875321000 013
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++.+.+.+.+. +.|++++++++++++.. ++++..+..+ ..++.+|.||+|+|...
T Consensus 192 ~~~~~l~~~l~-~~gI~v~~~~~v~~i~~-~~~~~~v~~~---------------~~~i~~d~vi~a~G~~p 246 (444)
T PRK09564 192 EITDVMEEELR-ENGVELHLNEFVKSLIG-EDKVEGVVTD---------------KGEYEADVVIVATGVKP 246 (444)
T ss_pred HHHHHHHHHHH-HCCCEEEcCCEEEEEec-CCcEEEEEeC---------------CCEEEcCEEEECcCCCc
Confidence 34445555554 67999999999999954 4444444432 24699999999999543
No 283
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.06 E-value=2.6e-05 Score=72.90 Aligned_cols=38 Identities=32% Similarity=0.587 Sum_probs=34.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
..+|.|||+|.+||+||+.|+++ .+|+|+|.+...||.
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~rlGGh 45 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRRLGGH 45 (447)
T ss_pred CcceEEEcccchhhhhHHhhhcc--cceEEEeccccccCc
Confidence 46899999999999999999986 899999999888754
No 284
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.06 E-value=7.9e-05 Score=73.84 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=75.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||||..|+..|..+++. |.+|+|||+.+.+-. ....
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iLp--------------------------------------~~D~ 214 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRILP--------------------------------------GEDP 214 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCC--------------------------------------cCCH
Confidence 4699999999999999999999 999999999875321 0125
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++.+.+.+.+. +.|++++++++++.+...++. ..+..++ ++..++++|.|++|+|....
T Consensus 215 ei~~~~~~~l~-~~gv~i~~~~~v~~~~~~~~~-v~v~~~~------------g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 215 EISKELTKQLE-KGGVKILLNTKVTAVEKKDDG-VLVTLED------------GEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred HHHHHHHHHHH-hCCeEEEccceEEEEEecCCe-EEEEEec------------CCCCEEEeeEEEEccCCccC
Confidence 56666666666 478999999999999887665 3344432 12237899999999996543
No 285
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.05 E-value=8e-05 Score=74.51 Aligned_cols=102 Identities=17% Similarity=0.173 Sum_probs=71.3
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|..|+..|..+++. |.+|+|+|+.+.+... ...
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~~il~~--------------------------------------~d~ 215 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLDRICPG--------------------------------------TDT 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCCCCCC--------------------------------------CCH
Confidence 4799999999999999999999 9999999987543110 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++...+.+.+. +.|++++++++++++..+++.+. +.... .+ .++...+.+|.||+|+|...
T Consensus 216 ~~~~~l~~~l~-~~gV~i~~~~~V~~i~~~~~~v~-v~~~~------~~---~g~~~~i~~D~vi~a~G~~p 276 (466)
T PRK06115 216 ETAKTLQKALT-KQGMKFKLGSKVTGATAGADGVS-LTLEP------AA---GGAAETLQADYVLVAIGRRP 276 (466)
T ss_pred HHHHHHHHHHH-hcCCEEEECcEEEEEEEcCCeEE-EEEEE------cC---CCceeEEEeCEEEEccCCcc
Confidence 23344555554 67999999999999976554432 22210 00 11346799999999999654
No 286
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=8.2e-05 Score=72.73 Aligned_cols=139 Identities=22% Similarity=0.225 Sum_probs=77.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCC--CCeEEEEeccCCCCCccccCCccc--------hhhhcc-----chHHHHHHHhCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNP--NIQIAIIEQSVSPGGGAWLGGQLF--------SAMVVR-----KPAHIFLDELGI 155 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~--G~~V~llEk~~~~Gg~~~~~g~~~--------~~~~~~-----~~~~~~l~~~G~ 155 (356)
++|+|||+|++|+.+|.+|.+.+ ..++.|+|+....|.+.-...... ..+... ....+||...+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 68999999999999999998842 334999999988876542211111 111112 135688887633
Q ss_pred Ccccc------CC-eEEEechHHHHHHHHHHHHcCC--C-cEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCC
Q 018414 156 DYDEQ------DN-YVVIKHAALFTSTIMSKLLARP--N-VKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCM 224 (356)
Q Consensus 156 ~~~~~------~~-~~~~~~~~~~~~~l~~~~~~~~--g-v~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g 224 (356)
.+... +. |+...--.+|....++.+.++. . +.++. .+++++..++ +...-+...
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~-------------- 146 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTA-------------- 146 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecC--------------
Confidence 33211 11 2211112334433344443322 1 44333 3666666553 333333332
Q ss_pred CCeEEEcCEEEEcCCCCCCC
Q 018414 225 DPNVMEAKVVVSSCGHDGPF 244 (356)
Q Consensus 225 ~~~~i~Ak~VI~AtGg~~~~ 244 (356)
++....|+.+|+|||+..+.
T Consensus 147 ~g~~~~ad~~Vlatgh~~~~ 166 (474)
T COG4529 147 DGPSEIADIIVLATGHSAPP 166 (474)
T ss_pred CCCeeeeeEEEEeccCCCCC
Confidence 24678899999999986643
No 287
>PRK13984 putative oxidoreductase; Provisional
Probab=98.03 E-value=9.2e-06 Score=83.89 Aligned_cols=39 Identities=38% Similarity=0.694 Sum_probs=35.6
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
...+|+|||+|++|+++|..|++. |++|+|+|+...+||
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~gG 320 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKPGG 320 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCc
Confidence 356899999999999999999999 999999999987765
No 288
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.4e-05 Score=68.87 Aligned_cols=116 Identities=15% Similarity=0.197 Sum_probs=76.9
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
..|+|||+||++-.+|+++++. .+|-+|+|-.. .++ .-.+|++....- .+.-+.|+--....
T Consensus 9 e~v~IiGSGPAa~tAAiYaara-elkPllfEG~~-~~~-i~pGGQLtTTT~---------------veNfPGFPdgi~G~ 70 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARA-ELKPLLFEGMM-ANG-IAPGGQLTTTTD---------------VENFPGFPDGITGP 70 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhc-ccCceEEeeee-ccC-cCCCceeeeeec---------------cccCCCCCcccccH
Confidence 5899999999999999999999 89999999653 221 122333322110 01112333334557
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++++.+.++.. +.|.+++.+ .|.++..... ...+.+. ...+.++.||+|||+..
T Consensus 71 ~l~d~mrkqs~-r~Gt~i~tE-tVskv~~ssk-pF~l~td---------------~~~v~~~avI~atGAsA 124 (322)
T KOG0404|consen 71 ELMDKMRKQSE-RFGTEIITE-TVSKVDLSSK-PFKLWTD---------------ARPVTADAVILATGASA 124 (322)
T ss_pred HHHHHHHHHHH-hhcceeeee-ehhhccccCC-CeEEEec---------------CCceeeeeEEEecccce
Confidence 77777777665 779999888 5777766543 3333332 36789999999999765
No 289
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.02 E-value=3.2e-05 Score=74.63 Aligned_cols=105 Identities=13% Similarity=0.194 Sum_probs=64.6
Q ss_pred cEEEECCCHHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 92 DVVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~--~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
.|||||||++|+.+|.+|.++ ++.+|+|||+....- +. ..+ . .++. | ....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~---~~-~~~-~---------~~~~--g-----------~~~~ 53 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP---YS-GML-P---------GMIA--G-----------HYSL 53 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc---cc-chh-h---------HHHh--e-----------eCCH
Confidence 489999999999999999642 378999999886421 00 000 0 0000 0 0011
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.++...+.+.+ ++.|++++.+ +|+.+..++.. |.+.+ ..++++|++|+|||+..
T Consensus 54 ~~~~~~~~~~~-~~~gv~~~~~-~v~~id~~~~~---V~~~~--------------g~~~~yD~LviAtG~~~ 107 (364)
T TIGR03169 54 DEIRIDLRRLA-RQAGARFVIA-EATGIDPDRRK---VLLAN--------------RPPLSYDVLSLDVGSTT 107 (364)
T ss_pred HHhcccHHHHH-HhcCCEEEEE-EEEEEecccCE---EEECC--------------CCcccccEEEEccCCCC
Confidence 22222222223 3568999876 78888776653 33321 35689999999999765
No 290
>PLN02576 protoporphyrinogen oxidase
Probab=98.02 E-value=6e-06 Score=83.10 Aligned_cols=41 Identities=37% Similarity=0.637 Sum_probs=36.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
++||+|||||++||++|++|+++.|.+|+|+|+...+||.+
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~ 52 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNI 52 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCce
Confidence 47999999999999999999885269999999999998765
No 291
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.02 E-value=9.7e-05 Score=73.59 Aligned_cols=100 Identities=11% Similarity=0.069 Sum_probs=71.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||||..|+..|..|++. |.+|+|+|+.+.+... ...
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~il~~--------------------------------------~d~ 207 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERVLRS--------------------------------------FDS 207 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCCcc--------------------------------------cCH
Confidence 4799999999999999999999 9999999988643210 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++.++.++++..+++....+...+ ....+.+|.||+|+|....
T Consensus 208 ~~~~~~~~~l~-~~gI~i~~~~~v~~i~~~~~~~~~v~~~~-------------g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 208 MISETITEEYE-KEGINVHKLSKPVKVEKTVEGKLVIHFED-------------GKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHH-HcCCEEEcCCEEEEEEEeCCceEEEEECC-------------CcEEEEcCEEEEeeCCCcC
Confidence 33444555554 67999999999999976543322233321 1256999999999996543
No 292
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.99 E-value=0.00014 Score=72.96 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=73.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 224 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL-GAEVTILEALPAFLAA--------------------------------------ADE 224 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCccCCc--------------------------------------CCH
Confidence 4799999999999999999999 9999999987642100 013
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++.+++|+++..+++.+. +...+ . +++..++.+|.||+|+|....
T Consensus 225 ~~~~~~~~~l~-~~gi~i~~~~~v~~i~~~~~~v~-v~~~~------~----~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 225 QVAKEAAKAFT-KQGLDIHLGVKIGEIKTGGKGVS-VAYTD------A----DGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred HHHHHHHHHHH-HcCcEEEeCcEEEEEEEcCCEEE-EEEEe------C----CCceeEEEcCEEEEccCCccC
Confidence 33444555554 57999999999999987665543 33221 0 112357999999999996543
No 293
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.99 E-value=6.4e-05 Score=73.10 Aligned_cols=99 Identities=27% Similarity=0.308 Sum_probs=74.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
.+++|||+|+.|+.+|..|+++ |++|+++|+...+++.... .
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~~~~~-------------------------------------~ 178 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGGQLLD-------------------------------------P 178 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccchhhhh-------------------------------------H
Confidence 6999999999999999999999 9999999999876542210 2
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEE--EEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGG--VVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g--v~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.+...+.+.+. +.|+++++++.+.++...++.... +... ....+.+|.++++.|...
T Consensus 179 ~~~~~~~~~l~-~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~--------------~~~~~~~d~~~~~~g~~p 237 (415)
T COG0446 179 EVAEELAELLE-KYGVELLLGTKVVGVEGKGNTLVVERVVGI--------------DGEEIKADLVIIGPGERP 237 (415)
T ss_pred HHHHHHHHHHH-HCCcEEEeCCceEEEEcccCcceeeEEEEe--------------CCcEEEeeEEEEeecccc
Confidence 23334444443 678999999999999877654433 2222 247799999999999665
No 294
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.98 E-value=1e-05 Score=82.89 Aligned_cols=38 Identities=39% Similarity=0.652 Sum_probs=35.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
..+|+|||+|++||++|+.|++. |++|+|+|+...+||
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~GG 174 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKLGG 174 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCC
Confidence 46899999999999999999999 999999999988775
No 295
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.96 E-value=8.7e-05 Score=75.22 Aligned_cols=98 Identities=20% Similarity=0.348 Sum_probs=71.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+|+|||||..|+.+|..|++. +.+|+++|+.+.+. ..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~l~-----------------------------------------~~ 390 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADELK-----------------------------------------AD 390 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCcCC-----------------------------------------hh
Confidence 4899999999999999999998 99999999764321 00
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..+.+.+.+..|+++++++.++++..+++++.++.+.+ .. .++..++.+|.||+|+|...
T Consensus 391 ---~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~------~~---~~~~~~i~~D~vi~a~G~~P 450 (515)
T TIGR03140 391 ---KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQD------RN---SGEEKQLDLDGVFVQIGLVP 450 (515)
T ss_pred ---HHHHHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEE------CC---CCcEEEEEcCEEEEEeCCcC
Confidence 12333443346999999999999987667777776542 11 12346799999999999554
No 296
>KOG2403 consensus Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]
Probab=97.96 E-value=1.2e-05 Score=79.16 Aligned_cols=191 Identities=23% Similarity=0.269 Sum_probs=100.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC--------CCcc-----------------------ccCCccch
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP--------GGGA-----------------------WLGGQLFS 138 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~--------Gg~~-----------------------~~~g~~~~ 138 (356)
.||.+|||+|.+|+.+|..|++. |.++.++-|.... ||.. |.+..-..
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~-g~~~a~itkl~p~~s~tvaaqGg~nA~l~~m~~d~~~~h~~dtv~~sd~l~dqd~i 133 (642)
T KOG2403|consen 55 TYDAVVVGAGGAGLRAARGLAEL-GEKTAVITKLFPTRSHTVAAQGGINAALGNMGNDNWRWHMYDTVKGSDWLGDQDAI 133 (642)
T ss_pred eceeEEEeccchhhhhhhhhhhc-CceEEEEeccccccccchhhhhhhhhhhccCCCchhhhhhhhccccccccCchhhh
Confidence 38999999999999999999999 9999999885321 1110 11111111
Q ss_pred hhhccc--hHHHHHHHhCCCccccCCe---------------------EE----EechHHHHHHHHHHHHcCCCcEEEcC
Q 018414 139 AMVVRK--PAHIFLDELGIDYDEQDNY---------------------VV----IKHAALFTSTIMSKLLARPNVKLFNA 191 (356)
Q Consensus 139 ~~~~~~--~~~~~l~~~G~~~~~~~~~---------------------~~----~~~~~~~~~~l~~~~~~~~gv~i~~~ 191 (356)
+.+.+. .....|+.+|.+|....+- .. ..-...+...|+...++. +..++..
T Consensus 134 ~ym~~ea~~a~~el~~~g~~fs~~~dg~i~q~~~gg~s~~~gkggq~~r~~~~Ad~tg~~~~~tL~~~~l~~-~~~~f~~ 212 (642)
T KOG2403|consen 134 HYMCREAPKAVIELENYGMPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRACCVADRTGHALLHTLYGQSLRH-NTSFFVE 212 (642)
T ss_pred hHHHhhcchhHHHHHhccCccccccCCcHHHhhhhccccCcccccccccEEEeecccccHHHhhhHHHHhcc-chhhHHH
Confidence 111111 2345666778877643110 00 001234455666665532 4444333
Q ss_pred eEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccchhhhccCccccccccccccccc
Q 018414 192 VAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNS 271 (356)
Q Consensus 192 ~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 271 (356)
.-..+++...+.+.++..-. .+ ++....++++.+|+|+|++|....+......-.+....+....++.+.+
T Consensus 213 yfa~dll~~~g~~~~~va~~------~~---d~~i~~~r~~~ti~a~gg~G~~y~s~t~~~t~TgdG~a~~~ra~~~l~d 283 (642)
T KOG2403|consen 213 YFALDLLMSQGECVGVIALN------LE---DGTIHRFRAKNTILATGGYGRAYFSCTSAHTCTGDGNAMASRAGAPLSD 283 (642)
T ss_pred HHHHHHHHhccCceEEEEEE------ee---cccceeeeeeeeEEEEeccceEEEEeccCeeEccCCCeEEeeccCCCcc
Confidence 33444444444444444321 11 2346789999999999999876554433333333333333333333433
Q ss_pred ccceeeeccccccCceeEeceEEEE
Q 018414 272 AEDAIVRLTREVVPGMIVTGMEVAE 296 (356)
Q Consensus 272 ~~~~~~~~~~e~~~g~~~~~~~~~~ 296 (356)
.+-..+.. .+++..|+.+++
T Consensus 284 ~efvqfhp-----t~i~g~Gclite 303 (642)
T KOG2403|consen 284 MEFVQFHP-----TGIYGAGCLITE 303 (642)
T ss_pred cceeeeee-----ecccccceeeee
Confidence 22222333 455555555544
No 297
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.95 E-value=8.8e-06 Score=81.06 Aligned_cols=40 Identities=35% Similarity=0.635 Sum_probs=36.3
Q ss_pred ccEEEECCCHHHHHHHHHhhcCC---CCeEEEEeccCCCCCcc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNP---NIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~---G~~V~llEk~~~~Gg~~ 130 (356)
.||+|||||++||++|+.|+++. |++|+|+|+...+||.+
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~ 45 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKI 45 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceE
Confidence 58999999999999999999862 79999999999998765
No 298
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.94 E-value=5.8e-05 Score=80.51 Aligned_cols=107 Identities=11% Similarity=0.121 Sum_probs=66.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcC---CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414 91 TDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK 167 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~ 167 (356)
.+|||||+|++|+.+|..|.++ ++++|+||++.+.+. |..-.+ ...+...
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~---Y~r~~L-~~~~~~~----------------------- 56 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA---YDRVHL-SSYFSHH----------------------- 56 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc---ccCCcc-hHhHcCC-----------------------
Confidence 4799999999999999999653 268999999987643 111000 0000000
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
...++.....+.+ ++.|++++.+++|+.+..+... |.+. +..++.+|++|+|||+..
T Consensus 57 ~~~~l~~~~~~~~-~~~gI~~~~g~~V~~Id~~~~~---V~~~--------------~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 57 TAEELSLVREGFY-EKHGIKVLVGERAITINRQEKV---IHSS--------------AGRTVFYDKLIMATGSYP 113 (847)
T ss_pred CHHHccCCCHHHH-HhCCCEEEcCCEEEEEeCCCcE---EEEC--------------CCcEEECCEEEECCCCCc
Confidence 0011111111122 2569999999999988665432 2332 135799999999999764
No 299
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.94 E-value=0.00015 Score=72.16 Aligned_cols=97 Identities=11% Similarity=0.164 Sum_probs=70.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||+|..|+.+|..+++. |.+|+++++.+.+... ...
