Query 018416
Match_columns 356
No_of_seqs 434 out of 3438
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:50:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13512 coenzyme A disulfide 100.0 1E-41 2.2E-46 337.3 29.4 294 11-315 120-435 (438)
2 PRK09564 coenzyme A disulfide 100.0 1.3E-41 2.7E-46 337.3 29.5 304 4-314 114-440 (444)
3 TIGR03385 CoA_CoA_reduc CoA-di 100.0 2.8E-41 6E-46 333.3 30.7 299 4-311 102-424 (427)
4 PRK09754 phenylpropionate diox 100.0 9.1E-40 2E-44 319.5 35.7 281 4-295 111-393 (396)
5 COG1249 Lpd Pyruvate/2-oxoglut 100.0 1.2E-40 2.7E-45 326.3 26.0 276 4-306 146-449 (454)
6 KOG1336 Monodehydroascorbate/f 100.0 3.1E-40 6.8E-45 314.6 24.0 293 4-300 180-473 (478)
7 PRK14989 nitrite reductase sub 100.0 2E-37 4.3E-42 325.6 36.2 310 4-323 112-433 (847)
8 PRK07846 mycothione reductase; 100.0 1.4E-37 3E-42 308.6 27.1 276 4-306 139-441 (451)
9 TIGR02374 nitri_red_nirB nitri 100.0 1.5E-36 3.2E-41 318.8 36.1 309 4-325 107-422 (785)
10 PRK05249 soluble pyridine nucl 100.0 1.8E-37 3.9E-42 309.0 27.6 276 4-306 148-448 (461)
11 PRK07845 flavoprotein disulfid 100.0 4.7E-37 1E-41 306.2 26.9 276 4-306 150-451 (466)
12 PRK06370 mercuric reductase; V 100.0 4.6E-37 1E-41 306.2 26.5 278 4-306 144-448 (463)
13 TIGR01423 trypano_reduc trypan 100.0 9.4E-37 2E-41 304.4 27.7 275 4-306 162-466 (486)
14 TIGR01421 gluta_reduc_1 glutat 100.0 1.2E-36 2.6E-41 301.9 28.0 275 4-306 140-445 (450)
15 TIGR03452 mycothione_red mycot 100.0 9.5E-37 2.1E-41 302.8 26.9 276 4-306 142-444 (452)
16 PRK06467 dihydrolipoamide dehy 100.0 9.8E-37 2.1E-41 304.2 26.6 274 4-306 147-450 (471)
17 PTZ00058 glutathione reductase 100.0 1.2E-36 2.6E-41 307.2 27.3 284 4-306 213-552 (561)
18 TIGR02053 MerA mercuric reduct 100.0 1.3E-36 2.8E-41 303.1 27.0 267 4-293 139-434 (463)
19 PLN02507 glutathione reductase 100.0 2.4E-36 5.3E-41 302.9 28.9 274 4-306 178-478 (499)
20 COG1251 NirB NAD(P)H-nitrite r 100.0 6.5E-37 1.4E-41 303.9 23.5 310 4-325 112-425 (793)
21 TIGR01424 gluta_reduc_2 glutat 100.0 2.5E-36 5.3E-41 299.6 27.4 274 4-306 141-441 (446)
22 PRK08010 pyridine nucleotide-d 100.0 2.7E-36 5.8E-41 299.0 27.4 275 4-306 130-432 (441)
23 PRK06416 dihydrolipoamide dehy 100.0 3.6E-36 7.7E-41 299.8 26.7 272 10-306 149-447 (462)
24 PRK14694 putative mercuric red 100.0 4.5E-36 9.8E-41 299.4 27.1 274 4-306 151-448 (468)
25 PRK06912 acoL dihydrolipoamide 100.0 3.7E-36 8E-41 299.3 26.2 275 4-306 143-443 (458)
26 PRK06116 glutathione reductase 100.0 4.7E-36 1E-40 298.0 26.0 275 4-306 142-445 (450)
27 PTZ00153 lipoamide dehydrogena 100.0 8E-36 1.7E-40 305.1 28.1 278 4-306 285-645 (659)
28 PRK06115 dihydrolipoamide dehy 100.0 9.3E-36 2E-40 296.9 27.6 275 9-306 150-451 (466)
29 PRK14727 putative mercuric red 100.0 4.9E-36 1.1E-40 299.8 25.4 274 4-306 161-459 (479)
30 PRK07818 dihydrolipoamide dehy 100.0 1E-35 2.2E-40 296.8 26.6 250 38-306 171-451 (466)
31 PLN02546 glutathione reductase 100.0 1.1E-35 2.5E-40 300.2 25.7 274 4-306 227-527 (558)
32 TIGR01438 TGR thioredoxin and 100.0 2.7E-35 5.9E-40 294.3 27.1 275 4-306 154-463 (484)
33 PRK06327 dihydrolipoamide dehy 100.0 3.5E-35 7.5E-40 293.5 25.9 250 38-306 182-460 (475)
34 PRK13748 putative mercuric red 100.0 5.3E-35 1.1E-39 298.1 26.7 274 4-306 243-541 (561)
35 PRK07251 pyridine nucleotide-d 100.0 1.7E-34 3.7E-39 285.8 28.0 275 4-306 129-431 (438)
36 TIGR01350 lipoamide_DH dihydro 100.0 1E-34 2.2E-39 289.3 26.4 276 4-306 142-446 (461)
37 PRK06292 dihydrolipoamide dehy 100.0 1.2E-34 2.7E-39 288.5 26.2 250 38-306 168-445 (460)
38 PRK05976 dihydrolipoamide dehy 100.0 1.7E-34 3.6E-39 288.4 27.1 252 38-306 179-457 (472)
39 PRK04965 NADH:flavorubredoxin 100.0 2.5E-33 5.4E-38 272.4 31.5 252 4-270 110-365 (377)
40 PTZ00052 thioredoxin reductase 100.0 7.7E-34 1.7E-38 285.0 28.4 274 4-306 155-473 (499)
41 KOG1335 Dihydrolipoamide dehyd 100.0 1E-32 2.2E-37 255.2 17.2 274 6-301 184-489 (506)
42 KOG0405 Pyridine nucleotide-di 100.0 4.2E-32 9.1E-37 248.4 15.8 254 38-309 188-470 (478)
43 COG1252 Ndh NADH dehydrogenase 100.0 6.3E-29 1.4E-33 238.6 17.5 195 4-210 110-332 (405)
44 KOG4716 Thioredoxin reductase 100.0 1.8E-28 4E-33 223.8 13.5 280 3-305 171-486 (503)
45 PTZ00318 NADH dehydrogenase-li 100.0 2.6E-27 5.6E-32 233.6 21.3 192 4-209 124-347 (424)
46 COG0446 HcaD Uncharacterized N 99.9 8.9E-25 1.9E-29 213.3 29.3 281 12-301 111-415 (415)
47 TIGR03169 Nterm_to_SelD pyridi 99.9 1.6E-24 3.6E-29 209.4 21.6 192 4-209 106-310 (364)
48 TIGR01316 gltA glutamate synth 99.9 1.3E-24 2.7E-29 215.8 18.6 188 4-206 230-446 (449)
49 PRK10262 thioredoxin reductase 99.9 7.8E-24 1.7E-28 201.4 16.0 183 4-207 116-312 (321)
50 KOG1346 Programmed cell death 99.9 7E-24 1.5E-28 198.4 13.9 270 15-293 325-652 (659)
51 PRK12831 putative oxidoreducta 99.9 4.2E-23 9.1E-28 205.5 19.8 188 4-207 240-458 (464)
52 TIGR03140 AhpF alkyl hydropero 99.9 1.6E-22 3.4E-27 204.1 15.4 179 4-207 322-510 (515)
53 TIGR01292 TRX_reduct thioredox 99.9 8.9E-22 1.9E-26 184.4 18.9 177 4-206 111-297 (300)
54 PRK12770 putative glutamate sy 99.9 1.2E-21 2.5E-26 188.8 18.8 185 4-207 130-347 (352)
55 KOG2495 NADH-dehydrogenase (ub 99.9 2.3E-22 5.1E-27 189.4 12.0 190 4-206 169-393 (491)
56 PRK12778 putative bifunctional 99.9 1.6E-21 3.4E-26 205.0 19.6 188 4-207 529-747 (752)
57 PRK11749 dihydropyrimidine deh 99.9 3.5E-21 7.6E-26 191.8 20.7 187 4-207 237-449 (457)
58 PRK09853 putative selenate red 99.9 6.7E-21 1.4E-25 200.6 19.5 200 4-225 635-856 (1019)
59 TIGR03143 AhpF_homolog putativ 99.9 7.8E-21 1.7E-25 193.3 18.5 178 4-206 113-305 (555)
60 PRK15317 alkyl hydroperoxide r 99.9 6.5E-21 1.4E-25 192.5 16.8 179 4-207 321-509 (517)
61 PRK12810 gltD glutamate syntha 99.9 1.1E-20 2.4E-25 188.8 18.2 193 4-207 240-462 (471)
62 PRK13984 putative oxidoreducta 99.8 6.6E-20 1.4E-24 188.6 20.6 183 4-206 380-598 (604)
63 PRK12779 putative bifunctional 99.8 5.5E-20 1.2E-24 195.8 19.9 189 3-207 403-624 (944)
64 TIGR01318 gltD_gamma_fam gluta 99.8 1.1E-19 2.4E-24 181.3 20.8 187 5-207 239-463 (467)
65 PRK12814 putative NADPH-depend 99.8 5.7E-20 1.2E-24 190.1 17.9 185 4-207 290-498 (652)
66 PRK12775 putative trifunctiona 99.8 7.9E-20 1.7E-24 196.1 18.6 188 3-206 528-751 (1006)
67 PRK12769 putative oxidoreducta 99.8 1.6E-19 3.5E-24 187.1 19.3 188 4-207 424-649 (654)
68 TIGR01317 GOGAT_sm_gam glutama 99.8 2.5E-19 5.5E-24 179.4 18.8 194 4-207 240-476 (485)
69 COG0492 TrxB Thioredoxin reduc 99.8 2.3E-19 5.1E-24 168.4 16.0 175 4-206 114-297 (305)
70 TIGR03315 Se_ygfK putative sel 99.8 1.9E-18 4.1E-23 183.0 20.8 184 4-209 633-839 (1012)
71 PRK12809 putative oxidoreducta 99.8 1.3E-18 2.9E-23 179.7 18.1 188 4-207 407-632 (639)
72 PRK12771 putative glutamate sy 99.7 1.3E-16 2.9E-21 162.9 19.6 186 4-207 234-441 (564)
73 TIGR01372 soxA sarcosine oxida 99.7 1.1E-16 2.4E-21 172.5 19.8 173 4-206 285-468 (985)
74 PLN02852 ferredoxin-NADP+ redu 99.7 1.3E-16 2.8E-21 158.7 17.4 193 5-208 127-420 (491)
75 COG3634 AhpF Alkyl hydroperoxi 99.7 6.8E-17 1.5E-21 148.9 8.3 159 6-180 326-494 (520)
76 PF00070 Pyr_redox: Pyridine n 99.7 1.7E-15 3.6E-20 114.4 11.4 80 41-123 1-80 (80)
77 PF07992 Pyr_redox_2: Pyridine 99.6 5.4E-15 1.2E-19 130.5 9.0 137 41-178 1-200 (201)
78 KOG0404 Thioredoxin reductase 99.5 1.3E-14 2.8E-19 126.6 8.5 133 38-177 156-295 (322)
79 COG0493 GltD NADPH-dependent g 99.4 8E-13 1.7E-17 130.4 10.7 193 2-206 218-447 (457)
80 KOG2755 Oxidoreductase [Genera 99.4 1.5E-12 3.3E-17 116.2 9.8 165 9-178 107-323 (334)
81 PRK05329 anaerobic glycerol-3- 99.4 1.4E-11 3.1E-16 120.8 15.1 160 41-208 217-419 (422)
82 PLN02172 flavin-containing mon 99.2 1.8E-10 3.9E-15 114.7 12.6 167 4-209 174-352 (461)
83 TIGR01292 TRX_reduct thioredox 99.1 1.1E-09 2.4E-14 102.4 13.6 99 41-142 2-115 (300)
84 PRK06567 putative bifunctional 99.1 2.8E-09 6E-14 112.4 17.1 169 3-206 508-766 (1028)
85 KOG0399 Glutamate synthase [Am 99.1 2.6E-10 5.5E-15 118.2 7.2 190 3-205 1881-2115(2142)
86 PRK04176 ribulose-1,5-biphosph 98.9 5.3E-08 1.1E-12 89.8 17.0 165 39-207 25-252 (257)
87 COG2081 Predicted flavoprotein 98.9 1.6E-08 3.5E-13 96.2 13.2 100 40-141 4-171 (408)
88 TIGR00292 thiazole biosynthesi 98.9 1.6E-07 3.6E-12 86.3 18.5 166 39-207 21-251 (254)
89 PRK15317 alkyl hydroperoxide r 98.8 1E-07 2.2E-12 96.6 16.0 101 39-141 211-324 (517)
90 TIGR03140 AhpF alkyl hydropero 98.8 5.6E-08 1.2E-12 98.5 14.0 102 38-141 211-325 (515)
91 PRK09754 phenylpropionate diox 98.8 3.8E-08 8.2E-13 96.4 11.7 100 38-141 2-114 (396)
92 PRK09564 coenzyme A disulfide 98.8 4.6E-08 1E-12 97.2 11.7 101 40-142 1-118 (444)
93 PRK06847 hypothetical protein; 98.8 1.2E-07 2.7E-12 91.8 13.6 103 38-142 3-166 (375)
94 KOG3851 Sulfide:quinone oxidor 98.8 1.8E-07 3.9E-12 86.3 13.5 193 2-206 142-357 (446)
95 PF03486 HI0933_like: HI0933-l 98.7 6.4E-08 1.4E-12 94.9 11.1 99 41-140 2-167 (409)
96 PF00743 FMO-like: Flavin-bind 98.7 4.5E-08 9.7E-13 99.1 10.2 181 4-209 151-396 (531)
97 PLN02172 flavin-containing mon 98.7 3.5E-07 7.5E-12 91.3 15.8 136 38-176 9-215 (461)
98 PF13738 Pyr_redox_3: Pyridine 98.7 1.2E-07 2.6E-12 83.7 11.0 98 43-142 1-143 (203)
99 PRK07236 hypothetical protein; 98.7 1.6E-07 3.4E-12 91.7 11.9 102 38-141 5-156 (386)
100 PRK12779 putative bifunctional 98.6 1.2E-07 2.5E-12 102.0 10.1 93 38-140 305-406 (944)
101 PRK12770 putative glutamate sy 98.6 1.1E-07 2.4E-12 91.7 8.8 100 38-138 17-129 (352)
102 PF02852 Pyr_redox_dim: Pyridi 98.6 2.5E-08 5.5E-13 79.8 3.4 82 221-306 3-105 (110)
103 PTZ00318 NADH dehydrogenase-li 98.6 3.1E-07 6.6E-12 90.9 11.3 102 38-142 9-128 (424)
104 TIGR02374 nitri_red_nirB nitri 98.6 1.7E-07 3.7E-12 99.4 10.0 97 42-142 1-111 (785)
105 TIGR03169 Nterm_to_SelD pyridi 98.6 2.5E-07 5.5E-12 89.4 10.4 97 41-142 1-110 (364)
106 PRK11749 dihydropyrimidine deh 98.6 1.5E-07 3.2E-12 94.0 8.5 90 38-138 139-236 (457)
107 TIGR02032 GG-red-SF geranylger 98.6 8.6E-07 1.9E-11 82.4 12.9 97 41-139 2-148 (295)
108 PRK09853 putative selenate red 98.6 3.5E-07 7.6E-12 97.7 11.2 91 38-140 538-636 (1019)
109 PRK10262 thioredoxin reductase 98.5 2.4E-06 5.2E-11 81.2 15.5 100 38-141 5-119 (321)
110 PRK14989 nitrite reductase sub 98.5 4.1E-07 8.9E-12 96.9 11.0 100 39-142 3-116 (847)
111 PRK06834 hypothetical protein; 98.5 1.4E-06 3E-11 87.8 13.9 100 40-141 4-158 (488)
112 TIGR01316 gltA glutamate synth 98.5 2.7E-07 5.9E-12 91.9 8.3 93 38-141 132-233 (449)
113 COG1252 Ndh NADH dehydrogenase 98.5 6E-07 1.3E-11 87.2 10.2 99 39-142 3-114 (405)
114 PRK13512 coenzyme A disulfide 98.5 9.4E-07 2E-11 87.8 11.5 101 40-142 2-120 (438)
115 PRK08773 2-octaprenyl-3-methyl 98.5 1.9E-06 4.1E-11 84.2 13.1 101 39-141 6-171 (392)
116 COG1635 THI4 Ribulose 1,5-bisp 98.5 7.6E-06 1.7E-10 72.2 15.3 166 39-207 30-257 (262)
117 PRK08163 salicylate hydroxylas 98.5 1.8E-06 3.9E-11 84.3 12.9 102 38-141 3-168 (396)
118 PRK07045 putative monooxygenas 98.5 2.7E-06 5.8E-11 83.0 13.8 102 40-141 6-167 (388)
119 PRK08244 hypothetical protein; 98.5 2.1E-06 4.5E-11 86.6 13.3 102 40-141 3-161 (493)
120 PF01266 DAO: FAD dependent ox 98.5 1.4E-06 3E-11 83.1 11.4 56 83-140 149-204 (358)
121 TIGR01317 GOGAT_sm_gam glutama 98.5 8.8E-07 1.9E-11 89.1 10.5 90 38-138 142-239 (485)
122 PRK12831 putative oxidoreducta 98.5 4.6E-07 9.9E-12 90.7 8.2 94 38-141 139-243 (464)
123 TIGR01424 gluta_reduc_2 glutat 98.4 1.6E-06 3.4E-11 86.4 11.9 95 41-142 4-145 (446)
124 PLN02463 lycopene beta cyclase 98.4 2E-06 4.3E-11 85.5 12.4 98 40-140 29-170 (447)
125 COG0654 UbiH 2-polyprenyl-6-me 98.4 2.8E-06 6.2E-11 83.0 13.3 101 39-141 2-164 (387)
126 TIGR01318 gltD_gamma_fam gluta 98.4 6.3E-07 1.4E-11 89.7 8.7 93 38-141 140-240 (467)
127 TIGR03143 AhpF_homolog putativ 98.4 2.6E-06 5.7E-11 87.1 13.3 98 40-142 5-117 (555)
128 PRK04965 NADH:flavorubredoxin 98.4 2.2E-06 4.8E-11 83.4 11.9 98 40-142 3-114 (377)
129 PLN02661 Putative thiazole syn 98.4 1.6E-05 3.4E-10 76.0 17.2 167 38-208 91-326 (357)
130 PRK07588 hypothetical protein; 98.4 3.1E-06 6.7E-11 82.7 12.9 98 41-141 2-160 (391)
131 PRK05868 hypothetical protein; 98.4 2.8E-06 6.2E-11 82.6 12.5 100 40-141 2-162 (372)
132 PRK05714 2-octaprenyl-3-methyl 98.4 3.2E-06 6.9E-11 83.0 12.9 100 40-141 3-170 (405)
133 PRK06184 hypothetical protein; 98.4 3.7E-06 8.1E-11 85.0 13.4 99 40-140 4-169 (502)
134 PF01134 GIDA: Glucose inhibit 98.4 2.4E-06 5.2E-11 82.7 11.3 95 41-137 1-150 (392)
135 PLN02852 ferredoxin-NADP+ redu 98.4 8.9E-07 1.9E-11 88.6 8.6 92 38-140 25-127 (491)
136 PRK07333 2-octaprenyl-6-methox 98.4 4E-06 8.7E-11 82.0 13.0 98 41-140 3-168 (403)
137 PRK12778 putative bifunctional 98.4 8.2E-07 1.8E-11 94.0 8.7 94 38-141 430-532 (752)
138 COG0492 TrxB Thioredoxin reduc 98.4 1.1E-05 2.4E-10 76.1 14.8 99 40-142 4-118 (305)
139 TIGR03315 Se_ygfK putative sel 98.4 1.6E-06 3.4E-11 93.1 9.7 90 39-140 537-634 (1012)
140 TIGR01984 UbiH 2-polyprenyl-6- 98.3 6E-06 1.3E-10 80.2 13.0 98 41-140 1-163 (382)
141 PRK07608 ubiquinone biosynthes 98.3 6.3E-06 1.4E-10 80.2 13.2 98 40-140 6-168 (388)
142 PRK01438 murD UDP-N-acetylmura 98.3 2.6E-06 5.6E-11 85.7 10.1 82 38-145 15-96 (480)
143 PRK06116 glutathione reductase 98.3 3.3E-06 7.2E-11 84.1 10.8 94 40-142 5-146 (450)
144 PF01494 FAD_binding_3: FAD bi 98.3 4.8E-06 1E-10 79.2 11.5 102 41-142 3-175 (356)
145 PRK06753 hypothetical protein; 98.3 3.4E-06 7.4E-11 81.7 10.6 100 41-142 2-155 (373)
146 PRK10157 putative oxidoreducta 98.3 8E-06 1.7E-10 80.9 13.3 97 40-138 6-163 (428)
147 PRK12810 gltD glutamate syntha 98.3 1.6E-06 3.4E-11 87.0 8.3 91 38-139 142-240 (471)
148 PRK12809 putative oxidoreducta 98.3 1.5E-06 3.2E-11 90.4 8.3 92 38-140 309-408 (639)
149 PRK12775 putative trifunctiona 98.3 1.6E-06 3.4E-11 94.2 8.6 93 38-140 429-531 (1006)
150 PRK09126 hypothetical protein; 98.3 8.8E-06 1.9E-10 79.4 13.1 101 40-142 4-170 (392)
151 PRK07251 pyridine nucleotide-d 98.3 5.5E-06 1.2E-10 82.3 11.8 98 40-142 4-133 (438)
152 PRK08013 oxidoreductase; Provi 98.3 8.7E-06 1.9E-10 79.9 13.0 100 40-141 4-170 (400)
153 PRK08849 2-octaprenyl-3-methyl 98.3 7.4E-06 1.6E-10 79.9 12.4 101 40-142 4-170 (384)
154 PRK07364 2-octaprenyl-6-methox 98.3 8.9E-06 1.9E-10 79.9 13.0 101 39-141 18-183 (415)
155 PRK07190 hypothetical protein; 98.3 9.2E-06 2E-10 81.8 13.2 99 40-140 6-166 (487)
156 TIGR01988 Ubi-OHases Ubiquinon 98.3 1.1E-05 2.3E-10 78.3 13.2 98 41-140 1-164 (385)
157 PRK07845 flavoprotein disulfid 98.3 1.2E-05 2.7E-10 80.5 13.7 100 40-141 2-153 (466)
158 PRK08010 pyridine nucleotide-d 98.3 8.6E-06 1.9E-10 81.0 12.3 98 40-142 4-134 (441)
159 PF00743 FMO-like: Flavin-bind 98.3 1.7E-05 3.8E-10 80.4 14.6 136 40-176 2-194 (531)
160 PRK05249 soluble pyridine nucl 98.3 1.1E-05 2.3E-10 80.8 12.9 98 40-142 6-152 (461)
161 PRK06183 mhpA 3-(3-hydroxyphen 98.2 1.3E-05 2.7E-10 81.9 13.1 101 39-141 10-176 (538)
162 PLN02697 lycopene epsilon cycl 98.2 1.3E-05 2.8E-10 81.2 12.9 98 40-139 109-248 (529)
163 TIGR01790 carotene-cycl lycope 98.2 1.4E-05 3.1E-10 77.9 12.9 97 41-139 1-141 (388)
164 TIGR00137 gid_trmFO tRNA:m(5)U 98.2 4.5E-06 9.7E-11 82.0 9.2 104 41-146 2-144 (433)
165 PRK05976 dihydrolipoamide dehy 98.2 1.1E-05 2.3E-10 81.0 12.2 101 39-141 4-156 (472)
166 PRK08020 ubiF 2-octaprenyl-3-m 98.2 1.3E-05 2.8E-10 78.2 12.4 101 39-141 5-171 (391)
167 PRK06467 dihydrolipoamide dehy 98.2 1.2E-05 2.6E-10 80.6 12.4 96 40-140 5-149 (471)
168 PRK08132 FAD-dependent oxidore 98.2 1.5E-05 3.3E-10 81.4 13.3 103 39-141 23-187 (547)
169 COG3486 IucD Lysine/ornithine 98.2 9.4E-05 2E-09 70.9 17.2 163 40-209 188-414 (436)
170 PRK12814 putative NADPH-depend 98.2 3.8E-06 8.2E-11 87.5 8.6 92 38-140 192-291 (652)
171 PRK12769 putative oxidoreducta 98.2 3.5E-06 7.7E-11 87.9 8.3 91 38-139 326-424 (654)
172 PRK06475 salicylate hydroxylas 98.2 2E-05 4.4E-10 77.3 13.1 100 40-141 3-169 (400)
173 PRK06617 2-octaprenyl-6-methox 98.2 1.8E-05 3.9E-10 77.0 12.4 99 41-142 3-163 (374)
174 PF13434 K_oxygenase: L-lysine 98.2 3.9E-06 8.4E-11 80.6 7.6 117 16-138 172-340 (341)
175 PRK08850 2-octaprenyl-6-methox 98.2 1.6E-05 3.5E-10 78.1 12.1 101 39-141 4-170 (405)
176 PRK10015 oxidoreductase; Provi 98.2 2.2E-05 4.8E-10 77.8 13.0 98 40-139 6-164 (429)
177 PRK06416 dihydrolipoamide dehy 98.2 1.8E-05 4E-10 79.1 12.4 96 40-141 5-148 (462)
178 PTZ00188 adrenodoxin reductase 98.2 6.6E-06 1.4E-10 81.7 9.0 92 38-140 38-139 (506)
179 TIGR01421 gluta_reduc_1 glutat 98.2 1.3E-05 2.9E-10 79.9 11.1 94 40-142 3-144 (450)
180 PRK07494 2-octaprenyl-6-methox 98.2 2.6E-05 5.6E-10 76.0 12.9 100 39-141 7-169 (388)
181 COG0644 FixC Dehydrogenases (f 98.1 2.8E-05 6E-10 76.3 12.6 100 40-140 4-153 (396)
182 PRK05192 tRNA uridine 5-carbox 98.1 2.5E-05 5.4E-10 79.7 12.4 96 40-137 5-155 (618)
183 TIGR01372 soxA sarcosine oxida 98.1 2.7E-05 5.9E-10 84.8 13.5 101 39-141 163-288 (985)
184 PRK06185 hypothetical protein; 98.1 4.7E-05 1E-09 74.6 13.6 101 39-140 6-170 (407)
185 TIGR03219 salicylate_mono sali 98.1 1.8E-05 3.8E-10 78.0 10.4 98 41-140 2-160 (414)
186 PRK06115 dihydrolipoamide dehy 98.1 2.8E-05 6.1E-10 77.9 11.8 96 40-140 4-149 (466)
187 TIGR03378 glycerol3P_GlpB glyc 98.1 0.0001 2.3E-09 72.2 15.3 152 45-206 230-419 (419)
188 TIGR01789 lycopene_cycl lycope 98.1 1.8E-05 4E-10 76.9 9.9 94 41-140 1-139 (370)
189 TIGR00275 flavoprotein, HI0933 98.1 3.6E-05 7.9E-10 75.6 12.0 94 43-139 1-160 (400)
190 PRK05732 2-octaprenyl-6-methox 98.1 4.3E-05 9.3E-10 74.5 12.4 99 40-140 4-170 (395)
191 PRK08243 4-hydroxybenzoate 3-m 98.1 6E-05 1.3E-09 73.7 13.3 100 40-141 3-165 (392)
192 PRK06370 mercuric reductase; V 98.1 2.6E-05 5.6E-10 78.1 10.6 95 40-142 6-148 (463)
193 PRK13984 putative oxidoreducta 98.0 1.2E-05 2.7E-10 83.1 8.4 91 38-139 282-380 (604)
194 PF14759 Reductase_C: Reductas 98.0 9.4E-05 2E-09 56.2 11.1 75 219-295 1-77 (85)
195 COG2072 TrkA Predicted flavopr 98.0 0.00012 2.5E-09 72.9 15.0 137 39-176 8-186 (443)
196 PF04820 Trp_halogenase: Trypt 98.0 6.7E-05 1.4E-09 74.9 12.8 57 83-140 156-212 (454)
197 PRK12771 putative glutamate sy 98.0 1.5E-05 3.2E-10 81.8 8.4 91 38-140 136-235 (564)
198 TIGR01989 COQ6 Ubiquinone bios 98.0 6.1E-05 1.3E-09 74.8 12.6 102 41-142 2-186 (437)
199 TIGR00136 gidA glucose-inhibit 98.0 8.8E-05 1.9E-09 75.7 13.6 98 41-139 2-154 (617)
200 PRK11728 hydroxyglutarate oxid 98.0 7.5E-05 1.6E-09 73.1 12.7 50 88-140 156-205 (393)
201 PRK06481 fumarate reductase fl 98.0 0.00011 2.3E-09 74.5 14.0 106 40-146 62-259 (506)
202 PRK09897 hypothetical protein; 98.0 0.00011 2.3E-09 74.7 13.6 99 40-140 2-167 (534)
203 COG0579 Predicted dehydrogenas 98.0 9E-05 1.9E-09 72.7 12.6 57 83-140 155-212 (429)
204 PF12831 FAD_oxidored: FAD dep 98.0 6.4E-06 1.4E-10 81.6 4.7 96 41-137 1-148 (428)
205 PRK14694 putative mercuric red 98.0 3.3E-05 7.2E-10 77.4 9.9 99 39-142 6-155 (468)
206 PRK06567 putative bifunctional 98.0 1.5E-05 3.2E-10 84.8 7.4 35 38-72 382-416 (1028)
207 TIGR02053 MerA mercuric reduct 98.0 5.1E-05 1.1E-09 75.9 11.1 94 41-142 2-143 (463)
208 TIGR01813 flavo_cyto_c flavocy 98.0 0.00012 2.7E-09 72.6 13.7 105 41-145 1-199 (439)
209 KOG1399 Flavin-containing mono 98.0 0.00014 3.1E-09 72.0 13.8 138 38-176 5-197 (448)
210 KOG1800 Ferredoxin/adrenodoxin 98.0 3.4E-05 7.4E-10 73.1 8.8 54 4-60 120-180 (468)
211 PRK13748 putative mercuric red 98.0 0.00013 2.8E-09 74.8 13.8 111 26-142 78-247 (561)
212 PRK06996 hypothetical protein; 98.0 8.9E-05 1.9E-09 72.7 12.1 98 39-138 11-173 (398)
213 TIGR01350 lipoamide_DH dihydro 97.9 7.2E-05 1.6E-09 74.7 11.4 95 41-141 3-145 (461)
214 TIGR02360 pbenz_hydroxyl 4-hyd 97.9 0.00012 2.6E-09 71.7 12.6 101 40-141 3-165 (390)
215 KOG0399 Glutamate synthase [Am 97.9 2.2E-05 4.7E-10 82.7 7.6 92 38-140 1784-1883(2142)
216 PRK07538 hypothetical protein; 97.9 0.0001 2.3E-09 72.5 12.1 99 41-141 2-167 (413)
217 PRK06126 hypothetical protein; 97.9 0.00014 3E-09 74.4 13.2 100 39-140 7-189 (545)
218 COG0493 GltD NADPH-dependent g 97.9 1.6E-05 3.5E-10 78.9 6.1 90 38-138 122-219 (457)
219 KOG1336 Monodehydroascorbate/f 97.9 4.8E-05 1E-09 74.2 9.0 99 39-141 74-183 (478)
220 PRK06912 acoL dihydrolipoamide 97.9 0.00014 3E-09 72.7 12.7 96 41-141 2-146 (458)
221 PF01946 Thi4: Thi4 family; PD 97.9 0.00019 4.1E-09 63.7 11.7 103 39-141 17-167 (230)
222 TIGR01377 soxA_mon sarcosine o 97.9 0.00019 4E-09 69.6 13.0 31 41-71 2-32 (380)
223 PF05834 Lycopene_cycl: Lycope 97.9 0.00013 2.9E-09 71.0 11.9 97 41-140 1-143 (374)
224 TIGR02023 BchP-ChlP geranylger 97.9 0.00016 3.5E-09 70.7 12.4 97 41-140 2-156 (388)
225 PRK11445 putative oxidoreducta 97.9 0.00022 4.7E-09 68.8 13.1 98 41-141 3-159 (351)
226 PTZ00058 glutathione reductase 97.8 0.00019 4.1E-09 73.4 12.7 97 41-142 50-217 (561)
227 PLN02546 glutathione reductase 97.8 9.9E-05 2.1E-09 75.5 10.6 94 41-142 81-231 (558)
228 PRK06327 dihydrolipoamide dehy 97.8 0.0002 4.3E-09 72.0 12.7 101 40-141 5-159 (475)
229 PRK11259 solA N-methyltryptoph 97.8 0.00029 6.3E-09 68.1 12.9 33 40-72 4-36 (376)
230 PF13738 Pyr_redox_3: Pyridine 97.8 1.3E-05 2.7E-10 70.7 2.9 62 4-73 139-201 (203)
231 PRK07818 dihydrolipoamide dehy 97.8 0.00016 3.5E-09 72.4 10.9 32 40-71 5-36 (466)
232 PRK12409 D-amino acid dehydrog 97.8 0.00037 8E-09 68.5 13.1 33 40-72 2-34 (410)
233 PLN02507 glutathione reductase 97.8 0.00036 7.7E-09 70.6 13.2 97 41-142 27-182 (499)
234 TIGR02028 ChlP geranylgeranyl 97.8 0.00041 9E-09 68.1 13.1 100 41-141 2-162 (398)
235 PF13454 NAD_binding_9: FAD-NA 97.8 0.00038 8.2E-09 59.1 11.2 93 43-137 1-155 (156)
236 PRK01747 mnmC bifunctional tRN 97.8 0.00025 5.5E-09 74.2 12.1 33 40-72 261-293 (662)
237 PRK14727 putative mercuric red 97.7 0.00036 7.8E-09 70.2 12.6 99 39-142 16-165 (479)
238 PRK07121 hypothetical protein; 97.7 0.00061 1.3E-08 68.8 14.1 61 86-146 182-247 (492)
239 PRK08274 tricarballylate dehyd 97.7 0.00058 1.3E-08 68.4 13.7 106 40-146 5-200 (466)
240 COG1148 HdrA Heterodisulfide r 97.7 7.6E-05 1.6E-09 72.8 6.7 71 39-109 124-206 (622)
241 PLN02927 antheraxanthin epoxid 97.7 0.00037 7.9E-09 72.3 12.1 35 38-72 80-114 (668)
242 PRK00711 D-amino acid dehydrog 97.7 0.00049 1.1E-08 67.6 12.5 32 41-72 2-33 (416)
243 TIGR01373 soxB sarcosine oxida 97.7 0.00075 1.6E-08 66.2 13.7 51 87-138 189-239 (407)
244 PRK06292 dihydrolipoamide dehy 97.7 0.00025 5.5E-09 70.8 10.3 31 41-71 5-35 (460)
245 KOG2495 NADH-dehydrogenase (ub 97.7 0.00023 4.9E-09 68.6 9.3 103 38-142 54-173 (491)
