BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018415
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQK|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Adp And Ip6
pdb|4AXF|A Chain A, Insp5 2-K In Complex With Ins(3,4,5,6)p4 Plus Amppnp
Length = 456
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/352 (59%), Positives = 268/352 (76%), Gaps = 8/352 (2%)
Query: 1 MEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLESVQKNVTGQRPAWRVDAADIKIPCDSV 60
+EQ YV+ ++ PLLGPK++DAG+ V V++EFLE V K VT QRP WRV+AA++ DS
Sbjct: 89 LEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQRPLWRVNAANVDTSHDSA 148
Query: 61 LLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSE 120
L+++DH+LF QGI C++VEIKPKCGFLP SRFI +EN +K SV+RF++HQ LKL
Sbjct: 149 LILNDHSLFSQGITSGGDCISVEIKPKCGFLPTSRFIGKENMLKTSVSRFKMHQLLKLEY 208
Query: 121 QEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLGGGMCGNSVA 180
EISE SEYDPLDLFSGSKER+ +AIKALY+ PQNN RVFLNGSLI G G S
Sbjct: 209 IEISEESEYDPLDLFSGSKERVLEAIKALYSTPQNNFRVFLNGSLILGGSGESTGRTSPE 268
Query: 181 VGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIHAYY 240
+G AFEDALK I++++G RT+ F+QLV++ V+ +G+LDRLLE+QKLD DIEGAIH YY
Sbjct: 269 IGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIHCYY 328
Query: 241 NIISQPCRVCRELDEEKASHLCTSLHSIPMNESLKIVKDYLIAATAKDCSLMICFRPKS- 299
+II+QPC +CRE +A SLH++P++ESLKIVK+YLIAATAKDCS+MI F+ ++
Sbjct: 329 DIINQPCPICREGRPLEAE---LSLHALPLDESLKIVKEYLIAATAKDCSIMISFQSRNA 385
Query: 300 --NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKPFKKMEEHYAKDKKISSCY 349
+E SG Y + L+ TNQ FDYK +F+DL LKP K+ME +Y DKKI S Y
Sbjct: 386 WDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFY 435
>pdb|4AXE|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Adp
Length = 456
Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/352 (59%), Positives = 268/352 (76%), Gaps = 8/352 (2%)
Query: 1 MEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLESVQKNVTGQRPAWRVDAADIKIPCDSV 60
+EQ YV+ ++ PLLGPK++DAG+ V V++EFLE V K VT QRP WRV+AA++ DS
Sbjct: 89 LEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQRPLWRVNAANVDTSHDSA 148
Query: 61 LLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSE 120
L+++DH+LF QGI C++VEIKPKCGFLP SRFI +EN +K SV+RF++HQ LKL
Sbjct: 149 LILNDHSLFSQGITSGGDCISVEIKPKCGFLPTSRFIGKENMLKTSVSRFKMHQLLKLEY 208
Query: 121 QEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLGGGMCGNSVA 180
EISE SEYDPLDLFSGSKER+ +AIKALY+ PQNN RVFLNGSLI G G S
Sbjct: 209 IEISEESEYDPLDLFSGSKERVLEAIKALYSTPQNNFRVFLNGSLILGGSGESTGRTSPE 268
Query: 181 VGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIHAYY 240
+G AFEDALK I++++G RT+ F+QLV++ V+ +G+LDRLLE+QKLD DIEGAIH YY
Sbjct: 269 IGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIHCYY 328
Query: 241 NIISQPCRVCRELDEEKASHLCTSLHSIPMNESLKIVKDYLIAATAKDCSLMICFRPKS- 299
+II+QPC +C+E +A SLH++P++ESLKIVK+YLIAATAKDCS+MI F+ ++
Sbjct: 329 DIINQPCPICKEGRPLEAE---LSLHALPLDESLKIVKEYLIAATAKDCSIMISFQSRNA 385
Query: 300 --NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKPFKKMEEHYAKDKKISSCY 349
+E SG Y + L+ TNQ FDYK +F+DL LKP K+ME +Y DKKI S Y
Sbjct: 386 WDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFY 435
>pdb|2XAL|A Chain A, Lead Derivative Of Inositol 1,3,4,5,6-Pentakisphosphate 2-
Kinase From A. Thaliana In Complex With Adp And Ip6.