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~d~ 207 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELILRG--------------------------------------FDD 207 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCCCcc--------------------------------------cCH
Confidence 4799999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++...+.+.+. +.|++++.+++++++..+++.+. +... +..++.+|.||+|+|...
T Consensus 208 ~~~~~l~~~l~-~~gV~i~~~~~v~~i~~~~~~~~-v~~~--------------~g~~i~~D~viva~G~~p 263 (446)
T TIGR01424 208 DMRALLARNME-GRGIRIHPQTSLTSITKTDDGLK-VTLS--------------HGEEIVADVVLFATGRSP 263 (446)
T ss_pred HHHHHHHHHHH-HCCCEEEeCCEEEEEEEcCCeEE-EEEc--------------CCcEeecCEEEEeeCCCc
Confidence 33334445554 67999999999999976554432 3222 135799999999999654
No 300
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.93 E-value=0.00017 Score=71.64 Aligned_cols=97 Identities=13% Similarity=0.170 Sum_probs=70.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|..|+..|..|++. |.+|+|+|+.+.+... ...
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~~~ 199 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANF-GSKVTILEAASLFLPR--------------------------------------EDR 199 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCCCCC--------------------------------------cCH
Confidence 3799999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.+...+.+.+. +.|+++++++.++++..+++.+. +... ..++.+|.||+|+|....
T Consensus 200 ~~~~~l~~~l~-~~gV~v~~~~~v~~i~~~~~~v~-v~~~---------------~g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 200 DIADNIATILR-DQGVDIILNAHVERISHHENQVQ-VHSE---------------HAQLAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEEE-EEEc---------------CCeEEeCEEEEeecCCcC
Confidence 33344555554 67999999999999987665432 2221 135889999999996654
No 301
>PLN02507 glutathione reductase
Probab=97.92 E-value=0.00017 Score=72.75 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=71.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+|+|||+|..|+..|..+++. |.+|+|+++.+.+-.. ...
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~l~~--------------------------------------~d~ 244 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELPLRG--------------------------------------FDD 244 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCcCcc--------------------------------------cCH
Confidence 4799999999999999999999 9999999987532100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++.++.|+++..+++.+. +... +..++.+|.||+|+|....
T Consensus 245 ~~~~~l~~~l~-~~GI~i~~~~~V~~i~~~~~~~~-v~~~--------------~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 245 EMRAVVARNLE-GRGINLHPRTNLTQLTKTEGGIK-VITD--------------HGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEEeCCeEE-EEEC--------------CCcEEEcCEEEEeecCCCC
Confidence 33344445554 67999999999999986655432 2221 1356999999999996654
No 302
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.92 E-value=0.00018 Score=72.00 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||+|..|+.+|..|++. |.+|+++++.+.+... ...
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 218 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRVLPG--------------------------------------EDA 218 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcCCCC--------------------------------------CCH
Confidence 4799999999999999999999 9999999987543210 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
.+...+.+.+. +.|++++++++++++..+++.+. +... +..++.+|.||+|+|....
T Consensus 219 ~~~~~l~~~L~-~~gV~i~~~~~v~~v~~~~~~~~-v~~~--------------~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 219 DAAEVLEEVFA-RRGMTVLKRSRAESVERTGDGVV-VTLT--------------DGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHHHH-HCCcEEEcCCEEEEEEEeCCEEE-EEEC--------------CCcEEEecEEEEeecCCcC
Confidence 22334444444 67999999999999976665543 3332 1356899999999996654
No 303
>PRK14727 putative mercuric reductase; Provisional
Probab=97.92 E-value=0.00018 Score=72.28 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=69.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|..|+..|..|++. |.+|+|+++...... ...
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~l~~---------------------------------------~d~ 228 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARL-GSRVTILARSTLLFR---------------------------------------EDP 228 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCCCCc---------------------------------------chH
Confidence 4799999999999999999999 999999987521100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|++++++++++.+..+++.+. +... ..++.+|.||+|+|....
T Consensus 229 ~~~~~l~~~L~-~~GV~i~~~~~V~~i~~~~~~~~-v~~~---------------~g~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 229 LLGETLTACFE-KEGIEVLNNTQASLVEHDDNGFV-LTTG---------------HGELRAEKLLISTGRHAN 284 (479)
T ss_pred HHHHHHHHHHH-hCCCEEEcCcEEEEEEEeCCEEE-EEEc---------------CCeEEeCEEEEccCCCCC
Confidence 33344555554 67999999999999986655432 2221 245889999999996654
No 304
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.91 E-value=0.00024 Score=75.91 Aligned_cols=99 Identities=17% Similarity=0.159 Sum_probs=70.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||||..|+.+|..|++. |.+|+|+|+.+.+-. . . -..
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~ll~----------~------------~---------------ld~ 187 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPMLMA----------E------------Q---------------LDQ 187 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccchh----------h------------h---------------cCH
Confidence 3699999999999999999999 999999998753110 0 0 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.....+.+.+. +.||++++++.++++..++ +....+...+ +.++.+|.||+|+|-..
T Consensus 188 ~~~~~l~~~L~-~~GV~v~~~~~v~~I~~~~~~~~~~v~~~d--------------G~~i~~D~Vv~A~G~rP 245 (847)
T PRK14989 188 MGGEQLRRKIE-SMGVRVHTSKNTLEIVQEGVEARKTMRFAD--------------GSELEVDFIVFSTGIRP 245 (847)
T ss_pred HHHHHHHHHHH-HCCCEEEcCCeEEEEEecCCCceEEEEECC--------------CCEEEcCEEEECCCccc
Confidence 22334444454 6799999999999997543 3344454432 36799999999999554
No 305
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.91 E-value=0.00013 Score=72.11 Aligned_cols=96 Identities=19% Similarity=0.255 Sum_probs=68.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|.+|+.+|..|++. |.+|+++++...+.... ...
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~~~~~-------------------------------------~~~ 179 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERILNKL-------------------------------------FDE 179 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcccCccc-------------------------------------cCH
Confidence 4899999999999999999999 99999999875421000 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.+...+.+.+. +.|+++++++.++++..+ +.+ +... +..++.+|.||+|+|...
T Consensus 180 ~~~~~~~~~l~-~~gV~v~~~~~v~~i~~~-~~~--v~~~--------------~g~~i~~D~vi~a~G~~p 233 (427)
T TIGR03385 180 EMNQIVEEELK-KHEINLRLNEEVDSIEGE-ERV--KVFT--------------SGGVYQADMVILATGIKP 233 (427)
T ss_pred HHHHHHHHHHH-HcCCEEEeCCEEEEEecC-CCE--EEEc--------------CCCEEEeCEEEECCCccC
Confidence 23334444444 679999999999998654 332 2222 135699999999999553
No 306
>PLN02676 polyamine oxidase
Probab=97.91 E-value=1.3e-05 Score=80.56 Aligned_cols=45 Identities=38% Similarity=0.547 Sum_probs=38.8
Q ss_pred cccCCcccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCcc
Q 018414 85 MITYADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGA 130 (356)
Q Consensus 85 m~~~~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~ 130 (356)
|.....+||+|||||++||+||+.|+++ |. +|+|+|++..+||..
T Consensus 21 ~~~~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~GG~~ 66 (487)
T PLN02676 21 MDAKPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIGGRM 66 (487)
T ss_pred hcccCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCCCcc
Confidence 3344468999999999999999999999 88 699999999888753
No 307
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.91 E-value=4.4e-05 Score=81.09 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=65.5
Q ss_pred EEEECCCHHHHHHHHHhhcC--CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 93 VVVVGAGSAGLSCAYELSKN--PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~--~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
|||||+|+||+.+|.+|.+. ++.+|+|||+.+.++- ..-. ...++... . ...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y---~r~~-L~~~l~g~----------~------------~~~ 54 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNY---NRIL-LSSVLQGE----------A------------DLD 54 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCc---cccc-ccHHHCCC----------C------------CHH
Confidence 68999999999999988763 2679999999876531 1100 11111000 0 001
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++.....+.+ ++.|++++.+++|+.+..++.. |.+. +..++.+|+||+|||...
T Consensus 55 ~l~~~~~~~~-~~~gv~~~~g~~V~~Id~~~k~---V~~~--------------~g~~~~yD~LVlATGs~p 108 (785)
T TIGR02374 55 DITLNSKDWY-EKHGITLYTGETVIQIDTDQKQ---VITD--------------AGRTLSYDKLILATGSYP 108 (785)
T ss_pred HccCCCHHHH-HHCCCEEEcCCeEEEEECCCCE---EEEC--------------CCcEeeCCEEEECCCCCc
Confidence 1110111122 2569999999999999766543 2332 135799999999999764
No 308
>PRK14694 putative mercuric reductase; Provisional
Probab=97.91 E-value=0.00018 Score=72.00 Aligned_cols=96 Identities=15% Similarity=0.251 Sum_probs=69.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||+|..|+..|..|++. |.+|+++++...... ...
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~~l~~---------------------------------------~~~ 218 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARL-GSRVTVLARSRVLSQ---------------------------------------EDP 218 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEECCCCCCC---------------------------------------CCH
Confidence 4799999999999999999999 999999986421110 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|+++++++.++++..+++.+. +... ..++.+|.||+|+|....
T Consensus 219 ~~~~~l~~~l~-~~GI~v~~~~~v~~i~~~~~~~~-v~~~---------------~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 219 AVGEAIEAAFR-REGIEVLKQTQASEVDYNGREFI-LETN---------------AGTLRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHHH-hCCCEEEeCCEEEEEEEcCCEEE-EEEC---------------CCEEEeCEEEEccCCCCC
Confidence 33344455554 67999999999999876655332 3221 235999999999996654
No 309
>PRK10262 thioredoxin reductase; Provisional
Probab=97.89 E-value=0.00014 Score=69.05 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=72.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|..|+.+|..|++. +.+|+++++...+.. ..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~~~~----------------------------------------~~ 185 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGFRA----------------------------------------EK 185 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCccCC----------------------------------------CH
Confidence 4799999999999999999999 999999998753210 01
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.+...+.+.+. +.|++++.++.++++..+++++.++...+. .. .++..++.+|.||+|+|...
T Consensus 186 ~~~~~~~~~l~-~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~------~~--~~~~~~i~~D~vv~a~G~~p 248 (321)
T PRK10262 186 ILIKRLMDKVE-NGNIILHTNRTLEEVTGDQMGVTGVRLRDT------QN--SDNIESLDVAGLFVAIGHSP 248 (321)
T ss_pred HHHHHHHhhcc-CCCeEEEeCCEEEEEEcCCccEEEEEEEEc------CC--CCeEEEEECCEEEEEeCCcc
Confidence 12233444443 779999999999999765556666655321 00 01235799999999999554
No 310
>PLN02568 polyamine oxidase
Probab=97.89 E-value=1.6e-05 Score=80.81 Aligned_cols=40 Identities=30% Similarity=0.579 Sum_probs=36.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCC-----CeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPN-----IQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G-----~~V~llEk~~~~Gg~~ 130 (356)
..||+|||||++||++|+.|++. | ++|+|+|++..+||..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~GGr~ 49 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIGGRI 49 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcCCeE
Confidence 47999999999999999999987 6 8999999999888754
No 311
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.88 E-value=0.00024 Score=71.24 Aligned_cols=101 Identities=10% Similarity=0.096 Sum_probs=71.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+++|||+|..|+.+|..|++. |.+|+|||+.+.+... ...
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~il~~--------------------------------------~d~ 215 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQVIPA--------------------------------------ADK 215 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCCCCc--------------------------------------CCH
Confidence 4799999999999999999999 9999999988642110 013
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++.+.+.+.+. +. ++++.++.++.+..+++.+. +...+ . .++..++.+|.||+|+|....
T Consensus 216 ~~~~~~~~~l~-~~-v~i~~~~~v~~i~~~~~~~~-v~~~~------~----~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 216 DIVKVFTKRIK-KQ-FNIMLETKVTAVEAKEDGIY-VTMEG------K----KAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred HHHHHHHHHHh-hc-eEEEcCCEEEEEEEcCCEEE-EEEEe------C----CCcceEEEeCEEEEeeccccc
Confidence 33444555554 44 99999999999986655443 32221 0 012357999999999996553
No 312
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.88 E-value=0.00015 Score=70.52 Aligned_cols=162 Identities=20% Similarity=0.226 Sum_probs=96.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCC------------CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNP------------NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD 158 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~------------G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~ 158 (356)
-+++|||||+.|...|-+|+..- ..+|+|+|+++.+--
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp------------------------------ 205 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP------------------------------ 205 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc------------------------------
Confidence 47999999999999999887520 248999998864321
Q ss_pred ccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCe-EEEcCEEEEc
Q 018414 159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPN-VMEAKVVVSS 237 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~-~i~Ak~VI~A 237 (356)
.....+.....+. .++.||+++.++.|+++..+ +|.+.+ +. +|.++.+|.|
T Consensus 206 --------~~~~~l~~~a~~~-L~~~GV~v~l~~~Vt~v~~~-----~v~~~~--------------g~~~I~~~tvvWa 257 (405)
T COG1252 206 --------MFPPKLSKYAERA-LEKLGVEVLLGTPVTEVTPD-----GVTLKD--------------GEEEIPADTVVWA 257 (405)
T ss_pred --------CCCHHHHHHHHHH-HHHCCCEEEcCCceEEECCC-----cEEEcc--------------CCeeEecCEEEEc
Confidence 0113333333333 34789999999999998532 234431 12 6999999999
Q ss_pred CCCCCCCCCccchhhhccCcccccccccccccccccceeeeccc--cccCceeEeceEEEEecCCcccCCccce-eeeeh
Q 018414 238 CGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTR--EVVPGMIVTGMEVAEIDGAPRMGPTFGA-MMISG 314 (356)
Q Consensus 238 tGg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--e~~~g~~~~~~~~~~~~g~~~~~~~~g~-~l~sG 314 (356)
+|-.++.- .+.+ .+. ..+.....++.-.- .-.+.+|+.|....+.+. +..|.... ..-.|
T Consensus 258 aGv~a~~~---~~~l--~~~----------e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~--~p~P~tAQ~A~Qqg 320 (405)
T COG1252 258 AGVRASPL---LKDL--SGL----------ETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP--RPVPPTAQAAHQQG 320 (405)
T ss_pred CCCcCChh---hhhc--Chh----------hhccCCCEEeCCCcccCCCCCeEEEeccccCCCC--CCCCChhHHHHHHH
Confidence 99766422 1111 011 01111111110000 012678888877766654 33333322 22578
Q ss_pred HHHHHHHHHHhCC
Q 018414 315 QKAAHLALKSLGQ 327 (356)
Q Consensus 315 ~~~~~l~l~~~~~ 327 (356)
..+++.+.+++..
T Consensus 321 ~~~a~ni~~~l~g 333 (405)
T COG1252 321 EYAAKNIKARLKG 333 (405)
T ss_pred HHHHHHHHHHhcC
Confidence 8889999999866
No 313
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.88 E-value=1.5e-05 Score=79.42 Aligned_cols=38 Identities=37% Similarity=0.522 Sum_probs=35.2
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
+|+|||||++||++|+.|+++ |++|+|+|+.+.+||.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCCCCc
Confidence 489999999999999999999 99999999999888754
No 314
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.87 E-value=0.00014 Score=73.73 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=72.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+|+|||||..|+.+|..|+.. +.+|+|+++.+.+.. .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l~~-----------------------------------------~ 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPELKA-----------------------------------------D 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccccc-----------------------------------------c
Confidence 4899999999999999999998 999999998753210 0
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..+.+.+.+..|+++++++.++++..+++++.++...+ .. +++..++.+|.|++|.|...
T Consensus 390 ---~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~v~~v~~~~------~~---~g~~~~i~~D~v~~~~G~~p 449 (517)
T PRK15317 390 ---QVLQDKLRSLPNVTIITNAQTTEVTGDGDKVTGLTYKD------RT---TGEEHHLELEGVFVQIGLVP 449 (517)
T ss_pred ---HHHHHHHhcCCCcEEEECcEEEEEEcCCCcEEEEEEEE------CC---CCcEEEEEcCEEEEeECCcc
Confidence 11233344346999999999999987767777776542 11 12346799999999999654
No 315
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.87 E-value=1.3e-05 Score=79.97 Aligned_cols=39 Identities=33% Similarity=0.562 Sum_probs=34.8
Q ss_pred cEEEECCCHHHHHHHHHhhcC-----CCCeEEEEeccCCCCCcc
Q 018414 92 DVVVVGAGSAGLSCAYELSKN-----PNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~-----~G~~V~llEk~~~~Gg~~ 130 (356)
+|+|||||++||+||+.|++. .+.+|+|+|+.+.+||.+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~ 46 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKI 46 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceE
Confidence 699999999999999999985 147999999999998765
No 316
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.86 E-value=0.00023 Score=71.53 Aligned_cols=99 Identities=11% Similarity=0.138 Sum_probs=69.9
Q ss_pred ccEEEECCCHHHHHHHHHh---hcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414 91 TDVVVVGAGSAGLSCAYEL---SKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK 167 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~L---a~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~ 167 (356)
-.|+|||||..|+.+|..+ .+. |.+|+|+|+.+.+...
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~-G~~Vtli~~~~~il~~-------------------------------------- 228 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPR-GGKVTLCYRNNMILRG-------------------------------------- 228 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccC-CCeEEEEecCCccccc--------------------------------------
Confidence 4799999999999999654 345 8999999987643110
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
...++.+.+.+.+. +.|+++++++.++++..+++....+...+ ..++.+|.||+|+|....