246 COG1251 NirB NAD(P)H-nitrite r 97.7 0.00019 4.2E-09 73.4 9.4 103 39-145 3-119 (793)
247 COG3634 AhpF Alkyl hydroperoxi 97.7 0.00025 5.4E-09 66.7 9.2 101 38-138 210-324 (520)
248 PRK11101 glpA sn-glycerol-3-ph 97.7 0.00057 1.2E-08 69.9 12.9 32 40-71 7-38 (546)
249 PLN02985 squalene monooxygenas 97.7 0.00059 1.3E-08 69.3 12.8 34 39-72 43-76 (514)
250 PF00890 FAD_binding_2: FAD bi 97.6 0.00051 1.1E-08 67.6 11.8 58 82-140 142-204 (417)
251 PLN00093 geranylgeranyl diphos 97.6 0.001 2.2E-08 66.4 13.2 101 39-140 39-200 (450)
252 COG3075 GlpB Anaerobic glycero 97.6 0.00033 7.1E-09 65.5 8.7 125 79-208 256-416 (421)
253 TIGR01438 TGR thioredoxin and 97.6 0.0009 2E-08 67.4 12.6 97 41-142 4-158 (484)
254 PRK08294 phenol 2-monooxygenas 97.6 0.00092 2E-08 69.6 12.8 103 39-141 32-212 (634)
255 TIGR03329 Phn_aa_oxid putative 97.5 0.00084 1.8E-08 67.2 11.6 32 40-71 25-58 (460)
256 PRK08401 L-aspartate oxidase; 97.5 0.0012 2.6E-08 66.2 12.7 97 40-139 2-175 (466)
257 TIGR03364 HpnW_proposed FAD de 97.5 0.0012 2.7E-08 63.6 12.4 31 41-71 2-32 (365)
258 PLN02464 glycerol-3-phosphate 97.5 0.0015 3.2E-08 67.9 13.5 33 39-71 71-103 (627)
259 PRK07843 3-ketosteroid-delta-1 97.5 0.0002 4.4E-09 73.4 6.7 107 38-146 159-277 (557)
260 PTZ00188 adrenodoxin reductase 97.5 0.0018 3.8E-08 64.7 12.9 83 94-183 324-422 (506)
261 PRK07804 L-aspartate oxidase; 97.5 0.0017 3.7E-08 66.4 12.9 99 40-138 17-209 (541)
262 PTZ00052 thioredoxin reductase 97.4 0.00047 1E-08 69.7 8.3 31 40-70 6-36 (499)
263 PRK07846 mycothione reductase; 97.4 0.00046 1E-08 68.9 7.9 93 41-142 3-143 (451)
264 PRK08275 putative oxidoreducta 97.4 0.0025 5.4E-08 65.4 13.3 100 40-139 10-200 (554)
265 TIGR01812 sdhA_frdA_Gneg succi 97.4 0.0024 5.3E-08 65.6 13.2 32 41-72 1-32 (566)
266 COG3380 Predicted NAD/FAD-depe 97.4 0.00078 1.7E-08 61.5 8.2 93 41-137 3-158 (331)
267 PF13450 NAD_binding_8: NAD(P) 97.4 0.0003 6.4E-09 51.1 4.5 34 44-77 1-34 (68)
268 TIGR02485 CobZ_N-term precorri 97.3 0.0027 5.8E-08 63.0 12.5 61 86-146 128-191 (432)
269 COG4529 Uncharacterized protei 97.3 0.0021 4.4E-08 63.3 11.0 102 40-142 2-167 (474)
270 COG1249 Lpd Pyruvate/2-oxoglut 97.3 0.0019 4.1E-08 64.3 11.1 98 40-142 5-150 (454)
271 COG2072 TrkA Predicted flavopr 97.3 0.00023 4.9E-09 70.9 4.6 65 4-75 145-211 (443)
272 PRK13977 myosin-cross-reactive 97.3 0.0042 9E-08 63.2 13.5 54 85-138 230-292 (576)
273 PTZ00383 malate:quinone oxidor 97.3 0.0035 7.6E-08 63.3 13.0 54 84-139 214-273 (497)
274 PRK06175 L-aspartate oxidase; 97.3 0.0037 8.1E-08 62.1 13.0 55 83-138 130-188 (433)
275 KOG2820 FAD-dependent oxidored 97.3 0.0031 6.6E-08 59.3 11.4 54 85-138 157-211 (399)
276 PRK12266 glpD glycerol-3-phosp 97.3 0.0025 5.4E-08 64.7 12.0 32 40-71 7-38 (508)
277 TIGR01811 sdhA_Bsu succinate d 97.3 0.0035 7.7E-08 64.9 13.0 31 42-72 1-31 (603)
278 KOG0404 Thioredoxin reductase 97.3 0.0023 5E-08 56.9 9.8 99 39-141 8-126 (322)
279 PRK12842 putative succinate de 97.3 0.00043 9.3E-09 71.3 6.1 102 38-141 156-277 (574)
280 TIGR01423 trypano_reduc trypan 97.3 0.0023 5.1E-08 64.5 11.2 31 40-70 4-35 (486)
281 TIGR00551 nadB L-aspartate oxi 97.2 0.004 8.8E-08 62.8 12.6 97 41-139 4-189 (488)
282 PRK07573 sdhA succinate dehydr 97.2 0.0049 1.1E-07 64.3 13.5 47 90-137 179-230 (640)
283 PRK06854 adenylylsulfate reduc 97.2 0.0049 1.1E-07 63.9 13.4 33 40-72 12-46 (608)
284 PRK09078 sdhA succinate dehydr 97.2 0.0048 1E-07 63.9 13.2 52 86-137 154-210 (598)
285 PRK06263 sdhA succinate dehydr 97.2 0.0048 1E-07 63.1 13.0 98 40-138 8-196 (543)
286 TIGR03452 mycothione_red mycot 97.2 0.0014 3.1E-08 65.4 8.6 92 41-142 4-146 (452)
287 PTZ00139 Succinate dehydrogena 97.2 0.0055 1.2E-07 63.6 13.2 32 40-71 30-61 (617)
288 PRK14106 murD UDP-N-acetylmura 97.2 0.0019 4.2E-08 64.3 9.6 83 38-145 4-86 (450)
289 PRK06452 sdhA succinate dehydr 97.2 0.0045 9.8E-08 63.6 12.4 97 40-137 6-196 (566)
290 PRK05335 tRNA (uracil-5-)-meth 97.2 0.00053 1.1E-08 67.3 5.2 36 40-75 3-38 (436)
291 PRK13369 glycerol-3-phosphate 97.2 0.0041 8.8E-08 63.0 11.8 32 40-71 7-38 (502)
292 PRK12843 putative FAD-binding 97.1 0.0081 1.8E-07 61.9 14.0 58 87-145 227-289 (578)
293 COG2509 Uncharacterized FAD-de 97.1 0.0032 6.9E-08 61.4 10.0 85 57-143 149-234 (486)
294 PRK08958 sdhA succinate dehydr 97.1 0.0074 1.6E-07 62.3 13.2 31 41-71 9-39 (588)
295 PRK05945 sdhA succinate dehydr 97.1 0.0073 1.6E-07 62.2 13.0 53 85-138 139-196 (575)
296 PRK12835 3-ketosteroid-delta-1 97.1 0.01 2.2E-07 61.3 14.0 57 90-146 222-283 (584)
297 COG0445 GidA Flavin-dependent 97.1 0.0017 3.8E-08 64.6 7.6 96 40-137 5-156 (621)
298 PRK08255 salicylyl-CoA 5-hydro 97.0 0.0017 3.6E-08 69.2 8.0 33 41-73 2-36 (765)
299 KOG2614 Kynurenine 3-monooxyge 97.0 0.0032 6.9E-08 60.7 9.1 35 40-74 3-37 (420)
300 PRK07057 sdhA succinate dehydr 97.0 0.011 2.5E-07 61.0 13.5 32 40-71 13-44 (591)
301 PLN00128 Succinate dehydrogena 97.0 0.0098 2.1E-07 61.9 13.0 31 41-71 52-82 (635)
302 PRK07803 sdhA succinate dehydr 96.9 0.01 2.2E-07 61.8 12.7 33 40-72 9-41 (626)
303 PRK08205 sdhA succinate dehydr 96.9 0.016 3.4E-07 59.9 13.6 55 85-139 144-206 (583)
304 PRK06069 sdhA succinate dehydr 96.9 0.014 3E-07 60.2 12.9 32 41-72 7-41 (577)
305 PTZ00153 lipoamide dehydrogena 96.9 0.0086 1.9E-07 62.5 11.1 31 41-71 118-148 (659)
306 PRK06134 putative FAD-binding 96.8 0.017 3.8E-07 59.5 13.1 54 86-140 222-279 (581)
307 PRK08641 sdhA succinate dehydr 96.8 0.016 3.6E-07 59.8 12.6 33 39-71 3-35 (589)
308 PF02558 ApbA: Ketopantoate re 96.8 0.0042 9.1E-08 52.1 6.7 83 42-145 1-85 (151)
309 KOG2311 NAD/FAD-utilizing prot 96.8 0.0069 1.5E-07 59.4 8.8 32 40-71 29-60 (679)
310 PRK08071 L-aspartate oxidase; 96.8 0.012 2.6E-07 59.8 11.1 32 40-72 4-35 (510)
311 KOG2404 Fumarate reductase, fl 96.7 0.012 2.6E-07 55.2 9.6 101 39-140 9-207 (477)
312 KOG0029 Amine oxidase [Seconda 96.7 0.0021 4.6E-08 64.7 5.3 40 38-77 14-53 (501)
313 PRK05320 rhodanese superfamily 96.7 0.0019 4.2E-08 59.5 4.5 72 263-338 46-122 (257)
314 PRK08626 fumarate reductase fl 96.7 0.022 4.8E-07 59.6 12.9 32 40-71 6-37 (657)
315 PRK07395 L-aspartate oxidase; 96.7 0.012 2.6E-07 60.3 10.7 32 40-72 10-41 (553)
316 PTZ00306 NADH-dependent fumara 96.7 0.022 4.7E-07 63.5 13.2 35 39-73 409-443 (1167)
317 COG1148 HdrA Heterodisulfide r 96.7 0.013 2.7E-07 57.8 9.8 125 62-203 400-538 (622)
318 PRK12837 3-ketosteroid-delta-1 96.6 0.034 7.4E-07 56.5 13.4 32 40-72 8-39 (513)
319 PRK12834 putative FAD-binding 96.6 0.029 6.4E-07 57.5 13.0 33 40-72 5-37 (549)
320 TIGR01470 cysG_Nterm siroheme 96.6 0.0098 2.1E-07 52.9 8.2 107 38-175 8-120 (205)
321 PRK12844 3-ketosteroid-delta-1 96.6 0.039 8.4E-07 56.7 13.6 32 40-71 7-38 (557)
322 PRK11883 protoporphyrinogen ox 96.6 0.0028 6.1E-08 62.8 5.1 36 40-75 1-38 (451)
323 PRK15116 sulfur acceptor prote 96.5 0.0085 1.9E-07 55.4 7.6 93 38-137 29-131 (268)
324 KOG1399 Flavin-containing mono 96.5 0.0047 1E-07 61.3 6.3 92 38-146 185-276 (448)
325 PRK09231 fumarate reductase fl 96.5 0.038 8.3E-07 57.0 13.2 32 41-72 6-39 (582)
326 PRK07512 L-aspartate oxidase; 96.5 0.02 4.3E-07 58.2 10.9 32 39-72 9-40 (513)
327 PLN02815 L-aspartate oxidase 96.5 0.024 5.2E-07 58.6 11.4 32 40-72 30-61 (594)
328 PRK07233 hypothetical protein; 96.5 0.0039 8.5E-08 61.3 5.3 36 41-76 1-36 (434)
329 COG3349 Uncharacterized conser 96.5 0.0037 8.1E-08 62.0 4.9 37 40-76 1-37 (485)
330 TIGR01176 fum_red_Fp fumarate 96.4 0.046 1E-06 56.4 13.1 32 41-72 5-38 (580)
331 KOG3851 Sulfide:quinone oxidor 96.4 0.0013 2.9E-08 61.2 1.6 104 39-147 39-153 (446)
332 TIGR03385 CoA_CoA_reduc CoA-di 96.4 0.013 2.8E-07 57.9 8.7 87 54-142 2-106 (427)
333 PLN02268 probable polyamine ox 96.4 0.0044 9.6E-08 61.4 5.2 38 40-77 1-38 (435)
334 PRK12845 3-ketosteroid-delta-1 96.4 0.04 8.7E-07 56.7 12.3 57 88-145 224-285 (564)
335 PRK12839 hypothetical protein; 96.4 0.051 1.1E-06 56.0 13.0 59 87-145 220-283 (572)
336 COG0446 HcaD Uncharacterized N 96.4 0.023 4.9E-07 55.2 10.0 96 42-142 1-109 (415)
337 KOG2755 Oxidoreductase [Genera 96.4 0.0059 1.3E-07 55.5 5.1 93 41-142 1-107 (334)
338 COG0578 GlpA Glycerol-3-phosph 96.3 0.041 8.9E-07 55.5 11.2 33 39-71 12-44 (532)
339 KOG2415 Electron transfer flav 96.3 0.029 6.4E-07 54.3 9.5 102 40-141 77-258 (621)
340 PRK07208 hypothetical protein; 96.3 0.006 1.3E-07 61.2 5.3 39 38-76 3-41 (479)
341 TIGR02061 aprA adenosine phosp 96.3 0.075 1.6E-06 55.1 13.4 32 41-72 1-36 (614)
342 PRK09077 L-aspartate oxidase; 96.2 0.072 1.6E-06 54.5 13.1 32 40-72 9-40 (536)
343 KOG2852 Possible oxidoreductas 96.2 0.013 2.9E-07 54.0 6.6 34 38-71 9-48 (380)
344 COG1233 Phytoene dehydrogenase 96.2 0.0065 1.4E-07 61.3 5.1 37 39-75 3-39 (487)
345 PRK02705 murD UDP-N-acetylmura 96.1 0.023 4.9E-07 56.8 8.6 85 41-145 2-86 (459)
346 PTZ00367 squalene epoxidase; P 96.1 0.01 2.3E-07 60.9 6.1 33 40-72 34-66 (567)
347 PRK01710 murD UDP-N-acetylmura 96.1 0.031 6.8E-07 55.9 9.3 92 26-145 4-95 (458)
348 TIGR02733 desat_CrtD C-3',4' d 96.1 0.0078 1.7E-07 60.7 5.0 36 40-75 2-37 (492)
349 PLN03000 amine oxidase 96.1 0.015 3.2E-07 62.0 7.1 56 22-77 166-222 (881)
350 TIGR00562 proto_IX_ox protopor 96.0 0.0086 1.9E-07 59.7 4.9 36 40-75 3-42 (462)
351 PLN02576 protoporphyrinogen ox 96.0 0.011 2.3E-07 59.7 5.5 39 38-76 11-50 (496)
352 TIGR02734 crtI_fam phytoene de 95.9 0.0082 1.8E-07 60.7 4.4 34 42-75 1-34 (502)
353 TIGR02731 phytoene_desat phyto 95.8 0.011 2.4E-07 58.9 4.9 36 41-76 1-36 (453)
354 COG0665 DadA Glycine/D-amino a 95.8 0.012 2.5E-07 57.1 4.9 34 39-72 4-37 (387)
355 PF06039 Mqo: Malate:quinone o 95.8 0.092 2E-06 51.9 10.9 91 87-177 187-293 (488)
356 COG0562 Glf UDP-galactopyranos 95.8 0.014 3.1E-07 54.7 5.0 38 41-78 3-40 (374)
357 PRK12416 protoporphyrinogen ox 95.8 0.012 2.6E-07 58.8 4.8 37 40-76 2-44 (463)
358 PRK02472 murD UDP-N-acetylmura 95.7 0.031 6.6E-07 55.7 7.6 83 38-145 4-86 (447)
359 PRK06249 2-dehydropantoate 2-r 95.7 0.083 1.8E-06 50.1 10.2 33 39-71 5-37 (313)
360 PLN02529 lysine-specific histo 95.7 0.015 3.3E-07 61.2 5.5 37 38-74 159-195 (738)
361 PF02737 3HCDH_N: 3-hydroxyacy 95.7 0.012 2.6E-07 51.3 4.0 36 41-76 1-36 (180)
362 PF13241 NAD_binding_7: Putati 95.6 0.012 2.6E-07 46.2 3.4 35 38-72 6-40 (103)
363 PRK13800 putative oxidoreducta 95.6 0.17 3.7E-06 55.0 13.1 33 40-72 14-46 (897)
364 PRK06719 precorrin-2 dehydroge 95.6 0.021 4.4E-07 48.6 4.9 32 38-69 12-43 (157)
365 PRK04308 murD UDP-N-acetylmura 95.5 0.048 1E-06 54.3 8.0 80 38-145 4-85 (445)
366 PF13434 K_oxygenase: L-lysine 95.5 0.041 8.8E-07 52.9 7.0 102 41-142 4-162 (341)
367 PRK08229 2-dehydropantoate 2-r 95.4 0.072 1.6E-06 51.0 8.7 32 40-71 3-34 (341)
368 TIGR00031 UDP-GALP_mutase UDP- 95.4 0.02 4.4E-07 55.7 4.9 36 41-76 3-38 (377)
369 COG1893 ApbA Ketopantoate redu 95.4 0.042 9.1E-07 52.0 6.8 80 41-142 2-82 (307)
370 COG1232 HemY Protoporphyrinoge 95.4 0.02 4.2E-07 56.8 4.7 35 40-74 1-37 (444)
371 PF14721 AIF_C: Apoptosis-indu 95.4 0.068 1.5E-06 43.0 6.8 32 201-234 1-33 (133)
372 COG0029 NadB Aspartate oxidase 95.4 0.1 2.3E-06 51.7 9.4 31 41-72 9-39 (518)
373 TIGR03862 flavo_PP4765 unchara 95.3 0.16 3.5E-06 49.4 10.8 84 51-139 56-141 (376)
374 PRK05708 2-dehydropantoate 2-r 95.3 0.076 1.6E-06 50.2 8.3 33 40-72 3-35 (305)
375 PRK12921 2-dehydropantoate 2-r 95.3 0.076 1.7E-06 49.8 8.2 30 41-70 2-31 (305)
376 TIGR02732 zeta_caro_desat caro 95.3 0.024 5.2E-07 57.1 5.0 35 41-75 1-35 (474)
377 PRK06854 adenylylsulfate reduc 95.2 0.022 4.8E-07 59.1 4.8 40 159-206 389-428 (608)
378 COG1231 Monoamine oxidase [Ami 95.2 0.028 6.1E-07 55.1 5.1 61 38-99 6-82 (450)
379 PRK00421 murC UDP-N-acetylmura 95.2 0.053 1.1E-06 54.3 7.1 77 38-144 6-83 (461)
380 PLN02487 zeta-carotene desatur 95.1 0.029 6.2E-07 57.6 5.2 36 40-75 76-111 (569)
381 PLN02612 phytoene desaturase 95.1 0.089 1.9E-06 54.2 8.7 55 82-136 309-363 (567)
382 TIGR02730 carot_isom carotene 95.1 0.027 5.9E-07 56.8 4.9 34 41-74 2-35 (493)
383 TIGR01320 mal_quin_oxido malat 95.1 0.026 5.6E-07 56.9 4.7 32 41-72 2-35 (483)
384 PLN02328 lysine-specific histo 95.1 0.033 7.2E-07 59.2 5.5 37 38-74 237-273 (808)
385 PRK00141 murD UDP-N-acetylmura 95.0 0.086 1.9E-06 53.0 8.2 79 38-145 14-92 (473)
386 PF03721 UDPG_MGDP_dh_N: UDP-g 95.0 0.035 7.7E-07 48.5 4.7 55 40-94 1-62 (185)
387 PRK14192 bifunctional 5,10-met 95.0 0.075 1.6E-06 49.7 7.1 34 37-70 157-191 (283)
388 PRK08275 putative oxidoreducta 95.0 0.025 5.5E-07 58.0 4.3 45 153-206 357-401 (554)
389 PRK06718 precorrin-2 dehydroge 95.0 0.039 8.5E-07 49.0 4.9 33 38-70 9-41 (202)
390 PLN02612 phytoene desaturase 94.9 0.039 8.5E-07 56.8 5.5 38 38-75 92-129 (567)
391 PRK07819 3-hydroxybutyryl-CoA 94.9 0.03 6.6E-07 52.4 4.3 38 40-77 6-43 (286)
392 TIGR02352 thiamin_ThiO glycine 94.9 0.11 2.3E-06 49.2 8.1 56 81-138 137-192 (337)
393 PRK04148 hypothetical protein; 94.9 0.039 8.4E-07 45.5 4.2 43 30-73 8-50 (134)
394 PRK13800 putative oxidoreducta 94.8 0.028 6E-07 61.0 4.3 46 152-206 361-406 (897)
395 COG0771 MurD UDP-N-acetylmuram 94.8 0.096 2.1E-06 51.9 7.5 83 38-146 6-88 (448)
396 KOG1298 Squalene monooxygenase 94.7 0.031 6.8E-07 53.6 3.7 32 40-71 46-77 (509)
397 TIGR02730 carot_isom carotene 94.6 0.14 3.1E-06 51.6 8.6 57 81-138 229-285 (493)
398 PRK09424 pntA NAD(P) transhydr 94.6 0.11 2.4E-06 52.5 7.6 104 38-158 164-283 (509)
399 PLN02568 polyamine oxidase 94.6 0.054 1.2E-06 55.4 5.4 38 39-76 5-47 (539)
400 KOG1800 Ferredoxin/adrenodoxin 94.5 0.12 2.6E-06 49.6 7.2 92 40-142 21-123 (468)
401 PF01488 Shikimate_DH: Shikima 94.5 0.14 3E-06 42.2 6.9 35 37-71 10-45 (135)
402 PLN02676 polyamine oxidase 94.5 0.063 1.4E-06 54.2 5.5 39 38-76 25-64 (487)
403 COG4529 Uncharacterized protei 94.4 0.76 1.6E-05 45.6 12.6 35 38-72 195-231 (474)
404 TIGR00561 pntA NAD(P) transhyd 94.4 0.16 3.4E-06 51.4 8.0 35 38-72 163-197 (511)
405 PRK03369 murD UDP-N-acetylmura 94.4 0.14 3.1E-06 51.7 7.9 78 38-145 11-88 (488)
406 KOG0685 Flavin-containing amin 94.4 0.075 1.6E-06 52.4 5.6 40 38-77 20-60 (498)
407 TIGR02731 phytoene_desat phyto 94.3 0.18 4E-06 50.1 8.5 57 81-137 213-274 (453)
408 COG2085 Predicted dinucleotide 94.3 0.093 2E-06 46.5 5.4 91 40-159 2-92 (211)
409 PRK05257 malate:quinone oxidor 94.2 0.053 1.1E-06 54.8 4.5 34 40-73 6-41 (494)
410 PRK07066 3-hydroxybutyryl-CoA 94.2 0.058 1.3E-06 51.4 4.4 37 39-75 7-43 (321)
411 TIGR02734 crtI_fam phytoene de 94.2 0.2 4.3E-06 50.6 8.5 57 81-138 219-275 (502)
412 PRK08293 3-hydroxybutyryl-CoA 94.1 0.072 1.6E-06 49.8 4.8 35 40-74 4-38 (287)
413 cd01080 NAD_bind_m-THF_DH_Cycl 93.9 0.24 5.2E-06 42.6 7.3 50 22-71 26-77 (168)
414 KOG1276 Protoporphyrinogen oxi 93.9 0.076 1.6E-06 51.7 4.5 38 38-75 10-49 (491)
415 PRK08071 L-aspartate oxidase; 93.9 0.08 1.7E-06 53.8 5.0 54 153-208 333-387 (510)
416 PRK04690 murD UDP-N-acetylmura 93.9 0.19 4.1E-06 50.5 7.6 81 38-145 7-87 (468)
417 PRK09231 fumarate reductase fl 93.8 0.079 1.7E-06 54.7 4.9 55 152-208 358-413 (582)
418 PRK06263 sdhA succinate dehydr 93.8 0.079 1.7E-06 54.2 4.8 55 151-208 347-402 (543)
419 PF01210 NAD_Gly3P_dh_N: NAD-d 93.8 0.078 1.7E-06 45.0 4.0 32 41-72 1-32 (157)
420 PRK09260 3-hydroxybutyryl-CoA 93.7 0.084 1.8E-06 49.4 4.5 35 40-74 2-36 (288)
421 PF00732 GMC_oxred_N: GMC oxid 93.6 0.091 2E-06 49.0 4.6 37 41-77 2-39 (296)
422 PRK07804 L-aspartate oxidase; 93.6 0.078 1.7E-06 54.3 4.3 55 151-207 356-411 (541)
423 PRK09077 L-aspartate oxidase; 93.5 0.095 2.1E-06 53.6 4.8 55 152-208 353-408 (536)
424 PRK05562 precorrin-2 dehydroge 93.4 0.13 2.7E-06 46.4 4.9 34 38-71 24-57 (223)
425 COG1206 Gid NAD(FAD)-utilizing 93.4 0.078 1.7E-06 50.0 3.6 35 40-74 4-38 (439)
426 KOG1346 Programmed cell death 93.4 0.12 2.5E-06 50.3 4.8 98 41-142 180-314 (659)
427 TIGR01176 fum_red_Fp fumarate 93.3 0.12 2.5E-06 53.5 5.0 55 152-208 357-412 (580)
428 PF00899 ThiF: ThiF family; I 93.2 0.099 2.1E-06 43.0 3.6 33 39-71 2-35 (135)
429 TIGR01082 murC UDP-N-acetylmur 93.2 0.2 4.4E-06 49.9 6.5 74 41-144 1-75 (448)
430 TIGR00551 nadB L-aspartate oxi 93.2 0.12 2.7E-06 52.1 5.0 56 151-208 332-388 (488)
431 TIGR01087 murD UDP-N-acetylmur 93.2 0.28 6.1E-06 48.6 7.5 78 41-144 1-79 (433)
432 TIGR02354 thiF_fam2 thiamine b 93.1 0.18 3.9E-06 44.7 5.3 34 38-71 20-54 (200)
433 PRK13339 malate:quinone oxidor 93.1 0.12 2.7E-06 52.1 4.8 32 39-70 6-39 (497)
434 PTZ00363 rab-GDP dissociation 93.0 0.49 1.1E-05 47.2 8.8 61 80-140 231-291 (443)
435 PF02254 TrkA_N: TrkA-N domain 92.8 0.17 3.7E-06 40.1 4.4 72 42-137 1-72 (116)
436 PRK12842 putative succinate de 92.8 0.14 3.1E-06 52.8 4.9 35 39-73 9-43 (574)
437 PRK06129 3-hydroxyacyl-CoA deh 92.8 0.13 2.9E-06 48.6 4.3 35 40-74 3-37 (308)
438 PTZ00363 rab-GDP dissociation 92.8 0.13 2.9E-06 51.2 4.4 38 40-77 5-42 (443)
439 PRK08401 L-aspartate oxidase; 92.7 0.16 3.5E-06 51.0 4.9 55 151-207 309-364 (466)
440 COG2907 Predicted NAD/FAD-bind 92.6 0.12 2.6E-06 49.2 3.6 38 38-76 7-44 (447)
441 PRK09620 hypothetical protein; 92.5 0.5 1.1E-05 42.8 7.4 34 38-71 2-52 (229)
442 COG0569 TrkA K+ transport syst 92.5 0.17 3.7E-06 45.7 4.4 34 40-73 1-34 (225)
443 PF13478 XdhC_C: XdhC Rossmann 92.5 0.15 3.2E-06 42.3 3.6 35 42-76 1-35 (136)
444 PRK07530 3-hydroxybutyryl-CoA 92.4 0.16 3.5E-06 47.6 4.3 35 39-73 4-38 (292)
445 cd00401 AdoHcyase S-adenosyl-L 92.3 0.2 4.3E-06 49.4 4.9 35 38-72 201-235 (413)
446 PF00670 AdoHcyase_NAD: S-aden 92.3 0.19 4E-06 42.9 4.0 35 38-72 22-56 (162)
447 PLN02976 amine oxidase 92.2 0.21 4.5E-06 56.0 5.4 40 38-77 692-731 (1713)
448 PRK05808 3-hydroxybutyryl-CoA 92.2 0.21 4.6E-06 46.5 4.9 36 40-75 4-39 (282)
449 TIGR02061 aprA adenosine phosp 92.2 0.15 3.3E-06 52.9 4.2 40 159-206 400-439 (614)
450 KOG3855 Monooxygenase involved 92.2 1.1 2.4E-05 43.7 9.6 48 93-140 165-218 (481)
451 TIGR02853 spore_dpaA dipicolin 92.2 0.47 1E-05 44.5 7.1 56 17-72 124-184 (287)
452 PRK14573 bifunctional D-alanyl 92.1 0.33 7.1E-06 52.3 6.7 76 39-144 4-80 (809)
453 TIGR01811 sdhA_Bsu succinate d 92.0 0.2 4.3E-06 52.1 4.7 51 153-206 371-422 (603)
454 PRK08641 sdhA succinate dehydr 92.0 0.19 4.2E-06 51.9 4.7 54 151-207 354-408 (589)
455 PRK05329 anaerobic glycerol-3- 92.0 0.22 4.7E-06 49.3 4.8 32 40-71 3-34 (422)
456 KOG2844 Dimethylglycine dehydr 92.0 1 2.2E-05 46.5 9.5 53 85-139 191-243 (856)
457 PRK03803 murD UDP-N-acetylmura 91.9 0.55 1.2E-05 46.8 7.7 79 38-145 5-86 (448)
458 PF01262 AlaDh_PNT_C: Alanine 91.9 0.27 5.9E-06 42.1 4.8 34 38-71 19-52 (168)
459 PF02826 2-Hacid_dh_C: D-isome 91.9 0.3 6.5E-06 42.3 5.1 36 38-73 35-70 (178)
460 TIGR03197 MnmC_Cterm tRNA U-34 91.9 0.4 8.8E-06 46.5 6.6 55 81-138 135-189 (381)
461 PRK06035 3-hydroxyacyl-CoA deh 91.9 0.19 4.1E-06 47.1 4.1 34 40-73 4-37 (291)
462 PRK07843 3-ketosteroid-delta-1 91.8 0.23 4.9E-06 51.1 4.9 35 40-74 8-42 (557)
463 TIGR01812 sdhA_frdA_Gneg succi 91.8 0.21 4.6E-06 51.4 4.7 56 81-137 129-189 (566)
464 TIGR02733 desat_CrtD C-3',4' d 91.8 0.62 1.3E-05 46.9 8.0 57 81-138 232-293 (492)
465 COG0686 Ald Alanine dehydrogen 91.8 0.13 2.8E-06 48.1 2.7 36 38-73 167-202 (371)
466 cd01078 NAD_bind_H4MPT_DH NADP 91.8 0.49 1.1E-05 41.4 6.3 35 37-71 26-61 (194)
467 KOG0405 Pyridine nucleotide-di 91.7 1.7 3.8E-05 41.5 10.0 98 40-142 21-168 (478)
468 cd01483 E1_enzyme_family Super 91.7 0.53 1.1E-05 39.0 6.2 31 41-71 1-32 (143)
469 PRK07512 L-aspartate oxidase; 91.7 0.22 4.9E-06 50.6 4.6 55 152-208 341-396 (513)
470 TIGR02356 adenyl_thiF thiazole 91.6 0.46 1E-05 42.1 6.1 34 38-71 20-54 (202)
471 KOG1335 Dihydrolipoamide dehyd 91.6 1.8 3.9E-05 42.0 10.2 37 38-74 38-74 (506)
472 PLN02545 3-hydroxybutyryl-CoA 91.5 0.23 5E-06 46.6 4.3 36 39-74 4-39 (295)
473 TIGR02437 FadB fatty oxidation 91.4 0.22 4.7E-06 52.8 4.3 38 39-76 313-350 (714)
474 PRK11730 fadB multifunctional 91.4 0.22 4.7E-06 52.8 4.3 37 40-76 314-350 (715)
475 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.4 0.24 5.1E-06 50.3 4.4 39 38-76 4-42 (503)
476 PRK14175 bifunctional 5,10-met 91.3 1 2.2E-05 42.2 8.2 51 21-71 139-191 (286)
477 COG1004 Ugd Predicted UDP-gluc 91.3 0.47 1E-05 46.0 6.0 50 41-90 2-58 (414)
478 TIGR02964 xanthine_xdhC xanthi 91.2 0.36 7.8E-06 44.2 5.1 39 38-76 99-137 (246)
479 PRK06175 L-aspartate oxidase; 91.2 0.3 6.5E-06 48.6 4.9 54 151-207 330-385 (433)
480 PRK06452 sdhA succinate dehydr 91.2 0.3 6.6E-06 50.3 5.1 55 151-207 345-401 (566)
481 PRK06522 2-dehydropantoate 2-r 91.1 0.27 5.9E-06 46.0 4.4 31 41-71 2-32 (304)
482 PRK09496 trkA potassium transp 91.1 0.63 1.4E-05 46.2 7.2 56 17-72 207-264 (453)
483 PRK06849 hypothetical protein; 91.1 0.7 1.5E-05 45.1 7.3 64 38-101 3-82 (389)
484 COG2509 Uncharacterized FAD-de 91.1 0.2 4.3E-06 49.3 3.3 44 154-207 438-481 (486)
485 TIGR00936 ahcY adenosylhomocys 91.1 0.32 7E-06 47.7 4.8 35 38-72 194-228 (406)
486 PRK08268 3-hydroxy-acyl-CoA de 90.9 0.26 5.7E-06 50.0 4.2 39 39-77 7-45 (507)
487 COG0029 NadB Aspartate oxidase 90.9 0.34 7.3E-06 48.2 4.7 57 151-209 340-397 (518)
488 cd01065 NAD_bind_Shikimate_DH 90.8 0.52 1.1E-05 39.3 5.4 35 38-72 18-53 (155)
489 TIGR02441 fa_ox_alpha_mit fatt 90.8 0.25 5.5E-06 52.4 4.2 38 40-77 336-373 (737)
490 COG1648 CysG Siroheme synthase 90.8 0.39 8.4E-06 42.9 4.7 34 38-71 11-44 (210)
491 PRK07573 sdhA succinate dehydr 90.8 0.3 6.5E-06 51.1 4.6 50 152-204 406-456 (640)
492 TIGR00518 alaDH alanine dehydr 90.7 0.33 7.1E-06 47.3 4.5 35 38-72 166-200 (370)
493 PRK07523 gluconate 5-dehydroge 90.7 1.2 2.5E-05 40.4 7.9 34 38-71 9-43 (255)
494 PLN02815 L-aspartate oxidase 90.6 0.33 7.1E-06 50.3 4.7 54 152-207 377-431 (594)
495 cd01075 NAD_bind_Leu_Phe_Val_D 90.6 0.45 9.7E-06 42.1 5.0 35 37-71 26-60 (200)
496 PRK02106 choline dehydrogenase 90.6 0.31 6.7E-06 50.1 4.5 33 41-73 7-40 (560)
497 TIGR02462 pyranose_ox pyranose 90.6 0.35 7.6E-06 49.4 4.8 34 41-74 2-35 (544)
498 COG1233 Phytoene dehydrogenase 90.6 0.71 1.5E-05 46.6 7.0 56 81-137 224-279 (487)
499 PRK07233 hypothetical protein; 90.6 1 2.2E-05 44.1 8.0 55 81-137 198-252 (434)
500 PF13460 NAD_binding_10: NADH( 90.6 0.41 9E-06 40.9 4.7 32 42-73 1-33 (183)
No 1
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=1e-41 Score=337.29 Aligned_cols=294 Identities=17% Similarity=0.291 Sum_probs=242.2
Q ss_pred CCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHH
Q 018416 11 SGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEY 90 (356)
Q Consensus 11 pG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~ 90 (356)
