Query 018415
Match_columns 356
No_of_seqs 149 out of 209
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 14:54:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018415.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018415hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ktea_ c.47.1.1 (A:) Glutared 23.2 39 0.0028 24.0 4.1 59 105-166 19-79 (105)
2 d1wika_ c.47.1.1 (A:) Thioredo 19.5 39 0.0028 24.4 3.3 52 106-166 28-81 (109)
3 d2baya1 g.44.1.2 (A:1-56) Pre- 13.7 36 0.0026 21.4 1.5 15 105-119 21-35 (56)
4 d1fova_ c.47.1.1 (A:) Glutared 12.4 90 0.0066 20.5 3.6 53 105-166 8-62 (82)
5 d1ikpa1 b.29.1.7 (A:2-251) Exo 11.9 1.1E+02 0.0082 24.4 4.4 54 279-340 138-191 (250)
6 d1jm7a_ g.44.1.1 (A:) brca1 RI 10.6 61 0.0044 22.7 2.2 26 103-133 39-64 (103)
7 d2ghfa2 g.37.1.1 (A:9-44) Zinc 10.6 25 0.0018 20.3 -0.1 13 119-133 7-19 (36)
8 d1rmda2 g.44.1.1 (A:1-86) V(D) 9.3 60 0.0044 22.4 1.6 17 103-119 41-57 (86)
9 d2pu9a1 g.36.1.1 (A:8-115) Fer 8.8 62 0.0045 23.6 1.5 17 128-144 46-62 (108)
10 d1wjpa2 g.37.1.1 (A:43-66) Zin 8.1 62 0.0045 17.1 0.9 14 127-140 3-16 (26)
No 1
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=23.24 E-value=39 Score=23.97 Aligned_cols=59 Identities=15% Similarity=0.137 Sum_probs=33.4
Q ss_pred cCCchHH--HHHHhhhcccccccCCCCCccCCCCCChHHHHHHHHHHHhCCccccceeecCcee
Q 018415 105 RSVTRFQ--LHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 166 (356)
Q Consensus 105 ~~~cR~c--~~q~~K~~~~~~~~~s~YCPlDLfSg~~~ri~~Al~~L~~~pqNNlrvf~~G~~i 166 (356)
...|.|| +-+.++...-+. ..-.|.-+|.. .|...++.++..+-..+ .-..||+||+.|
T Consensus 19 k~~Cp~C~~ak~ll~~~~~~~-~~~~~~e~d~~-~d~~~~~~~l~~~~g~~-tvPqIfi~g~~I 79 (105)
T d1ktea_ 19 KPTCPFCRKTQELLSQLPFKE-GLLEFVDITAT-SDTNEIQDYLQQLTGAR-TVPRVFIGKECI 79 (105)
T ss_dssp CSSCHHHHHHHHHHHHSCBCT-TSEEEEEGGGS-TTHHHHHHHHHHHHSCC-CSCEEEETTEEE
T ss_pred CCCCchHHHHHHHHHHhCCcc-ceeeeeecccc-cccHHHHHHHhhccCCC-cCcEEEECCEEE
Confidence 4569999 455555432110 01123344443 45566777777775442 235699999988
No 2
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.54 E-value=39 Score=24.36 Aligned_cols=52 Identities=19% Similarity=0.507 Sum_probs=33.0
Q ss_pred CCchHH--HHHHhhhcccccccCCCCCccCCCCCChHHHHHHHHHHHhCCccccceeecCcee
Q 018415 106 SVTRFQ--LHQALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 166 (356)
Q Consensus 106 ~~cR~c--~~q~~K~~~~~~~~~s~YCPlDLfSg~~~ri~~Al~~L~~~pqNNlrvf~~G~~i 166 (356)
.+|.|| +-+.++.. .+ .|--.|+- +...++.++...-..+. -..||++|+.|
T Consensus 28 p~Cp~c~~ak~lL~~~--~i----~~~~~~v~--~~~~~~~~l~~~t~~~T-vPqIFi~g~~I 81 (109)
T d1wika_ 28 AKCGFSKQILEILNST--GV----EYETFDIL--EDEEVRQGLKTFSNWPT-YPQLYVRGDLV 81 (109)
T ss_dssp CCSSTHHHHHHHHHHT--CS----CEEEEESS--SCHHHHHHHHHHHSCCS-SCEEECSSSEE
T ss_pred CCChHHHHHHHHHHhc--CC----CceEEEec--ccHHHHHHHHHhcCCCC-CCeEEECCEEE
Confidence 459998 45566543 23 45555663 33557777777655432 35699999988
No 3
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.67 E-value=36 Score=21.37 Aligned_cols=15 Identities=20% Similarity=0.085 Sum_probs=12.9
Q ss_pred cCCchHHHHHHhhhc
Q 018415 105 RSVTRFQLHQALKLS 119 (356)
Q Consensus 105 ~~~cR~c~~q~~K~~ 119 (356)
..+||-|+.++++..