T Consensus 229 ~d~~~~~~l~~~L~-~~GI~i~~~~~v~~i~~~~~~~~~v~~~~--------------g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 229 FDSTLRKELTKQLR-ANGINIMTNENPAKVTLNADGSKHVTFES--------------GKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred cCHHHHHHHHHHHH-HcCCEEEcCCEEEEEEEcCCceEEEEEcC--------------CCEEEcCEEEEeeCCCcC
Confidence 01344455566665 67999999999999976544333343321 257999999999996543
No 317
>PRK13748 putative mercuric reductase; Provisional
Probab=97.85 E-value=0.00022 Score=73.00 Aligned_cols=96 Identities=11% Similarity=0.186 Sum_probs=69.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||+|..|+.+|..|++. |.+|+|+++...... ...
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~~---------------------------------------~d~ 310 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARL-GSKVTILARSTLFFR---------------------------------------EDP 310 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEecCccccc---------------------------------------cCH
Confidence 4799999999999999999999 999999997531100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.|+++++++.++++..+++.+. +... ..++.+|.||+|+|....
T Consensus 311 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~~~~~~~~-v~~~---------------~~~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 311 AIGEAVTAAFR-AEGIEVLEHTQASQVAHVDGEFV-LTTG---------------HGELRADKLLVATGRAPN 366 (561)
T ss_pred HHHHHHHHHHH-HCCCEEEcCCEEEEEEecCCEEE-EEec---------------CCeEEeCEEEEccCCCcC
Confidence 33344455554 67999999999999987665432 2221 135899999999996543
No 318
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=1.8e-05 Score=77.95 Aligned_cols=38 Identities=37% Similarity=0.615 Sum_probs=36.2
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
.|+|+|||.|||+||++|+++ |++|+|+|+++.+||.+
T Consensus 2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccCcee
Confidence 599999999999999999999 99999999999999875
No 319
>PRK07846 mycothione reductase; Reviewed
Probab=97.82 E-value=0.00023 Score=70.90 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=68.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+++|||+|..|+.+|..|++. |.+|+|+|+.+.+... ...
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~ll~~--------------------------------------~d~ 207 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRLLRH--------------------------------------LDD 207 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCccccc--------------------------------------cCH
Confidence 4899999999999999999999 9999999987542100 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++.+.+. ++. +.+++++++++++++..+++.+. +... +..++.+|.||+|+|....
T Consensus 208 ~~~~~l~-~l~-~~~v~i~~~~~v~~i~~~~~~v~-v~~~--------------~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 208 DISERFT-ELA-SKRWDVRLGRNVVGVSQDGSGVT-LRLD--------------DGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HHHHHHH-HHH-hcCeEEEeCCEEEEEEEcCCEEE-EEEC--------------CCcEeecCEEEEEECCccC
Confidence 2223332 333 35799999999999976655432 3322 1357999999999996543
No 320
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.82 E-value=0.00017 Score=76.62 Aligned_cols=98 Identities=13% Similarity=0.202 Sum_probs=70.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||||..|+.+|..|++. |.+|+|+|+.+.+-.. . . ..
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~ll~~-------------------~----------------l--d~ 182 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPGLMAK-------------------Q----------------L--DQ 182 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCchhhh-------------------h----------------c--CH
Confidence 4799999999999999999999 9999999987532100 0 0 01
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.....+.+.+. +.||++++++.++++..+ +++.++...+ +.++.+|.||+|+|...
T Consensus 183 ~~~~~l~~~l~-~~GV~v~~~~~v~~i~~~-~~~~~v~~~d--------------G~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 183 TAGRLLQRELE-QKGLTFLLEKDTVEIVGA-TKADRIRFKD--------------GSSLEADLIVMAAGIRP 238 (785)
T ss_pred HHHHHHHHHHH-HcCCEEEeCCceEEEEcC-CceEEEEECC--------------CCEEEcCEEEECCCCCc
Confidence 22233344443 679999999999888643 4455565542 35799999999999654
No 321
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.80 E-value=0.00033 Score=71.04 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+...+...+.+.+. +.|++++++++|+++..+++++.+|.+.+ .. +++..+++|+.||+|+|.++
T Consensus 126 dp~~l~~al~~~A~-~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~------~~---~g~~~~i~a~~VVnAaG~wa 190 (516)
T TIGR03377 126 DPFRLVAANVLDAQ-EHGARIFTYTKVTGLIREGGRVTGVKVED------HK---TGEEERIEAQVVINAAGIWA 190 (516)
T ss_pred CHHHHHHHHHHHHH-HcCCEEEcCcEEEEEEEECCEEEEEEEEE------cC---CCcEEEEEcCEEEECCCcch
Confidence 45667777777776 67999999999999999888888887642 00 12346799999999999776
No 322
>PTZ00058 glutathione reductase; Provisional
Probab=97.80 E-value=0.0003 Score=71.85 Aligned_cols=98 Identities=8% Similarity=0.104 Sum_probs=70.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||+|..|+..|..+++. |.+|+|+|+.+.+.. ....
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~il~--------------------------------------~~d~ 278 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGNRLLR--------------------------------------KFDE 278 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEecccccc--------------------------------------cCCH
Confidence 4799999999999999999999 999999998753210 0013
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++.+.+.+.+. +.|++++.++.+.++..+++ .+. +...+ +..++.+|.||+|+|...
T Consensus 279 ~i~~~l~~~L~-~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~-------------~~~~i~aD~VlvA~Gr~P 336 (561)
T PTZ00058 279 TIINELENDMK-KNNINIITHANVEEIEKVKEKNLT-IYLSD-------------GRKYEHFDYVIYCVGRSP 336 (561)
T ss_pred HHHHHHHHHHH-HCCCEEEeCCEEEEEEecCCCcEE-EEECC-------------CCEEEECCEEEECcCCCC
Confidence 33444555554 67999999999999976533 332 22111 135799999999999554
No 323
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.79 E-value=2.4e-05 Score=77.52 Aligned_cols=73 Identities=29% Similarity=0.370 Sum_probs=53.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
..|.|||+||+||.+|..|++. |+.|+++|+...+||-... |++- +.-..
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~GGll~y---------------------GIP~--------~kl~k 173 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDGGLLLY---------------------GIPD--------FKLPK 173 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCceeEEe---------------------cCch--------hhccc
Confidence 5899999999999999999999 9999999999888763321 2111 11124
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEE
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAA 194 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v 194 (356)
++.+..++.+. +.|++|+.++++
T Consensus 174 ~i~d~~i~~l~-~~Gv~~~~~~~v 196 (457)
T COG0493 174 DILDRRLELLE-RSGVEFKLNVRV 196 (457)
T ss_pred hHHHHHHHHHH-HcCeEEEEcceE
Confidence 45555566665 567999998755
No 324
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.77 E-value=0.0001 Score=71.57 Aligned_cols=207 Identities=18% Similarity=0.294 Sum_probs=111.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~-G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
..|||||||.+|+.+|..|.+++ +.+|++||++...- +..++.+ +.. | ..+.
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl---------~~plL~e------va~-g-----------~l~~ 56 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL---------FTPLLYE------VAT-G-----------TLSE 56 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc---------cchhhhh------hhc-C-----------CCCh
Confidence 57999999999999999999972 48999999987421 1111100 000 0 0011
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCC-CCcc
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPF-GATG 248 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~-~~~~ 248 (356)
......+.+-+....+++++.+ +|++|..++.+|. +. +...+..|++|+|.|+.... +.+|
T Consensus 57 ~~i~~p~~~~~~~~~~v~~~~~-~V~~ID~~~k~V~---~~--------------~~~~i~YD~LVvalGs~~~~fgi~G 118 (405)
T COG1252 57 SEIAIPLRALLRKSGNVQFVQG-EVTDIDRDAKKVT---LA--------------DLGEISYDYLVVALGSETNYFGIPG 118 (405)
T ss_pred hheeccHHHHhcccCceEEEEE-EEEEEcccCCEEE---eC--------------CCccccccEEEEecCCcCCcCCCCC
Confidence 2222222333332445999888 8999998887653 32 13669999999999976522 2233
Q ss_pred chhhhc-cCc-ccccccc-------ccccccccc-c---eee--------ecccc-------ccC--ceeEeceEEEEec
Q 018414 249 VKRLKS-IGM-IEEVPGM-------KALDMNSAE-D---AIV--------RLTRE-------VVP--GMIVTGMEVAEID 298 (356)
Q Consensus 249 ~~~~~~-~g~-~~~~~~~-------~~~~~~~~~-~---~~~--------~~~~e-------~~~--g~~~~~~~~~~~~ 298 (356)
.....- +.- .+..... ......... . .++ ++..| ... ........+.+++
T Consensus 119 ~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVe 198 (405)
T COG1252 119 AAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVE 198 (405)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEc
Confidence 222110 000 0000000 000000000 0 011 00000 000 0111134778888
Q ss_pred CCcccCCccceeeeehHHHHHHHHHHhCCCCCCCCcccccCCchhhhh
Q 018414 299 GAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILA 346 (356)
Q Consensus 299 g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 346 (356)
..+++.|.|.+-+ ...++..|++++.....+..| ..+.|+-|..
T Consensus 199 a~p~ILp~~~~~l---~~~a~~~L~~~GV~v~l~~~V-t~v~~~~v~~ 242 (405)
T COG1252 199 AGPRILPMFPPKL---SKYAERALEKLGVEVLLGTPV-TEVTPDGVTL 242 (405)
T ss_pred cCchhccCCCHHH---HHHHHHHHHHCCCEEEcCCce-EEECCCcEEE
Confidence 8889888887776 667888888888887766664 2455554443
No 325
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.75 E-value=0.00035 Score=65.04 Aligned_cols=97 Identities=16% Similarity=0.310 Sum_probs=68.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
..|+|||+|..|+-+|..|++. +.+|+++++.+... .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~~~~----------------------------------------~-- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRDKFR----------------------------------------A-- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCcccC----------------------------------------c--
Confidence 4899999999999999999998 99999999864210 0
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
...+.+.+.+..|++++++++++++..++ ++..+...+ .. .++..++.+|.||+|+|...
T Consensus 179 --~~~~~~~l~~~~gv~~~~~~~v~~i~~~~-~~~~v~~~~------~~---~g~~~~i~~D~vi~a~G~~~ 238 (300)
T TIGR01292 179 --EKILLDRLRKNPNIEFLWNSTVKEIVGDN-KVEGVKIKN------TV---TGEEEELKVDGVFIAIGHEP 238 (300)
T ss_pred --CHHHHHHHHhCCCeEEEeccEEEEEEccC-cEEEEEEEe------cC---CCceEEEEccEEEEeeCCCC
Confidence 01223344433499999999999997544 555554421 01 12347899999999999543
No 326
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.74 E-value=0.00028 Score=70.06 Aligned_cols=93 Identities=17% Similarity=0.195 Sum_probs=67.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||||..|+.+|..|++. |.+|+|+++.+.+... ...
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l~~~--------------------------------------~d~ 189 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYER-GLHPTLIHRSDKINKL--------------------------------------MDA 189 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEecccccchh--------------------------------------cCH
Confidence 4799999999999999999999 9999999987542110 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++...+.+.+. +.|++++++++++++. +. .+...+ ...+.+|.||+|+|...
T Consensus 190 ~~~~~l~~~l~-~~gI~i~~~~~v~~i~--~~---~v~~~~--------------g~~~~~D~vl~a~G~~p 241 (438)
T PRK13512 190 DMNQPILDELD-KREIPYRLNEEIDAIN--GN---EVTFKS--------------GKVEHYDMIIEGVGTHP 241 (438)
T ss_pred HHHHHHHHHHH-hcCCEEEECCeEEEEe--CC---EEEECC--------------CCEEEeCEEEECcCCCc
Confidence 33344455554 6799999999999884 22 233321 24689999999999554
No 327
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.73 E-value=0.00053 Score=68.27 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=70.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||||..|+-+|..|.+. |.+|+++++..... + . ..
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~~~---~--------------------------------~--~~-- 312 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTRED---M--------------------------------T--AR-- 312 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCccc---C--------------------------------C--CC--
Confidence 4799999999999999999999 99999999874210 0 0 00
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCC------CCCCeEEEcCEEEEcCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQS------CMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~------~g~~~~i~Ak~VI~AtGg~ 241 (356)
...++.+. +.||++++++.++++..+ ++++.++.+..........++. .++..++.+|.||+|.|-.
T Consensus 313 ---~~~~~~l~-~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~ 386 (449)
T TIGR01316 313 ---VEEIAHAE-EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNG 386 (449)
T ss_pred ---HHHHHHHH-hCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCC
Confidence 11123343 579999999999998764 5677777653100000000000 1234579999999999943
No 328
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.72 E-value=0.00047 Score=69.60 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=68.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+++|||+|..|+..|..|++. |.+|+|+++..... . ...
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l~--~-------------------------------------~d~ 222 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNEL-GFDVTVAVRSIPLR--G-------------------------------------FDR 222 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCcccc--c-------------------------------------CCH
Confidence 3799999999999999999999 99999998642110 0 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++.+.+.+.+. +.|++++.++.+.++...++.+. +...+ ..++.+|.||+|+|....
T Consensus 223 ~~~~~l~~~l~-~~GV~i~~~~~v~~v~~~~~~~~-v~~~~--------------g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 223 QCSEKVVEYMK-EQGTLFLEGVVPINIEKMDDKIK-VLFSD--------------GTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHH-HcCCEEEcCCeEEEEEEcCCeEE-EEECC--------------CCEEEcCEEEEeeCCCCC
Confidence 23344555554 67999999999988876554332 33321 246889999999996543
No 329
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.72 E-value=0.00043 Score=69.59 Aligned_cols=99 Identities=17% Similarity=0.147 Sum_probs=69.0
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechHH
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~ 171 (356)
.++|||||..|+.+|..|++. |.+|+|+++.. +-. ....+
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~-~l~--------------------------------------~~d~~ 221 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRSI-LLR--------------------------------------GFDQD 221 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCcEEEEEecc-ccc--------------------------------------ccCHH
Confidence 699999999999999999999 99999998742 110 00133
Q ss_pred HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+.+.+.+.+. +.|+++++++.++++...++.+. +...+ . .+..++.+|.||+|+|....
T Consensus 222 ~~~~l~~~L~-~~gV~i~~~~~v~~v~~~~~~~~-v~~~~-------~----~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 222 CANKVGEHME-EHGVKFKRQFVPIKVEQIEAKVK-VTFTD-------S----TNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHH-HcCCEEEeCceEEEEEEcCCeEE-EEEec-------C----CcceEEEeCEEEEEecCCcC
Confidence 3444555554 67999999999988876555432 33221 0 01247999999999996543
No 330
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.70 E-value=0.00059 Score=68.05 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=69.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||+|..|+..|..|++. |.+|+++|+.+.+... ...
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 210 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRILPL--------------------------------------EDP 210 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCcCcc--------------------------------------hhH
Confidence 4799999999999999999999 9999999987643210 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCC-eEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGG-RVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~-~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +. ++++++++++++..+++ .+. +...+ ++..++.+|.||+|+|....
T Consensus 211 ~~~~~~~~~l~-~~-I~i~~~~~v~~i~~~~~~~v~-~~~~~------------~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 211 EVSKQAQKILS-KE-FKIKLGAKVTSVEKSGDEKVE-ELEKG------------GKTETIEADYVLVATGRRPN 269 (460)
T ss_pred HHHHHHHHHHh-hc-cEEEcCCEEEEEEEcCCceEE-EEEcC------------CceEEEEeCEEEEccCCccC
Confidence 33444455554 55 99999999999976544 222 11111 12467999999999996543
No 331
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.70 E-value=0.00049 Score=68.59 Aligned_cols=97 Identities=14% Similarity=0.168 Sum_probs=68.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||+|..|+..|..|++. |.+|+++|+.+.+... ...
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~ll~~--------------------------------------~d~ 210 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKLLRH--------------------------------------LDE 210 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCccccc--------------------------------------cCH
Confidence 4799999999999999999999 9999999987532100 002
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+ +. +.++++++++.++++..+++.+. +... +..++.+|.||+|+|....
T Consensus 211 ~~~~~l~~-~~-~~gI~i~~~~~V~~i~~~~~~v~-v~~~--------------~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 211 DISDRFTE-IA-KKKWDIRLGRNVTAVEQDGDGVT-LTLD--------------DGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHHH-HH-hcCCEEEeCCEEEEEEEcCCeEE-EEEc--------------CCCEEEcCEEEEeeccCcC
Confidence 22223332 33 34799999999999987665432 3322 1247999999999996543
No 332
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.69 E-value=8.5e-05 Score=70.28 Aligned_cols=39 Identities=38% Similarity=0.592 Sum_probs=34.2
Q ss_pred cccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg 128 (356)
...|+|||+||||+.+|..|-+ .++.+|.|+||.+.+.|
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 3589999999999999999888 45899999999987765
No 333
>PLN02529 lysine-specific histone demethylase 1
Probab=97.67 E-value=5e-05 Score=79.34 Aligned_cols=40 Identities=35% Similarity=0.636 Sum_probs=36.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
..||+|||||++|++||+.|+++ |++|+|+|+...+||..
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPGGRV 199 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCcCce
Confidence 57999999999999999999999 99999999988877654
No 334
>PLN02546 glutathione reductase
Probab=97.66 E-value=0.00071 Score=69.09 Aligned_cols=99 Identities=12% Similarity=0.128 Sum_probs=68.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+|+|||||..|+..|..|++. |.+|+|+|+.+.+... ...
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~il~~--------------------------------------~d~ 293 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKVLRG--------------------------------------FDE 293 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEeccccccc--------------------------------------cCH
Confidence 4799999999999999999998 9999999987542110 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
++...+.+.+. +.||+++.++.++++..+++....+... +.....+|.||+|+|....
T Consensus 294 ~~~~~l~~~L~-~~GV~i~~~~~v~~i~~~~~g~v~v~~~--------------~g~~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 294 EVRDFVAEQMS-LRGIEFHTEESPQAIIKSADGSLSLKTN--------------KGTVEGFSHVMFATGRKPN 351 (558)
T ss_pred HHHHHHHHHHH-HCCcEEEeCCEEEEEEEcCCCEEEEEEC--------------CeEEEecCEEEEeeccccC
Confidence 33344455554 6799999999999997643332223321 1233448999999996543
No 335
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.65 E-value=0.0006 Score=67.15 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
+|||||+|.|..-+..|..|++. |++|+-+|+++.-||.