|+.+.++++++++++++..+++++....+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++.+.+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~-~d~~~~~~l~~~ 198 (438)
T PRK13512 120 LGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDE 198 (438)
T ss_pred CCCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchh-cCHHHHHHHHHH
Confidence 4444578999999999999998887656899999999999999999999999999999999998886 899999999999
Q ss_pred HHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEecccccCCCCE
Q 018416 91 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSV 168 (356)
Q Consensus 91 l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l~ts~~~V 168 (356)
|+++||++++++++++++. ..+++++|+++++|.|++++|++||+++++.. +.. ++|+|.||++|||+.|+|
T Consensus 199 l~~~gI~i~~~~~v~~i~~------~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~I 272 (438)
T PRK13512 199 LDKREIPYRLNEEIDAING------NEVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNI 272 (438)
T ss_pred HHhcCCEEEECCeEEEEeC------CEEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCE
Confidence 9999999999999999963 14667788899999999999999999987655 555 568899999999999999
Q ss_pred EEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCC-CCCCeEEEEecCceEEEeecccceEEEEc----
Q 018416 169 YAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEVVHYG---- 243 (356)
Q Consensus 169 yAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~~~~g---- 243 (356)
||+|||+..+....+.+...+++..|.+||+.+++||+|... ..+ +..+..+..++++.++++|+++.++...+
T Consensus 273 yA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~-~~~~~~~~~~~~~~~~~~ia~vGlte~~a~~~~~~~~ 351 (438)
T PRK13512 273 YAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDT-IEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMV 351 (438)
T ss_pred EEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCc-cccCCcccceEEEEcCceEEeecCCHHHHccCCcEEE
Confidence 999999986544445554556777899999999999998542 222 44556677889999999999886543221
Q ss_pred ---c--------CCCCceEEEEe--eCCeEEEEEEeCCC-HH-HHHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCCCC
Q 018416 244 ---N--------FSGTTFGAYWV--NKGRLVGSFLEGGT-KE-EYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPL 308 (356)
Q Consensus 244 ---~--------~~~~~~~~~~~--~~g~ilGa~~vg~~-~~-~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~ 308 (356)
. ....+|.++.. ++++|||+|++|++ +. .++.++.+|++++|++||.+++ +.|+|+|++..+
T Consensus 352 ~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~~P~~~~~~~ 428 (438)
T PRK13512 352 EVTQGAHANYYPGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE---VAYAPPYSHPKD 428 (438)
T ss_pred EEecCCcCCCcCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcc---cccCCCCCcccc
Confidence 0 01123666554 58999999999986 55 4678999999999999999988 999999999887
Q ss_pred CCCcccc
Q 018416 309 PSTPVDG 315 (356)
Q Consensus 309 ~~~~~~~ 315 (356)
+.+..++
T Consensus 429 ~~~~~~~ 435 (438)
T PRK13512 429 LINMIGY 435 (438)
T ss_pred HHHHHHH
Confidence 7666553
No 2
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=1.3e-41 Score=337.29 Aligned_cols=304 Identities=20% Similarity=0.235 Sum_probs=250.8
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+.++++++++++++.++++.+....+++++|||+|++|+|+|..|++.|.+|+++++.+++++..+++++
T Consensus 114 ~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~ 193 (444)
T PRK09564 114 RPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEI 193 (444)
T ss_pred CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHH
Confidence 57778999998889999999999999999887656899999999999999999999999999999999998885589999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEeccc
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL 161 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l 161 (356)
.+.+++.|+++||++++++++++++. ++.+..+.+ ++.++++|.+++|+|++|++++++.. +.. ++|+|.||+++
T Consensus 194 ~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~ 270 (444)
T PRK09564 194 TDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVT-DKGEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYG 270 (444)
T ss_pred HHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCc
Confidence 99999999999999999999999964 344444544 45579999999999999999887755 665 56889999999
Q ss_pred ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEE
Q 018416 162 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVH 241 (356)
Q Consensus 162 ~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~ 241 (356)
||+.|+|||+|||+..+....+.+.+.+++..|.+||+.+|+||+|.... .....+.....++++.++++|.++.++..
T Consensus 271 ~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~-~~~~~~~~~~~~~~~~~a~vG~t~~~a~~ 349 (444)
T PRK09564 271 ETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVS-FKGTLGSACIKVLDLEAARTGLTEEEAKK 349 (444)
T ss_pred ccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCC-CCCcccceEEEECCEEEEEecCCHHHHHH
Confidence 99999999999999987766666666788999999999999999986532 22334444556889999999998764421
Q ss_pred Ec---------cCC--------CCceEEEEe--eCCeEEEEEEeCCC-H-HHHHHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 018416 242 YG---------NFS--------GTTFGAYWV--NKGRLVGSFLEGGT-K-EEYEAIAKATRLQPVVEDLAELETQGLGFA 300 (356)
Q Consensus 242 ~g---------~~~--------~~~~~~~~~--~~g~ilGa~~vg~~-~-~~~~~~a~ai~~~~~~~dl~~l~~~~~~ya 300 (356)
.| ... ..+|.++.. ++++|+|+|++|+. + +.++.++.+|++++|++||.+++ ..|+
T Consensus 350 ~g~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~---~~~~ 426 (444)
T PRK09564 350 LGIDYKTVFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMD---FCYA 426 (444)
T ss_pred CCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcc---cccC
Confidence 11 111 123666554 68999999999985 5 44678899999999999999988 9999
Q ss_pred cCcCCCCCCCCccc
Q 018416 301 LAVSQKPLPSTPVD 314 (356)
Q Consensus 301 p~~~~~~~~~~~~~ 314 (356)
|+|+++.++.+..+
T Consensus 427 p~~~~~~~~~~~~~ 440 (444)
T PRK09564 427 PPFARTWDALNVAG 440 (444)
T ss_pred CCCCCCcCHHHHHH
Confidence 99999988766554
No 3
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=2.8e-41 Score=333.28 Aligned_cols=299 Identities=25% Similarity=0.321 Sum_probs=249.1
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+.++++++++++++.++++.++...+++++|||+|++|+|+|..|++.|.+||++++.++++.+.+++++
T Consensus 102 ~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~ 181 (427)
T TIGR03385 102 SPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEM 181 (427)
T ss_pred CCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHH
Confidence 68888999988889999999999999999886556899999999999999999999999999999999988544489999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEeccc
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL 161 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l 161 (356)
.+.+.+.|++.||++++++.+++++. ++.+ +.+.+|+++++|.+++++|.+|++++++.. +.. .+|+|.||+++
T Consensus 182 ~~~~~~~l~~~gV~v~~~~~v~~i~~--~~~~--v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~ 257 (427)
T TIGR03385 182 NQIVEEELKKHEINLRLNEEVDSIEG--EERV--KVFTSGGVYQADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKF 257 (427)
T ss_pred HHHHHHHHHHcCCEEEeCCEEEEEec--CCCE--EEEcCCCEEEeCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCc
Confidence 99999999999999999999999975 3332 456788899999999999999999988764 655 56899999999
Q ss_pred ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCC-CCCCeEEEEecCceEEEeecccceEE
Q 018416 162 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKF-DYLPFFYSRVFTLSWQFYGDNVGEVV 240 (356)
Q Consensus 162 ~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~p~~~~~~~~~~~~~~G~~~~~~~ 240 (356)
||+.|+|||+|||+..+....+.+...+++..|.+||+.+|+||.|.. ..+ ...+...+.++++.++++|.++.++.
T Consensus 258 ~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~--~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~ 335 (427)
T TIGR03385 258 QTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGND--IEFKGVLGTNITKFFDLTIASTGVTENEAK 335 (427)
T ss_pred EeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCCC--CCCCCcceeeEEEEcCeEEEEecCCHHHHH
Confidence 999999999999999877666665556788999999999999999864 334 33455667889999999998775322
Q ss_pred EEc---------cCC--------CCceEEEEe--eCCeEEEEEEeCCC-HHH-HHHHHHHHHcCCCcCcHHHHhhcCCCc
Q 018416 241 HYG---------NFS--------GTTFGAYWV--NKGRLVGSFLEGGT-KEE-YEAIAKATRLQPVVEDLAELETQGLGF 299 (356)
Q Consensus 241 ~~g---------~~~--------~~~~~~~~~--~~g~ilGa~~vg~~-~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y 299 (356)
..| ... ..+|.++.. ++++|+|+|++|+. +.+ ++.++.||++++|++||.+++ +.|
T Consensus 336 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~~ 412 (427)
T TIGR03385 336 KLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFE---LAY 412 (427)
T ss_pred HCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcc---ccc
Confidence 111 111 123666655 57999999999988 655 578899999999999999988 999
Q ss_pred ccCcCCCCCCCC
Q 018416 300 ALAVSQKPLPST 311 (356)
Q Consensus 300 ap~~~~~~~~~~ 311 (356)
+|+|.+..++.+
T Consensus 413 ~p~~~~~~~~~~ 424 (427)
T TIGR03385 413 APPYSRVWDPLN 424 (427)
T ss_pred CCCCCCccchHH
Confidence 999998865544
No 4
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=9.1e-40 Score=319.49 Aligned_cols=281 Identities=27% Similarity=0.355 Sum_probs=239.4
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++++.+.++++++++++|+.++++.+. .+++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++
T Consensus 111 ~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~--~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~ 188 (396)
T PRK09754 111 AARPLPLLDALGERCFTLRHAGDAARLREVLQ--PERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPV 188 (396)
T ss_pred CCCCCCCCCcCCCCEEecCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHH
Confidence 46677888877789999999999999998876 5799999999999999999999999999999999999987679999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ 162 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~ 162 (356)
.+.+.+.++++||++++++++++++. ++. ..+++.+|+++++|.|++++|.+||+.+++.. +.. +++|.||++||
T Consensus 189 ~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~-~~gi~vd~~~~ 264 (396)
T PRK09754 189 QRYLLQRHQQAGVRILLNNAIEHVVD--GEK-VELTLQSGETLQADVVIYGIGISANDQLAREANLDT-ANGIVIDEACR 264 (396)
T ss_pred HHHHHHHHHHCCCEEEeCCeeEEEEc--CCE-EEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCc-CCCEEECCCCc
Confidence 99999999999999999999999974 222 35778899999999999999999999887644 443 46799999999
Q ss_pred cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce-EEE
Q 018416 163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE-VVH 241 (356)
Q Consensus 163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~-~~~ 241 (356)
|++|+|||+|||+..+.+ +|...+.++|..|.+||++||.||+|.. ..+..+|++|+++|+++++++|....+ ...
T Consensus 265 ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~~aa~ni~g~~--~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~ 341 (396)
T PRK09754 265 TCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQIAAAAMLGLP--LPLLPPPWFWSDQYSDNLQFIGDMRGDDWLC 341 (396)
T ss_pred cCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHHHHHHHhcCCC--CCCCCCCceEEEeCCccEEEeeCCCCCEEEE
Confidence 999999999999988776 7777788999999999999999999875 467789999999999999999965543 345
Q ss_pred EccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhc
Q 018416 242 YGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 295 (356)
Q Consensus 242 ~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~ 295 (356)
.++.++..|..++.++|+|+|+.++|. ..+...+..+|+.+.++ +...|.++
T Consensus 342 ~~~~~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~ 393 (396)
T PRK09754 342 RGNPETQKAIWFNLQNGVLIGAVTLNQ-GREIRPIRKWIQSGKTF-DAKLLIDE 393 (396)
T ss_pred ecCCCCceEEEEEeeCCEEEEEEEECC-HHHHHHHHHHHHCCCCC-CHHHhcCc
Confidence 555554457777778999999999995 56677778889988876 45555533
No 5
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=1.2e-40 Score=326.32 Aligned_cols=276 Identities=25% Similarity=0.323 Sum_probs=221.8
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|..+++||.+...+++-++. ..+. .-|++++|||||+||+|+|..++++|.+||++++.+++++. +|+++
T Consensus 146 ~p~~~~~~~~~~~~~~~s~~~---l~~~-----~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei 216 (454)
T COG1249 146 RPRIPPGPGIDGARILDSSDA---LFLL-----ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEI 216 (454)
T ss_pred CCcCCCCCCCCCCeEEechhh---cccc-----cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHH
Confidence 588888888876666643332 2111 15899999999999999999999999999999999999997 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCch---hhhccccc-ccCcEEE
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS---LFEGQLTL-EKGGIKV 157 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~---l~~~~l~~-~~g~I~v 157 (356)
++.+.+.|++.|+++++++.+++++.++++ ..+.+++|+ ++++|.+++|+|++||++ |.+.+++. ++|+|.|
T Consensus 217 ~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~V 294 (454)
T COG1249 217 SKELTKQLEKGGVKILLNTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKV 294 (454)
T ss_pred HHHHHHHHHhCCeEEEccceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEe
Confidence 999999999999999999999999874444 567777776 799999999999999998 33445777 5689999
Q ss_pred ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC-CCCCCCCCCCCeEEEEecCceEEEeeccc
Q 018416 158 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME-PDKTDKFDYLPFFYSRVFTLSWQFYGDNV 236 (356)
Q Consensus 158 d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~~~~~~G~~~ 236 (356)
|++++|++|+|||+|||+..+. +...|..||++|++||++ .....++..+|+.++ .+..++++|+++
T Consensus 295 D~~~~Tnvp~IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~if--t~Peia~VGlte 362 (454)
T COG1249 295 DDQMTTNVPGIYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVF--TDPEIASVGLTE 362 (454)
T ss_pred CCccccCCCCEEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEE--CCCcceeeeCCH
Confidence 9888889999999999988763 467899999999999997 332346788997665 456679999988
Q ss_pred ceEEEEc--------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHhhc
Q 018416 237 GEVVHYG--------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELETQ 295 (356)
Q Consensus 237 ~~~~~~g--------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~~~ 295 (356)
.++...+ . .+..+|.|+.. ++++|||+|++|+++.++ ..++.||++++|++|+....
T Consensus 363 ~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i-- 440 (454)
T COG1249 363 EEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTI-- 440 (454)
T ss_pred HHHHhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCC--
Confidence 6543221 0 11234766654 579999999999998876 56799999999999887766
Q ss_pred CCCcccCcCCC
Q 018416 296 GLGFALAVSQK 306 (356)
Q Consensus 296 ~~~yap~~~~~ 306 (356)
..+|++++.
T Consensus 441 --~~HPT~sE~ 449 (454)
T COG1249 441 --HAHPTLSEA 449 (454)
T ss_pred --CCCCChHHH
Confidence 566776654
No 6
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=314.58 Aligned_cols=293 Identities=51% Similarity=0.882 Sum_probs=268.5
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
.|+.+++||.+.++++++|+++|+..+...+. ..++||++|+|++|+|+|..|...+.+||+|++.+.++++.+.+++
T Consensus 180 ~~~~l~~pG~~~~nv~~ireieda~~l~~~~~--~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i 257 (478)
T KOG1336|consen 180 SAKTLDIPGVELKNVFYLREIEDANRLVAAIQ--LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSI 257 (478)
T ss_pred ccccCCCCCccccceeeeccHHHHHHHHHHhc--cCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHH
Confidence 57899999999999999999999999988886 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhccccc-ccCcEEEecccc
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVTGRLQ 162 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I~vd~~l~ 162 (356)
++.++++|+++||++++++.+.+++.+++|++..|.+.||+++++|+|++++|.+||+.+++.+..+ .+|+|.||+++|
T Consensus 258 ~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~~f~ 337 (478)
T KOG1336|consen 258 GQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDEFFQ 337 (478)
T ss_pred HHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccccccceecccCCEeehhcee
Confidence 9999999999999999999999999988899999999999999999999999999999998855333 789999999999
Q ss_pred cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE
Q 018416 163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY 242 (356)
Q Consensus 163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~ 242 (356)
|++|+|||+|||+..+...++..+++.|++.|+.+|+.+...+...... .+.++|+|++.+|++.|.+.|.+.++.+.+
T Consensus 338 t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~-~~~~lPyf~t~~f~~~~~~~G~g~~~~v~~ 416 (478)
T KOG1336|consen 338 TSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQD-AYDYLPYFYTRFFSLSWRFAGDGVGDVVLF 416 (478)
T ss_pred eccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCcc-cccccchHHHHHhhhhccccCcCccceeee
Confidence 9999999999999999988887777999999999999887777655442 377999999999999999999999999999
Q ss_pred ccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCCCcc
Q 018416 243 GNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFA 300 (356)
Q Consensus 243 g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~ya 300 (356)
|+.+...|+.+|.+ +..+++.+-+..+++.+.++.+++.+..++.+..+...+..|+
T Consensus 417 G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~~~~a~l~~~~~~v~~~~~~~~~~~~~~ 473 (478)
T KOG1336|consen 417 GDLEPGSFGAYWIK-GDKVGAVAEGGRDEEVSQFAKLARQGPEVTSLKLLSKSGDSFW 473 (478)
T ss_pred cccccccceeeEee-ccEEEEEeccCCChHHHHHHHHHhcCCcchhhhhccccchhhH
Confidence 98877779999999 9999999999888889999999999999998888776666554
No 7
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=100.00 E-value=2e-37 Score=325.58 Aligned_cols=310 Identities=19% Similarity=0.227 Sum_probs=242.8
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|..+++||.+.+++|++++++|+.++++.+. .+++++|||||++|+|+|..|+++|.+||++++.+++++..+|+++
T Consensus 112 ~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~--~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~ 189 (847)
T PRK14989 112 YPWIPPIKGSETQDCFVYRTIEDLNAIEACAR--RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMG 189 (847)
T ss_pred CcCCCCCCCCCCCCeEEECCHHHHHHHHHHHh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHH
Confidence 57788999999899999999999999988876 5789999999999999999999999999999999999987799999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEeccc
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRL 161 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l 161 (356)
++.+++.|+++||++++++.++++..++++....+.+++|+++++|+|++++|++||+++++.. +.. ++|+|.||++|
T Consensus 190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l 269 (847)
T PRK14989 190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSC 269 (847)
T ss_pred HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCC
Confidence 9999999999999999999999997533344567888999999999999999999999987654 665 67899999999
Q ss_pred ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce---
Q 018416 162 QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE--- 238 (356)
Q Consensus 162 ~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~--- 238 (356)
|||+|+|||+|||+......+ .++..|.+||+.||+||+|.... ..........+++++.++++|...+.
T Consensus 270 ~Ts~p~IYAiGD~a~~~~~~~------gl~~~a~~~a~vaa~~i~g~~~~-~~g~~~~~~lk~~G~~v~s~G~~~~~~~~ 342 (847)
T PRK14989 270 QTSDPDIYAIGECASWNNRVF------GLVAPGYKMAQVAVDHLLGSENA-FEGADLSAKLKLLGVDVGGIGDAHGRTPG 342 (847)
T ss_pred cCCCCCEEEeecceeEcCccc------ccHHHHHHHHHHHHHHhcCCCcC-CCCcccceEEEECCcceEecccccCCCCC
Confidence 999999999999999865433 46789999999999999987632 22223345678889999988854332
Q ss_pred --EEEEccCCCCceEEEEe--eCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCc-HHHHhhcCCC--cccCcCCCCCCCC
Q 018416 239 --VVHYGNFSGTTFGAYWV--NKGRLVGSFLEGGTKEEYEAIAKATRLQPVVED-LAELETQGLG--FALAVSQKPLPST 311 (356)
Q Consensus 239 --~~~~g~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~d-l~~l~~~~~~--yap~~~~~~~~~~ 311 (356)
...+.+.....|.++.+ ++++|+|++++|+.. ....+...+..+.++++ ...|..+... -+|..+....|..
T Consensus 343 ~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~-~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~d~ 421 (847)
T PRK14989 343 ARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTS-DYGNLLQLVLNAIELPENPDSLILPAHAGSGKPSIGVDKLPDS 421 (847)
T ss_pred ceeEEEEcCCCCEEEEEEEECCCCEEEEEEEECCHH-HHHHHHHHHHcCCCCccchhheecCCCCCCCCCccccccCCCC
Confidence 23333333345888766 467999999999644 34444455566777654 3333321111 1244555678888
Q ss_pred cccccccccccc
Q 018416 312 PVDGKTVPGLVL 323 (356)
Q Consensus 312 ~~~~~~~n~~~~ 323 (356)
..+|.|.|+-.+
T Consensus 422 a~iC~C~~Vt~~ 433 (847)
T PRK14989 422 AQICSCFDVTKG 433 (847)
T ss_pred CEEEEeecccHH
Confidence 899985555444
No 8
>PRK07846 mycothione reductase; Reviewed
Probab=100.00 E-value=1.4e-37 Score=308.61 Aligned_cols=276 Identities=20% Similarity=0.269 Sum_probs=218.6
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+...+ .+.+++..+.. .+++++|||+|++|+|+|..|+++|.+||++++++++++. +|+++
T Consensus 139 ~p~~p~i~g~~~~~~---~~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~ 209 (451)
T PRK07846 139 RPVIPPVIADSGVRY---HTSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRH-LDDDI 209 (451)
T ss_pred CCCCCCCCCcCCccE---EchHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHH
Confidence 688889999764433 34555554432 4789999999999999999999999999999999999986 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh---ccccc-ccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~l~~-~~g~I~vd~ 159 (356)
.+.+.+.+ +.||++++++++++++.+ ++. ..+.+.+|+++++|.|++++|++||++++. .++.. ++|+|.||+
T Consensus 210 ~~~l~~l~-~~~v~i~~~~~v~~i~~~-~~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~ 286 (451)
T PRK07846 210 SERFTELA-SKRWDVRLGRNVVGVSQD-GSG-VTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE 286 (451)
T ss_pred HHHHHHHH-hcCeEEEeCCEEEEEEEc-CCE-EEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECC
Confidence 98887655 568999999999999863 333 346777888999999999999999999753 23665 678899999
Q ss_pred ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccc
Q 018416 160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVG 237 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~ 237 (356)
++||+.|+|||+|||+..+ ++...|.+||+.+++||++... ..++..+|+.++ .++.++++|+++.