pdb|2XAL|B Chain B, Lead Derivative Of Inositol 1,3,4,5,6-Pentakisphosphate 2-
Kinase From A. Thaliana In Complex With Adp And Ip6.
pdb|2XAM|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|2XAM|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|2XAN|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Amp Pnp And Ip5
pdb|2XAN|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Amp Pnp And Ip5
pdb|2XAO|A Chain A, Inositol 1,3,4,5,6-pentakisphosphate 2-kinase From A.
Thaliana In Complex With Ip5
pdb|2XAO|B Chain B, Inositol 1,3,4,5,6-pentakisphosphate 2-kinase From A.
Thaliana In Complex With Ip5
pdb|2XAR|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Ip6.
pdb|2XAR|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Ip6
Length = 451
Score = 410 bits (1053), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/352 (59%), Positives = 268/352 (76%), Gaps = 8/352 (2%)
Query: 1 MEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLESVQKNVTGQRPAWRVDAADIKIPCDSV 60
+EQ YV+ ++ PLLGPK++DAG+ V V++EFLE V K VT QRP WRV+AA++ DS
Sbjct: 84 LEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQRPLWRVNAANVDTSHDSA 143
Query: 61 LLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSE 120
L+++DH+LF QGI C++VEIKPKCGFLP SRFI +EN +K SV+RF++HQ LKL
Sbjct: 144 LILNDHSLFSQGITSGGDCISVEIKPKCGFLPTSRFIGKENMLKTSVSRFKMHQLLKLEY 203
Query: 121 QEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLGGGMCGNSVA 180
EISE SEYDPLDLFSGSKER+ +AIKALY+ PQNN RVFLNGSLI G G S
Sbjct: 204 IEISEESEYDPLDLFSGSKERVLEAIKALYSTPQNNFRVFLNGSLILGGSGESTGRTSPE 263
Query: 181 VGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIHAYY 240
+G AFEDALK I++++G RT+ F+QLV++ V+ +G+LDRLLE+QKLD DIEGAIH YY
Sbjct: 264 IGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIHCYY 323
Query: 241 NIISQPCRVCRELDEEKASHLCTSLHSIPMNESLKIVKDYLIAATAKDCSLMICFRPKS- 299
+II+QPC +C+E +A SLH++P++ESLKIVK+YLIAATAKDCS+MI F+ ++
Sbjct: 324 DIINQPCPICKEGRPLEAE---LSLHALPLDESLKIVKEYLIAATAKDCSIMISFQSRNA 380
Query: 300 --NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKPFKKMEEHYAKDKKISSCY 349
+E SG Y + L+ TNQ FDYK +F+DL LKP K+ME +Y DKKI S Y
Sbjct: 381 WDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFY 430
>pdb|3UDS|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp.
pdb|3UDS|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp.
pdb|3UDT|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip5.