T Consensus 4 ~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYGg~ 42 (438)
T PF00996_consen 4 EYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYGGE 42 (438)
T ss_dssp BESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSCGG
T ss_pred cceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcCCc
Confidence 69999999999999999999999 9999999999988754
No 336
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00029 Score=65.62 Aligned_cols=105 Identities=19% Similarity=0.271 Sum_probs=63.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhcc----------c--hHHHHHHHhCCCcc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVR----------K--PAHIFLDELGIDYD 158 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~----------~--~~~~~l~~~G~~~~ 158 (356)
..|.|||||.||..+||+++++ |++|.|.|-.+.-+.-....+. +..+++. . -....+..+|--.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~k~TpaH~td~-fAELVCSNSlr~~~~~navGlLk~EMR~lgSlii 81 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPVKGTPAHKTDN-FAELVCSNSLRSDALTNAVGLLKAEMRLLGSLII 81 (439)
T ss_pred CceEEEcccccccHHHHHHHHc-CCcEEEEEcccccCCCcccccc-hhhheeccccccchhhhhhHHHHHHHHHhhhHHh
Confidence 4689999999999999999999 9999999977533211111111 1111111 0 01233333332111
Q ss_pred c-------cCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEE
Q 018414 159 E-------QDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLI 198 (356)
Q Consensus 159 ~-------~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~ 198 (356)
. ..+..+..+...|.+.+.+.+.+.+.|+++.+ +|++|-
T Consensus 82 ~~Ad~~~VPAGgALAVDR~~Fs~~vT~~l~~hpli~vire-Evt~iP 127 (439)
T COG1206 82 EAADKHRVPAGGALAVDRDGFSQAVTEKLENHPLIEVIRE-EVTEIP 127 (439)
T ss_pred hhhhhccCCCCceeeecHhHHHHHHHHHHhcCCCEEEEcc-ccccCC
Confidence 1 01223344567788888888888889998877 666663
No 337
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.63 E-value=0.00068 Score=70.42 Aligned_cols=108 Identities=14% Similarity=-0.006 Sum_probs=70.3
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||||..|+..|..|++. |.+|+|+|+.+.+... ...
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~ll~~--------------------------------------~d~ 353 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQLLPL--------------------------------------LDA 353 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCccccc--------------------------------------CCH
Confidence 4799999999999999999999 9999999998643210 012
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCe-EEEEEEcceeeecccCCCC-CC------CCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGR-VGGVVTNWALVSMNHDTQS-CM------DPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~-v~gv~~~~~~~~~~~~~~~-~g------~~~~i~Ak~VI~AtGg~~ 242 (356)
++...+.+.+.++.||+++.++.|+++..+++. ...+...+ ..++. .+ +..++.+|.||+|+|...
T Consensus 354 eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~------~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~P 427 (659)
T PTZ00153 354 DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSE------RQTGESDGPKKNMNDIKETYVDSCLVATGRKP 427 (659)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEec------cccccccccccccccceEEEcCEEEEEECccc
Confidence 233334444434679999999999999765432 11122110 00000 00 124799999999999654
Q ss_pred C
Q 018414 243 P 243 (356)
Q Consensus 243 ~ 243 (356)
.
T Consensus 428 n 428 (659)
T PTZ00153 428 N 428 (659)
T ss_pred C
Confidence 3
No 338
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.62 E-value=0.00058 Score=66.35 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+...+...|.+.+. + |+++++++.|+++..+++++ .+.+.. ...++|+.||+|+|.++.
T Consensus 133 dp~~~~~~l~~~~~-~-G~~i~~~~~V~~i~~~~~~~-~v~t~~--------------g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 133 SPPQLCRALLAHAG-I-RLTLHFNTEITSLERDGEGW-QLLDAN--------------GEVIAASVVVLANGAQAG 191 (381)
T ss_pred ChHHHHHHHHhccC-C-CcEEEeCCEEEEEEEcCCeE-EEEeCC--------------CCEEEcCEEEEcCCcccc
Confidence 44667777777765 5 99999999999998876653 354431 245899999999998764
No 339
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.62 E-value=6.2e-05 Score=75.47 Aligned_cols=37 Identities=43% Similarity=0.560 Sum_probs=34.4
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
+|+|||||++|+++|+.|++. |++|+|+|+...+||.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~ 37 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIGGK 37 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCCce
Confidence 489999999999999999999 9999999999888864
No 340
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.61 E-value=0.0013 Score=64.94 Aligned_cols=40 Identities=35% Similarity=0.557 Sum_probs=34.9
Q ss_pred ccEEEECCCHHHHHHHHHhhcC---CCCeEEEEeccCCCCCcc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~llEk~~~~Gg~~ 130 (356)
.++=|||+|+|+|++|..|-+. ||.+|.|+|+...+||+.
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 4678999999999999999873 588999999998888654
No 341
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.61 E-value=7.1e-05 Score=78.71 Aligned_cols=40 Identities=40% Similarity=0.650 Sum_probs=36.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
..+|+|||||++|+++|+.|++. |++|+|+|+...+||..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCCCcc
Confidence 57899999999999999999999 99999999998887653
No 342
>PLN02487 zeta-carotene desaturase
Probab=97.58 E-value=9e-05 Score=75.62 Aligned_cols=37 Identities=38% Similarity=0.537 Sum_probs=35.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
.+|+|||+|++|+++|+.|++. |++|+|+|+...+||
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~gG 112 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIGG 112 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCCC
Confidence 5899999999999999999999 999999999988875
No 343
>PRK12831 putative oxidoreductase; Provisional
Probab=97.56 E-value=0.0012 Score=65.93 Aligned_cols=107 Identities=15% Similarity=0.135 Sum_probs=70.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||||..|+-+|..|.+. |.+|+++++..... +. ....
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~~~~---m~----------------------------------a~~~ 323 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRL-GAEVHIVYRRSEEE---LP----------------------------------ARVE 323 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCEEEEEeecCccc---CC----------------------------------CCHH
Confidence 4899999999999999999999 99999998764210 00 0001
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceee-ecccCCCC------CCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDTQS------CMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~-~~~~~~~~------~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+ ++.+. +.|+++++++.++++..+ ++++.++.+..... ..+. ++. .++..++.+|.||+|.|-..
T Consensus 324 e-----~~~a~-~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~-~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p 396 (464)
T PRK12831 324 E-----VHHAK-EEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDA-SGRRRPVEIEGSEFVLEVDTVIMSLGTSP 396 (464)
T ss_pred H-----HHHHH-HcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCC-CCCccceecCCceEEEECCEEEECCCCCC
Confidence 1 12233 569999999999999764 56787776531100 0000 010 12345799999999999543
No 344
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.52 E-value=0.00097 Score=65.91 Aligned_cols=161 Identities=20% Similarity=0.223 Sum_probs=92.8
Q ss_pred cEEEECCCHHHHHHHHHhhcC-------------CCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcc
Q 018414 92 DVVVVGAGSAGLSCAYELSKN-------------PNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYD 158 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~-------------~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~ 158 (356)
.++|||||+.|+..|..|++. ++.+|+|+|+.+.+-..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~----------------------------- 225 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGS----------------------------- 225 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccccc-----------------------------
Confidence 799999999999999988751 27899999987542110
Q ss_pred ccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcC
Q 018414 159 EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSC 238 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~At 238 (356)
....+.+.+.+.+. +.||+++.+++++++.. +. +.+.+ +.++.+|.||.|+
T Consensus 226 ---------~~~~~~~~~~~~L~-~~gV~v~~~~~v~~v~~--~~---v~~~~--------------g~~i~~d~vi~~~ 276 (424)
T PTZ00318 226 ---------FDQALRKYGQRRLR-RLGVDIRTKTAVKEVLD--KE---VVLKD--------------GEVIPTGLVVWST 276 (424)
T ss_pred ---------CCHHHHHHHHHHHH-HCCCEEEeCCeEEEEeC--CE---EEECC--------------CCEEEccEEEEcc
Confidence 01223344455554 67999999999988852 32 33331 3579999999999
Q ss_pred CCCCCCCCccchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccce-eeeehHHH
Q 018414 239 GHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA-MMISGQKA 317 (356)
Q Consensus 239 Gg~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~-~l~sG~~~ 317 (356)
|..... .+...++. ......+.++ +.. .. .=.+++|..|....... ...+..+. ....|+.+
T Consensus 277 G~~~~~------~~~~~~l~--~~~~G~I~Vd--~~l--~~--~~~~~IfAiGD~a~~~~---~~~~~~~~~A~~qg~~~ 339 (424)
T PTZ00318 277 GVGPGP------LTKQLKVD--KTSRGRISVD--DHL--RV--KPIPNVFALGDCAANEE---RPLPTLAQVASQQGVYL 339 (424)
T ss_pred CCCCcc------hhhhcCCc--ccCCCcEEeC--CCc--cc--CCCCCEEEEeccccCCC---CCCCCchHHHHHHHHHH
Confidence 954321 12222220 0000011111 110 00 01377888776554321 11222222 23678889
Q ss_pred HHHHHHHhCC
Q 018414 318 AHLALKSLGQ 327 (356)
Q Consensus 318 ~~l~l~~~~~ 327 (356)
++.+.+.+..
T Consensus 340 A~ni~~~l~g 349 (424)
T PTZ00318 340 AKEFNNELKG 349 (424)
T ss_pred HHHHHHHhcC
Confidence 9999888853
No 345
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.46 E-value=0.0015 Score=63.70 Aligned_cols=101 Identities=19% Similarity=0.184 Sum_probs=75.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
.--|++||+|..|+.+|..|... +++|+++++.+.+- ..+ -.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~-~~~VT~V~~e~~~~----------~~l---------------------------f~ 254 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSK-AKSVTVVFPEPWLL----------PRL---------------------------FG 254 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhc-CceEEEEccCccch----------hhh---------------------------hh
Confidence 45799999999999999999999 99999999875210 000 01
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
..+.+.+.+.+ ++.|++++.++.+..+... +|++.-|.+.+ ..++.||.||+.+|....
T Consensus 255 ~~i~~~~~~y~-e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~d--------------g~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 255 PSIGQFYEDYY-ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKD--------------GKTLEADLVVVGIGIKPN 314 (478)
T ss_pred HHHHHHHHHHH-HhcCeEEEEecceeecccCCCCcEEEEEecc--------------CCEeccCeEEEeeccccc
Confidence 22233333333 4789999999999999875 47888787753 578999999999996653
No 346
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.44 E-value=0.002 Score=64.34 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=69.3
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-.|+|||+|..|+-+|..|.+. |. +|+++++..... +. ..
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~~~~---~~----------------------------------~~- 314 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRGREE---MP----------------------------------AS- 314 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCccc---CC----------------------------------CC-
Confidence 5799999999999999999998 77 899999864210 00 00
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceee-ecccCCC----CCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV-SMNHDTQ----SCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~-~~~~~~~----~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
. ..++.+. +.||++++++.+.++..+++.+.++.+..... ..+.++. ..++..++.+|.||+|.|...
T Consensus 315 ~----~~~~~~~-~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p 387 (457)
T PRK11749 315 E----EEVEHAK-EEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTP 387 (457)
T ss_pred H----HHHHHHH-HCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCC
Confidence 0 0123333 57999999999999886665555554421000 0000000 012346899999999999544
No 347
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.38 E-value=0.00077 Score=64.05 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=75.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-..+|||+|..||..+.--.+. |.+|+++|-.+.+|+.. ..
T Consensus 212 k~~~viG~G~IGLE~gsV~~rL-GseVT~VEf~~~i~~~m--------------------------------------D~ 252 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRL-GSEVTVVEFLDQIGGVM--------------------------------------DG 252 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhc-CCeEEEEEehhhhcccc--------------------------------------CH
Confidence 4689999999999999888888 99999999887766421 02
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
++.. ..++.+.+.|++|+++++|.....+.+...-+...+ .++ ++.+++++|.+++|.|.+.
T Consensus 253 Eisk-~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~------ak~---~k~~tle~DvlLVsiGRrP 314 (506)
T KOG1335|consen 253 EISK-AFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVEN------AKT---GKKETLECDVLLVSIGRRP 314 (506)
T ss_pred HHHH-HHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEe------cCC---CceeEEEeeEEEEEccCcc
Confidence 2222 234444568999999999999998765333344332 222 2468999999999999654
No 348
>PLN03000 amine oxidase
Probab=97.38 E-value=0.00021 Score=75.51 Aligned_cols=42 Identities=33% Similarity=0.676 Sum_probs=38.3
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAW 131 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~ 131 (356)
...+|+|||||++|+.+|+.|.+. |++|+|+|+...+||..+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riGGRi~ 224 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPGGRVY 224 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCCCCcc
Confidence 358999999999999999999999 999999999999887654
No 349
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.31 E-value=0.0029 Score=60.81 Aligned_cols=133 Identities=19% Similarity=0.213 Sum_probs=77.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccc----------------hHHHHHHHh
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK----------------PAHIFLDEL 153 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~----------------~~~~~l~~~ 153 (356)
.+|+|.||-||.-|+.|+.|.+..+.+++.+||.+.. .|..|.+....-..- ....+|.+.
T Consensus 5 ~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F---~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 5 VLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF---SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred ceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC---CcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 5899999999999999999998646899999998754 376665543221111 223444444
Q ss_pred CCCcc--ccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC-CeEEE--EEEcceeeecccCCCCCCCCeE
Q 018414 154 GIDYD--EQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKG-GRVGG--VVTNWALVSMNHDTQSCMDPNV 228 (356)
Q Consensus 154 G~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~-~~v~g--v~~~~~~~~~~~~~~~~g~~~~ 228 (356)
|--|. ..+.+. ....+|.+. .+.+... --.++++.+|++|..-+ +.... +.+. +...
T Consensus 82 ~RLy~Fl~~e~f~--i~R~Ey~dY-~~Waa~~-l~~~rfg~~V~~i~~~~~d~~~~~~~~t~--------------~~~~ 143 (436)
T COG3486 82 GRLYEFLNYETFH--IPRREYNDY-CQWAASQ-LPSLRFGEEVTDISSLDGDAVVRLFVVTA--------------NGTV 143 (436)
T ss_pred chHhhhhhhhccc--ccHHHHHHH-HHHHHhh-CCccccCCeeccccccCCcceeEEEEEcC--------------CCcE
Confidence 31111 011111 112333332 2333322 25678899999774322 22222 2221 1358
Q ss_pred EEcCEEEEcCCCCCC
Q 018414 229 MEAKVVVSSCGHDGP 243 (356)
Q Consensus 229 i~Ak~VI~AtGg~~~ 243 (356)
++|+.||+.+|....
T Consensus 144 y~ar~lVlg~G~~P~ 158 (436)
T COG3486 144 YRARNLVLGVGTQPY 158 (436)
T ss_pred EEeeeEEEccCCCcC
Confidence 999999999996653
No 350
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.26 E-value=0.0022 Score=64.30 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=70.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-.|+|||+|..|+-+|..+.+. |. +|++++....+..... . ...++.+.
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~-ga~~Vt~~~~~~~~~~~~~--------------------------~-~~~~~~~~-- 331 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQ-GAKSVTQRDIMPMPPSRRN--------------------------K-NNPWPYWP-- 331 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEccccCCCccccc--------------------------c-ccCCcccc--
Confidence 4699999999999999988887 65 7887775543221000 0 00000000
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC--CCCCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD--TQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~--~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..+ ..+.+. +.|+++++++.++++..+++++.+|..... ..... ....++..++.+|.||+|+|...
T Consensus 332 ~~~---~~~~~~-~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~--~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p 400 (471)
T PRK12810 332 MKL---EVSNAH-EEGVEREFNVQTKEFEGENGKVTGVKVVRT--ELGEGDFEPVEGSEFVLPADLVLLAMGFTG 400 (471)
T ss_pred hHH---HHHHHH-HcCCeEEeccCceEEEccCCEEEEEEEEEE--EecCCCccccCCceEEEECCEEEECcCcCC
Confidence 001 123333 569999999999999766788888765321 01000 00012346899999999999554
No 351
>PLN02976 amine oxidase
Probab=97.23 E-value=0.00036 Score=76.62 Aligned_cols=41 Identities=32% Similarity=0.614 Sum_probs=37.4
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
..+||+|||+|++|+.+|+.|++. |++|+|+|+...+||..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vGGri 732 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIGGRV 732 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCCCce
Confidence 358999999999999999999999 99999999998888764
No 352
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.23 E-value=0.00041 Score=66.77 Aligned_cols=40 Identities=40% Similarity=0.655 Sum_probs=34.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCCCc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~Gg~ 129 (356)
..+|+|||||++||++||+|++. |...++|+|+.+..||-
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw 51 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW 51 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence 36999999999999999999996 34456779999998874
No 353
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.20 E-value=0.0023 Score=61.53 Aligned_cols=105 Identities=23% Similarity=0.237 Sum_probs=66.9
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-.|+|||+|..|+.+|..|.+. |.+ |+|+++...... + ..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~~~~~---------------------------~-----------~~ 213 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRTINEA---------------------------P-----------AG 213 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecchhhC---------------------------C-----------CC
Confidence 3799999999999999999888 887 999987632100 0 00
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC-C-------CCCCCCeEEEcCEEEEcCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD-T-------QSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~-~-------~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
..+.+.+. +.|+++++++.++++..+ +++..+...... ++.. . ...++..++.+|.||+|+|..
T Consensus 214 ----~~~~~~l~-~~gi~i~~~~~v~~i~~~-~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 214 ----KYEIERLI-ARGVEFLELVTPVRIIGE-GRVEGVELAKMR--LGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred ----HHHHHHHH-HcCCEEeeccCceeeecC-CcEeEEEEEEEE--ecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 11223343 569999999998888644 445555432110 0000 0 001234679999999999965
Q ss_pred C
Q 018414 242 G 242 (356)
Q Consensus 242 ~ 242 (356)
.