T Consensus 287 ~~~Ts~p~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if--~~p~ia~vGlte~ 354 (451)
T PRK07846 287 YQRTSAEGVFALGDVSSPY----------QLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVF--THPQIASVGLTEN 354 (451)
T ss_pred CcccCCCCEEEEeecCCCc----------cChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEE--CCCCcEeEeCCHH
Confidence 9999999999999999754 3567899999999999997632 245667887644 4678999999886
Q ss_pred eEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416 238 EVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 296 (356)
Q Consensus 238 ~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 296 (356)
++...| + .+..+|.++.. ++++|||+|++|+++.+ ++.++.||++++|++||.+..
T Consensus 355 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~--- 431 (451)
T PRK07846 355 EARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQ--- 431 (451)
T ss_pred HHHhcCCCEEEEEEecCcchhhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCC---
Confidence 543211 1 11124666554 58999999999988655 578899999999999998876
Q ss_pred CCcccCcCCC
Q 018416 297 LGFALAVSQK 306 (356)
Q Consensus 297 ~~yap~~~~~ 306 (356)
+.++|++++.
T Consensus 432 ~~~hPt~~e~ 441 (451)
T PRK07846 432 YWIHPALPEV 441 (451)
T ss_pred CccCCcHHHH
Confidence 5678888765
No 9
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=100.00 E-value=1.5e-36 Score=318.78 Aligned_cols=309 Identities=19% Similarity=0.256 Sum_probs=246.4
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+.++++++++++|+.++++.+. .+++++|||||++|+|+|..|+++|.+||++++.++++++.+|+++
T Consensus 107 ~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~~~--~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~ 184 (785)
T TIGR02374 107 YPFILPIPGADKKGVYVFRTIEDLDAIMAMAQ--RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTA 184 (785)
T ss_pred CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHH
Confidence 57888999999999999999999999998876 5789999999999999999999999999999999999987799999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ 162 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~ 162 (356)
+..+.+.|+++||++++++.++++.. ++.+..++++||+++++|+||+++|.+||+.+++.. +... ++|.||++||
T Consensus 185 ~~~l~~~l~~~GV~v~~~~~v~~i~~--~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~ 261 (785)
T TIGR02374 185 GRLLQRELEQKGLTFLLEKDTVEIVG--ATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQ 261 (785)
T ss_pred HHHHHHHHHHcCCEEEeCCceEEEEc--CCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcc
Confidence 99999999999999999999999974 445567889999999999999999999999988654 5444 7899999999
Q ss_pred cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc----e
Q 018416 163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG----E 238 (356)
Q Consensus 163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~----~ 238 (356)
|++|+|||+|||+..+...+ .++.+|.+||+.+|.||+|...............+++++.++++|.... +
T Consensus 262 Ts~p~IyA~GD~a~~~~~~~------gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~~~ 335 (785)
T TIGR02374 262 TSDPDIYAVGECAEHNGRVY------GLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETERTT 335 (785)
T ss_pred cCCCCEEEeeecceeCCccc------ccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCCCcE
Confidence 99999999999999765433 3678899999999999998752223334556678899999999996532 2
Q ss_pred EEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCC--CcccCcCCCCCCCCccccc
Q 018416 239 VVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGL--GFALAVSQKPLPSTPVDGK 316 (356)
Q Consensus 239 ~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~--~yap~~~~~~~~~~~~~~~ 316 (356)
.+...+.....|.+++.++++|+|++++|. ......+..+++.+..+.+...|..+.- .-.|..+.+..|....+|.
T Consensus 336 ~~~~~d~~~~~y~kl~~~~~rLlGavlvgd-~~~~~~L~~li~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~d~~~vC~ 414 (785)
T TIGR02374 336 SIKIYDEQKGIYKKLVLSDDKLLGAVLFGD-TSDYGRLLDMVLKQADISEDPAIIKPQISGPEAGGPGVEAMPDSEQICS 414 (785)
T ss_pred EEEEEcCCCCEEEEEEEECCEEEEEEEECC-HHHHHHHHHHHHcCCCCCcChhhhcCCCCCCCCCCcccccCCCCCEEee
Confidence 233334444458888889999999999995 4567778888998887766445441110 0011122234556788887
Q ss_pred cccccccCc
Q 018416 317 TVPGLVLGK 325 (356)
Q Consensus 317 ~~n~~~~~~ 325 (356)
||.++...
T Consensus 415 -C~~Vt~~~ 422 (785)
T TIGR02374 415 -CNTVTKGA 422 (785)
T ss_pred -CCCCcHHH
Confidence 55544433
No 10
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=1.8e-37 Score=308.99 Aligned_cols=276 Identities=16% Similarity=0.222 Sum_probs=217.6
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|..+++++.+.+++++. ..+.+... .+++++|||+|++|+|+|..|+++|.+||++++++++++. +|+++
T Consensus 148 ~p~~p~~~~~~~~~v~~~------~~~~~~~~--~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~ 218 (461)
T PRK05249 148 RPYRPPDVDFDHPRIYDS------DSILSLDH--LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEI 218 (461)
T ss_pred CCCCCCCCCCCCCeEEcH------HHhhchhh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHH
Confidence 466677777666667632 23322222 4799999999999999999999999999999999999997 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd~ 159 (356)
.+.+.+.|+++||++++++++++++.++++ ..+++.+|+++++|.|++++|++||++++ + .++.. ++|+|.||+
T Consensus 219 ~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~ 296 (461)
T PRK05249 219 SDALSYHLRDSGVTIRHNEEVEKVEGGDDG--VIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNE 296 (461)
T ss_pred HHHHHHHHHHcCCEEEECCEEEEEEEeCCe--EEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCC
Confidence 999999999999999999999999863333 34667788899999999999999999853 2 23555 568899999
Q ss_pred ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018416 160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~ 239 (356)
++||+.|+|||+|||+..+ .++..|.+||+.||.+|+|......+..+|+.++..+ .++++|+++.++
T Consensus 297 ~~~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p--~ia~vG~te~~a 364 (461)
T PRK05249 297 NYQTAVPHIYAVGDVIGFP----------SLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIP--EISSVGKTEQEL 364 (461)
T ss_pred CcccCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCC--cceEecCCHHHH
Confidence 9999999999999998654 3567899999999999998654456677888765543 679999987543
Q ss_pred EEEc-----------cC-------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCC
Q 018416 240 VHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG 298 (356)
Q Consensus 240 ~~~g-----------~~-------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~ 298 (356)
...| .. +..+|.++.. ++++|||+|++|+.+.+ ++.++.||++++|++||.++. +.
T Consensus 365 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---~~ 441 (461)
T PRK05249 365 TAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTT---FN 441 (461)
T ss_pred HHcCCCeEEEEEccccccceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc---cC
Confidence 2111 11 1134666554 58999999999988665 577899999999999999888 44
Q ss_pred cccCcCCC
Q 018416 299 FALAVSQK 306 (356)
Q Consensus 299 yap~~~~~ 306 (356)
| |.+++.
T Consensus 442 ~-Pt~~e~ 448 (461)
T PRK05249 442 Y-PTMAEA 448 (461)
T ss_pred C-CCHHHH
Confidence 4 776654
No 11
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=4.7e-37 Score=306.21 Aligned_cols=276 Identities=20% Similarity=0.233 Sum_probs=217.6
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++++.+.+++++.+++.+... .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus 150 ~p~~~p~~~~~~~~v~~~~~~~~~~~--------~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~ 220 (466)
T PRK07845 150 SPRILPTAEPDGERILTWRQLYDLDE--------LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADA 220 (466)
T ss_pred CCCCCCCCCCCCceEEeehhhhcccc--------cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHH
Confidence 46656666665667887665444321 3689999999999999999999999999999999999997 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd~ 159 (356)
...+.+.|+++||++++++++++++.+++ . ..+.+.+|+++++|.|++++|++||+.++ + .++.. ++|+|.||+
T Consensus 221 ~~~l~~~L~~~gV~i~~~~~v~~v~~~~~-~-~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~ 298 (466)
T PRK07845 221 AEVLEEVFARRGMTVLKRSRAESVERTGD-G-VVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDR 298 (466)
T ss_pred HHHHHHHHHHCCcEEEcCCEEEEEEEeCC-E-EEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECC
Confidence 99999999999999999999999976333 3 34667788999999999999999999852 3 34665 568899999
Q ss_pred ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecccce
Q 018416 160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGE 238 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~ 238 (356)
++||+.|+|||+|||+..+ +++..|..||+.|+.|+++... ...+..+|+.+ +.++.++++|+++.+
T Consensus 299 ~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~v--f~~p~~a~vGlte~~ 366 (466)
T PRK07845 299 VSRTSVPGIYAAGDCTGVL----------PLASVAAMQGRIAMYHALGEAVSPLRLKTVASNV--FTRPEIATVGVSQAA 366 (466)
T ss_pred CcccCCCCEEEEeeccCCc----------cchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEE--eCCCcceeecCCHHH
Confidence 9999999999999999754 4678999999999999998642 23445566433 236789999998753
Q ss_pred EEEEc-----------cC-------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCC
Q 018416 239 VVHYG-----------NF-------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGL 297 (356)
Q Consensus 239 ~~~~g-----------~~-------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~ 297 (356)
+...+ +. ...+|.++.. ++|+|||+|++|+.+.+ ++.++.||++++|++||.++ +
T Consensus 367 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~----~ 442 (466)
T PRK07845 367 IDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQT----F 442 (466)
T ss_pred HHhCCCceEEEEEecccCchhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcC----c
Confidence 22111 10 1124666554 58999999999988665 57889999999999999884 4
Q ss_pred CcccCcCCC
Q 018416 298 GFALAVSQK 306 (356)
Q Consensus 298 ~yap~~~~~ 306 (356)
.++|++++.
T Consensus 443 ~~hPt~~e~ 451 (466)
T PRK07845 443 TVYPSLSGS 451 (466)
T ss_pred CCCCCHHHH
Confidence 788998874
No 12
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=4.6e-37 Score=306.22 Aligned_cols=278 Identities=20% Similarity=0.260 Sum_probs=215.7
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+..++++.+++.+.. ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus 144 ~p~~p~i~G~~~~~~~~~~~~~~~~--------~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~ 214 (463)
T PRK06370 144 RAAIPPIPGLDEVGYLTNETIFSLD--------ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDV 214 (463)
T ss_pred CCCCCCCCCCCcCceEcchHhhCcc--------ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHH
Confidence 6888899998877776543332211 14799999999999999999999999999999999999997 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCcEEecCeEEEecCCCCCch-h-hhc-cccc-ccCcEEEe
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIKVT 158 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G~~p~~~-l-~~~-~l~~-~~g~I~vd 158 (356)
.+.+.+.|+++||++++++++++++.++++....+... +++++++|.||+++|++||++ + ++. ++.. ++|+|.||
T Consensus 215 ~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd 294 (463)
T PRK06370 215 AAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVD 294 (463)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeEC
Confidence 99999999999999999999999986433322223333 345799999999999999998 4 333 3555 56889999
Q ss_pred cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecccc
Q 018416 159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVG 237 (356)
Q Consensus 159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~ 237 (356)
++|||+.|+|||+|||+..+ .+...|.+||+.||+||++. .....+..+|+ ..+++..++++|+++.
T Consensus 295 ~~l~t~~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~ia~vG~te~ 362 (463)
T PRK06370 295 DQLRTTNPGIYAAGDCNGRG----------AFTHTAYNDARIVAANLLDGGRRKVSDRIVPY--ATYTDPPLARVGMTEA 362 (463)
T ss_pred cCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCCCcccccCCe--EEEcCCCcEeeeCCHH
Confidence 99999999999999998754 34678999999999999976 32234445665 4467888999999876
Q ss_pred eEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416 238 EVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 296 (356)
Q Consensus 238 ~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 296 (356)
++...| + ....+|.++.. ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.
T Consensus 363 ~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~--- 439 (463)
T PRK06370 363 EARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAI--- 439 (463)
T ss_pred HHHHcCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCc---
Confidence 432211 1 11134666555 58999999999988655 578899999999999998876
Q ss_pred CCcccCcCCC
Q 018416 297 LGFALAVSQK 306 (356)
Q Consensus 297 ~~yap~~~~~ 306 (356)
..+|.+++.
T Consensus 440 -~~hPt~~e~ 448 (463)
T PRK06370 440 -HIHPTVSEL 448 (463)
T ss_pred -ccCCChHHH
Confidence 445666654
No 13
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=100.00 E-value=9.4e-37 Score=304.45 Aligned_cols=275 Identities=17% Similarity=0.257 Sum_probs=215.2
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCccCCccCC
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCMARLFT 80 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~l~~~~d 80 (356)
+|+.+++||.+ .++ +.+++..+ . ..+++++|||||++|+|+|..|..+ |.+|||+++.+++++. +|
T Consensus 162 ~p~~p~i~G~~--~~~---~~~~~~~~----~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~-~d 230 (486)
T TIGR01423 162 WPQMLGIPGIE--HCI---SSNEAFYL----D-EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRG-FD 230 (486)
T ss_pred CCCCCCCCChh--hee---chhhhhcc----c-cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccc-cC
Confidence 57888899875 343 33444332 1 2579999999999999999877665 9999999999999986 89
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh---ccccc-ccCcEE
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIK 156 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~l~~-~~g~I~ 156 (356)
+++++.+.+.|+++||++++++.+++++.++++ ...+.+.+++++++|.|++++|++||++++. .++.. ++|+|.
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~-~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~ 309 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADG-SKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQ 309 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc-eEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEe
Confidence 999999999999999999999999999864333 2456677888999999999999999998642 33555 568899
Q ss_pred EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecc
Q 018416 157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDN 235 (356)
Q Consensus 157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~ 235 (356)
||+++||+.|+|||+|||+..+ .++..|++||+.+++||++... ...+..+|+.++.. +.++++|++
T Consensus 310 Vd~~l~Ts~~~IyA~GDv~~~~----------~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~--peia~vGlt 377 (486)
T TIGR01423 310 VDEFSRTNVPNIYAIGDVTDRV----------MLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSI--PPIGTCGLV 377 (486)
T ss_pred cCCCCcCCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCC--CceEEeeCC
Confidence 9999999999999999998754 3566799999999999998542 23555688666544 468999998
Q ss_pred cceEEEEcc-----------C-----C---CCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416 236 VGEVVHYGN-----------F-----S---GTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE 293 (356)
Q Consensus 236 ~~~~~~~g~-----------~-----~---~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~ 293 (356)
+.++...++ . . ..+|.++.. ++++|||+|++|+.+.+ ++.++.||+.++|++||.++.
T Consensus 378 e~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~ 457 (486)
T TIGR01423 378 EEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTI 457 (486)
T ss_pred HHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcc
Confidence 864422110 0 0 124666554 58999999999988655 578899999999999998876
Q ss_pred hcCCCcccCcCCC
Q 018416 294 TQGLGFALAVSQK 306 (356)
Q Consensus 294 ~~~~~yap~~~~~ 306 (356)
.++|.+++.
T Consensus 458 ----~~hPt~sE~ 466 (486)
T TIGR01423 458 ----GVHPTSAEE 466 (486)
T ss_pred ----cCCCCcHHH
Confidence 567777765
No 14
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=100.00 E-value=1.2e-36 Score=301.91 Aligned_cols=275 Identities=20% Similarity=0.242 Sum_probs=213.6
Q ss_pred CCccC-CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416 4 KLEEF-GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 82 (356)
Q Consensus 4 ~p~~~-~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~ 82 (356)
+|+.+ ++||.+. .+ +.++...+ +. .+++++|||||++|+|+|..|++.|.+||++++++++++. +|++
T Consensus 140 ~p~~p~~i~g~~~--~~---~~~~~~~~----~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~-~d~~ 208 (450)
T TIGR01421 140 KPSFPENIPGAEL--GT---DSDGFFAL----EE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRS-FDSM 208 (450)
T ss_pred CCCCCCCCCCCce--eE---cHHHhhCc----cc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcc-cCHH
Confidence 56677 7888642 22 22333222 11 4789999999999999999999999999999999999987 8999
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEE
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKV 157 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~v 157 (356)
+++.+.+.|+++||++++++.+++++.++++. ..+++++| +++++|.|++++|++||++++ + .++.. ++|+|.|
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~v 287 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIV 287 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEe
Confidence 99999999999999999999999998643332 35677777 579999999999999999853 3 33555 5688999
Q ss_pred ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecc
Q 018416 158 TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDN 235 (356)
Q Consensus 158 d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~ 235 (356)
|+++||+.|+|||+|||+..+ ..+..|.+||+.+|+||++... ...+..+|+ ..++++.++++|++
T Consensus 288 d~~~~T~~p~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~--~~f~~p~ia~vGlt 355 (450)
T TIGR01421 288 DEYQNTNVPGIYALGDVVGKV----------ELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT--VVFSHPPIGTIGLT 355 (450)
T ss_pred CCCCcCCCCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHHhcCCCCCccCcccCCe--EEeCCCceEEEeCC
Confidence 999999999999999999754 3467899999999999997532 134556775 44567789999998
Q ss_pred cceEEEE-c---------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHH
Q 018416 236 VGEVVHY-G---------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAEL 292 (356)
Q Consensus 236 ~~~~~~~-g---------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l 292 (356)
+.++... + . ....+|.++.. ++|+|||+|++|+++.+ ++.++.||++++|++||.++
T Consensus 356 e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 435 (450)
T TIGR01421 356 EKEAIEKYGKENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNT 435 (450)
T ss_pred HHHHHhhcCCCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence 8654221 1 0 01123655544 58999999999988665 57789999999999999886
Q ss_pred hhcCCCcccCcCCC
Q 018416 293 ETQGLGFALAVSQK 306 (356)
Q Consensus 293 ~~~~~~yap~~~~~ 306 (356)
. ..+|.+++.
T Consensus 436 ~----~~hPt~~e~ 445 (450)
T TIGR01421 436 V----AIHPTSSEE 445 (450)
T ss_pred c----cCCCChHHH
Confidence 5 567777764
No 15
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=9.5e-37 Score=302.79 Aligned_cols=276 Identities=21% Similarity=0.282 Sum_probs=216.3
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|..+++++.+ ++ .+.+.+++.++.+ .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus 142 ~p~~p~~~~~~--~~-~~~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~ 212 (452)
T TIGR03452 142 RPYIPPAIADS--GV-RYHTNEDIMRLPE-----LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDI 212 (452)
T ss_pred CCCCCCCCCCC--CC-EEEcHHHHHhhhh-----cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHH
Confidence 35544433322 33 3456777776643 3789999999999999999999999999999999998886 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh---ccccc-ccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~l~~-~~g~I~vd~ 159 (356)
.+.+.+.+ +.||++++++++++++.++ +. ..+++.+|+++++|.+++++|++||++++. .++.. ++|+|.||+
T Consensus 213 ~~~l~~~~-~~gI~i~~~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~ 289 (452)
T TIGR03452 213 SDRFTEIA-KKKWDIRLGRNVTAVEQDG-DG-VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE 289 (452)
T ss_pred HHHHHHHH-hcCCEEEeCCEEEEEEEcC-Ce-EEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCC
Confidence 99888755 4689999999999998633 33 346677888999999999999999998753 23565 568899999
Q ss_pred ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccc
Q 018416 160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVG 237 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~ 237 (356)
+|||+.|+|||+|||+..+ ++...|.+||+++|+||++... ...+..+|+.+ ++++.++++|+++.
T Consensus 290 ~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i--~t~p~ia~vGlte~ 357 (452)
T TIGR03452 290 YGRTSARGVWALGDVSSPY----------QLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAV--FTHPQIATVGLTEQ 357 (452)
T ss_pred CcccCCCCEEEeecccCcc----------cChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEE--ECCCCeeeeeCCHH
Confidence 9999999999999999754 3566899999999999998642 34566788764 37888999999886
Q ss_pred eEEEEc--------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416 238 EVVHYG--------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 296 (356)
Q Consensus 238 ~~~~~g--------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 296 (356)
++...| . .+..+|.++.. ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus 358 ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~--- 434 (452)
T TIGR03452 358 EAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQ--- 434 (452)
T ss_pred HHHhcCCCeEEEEecCCchhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCC---
Confidence 542211 0 11234666554 68999999999988765 577899999999999998876
Q ss_pred CCcccCcCCC
Q 018416 297 LGFALAVSQK 306 (356)
Q Consensus 297 ~~yap~~~~~ 306 (356)
+.++|.+++.
T Consensus 435 ~~~hPt~~e~ 444 (452)
T TIGR03452 435 YWIHPALPEV 444 (452)
T ss_pred cccCCchHHH
Confidence 6678888764
No 16
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=9.8e-37 Score=304.17 Aligned_cols=274 Identities=18% Similarity=0.224 Sum_probs=213.5
Q ss_pred CCccC-CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416 4 KLEEF-GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 82 (356)
Q Consensus 4 ~p~~~-~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~ 82 (356)
+|..+ .+|+ +.++++ +..++..++ ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|++
T Consensus 147 ~p~~~p~~~~-~~~~v~---~~~~~~~~~-----~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~ 216 (471)
T PRK06467 147 RPIQLPFIPH-DDPRIW---DSTDALELK-----EVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKD 216 (471)
T ss_pred CCCCCCCCCC-CCCcEE---ChHHhhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHH
Confidence 35433 3444 345555 334444432 14799999999999999999999999999999999999997 8999
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC--C--cEEecCeEEEecCCCCCchhh--h-ccccc-ccCc
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGG 154 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~--g--~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~ 154 (356)
+++.+.+.|+++ |++++++.+++++.++++ ..+++.+ + +++++|.|++++|++||++++ + .++.. ++|+
T Consensus 217 ~~~~~~~~l~~~-v~i~~~~~v~~i~~~~~~--~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~ 293 (471)
T PRK06467 217 IVKVFTKRIKKQ-FNIMLETKVTAVEAKEDG--IYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGF 293 (471)
T ss_pred HHHHHHHHHhhc-eEEEcCCEEEEEEEcCCE--EEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCc
Confidence 999999999998 999999999999864333 2344433 2 469999999999999999853 2 23555 5788
Q ss_pred EEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeec
Q 018416 155 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD 234 (356)
Q Consensus 155 I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~ 234 (356)
|.||++|||+.|+|||+|||+..+ .++..|.+||+.||.+|++.....++..+|+.+ ++++.++++|+
T Consensus 294 I~Vd~~~~t~~p~VyAiGDv~~~~----------~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~--~~~p~ia~vGl 361 (471)
T PRK06467 294 IRVDKQCRTNVPHIFAIGDIVGQP----------MLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIA--YTEPEVAWVGL 361 (471)
T ss_pred EeeCCCcccCCCCEEEehhhcCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--ECCCceeEEEC
Confidence 999999999999999999998644 357789999999999999865444556778654 78899999999
Q ss_pred ccceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416 235 NVGEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE 293 (356)
Q Consensus 235 ~~~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~ 293 (356)
++.++...| . ....+|.++.+ ++++|||+|++|+++.+ ++.++.||++++|++||.++.
T Consensus 362 te~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~ 441 (471)
T PRK06467 362 TEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTI 441 (471)
T ss_pred CHHHHHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence 886443211 1 01123666555 57999999999988665 578899999999999998865
Q ss_pred hcCCCcccCcCCC
Q 018416 294 TQGLGFALAVSQK 306 (356)
Q Consensus 294 ~~~~~yap~~~~~ 306 (356)
.|+|+|++.
T Consensus 442 ----~~hPt~~e~ 450 (471)
T PRK06467 442 ----HAHPTLHES 450 (471)
T ss_pred ----cCCCChHHH
Confidence 788988864
No 17
>PTZ00058 glutathione reductase; Provisional
Probab=100.00 E-value=1.2e-36 Score=307.21 Aligned_cols=284 Identities=18% Similarity=0.226 Sum_probs=217.8
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+ .+++ .++...+ . .+++++|||+|++|+|+|..|+++|.+||++++++++++. +|+++
T Consensus 213 ~P~~P~IpG~~--~v~t---s~~~~~l----~--~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~-~d~~i 280 (561)
T PTZ00058 213 KPIFPDVKGKE--FTIS---SDDFFKI----K--EAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRK-FDETI 280 (561)
T ss_pred CCCCCCCCCce--eEEE---HHHHhhc----c--CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccccc-CCHHH
Confidence 57778899864 3432 2333222 2 3799999999999999999999999999999999999986 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCchhhhcc---cccccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNTSLFEGQ---LTLEKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~~l~~~~---l~~~~g~I~vd~ 159 (356)
.+.+.+.|+++||++++++.+.+++.++++.+. +.+.++ +++++|.|++++|++||++++... +..++|+|.||+
T Consensus 281 ~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~I~VDe 359 (561)
T PTZ00058 281 INELENDMKKNNINIITHANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGYIKVDD 359 (561)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCCccccCccccceecCCCeEEECc
Confidence 999999999999999999999999864333332 344444 579999999999999999876422 233678899999
Q ss_pred ccccCCCCEEEEccccccCcc-----------------------ccCccc-ccccHHHHHHHHHHHHHHHcCCCC-CCCC
Q 018416 160 RLQSSNSSVYAVGDVAAFPLK-----------------------LLGETR-RLEHVDSARKSAKHAVAAIMEPDK-TDKF 214 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~-----------------------~~g~~~-~~~~~~~A~~~g~~aa~~i~g~~~-~~~~ 214 (356)
+|||+.|+|||+|||+..++. .++++. ..+++..|.+||+++|+||+|... ...+
T Consensus 360 ~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~~~~~~~~ 439 (561)
T PTZ00058 360 NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNY 439 (561)
T ss_pred CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCCCCcccCC
Confidence 999999999999999984431 334444 367889999999999999998632 2345
Q ss_pred CCCCeEEEEecCceEEEeecccceEEEE-c---------cC--------------CCCceEEEEe--eCCeEEEEEEeCC
Q 018416 215 DYLPFFYSRVFTLSWQFYGDNVGEVVHY-G---------NF--------------SGTTFGAYWV--NKGRLVGSFLEGG 268 (356)
Q Consensus 215 ~~~p~~~~~~~~~~~~~~G~~~~~~~~~-g---------~~--------------~~~~~~~~~~--~~g~ilGa~~vg~ 268 (356)
..+|+.++ .++.++++|+++.++... | .. ...+|.++.. ++|+|||+|++|+
T Consensus 440 ~~ip~~vf--t~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~t~~ILG~~ivG~ 517 (561)
T PTZ00058 440 KLIPSVIF--SHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVCVGKEELIKGLHIVGL 517 (561)
T ss_pred CCCCeEEe--CCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEEECCCCEEEEEEEECC
Confidence 66786533 446789999988644321 1 00 0123666554 6899999999998
Q ss_pred CHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416 269 TKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 306 (356)
Q Consensus 269 ~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 306 (356)
++.+ ++.++.||++++|++||.++. ..+|.+++.
T Consensus 518 ~a~elI~~~a~ai~~~~t~~dl~~~~----~~hPt~~e~ 552 (561)
T PTZ00058 518 NADEILQGFAVALKMNATKADFDETI----PIHPTAAEE 552 (561)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHhhcc----cCCCChHHH
Confidence 8665 578899999999999998865 567777765
No 18
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=100.00 E-value=1.3e-36 Score=303.06 Aligned_cols=267 Identities=24% Similarity=0.282 Sum_probs=209.9
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+..++++.. ++..+ . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus 139 ~p~~p~i~G~~~~~~~~~~---~~~~~----~-~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~ 209 (463)
T TIGR02053 139 RPAIPPIPGLKEAGYLTSE---EALAL----D-RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEI 209 (463)
T ss_pred CCCCCCCCCcccCceECch---hhhCc----c-cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHH
Confidence 5788899998766665432 33222 1 14689999999999999999999999999999999999997 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCcEEecCeEEEecCCCCCch-h-hhc-cccc-ccCcEE
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGNRLPTDMVVVGIGIRPNTS-L-FEG-QLTL-EKGGIK 156 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~~i~~D~vi~a~G~~p~~~-l-~~~-~l~~-~~g~I~ 156 (356)
...+++.|++.||++++++++++++.++++ ..+++. +++++++|.|++++|++|+++ + ++. .+.. ++|+|.
T Consensus 210 ~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~ 287 (463)
T TIGR02053 210 SAAVEEALAEEGIEVVTSAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGIL 287 (463)
T ss_pred HHHHHHHHHHcCCEEEcCcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEe
Confidence 999999999999999999999999863332 233332 236799999999999999998 4 332 3555 568899
Q ss_pred EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecc
Q 018416 157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDN 235 (356)
Q Consensus 157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~ 235 (356)
||++|||+.|+|||+|||+..+ .++..|.+||+.||.||++. ....++..+|. ..++++.++++|++
T Consensus 288 vd~~~~Ts~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~~a~vGlt 355 (463)
T TIGR02053 288 VDETLRTSNPGIYAAGDVTGGL----------QLEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPAVASVGLT 355 (463)
T ss_pred ECCCccCCCCCEEEeeecCCCc----------ccHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCceEEEeCC
Confidence 9999999999999999999753 35778999999999999986 43334455674 56678899999998
Q ss_pred cceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHh
Q 018416 236 VGEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELE 293 (356)
Q Consensus 236 ~~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~ 293 (356)
+.++...| . .+..+|.++.. ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus 356 e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~ 434 (463)
T TIGR02053 356 EAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTL 434 (463)
T ss_pred HHHHHhcCCCeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc
Confidence 75432111 1 11134666654 58999999999988665 577899999999999998875
No 19
>PLN02507 glutathione reductase
Probab=100.00 E-value=2.4e-36 Score=302.88 Aligned_cols=274 Identities=19% Similarity=0.256 Sum_probs=214.5
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|..+++||.+. . .+.+++..++. .+++++|||+|++|+|+|..|++.|.+||++++.+++++. +|+++
T Consensus 178 ~p~~p~ipG~~~--~---~~~~~~~~l~~-----~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~ 246 (499)
T PLN02507 178 RAQRPNIPGKEL--A---ITSDEALSLEE-----LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEM 246 (499)
T ss_pred CCCCCCCCCccc--e---echHHhhhhhh-----cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHH
Confidence 577788888642 2 24455555432 4789999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--hc-cccc-ccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~l~~-~~g~I~vd~ 159 (356)
++.+.+.|+++||++++++++++++..+++ ..+.+.+|+++++|.|++++|++||++++ +. ++.. ++|+|.||+
T Consensus 247 ~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~--~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~ 324 (499)
T PLN02507 247 RAVVARNLEGRGINLHPRTNLTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE 324 (499)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEeCCe--EEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC
Confidence 999999999999999999999999863333 34667788899999999999999999863 33 3555 568899999
Q ss_pred ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccce
Q 018416 160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVGE 238 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~~ 238 (356)
++||+.|+|||+|||+... .++..|.+||+.+++||++.... ..+..+|+.++. ...++++|+++.+
T Consensus 325 ~~~Ts~p~IyAiGDv~~~~----------~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~--~p~ia~vGlte~e 392 (499)
T PLN02507 325 YSRTNIPSIWAIGDVTNRI----------NLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFC--IPPLSVVGLSEEE 392 (499)
T ss_pred CCcCCCCCEEEeeEcCCCC----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEEC--CCccEEEeCCHHH
Confidence 9999999999999999743 35678999999999999976431 234456744432 3368999998754
Q ss_pred EEEE-c--------c--C--------CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416 239 VVHY-G--------N--F--------SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 296 (356)
Q Consensus 239 ~~~~-g--------~--~--------~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 296 (356)
+... + . . ...+|.++.+ ++++|||+|++|+++.+ ++.++.||+.++|++||.++.
