Query 018415
Match_columns 356
No_of_seqs 149 out of 209
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 14:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4axd_A Inositol-pentakisphosph 100.0 7E-101 3E-105 760.6 28.6 352 2-356 90-442 (456)
2 2wul_A Glutaredoxin related pr 48.8 27 0.00092 27.9 5.2 53 106-166 33-87 (118)
3 3l4n_A Monothiol glutaredoxin- 22.5 1.4E+02 0.0049 23.6 5.5 58 105-166 21-81 (127)
4 3zyw_A Glutaredoxin-3; metal b 20.6 1.1E+02 0.0038 23.4 4.3 53 105-166 28-82 (111)
5 1t1v_A SH3BGRL3, SH3 domain-bi 17.8 1.4E+02 0.0048 21.6 4.2 37 128-166 34-71 (93)
6 2ntx_A EMB|CAB41934.1, prone8; 14.2 30 0.001 32.6 -0.6 32 86-119 157-193 (365)
7 3ipz_A Monothiol glutaredoxin- 14.0 1.9E+02 0.0065 21.8 4.2 51 107-166 32-84 (109)
8 3o7b_A Ribosome biogenesis NEP 13.9 1.5E+02 0.0051 26.7 3.9 33 136-168 84-119 (244)
9 2wem_A Glutaredoxin-related pr 12.5 2.5E+02 0.0085 21.7 4.5 52 107-166 34-87 (118)
10 3gx8_A Monothiol glutaredoxin- 12.4 1.9E+02 0.0065 22.4 3.8 54 107-166 30-85 (121)
No 1
>4axd_A Inositol-pentakisphosphate 2-kinase; transferase, inositol kinase, phytic acid, protein kinase, I signalling; HET: ANP CIT; 2.05A {Arabidopsis thaliana} PDB: 4axc_A 4aqk_A* 4axf_A* 4axe_A* 2xam_A* 2xal_A* 2xan_A* 2xao_A* 2xar_A* 3udz_A* 3udt_A* 3uds_A*
Probab=100.00 E-value=7.4e-101 Score=760.57 Aligned_cols=352 Identities=59% Similarity=0.922 Sum_probs=328.6
Q ss_pred chhhHHhhhccCCCCCCCCCCeEEEcCHHHHHHHHHHhhcCCCccccCCCcCcCCCceEEEecCCCCCCCCCCCCCCcee
Q 018415 2 EQMYVEKIMSPLLGPKYIDAGMCVRVTREFLESVQKNVTGQRPAWRVDAADIKIPCDSVLLMSDHTLFPQGILGEEPCLA 81 (356)
Q Consensus 2 ~~~f~~~v~~pLlg~~~v~~~~lV~l~~~fl~~l~~~i~~~RP~~R~~~~~id~~~~~~ll~~D~t~~~~~~~~~~~~i~ 81 (356)
.+.|+++||+||||++||++|++|.|+.+||++|++.+.++||+||++++++|+.+++|+||+|||.+|.+.++++++++
T Consensus 90 ~~~F~~~VI~PLLG~~~V~~~eLV~Lp~eFL~~L~~~i~~~RP~~R~~~~~lD~~~~~alL~~D~t~~p~~~~~~~~~i~ 169 (456)
T 4axd_A 90 EQRYVQNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQRPLARVNAANVDTSHDSALILNDHSLFSQGITSGGDCIS 169 (456)
T ss_dssp HHHHCCCCCHHHHCSTTBCCCEEEEECHHHHHHHHHHHHHHSCGGGTTSCCBCTTCCEEEEEECTTCSSSSCCTTCCCEE
T ss_pred HHHHHHHHHHhhcCccccCCceEEEcCHHHHHHHHHHhhccCchhhcccccccccCceEEEccccccCCCCccCCCceEE
Confidence 36799999999999999999999999999999999999999999999988999999999999999999987666788999
Q ss_pred EEecCcccccCCCCCcccccccccCCchHHHHHHhhhcccccccCCCCCccCCCCCChHHHHHHHHHHHhCCccccceee
Q 018415 82 VEIKPKCGFLPISRFIAEENAIKRSVTRFQLHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFL 161 (356)