T Consensus 286 p 286 (352)
T PRK12770 286 P 286 (352)
T ss_pred C
Confidence 4
No 354
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.19 E-value=0.00048 Score=67.16 Aligned_cols=41 Identities=39% Similarity=0.589 Sum_probs=36.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
...|||||||.|||+||.+|-++...+|+|+|..+.+||..
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRI 61 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceE
Confidence 45899999999999999999976478999999999998753
No 355
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.15 E-value=0.0063 Score=63.58 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=69.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
..|+|||||..|+-+|..+.+. |. +|+++.+..... |.. .
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~-ga~~Vt~i~~~~~~~---~~~----------------------------------~- 509 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRH-GASNVTCAYRRDEAN---MPG----------------------------------S- 509 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCCeEEEeEecCCCC---CCC----------------------------------C-
Confidence 4799999999999999988888 75 699998764211 100 0
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCC------CCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQS------CMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~------~g~~~~i~Ak~VI~AtGg~~ 242 (356)
. ..++.+. +.|+++++++.++++..+ ++++.++.+..........++. .++..++.+|.||+|.|-..
T Consensus 510 ~----~e~~~~~-~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p 584 (654)
T PRK12769 510 K----KEVKNAR-EEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNP 584 (654)
T ss_pred H----HHHHHHH-HcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCC
Confidence 0 1123343 569999999999998754 5788777753210000000010 12345799999999999543
No 356
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.14 E-value=0.0032 Score=64.47 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=64.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.|+|||||..|+..|..|++. |.+|+++++.+... ...
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~~----------------------------------------~~~ 182 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDFT----------------------------------------CAK 182 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCccc----------------------------------------cCH
Confidence 4799999999999999999999 99999999875310 001
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEE--EcCE----EEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVM--EAKV----VVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i--~Ak~----VI~AtGg~~ 242 (356)
.+.+++.++.|+++++++.++++.. ++.+..+.... .. +|+..++ .+|. ||+|+|-..
T Consensus 183 ----~~~~~~~~~~gV~i~~~~~V~~i~~-~~~v~~v~~~~------~~---~G~~~~~~~~~D~~~~~Vi~a~G~~P 246 (555)
T TIGR03143 183 ----LIAEKVKNHPKIEVKFNTELKEATG-DDGLRYAKFVN------NV---TGEITEYKAPKDAGTFGVFVFVGYAP 246 (555)
T ss_pred ----HHHHHHHhCCCcEEEeCCEEEEEEc-CCcEEEEEEEE------CC---CCCEEEEeccccccceEEEEEeCCCC
Confidence 1122233356999999999999874 34444433211 01 1122333 3665 999999554
No 357
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.11 E-value=0.0061 Score=64.72 Aligned_cols=108 Identities=13% Similarity=0.163 Sum_probs=69.9
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-.|+|||||..|+-+|..|.+. |.+ |+++++..... +. ...
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~~~---~~----------------------------------~~~ 612 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRSEEE---MP----------------------------------ARL 612 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc---CC----------------------------------CCH
Confidence 4799999999999999999998 887 99999864210 00 000
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceee-ecccCCC-----CCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDTQ-----SCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~-~~~~~~~-----~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.+ ++.+. +.|+++++++.+.++..+ ++++.++.+..... ..+.++. ..++..++.+|.||+|.|-..
T Consensus 613 ~e-----~~~~~-~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p 686 (752)
T PRK12778 613 EE-----VKHAK-EEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSP 686 (752)
T ss_pred HH-----HHHHH-HcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCC
Confidence 11 12233 569999999999998764 46777776531100 0000000 012345799999999999554
No 358
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.08 E-value=0.014 Score=63.81 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=94.9
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-.|+|||+|..|+..|..|++. |. .|+|+|..+...
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~~~~~------------------------------------------ 354 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA-GIAVVAIIDARADVS------------------------------------------ 354 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCceEEEEccCcchh------------------------------------------
Confidence 4799999999999999999998 84 588998764210
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCCCCCccc
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 249 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~~~~~~~ 249 (356)
..+.+.+. +.||+++.++.++++.. ++++.+|.... . .++..++.+|.|+++.|-... .
T Consensus 355 ----~~l~~~L~-~~GV~i~~~~~v~~i~g-~~~v~~V~l~~------~----~g~~~~i~~D~V~va~G~~Pn-----t 413 (985)
T TIGR01372 355 ----PEARAEAR-ELGIEVLTGHVVAATEG-GKRVSGVAVAR------N----GGAGQRLEADALAVSGGWTPV-----V 413 (985)
T ss_pred ----HHHHHHHH-HcCCEEEcCCeEEEEec-CCcEEEEEEEe------c----CCceEEEECCEEEEcCCcCch-----h
Confidence 01234443 67999999999998864 34565665431 0 123467999999999994432 2
Q ss_pred hhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCccceeeeehHHHHHHHHHHhCCCC
Q 018414 250 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPN 329 (356)
Q Consensus 250 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~~g~~l~sG~~~~~l~l~~~~~~~ 329 (356)
..+...+.. +..+.....++..+. .+|+|+.|... |. ......+..|..++..+.++++...
T Consensus 414 ~L~~~lg~~--------~~~~~~~~~~~~~t~--v~gVyaaGD~~----g~----~~~~~A~~eG~~Aa~~i~~~lg~~~ 475 (985)
T TIGR01372 414 HLFSQRGGK--------LAWDAAIAAFLPGDA--VQGCILAGAAN----GL----FGLAAALADGAAAGAAAARAAGFEG 475 (985)
T ss_pred HHHHhcCCC--------eeeccccCceecCCC--CCCeEEeeccC----Cc----cCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 222222210 001100000000011 37888877421 11 1223345788999999999997743
No 359
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.0011 Score=70.26 Aligned_cols=38 Identities=34% Similarity=0.596 Sum_probs=35.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGG 128 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg 128 (356)
-..|.|||+||+||+||-+|-+. |+.|+|.||...+||
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~gg 1822 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGG 1822 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCc
Confidence 36899999999999999999999 999999999998886
No 360
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.02 E-value=0.011 Score=59.17 Aligned_cols=108 Identities=18% Similarity=0.207 Sum_probs=69.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-.|+|||+|..|+-+|..+.+. |. +|+|+++.....-. ...
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~~-Ga~~Vtvv~r~~~~~~~-------------------------------------~~~ 324 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIRL-GAASVTCAYRRDEANMP-------------------------------------GSR 324 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEEecCcccCC-------------------------------------CCH
Confidence 4799999999999999998888 75 79999986431100 000
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceee-ecccCCC-----CCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDTQ-----SCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~-~~~~~~~-----~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
. .++.+. +.|+++++++.++++..+ ++++.++.+..... ..+.++. ..++..++.+|.||+|+|-..
T Consensus 325 ~-----e~~~~~-~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 325 R-----EVANAR-EEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred H-----HHHHHH-hcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCC
Confidence 1 122333 569999999999998764 56777765421000 0000000 012356899999999999554
No 361
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.01 E-value=0.0075 Score=58.13 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=60.8
Q ss_pred ccEEEECCCHHHHHHHHHhhc----CCC--CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeE
Q 018414 91 TDVVVVGAGSAGLSCAYELSK----NPN--IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYV 164 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~----~~G--~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~ 164 (356)
-.|+|||+|.+|+.+|..|++ . | .+|+|+.. +.+..
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~-g~~~~V~li~~-~~~l~------------------------------------ 187 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKR-GLRGQVTLIAG-ASLLP------------------------------------ 187 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhc-CCCceEEEEeC-Ccccc------------------------------------
Confidence 489999999999999999975 3 3 47888832 21100
Q ss_pred EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.....+...+.+.+. +.||+++.+++++++. ++ .+.+. +..++.+|.||+|+|...
T Consensus 188 --~~~~~~~~~~~~~l~-~~gV~v~~~~~v~~i~--~~---~v~~~--------------~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 188 --GFPAKVRRLVLRLLA-RRGIEVHEGAPVTRGP--DG---ALILA--------------DGRTLPADAILWATGARA 243 (364)
T ss_pred --cCCHHHHHHHHHHHH-HCCCEEEeCCeeEEEc--CC---eEEeC--------------CCCEEecCEEEEccCCCh
Confidence 001222333444444 6799999999998874 23 23332 136799999999999554
No 362
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0048 Score=56.87 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcC------CCCeEEEEeccCCCCCccc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKN------PNIQIAIIEQSVSPGGGAW 131 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~------~G~~V~llEk~~~~Gg~~~ 131 (356)
.+++|||+|..||++|+.+.+. |-.+|.+++-...+-..++
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e~T~s~ 50 (342)
T KOG3923|consen 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTEDTTSD 50 (342)
T ss_pred ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCccccccc
Confidence 5899999999999999777662 3578999987655443333
No 363
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.91 E-value=0.01 Score=56.98 Aligned_cols=134 Identities=18% Similarity=0.277 Sum_probs=65.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccCCCC---CccccCCccchh-----hhccc-hH-HHHHHHhCCCcc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPG---GGAWLGGQLFSA-----MVVRK-PA-HIFLDELGIDYD 158 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~~~G---g~~~~~g~~~~~-----~~~~~-~~-~~~l~~~G~~~~ 158 (356)
...|+|||||.++..++..|.++ +..+|.++-|+...- -+.+.. .++.. +.... .. .+.+.+..
T Consensus 190 ~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~n-e~f~P~~v~~f~~l~~~~R~~~l~~~~---- 264 (341)
T PF13434_consen 190 GKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVN-EIFSPEYVDYFYSLPDEERRELLREQR---- 264 (341)
T ss_dssp -EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHH-GGGSHHHHHHHHTS-HHHHHHHHHHTG----
T ss_pred CCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchh-hhcCchhhhhhhcCCHHHHHHHHHHhH----
Confidence 57899999999999999999986 135899998875321 000000 01110 00000 01 11222211
Q ss_pred ccCCeEEEec--hHHHHHHHHHH-HHcCCCcEEEcCeEEEEEEEeC-CeEEEEEEcceeeecccCCCCCCCCeEEEcCEE
Q 018414 159 EQDNYVVIKH--AALFTSTIMSK-LLARPNVKLFNAVAAEDLIVKG-GRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVV 234 (356)
Q Consensus 159 ~~~~~~~~~~--~~~~~~~l~~~-~~~~~gv~i~~~~~v~~i~~~~-~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~V 234 (356)
.-.|..+.. -..+.+.++++ +..+..++++.+++|+++...+ +++.-...+ .. .++..++.+|.|
T Consensus 265 -~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~-------~~---~~~~~~~~~D~V 333 (341)
T PF13434_consen 265 -HTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRH-------RQ---TGEEETLEVDAV 333 (341)
T ss_dssp -GGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEE-------TT---T--EEEEEESEE
T ss_pred -hhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEE-------CC---CCCeEEEecCEE
Confidence 001111110 12223333332 3334568999999999999887 454433222 11 124578999999
Q ss_pred EEcCC
Q 018414 235 VSSCG 239 (356)
Q Consensus 235 I~AtG 239 (356)
|+|||
T Consensus 334 ilATG 338 (341)
T PF13434_consen 334 ILATG 338 (341)
T ss_dssp EE---
T ss_pred EEcCC
Confidence 99999
No 364
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.90 E-value=0.02 Score=61.97 Aligned_cols=175 Identities=17% Similarity=0.226 Sum_probs=91.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-.|+|||||..|+-+|..+.+.+| .+|+++.+....- + + ...
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~---M--------------------------------P--A~~ 711 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQE---M--------------------------------P--AWR 711 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCccc---c--------------------------------c--ccH
Confidence 479999999999999998887635 4899999874200 0 0 000
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccC--CCCCCCCeEEEcCEEEEcCCCCCCCCCc
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHD--TQSCMDPNVMEAKVVVSSCGHDGPFGAT 247 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~--~~~~g~~~~i~Ak~VI~AtGg~~~~~~~ 247 (356)
.+ ++.+. +.|+++++.+.+.++.. ++++.......+....++. ....++..++.+|.||+|+|-...
T Consensus 712 eE-----le~Al-eeGVe~~~~~~p~~I~~-dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pn---- 780 (1019)
T PRK09853 712 EE-----YEEAL-EDGVEFKELLNPESFDA-DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVD---- 780 (1019)
T ss_pred HH-----HHHHH-HcCCEEEeCCceEEEEc-CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCC----
Confidence 11 12222 35899999988888853 4444322111000000000 000123578999999999995432
Q ss_pred cchhhhccCcccccccccccccccccceeeeccccccCceeEeceEEEEecCCcccCCc-cceeeeehHHHHHHHHHHhC
Q 018414 248 GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPT-FGAMMISGQKAAHLALKSLG 326 (356)
Q Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~~~~~~~~~~g~~~~~~~-~g~~l~sG~~~~~l~l~~~~ 326 (356)
...+...|+...-.+... ++ +.. +.-.+++|..|..+. ++. .-..+..|..+++.|+...+
T Consensus 781 -telle~~GL~ld~~G~I~--VD--etl-----qTs~pgVFAaGD~a~--------Gp~tvv~Ai~qGr~AA~nI~~~~~ 842 (1019)
T PRK09853 781 -TELLKANGIPLDKKGWPV--VD--ANG-----ETSLTNVYMIGDVQR--------GPSTIVAAIADARRAADAILSREG 842 (1019)
T ss_pred -hhHHHhcCccccCCCCEE--eC--CCc-----ccCCCCEEEEecccc--------CchHHHHHHHHHHHHHHHHhhhcC
Confidence 222333332000001000 10 100 011377887765321 121 12234788999999998877
Q ss_pred CCCCC
Q 018414 327 QPNAL 331 (356)
Q Consensus 327 ~~~~~ 331 (356)
.....
T Consensus 843 ~~~~~ 847 (1019)
T PRK09853 843 IRSHQ 847 (1019)
T ss_pred CCccc
Confidence 54433
No 365
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.86 E-value=0.013 Score=63.63 Aligned_cols=108 Identities=12% Similarity=0.179 Sum_probs=68.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-+|+|||||..|+-+|..+.+. |.+|+++.+.... .| +. ...
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~~~---~m--------------------------------pa--~~~ 489 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRTKS---EM--------------------------------PA--RVE 489 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEecCcc---cc--------------------------------cc--cHH
Confidence 4799999999999999999999 9999999876320 00 00 011
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC--CeEEEEEEcceee-ecccCC----CCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG--GRVGGVVTNWALV-SMNHDT----QSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~--~~v~gv~~~~~~~-~~~~~~----~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+ ++.+. +.|+++++.+.++++..++ +++.++.+..... ..+.++ ...++..++.+|.||+|.|-..
T Consensus 490 e-----~~~a~-eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p 562 (944)
T PRK12779 490 E-----LHHAL-EEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTA 562 (944)
T ss_pred H-----HHHHH-HCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCC
Confidence 1 11222 4599999999999987653 3676665421000 000000 0023456799999999999543
No 366
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.015 Score=55.69 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=35.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
+|||+|+|.|..=+..+..|+.. |.+|+.+||++.-|+.
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG~~ 42 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYGGE 42 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCCcc
Confidence 49999999999999999999999 9999999999887754
No 367
>PRK13984 putative oxidoreductase; Provisional
Probab=96.44 E-value=0.022 Score=58.94 Aligned_cols=109 Identities=15% Similarity=0.260 Sum_probs=65.9
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC------eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeE
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI------QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYV 164 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~------~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~ 164 (356)
-.|+|||||..|+-+|..|++. +. +|.++....... .+ +
T Consensus 419 k~VvVIGGG~~g~e~A~~l~r~-~~~~~g~~~V~v~~~~r~~~--~~--------------------------------~ 463 (604)
T PRK13984 419 RSLVVIGGGNVAMDIARSMARL-QKMEYGEVNVKVTSLERTFE--EM--------------------------------P 463 (604)
T ss_pred CcEEEECCchHHHHHHHHHHhc-cccccCceEEEEeccccCcc--cC--------------------------------C
Confidence 4899999999999999999876 43 566653211000 00 0
Q ss_pred EEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCC-----CCCCCeEEEcCEEEEcCC
Q 018414 165 VIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKVVVSSCG 239 (356)
Q Consensus 165 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~Ak~VI~AtG 239 (356)
.....+ ..+. +.|+++++++.++++..+++++.++.........+.+.. ..++..++.+|.||+|.|
T Consensus 464 --~~~~e~-----~~~~-~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG 535 (604)
T PRK13984 464 --ADMEEI-----EEGL-EEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIG 535 (604)
T ss_pred --CCHHHH-----HHHH-HcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeC
Confidence 001111 1222 469999999988888767788888765421100111000 012346899999999999
Q ss_pred CCC
Q 018414 240 HDG 242 (356)
Q Consensus 240 g~~ 242 (356)
-..
T Consensus 536 ~~p 538 (604)
T PRK13984 536 QAP 538 (604)
T ss_pred CCC
Confidence 553
No 368
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.44 E-value=0.023 Score=59.31 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=65.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-.|+|||+|..|+-+|..|.+. |. +|+|+++....- +. ...
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~-Ga~~Vtlv~r~~~~~---mp----------------------------------a~~ 365 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRL-GAESVTILYRRTREE---MP----------------------------------ANR 365 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCccc---CC----------------------------------CCH
Confidence 4799999999999999999988 75 699998764200 00 001
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEE--EEEEcceeeecccCC---CCCCCCeEEEcCEEEEcCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVG--GVVTNWALVSMNHDT---QSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~--gv~~~~~~~~~~~~~---~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
.++ +.+. +.|++|++++.+.++..+++++. .+....+....+... ...++..++.+|.||+|.|-.
T Consensus 366 ~ei-----~~a~-~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~ 436 (652)
T PRK12814 366 AEI-----EEAL-AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQ 436 (652)
T ss_pred HHH-----HHHH-HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCc
Confidence 111 2222 45999999999988877666532 222211100000000 001234579999999999954
No 369
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.42 E-value=0.041 Score=60.22 Aligned_cols=108 Identities=14% Similarity=0.209 Sum_probs=68.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-+|+|||||..|+-+|..+.+. |.+ |+++.+..... + + ...