pdb|3UDT|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip5
Length = 493
Score = 409 bits (1052), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/352 (59%), Positives = 268/352 (76%), Gaps = 8/352 (2%)
Query: 1 MEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLESVQKNVTGQRPAWRVDAADIKIPCDSV 60
+EQ YV+ ++ PLLGPK++DAG+ V V++EFLE V K VT QRP WRV+AA++ DS
Sbjct: 118 LEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQRPLWRVNAANVDTSHDSA 177
Query: 61 LLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSE 120
L+++DH+LF QGI C++VEIKPKCGFLP SRFI +EN +K SV+RF++HQ LKL
Sbjct: 178 LILNDHSLFSQGITSGGDCISVEIKPKCGFLPTSRFIGKENILKTSVSRFKMHQLLKLEY 237
Query: 121 QEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLGGGMCGNSVA 180
EISE SEYDPLDLFSGSKER+ +AIKALY+ PQNN RVFLNGSLI G G S
Sbjct: 238 IEISEESEYDPLDLFSGSKERVLEAIKALYSTPQNNFRVFLNGSLILGGSGESTGRTSPE 297
Query: 181 VGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIHAYY 240
+G AFEDALK I++++G RT+ F+QLV++ V+ +G+LDRLLE+QKLD DIEGAIH YY
Sbjct: 298 IGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIHCYY 357
Query: 241 NIISQPCRVCRELDEEKASHLCTSLHSIPMNESLKIVKDYLIAATAKDCSLMICFRPKS- 299
+II+QPC +C+E +A SLH++P++ESLKIVK+YLIAATAKDCS+MI F+ ++
Sbjct: 358 DIINQPCPICKEGRPLEAE---LSLHALPLDESLKIVKEYLIAATAKDCSIMISFQSRNA 414
Query: 300 --NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKPFKKMEEHYAKDKKISSCY 349
+E SG Y + L+ TNQ FDYK +F+DL LKP K+ME +Y DKKI S Y
Sbjct: 415 WDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFY 464
>pdb|4AXD|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase In Complex
With Amppnp
Length = 456
Score = 405 bits (1042), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/352 (59%), Positives = 267/352 (75%), Gaps = 8/352 (2%)
Query: 1 MEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLESVQKNVTGQRPAWRVDAADIKIPCDSV 60
+EQ YV+ ++ PLLGPK++DAG+ V V++EFLE V K VT QRP RV+AA++ DS
Sbjct: 89 LEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQRPLARVNAANVDTSHDSA 148
Query: 61 LLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSE 120
L+++DH+LF QGI C++VEIKPKCGFLP SRFI +EN +K SV+RF++HQ LKL
Sbjct: 149 LILNDHSLFSQGITSGGDCISVEIKPKCGFLPTSRFIGKENMLKTSVSRFKMHQLLKLEY 208
Query: 121 QEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLGGGMCGNSVA 180
EISE SEYDPLDLFSGSKER+ +AIKALY+ PQNN RVFLNGSLI G G S
Sbjct: 209 IEISEESEYDPLDLFSGSKERVLEAIKALYSTPQNNFRVFLNGSLILGGSGESTGRTSPE 268
Query: 181 VGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIHAYY 240
+G AFEDALK I++++G RT+ F+QLV++ V+ +G+LDRLLE+QKLD DIEGAIH YY
Sbjct: 269 IGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIHCYY 328
Query: 241 NIISQPCRVCRELDEEKASHLCTSLHSIPMNESLKIVKDYLIAATAKDCSLMICFRPKS- 299
+II+QPC +CRE +A SLH++P++ESLKIVK+YLIAATAKDCS+MI F+ ++
Sbjct: 329 DIINQPCPICREGRPLEAE---LSLHALPLDESLKIVKEYLIAATAKDCSIMISFQSRNA 385
Query: 300 --NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKPFKKMEEHYAKDKKISSCY 349
+E SG Y + L+ TNQ FDYK +F+DL LKP K+ME +Y DKKI S Y
Sbjct: 386 WDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFY 435
>pdb|4AXC|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Apo Form
Length = 456
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/352 (58%), Positives = 267/352 (75%), Gaps = 8/352 (2%)
Query: 1 MEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLESVQKNVTGQRPAWRVDAADIKIPCDSV 60
+EQ YV+ ++ PLLGPK++DAG+ V V++EFLE V K VT QRP RV+AA++ DS