T Consensus 21 h~fc~~cI~~~l~~~ 35 (56)
T d2baya1 21 TIFEKSLLEQYVKDT 35 (56)
T ss_dssp EEEEHHHHHHHHHHH
T ss_pred CcccHHHHHHHHhhc
Confidence 467999999999964
No 4
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}
Probab=12.37 E-value=90 Score=20.51 Aligned_cols=53 Identities=8% Similarity=0.142 Sum_probs=30.0
Q ss_pred cCCchHHHHH--HhhhcccccccCCCCCccCCCCCChHHHHHHHHHHHhCCccccceeecCcee
Q 018415 105 RSVTRFQLHQ--ALKLSEQEISERSEYDPLDLFSGSKERICKAIKALYTNPQNNLRVFLNGSLI 166 (356)
Q Consensus 105 ~~~cR~c~~q--~~K~~~~~~~~~s~YCPlDLfSg~~~ri~~Al~~L~~~pqNNlrvf~~G~~i 166 (356)
...|.||..- .++.. ++ .|--.|+-+... .+..+...-..+ .-..||+||+.|
T Consensus 8 ~~~Cp~C~~ak~~L~~~--~i----~y~~~di~~~~~--~~~~~~~~~g~~-tvP~i~i~~~~I 62 (82)
T d1fova_ 8 KETCPYCHRAKALLSSK--GV----SFQELPIDGNAA--KREEMIKRSGRT-TVPQIFIDAQHI 62 (82)
T ss_dssp CSSCHHHHHHHHHHHHH--TC----CCEEEECTTCSH--HHHHHHHHHSSC-CSCEEEETTEEE
T ss_pred CCCCHhHHHHHHHHHHc--CC----CeEEEeccchHH--HHHHHHHHhCCC-CCCeEEECCEEE
Confidence 3469999543 45443 34 577777755433 334454443221 123589999987
No 5
>d1ikpa1 b.29.1.7 (A:2-251) Exotoxin A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.91 E-value=1.1e+02 Score=24.38 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=27.8
Q ss_pred HHHHHhhhCceeEEEEeecCCCCCCCCCCceeeccCCceeEEEEEEEeCCCCCCCChHHHHH
Q 018415 279 DYLIAATAKDCSLMICFRPKSNEFSGSYNSIYLESTNQVFDYKAYFVDLDLKPFKKMEEHYA 340 (356)
Q Consensus 279 ~ylla~TaKDCSimIs~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvDLD~Kp~~Kl~~w~~ 340 (356)
+-+++.|++|.|.+|+-...+..- |. +.+.. --+++..---.+...+++.||..