Q Consensus 82 vEiKPKwgfl~~~~~~~~~~~~k~~~cR~c~~q~~K~~~~~~~~~s~YCPlDLfSg~~~ri~~Al~~L~~~pqNNlrvf~ 161 (356)
|||||||||+|+++++++++++|+++|||||||.+|.++|++++.|.|||+|||||+.+||++||++||.+||||||||+
T Consensus 170 VEIKPKwGflp~s~~i~~~~~~k~~~CRfCm~Q~~K~~~g~~~~~S~YCPLDLfSg~~~r~~~Al~~L~~~PqNNlrvF~ 249 (456)
T 4axd_A 170 VEIKPKCGFLPTSRFIGKENMLKTSVSRFKMHQLLKLEYIEISEESEYDPLDLFSGSKERVLEAIKALYSTPQNNFRVFL 249 (456)
T ss_dssp EEECCCCCSCCCSTTCCGGGGGGGTSCHHHHHHHHHHHTTSSSSCCSCCHHHHTSSCHHHHHHHHHHHHHSCTTTEEEEE
T ss_pred EEEcccccccCCCCCCCcccccccccCHHHHHHHHHhcCCCCCcCCCCCcccccCCCHHHHHHHHHHHHhCCCccEEEEE
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeccCCCCCCCCCcchhhHHHHHHHhhhhhcCCCcchhHHHHHHHhhccCCchHHHHHHHhccCcCCcchhHHHHHh
Q 018415 162 NGSLIFGSLGGGMCGNSVAVGEAFEDALKCTIKADNGLRTDSFIQLVAETVHQAGILDRLLEVQKLDNFDIEGAIHAYYN 241 (356)
Q Consensus 162 ~G~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~f~~~l~~~L~~~~vL~~L~~lQ~LD~ldIeg~~~~~~~ 241 (356)
||++||++.++|..++...+.++|++.|..++.+.+|.+.+.|+++|+++|.+++||++|+++|+||.+||||++++|++
T Consensus 250 ~G~~i~~~~~~g~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~f~~lv~~~L~~s~vL~~Ll~~Q~lD~lDIEg~~~ly~~ 329 (456)
T 4axd_A 250 NGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIHCYYD 329 (456)
T ss_dssp TTEEEECCSCTTCCCCCHHHHHHHHHHTBTTBCSCTTTHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred CCEEeecCCCCCccchhHHHHHHHHHHHHHhccCcccchhHHHHHHHHHhcccchHHHHHHHHhcccccchhHHHHHHHH
Confidence 99999999877776666566789999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccchhccchhhhhhhcccccCCCCchhhHHHHHHHHHHhhhCceeEEEEeecCCCCCCC-CCCceeeccCCceeEE
Q 018415 242 IISQPCRVCRELDEEKASHLCTSLHSIPMNESLKIVKDYLIAATAKDCSLMICFRPKSNEFSG-SYNSIYLESTNQVFDY 320 (356)
Q Consensus 242 l~~~p~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~l~~ylla~TaKDCSimIs~~~~~~~~~~-~~~~~~~~~~~~~~~~ 320 (356)
++++||.+|.++... +.++.+|++|.+|++++|++|+||||||||||||+|+|...+.++ +.+++++++++++|+|
T Consensus 330 ~v~q~~~~~~~l~~~---~~~~~l~s~~~~e~~~~v~~yliaaTaKDCSiMIsl~p~~~~~~~~~~~~~~~~~~~~~f~~ 406 (456)
T 4axd_A 330 IINQPCPICREGRPL---EAELSLHALPLDESLKIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQTFDY 406 (456)
T ss_dssp HTTCCCTTTTTSSCC---HHHHHHHHSCHHHHHHHHHHHHHHHHHHHCEEEEEEEECCTTSCCC-CCEEEEGGGTEEEEE
T ss_pred HhcCcchHHHHHHhH---HHHHHhhcCCHHHHHHHHHHHHHHHhhhcceEEEEeccccCCCCcCcccceeccCCCCceee
Confidence 999999999887433 457789999999999999999999999999999999998777553 4457999999999999
Q ss_pred EEEEEeCCCCCCCChHHHHHHHHHHHHHHHHHhhcC
Q 018415 321 KAYFVDLDLKPFKKMEEHYAKDKKISSCYIQMLKSR 356 (356)