Sbjct: 89 LEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQRPLARVNAANVDTSHDSA 148
Query: 61 LLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSE 120
L+++DH+LF QGI C++VEIKPKCGFLP SRFI +EN +K SV+RF++HQ LKL
Sbjct: 149 LILNDHSLFSQGITSGGDCISVEIKPKCGFLPTSRFIGKENMLKTSVSRFKMHQLLKLEY 208
Query: 121 QEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLGGGMCGNSVA 180
EISE SEYDPLDLFSGSKER+ +AIKALY+ PQNN RVFLNGSLI G G S
Sbjct: 209 IEISEESEYDPLDLFSGSKERVLEAIKALYSTPQNNFRVFLNGSLILGGSGESTGRTSPE 268
Query: 181 VGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIHAYY 240
+G AFEDALK I++++G RT+ F+QLV++ V+ +G+LDRLLE+QKLD DIEGAIH YY
Sbjct: 269 IGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIHCYY 328
Query: 241 NIISQPCRVCRELDEEKASHLCTSLHSIPMNESLKIVKDYLIAATAKDCSLMICFRPKS- 299
+II+QPC +C+E +A SLH++P++ESLKIVK+YLIAATAKDCS+MI F+ ++
Sbjct: 329 DIINQPCPICKEGRPLEAE---LSLHALPLDESLKIVKEYLIAATAKDCSIMISFQSRNA 385
Query: 300 --NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKPFKKMEEHYAKDKKISSCY 349
+E SG Y + L+ TNQ FDYK +F+DL LKP K+ME +Y DKKI S Y
Sbjct: 386 WDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFY 435
>pdb|3UDZ|A Chain A, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6.
pdb|3UDZ|B Chain B, Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase From A.
Thaliana In Complex With Adp And Ip6
Length = 493
Score = 403 bits (1035), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/358 (57%), Positives = 268/358 (74%), Gaps = 8/358 (2%)
Query: 1 MEQMYVEKIMSPLLGPKYIDAGMCVRVTREFLESVQKNVTGQRPAWRVDAADIKIPCDSV 60
+EQ YV+ ++ PLLGPK++DAG+ V V++EFLE V K VT QRP WRV+AA++ DS
Sbjct: 118 LEQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQRPLWRVNAANVDTSHDSA 177
Query: 61 LLMSDHTLFPQGILGEEPCLAVEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSE 120
L+++DH+LF QGI C++VEIKPKCGFLP SRFI +EN +K SV+RF+ HQ LKL
Sbjct: 178 LILNDHSLFSQGITSGGDCISVEIKPKCGFLPTSRFIGKENILKTSVSRFKXHQLLKLEY 237
Query: 121 QEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLGGGMCGNSVA 180
EISE SEYDPLDLFSGSKER+ +AIKALY+ PQNN RVFLNGSLI G G S
Sbjct: 238 IEISEESEYDPLDLFSGSKERVLEAIKALYSTPQNNFRVFLNGSLILGGSGESTGRTSPE 297
Query: 181 VGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIHAYY 240
+G AFEDALK I++++G RT+ F+QLV++ V+ +G+LDRLLE+QKLD DIEGAIH YY
Sbjct: 298 IGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIHCYY 357
Query: 241 NIISQPCRVCRELDEEKASHLCTSLHSIPMNESLKIVKDYLIAATAKDCSLMICFRPKS- 299
+II+QPC +C+E +A SLH++P++ESLKIVK+YLIAATAKDCS+ I F+ ++
Sbjct: 358 DIINQPCPICKEGRPLEAE---LSLHALPLDESLKIVKEYLIAATAKDCSIXISFQSRNA 414
Query: 300 --NEFSGSYNSIYLESTNQVFDYKAYFVDLDLKPFKKMEEHYAKDKKISSCYIQMLKS 355
+E SG Y + L+ TNQ FDYK +F+DL LKP K+ E +Y DKKI S Y + K+
Sbjct: 415 WDSEPSGDY--VSLKPTNQTFDYKVHFIDLSLKPLKRXESYYKLDKKIISFYNRKQKA 470
>pdb|1J3B|A Chain A, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1J3B|B Chain B, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|C Chain C, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|D Chain D, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
Length = 529
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 62 LMSDHTLF-PQGILGEEPCLAVEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSE 120
++ +HTL +G+L L V+ P G P +F+ E ++ + +++Q
Sbjct: 23 VLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEA 82
Query: 121 ---------QEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNL 157
Q +SER Y DL++G+ R A++ + +P + L
Sbjct: 83 FEALYQRVVQYLSERDLYV-QDLYAGADRRYRLAVRVVTESPWHAL 127