T Consensus 393 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~--- 469 (499)
T PLN02507 393 AVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTV--- 469 (499)
T ss_pred HHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcC---
Confidence 3321 0 0 0 1123666554 58999999999988654 678899999999999998754
Q ss_pred CCcccCcCCC
Q 018416 297 LGFALAVSQK 306 (356)
Q Consensus 297 ~~yap~~~~~ 306 (356)
.++|.+++.
T Consensus 470 -~~hPt~~E~ 478 (499)
T PLN02507 470 -GIHPSAAEE 478 (499)
T ss_pred -cCCCChHHH
Confidence 677888776
No 20
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=6.5e-37 Score=303.87 Aligned_cols=310 Identities=22% Similarity=0.271 Sum_probs=263.1
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
.|-.+++||.++++|+.+|+++|...+.+.-+ ..++.+|||||..|+|+|..|...|.+|++++..+.+|.+++|+..
T Consensus 112 ~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar--~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~a 189 (793)
T COG1251 112 YPFILPIPGSDLPGVFVYRTIDDVEAMLDCAR--NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTA 189 (793)
T ss_pred cccccCCCCCCCCCeeEEecHHHHHHHHHHHh--ccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHH
Confidence 46778899999999999999999999998843 4677999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcccccccCcEEEeccccc
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGRLQS 163 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd~~l~t 163 (356)
...+++.|+++|++++++...+++.+ ++.+..+.++||..+++|+|++++|.+||++++.......+.+|.||++|||
T Consensus 190 g~lL~~~le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnrGIvvnd~mqT 267 (793)
T COG1251 190 GRLLRRKLEDLGIKVLLEKNTEEIVG--EDKVEGVRFADGTEIPADLVVMAVGIRPNDELAKEAGLAVNRGIVVNDYMQT 267 (793)
T ss_pred HHHHHHHHHhhcceeecccchhhhhc--CcceeeEeecCCCcccceeEEEecccccccHhHHhcCcCcCCCeeecccccc
Confidence 99999999999999999999888864 6677899999999999999999999999999998774443449999999999
Q ss_pred CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeeccc----ceE
Q 018416 164 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNV----GEV 239 (356)
Q Consensus 164 s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~----~~~ 239 (356)
|+|+|||+|+|+++....+ .++.++.+|++.+|+++++...+.....+++...++.+.++.+.|.-. .+.
T Consensus 268 sdpdIYAvGEcae~~g~~y------GLVaP~yeq~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD~~e~~~~~~ 341 (793)
T COG1251 268 SDPDIYAVGECAEHRGKVY------GLVAPLYEQAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGDFQETEGAES 341 (793)
T ss_pred cCCCeeehhhHHHhcCccc------eehhHHHHHHHHHHHHhccCcccccccccchhhhcccccceeeccchhhcCCCce
Confidence 9999999999999987665 468899999999999999986544555677777888888888888543 345
Q ss_pred EEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCCCCCCCcccccccc
Q 018416 240 VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLPSTPVDGKTVP 319 (356)
Q Consensus 240 ~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~~~~~~~~~~~n 319 (356)
+.+.|.....|.++.+++++|+|+.++|. ...-..+-.+|..+.+++++.+..-....+.|+-+.+..|.+...|. ||
T Consensus 342 iv~~D~~~~iYKrlvL~dd~IvgavL~GD-t~d~~~l~~li~~~~~~se~r~~li~~~~~~~~~~v~~lpd~~~IC~-Cn 419 (793)
T COG1251 342 IVFRDEQRGIYKKLVLKDDKIVGAVLYGD-TSDGGWLLDLILKGADISEIRDTLILPQGSAPSLGVAALPDSAQICG-CN 419 (793)
T ss_pred EEEecccccceeEEEEeCCeEEEEEEEee-cccchHHHHHHhcCCCccccchhhccccccCCccchhhCCCCCeeec-CC
Confidence 55656655569999999999999999995 44456778889999999887655433344578788888888998887 55
Q ss_pred ccccCc
Q 018416 320 GLVLGK 325 (356)
Q Consensus 320 ~~~~~~ 325 (356)
.++...
T Consensus 420 ~VtKG~ 425 (793)
T COG1251 420 GVTKGA 425 (793)
T ss_pred CccHHH
Confidence 555443
No 21
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=100.00 E-value=2.5e-36 Score=299.57 Aligned_cols=274 Identities=20% Similarity=0.262 Sum_probs=214.9
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+. .+ +.+++..+. ..+++++|||+|++|+|+|..|++.|.+||++++++.+++. +++++
T Consensus 141 ~p~~p~i~G~~~--~~---~~~~~~~l~-----~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~ 209 (446)
T TIGR01424 141 RPQKPNLPGHEL--GI---TSNEAFHLP-----TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDM 209 (446)
T ss_pred cCCCCCCCCccc--ee---chHHhhccc-----ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHH
Confidence 577788888652 22 333443322 14789999999999999999999999999999999999987 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd~ 159 (356)
.+.+.+.|+++||++++++++++++.++++ ..+++.+|+++++|.|++++|++||++.+ + .+++. ++|+|.||+
T Consensus 210 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~ 287 (446)
T TIGR01424 210 RALLARNMEGRGIRIHPQTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDE 287 (446)
T ss_pred HHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCC
Confidence 999999999999999999999999864333 34667788899999999999999999853 2 33555 568899999
Q ss_pred ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecccce
Q 018416 160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDNVGE 238 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~~~~ 238 (356)
++||+.|+|||+|||+... .++..|.+||+.+++||++... ...+..+|+.++.. +.++++|+++.+
T Consensus 288 ~~~Ts~~~IyA~GD~~~~~----------~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~--p~ia~vG~te~~ 355 (446)
T TIGR01424 288 YSRTSIPSIYAVGDVTDRI----------NLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQ--PPLGTVGLTEEE 355 (446)
T ss_pred CCccCCCCEEEeeccCCCc----------cchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCC--chhEEEECCHHH
Confidence 9999999999999998643 4577899999999999998542 24556788766543 378999998754
Q ss_pred EEEEc------------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416 239 VVHYG------------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 296 (356)
Q Consensus 239 ~~~~g------------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 296 (356)
+...+ . ....+|.++.. ++++|||+|++|+++.+ ++.++.||++++|++||.++.
T Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~--- 432 (446)
T TIGR01424 356 AREKFTGDILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTV--- 432 (446)
T ss_pred HHhhcCCCEEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcc---
Confidence 33221 0 01124666554 68999999999988665 578899999999999998855
Q ss_pred CCcccCcCCC
Q 018416 297 LGFALAVSQK 306 (356)
Q Consensus 297 ~~yap~~~~~ 306 (356)
..+|.+++.
T Consensus 433 -~~hPt~~e~ 441 (446)
T TIGR01424 433 -GIHPSSAEE 441 (446)
T ss_pred -ccCCChHHH
Confidence 567877764
No 22
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=2.7e-36 Score=298.99 Aligned_cols=275 Identities=19% Similarity=0.233 Sum_probs=214.1
Q ss_pred CCccCCCCCCC-CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416 4 KLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 82 (356)
Q Consensus 4 ~p~~~~ipG~~-~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~ 82 (356)
+|..+++||.+ .+++++.. + +.+. + ..+++++|||+|++|+|+|..|++.|.+||++++++++++. ++++
T Consensus 130 ~p~~p~i~G~~~~~~v~~~~---~---~~~~-~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~ 200 (441)
T PRK08010 130 QTVVPPIPGITTTPGVYDST---G---LLNL-K-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRD 200 (441)
T ss_pred cCCCCCCCCccCCCCEEChh---H---hhcc-c-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHH
Confidence 57788999974 46776432 2 2221 1 25789999999999999999999999999999999999987 7999
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEe
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVT 158 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd 158 (356)
+.+.+.+.|+++||++++++++++++.+ ++.+ .+.++++ ++++|.+++++|++||++++ + .++.+ ++|+|.||
T Consensus 201 ~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd 277 (441)
T PRK08010 201 IADNIATILRDQGVDIILNAHVERISHH-ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVD 277 (441)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEEC
Confidence 9999999999999999999999999863 3332 3555444 58999999999999999853 2 23555 56889999
Q ss_pred cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCeEEEEecCceEEEeeccc
Q 018416 159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT--DKFDYLPFFYSRVFTLSWQFYGDNV 236 (356)
Q Consensus 159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~--~~~~~~p~~~~~~~~~~~~~~G~~~ 236 (356)
+++||+.|+|||+|||+..+. +...|..||+.+++||+|.... ..+..+|+ ..++++.++++|+++
T Consensus 278 ~~~~Ts~~~IyA~GD~~~~~~----------~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~ia~vGlte 345 (441)
T PRK08010 278 KYLHTTADNIWAMGDVTGGLQ----------FTYISLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPPLSRVGMTE 345 (441)
T ss_pred CCcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCCceeeeCCH
Confidence 999999999999999998653 4567888999999999985221 23445664 457889999999998
Q ss_pred ceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhc
Q 018416 237 GEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ 295 (356)
Q Consensus 237 ~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~ 295 (356)
.++...| + .+..+|.++.. ++|+|||+|++|+++.+ ++.++.||++++|++||.+.
T Consensus 346 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~--- 422 (441)
T PRK08010 346 EQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQ--- 422 (441)
T ss_pred HHHHHcCCCeEEEEEecCcChhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc---
Confidence 6443211 1 11123666554 68999999999988655 67889999999999998854
Q ss_pred CCCcccCcCCC
Q 018416 296 GLGFALAVSQK 306 (356)
Q Consensus 296 ~~~yap~~~~~ 306 (356)
+.++|++++.
T Consensus 423 -~~~hPt~~e~ 432 (441)
T PRK08010 423 -IFTHPSMSES 432 (441)
T ss_pred -cccCCchHHH
Confidence 4788888764
No 23
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=3.6e-36 Score=299.79 Aligned_cols=272 Identities=24% Similarity=0.305 Sum_probs=212.3
Q ss_pred CCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHH
Q 018416 10 LSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEE 89 (356)
Q Consensus 10 ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~ 89 (356)
+||.+.++. .+.+.+++.++.. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++.+.+++
T Consensus 149 ~pg~~~~~~-~v~~~~~~~~~~~-----~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~ 221 (462)
T PRK06416 149 LPGIEIDGR-VIWTSDEALNLDE-----VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAER 221 (462)
T ss_pred CCCCCCCCC-eEEcchHhhCccc-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHH
Confidence 466654443 2234455544321 4689999999999999999999999999999999999997 89999999999
Q ss_pred HHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC---cEEecCeEEEecCCCCCchhh---hcccccccCcEEEeccccc
Q 018416 90 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLF---EGQLTLEKGGIKVTGRLQS 163 (356)
Q Consensus 90 ~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~l~---~~~l~~~~g~I~vd~~l~t 163 (356)
.|+++||++++++++++++.++ +. ..+.+.++ +++++|.||+++|++|++.++ ..++..++|+|.||+++||
T Consensus 222 ~l~~~gV~i~~~~~V~~i~~~~-~~-v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t 299 (462)
T PRK06416 222 ALKKRGIKIKTGAKAKKVEQTD-DG-VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRT 299 (462)
T ss_pred HHHHcCCEEEeCCEEEEEEEeC-CE-EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCcc
Confidence 9999999999999999998633 33 34555555 679999999999999999865 2335545788999999999
Q ss_pred CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc
Q 018416 164 SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG 243 (356)
Q Consensus 164 s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g 243 (356)
+.|+|||+|||+..+ +.+..|..||+.+|.||++.....++..+| ...++++.++++|+++.++...|
T Consensus 300 ~~~~VyAiGD~~~~~----------~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~--~~~~~~~~~a~vG~te~~a~~~g 367 (462)
T PRK06416 300 NVPNIYAIGDIVGGP----------MLAHKASAEGIIAAEAIAGNPHPIDYRGIP--AVTYTHPEVASVGLTEAKAKEEG 367 (462)
T ss_pred CCCCEEEeeecCCCc----------chHHHHHHHHHHHHHHHcCCCCCCCCCCCC--eEEECCCceEEEeCCHHHHHhcC
Confidence 999999999999743 457889999999999999864323333344 56678999999999876542211
Q ss_pred -----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccC
Q 018416 244 -----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALA 302 (356)
Q Consensus 244 -----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~ 302 (356)
. ....+|.++.+ ++++|||+|++|+.+.+ ++.++.||+.++|++||.++. .++|+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt 443 (462)
T PRK06416 368 FDVKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTI----HPHPT 443 (462)
T ss_pred CCeEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----cCCCC
Confidence 0 01123666544 68999999999988665 578899999999999998865 56788
Q ss_pred cCCC
Q 018416 303 VSQK 306 (356)
Q Consensus 303 ~~~~ 306 (356)
+++.
T Consensus 444 ~~e~ 447 (462)
T PRK06416 444 LSEA 447 (462)
T ss_pred HHHH
Confidence 7754
No 24
>PRK14694 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.5e-36 Score=299.39 Aligned_cols=274 Identities=21% Similarity=0.252 Sum_probs=214.4
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+...+++ ..++..+. ..+++++|||+|++|+|+|..|+++|.+||++++ +++++. +++++
T Consensus 151 ~p~~p~i~G~~~~~~~~---~~~~~~l~-----~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~ 220 (468)
T PRK14694 151 RPAEPPVPGLAETPYLT---STSALELD-----HIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAV 220 (468)
T ss_pred CCCCCCCCCCCCCceEc---chhhhchh-----cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHH
Confidence 68888999986444432 23443332 1478999999999999999999999999999987 567776 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh---cccccccCcEEEecc
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTLEKGGIKVTGR 160 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~l~~~~g~I~vd~~ 160 (356)
.+.+++.|+++||++++++.+++++.+ ++. ..+.+.+ .++++|.|++++|++||++++. .++..++|+|.||++
T Consensus 221 ~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~~-~~v~~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~ 297 (468)
T PRK14694 221 GEAIEAAFRREGIEVLKQTQASEVDYN-GRE-FILETNA-GTLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEH 297 (468)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEECC-CEEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCC
Confidence 999999999999999999999999763 332 2355444 4799999999999999998752 234456788999999
Q ss_pred cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEE
Q 018416 161 LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVV 240 (356)
Q Consensus 161 l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~ 240 (356)
+||++|+|||+|||+..+. .+..|..||+.||.||++.....++..+|.+ .++++.++++|+++.++.
T Consensus 298 ~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~~a~vGlte~~a~ 365 (468)
T PRK14694 298 LQTTVSGIYAAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQVATVGLSEAEAQ 365 (468)
T ss_pred cccCCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCCeEEeeCCHHHHH
Confidence 9999999999999997553 4567889999999999986544455567754 478889999999876432
Q ss_pred EEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCc
Q 018416 241 HYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGF 299 (356)
Q Consensus 241 ~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~y 299 (356)
..| . .+..+|.++.. ++|+|||+|++|+++.+ ++.++.||+++.|++||.++. .+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~ 441 (468)
T PRK14694 366 AQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADEL----FP 441 (468)
T ss_pred HcCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc----cC
Confidence 111 0 11234766554 68999999999987655 578899999999999999987 45
Q ss_pred ccCcCCC
Q 018416 300 ALAVSQK 306 (356)
Q Consensus 300 ap~~~~~ 306 (356)
+|.+++.
T Consensus 442 hPt~~e~ 448 (468)
T PRK14694 442 YLTMVEG 448 (468)
T ss_pred CCchHHH
Confidence 7777764
No 25
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.7e-36 Score=299.27 Aligned_cols=275 Identities=18% Similarity=0.191 Sum_probs=213.9
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++++.+.+.+++. +++..+. ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++
T Consensus 143 ~p~~~p~~~~~~~~v~~~---~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~ 213 (458)
T PRK06912 143 EPTELPFAPFDGKWIINS---KHAMSLP-----SIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDI 213 (458)
T ss_pred CCCCCCCCCCCCCeEEcc---hHHhCcc-----ccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHH
Confidence 466677787765555533 3333321 14789999999999999999999999999999999999997 79999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCchhh--h-cccccccCcEEEe
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTSLF--E-GQLTLEKGGIKVT 158 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~l~--~-~~l~~~~g~I~vd 158 (356)
.+.+.+.|+++||++++++++++++.+ +.. ..+.. +| +++++|.|++++|++|+++.+ + .++...+++|.||
T Consensus 214 ~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd 290 (458)
T PRK06912 214 AHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVN 290 (458)
T ss_pred HHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeC
Confidence 999999999999999999999999753 332 22332 34 369999999999999999753 2 2355545569999
Q ss_pred cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccce
Q 018416 159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGE 238 (356)
Q Consensus 159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~ 238 (356)
+++||+.|+|||+|||+..+ +++..|.+||+.||.+++|......+..+|..+ ++++.++++|+++.+
T Consensus 291 ~~~~ts~~~VyA~GD~~~~~----------~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v--~~~p~~a~vGlte~~ 358 (458)
T PRK06912 291 EHMQTNVPHIYACGDVIGGI----------QLAHVAFHEGTTAALHASGEDVKVNYHAVPRCI--YTSPEIASVGLTEKQ 358 (458)
T ss_pred CCeecCCCCEEEEeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEE--ecCchhEEeeCCHHH
Confidence 99999999999999999643 457789999999999999865434456788654 567889999998754
Q ss_pred EEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCC
Q 018416 239 VVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGL 297 (356)
Q Consensus 239 ~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~ 297 (356)
+...+ . ....+|.++.+ ++++|||+|++|+.+.+ ++.++.||++++|++||.++.
T Consensus 359 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~---- 434 (458)
T PRK06912 359 AREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFI---- 434 (458)
T ss_pred HHHCCCCeEEEEEecCcchhHhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----
Confidence 32111 0 01123666554 58999999999988665 578899999999999988765
Q ss_pred CcccCcCCC
Q 018416 298 GFALAVSQK 306 (356)
Q Consensus 298 ~yap~~~~~ 306 (356)
.|+|+|++.
T Consensus 435 ~~hPt~~e~ 443 (458)
T PRK06912 435 AAHPTLSEA 443 (458)
T ss_pred ccCCCHHHH
Confidence 789998875
No 26
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=4.7e-36 Score=297.99 Aligned_cols=275 Identities=19% Similarity=0.231 Sum_probs=214.5
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+ .+++ .++...+ . ..+++++|||+|++|+|+|..|++.|.+||++++++.+++. +++++
T Consensus 142 ~p~~p~i~g~~--~~~~---~~~~~~~----~-~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~ 210 (450)
T PRK06116 142 RPSIPDIPGAE--YGIT---SDGFFAL----E-ELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRG-FDPDI 210 (450)
T ss_pred CCCCCCCCCcc--eeEc---hhHhhCc----c-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccc-cCHHH
Confidence 57778888864 3332 2222221 1 14789999999999999999999999999999999998886 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh---hccccc-ccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~---~~~l~~-~~g~I~vd~ 159 (356)
.+.+.+.|+++||++++++++++++.++++.+ .+++.+|+++++|.|++++|++|+++.+ ..++.. ++|+|.||+
T Consensus 211 ~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~ 289 (450)
T PRK06116 211 RETLVEEMEKKGIRLHTNAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDE 289 (450)
T ss_pred HHHHHHHHHHCCcEEECCCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCC
Confidence 99999999999999999999999987444433 4677888999999999999999999842 233555 568899999
Q ss_pred ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeecccc
Q 018416 160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNVG 237 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~~ 237 (356)
++||+.|+|||+|||+..+ +++..|++||+.||+||++... ...+..+|+.++ ..+.++++|+++.
T Consensus 290 ~~~Ts~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if--~~p~~a~vGlte~ 357 (450)
T PRK06116 290 YQNTNVPGIYAVGDVTGRV----------ELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVF--SHPPIGTVGLTEE 357 (450)
T ss_pred CCCcCCCCEEEEeecCCCc----------CcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEe--CCCccEEeeCCHH
Confidence 9999999999999998643 4577899999999999998543 235567886553 2347899999875
Q ss_pred eEEEEc----------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhh
Q 018416 238 EVVHYG----------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET 294 (356)
Q Consensus 238 ~~~~~g----------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~ 294 (356)
++...+ . .+..+|.++.+ ++++|||+|++|+.+.+ ++.++.||+.++|++||.+..
T Consensus 358 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~- 436 (450)
T PRK06116 358 EAREQYGEDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTV- 436 (450)
T ss_pred HHHHhCCCCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc-
Confidence 332111 0 11234666655 58999999999988655 678899999999999998865
Q ss_pred cCCCcccCcCCC
Q 018416 295 QGLGFALAVSQK 306 (356)
Q Consensus 295 ~~~~yap~~~~~ 306 (356)
..+|.+++.
T Consensus 437 ---~~hPt~~e~ 445 (450)
T PRK06116 437 ---AIHPTAAEE 445 (450)
T ss_pred ---ccCCChHHH
Confidence 567777654
No 27
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=8e-36 Score=305.06 Aligned_cols=278 Identities=18% Similarity=0.202 Sum_probs=212.9
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|..+++++.+.+++++. +++..+.. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus 285 ~P~~P~~~~~~~~~V~ts---~d~~~l~~-----lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-~d~ei 355 (659)
T PTZ00153 285 TPNIPDNIEVDQKSVFTS---DTAVKLEG-----LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-LDADV 355 (659)
T ss_pred CCCCCCCCCCCCCcEEeh---HHhhhhhh-----cCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccc-CCHHH
Confidence 456666666666667754 45555432 3789999999999999999999999999999999999997 89999
Q ss_pred HHHHHHHH-HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-------C--------cEEecCeEEEecCCCCCchhh--h
Q 018416 84 ASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-------G--------NRLPTDMVVVGIGIRPNTSLF--E 145 (356)
Q Consensus 84 ~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-------g--------~~i~~D~vi~a~G~~p~~~l~--~ 145 (356)
.+.+.+.+ +++||++++++.+++++.++++....+.+.+ + +++++|.||+++|++||++.+ +
T Consensus 356 s~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~ 435 (659)
T PTZ00153 356 AKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLD 435 (659)
T ss_pred HHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCch
Confidence 99999876 6799999999999999864333323343321 1 379999999999999999864 2
Q ss_pred c-ccccccCcEEEecccccC------CCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC----------
Q 018416 146 G-QLTLEKGGIKVTGRLQSS------NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP---------- 208 (356)
Q Consensus 146 ~-~l~~~~g~I~vd~~l~ts------~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~---------- 208 (356)
. .+..++|+|.||++|||+ +|+|||+|||+..+ +++..|.+||+.+++||++.
T Consensus 436 ~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~----------~La~~A~~qg~~aa~ni~g~~~~~~~~~~~ 505 (659)
T PTZ00153 436 KLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ----------MLAHTASHQALKVVDWIEGKGKENVNINVE 505 (659)
T ss_pred hcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCc----------cCHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 2 355566889999999997 69999999998543 46778999999999999986
Q ss_pred ---CCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-------------cC-------C-------------------
Q 018416 209 ---DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-------------NF-------S------------------- 246 (356)
Q Consensus 209 ---~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-------------~~-------~------------------- 246 (356)
.....+..+|. ..++++.++++|+++.++...+ .. +
T Consensus 506 ~~~~~~~~~~~iP~--~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~ 583 (659)
T PTZ00153 506 NWASKPIIYKNIPS--VCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNT 583 (659)
T ss_pred cccccccccCcCCE--EEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhcccccccccccccccccccccc
Confidence 22233455664 4567788999999876432211 00 0
Q ss_pred ---CCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416 247 ---GTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 306 (356)
Q Consensus 247 ---~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 306 (356)
..+|.++.. ++++|||+|++|+++.+ ++.++.||++++|++||.++. .++|++++.
T Consensus 584 ~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~----~~hPT~sE~ 645 (659)
T PTZ00153 584 VDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMV----HSHPTISEV 645 (659)
T ss_pred ccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----CCCCChHHH
Confidence 234666555 68999999999998765 567899999999999998865 466777664
No 28
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=9.3e-36 Score=296.85 Aligned_cols=275 Identities=20% Similarity=0.235 Sum_probs=210.1
Q ss_pred CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHH
Q 018416 9 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE 88 (356)
Q Consensus 9 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~ 88 (356)
++||.+.++.+.+.+ +++..+ . ..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.++
T Consensus 150 ~ipg~~~~~~~~~~~-~~~~~~----~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~ 222 (466)
T PRK06115 150 PLPGVTIDNQRIIDS-TGALSL----P-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQ 222 (466)
T ss_pred CCCCCCCCCCeEECH-HHHhCC----c-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHH
Confidence 578876556554433 233222 1 25799999999999999999999999999999999999997 8999999999
Q ss_pred HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-C--CCcEEecCeEEEecCCCCCchhh--hc-ccccccCcEEEecccc
Q 018416 89 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-R--DGNRLPTDMVVVGIGIRPNTSLF--EG-QLTLEKGGIKVTGRLQ 162 (356)
Q Consensus 89 ~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-~--~g~~i~~D~vi~a~G~~p~~~l~--~~-~l~~~~g~I~vd~~l~ 162 (356)
+.|+++||++++++++++++.++++....+.. . +++++++|.|++++|++||++.+ +. ++..+++++.||+++|
T Consensus 223 ~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~ 302 (466)
T PRK06115 223 KALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHR 302 (466)
T ss_pred HHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCee
Confidence 99999999999999999998643332222222 1 23579999999999999999853 22 2445445688999999
Q ss_pred cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEE
Q 018416 163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHY 242 (356)
Q Consensus 163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~ 242 (356)
||.|+|||+|||+..+ +++..|.+||+.+++||++.....++..+|..++ .++.++++|+++.++...
T Consensus 303 Ts~~~IyA~GD~~~~~----------~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~--t~p~ia~vGlte~~a~~~ 370 (466)
T PRK06115 303 TSVPGVWVIGDVTSGP----------MLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIY--TRPEVATVGKTEEQLKAE 370 (466)
T ss_pred cCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEE--CCcccEEeeCCHHHHHHC
Confidence 9999999999999754 4678899999999999998654346667887554 367789999987643211
Q ss_pred c-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 018416 243 G-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFAL 301 (356)
Q Consensus 243 g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap 301 (356)
| + .+..+|.++.+ ++++|||+|++|+.+.+ ++.++.||+.++|++||.++. ..+|
T Consensus 371 g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~----~~hP 446 (466)
T PRK06115 371 GRAYKVGKFPFTANSRAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTC----HPHP 446 (466)
T ss_pred CCCEEEEEEecccChhhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCc----cCCC
Confidence 1 1 11134666554 58999999999988665 578899999999999998865 4456
Q ss_pred CcCCC
Q 018416 302 AVSQK 306 (356)
Q Consensus 302 ~~~~~ 306 (356)
.+++.
T Consensus 447 t~~e~ 451 (466)
T PRK06115 447 TRSEA 451 (466)
T ss_pred ChHHH
Confidence 66553
No 29
>PRK14727 putative mercuric reductase; Provisional
Probab=100.00 E-value=4.9e-36 Score=299.83 Aligned_cols=274 Identities=19% Similarity=0.202 Sum_probs=211.9
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+....++ + .+. +.. ...+++++|||+|++|+|+|..|+++|.+||++++. ++++. +|+++
T Consensus 161 ~p~~p~i~G~~~~~~~~--~-~~~--l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~ 230 (479)
T PRK14727 161 TPTIPPIPGLMDTPYWT--S-TEA--LFS---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLL 230 (479)
T ss_pred CCCCCCCCCcCccceec--c-hHH--hcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHH
Confidence 57888899975433332 2 222 111 124799999999999999999999999999999885 67776 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--hc-cccc-ccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~l~~-~~g~I~vd~ 159 (356)
.+.+++.|++.||++++++++++++.+++ . ..+.+.++ ++++|.|++++|++||+.++ +. ++.. .+|+|.||+
T Consensus 231 ~~~l~~~L~~~GV~i~~~~~V~~i~~~~~-~-~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~ 307 (479)
T PRK14727 231 GETLTACFEKEGIEVLNNTQASLVEHDDN-G-FVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNP 307 (479)
T ss_pred HHHHHHHHHhCCCEEEcCcEEEEEEEeCC-E-EEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECC
Confidence 99999999999999999999999976333 2 33555554 69999999999999999853 22 3555 568899999
Q ss_pred ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018416 160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~ 239 (356)
+|||++|+|||+|||+..+. ....|..||+.||.||++.....++..+|+. .++++.++++|+++.++
T Consensus 308 ~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~--~~~~p~ia~vGlte~~a 375 (479)
T PRK14727 308 AMETSAPDIYAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGNATLDLSAMPAV--IFTDPQVATVGLSEAKA 375 (479)
T ss_pred CeecCCCCEEEeeecCCcch----------hhhHHHHHHHHHHHHHcCCCcccccccCCcE--EEecCceeeeeCCHHHH
Confidence 99999999999999997653 3567889999999999987544455567754 47888999999987644
Q ss_pred EEEc-----------c-----C--CCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCC
Q 018416 240 VHYG-----------N-----F--SGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG 298 (356)
Q Consensus 240 ~~~g-----------~-----~--~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~ 298 (356)
...| + . ...+|.++.+ ++++|||+|++|+.+.+ ++.++.||+.++|++||.++. .