T Consensus 572 k~VvVIGgG~tA~D~A~~a~rl-Ga~~Vtiv~rr~~~e---m--------------------------------~--a~~ 613 (1006)
T PRK12775 572 KSVVVIGAGNTAMDCLRVAKRL-GAPTVRCVYRRSEAE---A--------------------------------P--ARI 613 (1006)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeecCccc---C--------------------------------C--CCH
Confidence 5799999999999999999888 774 77777653210 0 0 000
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceee-ecccCC----CCCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV-SMNHDT----QSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~-~~~~~~----~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.+ ++.+. +.|+++++++.++++..+ ++++.++.+..... ..+..+ ...++..++.+|.||+|.|-..
T Consensus 614 ~e-----~~~a~-eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p 686 (1006)
T PRK12775 614 EE-----IRHAK-EEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKA 686 (1006)
T ss_pred HH-----HHHHH-hCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCC
Confidence 11 12233 579999999999998764 67888876532100 000000 0012345799999999999553
No 370
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.043 Score=51.88 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=60.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
..||.|||||-+|+.+|+-|+-- -..|+++|-.+...
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~eLk------------------------------------------ 390 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPELK------------------------------------------ 390 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh-hheeeeeecchhhh------------------------------------------
Confidence 35899999999999999999875 56799998654211
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcc
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNW 211 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~ 211 (356)
....|.++++.-+|++++.+..-+++.-++++|.|....+
T Consensus 391 --AD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~d 430 (520)
T COG3634 391 --ADAVLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRD 430 (520)
T ss_pred --hHHHHHHHHhcCCCcEEEecceeeEEecCCceecceEEEe
Confidence 1234566666678999999999999987778999987753
No 371
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.37 E-value=0.052 Score=56.61 Aligned_cols=108 Identities=14% Similarity=0.126 Sum_probs=68.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-.|+|||+|..|+-+|..+.+. |. +|+++++..... |. ...
T Consensus 452 k~vvViGgG~~a~d~a~~~~~~-Ga~~Vt~v~rr~~~~---~~----------------------------------~~~ 493 (639)
T PRK12809 452 KRVVVLGGGDTTMDCLRTSIRL-NAASVTCAYRRDEVS---MP----------------------------------GSR 493 (639)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCccc---CC----------------------------------CCH
Confidence 4799999999999999888777 74 799998764321 00 000
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCC------CCCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQ------SCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~------~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.++ ..+. +.|+++++++.++++..+ ++++.++.+..........++ ..++..++.+|.||+|.|-..
T Consensus 494 ~e~-----~~a~-~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 494 KEV-----VNAR-EEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHH-----HHHH-HcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence 111 1222 569999999999999764 567877654210000000000 012356899999999999543
No 372
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.24 E-value=0.011 Score=60.93 Aligned_cols=97 Identities=22% Similarity=0.323 Sum_probs=70.1
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechHH
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~ 171 (356)
.-+|||||.-|+.+|..|... |.+|.+++-.+.. + .+.|++ +.
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~-Gm~~~Vvh~~~~l--------------M-----erQLD~---------------~a-- 189 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDL-GMEVTVVHIAPTL--------------M-----ERQLDR---------------TA-- 189 (793)
T ss_pred CcEEEccchhhhHHHHHHHhC-CCceEEEeecchH--------------H-----HHhhhh---------------HH--
Confidence 479999999999999999999 9999999865420 0 001110 11
Q ss_pred HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
..++++..++.|++++++...+++.. ++++.++...+ +..+.|+.||.|+|-+.
T Consensus 190 --g~lL~~~le~~Gi~~~l~~~t~ei~g-~~~~~~vr~~D--------------G~~i~ad~VV~a~GIrP 243 (793)
T COG1251 190 --GRLLRRKLEDLGIKVLLEKNTEEIVG-EDKVEGVRFAD--------------GTEIPADLVVMAVGIRP 243 (793)
T ss_pred --HHHHHHHHHhhcceeecccchhhhhc-CcceeeEeecC--------------CCcccceeEEEeccccc
Confidence 23344444578999999977777765 67788887763 47799999999999553
No 373
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.048 Score=51.44 Aligned_cols=95 Identities=19% Similarity=0.296 Sum_probs=71.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-||+|||||-+.+-.|+.|++. +.+|+++=|++....
T Consensus 144 k~v~ViGgG~sAve~Al~L~~~-a~~Vtlv~r~~~~ra------------------------------------------ 180 (305)
T COG0492 144 KDVVVIGGGDSAVEEALYLSKI-AKKVTLVHRRDEFRA------------------------------------------ 180 (305)
T ss_pred CeEEEEcCCHHHHHHHHHHHHh-cCeEEEEecCcccCc------------------------------------------
Confidence 4999999999999999999998 899999988753211
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
...+.+++.+..++++++++.+.++.-++ +.++...+. . ++...+..+.|.++.|...
T Consensus 181 --~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--v~~v~l~~~------~----~~~~~~~~~gvf~~iG~~p 238 (305)
T COG0492 181 --EEILVERLKKNVKIEVLTNTVVKEILGDD--VEGVVLKNV------K----GEEKELPVDGVFIAIGHLP 238 (305)
T ss_pred --CHHHHHHHHhcCCeEEEeCCceeEEecCc--cceEEEEec------C----CceEEEEeceEEEecCCCC
Confidence 12344555545589999999999997554 666666431 1 2346788999999999554
No 374
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.05 E-value=0.021 Score=56.04 Aligned_cols=103 Identities=13% Similarity=0.234 Sum_probs=61.7
Q ss_pred cccEEEECCCHHHHHHHHHhhcCC-CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCcccc--CCeEEE
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQ--DNYVVI 166 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~-G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~--~~~~~~ 166 (356)
...++|||+|++|..|+..+.+.+ -.+.+++-+.... ++++. ..+...
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~-----------------------------pydr~~Ls~~~~~ 124 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL-----------------------------PYDRARLSKFLLT 124 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC-----------------------------cccchhcccceee
Confidence 357999999999999999998751 2345555433211 01100 000000
Q ss_pred echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414 167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg 240 (356)
. ...+.....+ ..++.++++++++.|+.+...+..+ .+. +.+++..+.+|+|||.
T Consensus 125 ~-~~~~a~r~~e-~Yke~gIe~~~~t~v~~~D~~~K~l---~~~--------------~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 125 V-GEGLAKRTPE-FYKEKGIELILGTSVVKADLASKTL---VLG--------------NGETLKYSKLIIATGS 179 (478)
T ss_pred c-cccccccChh-hHhhcCceEEEcceeEEeeccccEE---EeC--------------CCceeecceEEEeecC
Confidence 0 0011111111 1236799999999999998877643 232 3578999999999997
No 375
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.91 E-value=0.44 Score=48.01 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=38.0
Q ss_pred CCcEEEcCeEEEEEEEe---CCeEEEEEEcceeeecccCCC-----CCCCCeEEEcCEEEEcCCCCC
Q 018414 184 PNVKLFNAVAAEDLIVK---GGRVGGVVTNWALVSMNHDTQ-----SCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 184 ~gv~i~~~~~v~~i~~~---~~~v~gv~~~~~~~~~~~~~~-----~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.++.|++...-++|+.+ +++|.++++......-....+ ..++..++.++.||.|-|-.+
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~ 354 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKS 354 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCC
Confidence 47999999888888742 268888887531110000000 124556899999999999654
No 376
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=95.90 E-value=0.07 Score=57.99 Aligned_cols=35 Identities=23% Similarity=0.502 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
.-.|+|||||..|+-+|..+.+.+|. +|+++++..
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 35799999999999999988874364 799999864
No 377
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.029 Score=53.37 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=37.1
Q ss_pred CCcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
...|||+|+|.|..-+..+..|+.. |.+|+.||+++.-|..
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYGST 44 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccCcc
Confidence 3469999999999999999999999 9999999999887754
No 378
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.62 E-value=0.17 Score=51.95 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=66.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
-.|+|||+|..|+-+|..+.+. + .+|+|+.+..... + + .+.
T Consensus 268 k~v~ViGgg~~a~d~a~~a~~l-ga~~v~ii~r~~~~~---~--------------------------------~--~~~ 309 (564)
T PRK12771 268 KRVVVIGGGNTAMDAARTARRL-GAEEVTIVYRRTRED---M--------------------------------P--AHD 309 (564)
T ss_pred CCEEEECChHHHHHHHHHHHHc-CCCEEEEEEecCccc---C--------------------------------C--CCH
Confidence 4799999999999999888887 6 6788888764210 0 0 000
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceee-ecccCCCC----CCCCeEEEcCEEEEcCCCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALV-SMNHDTQS----CMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~-~~~~~~~~----~g~~~~i~Ak~VI~AtGg~~ 242 (356)
.. ++.+. +.|+++++++.+.++..+++++.++....... ..+. .+. .++..++.+|.||+|.|-..
T Consensus 310 ~~-----~~~a~-~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~g~~~~i~~D~Vi~A~G~~p 380 (564)
T PRK12771 310 EE-----IEEAL-REGVEINWLRTPVEIEGDENGATGLRVITVEKMELDE-DGRPSPVTGEEETLEADLVVLAIGQDI 380 (564)
T ss_pred HH-----HHHHH-HcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCC-CCCeeecCCceEEEECCEEEECcCCCC
Confidence 11 22233 46999999999999976654444554321000 0000 000 23456899999999999543
No 379
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.61 E-value=0.19 Score=50.60 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=28.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS 125 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~ 125 (356)
-.|+|||+|..|+-+|..+.+..+.+|+++|..+.
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~ 318 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPK 318 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 47999999999999988777762457999997653
No 380
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=95.12 E-value=0.02 Score=55.32 Aligned_cols=30 Identities=37% Similarity=0.563 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeccCCCCCcc
Q 018414 100 SAGLSCAYELSKNPNIQIAIIEQSVSPGGGA 130 (356)
Q Consensus 100 ~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~ 130 (356)
+|||+||++|++. |++|+|+|+.+.+||.+
T Consensus 1 iaGL~aA~~L~~~-G~~v~vlEa~~r~GGr~ 30 (450)
T PF01593_consen 1 IAGLAAAYYLAKA-GYDVTVLEASDRVGGRI 30 (450)
T ss_dssp HHHHHHHHHHHHT-TTEEEEEESSSSSBTTS
T ss_pred ChHHHHHHHHHhC-CCCEEEEEcCCCCCcce
Confidence 5899999999999 99999999999999875
No 381
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.15 Score=45.48 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=71.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
.-.+|||||-+-+.=|..|.+. +.+|-||-|.+..
T Consensus 158 k~laVIGGGDsA~EEA~fLtky-askVyii~Rrd~f-------------------------------------------- 192 (322)
T KOG0404|consen 158 KPLAVIGGGDSAMEEALFLTKY-ASKVYIIHRRDHF-------------------------------------------- 192 (322)
T ss_pred CeeEEEcCcHHHHHHHHHHHhh-ccEEEEEEEhhhh--------------------------------------------
Confidence 4589999999999999999999 9999999887531
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
...+.+.+++++++++++++++.+.+..-+.+.+.++... |.++ ++...+..+-+..+-|+..
T Consensus 193 RAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~~~l~~l~ik------n~~t---ge~~dl~v~GlFf~IGH~P 255 (322)
T KOG0404|consen 193 RASKIMQQRAEKNPNIEVLYNTVAVEALGDGKLLNGLRIK------NVKT---GEETDLPVSGLFFAIGHSP 255 (322)
T ss_pred hHHHHHHHHHhcCCCeEEEechhhhhhccCcccccceEEE------eccc---CcccccccceeEEEecCCc
Confidence 1124556777888999999999887776554444444442 2222 2456788888888888653
No 382
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=94.55 E-value=0.19 Score=48.82 Aligned_cols=98 Identities=20% Similarity=0.280 Sum_probs=61.6
Q ss_pred ccEEEECCCHHHHHHHHHhhcC---------C----CCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKN---------P----NIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDY 157 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~---------~----G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~ 157 (356)
-.++||||||.|...|.+|+.. | ..+|+++|..+.+ ..+++
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i--------------------L~mFd------ 272 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI--------------------LNMFD------ 272 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH--------------------HHHHH------
Confidence 4699999999999999998731 1 4678888876521 01111
Q ss_pred cccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414 158 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A 237 (356)
..+... .+....+.++++..++.|.++.-+ .+ .+.+. +|+..+|..-.+|.|
T Consensus 273 ------------krl~~y-ae~~f~~~~I~~~~~t~Vk~V~~~--~I-~~~~~------------~g~~~~iPYG~lVWa 324 (491)
T KOG2495|consen 273 ------------KRLVEY-AENQFVRDGIDLDTGTMVKKVTEK--TI-HAKTK------------DGEIEEIPYGLLVWA 324 (491)
T ss_pred ------------HHHHHH-HHHHhhhccceeecccEEEeecCc--EE-EEEcC------------CCceeeecceEEEec
Confidence 122222 222334779999999988877422 11 12221 234577888899999
Q ss_pred CCCCC
Q 018414 238 CGHDG 242 (356)
Q Consensus 238 tGg~~ 242 (356)
||...
T Consensus 325 tG~~~ 329 (491)
T KOG2495|consen 325 TGNGP 329 (491)
T ss_pred CCCCC
Confidence 99544
No 383
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=94.19 E-value=0.24 Score=47.98 Aligned_cols=106 Identities=20% Similarity=0.154 Sum_probs=61.6
Q ss_pred EEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechHH
Q 018414 93 VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~ 171 (356)
++|||+|.+|+.+|..+.+ .+..++.++.+........+. +.. .+. .+. . ....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~---~~~-~~~----------~~~--~---------~~~~ 55 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCP---LSL-YVG----------GGI--A---------SLED 55 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCc---cch-HHh----------ccc--C---------CHHH
Confidence 5899999999999998877 236788877776533211100 000 000 000 0 0000
Q ss_pred HHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+... .... .+.+++++.+++|+.+......+ .+. +. .+..|++|+|||....
T Consensus 56 ~~~~-~~~~-~~~~i~~~~~~~v~~id~~~~~v---~~~--------------~g-~~~yd~LvlatGa~~~ 107 (415)
T COG0446 56 LRYP-PRFN-RATGIDVRTGTEVTSIDPENKVV---LLD--------------DG-EIEYDYLVLATGARPR 107 (415)
T ss_pred hccc-chhH-HhhCCEEeeCCEEEEecCCCCEE---EEC--------------CC-cccccEEEEcCCCccc
Confidence 0000 0011 24589999999999997766543 222 12 6889999999997654
No 384
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.14 E-value=0.07 Score=44.45 Aligned_cols=31 Identities=23% Similarity=0.502 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
|+|+|+|..|+..|+.|++. |.+|.++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 68999999999999999998 99999999874
No 385
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.97 E-value=0.067 Score=45.24 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
|.|+|+|..|.++|..|+++ |.+|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 79999999999999999999 99999998863
No 386
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.92 E-value=0.22 Score=49.09 Aligned_cols=47 Identities=11% Similarity=0.018 Sum_probs=32.4
Q ss_pred cCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEE--cCEEEEcCCCCC
Q 018414 182 ARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVME--AKVVVSSCGHDG 242 (356)
Q Consensus 182 ~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~--Ak~VI~AtGg~~ 242 (356)
++.|++++.+++|+.+..+++.+... .. ++..+++ +|+||+|||+..
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~~v~~~-~~-------------~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQTVVVR-NN-------------KTNETYEESYDYLILSPGASP 103 (427)
T ss_pred HhcCCeEEecCEEEEEECCCCEEEEE-EC-------------CCCCEEecCCCEEEECCCCCC
Confidence 35699999899999987666543321 11 0124566 999999999754
No 387
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=93.84 E-value=0.12 Score=49.52 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=33.3
Q ss_pred ccEEEECCCHHHHHHHHHhhcC---CCCeEEEEeccCCCCCc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKN---PNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~---~G~~V~llEk~~~~Gg~ 129 (356)
-.+-|||+|.|||++|..|-+. .|.++.|+|.-+..||+
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGS 64 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGS 64 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCC
Confidence 4688999999999999999873 28899999998877764
No 388
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.61 E-value=0.098 Score=45.38 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=27.5
Q ss_pred EEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
|.|||+|..|...|..++.. |++|+++|.+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECCh
Confidence 79999999999999999999 99999999874
No 389
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.55 E-value=0.089 Score=52.80 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
-.|+|||+|.+|+.+|..|+++ |.+|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3699999999999999999999 99999999654
No 390
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.46 E-value=0.05 Score=49.53 Aligned_cols=33 Identities=42% Similarity=0.731 Sum_probs=28.9
Q ss_pred EEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCC
Q 018414 93 VVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVS 125 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~ 125 (356)
.+|||||+||.+||-.|+. .|..+++|+...+.
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 5899999999999999998 46889999987754
No 391
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=93.44 E-value=0.15 Score=51.09 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.-.|+|||+|.+|+-.|..|++. +.+|+++.+..
T Consensus 204 gk~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~ 237 (461)
T PLN02172 204 NEVVVVIGNFASGADISRDIAKV-AKEVHIASRAS 237 (461)
T ss_pred CCEEEEECCCcCHHHHHHHHHHh-CCeEEEEEeec
Confidence 35799999999999999999998 89999998864
No 392
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.37 E-value=0.095 Score=52.24 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSP 126 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~ 126 (356)
.|+|||.|++|+++|+.|.+. |++|++.|+...+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEEEECCCCch
Confidence 489999999999999999999 9999999987543
No 393
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.20 E-value=0.11 Score=46.81 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
+++|||+|..|...|..|.+. |..|+++|+..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCH
Confidence 689999999999999999999 99999999875
No 394
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.03 E-value=0.14 Score=44.61 Aligned_cols=34 Identities=32% Similarity=0.579 Sum_probs=28.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.-.|+|||+|.++.-+|+.|++. |.+|+++-|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 36799999999999999999999 99999998875
No 395
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.86 E-value=1.9 Score=41.94 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHc--CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 170 ALFTSTIMSKLLA--RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 170 ~~~~~~l~~~~~~--~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
.++...|+++-.. ++++.++..+++..++...+.-.-+.+.. .. .++..++..|.||+|||-.