>pdb|4FQZ|A Chain A, Crystal Structure Of A Protease-Resistant Mutant Form Of
Human Galectin-8
pdb|3VKL|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKL|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Two Lactose Molecules
pdb|3VKM|A Chain A, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
pdb|3VKM|B Chain B, Protease-Resistant Mutant Form Of Human Galectin-8 In
Complex With Sialyllactose And Lactose
Length = 291
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 122 EISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLG---GGMCGNS 178
E++ ++ +DL +G + I AL+ NP+ N++ F+ S + S G +
Sbjct: 180 EVNANAKSFNVDLLAGKSKDI-----ALHLNPRLNIKAFVRNSFLQESWGEEERNITSFP 234
Query: 179 VAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIH 237
+ G FE + C ++ ++ VH R E+ +D +I G IH
Sbjct: 235 FSPGMYFEMIIYCDVRE---------FKVAVNGVHSLEYKHRFKELSSIDTLEINGDIH 284
>pdb|3OJB|A Chain A, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
pdb|3OJB|B Chain B, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
pdb|3OJB|C Chain C, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
pdb|3OJB|D Chain D, Crystal Structure Of C-Terminal Domain Of Human Galectin-8
Length = 139
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 122 EISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLG---GGMCGNS 178
E++ ++ +DL +G + I AL+ NP+ N++ F+ S + S G +
Sbjct: 30 EVNANAKSFNVDLLAGKSKDI-----ALHLNPRLNIKAFVRNSFLQESWGEEERNITSFP 84
Query: 179 VAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIH 237
+ G FE + C ++ ++ VH R E+ +D +I G IH
Sbjct: 85 FSPGMYFEMIIYCDVRE---------FKVAVNGVHSLEYKHRFKELSSIDTLEINGDIH 134
>pdb|2YRO|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
Protein From Human Galectin-8
Length = 155
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 122 EISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLIFGSLG---GGMCGNS 178
E++ ++ +DL +G + I AL+ NP+ N++ F+ S + S G +
Sbjct: 38 EVNANAKSFNVDLLAGKSKDI-----ALHLNPRLNIKAFVRNSFLQESWGEEERNITSFP 92
Query: 179 VAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIH 237
+ G FE + C ++ ++ VH R E+ +D +I G IH
Sbjct: 93 FSPGMYFEMIIYCDVRE---------FKVAVNGVHSLEYKHRFKELSSIDTLEINGDIH 142
>pdb|1YBF|A Chain A, Crystal Structure Of Amp Nucleosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|1YBF|B Chain B, Crystal Structure Of Amp Nucleosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|1YBF|C Chain C, Crystal Structure Of Amp Nucleosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 268
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 54 KIPCDSVLLMSDHTLFPQGILGEE 77
KIP ++LL+SD FP+G+ EE
Sbjct: 199 KIPXGALLLISDRPXFPEGVKTEE 222
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 114 QALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNN 156
QALK +++ER+E LD G E I + I+ L +NN
Sbjct: 3 QALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNN 45
>pdb|1UKX|A Chain A, Solution Structure Of The Rwd Domain Of Mouse Gcn2
Length = 137
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 67 TLFPQGILGEEPCLAVEIKPKC 88
L+PQG+ GEE + VE++ KC
Sbjct: 50 VLYPQGLAGEEVYVQVELRVKC 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,959,119
Number of Sequences: 62578
Number of extensions: 392497
Number of successful extensions: 1120
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1095
Number of HSP's gapped (non-prelim): 16
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)