T Consensus 138 ~~~L~K~~~~~tF~V~~~E~Nemq--pt--lAIS~----~~VS~~~AQ~~~~R~KRWs~W~s 191 (250)
T d1ikpa1 138 DELLAKLARDATFFVRAHESNEMQ--PT--LAISH----AGVSVVMAQAQPRREKRWSEWAS 191 (250)
T ss_dssp HHHHHHHTTEEEEEEEECSCCCSS--CE--EEEEE----EEEEEEECC------CCCHHHHS
T ss_pred hHHHHHhcCCceEEEEcccccccC--ce--eEeec----Ccceeehhhhccchhhhhhhhhc
Confidence 345779999999999876432211 11 11110 11344555556666889999973
No 6
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.63 E-value=61 Score=22.70 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=18.5
Q ss_pred cccCCchHHHHHHhhhcccccccCCCCCccC
Q 018415 103 IKRSVTRFQLHQALKLSEQEISERSEYDPLD 133 (356)
Q Consensus 103 ~k~~~cR~c~~q~~K~~~~~~~~~s~YCPlD 133 (356)
....+|+-|+.++++..++. .-||.-
T Consensus 39 CgH~fC~~Ci~~~~~~~~~~-----~~CP~C 64 (103)
T d1jm7a_ 39 CDHIFCKFCMLKLLNQKKGP-----SQCPLC 64 (103)
T ss_dssp TSCCCCSHHHHHHHHSSSSS-----CCCTTT
T ss_pred CCCchhhHHHHHHHHHCCCC-----CcCcCC
Confidence 44678999999998865432 358865
No 7
>d2ghfa2 g.37.1.1 (A:9-44) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.59 E-value=25 Score=20.31 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=8.0
Q ss_pred cccccccCCCCCccC
Q 018415 119 SEQEISERSEYDPLD 133 (356)
Q Consensus 119 ~~~~~~~~s~YCPlD 133 (356)
.+|.. ..+|||..
T Consensus 7 ~qGGy--ECKYC~f~ 19 (36)
T d2ghfa2 7 VEGGY--ECKYCTFQ 19 (36)
T ss_dssp CCSSE--ECSSCSCE
T ss_pred ccCCe--eeeecCcc
Confidence 34444 56899954
No 8
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.25 E-value=60 Score=22.43 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=13.9
Q ss_pred cccCCchHHHHHHhhhc
Q 018415 103 IKRSVTRFQLHQALKLS 119 (356)
Q Consensus 103 ~k~~~cR~c~~q~~K~~ 119 (356)
....+||-|+.++++.+
T Consensus 41 CgH~FC~~Ci~~~~~~~ 57 (86)
T d1rmda2 41 CKHLFCRICILRCLKVM 57 (86)
T ss_dssp TSCEEEHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHhhC
Confidence 45678999999999864
No 9
>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}
Probab=8.78 E-value=62 Score=23.65 Aligned_cols=17 Identities=6% Similarity=0.167 Sum_probs=14.3
Q ss_pred CCCccCCCCCChHHHHH
Q 018415 128 EYDPLDLFSGSKERICK 144 (356)
Q Consensus 128 ~YCPlDLfSg~~~ri~~ 144 (356)
.|||.-+++|+.+.+..
T Consensus 46 ~~CPCr~~~gk~ee~k~ 62 (108)
T d2pu9a1 46 PLCPCRHYEDKEAEVKN 62 (108)
T ss_dssp CBCTTBCCSCHHHHHHH
T ss_pred CCCCcccCCCcHHHhhc
Confidence 69999999998876554
No 10
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.08 E-value=62 Score=17.09 Aligned_cols=14 Identities=29% Similarity=0.410 Sum_probs=10.7
Q ss_pred CCCCccCCCCCChH
Q 018415 127 SEYDPLDLFSGSKE 140 (356)
Q Consensus 127 s~YCPlDLfSg~~~ 140 (356)
..||-|.+||.+..
T Consensus 3 cpycslrf~sp~lk 16 (26)
T d1wjpa2 3 CPYCSLRFFSPELK 16 (26)
T ss_dssp CTTTCCCBSSHHHH
T ss_pred CCcceeeeCCHHHh
Confidence 36999999987543
Done!