T Consensus 275 ~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~------~~---~~~~~t~~~D~vIlATGY~ 339 (436)
T COG3486 275 EEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRYRLTLRH------HE---TGELETVETDAVILATGYR 339 (436)
T ss_pred HHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCceEEEEEee------cc---CCCceEEEeeEEEEecccc
Confidence 3455566665432 46799999999999988754322233221 11 2356889999999999944
No 396
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=92.37 E-value=1.3 Score=43.37 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=67.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEech
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHA 169 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~ 169 (356)
+..|||+|+|-+|++..-.|-.. -++|+||...... ++..++... ..+ ..+.
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts-~YdV~vVSPRnyF---------lFTPLLpS~--------------~vG----Tve~ 106 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTS-LYDVTVVSPRNYF---------LFTPLLPST--------------TVG----TVEL 106 (491)
T ss_pred CceEEEEcCchHHHHHHHhcccc-ccceEEeccccce---------EEeeccCCc--------------ccc----ceee
Confidence 46899999999999999998877 8999999876531 111111000 000 1123
Q ss_pred HHHHHHHHHHHHcCC-CcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCCC
Q 018414 170 ALFTSTIMSKLLARP-NVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDGP 243 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~-gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~~ 243 (356)
+.+.+.+..-..+.. +++++.. +.+++..++..|..-.... +. ......+..|++|+|+|+...
T Consensus 107 rSIvEPIr~i~r~k~~~~~y~eA-ec~~iDp~~k~V~~~s~t~-------~~--~~~e~~i~YDyLViA~GA~~~ 171 (491)
T KOG2495|consen 107 RSIVEPIRAIARKKNGEVKYLEA-ECTKIDPDNKKVHCRSLTA-------DS--SDKEFVIGYDYLVIAVGAEPN 171 (491)
T ss_pred hhhhhhHHHHhhccCCCceEEec-ccEeecccccEEEEeeecc-------CC--CcceeeecccEEEEeccCCCC
Confidence 444444444333333 4555544 7777776666544222211 00 012467899999999998653
No 397
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=92.36 E-value=0.2 Score=47.30 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
..|+|||+|..|...|..|++. |.+|+++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 4699999999999999999999 99999999864
No 398
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=92.09 E-value=0.47 Score=46.12 Aligned_cols=98 Identities=14% Similarity=0.255 Sum_probs=62.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCC---CCeEE-EEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEE
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNP---NIQIA-IIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVI 166 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~---G~~V~-llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~ 166 (356)
-.|-|||.|.-|..+|+.|++.. |.+|. |+|.... ..+.|
T Consensus 348 ~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~n--------------------m~kiL---------------- 391 (659)
T KOG1346|consen 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYN--------------------MEKIL---------------- 391 (659)
T ss_pred ceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCC--------------------hhhhh----------------
Confidence 57999999999999999998741 33332 2221100 00000
Q ss_pred echHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 167 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 167 ~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
...+.++-+++++ +.||.++.+..|..+....+.+. ++.+ ++.+++.|.||+|+|-..
T Consensus 392 --Peyls~wt~ekir-~~GV~V~pna~v~sv~~~~~nl~-lkL~--------------dG~~l~tD~vVvavG~eP 449 (659)
T KOG1346|consen 392 --PEYLSQWTIEKIR-KGGVDVRPNAKVESVRKCCKNLV-LKLS--------------DGSELRTDLVVVAVGEEP 449 (659)
T ss_pred --HHHHHHHHHHHHH-hcCceeccchhhhhhhhhccceE-EEec--------------CCCeeeeeeEEEEecCCC
Confidence 1223344566665 67999999988888776554332 3333 257899999999999543
No 399
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.01 E-value=0.17 Score=44.17 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=26.4
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||.|-.|+.+|..||+. |++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence 589999999999999999999 99999999874
No 400
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=91.94 E-value=0.15 Score=47.75 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=30.5
Q ss_pred CcccEEEECCCHHHHHHHHHhhcC-CCCeEEEEeccC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKN-PNIQIAIIEQSV 124 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~-~G~~V~llEk~~ 124 (356)
.++.|+|||||.+|+..|..+.++ +.-+|.|||-..
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 469999999999999999999873 355899999754
No 401
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.78 E-value=0.18 Score=48.64 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=36.2
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGG 129 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~ 129 (356)
.+|||||||.|..-...|.+.++. |.+|+=+|.++.-||.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYGg~ 46 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYGGN 46 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccCCc
Confidence 369999999999999999999999 9999999999887764
No 402
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=91.71 E-value=0.81 Score=46.67 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=29.3
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.-.|+|||+|.+|+=.|..|++. ..+|.+.-|..
T Consensus 183 gKrVlVVG~g~Sg~DIa~el~~~-a~~v~~s~R~~ 216 (531)
T PF00743_consen 183 GKRVLVVGGGNSGADIAVELSRV-AKKVYLSTRRG 216 (531)
T ss_dssp TSEEEEESSSHHHHHHHHHHTTT-SCCEEEECC--
T ss_pred CCEEEEEeCCHhHHHHHHHHHHh-cCCeEEEEecc
Confidence 35799999999999999999998 88999988764
No 403
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=91.70 E-value=0.94 Score=47.11 Aligned_cols=107 Identities=15% Similarity=0.188 Sum_probs=65.5
Q ss_pred ccEEEECCCHHHHHHHHHhhc---CCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEe
Q 018414 91 TDVVVVGAGSAGLSCAYELSK---NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIK 167 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~---~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~ 167 (356)
..++|||-|++|..+..++.+ . -+.++++-..+.+.-.. -+.+..+....
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~-~~~iTvfg~Ep~~nY~R----i~Ls~vl~~~~---------------------- 56 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPD-LYDITVFGEEPRPNYNR----ILLSSVLAGEK---------------------- 56 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcc-cceEEEeccCCCccccc----eeeccccCCCc----------------------
Confidence 478999999999999988877 3 56788876554332100 00111111100
Q ss_pred chHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 168 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 168 ~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
...++...-.+.. +++|++++.+.+|+.|..++..| ... .+.++..|.+|+|||++.
T Consensus 57 ~~edi~l~~~dwy-~~~~i~L~~~~~v~~idr~~k~V---~t~--------------~g~~~~YDkLilATGS~p 113 (793)
T COG1251 57 TAEDISLNRNDWY-EENGITLYTGEKVIQIDRANKVV---TTD--------------AGRTVSYDKLIIATGSYP 113 (793)
T ss_pred cHHHHhccchhhH-HHcCcEEEcCCeeEEeccCcceE---Ecc--------------CCcEeecceeEEecCccc
Confidence 0111111111222 36799999999999998766543 222 247889999999999776
No 404
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.67 E-value=0.26 Score=48.92 Aligned_cols=33 Identities=33% Similarity=0.480 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
-.|+|+|+|..|+.+|..|++. |++|+++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 5799999999999999999999 99999999864
No 405
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.59 E-value=0.25 Score=46.61 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
..|+|||+|..|...|..|++. |.+|+++.|..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 4699999999999999999999 99999999863
No 406
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.56 E-value=0.23 Score=46.86 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
+|.|||+|..|...|..|+++ |++|+++|+..
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 699999999999999999999 99999999875
No 407
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.54 E-value=0.24 Score=38.72 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~ 123 (356)
...|+|||||..|..-+..|.+. |.+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 36799999999999999999999 9999999877
No 408
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.11 E-value=0.32 Score=43.13 Aligned_cols=32 Identities=34% Similarity=0.453 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~ 123 (356)
-.|+|||||.+|..-+..|.+. |.+|+|+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA-GAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 4799999999999999999999 9999999875
No 409
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.85 E-value=0.4 Score=39.37 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCe-EEEEecc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQS 123 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~ 123 (356)
...++|||+|.+|-.+++.|... |.+ |+|+-|.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 46899999999999999999999 877 9999876
No 410
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=90.80 E-value=0.37 Score=42.56 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=31.0
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS 123 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~ 123 (356)
....|+|||+|..|...|..|++. |. +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 357899999999999999999999 88 69999987
No 411
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.71 E-value=0.4 Score=40.62 Aligned_cols=32 Identities=19% Similarity=0.362 Sum_probs=29.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEec
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ 122 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk 122 (356)
.-.|+|||||..|..-+..|.+. |.+|+||..
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~-ga~V~VIsp 44 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT-GAFVTVVSP 44 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcC
Confidence 46799999999999999999999 999999954
No 412
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=90.69 E-value=0.39 Score=41.01 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
..|+|+|+|.+|..|+..|... |.+|+++|...
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 6899999999999999999999 99999999763
No 413
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.60 E-value=0.37 Score=45.05 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS 125 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~ 125 (356)
.|.|||+|..|...|..+++. |++|+++|..+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 699999999999999999999 999999998753
No 414
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.51 E-value=0.34 Score=45.15 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..++++ |.+|+++|...
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 415
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.35 E-value=0.48 Score=37.37 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
|+|+|.|..|...+..|.+. +.+|+++|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCc
Confidence 69999999999999999997 88999999985
No 416
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=90.33 E-value=0.39 Score=42.49 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~ 123 (356)
...|+|||||-.|...+..|.+. |.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 45899999999999999999999 9999999864
No 417
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.12 E-value=0.4 Score=46.57 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
..+|+|||+|.+|+.+|..|... |.+|+++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence 46799999999999999999999 99999999863
No 418
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.98 E-value=0.48 Score=43.78 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=31.6
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV 124 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~ 124 (356)
....|+|||.|..|..+|..|++. | .+++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCE
Confidence 457899999999999999999999 7 6899999774
No 419
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.94 E-value=0.39 Score=44.96 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEec
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQ 122 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk 122 (356)
.|.|||+|..|...|..|++. |.+|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 489999999999999999999 999999998
No 420
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.93 E-value=0.41 Score=44.65 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~ 123 (356)
.|.|||+|..|...|..|++. |.+|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 489999999999999999999 9999999984
No 421
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.66 E-value=0.45 Score=44.39 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..|+++ |++|+++|++.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 489999999999999999999 99999999874
No 422
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=89.56 E-value=3.5 Score=44.89 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=38.6
Q ss_pred CCCcEEEcCeEEEEEEEe-CCeEEEEEEcceee----ecc--cCCC----------CCCCCeEEEcCEEEEcCCC
Q 018414 183 RPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALV----SMN--HDTQ----------SCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 183 ~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~----~~~--~~~~----------~~g~~~~i~Ak~VI~AtGg 240 (356)
+.||+|.+.+...+++.+ +|++.++.+..... ... ..++ ..+...++.||.||+|.|-
T Consensus 652 eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~ 726 (1028)
T PRK06567 652 ALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGI 726 (1028)
T ss_pred HcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEeccc
Confidence 569999999999999875 57888887753210 000 0000 0113468999999999993
No 423
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=89.47 E-value=0.43 Score=39.09 Aligned_cols=33 Identities=24% Similarity=0.653 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
..|+|||+|..|...|..|++. |. +++|+|...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDI 36 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSB
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcc
Confidence 5799999999999999999998 77 799999874
No 424
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.14 E-value=0.55 Score=44.36 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~ 124 (356)
.|.|||+|..|.++|+.|++. | ..+.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCc
Confidence 589999999999999999998 7 5899999865
No 425
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.14 E-value=0.51 Score=44.88 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..++.. |++|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999864
No 426
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.96 E-value=0.39 Score=44.90 Aligned_cols=34 Identities=24% Similarity=0.337 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~ 123 (356)
..-+|+|||||.+|.-+|.-+... |.+|+++|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~gl-gA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGL-GADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhcc-CCeeEEEecC
Confidence 357899999999999999999888 9999999987
No 427
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.90 E-value=0.52 Score=44.03 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..|+++ |.+|+++|+..
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999875
No 428
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.90 E-value=0.71 Score=43.89 Aligned_cols=34 Identities=18% Similarity=0.427 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSVS 125 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~~ 125 (356)
..|.|||+|..|...|+.++.. |+ ++.|+|..+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 5799999999999999999988 75 8999997653
No 429
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.88 E-value=0.48 Score=47.83 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
...|+|+|+|++|+.++..+... |.+|.++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 46899999999999999988888 99999999764
No 430
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.82 E-value=0.59 Score=43.66 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
..|.|||+|..|...|..|+++ |.+|+++|+..
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 3699999999999999999999 99999999864
No 431
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.66 E-value=0.65 Score=44.52 Aligned_cols=34 Identities=24% Similarity=0.561 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 24 ~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 47899999999999999999999 88 899999863
No 432
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=88.40 E-value=0.67 Score=44.41 Aligned_cols=34 Identities=29% Similarity=0.553 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
...|+|||+|..|..+|..|++. |. +++|+|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 46899999999999999999999 87 899999874
No 433
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.34 E-value=0.83 Score=43.32 Aligned_cols=34 Identities=38% Similarity=0.642 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~ 124 (356)
...|.|||+|..|..+|+.|+.. +. .+.|+|...
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~-~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQ-GIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCC
Confidence 46899999999999999999988 66 799999754
No 434
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.24 E-value=0.66 Score=45.65 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.-.|+|+|.|+.|+.+|..|... |.+|+++|..+
T Consensus 202 GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCh
Confidence 35799999999999999999888 99999999864
No 435
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.96 E-value=0.6 Score=43.34 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..+++. |.+|+++|..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCCH
Confidence 599999999999999999999 99999999764
No 436
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.88 E-value=0.7 Score=44.95 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~ 124 (356)
.+|+|||+|-.|..+|..|+++ + .+|++.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CCceEEEEeCCH
Confidence 3799999999999999999998 6 8999999973
No 437
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.87 E-value=0.84 Score=40.29 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
+..|+|||.|..|..+|..|++. |. +++++|...
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 57899999999999999999999 86 899999874
No 438
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=87.82 E-value=0.72 Score=43.06 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS 123 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~ 123 (356)
..|+|||+|.+|.++++.|++. |. +|+|++|.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~ 160 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVD 160 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 5799999999999999999998 76 79999886
No 439
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=87.73 E-value=0.68 Score=44.13 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..|++. |++|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence 699999999999999999999 99999999853
No 440
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=87.68 E-value=0.75 Score=41.41 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=30.0
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCe---EEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQ---IAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~---V~llEk~~ 124 (356)
+..++|+|+|.+|..+|..|.+. |.+ +.|+++..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 45799999999999999999998 874 99999874
No 441
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.55 E-value=0.79 Score=43.27 Aligned_cols=32 Identities=22% Similarity=0.572 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
.|.|||+|..|...|+.++.+ |. +|+++|...
T Consensus 3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence 689999999999999999997 65 899999853
No 442
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.16 E-value=0.95 Score=42.31 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..+++. |.+|.++|+..
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 599999999999999999999 99999999874
No 443
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=86.96 E-value=1 Score=37.09 Aligned_cols=31 Identities=29% Similarity=0.583 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
|+|||.|..|...|..|++. |. +++++|...
T Consensus 2 VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~ 33 (143)
T cd01483 2 VLLVGLGGLGSEIALNLARS-GVGKITLIDFDT 33 (143)
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCC
Confidence 89999999999999999998 77 799999774
No 444
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.91 E-value=0.95 Score=38.96 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
|+|||+|..|...|..|++. |. +++++|...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 89999999999999999999 88 499999874
No 445
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.62 E-value=0.91 Score=43.08 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..|++. |.+|.++.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence 489999999999999999999 99999999853
No 446
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.61 E-value=0.84 Score=44.20 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.+.|||.|-.||..|..|++. |++|+.+|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence 589999999999999999999 99999999764
No 447
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=86.60 E-value=2.7 Score=41.72 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414 170 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 170 ~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg 240 (356)
..+.+.|.+.+. +.|++|++++.|++|..+ ++++.++.+.++ ++ .+..++.||.||+|+..
T Consensus 213 ~~l~~~l~~~l~-~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~------~~---~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYIT-SRGGEVRLNSRLKEIVLNEDGSVKHFVLADG------EG---QRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHH-hcCCEEeCCCeeEEEEECCCCCEEEEEEecC------CC---CceeEEECCEEEEcCCH
Confidence 456677777775 569999999999999864 456777776421 00 01127899999999874
No 448
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=86.31 E-value=1.3 Score=37.98 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=30.0
Q ss_pred CcccEEEECCCH-HHHHHHHHhhcCCCCeEEEEecc
Q 018414 89 ADTDVVVVGAGS-AGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 89 ~~~DVvIIGgG~-aGl~aA~~La~~~G~~V~llEk~ 123 (356)
....|+|||+|- +|..+|..|.++ |.+|.++.+.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~ 77 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK 77 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence 457899999996 699999999998 9999999875
No 449
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.20 E-value=1.1 Score=39.84 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=30.8
Q ss_pred CcccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccC
Q 018414 89 ADTDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSV 124 (356)
Q Consensus 89 ~~~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~ 124 (356)
....|+|||+|..|..+|..|++. |.. ++++|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 357899999999999999999998 775 99999873
No 450
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=86.08 E-value=1 Score=42.19 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCe-EEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQ-IAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~-V~llEk~~ 124 (356)
..++|+|+|.+|.++|+.|++. |.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 4699999999999999999999 886 99998863
No 451
>PRK04148 hypothetical protein; Provisional
Probab=85.85 E-value=0.73 Score=37.89 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
..+++||.| .|...|..|++. |.+|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCH
Confidence 469999999 898889999999 99999999875
No 452
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=85.80 E-value=1 Score=44.46 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
..|.|||.|..|+..|..|+++ |++|+++|+..
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCH
Confidence 3599999999999999999999 99999999864
No 453
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.68 E-value=0.98 Score=44.80 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.++|+|+|..|.++|..|++. |.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 589999999999999999999 99999999754
No 454
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.66 E-value=1.1 Score=42.28 Aligned_cols=32 Identities=22% Similarity=0.504 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..|++. |++|+++|+..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 599999999999999999999 99999999764
No 455
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.48 E-value=1.1 Score=42.58 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..|++. |++|.++++..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999863
No 456
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=85.24 E-value=1 Score=37.18 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 93 VVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
++|+|+|..+...+..++.. |++|+++|..+
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 58999999999999999889 99999999874
No 457
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=84.92 E-value=1 Score=44.32 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||.|..|+..|..|++. |++|+++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEECCH
Confidence 489999999999999999999 99999999864
No 458
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=84.89 E-value=1.1 Score=41.97 Aligned_cols=31 Identities=19% Similarity=0.467 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 93 VVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 93 VvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
|.|||+|..|..+|+.++.+ ++ +|+++|...