Q Consensus 321 ~v~vvDLD~Kp~~Kl~~w~~~D~~I~~~y~~~~~~~ 356 (356)
+|+|||||+||++||+||+++|++|+++|.++++++
T Consensus 407 ~v~viDLD~Kp~~~i~~~~~lD~~Iv~~y~~~~~~~ 442 (456)
T 4axd_A 407 KVHFIDLSLKPLKRMESYYKLDKKIISFYNRKQKAE 442 (456)
T ss_dssp EEEEECCCCCCTTHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEEEeCCCCchhhhHHHHhhhHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999863
No 2
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=48.77 E-value=27 Score=27.90 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=35.7
Q ss_pred CCchHHH--HHHhhhcccccccCCCCCccCCCCCChHHHHHHHHHHHhCCccccceeecCcee
Q 018415 106 SVTRFQL--HQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 166 (356)
Q Consensus 106 ~~cR~c~--~q~~K~~~~~~~~~s~YCPlDLfSg~~~ri~~Al~~L~~~pqNNlrvf~~G~~i 166 (356)
.+|.||. -+.++.. .+ ..|--.|+..+ ..++.++..+-..|. -..||+||+.|
T Consensus 33 P~C~fc~~ak~lL~~~--gv---~~~~~~~v~~~--~~~r~~l~~~sg~~T-vPqIFI~g~~I 87 (118)
T 2wul_A 33 PQCGFSNAVVQILRLH--GV---RDYAAYNVLDD--PELRQGIKDYSNWPT-IPQVYLNGEFV 87 (118)
T ss_dssp BSSHHHHHHHHHHHHT--TC---CSCEEEETTSC--HHHHHHHHHHHTCCS-SCEEEETTEEE
T ss_pred CCCHHHHHHHHHHHHh--CC---cCeEeecccCC--HHHHHHHHHhccCCC-CCeEeECCEEE
Confidence 4799994 4566543 11 24666777554 468889988866532 35599999998
No 3
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=22.47 E-value=1.4e+02 Score=23.60 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=32.4
Q ss_pred cCCchHHH--HHHhhhcccccccCCCCCccCCCC-CChHHHHHHHHHHHhCCccccceeecCcee
Q 018415 105 RSVTRFQL--HQALKLSEQEISERSEYDPLDLFS-GSKERICKAIKALYTNPQNNLRVFLNGSLI 166 (356)
Q Consensus 105 ~~~cR~c~--~q~~K~~~~~~~~~s~YCPlDLfS-g~~~ri~~Al~~L~~~pqNNlrvf~~G~~i 166 (356)
...|.||. -+.++.. +.+. -.|--.|+-. .+...++.++..+-..+ .=..||+||+.|
T Consensus 21 k~~Cp~C~~ak~lL~~~-~~~~--v~~~~idid~~~d~~~~~~~l~~~~G~~-tVP~IfI~G~~I 81 (127)
T 3l4n_A 21 KSTCSYSKGMKELLENE-YQFI--PNYYIIELDKHGHGEELQEYIKLVTGRG-TVPNLLVNGVSR 81 (127)
T ss_dssp CTTCHHHHHHHHHHHHH-EEEE--SCCEEEEGGGSTTHHHHHHHHHHHHSCC-SSCEEEETTEEC
T ss_pred cCCCccHHHHHHHHHHh-cccC--CCcEEEEecCCCCHHHHHHHHHHHcCCC-CcceEEECCEEE
Confidence 35699994 4444432 1110 1355555543 24466777887764431 124589999987
No 4
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=20.64 E-value=1.1e+02 Score=23.43 Aligned_cols=53 Identities=25% Similarity=0.483 Sum_probs=33.0
Q ss_pred cCCchHHH--HHHhhhcccccccCCCCCccCCCCCChHHHHHHHHHHHhCCccccceeecCcee
Q 018415 105 RSVTRFQL--HQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 166 (356)
Q Consensus 105 ~~~cR~c~--~q~~K~~~~~~~~~s~YCPlDLfSg~~~ri~~Al~~L~~~pqNNlrvf~~G~~i 166 (356)