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~ 451 (479)
T PRK14727 376 HLSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQL----F 451 (479)
T ss_pred HHcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCC----c
Confidence 2111 1 1 1134666554 58999999999988655 578899999999999999877 4
Q ss_pred cccCcCCC
Q 018416 299 FALAVSQK 306 (356)
Q Consensus 299 yap~~~~~ 306 (356)
.+|.+++.
T Consensus 452 ~hPt~~E~ 459 (479)
T PRK14727 452 PYLTMVEG 459 (479)
T ss_pred cCCChHHH
Confidence 56777664
No 30
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=1e-35 Score=296.79 Aligned_cols=250 Identities=24% Similarity=0.322 Sum_probs=201.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|++++..+.+.|+++||++++++++++++.+ ++.+ .
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~ 247 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGVKILTGTKVESIDDN-GSKV-T 247 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCeE-E
Confidence 5789999999999999999999999999999999999997 79999999999999999999999999999863 3322 3
Q ss_pred EEeC--CC--cEEecCeEEEecCCCCCchhh---hccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccc
Q 018416 118 VNLR--DG--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 189 (356)
Q Consensus 118 v~~~--~g--~~i~~D~vi~a~G~~p~~~l~---~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~ 189 (356)
+.+. +| +++++|.|++++|++||++++ ..++.. ++|+|.||++|||+.|+|||+|||+..+ +
T Consensus 248 v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~IyAiGD~~~~~----------~ 317 (466)
T PRK07818 248 VTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKL----------Q 317 (466)
T ss_pred EEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCCEEEEeecCCCc----------c
Confidence 4443 56 479999999999999999853 333555 5688999999999999999999998643 4
Q ss_pred cHHHHHHHHHHHHHHHcCCCCC-C-CCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCc
Q 018416 190 HVDSARKSAKHAVAAIMEPDKT-D-KFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTT 249 (356)
Q Consensus 190 ~~~~A~~~g~~aa~~i~g~~~~-~-~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~ 249 (356)
++..|..||+.||.||++.... . .+..+|. ..++++.++++|+++.++...| . .+..+
T Consensus 318 l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g 395 (466)
T PRK07818 318 LAHVAEAQGVVAAETIAGAETLELGDYRMMPR--ATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPTG 395 (466)
T ss_pred cHhHHHHHHHHHHHHHcCCCCCccCccCCCCe--EEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCccchhhhcCCCCe
Confidence 6788999999999999986431 1 4455664 4567889999999876542211 1 11134
Q ss_pred eEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416 250 FGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 306 (356)
Q Consensus 250 ~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 306 (356)
|.|+.. ++|+|||+|++|+.+.+ ++.++.||++++|++||.+.. .++|.+++.
T Consensus 396 ~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~ 451 (466)
T PRK07818 396 FVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNV----HTHPTLSEA 451 (466)
T ss_pred EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCc----cCCCchHHH
Confidence 666554 58999999999988665 577899999999999998844 567887765
No 31
>PLN02546 glutathione reductase
Probab=100.00 E-value=1.1e-35 Score=300.18 Aligned_cols=274 Identities=18% Similarity=0.265 Sum_probs=213.4
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|..+++||.+ +++ +.+++..+ .. .+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++
T Consensus 227 ~p~~P~IpG~~--~v~---~~~~~l~~---~~--~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~-~d~~~ 295 (558)
T PLN02546 227 RPFIPDIPGIE--HAI---DSDAALDL---PS--KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRG-FDEEV 295 (558)
T ss_pred CCCCCCCCChh--hcc---CHHHHHhc---cc--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccc-cCHHH
Confidence 56777888864 333 33333322 11 5789999999999999999999999999999999999986 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--hc-cccc-ccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~~-~l~~-~~g~I~vd~ 159 (356)
...+++.|+++||++++++.+++++.++++.+ .+++.+++...+|.|++++|++||++++ +. ++.. ++|+|.||+
T Consensus 296 ~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~ 374 (558)
T PLN02546 296 RDFVAEQMSLRGIEFHTEESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDE 374 (558)
T ss_pred HHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECC
Confidence 99999999999999999999999976444433 4555555556699999999999999853 33 3665 568899999
Q ss_pred ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecC-ceEEEeecccc
Q 018416 160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFT-LSWQFYGDNVG 237 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~-~~~~~~G~~~~ 237 (356)
++||++|+|||+|||+..+ .++..|..||+.+|+||++... ...+..+|+. +|. ..++++|+++.
T Consensus 375 ~l~Ts~p~IYAaGDv~~~~----------~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~---vft~Peia~VGlte~ 441 (558)
T PLN02546 375 YSRTSVPSIWAVGDVTDRI----------NLTPVALMEGGALAKTLFGNEPTKPDYRAVPSA---VFSQPPIGQVGLTEE 441 (558)
T ss_pred CceeCCCCEEEeeccCCCc----------ccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEE---EeCCchHhhccCCHH
Confidence 9999999999999999754 3567899999999999998643 2356678864 444 47899999886
Q ss_pred eEEEEc--------c----------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcC
Q 018416 238 EVVHYG--------N----------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQG 296 (356)
Q Consensus 238 ~~~~~g--------~----------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~ 296 (356)
++...+ . ....+|.++.+ ++++|||+|++|+++.+ ++.++.||++++|++||.+..
T Consensus 442 eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~--- 518 (558)
T PLN02546 442 QAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATV--- 518 (558)
T ss_pred HHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc---
Confidence 543221 0 01134666654 68999999999988665 578899999999999998755
Q ss_pred CCcccCcCCC
Q 018416 297 LGFALAVSQK 306 (356)
Q Consensus 297 ~~yap~~~~~ 306 (356)
..+|.+++.
T Consensus 519 -~~hPT~~E~ 527 (558)
T PLN02546 519 -GIHPTAAEE 527 (558)
T ss_pred -cCCCChHHH
Confidence 566776665
No 32
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=100.00 E-value=2.7e-35 Score=294.29 Aligned_cols=275 Identities=21% Similarity=0.272 Sum_probs=210.3
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+ +..+ +.+++..+. ..+++++|||+|++|+|+|..|+++|.+||++++ +.+++. +|+++
T Consensus 154 ~p~~p~ipG~~-~~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~~ 222 (484)
T TIGR01438 154 RPRYPGIPGAK-ELCI---TSDDLFSLP-----YCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRG-FDQDC 222 (484)
T ss_pred CCCCCCCCCcc-ceee---cHHHhhccc-----ccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccc-cCHHH
Confidence 57888899874 2223 333333221 1468999999999999999999999999999998 577876 89999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC---cEEecCeEEEecCCCCCchhhh---ccccc-c-cCcE
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVVGIGIRPNTSLFE---GQLTL-E-KGGI 155 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~a~G~~p~~~l~~---~~l~~-~-~g~I 155 (356)
++.+++.|+++||++++++.+++++.. ++. ..+++.++ +++++|.|++++|++||++++. .++.. . +|+|
T Consensus 223 ~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I 300 (484)
T TIGR01438 223 ANKVGEHMEEHGVKFKRQFVPIKVEQI-EAK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKI 300 (484)
T ss_pred HHHHHHHHHHcCCEEEeCceEEEEEEc-CCe-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeE
Confidence 999999999999999999999999763 332 34555555 3799999999999999998642 23554 2 4889
Q ss_pred EEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeec
Q 018416 156 KVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGD 234 (356)
Q Consensus 156 ~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~ 234 (356)
.||+++||+.|+|||+|||+.... .++..|.+||+.+++||++... ...+..+|+.+ ++++.++++|+
T Consensus 301 ~Vd~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i--~~~p~ia~vGl 369 (484)
T TIGR01438 301 PADEEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTV--FTPLEYGACGL 369 (484)
T ss_pred ecCCCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCcccccccCCeEE--eCCCceeeecC
Confidence 999999999999999999996322 3567899999999999997542 13456678654 56778999999
Q ss_pred ccceEEEE-c------------cC-------C--CCceEEEEe---eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCc
Q 018416 235 NVGEVVHY-G------------NF-------S--GTTFGAYWV---NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVED 288 (356)
Q Consensus 235 ~~~~~~~~-g------------~~-------~--~~~~~~~~~---~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~d 288 (356)
++.++... + .. + ..+|.++.+ ++++|||+|++|+++.+ ++.++.||++++|++|
T Consensus 370 te~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~d 449 (484)
T TIGR01438 370 SEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKD 449 (484)
T ss_pred CHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHH
Confidence 87543211 0 00 0 124666543 47999999999987665 5788999999999999
Q ss_pred HHHHhhcCCCcccCcCCC
Q 018416 289 LAELETQGLGFALAVSQK 306 (356)
Q Consensus 289 l~~l~~~~~~yap~~~~~ 306 (356)
|.+.. .++|.+++.
T Consensus 450 l~~~~----~~hPt~sE~ 463 (484)
T TIGR01438 450 LDNTI----GIHPVCAEV 463 (484)
T ss_pred Hhhhh----cCCCChHHH
Confidence 98855 667877765
No 33
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=3.5e-35 Score=293.50 Aligned_cols=250 Identities=21% Similarity=0.281 Sum_probs=202.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.+.+.|+++||++++++++++++.++ +.+ .
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~-~~v-~ 258 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG-KGV-S 258 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC-CEE-E
Confidence 4799999999999999999999999999999999999887 899999999999999999999999999998643 332 3
Q ss_pred EEeCC--C--cEEecCeEEEecCCCCCchhh--hc-cccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccc
Q 018416 118 VNLRD--G--NRLPTDMVVVGIGIRPNTSLF--EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLE 189 (356)
Q Consensus 118 v~~~~--g--~~i~~D~vi~a~G~~p~~~l~--~~-~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~ 189 (356)
+.+.+ | +++++|.+++++|++|+++++ +. .+.. ++|+|.||+++||+.|+|||+|||+..+ .
T Consensus 259 v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~~VyA~GD~~~~~----------~ 328 (475)
T PRK06327 259 VAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAIGDVVRGP----------M 328 (475)
T ss_pred EEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCCCEEEEEeccCCc----------c
Confidence 54443 3 469999999999999999843 22 3555 5688999999999999999999998753 3
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceE
Q 018416 190 HVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFG 251 (356)
Q Consensus 190 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~ 251 (356)
++..|..||+.||.||++......+..+|+.+ ++++.++.+|+++.++...| . .+..+|.
T Consensus 329 ~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~--~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 406 (475)
T PRK06327 329 LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI--YTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFV 406 (475)
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE--eCCcceEEEeCCHHHHHHcCCCEEEEEEcccccchhhhcCCCCeEE
Confidence 57789999999999999865434566778755 57888999999876432111 0 1113466
Q ss_pred EEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416 252 AYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 306 (356)
Q Consensus 252 ~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 306 (356)
++.+ ++++|||+|++|+++.+ ++.++.||++++|++||.++. .++|++++.
T Consensus 407 klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~ 460 (475)
T PRK06327 407 KIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARIC----HAHPTLSEV 460 (475)
T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCC----cCCCChHHH
Confidence 6655 58999999999988665 578899999999999998865 677887764
No 34
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=5.3e-35 Score=298.06 Aligned_cols=274 Identities=21% Similarity=0.245 Sum_probs=210.5
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|+.+++||.+...++ .+. ++... ...+++++|||+|++|+|+|..|+++|.+||++++. .+++. +|+++
T Consensus 243 ~p~~p~i~g~~~~~~~--~~~-~~~~~-----~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~ 312 (561)
T PRK13748 243 SPAVPPIPGLKETPYW--TST-EALVS-----DTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAI 312 (561)
T ss_pred CCCCCCCCCCCccceE--ccH-HHhhc-----ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHH
Confidence 5788889997643332 222 22111 124799999999999999999999999999999985 57776 79999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEec
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTG 159 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd~ 159 (356)
++.+.+.|++.||++++++.+++++.+ ++. ..+.+.++ ++++|.|++++|++||+.++ + .++.. ++|+|.||+
T Consensus 313 ~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~ 389 (561)
T PRK13748 313 GEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQ 389 (561)
T ss_pred HHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECC
Confidence 999999999999999999999999763 333 23555444 69999999999999999853 3 33655 568899999
Q ss_pred ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccceE
Q 018416 160 RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVGEV 239 (356)
Q Consensus 160 ~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~ 239 (356)
+|||+.|+|||+|||+..+. .+..|..||+.|+.||++.....++..+|+ ..++++.++++|+++.++
T Consensus 390 ~~~Ts~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~~a~vGlte~~a 457 (561)
T PRK13748 390 GMRTSVPHIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPA--VVFTDPQVATVGYSEAEA 457 (561)
T ss_pred CcccCCCCEEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCe--EEEccCCceeeeCCHHHH
Confidence 99999999999999997653 455788999999999998654344555674 447889999999987543
Q ss_pred EEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCC
Q 018416 240 VHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLG 298 (356)
Q Consensus 240 ~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~ 298 (356)
...| + ....+|.++.+ ++++|||+|++|+.+.+ ++.++.||+.++|++||.++. .
T Consensus 458 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~ 533 (561)
T PRK13748 458 HHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQL----F 533 (561)
T ss_pred HHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccc----c
Confidence 2111 1 01234777655 48999999999988665 577899999999999998877 3
Q ss_pred cccCcCCC
Q 018416 299 FALAVSQK 306 (356)
Q Consensus 299 yap~~~~~ 306 (356)
.+|.+++.
T Consensus 534 ~~Pt~~e~ 541 (561)
T PRK13748 534 PYLTMVEG 541 (561)
T ss_pred cCCchHHH
Confidence 46666654
No 35
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-34 Score=285.82 Aligned_cols=275 Identities=19% Similarity=0.204 Sum_probs=213.1
Q ss_pred CCccCCCCCCC-CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416 4 KLEEFGLSGSD-AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 82 (356)
Q Consensus 4 ~p~~~~ipG~~-~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~ 82 (356)
+|+.+++||.+ .+++++.. ++. +... .+++++|||+|++|+|+|..|++.|.+||++++.+++++. .+++
T Consensus 129 ~~~~p~i~G~~~~~~v~~~~---~~~---~~~~--~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~ 199 (438)
T PRK07251 129 VSNVLPIPGLADSKHVYDST---GIQ---SLET--LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPS 199 (438)
T ss_pred CCCCCCCCCcCCCCcEEchH---HHh---cchh--cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHH
Confidence 57888999973 45666432 222 2222 4789999999999999999999999999999999999987 7999
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh---ccccc-ccCcEEEe
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE---GQLTL-EKGGIKVT 158 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~---~~l~~-~~g~I~vd 158 (356)
+.+.+.+.|+++||++++++++++++. +++.+ .+. .+++++++|.+++++|++|+++.+. ..+.. ++|+|.||
T Consensus 200 ~~~~~~~~l~~~GI~i~~~~~V~~i~~-~~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd 276 (438)
T PRK07251 200 VAALAKQYMEEDGITFLLNAHTTEVKN-DGDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVD 276 (438)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEe-cCCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEEC
Confidence 999999999999999999999999986 33332 233 4577899999999999999987542 23444 56889999
Q ss_pred cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC--CCCCCCCCeEEEEecCceEEEeeccc
Q 018416 159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK--TDKFDYLPFFYSRVFTLSWQFYGDNV 236 (356)
Q Consensus 159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~~~~~~G~~~ 236 (356)
+++||+.|+|||+|||+..+. ....|..+|+.++.++++... ...+..+|+. .++++.++++|+++
T Consensus 277 ~~~~t~~~~IyaiGD~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~ia~vGlte 344 (438)
T PRK07251 277 DYCQTSVPGVFAVGDVNGGPQ----------FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPPLSQVGLTE 344 (438)
T ss_pred CCcccCCCCEEEeeecCCCcc----------cHhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCceEeeeCCH
Confidence 999999999999999987542 355688899999999987642 1244567765 55889999999987
Q ss_pred ceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhc
Q 018416 237 GEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQ 295 (356)
Q Consensus 237 ~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~ 295 (356)
.++...| . .+..+|.++.+ ++++|||+|++|+++.+ ++.++.||++++|++||.+.
T Consensus 345 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~--- 421 (438)
T PRK07251 345 KEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQ--- 421 (438)
T ss_pred HHHHhcCCCeEEEEEECCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcc---
Confidence 6443221 0 01123666554 58999999999988655 67889999999999998774
Q ss_pred CCCcccCcCCC
Q 018416 296 GLGFALAVSQK 306 (356)
Q Consensus 296 ~~~yap~~~~~ 306 (356)
+.++|.+++.
T Consensus 422 -~~~hPt~~e~ 431 (438)
T PRK07251 422 -IFTHPTMAEN 431 (438)
T ss_pred -cccCCChHHH
Confidence 4677887754
No 36
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=100.00 E-value=1e-34 Score=289.25 Aligned_cols=276 Identities=22% Similarity=0.276 Sum_probs=214.1
Q ss_pred CCccCCCC-CCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416 4 KLEEFGLS-GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 82 (356)
Q Consensus 4 ~p~~~~ip-G~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~ 82 (356)
+|+.+++| +.+.+.+ .+.+++..+. ..+++++|||+|++|+|+|..|++.|.+||++++.+++++. ++++
T Consensus 142 ~p~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~ 212 (461)
T TIGR01350 142 RPRSLPGPFDFDGEVV---ITSTGALNLK-----EVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAE 212 (461)
T ss_pred CCCCCCCCCCCCCceE---EcchHHhccc-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHH
Confidence 56666766 3332223 3444554332 14789999999999999999999999999999999999986 8999
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCch--hhhc-cccc-ccCcEE
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS--LFEG-QLTL-EKGGIK 156 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~--l~~~-~l~~-~~g~I~ 156 (356)
+.+.+.+.|+++||++++++++++++.+ ++.+ .+++.+| +++++|.+++++|.+|++. +++. .+.. .+|.|.
T Consensus 213 ~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~ 290 (461)
T TIGR01350 213 VSKVVAKALKKKGVKILTNTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIV 290 (461)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEe
Confidence 9999999999999999999999999863 3333 3555666 5799999999999999998 3443 3555 568899
Q ss_pred EecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEEeecc
Q 018416 157 VTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQFYGDN 235 (356)
Q Consensus 157 vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~~G~~ 235 (356)
||+++||+.|+|||+|||+..+ +++..|..||+.+|++|.+... ..++...| ...+++..++.+|++
T Consensus 291 vd~~l~t~~~~IyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~--~~~~~~~~~a~vG~~ 358 (461)
T TIGR01350 291 VDEYMRTNVPGIYAIGDVIGGP----------MLAHVASHEGIVAAENIAGKEPAPIDYDAVP--SCIYTDPEVASVGLT 358 (461)
T ss_pred eCCCcccCCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCC--eEEecCCceEEEeCC
Confidence 9999999999999999999753 4578899999999999998653 23334455 455678889999987
Q ss_pred cceEEEEc-----------c-------CCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhh
Q 018416 236 VGEVVHYG-----------N-------FSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELET 294 (356)
Q Consensus 236 ~~~~~~~g-----------~-------~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~ 294 (356)
+.++...| + ....+|.++.. ++++|||+|++|+++.+ ++.++.||++++|++||.++
T Consensus 359 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~-- 436 (461)
T TIGR01350 359 EEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKT-- 436 (461)
T ss_pred HHHHHhCCCCeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcC--
Confidence 75332111 1 11123666554 57999999999988655 57889999999999999884
Q ss_pred cCCCcccCcCCC
Q 018416 295 QGLGFALAVSQK 306 (356)
Q Consensus 295 ~~~~yap~~~~~ 306 (356)
+.|+|+|++.
T Consensus 437 --~~~~P~~~e~ 446 (461)
T TIGR01350 437 --IHPHPTLSEA 446 (461)
T ss_pred --cccCCCHHHH
Confidence 5899999876
No 37
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.2e-34 Score=288.55 Aligned_cols=250 Identities=24% Similarity=0.301 Sum_probs=199.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+++++|||+|++|+|+|..|+++|.+||++++.+++++. +|+++.+.+++.|+++ |++++++++++++.+++..+ .
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v-~ 244 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSKE-FKIKLGAKVTSVEKSGDEKV-E 244 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhhc-cEEEcCCEEEEEEEcCCceE-E
Confidence 5799999999999999999999999999999999999986 8999999999999999 99999999999976332122 2
Q ss_pred EEeCCC--cEEecCeEEEecCCCCCchhh--h-ccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccH
Q 018416 118 VNLRDG--NRLPTDMVVVGIGIRPNTSLF--E-GQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHV 191 (356)
Q Consensus 118 v~~~~g--~~i~~D~vi~a~G~~p~~~l~--~-~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~ 191 (356)
+++.++ +++++|.+++++|++||++++ + .++.. ++|.|.||+++||+.|+|||+|||+..+ +++
T Consensus 245 ~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~~IyA~GD~~~~~----------~~~ 314 (460)
T PRK06292 245 ELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVPGIYAAGDVNGKP----------PLL 314 (460)
T ss_pred EEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCCCEEEEEecCCCc----------cch
Confidence 333333 579999999999999999842 3 33555 5688999999999999999999999754 356
Q ss_pred HHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceEE
Q 018416 192 DSARKSAKHAVAAIMEP-DKTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFGA 252 (356)
Q Consensus 192 ~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~~ 252 (356)
..|..||+.||.||++. .....+..+|+.+ ++++.++++|+++.++...| . ....+|.+
T Consensus 315 ~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~--~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k 392 (460)
T PRK06292 315 HEAADEGRIAAENAAGDVAGGVRYHPIPSVV--FTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVK 392 (460)
T ss_pred hHHHHHHHHHHHHhcCCCCCCcCCCCCCeEE--ECCCccEEeECCHHHHHhcCCCeEEEEEecccchHHHhcCCCCeEEE
Confidence 78999999999999984 3234455677533 56788999999876442211 0 11234666
Q ss_pred EEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416 253 YWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 306 (356)
Q Consensus 253 ~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 306 (356)
+.+ ++++|||+|++|+++.+ ++.++.||++++|++||.+.. .++|++++.
T Consensus 393 lv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~ 445 (460)
T PRK06292 393 VYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMP----FYHPTLSEG 445 (460)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----cCCCCHHHH
Confidence 554 57999999999988655 678899999999999998876 467887765
No 38
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=1.7e-34 Score=288.44 Aligned_cols=252 Identities=22% Similarity=0.270 Sum_probs=199.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+++++|||||++|+|+|..|+++|.+||++++.+++++. +|+++.+.+.+.|+++||++++++++++++..+++.+..
T Consensus 179 ~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~ 257 (472)
T PRK05976 179 LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLI 257 (472)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEE
Confidence 4789999999999999999999999999999999999997 899999999999999999999999999997421333434
Q ss_pred EEeCCC--cEEecCeEEEecCCCCCchhhh--c-ccccccCcEEEecccccCCCCEEEEccccccCccccCcccccccHH
Q 018416 118 VNLRDG--NRLPTDMVVVGIGIRPNTSLFE--G-QLTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVD 192 (356)
Q Consensus 118 v~~~~g--~~i~~D~vi~a~G~~p~~~l~~--~-~l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~ 192 (356)
+.+.+| +++++|.+++++|++|+++.+. . .+..++|+|.||++++|+.|+|||+|||+..+ +++.
T Consensus 258 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~ts~~~IyAiGD~~~~~----------~~~~ 327 (472)
T PRK05976 258 VAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYAIGDVIGEP----------QLAH 327 (472)
T ss_pred EEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCcccCCCCEEEeeecCCCc----------ccHH
Confidence 445566 3699999999999999997532 2 23345688999999999999999999998643 4577
Q ss_pred HHHHHHHHHHHHHcCCC-CCCCCCCCCeEEEEecCceEEEeecccceEEEEc-----------c-------CCCCceEEE
Q 018416 193 SARKSAKHAVAAIMEPD-KTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYG-----------N-------FSGTTFGAY 253 (356)
Q Consensus 193 ~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g-----------~-------~~~~~~~~~ 253 (356)
.|..||+.|+.+|+|.. ...++..+|. ..++++.++.+|+++.++...| . ....+|.++
T Consensus 328 ~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl 405 (472)
T PRK05976 328 VAMAEGEMAAEHIAGKKPRPFDYAAIPA--CCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKV 405 (472)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCCE--EEECcCceEEEeCCHHHHHHcCCCEEEEEEECCcchhhhhcCCCceEEEE
Confidence 89999999999999864 2233444554 4578899999999875432111 0 111336665
Q ss_pred Ee--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416 254 WV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQK 306 (356)
Q Consensus 254 ~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~ 306 (356)
.. ++++|||+|++|+.+.+ ++.++.||+.++|++||.++. .++|.+++.
T Consensus 406 i~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~----~~hPt~~e~ 457 (472)
T PRK05976 406 VADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTI----HPHPTLSEA 457 (472)
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCc----ccCCChHHH
Confidence 54 57999999999988665 578999999999999998876 557777664
No 39
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=100.00 E-value=2.5e-33 Score=272.37 Aligned_cols=252 Identities=21% Similarity=0.291 Sum_probs=207.8
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+|..+++||.+. +++++++.++.++++.+. .+++++|||+|++|+|+|..|.++|.+||++++.++++++.+++++
T Consensus 110 ~~~~p~i~G~~~--v~~~~~~~~~~~~~~~~~--~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~ 185 (377)
T PRK04965 110 SAFVPPIPGREL--MLTLNSQQEYRAAETQLR--DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEV 185 (377)
T ss_pred CCCCCCCCCCce--EEEECCHHHHHHHHHHhh--cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHH
Confidence 577788999764 999999999999888775 5789999999999999999999999999999999999988789999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEEecccc
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKVTGRLQ 162 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~vd~~l~ 162 (356)
...+.+.|++.||++++++++++++.+ ++. ..+.+.+|+++++|.||+|+|.+|++.+++.. +..++ +|.||++||
T Consensus 186 ~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ 262 (377)
T PRK04965 186 SSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQ 262 (377)
T ss_pred HHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcc
Confidence 999999999999999999999999863 222 35778899999999999999999999987654 55544 599999999
Q ss_pred cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCC-CCeEEEEecCceEEEeecccceE--
Q 018416 163 SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDY-LPFFYSRVFTLSWQFYGDNVGEV-- 239 (356)
Q Consensus 163 ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~-~p~~~~~~~~~~~~~~G~~~~~~-- 239 (356)
|++|+|||+|||++.+.. ..+.++.|.+||+.+|.||+|... .|.. .+....+++++++.++|...++.
T Consensus 263 ts~~~VyA~GD~a~~~~~------~~~~~~~a~~~g~~~a~n~~g~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 334 (377)
T PRK04965 263 TSAPDIYALGDCAEINGQ------VLPFLQPIQLSAMALAKNLLGQNT--PLKLPAMLVKVKTPELPLQLAGETQRQDLR 334 (377)
T ss_pred cCCCCEEEeeecEeECCc------eeehHHHHHHHHHHHHHHhcCCCc--ccccCCccEEEecCceeeEECCCCCCCCce
Confidence 999999999999987532 235678899999999999999763 3433 33355678999999999765321
Q ss_pred EEEccCCCCceEEEEeeCCeEEEEEEeCCCH
Q 018416 240 VHYGNFSGTTFGAYWVNKGRLVGSFLEGGTK 270 (356)
Q Consensus 240 ~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~ 270 (356)
...-+.++..|.+++.++|+|+|+.++|+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~ 365 (377)
T PRK04965 335 WQINAESQGMVAKGVDEAGQLRAFVVSEDRM 365 (377)
T ss_pred EEEEeCCCCeEEEEEccCCcEEEEEEEChhH
Confidence 1112223334888888999999999999753
No 40
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=7.7e-34 Score=284.96 Aligned_cols=274 Identities=18% Similarity=0.260 Sum_probs=208.9
Q ss_pred CCccC-CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416 4 KLEEF-GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 82 (356)
Q Consensus 4 ~p~~~-~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~ 82 (356)
+|+.+ ++||.+. ..+ +.+++..+. ..+++++|||+|++|+|+|..|+++|.+||++++ +.+++. +|++
T Consensus 155 ~p~~p~~i~G~~~-~~~---~~~~~~~~~-----~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~-~d~~ 223 (499)
T PTZ00052 155 RPSIPEDVPGAKE-YSI---TSDDIFSLS-----KDPGKTLIVGASYIGLETAGFLNELGFDVTVAVR-SIPLRG-FDRQ 223 (499)
T ss_pred CCCCCCCCCCccc-eee---cHHHHhhhh-----cCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc-Cccccc-CCHH
Confidence 45555 4888642 222 334443321 1468999999999999999999999999999987 467775 8999
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh--c-cccc-ccCcEEEe
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE--G-QLTL-EKGGIKVT 158 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~--~-~l~~-~~g~I~vd 158 (356)
+++.+++.|+++||++++++.+++++..+ +. ..+.+.+|+++++|.|++++|++||++++. . ++.. .+|.+.++
T Consensus 224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~ 301 (499)
T PTZ00052 224 CSEKVVEYMKEQGTLFLEGVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAP 301 (499)
T ss_pred HHHHHHHHHHHcCCEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeC
Confidence 99999999999999999999999997633 32 356778888999999999999999999753 2 3555 56777777
Q ss_pred cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCC-CCCCCCCeEEEEecCceEEEeecccc
Q 018416 159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKT-DKFDYLPFFYSRVFTLSWQFYGDNVG 237 (356)
Q Consensus 159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~~p~~~~~~~~~~~~~~G~~~~ 237 (356)
+. +|+.|+|||+|||+.... .++..|.+||+.+|.||++.... ..+..+|+.+ +.++.++++|+++.
T Consensus 302 ~~-~Ts~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~i--ft~p~ia~vGlte~ 369 (499)
T PTZ00052 302 ND-CTNIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTI--FTPIEYGACGYSSE 369 (499)
T ss_pred CC-cCCCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEE--ecCCcceeecCCHH
Confidence 77 999999999999996321 35778999999999999985432 3455677655 45778999998875
Q ss_pred eEEEE-c------------c-------C---------------CCCceEEEEe--e-CCeEEEEEEeCCCHHHH-HHHHH
Q 018416 238 EVVHY-G------------N-------F---------------SGTTFGAYWV--N-KGRLVGSFLEGGTKEEY-EAIAK 278 (356)
Q Consensus 238 ~~~~~-g------------~-------~---------------~~~~~~~~~~--~-~g~ilGa~~vg~~~~~~-~~~a~ 278 (356)
++... + . . +..+|.++.. + +++|||+|++|+++.++ +.++.
T Consensus 370 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ 449 (499)
T PTZ00052 370 AAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSL 449 (499)
T ss_pred HHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHH
Confidence 43211 0 0 0 0234766654 2 69999999999987765 67899
Q ss_pred HHHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416 279 ATRLQPVVEDLAELETQGLGFALAVSQK 306 (356)
Q Consensus 279 ai~~~~~~~dl~~l~~~~~~yap~~~~~ 306 (356)
||++++|++||.++. ..+|.+++.