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCC
Confidence 57999999999999999987 76 999999874
No 459
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.79 E-value=1.3 Score=41.69 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..|++. |.+|.++++..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 599999999999999999999 99999999863
No 460
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.66 E-value=1.5 Score=41.26 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
..|.|||+|..|...|..|++. |++|.+.++..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 4699999999999999999999 99999999874
No 461
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.53 E-value=1.5 Score=38.65 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~ 123 (356)
..++|+|.|-.|..+|..|.+. |.+|++.|+.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE-GAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 5699999999999999999999 9999999865
No 462
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=84.51 E-value=1.4 Score=41.46 Aligned_cols=32 Identities=34% Similarity=0.601 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHhhcCCC--CeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPN--IQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G--~~V~llEk~~ 124 (356)
.|+|||+|.+|.++|+.|+.. | .++.++|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCc
Confidence 489999999999999999998 7 4799999864
No 463
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=84.29 E-value=1.5 Score=39.89 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=29.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCC----------CCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNP----------NIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~----------G~~V~llEk~~ 124 (356)
...|+|||+|..|..++..|++.+ |.+++|+|...
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 579999999999999999999861 23889998764
No 464
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.12 E-value=1.7 Score=37.80 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=29.3
Q ss_pred cccEEEECC-CHHHHHHHHHhhcCCCCeEEEEecc
Q 018414 90 DTDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 90 ~~DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~ 123 (356)
...++|+|+ |..|..+|..|++. |.+|.++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 357999997 99999999999998 8999999765
No 465
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.10 E-value=1.5 Score=43.09 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.-.|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCCh
Confidence 45799999999999999999988 99999999765
No 466
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.95 E-value=1.8 Score=42.98 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=30.5
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVS 125 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~ 125 (356)
..++|+|.|.+|+++|..|+++ |.+|++.|....
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 3699999999999999999999 999999997543
No 467
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=83.95 E-value=1.6 Score=39.73 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
+..|+|||.|..|..+|..|++. |. +++|+|...
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 57899999999999999999998 75 789998763
No 468
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=83.93 E-value=1.8 Score=41.59 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=32.5
Q ss_pred CCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414 183 RPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 183 ~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg 240 (356)
..|.+|+++++|++|..+++++..+..+ ..++.||.||+|+..
T Consensus 221 ~~g~~i~l~~~V~~I~~~~~~v~v~~~~---------------g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 221 ELGGEIRLNTPVTRIEREDGGVTVTTED---------------GETIEADAVISAVPP 263 (450)
T ss_dssp HHGGGEESSEEEEEEEEESSEEEEEETT---------------SSEEEESEEEE-S-H
T ss_pred hcCceeecCCcceecccccccccccccc---------------ceEEecceeeecCch
Confidence 3466999999999999999887644332 358999999999983
No 469
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.72 E-value=1.6 Score=40.99 Aligned_cols=33 Identities=18% Similarity=0.421 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
..|.|||+|..|...|+.++.. +. +|.++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 3799999999999999999987 65 999999854
No 470
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.66 E-value=1.5 Score=44.28 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
...|+|+|+|..|+.++..+... |.+|+++|.+.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 46899999999999999999888 99999999764
No 471
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=83.51 E-value=3.4 Score=40.42 Aligned_cols=126 Identities=11% Similarity=0.179 Sum_probs=68.8
Q ss_pred CCcccEEEECCCHHHHHHHHHhhc-CCCCeEEEEeccCCCCCccccCCccchhhhccc--hHHHH--HHHh-C----CCc
Q 018414 88 YADTDVVVVGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRK--PAHIF--LDEL-G----IDY 157 (356)
Q Consensus 88 ~~~~DVvIIGgG~aGl~aA~~La~-~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~--~~~~~--l~~~-G----~~~ 157 (356)
+.+...+|||+|.+-.+++..... .++.+|++|-..+..- ++..-+-..++... ..... +.+| | +-|
T Consensus 176 p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---YmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiff 252 (659)
T KOG1346|consen 176 PKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---YMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFF 252 (659)
T ss_pred cccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCc---ccCCCcchhceecCCCChhhheeecccCCccceeEe
Confidence 346789999999988777665543 2388898887654321 11111111111110 00110 0111 0 001
Q ss_pred cccCCeEEEechHHHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEc
Q 018414 158 DEQDNYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSS 237 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~A 237 (356)
. .+.|++ ...++ ..+. +.||-++.+.+|++|..++.. |+.++ +.+|..+..++|
T Consensus 253 e-pd~Ffv--speDL-----p~~~-nGGvAvl~G~kvvkid~~d~~---V~LnD--------------G~~I~YdkcLIA 306 (659)
T KOG1346|consen 253 E-PDGFFV--SPEDL-----PKAV-NGGVAVLRGRKVVKIDEEDKK---VILND--------------GTTIGYDKCLIA 306 (659)
T ss_pred c-CCccee--ChhHC-----cccc-cCceEEEeccceEEeecccCe---EEecC--------------CcEeehhheeee
Confidence 1 111211 22222 2222 678999999999999877664 34543 588999999999
Q ss_pred CCCCC
Q 018414 238 CGHDG 242 (356)
Q Consensus 238 tGg~~ 242 (356)
||+..
T Consensus 307 TG~~P 311 (659)
T KOG1346|consen 307 TGVRP 311 (659)
T ss_pred cCcCc
Confidence 99765
No 472
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=83.44 E-value=4.1 Score=38.95 Aligned_cols=97 Identities=13% Similarity=0.179 Sum_probs=64.7
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechH
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAA 170 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 170 (356)
-.++|||||-.++..|=-++.. |.++-|+=|...+- +.+ ..
T Consensus 190 kr~vvvGaGYIavE~Agi~~gL-gsethlfiR~~kvL-----------------------R~F---------------D~ 230 (478)
T KOG0405|consen 190 KRVVVVGAGYIAVEFAGIFAGL-GSETHLFIRQEKVL-----------------------RGF---------------DE 230 (478)
T ss_pred ceEEEEccceEEEEhhhHHhhc-CCeeEEEEecchhh-----------------------cch---------------hH
Confidence 4799999999888888777777 88888877764311 000 12
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHD 241 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~ 241 (356)
.+.+.+.+.+. ..|++++.++.+++++..++....++... ......|.|+.|+|..
T Consensus 231 ~i~~~v~~~~~-~~ginvh~~s~~~~v~K~~~g~~~~i~~~--------------~~i~~vd~llwAiGR~ 286 (478)
T KOG0405|consen 231 MISDLVTEHLE-GRGINVHKNSSVTKVIKTDDGLELVITSH--------------GTIEDVDTLLWAIGRK 286 (478)
T ss_pred HHHHHHHHHhh-hcceeecccccceeeeecCCCceEEEEec--------------cccccccEEEEEecCC
Confidence 23334445554 67999999999999988755433333321 1233489999999954
No 473
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=83.38 E-value=1.7 Score=40.81 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=28.8
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC--eEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI--QIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~--~V~llEk~~ 124 (356)
..|.|||.|..|.+.|..|.+. |. +|.++++..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCH
Confidence 4699999999999999999988 74 899998864
No 474
>PRK07576 short chain dehydrogenase; Provisional
Probab=83.36 E-value=1.8 Score=39.44 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=29.3
Q ss_pred cccEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
..-++|.|+ |..|..+|.+|+++ |.+|+++.+..
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~-G~~V~~~~r~~ 43 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARA-GANVAVASRSQ 43 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 356899988 78899999999999 99999998763
No 475
>PLN02572 UDP-sulfoquinovose synthase
Probab=82.90 E-value=3.2 Score=41.32 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=27.7
Q ss_pred cEEEECC-CHHHHHHHHHhhcCCCCeEEEEec
Q 018414 92 DVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQ 122 (356)
Q Consensus 92 DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk 122 (356)
.|+|.|| |..|...+.+|.++ |.+|+++++
T Consensus 49 ~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d~ 79 (442)
T PLN02572 49 KVMVIGGDGYCGWATALHLSKR-GYEVAIVDN 79 (442)
T ss_pred EEEEECCCcHHHHHHHHHHHHC-CCeEEEEec
Confidence 5999997 99999999999999 999999875
No 476
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.80 E-value=1.6 Score=41.97 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=25.2
Q ss_pred cEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~ 124 (356)
.|+|+|+|+.||.++..+... | .+|+++|..+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCH
Confidence 599999999999997666667 5 5677777754
No 477
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.79 E-value=2 Score=40.36 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=31.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
...|+|||.|.+|..++..|.+. |.+|.++++..
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 56899999999999999999999 99999999873
No 478
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=82.75 E-value=1.7 Score=40.24 Aligned_cols=33 Identities=18% Similarity=0.232 Sum_probs=28.9
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
..++|+|+|.++.++++.|++. |. +|.|+.|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~ 156 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA-GFTDGTIVARNE 156 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCH
Confidence 3799999999999999999998 76 599998863
No 479
>PRK07774 short chain dehydrogenase; Provisional
Probab=82.65 E-value=2.2 Score=38.15 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=29.5
Q ss_pred ccEEEECC-CHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 91 TDVVVVGA-GSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 91 ~DVvIIGg-G~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
..++|.|+ |..|..+|.+|+++ |.+|+++.+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~ 40 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-GASVVVADINA 40 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45999998 99999999999999 99999998763
No 480
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=82.53 E-value=6.5 Score=39.47 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCcEEEcCeEEEEEEEeC---C--eEEEEEEcceeeecccCCCCCCC-CeEEEcCEEEEcCCCC
Q 018414 171 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG---G--RVGGVVTNWALVSMNHDTQSCMD-PNVMEAKVVVSSCGHD 241 (356)
Q Consensus 171 ~~~~~l~~~~~~~~gv~i~~~~~v~~i~~~~---~--~v~gv~~~~~~~~~~~~~~~~g~-~~~i~Ak~VI~AtGg~ 241 (356)
.+.+.+.+.+. +.|++|+.+++|++|..++ + +++++.+.+ ++ ..++.+|.||+|+...
T Consensus 220 ~l~~pl~~~L~-~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~------------g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 220 YLTKPILEYIE-ARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSK------------PEGKKVIKADAYVAACDVP 283 (474)
T ss_pred hHHHHHHHHHH-HCCCEEECCCEEEEEEEecCCCCceeEEEEEEec------------CCcceEEECCEEEECCChH
Confidence 34566777776 5799999999999998864 2 366666532 11 2458999999999964
No 481
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=82.49 E-value=1.7 Score=43.97 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|.-|...|..+++. |++|+++|+..
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999875
No 482
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=82.47 E-value=3.9 Score=39.61 Aligned_cols=52 Identities=12% Similarity=0.067 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCcEEEcCeEEEEEEEeCCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCC
Q 018414 174 STIMSKLLARPNVKLFNAVAAEDLIVKGGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGH 240 (356)
Q Consensus 174 ~~l~~~~~~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg 240 (356)
+.|.+.+. +.|++|+++++|++|..+++++..+... +..++.||.||+|+-.
T Consensus 201 ~~l~~~l~-~~g~~i~~~~~V~~i~~~~~~~~~~~~~--------------~g~~~~~d~vi~a~p~ 252 (419)
T TIGR03467 201 EPARRWLD-SRGGEVRLGTRVRSIEANAGGIRALVLS--------------GGETLPADAVVLAVPP 252 (419)
T ss_pred HHHHHHHH-HcCCEEEcCCeeeEEEEcCCcceEEEec--------------CCccccCCEEEEcCCH
Confidence 33555554 5689999999999999888765433322 1256889999998773
No 483
>PTZ00117 malate dehydrogenase; Provisional
Probab=82.29 E-value=2.1 Score=40.59 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCC-CeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPN-IQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G-~~V~llEk~~ 124 (356)
...|.|||+|..|...|+.++.. + ..+.|+|...
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~-~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQK-NLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CCCeEEEEECCC
Confidence 45899999999999999999988 7 6899999864
No 484
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.27 E-value=1.7 Score=43.80 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~ 123 (356)
-.|+|+|.|..|++++..|.+. |.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~-G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF-GARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 3699999999999999999888 9999999964
No 485
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=82.27 E-value=1.6 Score=46.20 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..++.. |++|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999875
No 486
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=82.21 E-value=2.1 Score=43.44 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|.-|...|..+++. |+.|+++|+..
T Consensus 9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~ 40 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARA 40 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999875
No 487
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=82.17 E-value=1.8 Score=43.42 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHhhcCC-CCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNP-NIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~-G~~V~llEk~~ 124 (356)
.|.|||.|..|+.+|..|++.+ |++|+.+|...
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 5999999999999999999861 48899999764
No 488
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.13 E-value=2.2 Score=38.60 Aligned_cols=34 Identities=29% Similarity=0.543 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
+..|+|||.|..|..+|..|++. |. +++|+|...
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCE
Confidence 46899999999999999999998 76 889998764
No 489
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=82.11 E-value=2.2 Score=38.38 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=29.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCC-eEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~~ 124 (356)
+..|+|||.|..|...|..|++. |. +++|+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 46899999999999999999998 76 788888763
No 490
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.97 E-value=1.6 Score=44.70 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.4
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
+-.++|+|.|..|...|..|.++ |.+|+++|+++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCH
Confidence 35799999999999999999999 99999999875
No 491
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=81.93 E-value=1.7 Score=41.04 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.+.|+|+|..|...|+.|++. |..|+++=|..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~ 33 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSR 33 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHH
Confidence 489999999999999999999 88888887765
No 492
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.91 E-value=2 Score=42.49 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
...|+|+|.|..|..+|..|... |.+|+++|..+
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp 245 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDP 245 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCc
Confidence 35699999999999999999999 99999999865
No 493
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=81.91 E-value=3 Score=39.66 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=64.4
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccCCCCCccccCCccchhhhccchHHHHHHHhCCCccccCCeEEEechHH
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQDNYVVIKHAAL 171 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~~~Gg~~~~~g~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~ 171 (356)
.-+|||+|-.+|.||-.|+-. |+.|+|.=|.-...| -..+
T Consensus 200 kTLvVGa~YVaLECAgFL~gf-g~~vtVmVRSI~LrG---------------------------------------FDqd 239 (503)
T KOG4716|consen 200 KTLVVGAGYVALECAGFLKGF-GYDVTVMVRSILLRG---------------------------------------FDQD 239 (503)
T ss_pred ceEEEccceeeeehhhhHhhc-CCCcEEEEEEeeccc---------------------------------------ccHH
Confidence 579999999999999999999 999999877632111 0133
Q ss_pred HHHHHHHHHHcCCCcEEEcCeEEEEEEEe-CCeEEEEEEcceeeecccCCCCCCCCeEEEcCEEEEcCCCCC
Q 018414 172 FTSTIMSKLLARPNVKLFNAVAAEDLIVK-GGRVGGVVTNWALVSMNHDTQSCMDPNVMEAKVVVSSCGHDG 242 (356)
Q Consensus 172 ~~~~l~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~~~~~~~~~~g~~~~i~Ak~VI~AtGg~~ 242 (356)
+.+.+.+.+. +.|++|+..+..+.+++- +++.. |.... ..+ ++...-..+-|+.|-|..+
T Consensus 240 mae~v~~~m~-~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~------t~t---~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 240 MAELVAEHME-ERGIKFLRKTVPERVEQIDDGKLR-VFYKN------TNT---GEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred HHHHHHHHHH-HhCCceeecccceeeeeccCCcEE-EEeec------ccc---cccccchhhhhhhhhcccc
Confidence 3444444444 679999988877777764 44432 22211 111 1223345678999999654
No 494
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=81.88 E-value=1.8 Score=44.12 Aligned_cols=32 Identities=31% Similarity=0.525 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~ 123 (356)
..++|+|+|.+|.++|+.|++. |.+|+++.|.
T Consensus 380 k~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 4589999999999999999999 8999999875
No 495
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=81.87 E-value=1.8 Score=40.08 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||.|..|.+.|..|.++ |.+|.++++..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 489999999999999999999 99999999864
No 496
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=81.86 E-value=2 Score=40.17 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 90 DTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 90 ~~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
...++|||.|..|..+|..|... |.+|+++++..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL-GARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 45799999999999999999999 99999999863
No 497
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=81.79 E-value=2 Score=40.03 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=28.3
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCC-eEEEEecc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNI-QIAIIEQS 123 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~-~V~llEk~ 123 (356)
..++|+|+|.++-++++.|++. |. ++.|+.|.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~ 160 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLD 160 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCC
Confidence 4699999999999999999998 65 68898876
No 498
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=81.75 E-value=2.1 Score=39.55 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=29.2
Q ss_pred ccEEEECCCHHHHHHHHHhhcCCCCeEEEEecc
Q 018414 91 TDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQS 123 (356)
Q Consensus 91 ~DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~ 123 (356)
..++|+|+|.+|.+++..|++. |.+|.++.|.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCC
Confidence 4699999999999999999998 8999999875
No 499
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=81.55 E-value=1.8 Score=45.85 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHhhcCCCCeEEEEeccC
Q 018414 92 DVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGgG~aGl~aA~~La~~~G~~V~llEk~~ 124 (356)
.|.|||+|..|...|..++.. |++|+++|...
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 599999999999999999999 99999999874
No 500
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=81.51 E-value=2.7 Score=34.74 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=27.9
Q ss_pred cEEEECC-CHHHHHHHHHhhcCC-CCeEEEEeccC
Q 018414 92 DVVVVGA-GSAGLSCAYELSKNP-NIQIAIIEQSV 124 (356)
Q Consensus 92 DVvIIGg-G~aGl~aA~~La~~~-G~~V~llEk~~ 124 (356)
.|.|||+ |..|..+|+.|...+ ..++.|+|...
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5899999 999999999999862 34699999874
Done!