...|.||. .+.++.. .+ .|--.|+... ..++.++..+-..+ .=..||+||+.|
T Consensus 28 ~~~Cp~C~~ak~~L~~~--gi----~y~~~di~~d--~~~~~~l~~~~g~~-tvP~ifi~g~~i 82 (111)
T 3zyw_A 28 EPRCGFSKQMVEILHKH--NI----QFSSFDIFSD--EEVRQGLKAYSSWP-TYPQLYVSGELI 82 (111)
T ss_dssp SBSSHHHHHHHHHHHHT--TC----CCEEEEGGGC--HHHHHHHHHHHTCC-SSCEEEETTEEE
T ss_pred CCcchhHHHHHHHHHHc--CC----CeEEEECcCC--HHHHHHHHHHHCCC-CCCEEEECCEEE
Confidence 35799994 4555543 33 4766777543 45677777764432 123589999987
No 5
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=17.81 E-value=1.4e+02 Score=21.60 Aligned_cols=37 Identities=14% Similarity=0.315 Sum_probs=24.0
Q ss_pred CCCccCCCCCChHHHHHHHHHHHhCCccc-cceeecCcee
Q 018415 128 EYDPLDLFSGSKERICKAIKALYTNPQNN-LRVFLNGSLI 166 (356)
Q Consensus 128 ~YCPlDLfSg~~~ri~~Al~~L~~~pqNN-lrvf~~G~~i 166 (356)
.|--.|+-.. ...+.++..+...|+.. ..||+||..|
T Consensus 34 ~~~~~di~~~--~~~~~~l~~~~g~~~~~vP~ifi~g~~i 71 (93)
T 1t1v_A 34 QYQLVDISQD--NALRDEMRTLAGNPKATPPQIVNGNHYC 71 (93)
T ss_dssp CCEEEETTSC--HHHHHHHHHHTTCTTCCSCEEEETTEEE
T ss_pred ceEEEECCCC--HHHHHHHHHHhCCCCCCCCEEEECCEEE
Confidence 5878888543 34566777776543222 4689999877
No 6
>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A
Probab=14.18 E-value=30 Score=32.62 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=18.5
Q ss_pred CcccccCCCCCcccc-----cccccCCchHHHHHHhhhc
Q 018415 86 PKCGFLPISRFIAEE-----NAIKRSVTRFQLHQALKLS 119 (356)
Q Consensus 86 PKwgfl~~~~~~~~~-----~~~k~~~cR~c~~q~~K~~ 119 (356)
=|| |+|.+ .+|++ ..-+-..||-|..|.+|+.
T Consensus 157 eKW-WLP~p-~VP~~GLSe~~RK~L~~qrd~~~QIlKAA 193 (365)
T 2ntx_A 157 DKW-WLPPV-KVPPGGLSEPSRRMLYFQKDSVTQVQKAA 193 (365)
T ss_dssp -----CCCE-ECCTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-cCCCC-CCCCCCCCHHHHHHHHHhHHHHHHHHHHH
Confidence 488 89864 34432 2223457999999999974
No 7
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=14.00 E-value=1.9e+02 Score=21.78 Aligned_cols=51 Identities=16% Similarity=0.367 Sum_probs=30.8
Q ss_pred CchHHH--HHHhhhcccccccCCCCCccCCCCCChHHHHHHHHHHHhCCccccceeecCcee
Q 018415 107 VTRFQL--HQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 166 (356)
Q Consensus 107 ~cR~c~--~q~~K~~~~~~~~~s~YCPlDLfSg~~~ri~~Al~~L~~~pqNNlrvf~~G~~i 166 (356)
.|.||. .+.++.. .+ .|--.|+..+ ..++.++..+...+ .-..||+||+.|
T Consensus 32 ~Cp~C~~ak~~L~~~--gi----~~~~~dI~~~--~~~~~~l~~~~g~~-tvP~ifi~g~~i 84 (109)
T 3ipz_A 32 MCGFSNTVVQILKNL--NV----PFEDVNILEN--EMLRQGLKEYSNWP-TFPQLYIGGEFF 84 (109)
T ss_dssp SSHHHHHHHHHHHHT--TC----CCEEEEGGGC--HHHHHHHHHHHTCS-SSCEEEETTEEE