T Consensus 450 ai~~~~t~~~l~~~~----~~hPt~sE~ 473 (499)
T PTZ00052 450 ALKLGAKKSDFDSMI----GIHPTDAEV 473 (499)
T ss_pred HHHCCCCHHHHhccc----ccCCCCchh
Confidence 999999999998876 456777764
No 41
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1e-32 Score=255.23 Aligned_cols=274 Identities=22% Similarity=0.305 Sum_probs=214.9
Q ss_pred ccCCCCCCCC--CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHH
Q 018416 6 EEFGLSGSDA--ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKI 83 (356)
Q Consensus 6 ~~~~ipG~~~--~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~ 83 (356)
+..++||.+. +.+. |-+.|..+.+ -|++++|||+|+||+|++.-..++|.+||++|-.+++.+. +|.|+
T Consensus 184 eV~~~PGI~IDekkIV---SStgALsL~~-----vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Ei 254 (506)
T KOG1335|consen 184 EVTPFPGITIDEKKIV---SSTGALSLKE-----VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEI 254 (506)
T ss_pred ccCCCCCeEecCceEE---ecCCccchhh-----CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHH
Confidence 4567788643 3333 2223444422 4899999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--cEEecCeEEEecCCCCCchhh---hccccc-ccCc
Q 018416 84 ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGG 154 (356)
Q Consensus 84 ~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~l~---~~~l~~-~~g~ 154 (356)
+...++.|+++|++|+++++++..+.+.||.+ .+++.+ + ++++||.+++++|++|-+.-+ +-++.. .+++
T Consensus 255 sk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~r 333 (506)
T KOG1335|consen 255 SKAFQRVLQKQGIKFKLGTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGR 333 (506)
T ss_pred HHHHHHHHHhcCceeEeccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccc
Confidence 99999999999999999999999998778744 444432 2 469999999999999998733 334544 6789
Q ss_pred EEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeec
Q 018416 155 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGD 234 (356)
Q Consensus 155 I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~ 234 (356)
|.||.+++|.+|+||+||||...|+ ++..|..||..+.+.|.+......|..+|...+.... ++.+|.
T Consensus 334 v~v~~~f~t~vP~i~~IGDv~~gpM----------LAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPE--vawVG~ 401 (506)
T KOG1335|consen 334 VIVNTRFQTKVPHIYAIGDVTLGPM----------LAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPE--VAWVGK 401 (506)
T ss_pred eeccccccccCCceEEecccCCcch----------hhhhhhhhchhheeeecccCcccccCCCCceeecccc--eeeecc
Confidence 9999999999999999999998875 4667889999999999988755788889977665544 577788
Q ss_pred ccceEEE------Ec------------cCCCCceEEEE--eeCCeEEEEEEeCCCHHHH-HHHHHHHHcCCCcCcHHHHh
Q 018416 235 NVGEVVH------YG------------NFSGTTFGAYW--VNKGRLVGSFLEGGTKEEY-EAIAKATRLQPVVEDLAELE 293 (356)
Q Consensus 235 ~~~~~~~------~g------------~~~~~~~~~~~--~~~g~ilGa~~vg~~~~~~-~~~a~ai~~~~~~~dl~~l~ 293 (356)
++.++.. .| +.+..+|.++. .+++||||+|++|+.+.++ ...+.||..|.+.+|+++..
T Consensus 402 TEeqlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvc 481 (506)
T KOG1335|consen 402 TEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVC 481 (506)
T ss_pred chhhHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhcc
Confidence 8754321 11 12223476654 4799999999999998776 45689999999999999887
Q ss_pred hcCCCccc
Q 018416 294 TQGLGFAL 301 (356)
Q Consensus 294 ~~~~~yap 301 (356)
.++...+.
T Consensus 482 haHPTlSE 489 (506)
T KOG1335|consen 482 HAHPTLSE 489 (506)
T ss_pred CCCCcHHH
Confidence 44433333
No 42
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=4.2e-32 Score=248.42 Aligned_cols=254 Identities=17% Similarity=0.228 Sum_probs=202.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.|||++|||+|+|++|+|..++.+|.+++++.|.+.+|.. ||+.++..+.+.|+.+||++|++++++++....+|....
T Consensus 188 ~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~-FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~ 266 (478)
T KOG0405|consen 188 QPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRG-FDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELV 266 (478)
T ss_pred cCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcc-hhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEE
Confidence 5899999999999999999999999999999999999998 899999999999999999999999999998877775443
Q ss_pred EEeCCCcEEecCeEEEecCCCCCchhh---hccccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHH
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDS 193 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~l~---~~~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~ 193 (356)
+ ...|..-.+|.++|++|+.||+.-+ +-++++ .+|.|.||+|.+||+|+||++||++.... +...
T Consensus 267 i-~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~----------LTPV 335 (478)
T KOG0405|consen 267 I-TSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKIN----------LTPV 335 (478)
T ss_pred E-EeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCceEEeccccCcEe----------cchH
Confidence 3 3455555699999999999999733 344666 78999999999999999999999987543 4457
Q ss_pred HHHHHHHHHHHHcCCC--CCCCCCCCCeEEEEecCceEEEeecccceEEEEccCC-----------------C---CceE
Q 018416 194 ARKSAKHAVAAIMEPD--KTDKFDYLPFFYSRVFTLSWQFYGDNVGEVVHYGNFS-----------------G---TTFG 251 (356)
Q Consensus 194 A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~~~~~~G~~~~~~~~~g~~~-----------------~---~~~~ 251 (356)
|+..|+..++.+++.. ...+|..+|+.++... ++..+|+++.|++.....+ + ....
T Consensus 336 Aiaagr~la~rlF~~~~~~kldY~nVp~vVFshP--~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~m 413 (478)
T KOG0405|consen 336 AIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHP--PIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLM 413 (478)
T ss_pred HHhhhhhHHHHhhcCCCCCccccccCceEEEecC--CcccccCCHHHHHHHhCccceEEEecCCchhHhHhhcCCcceEE
Confidence 8889999999999843 2357888997655433 4678899987764321100 0 1123
Q ss_pred EEEe--eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCcCcHHHHhhcCCCcccCcCCCCCC
Q 018416 252 AYWV--NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVVEDLAELETQGLGFALAVSQKPLP 309 (356)
Q Consensus 252 ~~~~--~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~~dl~~l~~~~~~yap~~~~~~~~ 309 (356)
++.+ ++.+++|++++|....| ++-++.|+++|.|-.|+.... +.+|.-++.-+.
T Consensus 414 Klvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tV----aIHPTSAEElVT 470 (478)
T KOG0405|consen 414 KLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTV----AIHPTSAEELVT 470 (478)
T ss_pred EEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccce----eecCCCHHHhee
Confidence 3333 78999999999987655 578999999999998876544 667766555333
No 43
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.96 E-value=6.3e-29 Score=238.63 Aligned_cols=195 Identities=28% Similarity=0.410 Sum_probs=166.8
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc-------CCC----CcEEEECCchHHHHHHHHHHHC-----------
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-------CSG----GNAVVIGGGYIGMECAASLVIN----------- 61 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-------~~~----~~vvVvGgG~iGlE~A~~L~~~----------- 61 (356)
+++.+++||.. ++.+.+++++||.+++..+.. .+. .+++|+|||+.|+|+|.+|+.+
T Consensus 110 ~~~~fgi~G~~-E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~ 188 (405)
T COG1252 110 ETNYFGIPGAA-EYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVD 188 (405)
T ss_pred cCCcCCCCCHH-HhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCC
Confidence 57899999984 799999999999999988751 112 2699999999999999999864
Q ss_pred --CCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecCCC
Q 018416 62 --KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIR 138 (356)
Q Consensus 62 --G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~ 138 (356)
..+|++|+++|++||. +++++++..++.|+++||++++++.|+++++ + .+++++|+ +|++|++||++|.+
T Consensus 189 ~~~~~V~LVea~p~ILp~-~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~----~v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 189 PSELRVILVEAGPRILPM-FPPKLSKYAERALEKLGVEVLLGTPVTEVTP--D----GVTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred ccccEEEEEccCchhccC-CCHHHHHHHHHHHHHCCCEEEcCCceEEECC--C----cEEEccCCeeEecCEEEEcCCCc
Confidence 1389999999999998 9999999999999999999999999999975 2 47778887 59999999999999
Q ss_pred CCchhhh-ccccc-ccCcEEEeccccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC
Q 018416 139 PNTSLFE-GQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK 210 (356)
Q Consensus 139 p~~~l~~-~~l~~-~~g~I~vd~~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~ 210 (356)
++...-+ ..++. ..|++.||++||+ ++|+|||+|||+...+. ...++.++.|++||+.+|+||.....
T Consensus 262 a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~----~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 262 ASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP----RPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred CChhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC----CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 9887655 34555 4699999999998 89999999999998764 23457889999999999999986553
No 44
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.8e-28 Score=223.84 Aligned_cols=280 Identities=20% Similarity=0.246 Sum_probs=209.0
Q ss_pred CCCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416 3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 82 (356)
Q Consensus 3 ~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~ 82 (356)
.+|++++|||.- +...|-. | +-+.- . .|.+-+|||+|++++|||.+|+-.|.+||+..|+ -++.. ||.+
T Consensus 171 ~RPrYp~IpG~~-Ey~ITSD---D---lFsl~-~-~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrG-FDqd 239 (503)
T KOG4716|consen 171 LRPRYPDIPGAK-EYGITSD---D---LFSLP-Y-EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRG-FDQD 239 (503)
T ss_pred CCCCCCCCCCce-eeeeccc---c---ccccc-C-CCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eeccc-ccHH
Confidence 589999999963 3223211 2 21211 1 4678899999999999999999999999999986 34444 9999
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCc--EEecCeEEEecCCCCCchhh---hccccc--cc
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGIRPNTSLF---EGQLTL--EK 152 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~~p~~~l~---~~~l~~--~~ 152 (356)
|++.+.+.|+++||+|...+.+++++.-++|+.. |.. ..++ +-++|.|+||+|+.+.++-+ ..+++. ..
T Consensus 240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~-v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks 318 (503)
T KOG4716|consen 240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKLR-VFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKS 318 (503)
T ss_pred HHHHHHHHHHHhCCceeecccceeeeeccCCcEE-EEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccC
Confidence 9999999999999999999888888876777643 222 2222 35799999999999998733 334555 56
Q ss_pred CcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCC-CCCCCCCCeEEEEecCceEEE
Q 018416 153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDK-TDKFDYLPFFYSRVFTLSWQF 231 (356)
Q Consensus 153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~~~~~ 231 (356)
+.|.||+.-+||+|+|||+||+.+... ++...|++.||..|+.+.+... ..+|..+|+.. +..+....
T Consensus 319 ~KI~v~~~e~t~vp~vyAvGDIl~~kp---------ELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTV--FTPLEy~c 387 (503)
T KOG4716|consen 319 GKIPVDDEEATNVPYVYAVGDILEDKP---------ELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTV--FTPLEYGC 387 (503)
T ss_pred CccccChHHhcCCCceEEecceecCCc---------ccchhhhhhchHHHHHHhcCcceeeeccCCceee--ecchhccc
Confidence 889999999999999999999998643 4556799999999999998654 25777788633 34567788
Q ss_pred eecccceEEEE-c-------------------cCCCCc-eEEEEe---eCCeEEEEEEeCCCHHH-HHHHHHHHHcCCCc
Q 018416 232 YGDNVGEVVHY-G-------------------NFSGTT-FGAYWV---NKGRLVGSFLEGGTKEE-YEAIAKATRLQPVV 286 (356)
Q Consensus 232 ~G~~~~~~~~~-g-------------------~~~~~~-~~~~~~---~~g~ilGa~~vg~~~~~-~~~~a~ai~~~~~~ 286 (356)
+|+++.+++.. | ..+... |.+... .+.||+|.|++||.+.| ++-++.|++.|+|.
T Consensus 388 ~GlsEE~Ai~k~g~dnievfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~ 467 (503)
T KOG4716|consen 388 VGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTK 467 (503)
T ss_pred cCCCHHHHHHHhCcccEEEeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccH
Confidence 99988654321 1 011111 544432 57899999999999776 47799999999999
Q ss_pred CcHHHHhhcCCCcccCcCC
Q 018416 287 EDLAELETQGLGFALAVSQ 305 (356)
Q Consensus 287 ~dl~~l~~~~~~yap~~~~ 305 (356)
.||.++...+...+..|.+
T Consensus 468 ~~l~ntigIHPt~aE~Ft~ 486 (503)
T KOG4716|consen 468 KDLDNTIGIHPTTAEEFTT 486 (503)
T ss_pred HHHhhcccccccchhheeE
Confidence 9999888555555544443
No 45
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.95 E-value=2.6e-27 Score=233.57 Aligned_cols=192 Identities=23% Similarity=0.363 Sum_probs=161.5
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcC---------------CCCcEEEECCchHHHHHHHHHHH--------
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVI-------- 60 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~---------------~~~~vvVvGgG~iGlE~A~~L~~-------- 60 (356)
+|+.+++||.+ ++++++++++++.++++.+.+. ..++++|||||++|+|+|..|+.
T Consensus 124 ~~~~~~ipG~~-e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~ 202 (424)
T PTZ00318 124 RPNTFNIPGVE-ERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRN 202 (424)
T ss_pred ccCCCCCCCHH-HcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHh
Confidence 46778999986 5789999999999988776421 12489999999999999999986
Q ss_pred ------CCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEe
Q 018416 61 ------NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 134 (356)
Q Consensus 61 ------~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a 134 (356)
.+.+||++++++++++. +++++.+.+++.|+++||+++++++++++.. + .+.+++|+++++|++|++
T Consensus 203 ~~~~~~~~~~Vtlv~~~~~ll~~-~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~--~----~v~~~~g~~i~~d~vi~~ 275 (424)
T PTZ00318 203 LNPELVEECKVTVLEAGSEVLGS-FDQALRKYGQRRLRRLGVDIRTKTAVKEVLD--K----EVVLKDGEVIPTGLVVWS 275 (424)
T ss_pred hhhcccccCEEEEEcCCCccccc-CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeC--C----EEEECCCCEEEccEEEEc
Confidence 37899999999999986 8999999999999999999999999999964 2 366889999999999999
Q ss_pred cCCCCCchhhhc-cccc-ccCcEEEecccc-cCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416 135 IGIRPNTSLFEG-QLTL-EKGGIKVTGRLQ-SSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 209 (356)
Q Consensus 135 ~G~~p~~~l~~~-~l~~-~~g~I~vd~~l~-ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 209 (356)
+|.+|+. +++. .+.. ++|+|.||++|| |++|+|||+|||+..+.. ...+.+..|++||+.+|.||.+..
T Consensus 276 ~G~~~~~-~~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~-----~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 276 TGVGPGP-LTKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEER-----PLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred cCCCCcc-hhhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCC-----CCCCchHHHHHHHHHHHHHHHHHh
Confidence 9999985 4443 3555 578999999999 599999999999986431 123578899999999999998654
No 46
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.94 E-value=8.9e-25 Score=213.32 Aligned_cols=281 Identities=28% Similarity=0.288 Sum_probs=225.3
Q ss_pred CCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC-HHHHHHHHHH
Q 018416 12 GSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT-PKIASYYEEY 90 (356)
Q Consensus 12 G~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d-~~~~~~~~~~ 90 (356)
+...++++++++.+++.+++.... ..++++|+|+|++|+|+|..++++|++||+++..+++++. +. +++.+.+.+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~-~~~~~~~~~~~~~ 187 (415)
T COG0446 111 ISDWEGVVTLRLREDAEALKGGAE--PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQ-LLDPEVAEELAEL 187 (415)
T ss_pred ccccCceEEECCHHHHHHHHHHHh--ccCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchh-hhhHHHHHHHHHH
Confidence 566778999999999999998876 3689999999999999999999999999999999999997 45 9999999999
Q ss_pred HHhCCCEEEeCCeeeEEEEcCCCcEEE-EEeCCCcEEecCeEEEecCCCCCchhhhccc--cc-ccCcEEEecccccC-C
Q 018416 91 YKSKGVKFVKGTVLSSFDVDSNGKVVA-VNLRDGNRLPTDMVVVGIGIRPNTSLFEGQL--TL-EKGGIKVTGRLQSS-N 165 (356)
Q Consensus 91 l~~~GV~v~~~~~v~~i~~~~~g~v~~-v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l--~~-~~g~I~vd~~l~ts-~ 165 (356)
|+++||+++++..+.+++...+..... +...++..+++|++++++|.+||+.+.+... .. .+|.|.||++++|+ .
T Consensus 188 l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~ 267 (415)
T COG0446 188 LEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKD 267 (415)
T ss_pred HHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCC
Confidence 999999999999999998633221111 5677889999999999999999988888764 33 66789999999997 9
Q ss_pred CCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecCceEEEeecccc-eE-----
Q 018416 166 SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFTLSWQFYGDNVG-EV----- 239 (356)
Q Consensus 166 ~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~~~~~~G~~~~-~~----- 239 (356)
++|||+|||+..+...++.....++++.|..+++.++.++.+. . .....+++.+.+.++.....+|.+.. +.
T Consensus 268 ~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 345 (415)
T COG0446 268 PDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGA-L-RIPGLLGTVISDVGDLCAASTGLTEGKERGIDVV 345 (415)
T ss_pred CCEEeccceEeeecccCCceeeeechhhHhhhhHHHHHHhccc-c-ccccccCceEEEEcCeEEEEecCCcccccceeee
Confidence 9999999999988766555566889999999999999999876 2 45567899999999999999998875 21
Q ss_pred --EEEccCC------CCc--eEE--EEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhcCCCccc
Q 018416 240 --VHYGNFS------GTT--FGA--YWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQGLGFAL 301 (356)
Q Consensus 240 --~~~g~~~------~~~--~~~--~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~~~~yap 301 (356)
...+... ... ..+ +..++++++|+|. -.....+..+..++..+.++.++..++ +.|+|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 415 (415)
T COG0446 346 LVVSGGKDPRAHLYPGAELVGIKLVGDADTGRILGGQE-LEVLKRIGALALAIGLGDTVAELDALD---AIYAP 415 (415)
T ss_pred EEEeccCcccccccCCCCeEEEEEEEcCcccceehhhh-HHHHhhhhhhhhhhhhcCchhhhhhcc---cccCC
Confidence 1111110 011 111 2246788888887 222335677888889899888887766 66654
No 47
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.93 E-value=1.6e-24 Score=209.43 Aligned_cols=192 Identities=25% Similarity=0.297 Sum_probs=157.5
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc-----CCCCcEEEECCchHHHHHHHHHHH----CC--CcEEEEeeCC
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-----CSGGNAVVIGGGYIGMECAASLVI----NK--INVTMVFPEA 72 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-----~~~~~vvVvGgG~iGlE~A~~L~~----~G--~~Vtlv~~~~ 72 (356)
+|+.+++||. .++++++++++++.++.+.+.. ..+++++|||+|++|+|+|..|++ +| .+||++ ..+
T Consensus 106 ~~~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~ 183 (364)
T TIGR03169 106 TTPLSGVEGA-ADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGA 183 (364)
T ss_pred CCCCCCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCC
Confidence 5778899994 5889999999998884433321 135799999999999999999985 34 589999 677
Q ss_pred ccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhccccc-c
Q 018416 73 HCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-E 151 (356)
Q Consensus 73 ~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~ 151 (356)
.+++. +++++...+++.|+++||++++++.+++++. + .+.+.+|+++++|.+++++|.+|++.+...++.. .
T Consensus 184 ~~l~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~~~~ 256 (364)
T TIGR03169 184 SLLPG-FPAKVRRLVLRLLARRGIEVHEGAPVTRGPD---G---ALILADGRTLPADAILWATGARAPPWLAESGLPLDE 256 (364)
T ss_pred ccccc-CCHHHHHHHHHHHHHCCCEEEeCCeeEEEcC---C---eEEeCCCCEEecCEEEEccCCChhhHHHHcCCCcCC
Confidence 78876 8999999999999999999999999999853 2 4667889999999999999999997766555655 5
Q ss_pred cCcEEEeccccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416 152 KGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 209 (356)
Q Consensus 152 ~g~I~vd~~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 209 (356)
+|+|.||+++|| ++|+|||+|||+..+... ....+..|++||+.+|.||....
T Consensus 257 ~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~-----~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 257 DGFLRVDPTLQSLSHPHVFAAGDCAVITDAP-----RPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred CCeEEECCccccCCCCCEEEeeeeeecCCCC-----CCCchHHHHHhHHHHHHHHHHHh
Confidence 789999999998 999999999999865321 12456789999999999997543
No 48
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.93 E-value=1.3e-24 Score=215.81 Aligned_cols=188 Identities=25% Similarity=0.275 Sum_probs=147.0
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHh-------cCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMK-------SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~-------~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
+|+.+++||.+.++|++..++.+...+....+ ...+++|+|||+|++|+|+|..|.++|.+||+++++++...
T Consensus 230 ~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~ 309 (449)
T TIGR01316 230 LPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDM 309 (449)
T ss_pred CCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccC
Confidence 58889999999999997766554433322110 12578999999999999999999999999999999865221
Q ss_pred ccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---------CC-----------cEEecCeEEEecC
Q 018416 77 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGIG 136 (356)
Q Consensus 77 ~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~a~G 136 (356)
. .. ....+.+++.||++++++.++++..+++|++..+++. +| +++++|.||+++|
T Consensus 310 ~-~~----~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG 384 (449)
T TIGR01316 310 T-AR----VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG 384 (449)
T ss_pred C-CC----HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCC
Confidence 1 12 2223567889999999999999986556766555543 23 2699999999999
Q ss_pred CCCCchhhhcc-ccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 137 IRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 137 ~~p~~~l~~~~-l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
..|++.+++.. +.. .+|+|.||++++||.|+|||+|||+..+ .++..|+.+|+.||.+|.
T Consensus 385 ~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~----------~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 385 NGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGA----------ATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred CCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCc----------HHHHHHHHHHHHHHHHHH
Confidence 99999887654 655 5688999999999999999999998644 357789999999999985
No 49
>PRK10262 thioredoxin reductase; Provisional
Probab=99.91 E-value=7.8e-24 Score=201.38 Aligned_cols=183 Identities=24% Similarity=0.277 Sum_probs=142.5
Q ss_pred CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416 4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80 (356)
Q Consensus 4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d 80 (356)
.|+.+++||.+ ..+++.....+. .. ..+++++|||+|++|+|+|..|++.+.+||++++.+.+. .+
T Consensus 116 ~~~~~~i~g~~~~~~~~v~~~~~~~~------~~--~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~ 184 (321)
T PRK10262 116 SARYLGLPSEEAFKGRGVSACATCDG------FF--YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AE 184 (321)
T ss_pred CCCCCCCCCHHHcCCCcEEEeecCCH------HH--cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CC
Confidence 46778899864 234444433222 11 258999999999999999999999999999999988752 46
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC------cEEecCeEEEecCCCCCchhhhcccccccCc
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG------NRLPTDMVVVGIGIRPNTSLFEGQLTLEKGG 154 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g------~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~ 154 (356)
+.+.+.+.+.|++.||++++++.+++++. +++.+..+++.++ +++++|.|++++|++||+.+++..+.+++|+
T Consensus 185 ~~~~~~~~~~l~~~gV~i~~~~~v~~v~~-~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~l~~~~g~ 263 (321)
T PRK10262 185 KILIKRLMDKVENGNIILHTNRTLEEVTG-DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGY 263 (321)
T ss_pred HHHHHHHHhhccCCCeEEEeCCEEEEEEc-CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhccccccCCE
Confidence 77888899999999999999999999986 3334445555432 4799999999999999999887666667789
Q ss_pred EEEec-----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 155 IKVTG-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 155 I~vd~-----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
|.||+ +++|++|+|||+|||+.... ..+..|+.+|..||..|..
T Consensus 264 i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~---------~~~~~A~~~g~~Aa~~~~~ 312 (321)
T PRK10262 264 IKVQSGIHGNATQTSIPGVFAAGDVMDHIY---------RQAITSAGTGCMAALDAER 312 (321)
T ss_pred EEECCCCcccccccCCCCEEECeeccCCCc---------ceEEEEehhHHHHHHHHHH
Confidence 99997 78999999999999997532 1233477788888877643
No 50
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=99.91 E-value=7e-24 Score=198.36 Aligned_cols=270 Identities=25% Similarity=0.408 Sum_probs=214.3
Q ss_pred CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC----CCcEEEEeeCCccCCccCCHHHHHHHHHH
Q 018416 15 AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCMARLFTPKIASYYEEY 90 (356)
Q Consensus 15 ~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~----G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~ 90 (356)
...+.++|.+.|..++...+.+ .+++.|||+|++|.|+|+.|.+. |.+|+-+......|...+++.+++.-.+.
T Consensus 325 k~kit~fr~p~DF~rlek~~ae--k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ek 402 (659)
T KOG1346|consen 325 KQKITYFRYPADFKRLEKGLAE--KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEK 402 (659)
T ss_pred hhheeEEecchHHHHHHHhhhh--cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHH
Confidence 3578899999999999998874 48999999999999999999874 78898888888888888899999999999
Q ss_pred HHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc-ccc--ccCcEEEecccccCCCC
Q 018416 91 YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ-LTL--EKGGIKVTGRLQSSNSS 167 (356)
Q Consensus 91 l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~--~~g~I~vd~~l~ts~~~ 167 (356)
+++.||.++.+..|.++..+ .+. ..++++||.++.+|.|++|+|-.||+++++.+ ++. .-|++.||..++. -.|
T Consensus 403 ir~~GV~V~pna~v~sv~~~-~~n-l~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~a-r~N 479 (659)
T KOG1346|consen 403 IRKGGVDVRPNAKVESVRKC-CKN-LVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKA-REN 479 (659)
T ss_pred HHhcCceeccchhhhhhhhh-ccc-eEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeec-ccc
Confidence 99999999999999998763 333 45889999999999999999999999999876 665 4489999999887 478
Q ss_pred EEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEEEecC-ceEEEeecccc---------
Q 018416 168 VYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFYSRVFT-LSWQFYGDNVG--------- 237 (356)
Q Consensus 168 VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~-~~~~~~G~~~~--------- 237 (356)
||++||++.+.+.+.|. +++.|+.+|.-.||.|+.||.|.. .+|.....||+.... +.+..+|+-..
T Consensus 480 vwvAGdaacF~D~~LGr-RRVehhdhavvSGRLAGENMtgAa--kpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA 556 (659)
T KOG1346|consen 480 VWVAGDAACFEDGVLGR-RRVEHHDHAVVSGRLAGENMTGAA--KPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFA 556 (659)
T ss_pred eeeecchhhhhcccccc-eeccccccceeeceeccccccccc--CCccccceeeeccCcccccceeeecccCCCcceeee
Confidence 99999999999887775 567899999999999999999876 467777788875432 22333342110
Q ss_pred ---------eEEEE--------------------c--------cCC-CCceE---EEEeeCCeEEEEEEeCCCHHHHHHH
Q 018416 238 ---------EVVHY--------------------G--------NFS-GTTFG---AYWVNKGRLVGSFLEGGTKEEYEAI 276 (356)
Q Consensus 238 ---------~~~~~--------------------g--------~~~-~~~~~---~~~~~~g~ilGa~~vg~~~~~~~~~ 276 (356)
++-.. + ++. ...|+ .||++|++|+|..+++- =.++...
T Consensus 557 ~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilLwN~-Fnr~~~A 635 (659)
T KOG1346|consen 557 LPSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILLWNL-FNRIGLA 635 (659)
T ss_pred ccccccchhhhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEehhh-hccchhh
Confidence 00000 0 011 11253 37889999999999873 2367777
Q ss_pred HHHHHcCCCcCcHHHHh
Q 018416 277 AKATRLQPVVEDLAELE 293 (356)
Q Consensus 277 a~ai~~~~~~~dl~~l~ 293 (356)
.+.|..+...+||.+..
T Consensus 636 R~II~d~kk~ddlnEvA 652 (659)
T KOG1346|consen 636 RTIINDNKKYDDLNEVA 652 (659)
T ss_pred HHHhccccchhhHHHHH
Confidence 88899999999987765
No 51
>PRK12831 putative oxidoreductase; Provisional
Probab=99.91 E-value=4.2e-23 Score=205.53 Aligned_cols=188 Identities=23% Similarity=0.280 Sum_probs=145.1
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHH------hcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-cCC
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH-CMA 76 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~-~l~ 76 (356)
+|+.+++||.+.++|++..++.+...+.... ....+++|+|||+|++|+|+|..|.++|.+||++.+++. -++
T Consensus 240 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~ 319 (464)
T PRK12831 240 LPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELP 319 (464)
T ss_pred CCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCC
Confidence 6889999999999999877665543322110 012579999999999999999999999999999998764 233
Q ss_pred ccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC------------------CCc--EEecCeEEEecC
Q 018416 77 RLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------------------DGN--RLPTDMVVVGIG 136 (356)
Q Consensus 77 ~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~------------------~g~--~i~~D~vi~a~G 136 (356)
. ...+ .+.+++.||++++++.++++..+++|++..+++. +|+ ++++|.||+++|
T Consensus 320 a-~~~e-----~~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG 393 (464)
T PRK12831 320 A-RVEE-----VHHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLG 393 (464)
T ss_pred C-CHHH-----HHHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCC
Confidence 2 1111 1345678999999999999986556766555442 222 699999999999
Q ss_pred CCCCchhhhc--cccc-ccCcEEEecc-cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 137 IRPNTSLFEG--QLTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 137 ~~p~~~l~~~--~l~~-~~g~I~vd~~-l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
..|++.++.. ++.. .+|.|.||++ ++||.|+|||+|||+..+ ..+..|+.+|+.||.+|..
T Consensus 394 ~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~----------~~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 394 TSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGA----------ATVILAMGAGKKAAKAIDE 458 (464)
T ss_pred CCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 9999988764 3555 5688999998 999999999999998754 3467899999999999853
No 52
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.89 E-value=1.6e-22 Score=204.13 Aligned_cols=179 Identities=26% Similarity=0.393 Sum_probs=138.3
Q ss_pred CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416 4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80 (356)
Q Consensus 4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d 80 (356)
+|+.+++||.+ ..+++.....+. .+ ..+++++|||||++|+|+|..|++.|.+||++++.+++..