T ss_pred CChhHHHHHHHHHHc--CC----CcEEEECCCC--HHHHHHHHHHHCCC-CCCeEEECCEEE
Confidence 699994 4444433 33 4666666533 45667777765431 123589999987
No 8
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus}
Probab=13.92 E-value=1.5e+02 Score=26.74 Aligned_cols=33 Identities=21% Similarity=0.536 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHHhCCccccceee---cCceecc
Q 018415 136 SGSKERICKAIKALYTNPQNNLRVFL---NGSLIFG 168 (356)
Q Consensus 136 Sg~~~ri~~Al~~L~~~pqNNlrvf~---~G~~i~~ 168 (356)
-|-++=++.+|..|+++|-|-++||+ ||.+|+-
T Consensus 84 rgRPDIvHq~LL~llDSpLNkL~VYIHT~~~~lI~V 119 (244)
T 3o7b_A 84 RGRPDIVHQCLLLLLDSPLRDFEVYVHTLNGEIIWV 119 (244)
T ss_dssp CSCHHHHHHHHHHHHTCSCCSEEEEEEETTSCEEEE
T ss_pred ccCccHHHHHHHHHhhChhhheEEEEEecCCEEEEE
Confidence 45668889999999999999999986 6777653
No 9
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=12.54 E-value=2.5e+02 Score=21.74 Aligned_cols=52 Identities=23% Similarity=0.433 Sum_probs=31.2
Q ss_pred CchHHH--HHHhhhcccccccCCCCCccCCCCCChHHHHHHHHHHHhCCccccceeecCcee
Q 018415 107 VTRFQL--HQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 166 (356)
Q Consensus 107 ~cR~c~--~q~~K~~~~~~~~~s~YCPlDLfSg~~~ri~~Al~~L~~~pqNNlrvf~~G~~i 166 (356)
.|.||. .+.++.. .+. .|--.|+-.+ ..++.++..+-..+. -..||+||+.|
T Consensus 34 ~Cp~C~~ak~lL~~~--gv~---~~~~vdV~~d--~~~~~~l~~~tg~~t-vP~vfI~g~~I 87 (118)
T 2wem_A 34 QCGFSNAVVQILRLH--GVR---DYAAYNVLDD--PELRQGIKDYSNWPT-IPQVYLNGEFV 87 (118)
T ss_dssp SSHHHHHHHHHHHHT--TCC---CCEEEESSSC--HHHHHHHHHHHTCCS-SCEEEETTEEE
T ss_pred ccHHHHHHHHHHHHc--CCC---CCEEEEcCCC--HHHHHHHHHHhCCCC-cCeEEECCEEE
Confidence 699994 4444433 231 3666777532 456677777644321 23489999987
No 10
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=12.39 E-value=1.9e+02 Score=22.42 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=31.4
Q ss_pred CchHHH--HHHhhhcccccccCCCCCccCCCCCChHHHHHHHHHHHhCCccccceeecCcee
Q 018415 107 VTRFQL--HQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 166 (356)
Q Consensus 107 ~cR~c~--~q~~K~~~~~~~~~s~YCPlDLfSg~~~ri~~Al~~L~~~pqNNlrvf~~G~~i 166 (356)
.|.||. .+.++.. .+. ...|--.|+..+ ..++.++..+...+. -..||+||+.|
T Consensus 30 ~Cp~C~~ak~lL~~~--gv~-~~~~~~~dv~~~--~~~~~~l~~~sg~~t-vP~vfI~g~~i 85 (121)
T 3gx8_A 30 KCGFSRATIGLLGNQ--GVD-PAKFAAYNVLED--PELREGIKEFSEWPT-IPQLYVNKEFI 85 (121)
T ss_dssp CTTHHHHHHHHHHHH--TBC-GGGEEEEECTTC--HHHHHHHHHHHTCCS-SCEEEETTEEE
T ss_pred CCccHHHHHHHHHHc--CCC-cceEEEEEecCC--HHHHHHHHHHhCCCC-CCeEEECCEEE
Confidence 699994 4445443 221 012555666433 566778877654321 23599999987
Done!