T Consensus 322 ~~~~~~ipG~~~~~~~~v~~~~~~~~------~~--~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~---- 389 (515)
T TIGR03140 322 RWRKLGVPGEKEYIGKGVAYCPHCDG------PF--FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA---- 389 (515)
T ss_pred CcCCCCCCCHHHcCCCeEEEeeccCh------hh--cCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh----
Confidence 46778888853 245554433222 11 1579999999999999999999999999999999877532
Q ss_pred HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--cEEecCeEEEecCCCCCchhhhccccc-ccC
Q 018416 81 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG 153 (356)
Q Consensus 81 ~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g 153 (356)
...+.+.|++ +||++++++.++++++ +++.+..+++.+ + +++++|.|++++|.+||+++++..+.. .+|
T Consensus 390 ---~~~l~~~l~~~~gV~i~~~~~v~~i~~-~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~G 465 (515)
T TIGR03140 390 ---DKVLQDKLKSLPNVDILTSAQTTEIVG-DGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDAVELNRRG 465 (515)
T ss_pred ---hHHHHHHHhcCCCCEEEECCeeEEEEc-CCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhhcccCCCC
Confidence 2345667766 6999999999999976 345565666643 2 469999999999999999988765555 568
Q ss_pred cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
+|.||+++||++|+|||+|||+..+.. ++..|+.+|..||.++..
T Consensus 466 ~I~vd~~~~Ts~p~IyAaGDv~~~~~~---------~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 466 EIVIDERGRTSVPGIFAAGDVTTVPYK---------QIIIAMGEGAKAALSAFD 510 (515)
T ss_pred eEEECCCCCCCCCCEEEcccccCCccc---------eEEEEEccHHHHHHHHHH
Confidence 899999999999999999999986532 234678899999988754
No 53
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.89 E-value=8.9e-22 Score=184.44 Aligned_cols=177 Identities=24% Similarity=0.337 Sum_probs=136.8
Q ss_pred CCccCCCCCCCC---CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416 4 KLEEFGLSGSDA---ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80 (356)
Q Consensus 4 ~p~~~~ipG~~~---~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d 80 (356)
+|+.+++||.+. .++++....+. .. ..+++++|||+|++|+|+|..|++.+.+|+++++.+.+.. +
T Consensus 111 ~~~~~~i~g~~~~~~~~~~~~~~~~~------~~--~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~ 179 (300)
T TIGR01292 111 SARKLGIPGEDEFLGRGVSYCATCDG------PF--FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E 179 (300)
T ss_pred CcccCCCCChhhcCCccEEEeeecCh------hh--cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C
Confidence 577788898642 34443333222 11 1578999999999999999999999999999999876532 3
Q ss_pred HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeC-----CCcEEecCeEEEecCCCCCchhhhccccc-ccC
Q 018416 81 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLR-----DGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG 153 (356)
Q Consensus 81 ~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~-----~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g 153 (356)
+ .+.+.|+++ ||++++++++++++. ++.+..+++. +++++++|++++++|++|+.++++..+.. .+|
T Consensus 180 ~----~~~~~l~~~~gv~~~~~~~v~~i~~--~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~~~~~~~g 253 (300)
T TIGR01292 180 K----ILLDRLRKNPNIEFLWNSTVKEIVG--DNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGLLELDEGG 253 (300)
T ss_pred H----HHHHHHHhCCCeEEEeccEEEEEEc--cCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHhheecCCC
Confidence 3 345667777 999999999999975 2344445442 23579999999999999999888765544 568
Q ss_pred cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
+|.||++++|++|+||++|||+.... ..+..|+.||+.||.+|.
T Consensus 254 ~i~v~~~~~t~~~~vya~GD~~~~~~---------~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 254 YIVTDEGMRTSVPGVFAAGDVRDKGY---------RQAVTAAGDGCIAALSAE 297 (300)
T ss_pred cEEECCCCccCCCCEEEeecccCcch---------hhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999997421 457789999999999985
No 54
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.88 E-value=1.2e-21 Score=188.84 Aligned_cols=185 Identities=26% Similarity=0.341 Sum_probs=139.2
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHH------h---cCCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCc
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------K---SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH 73 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~---~~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~ 73 (356)
.|+.+++||.+.+++++.. +++..+.... + ...+++++|||+|++|+|+|..|.++|.+ ||++++.+.
T Consensus 130 ~~~~~~ipg~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 130 KSRKLGIPGEDLPGVYSAL--EYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred CCCcCCCCCccccCceeHH--HHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 4678899998888887632 3333332211 0 11268999999999999999999999997 999998764
Q ss_pred cCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe--------------------CCCcEEecCeEEE
Q 018416 74 CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--------------------RDGNRLPTDMVVV 133 (356)
Q Consensus 74 ~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~--------------------~~g~~i~~D~vi~ 133 (356)
.... .. ..+.+.|+++||++++++.+++++. ++.+..+++ .+++++++|.+++
T Consensus 208 ~~~~-~~----~~~~~~l~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~ 280 (352)
T PRK12770 208 NEAP-AG----KYEIERLIARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVF 280 (352)
T ss_pred hhCC-CC----HHHHHHHHHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEE
Confidence 3221 22 3345568899999999999999975 233433432 1235799999999
Q ss_pred ecCCCCCchhhhc--cccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 134 GIGIRPNTSLFEG--QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 134 a~G~~p~~~l~~~--~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
++|++|++.+..+ ++.. .+|+|.||++++|+.|+|||+|||+..+ ..+..|+.||+.||.+|..
T Consensus 281 a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~----------~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 281 AIGEIPTPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGP----------SKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred CcccCCCchhhhcccCceecCCCcEeeCCCcccCCCCEEEEcccccCc----------chHHHHHHHHHHHHHHHHH
Confidence 9999999988764 3544 5678999999999999999999998754 3467899999999999854
No 55
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=99.88 E-value=2.3e-22 Score=189.41 Aligned_cols=190 Identities=23% Similarity=0.391 Sum_probs=153.1
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcC---------------CCCcEEEECCchHHHHHHHHHHH--------
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSC---------------SGGNAVVIGGGYIGMECAASLVI-------- 60 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~---------------~~~~vvVvGgG~iGlE~A~~L~~-------- 60 (356)
+|+.|++||.. ++.+.++.++||.+|+..+-.. +--++||||||+.|+|+|.+|+.
T Consensus 169 ~~~TFgipGV~-e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k 247 (491)
T KOG2495|consen 169 EPNTFGIPGVE-ENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRK 247 (491)
T ss_pred CCCCCCCCchh-hchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHH
Confidence 68999999985 7888999999999997655311 12369999999999999999985
Q ss_pred ------CCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEE
Q 018416 61 ------NKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVV 132 (356)
Q Consensus 61 ------~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi 132 (356)
.-.+||+++..|++|+- ||..+.+..++.+.+.||++.+++.|..++. .. ..+...+| ++|++-+++
T Consensus 248 ~yp~l~~~i~vtLiEA~d~iL~m-Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~---~~-I~~~~~~g~~~~iPYG~lV 322 (491)
T KOG2495|consen 248 IYPELKKDIKVTLIEAADHILNM-FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE---KT-IHAKTKDGEIEEIPYGLLV 322 (491)
T ss_pred hhhcchhheEEEeeccchhHHHH-HHHHHHHHHHHHhhhccceeecccEEEeecC---cE-EEEEcCCCceeeecceEEE
Confidence 25689999999999996 8999999999999999999999999999864 22 23444555 579999999
Q ss_pred EecCCCCCchh--hhccccc-ccCcEEEeccccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 133 VGIGIRPNTSL--FEGQLTL-EKGGIKVTGRLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 133 ~a~G~~p~~~l--~~~~l~~-~~g~I~vd~~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
|++|..|..-. +...+.- .+.++.|||+||. +.+||||+|||+..+. ..++++.|.+||..+|+++-
T Consensus 323 WatG~~~rp~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~-------~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 323 WATGNGPRPVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRG-------LKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred ecCCCCCchhhhhHhhcCCccCceeeeeeceeeccCcCceEEecccccccc-------CccHHHHHHHHHHHHHHHHH
Confidence 99998776532 2222222 3458999999998 8999999999994332 23689999999999999864
No 56
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.88 E-value=1.6e-21 Score=205.02 Aligned_cols=188 Identities=27% Similarity=0.336 Sum_probs=145.0
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHH------hcCCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCc-cC
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVM------KSCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH-CM 75 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l------~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~-~l 75 (356)
+|+.+++||.+.++|++..++.+...+.... ....+++|+|||||++|+|+|..+.++|.+ ||++++++. .+
T Consensus 529 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~ 608 (752)
T PRK12778 529 LPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEM 608 (752)
T ss_pred CCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccC
Confidence 5889999999999999776654443322111 012579999999999999999999999997 999998764 23
Q ss_pred CccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---------CC-----------cEEecCeEEEec
Q 018416 76 ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVVGI 135 (356)
Q Consensus 76 ~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~a~ 135 (356)
+. ...++ +.+++.||++++++.+.++..+++|.+..+++. +| +++++|.||+++
T Consensus 609 ~~-~~~e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~ 682 (752)
T PRK12778 609 PA-RLEEV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSV 682 (752)
T ss_pred CC-CHHHH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECc
Confidence 32 11221 346788999999999999987566766655542 22 259999999999
Q ss_pred CCCCCchhhhc--cccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 136 GIRPNTSLFEG--QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 136 G~~p~~~l~~~--~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
|.+|++.++.. ++.. .+|.|.||++++|+.|+|||+|||+..+ ..+..|+.+|+.||.+|..
T Consensus 683 G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~----------~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 683 GVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGG----------ATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred CCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCc----------HHHHHHHHHHHHHHHHHHH
Confidence 99999987654 3555 5688999999999999999999998754 3467899999999999864
No 57
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.88 E-value=3.5e-21 Score=191.78 Aligned_cols=187 Identities=27% Similarity=0.292 Sum_probs=138.8
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc-CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc-cCCccCC
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFT 80 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~-~l~~~~d 80 (356)
.|+.+++||.+.++|++................ ..+++|+|||+|++|+|+|..|.+.|. +||++++++. .++. .
T Consensus 237 ~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~--~ 314 (457)
T PRK11749 237 LPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPA--S 314 (457)
T ss_pred CCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC--C
Confidence 477889999988888864332222211000011 157999999999999999999999998 8999998765 3442 2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-------------------CCCcEEecCeEEEecCCCCCc
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-------------------RDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-------------------~~g~~i~~D~vi~a~G~~p~~ 141 (356)
.. ..+.+++.||++++++.++++..+ ++.+..+++ .+++++++|.||+++|.+|++
T Consensus 315 ~~----~~~~~~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 389 (457)
T PRK11749 315 EE----EVEHAKEEGVEFEWLAAPVEILGD-EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP 389 (457)
T ss_pred HH----HHHHHHHCCCEEEecCCcEEEEec-CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence 22 245678899999999999999863 333222332 123479999999999999998
Q ss_pred hhhhc--cccc-ccCcEEEec-ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 142 SLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 142 ~l~~~--~l~~-~~g~I~vd~-~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
.++.. .+.. .+|+|.||+ +++|+.|+|||+|||+..+ .++..|+.||+.||.+|..
T Consensus 390 ~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 390 LILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGA----------ATVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred hhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 87653 2444 578999998 8999999999999999542 3577899999999999864
No 58
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.86 E-value=6.7e-21 Score=200.62 Aligned_cols=200 Identities=27% Similarity=0.360 Sum_probs=143.8
Q ss_pred CCccCCCCCCCCCCeEE-eCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC-C-CcEEEEeeCC-ccCCccC
Q 018416 4 KLEEFGLSGSDAENVCY-LRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN-K-INVTMVFPEA-HCMARLF 79 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~-l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~-G-~~Vtlv~~~~-~~l~~~~ 79 (356)
.|+.+++||.+ +++++ +..+.+..+....+. .+++|||||||++|+|+|..+.+. | .+||++.|++ +.++. .
T Consensus 635 ~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~--~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA-~ 710 (1019)
T PRK09853 635 KNGGLKLEGGN-QNVIKALPFLEEYKNKGTALK--LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPA-W 710 (1019)
T ss_pred CCCCCCCCCcc-CCceehHHHHHHHhhhccccc--CCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccc-c
Confidence 46677899876 56653 222333222222222 589999999999999999999888 4 4899999886 34554 4
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE----------------EEEeCCCcEEecCeEEEecCCCCCchh
Q 018416 80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV----------------AVNLRDGNRLPTDMVVVGIGIRPNTSL 143 (356)
Q Consensus 80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~----------------~v~~~~g~~i~~D~vi~a~G~~p~~~l 143 (356)
++++. +.+ +.||++++++.++++.. +|++. .+...++.++++|.||+|+|.+|++++
T Consensus 711 ~eEle----~Al-eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel 783 (1019)
T PRK09853 711 REEYE----EAL-EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL 783 (1019)
T ss_pred HHHHH----HHH-HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH
Confidence 44443 322 46999999999888863 33321 122334467999999999999999998
Q ss_pred hhcc-ccc-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE
Q 018416 144 FEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPDKTDKFDYLPFFY 221 (356)
Q Consensus 144 ~~~~-l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~ 221 (356)
+... +.. .+|+|.||++++|+.|+|||+|||+..+ ..+..|+.||+.||.+|++... ..+...|.++
T Consensus 784 le~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp----------~tvv~Ai~qGr~AA~nI~~~~~-~~~~~~~~~~ 852 (1019)
T PRK09853 784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGP----------STIVAAIADARRAADAILSREG-IRSHQNDKYW 852 (1019)
T ss_pred HHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCc----------hHHHHHHHHHHHHHHHHhhhcC-CCcccccccc
Confidence 8654 555 5688999999999999999999998654 3467899999999999997653 2444555555
Q ss_pred EEec
Q 018416 222 SRVF 225 (356)
Q Consensus 222 ~~~~ 225 (356)
+..+
T Consensus 853 ~~~~ 856 (1019)
T PRK09853 853 NNVE 856 (1019)
T ss_pred cccc
Confidence 5544
No 59
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.86 E-value=7.8e-21 Score=193.35 Aligned_cols=178 Identities=24% Similarity=0.344 Sum_probs=134.0
Q ss_pred CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416 4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80 (356)
Q Consensus 4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d 80 (356)
+|+.+++||.+ ..+++++.+.++. . ..+++++|||||++|+|+|..|+++|.+||++++++.+.. +
T Consensus 113 ~p~~~~ipG~~~~~~~~v~~~~~~~~~------~--~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~ 181 (555)
T TIGR03143 113 SPRKLGFPGEEEFTGRGVAYCATCDGE------F--FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---A 181 (555)
T ss_pred ccCCCCCCCHHHhCCceEEEEeecChh------h--cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---C
Confidence 57788999963 3456555443221 1 1589999999999999999999999999999999987532 3
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE---eCCCcEE----ecCe----EEEecCCCCCchhhhcccc
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGNRL----PTDM----VVVGIGIRPNTSLFEGQLT 149 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~~i----~~D~----vi~a~G~~p~~~l~~~~l~ 149 (356)
.... .+.++.+||++++++.++++.. ++.+..+. ..+|+.. ++|. |++++|++|++.+++..+.
T Consensus 182 ~~~~---~~~~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~~l~ 256 (555)
T TIGR03143 182 KLIA---EKVKNHPKIEVKFNTELKEATG--DDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKGVVE 256 (555)
T ss_pred HHHH---HHHHhCCCcEEEeCCEEEEEEc--CCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhhhcc
Confidence 3332 2334557999999999999974 33333333 2456542 3676 9999999999999887666
Q ss_pred c-ccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 150 L-EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 150 ~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
. ++|+|.||++|+|++|+|||+|||+.... ..+..|..||+.||.+|.
T Consensus 257 l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~---------~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 257 LDKRGYIPTNEDMETNVPGVYAAGDLRPKEL---------RQVVTAVADGAIAATSAE 305 (555)
T ss_pred cCCCCeEEeCCccccCCCCEEEceeccCCCc---------chheeHHhhHHHHHHHHH
Confidence 6 56889999999999999999999975321 345679999999999985
No 60
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.86 E-value=6.5e-21 Score=192.52 Aligned_cols=179 Identities=25% Similarity=0.380 Sum_probs=137.4
Q ss_pred CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416 4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80 (356)
Q Consensus 4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d 80 (356)
+|+.+++||.+ ..++++....+. .. .++|+++|||+|++|+|+|..|+..+.+||++++.+.+.. +
T Consensus 321 ~~r~~~ipG~~~~~~~~v~~~~~~~~------~~--~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~ 389 (517)
T PRK15317 321 RWRNMNVPGEDEYRNKGVAYCPHCDG------PL--FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D 389 (517)
T ss_pred CcCCCCCCCHHHhcCceEEEeeccCc------hh--cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c
Confidence 46778888863 234544332211 11 2689999999999999999999999999999999887533 2
Q ss_pred HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeC---CC--cEEecCeEEEecCCCCCchhhhccccc-ccC
Q 018416 81 PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKG 153 (356)
Q Consensus 81 ~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g 153 (356)
..+.+.+.+ .||++++++.+++++. +++.+..+++. +| +++++|.+++++|.+||+++++..+.. ++|
T Consensus 390 ----~~l~~~l~~~~gI~i~~~~~v~~i~~-~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~v~~~~~g 464 (517)
T PRK15317 390 ----QVLQDKLRSLPNVTIITNAQTTEVTG-DGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGTVELNRRG 464 (517)
T ss_pred ----HHHHHHHhcCCCcEEEECcEEEEEEc-CCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhheeeCCCC
Confidence 344556665 6999999999999986 34666666654 33 359999999999999999988765555 568
Q ss_pred cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
+|.||+++||+.|+|||+|||+..+. ..+..|+.+|..||.++..
T Consensus 465 ~i~vd~~l~Ts~p~IyAaGDv~~~~~---------k~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 465 EIIVDARGATSVPGVFAAGDCTTVPY---------KQIIIAMGEGAKAALSAFD 509 (517)
T ss_pred cEEECcCCCCCCCCEEECccccCCCC---------CEEEEhhhhHHHHHHHHHH
Confidence 89999999999999999999998653 2345678888888887754
No 61
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.86 E-value=1.1e-20 Score=188.76 Aligned_cols=193 Identities=26% Similarity=0.355 Sum_probs=137.9
Q ss_pred CCccCCCCCCCCCCeEEeCCHH-HHHH-HHHH--H--hcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCC
Q 018416 4 KLEEFGLSGSDAENVCYLRDLA-DANR-LVNV--M--KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA 76 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~-da~~-i~~~--l--~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~ 76 (356)
.|+.+++||.+.++|++..+.- .+.. +... . ....+++|+|||+|++|+|+|..+.++|. +||++++.+.+..
T Consensus 240 ~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~ 319 (471)
T PRK12810 240 KPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPS 319 (471)
T ss_pred CCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcc
Confidence 4778899999999998643321 1110 0000 0 01257999999999999999999999986 7997766553322
Q ss_pred ccCCH----HH-HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----CC---------cEEecCeEEEecCC
Q 018416 77 RLFTP----KI-ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----DG---------NRLPTDMVVVGIGI 137 (356)
Q Consensus 77 ~~~d~----~~-~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----~g---------~~i~~D~vi~a~G~ 137 (356)
..++. .. .....+.+++.||++++++.++++.. +++++..+++. +| +++++|.||+++|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~-~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 320 RRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG-ENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred ccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc-cCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 21110 01 11134567788999999999999975 46766655432 22 46999999999999
Q ss_pred CCCc-hhhhcc-ccc-ccCcEEEe-cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 138 RPNT-SLFEGQ-LTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 138 ~p~~-~l~~~~-l~~-~~g~I~vd-~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
+|+. .+++.. +.. .+|.|.+| ++++|+.|+|||+|||+..+ .++..|+.||+.||.+|..
T Consensus 399 ~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~----------~~~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 399 TGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQ----------SLVVWAIAEGRQAARAIDA 462 (471)
T ss_pred CCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCc----------hhHHHHHHHHHHHHHHHHH
Confidence 9985 465543 555 56889998 79999999999999999743 2467899999999999864
No 62
>PRK13984 putative oxidoreductase; Provisional
Probab=99.85 E-value=6.6e-20 Score=188.63 Aligned_cols=183 Identities=25% Similarity=0.259 Sum_probs=134.6
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc-----CCCCcEEEECCchHHHHHHHHHHHCCC------cEEEEeeC-
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKS-----CSGGNAVVIGGGYIGMECAASLVINKI------NVTMVFPE- 71 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~-----~~~~~vvVvGgG~iGlE~A~~L~~~G~------~Vtlv~~~- 71 (356)
.|+.+++||.+.+++++ ..+....+.+.+.. ..+++++|||||++|+|+|..|.+++. +|+++...
T Consensus 380 ~~r~l~i~G~~~~gv~~--a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r 457 (604)
T PRK13984 380 LGRSTRIPGTDHPDVIQ--ALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLER 457 (604)
T ss_pred CCccCCCCCcCCcCeEe--HHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEecccc
Confidence 47889999998888874 34444445444321 136899999999999999999998853 78887432
Q ss_pred -CccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--------CC-----------cEEecCeE
Q 018416 72 -AHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--------DG-----------NRLPTDMV 131 (356)
Q Consensus 72 -~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--------~g-----------~~i~~D~v 131 (356)
...++. .+.+ +.+ +.+.||++++++.++++.. +++++..+++. +| +++++|.|
T Consensus 458 ~~~~~~~-~~~e----~~~-~~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~V 530 (604)
T PRK13984 458 TFEEMPA-DMEE----IEE-GLEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMV 530 (604)
T ss_pred CcccCCC-CHHH----HHH-HHHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEE
Confidence 222332 1222 222 3467999999999988865 46666555432 12 36999999
Q ss_pred EEecCCCCCchhhhcc----cccccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 132 VVGIGIRPNTSLFEGQ----LTLEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 132 i~a~G~~p~~~l~~~~----l~~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
|+++|++|++.++... +..++|+|.||+++|||+|+|||+|||+..+. ...|+.+|+.||.+|.
T Consensus 531 i~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~-----------~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 531 VEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD-----------IIHGVADGYWAAEGID 598 (604)
T ss_pred EEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH-----------HHHHHHHHHHHHHHHH
Confidence 9999999999877532 33457889999999999999999999997542 3568999999999985
No 63
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.84 E-value=5.5e-20 Score=195.77 Aligned_cols=189 Identities=22% Similarity=0.248 Sum_probs=140.5
Q ss_pred CCCccCCCCCCCCCCeEEeCCHHHHHHHHHHH--------hcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc-
Q 018416 3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVM--------KSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH- 73 (356)
Q Consensus 3 ~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l--------~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~- 73 (356)
-+|+.++|||.++++|++..++.+...+.... ....+|+|+|||||.+|+++|..+.++|.+||++.+++.
T Consensus 403 ~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~ 482 (944)
T PRK12779 403 GLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKS 482 (944)
T ss_pred CCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcc
Confidence 36899999999999999766654443322111 112579999999999999999999999999999998764
Q ss_pred cCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCC-CcEEEEEe---------C--------CC--cEEecCeEEE
Q 018416 74 CMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNL---------R--------DG--NRLPTDMVVV 133 (356)
Q Consensus 74 ~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~v~~v~~---------~--------~g--~~i~~D~vi~ 133 (356)
.++. ... .++. ..+.||++++++.++++..+++ +.+..+++ . +| .++++|.||+
T Consensus 483 ~mpa-~~~----e~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~ 556 (944)
T PRK12779 483 EMPA-RVE----ELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIM 556 (944)
T ss_pred cccc-cHH----HHHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEE
Confidence 3332 122 2222 3467999999999999976433 34544332 1 12 3599999999
Q ss_pred ecCCCCCchhhhc--cccc-ccCcEEEec-ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 134 GIGIRPNTSLFEG--QLTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 134 a~G~~p~~~l~~~--~l~~-~~g~I~vd~-~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
|+|..|++.+... +++. .+|.|.||+ .++||.|+|||+|||+..+ .++..|+.+|+.||.+|..
T Consensus 557 AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~----------~~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 557 ALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG----------STAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred cCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh----------HHHHHHHHHHHHHHHHHHH
Confidence 9999999865443 2554 568899997 5899999999999999754 3567899999999999864
No 64
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.84 E-value=1.1e-19 Score=181.28 Aligned_cols=187 Identities=26% Similarity=0.405 Sum_probs=137.8
Q ss_pred CccCCCCCCCCCCeEEeCCHHH--HHHHHHH-------HhcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCcc
Q 018416 5 LEEFGLSGSDAENVCYLRDLAD--ANRLVNV-------MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC 74 (356)
Q Consensus 5 p~~~~ipG~~~~~v~~l~~~~d--a~~i~~~-------l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~ 74 (356)
+..++|||.++++|++..++.. ...+... +....+++++|||+|++|+|+|..+.++|. +||++++++..
T Consensus 239 ~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~ 318 (467)
T TIGR01318 239 SMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEA 318 (467)
T ss_pred CCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcc
Confidence 4568899999999996543211 1111000 001247899999999999999999999996 79999998763
Q ss_pred -CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---------CC-----------cEEecCeEEE
Q 018416 75 -MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVVV 133 (356)
Q Consensus 75 -l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi~ 133 (356)
++. .+.++ +.+++.||++++++.++++..+++|++..+++. +| +++++|.||+
T Consensus 319 ~~~~-~~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~ 392 (467)
T TIGR01318 319 NMPG-SRREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIM 392 (467)
T ss_pred cCCC-CHHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEE
Confidence 443 33333 346788999999999999976556666555431 12 3699999999
Q ss_pred ecCCCCCc-hhhhc-cccc-ccCcEEEe----cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 134 GIGIRPNT-SLFEG-QLTL-EKGGIKVT----GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 134 a~G~~p~~-~l~~~-~l~~-~~g~I~vd----~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
++|++|+. .+++. .+.. .+|+|.|| ++++|+.|+|||+|||+..+. .+..|+.+|+.||.+|.
T Consensus 393 a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~----------~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 393 AFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD----------LVVTAVAEGRQAAQGIL 462 (467)
T ss_pred CCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc----------HHHHHHHHHHHHHHHHH
Confidence 99999985 44443 2555 56889999 689999999999999987542 45689999999999985
Q ss_pred C
Q 018416 207 E 207 (356)
Q Consensus 207 g 207 (356)
.
T Consensus 463 ~ 463 (467)
T TIGR01318 463 D 463 (467)
T ss_pred H
Confidence 3
No 65
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.84 E-value=5.7e-20 Score=190.08 Aligned_cols=185 Identities=25% Similarity=0.349 Sum_probs=134.5
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc-cCCccCCH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH-CMARLFTP 81 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~-~l~~~~d~ 81 (356)
.+..+++||.+.++|++-.++-........ ...+++|+|||+|++|+|+|..+.+.|. +||++.+++. .|+. .+.
T Consensus 290 ~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~--~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa-~~~ 366 (652)
T PRK12814 290 KASKMGIPGEELPGVISGIDFLRNVALGTA--LHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPA-NRA 366 (652)
T ss_pred CCCCCCCCCcCcCCcEeHHHHHHHhhcCCc--ccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH
Confidence 345788999998888743221111100001 1258999999999999999999999997 5999998875 4554 343
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcE--EEEEeC---------------CCc--EEecCeEEEecCCCCCch
Q 018416 82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV--VAVNLR---------------DGN--RLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v--~~v~~~---------------~g~--~i~~D~vi~a~G~~p~~~ 142 (356)
++ .+. .+.||++++++.++++..+ ++.+ ..+.+. +|+ ++++|.||+++|..|++.
T Consensus 367 ei----~~a-~~eGV~i~~~~~~~~i~~~-~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ 440 (652)
T PRK12814 367 EI----EEA-LAEGVSLRELAAPVSIERS-EGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP 440 (652)
T ss_pred HH----HHH-HHcCCcEEeccCcEEEEec-CCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcc
Confidence 33 222 3579999999999998763 3332 222221 122 599999999999999998
Q ss_pred hhhcc-ccc-ccCcEEEec-ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 143 LFEGQ-LTL-EKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 143 l~~~~-l~~-~~g~I~vd~-~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
++... +.. .+|+|.||+ +++|+.|+|||+|||+..+ .++..|+.||+.||.+|..
T Consensus 441 ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~----------~~v~~Ai~~G~~AA~~I~~ 498 (652)
T PRK12814 441 IAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGA----------DIAINAVEQGKRAAHAIDL 498 (652)
T ss_pred cccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 87654 555 468899997 6899999999999998754 3467899999999999864
No 66
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.83 E-value=7.9e-20 Score=196.07 Aligned_cols=188 Identities=21% Similarity=0.267 Sum_probs=141.4
Q ss_pred CCCccCCCCCCCCCCeEEeCCHHHHHHHHHH-----Hh--cCCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCcc
Q 018416 3 LKLEEFGLSGSDAENVCYLRDLADANRLVNV-----MK--SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHC 74 (356)
Q Consensus 3 ~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~-----l~--~~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~ 74 (356)
.+|+.++|||.++++|++..++.+...+... .. ...+|+|+|||||++|+++|..+.++|.+ |+++.++...
T Consensus 528 ~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~ 607 (1006)
T PRK12775 528 GAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEA 607 (1006)
T ss_pred CCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcc
Confidence 3689999999999999976655444332110 00 12579999999999999999999999985 8888776432
Q ss_pred -CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----------------CC--cEEecCeEEEe
Q 018416 75 -MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------------DG--NRLPTDMVVVG 134 (356)
Q Consensus 75 -l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----------------~g--~~i~~D~vi~a 134 (356)
++. .+. ..+.+++.||++++++.++++..+++|++..+++. +| .++++|.||++
T Consensus 608 em~a--~~~----e~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~A 681 (1006)
T PRK12775 608 EAPA--RIE----EIRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYA 681 (1006)
T ss_pred cCCC--CHH----HHHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEEC
Confidence 221 111 12456788999999999999976567777665432 12 25999999999
Q ss_pred cCCCCCchhhhc--cccc-ccCcEEEec-----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 135 IGIRPNTSLFEG--QLTL-EKGGIKVTG-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 135 ~G~~p~~~l~~~--~l~~-~~g~I~vd~-----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
+|++|++.+... ++.+ .+|.|.+|+ +++||.|+|||+|||+..+ .++..|+.+|+.||.+|.
T Consensus 682 iG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~----------~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 682 LGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGG----------ATVILAMGAGRRAARSIA 751 (1006)
T ss_pred CCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCc----------cHHHHHHHHHHHHHHHHH
Confidence 999999887654 3555 568899996 7899999999999998754 346789999999999875
No 67
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.83 E-value=1.6e-19 Score=187.13 Aligned_cols=188 Identities=24% Similarity=0.372 Sum_probs=138.1
Q ss_pred CCccCCCCCCCCCCeEEeCC-----HHHHHHHHHHH----hcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc
Q 018416 4 KLEEFGLSGSDAENVCYLRD-----LADANRLVNVM----KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH 73 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~-----~~da~~i~~~l----~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~ 73 (356)
.+..+++||.+.++|+..-+ ..+...+.... ....+++|+|||+|++|+|+|..+.++|. +||++.+++.
T Consensus 424 ~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 424 RSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDE 503 (654)
T ss_pred CCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCC
Confidence 46678999999999985321 11111111000 01257899999999999999999999996 6999998765
Q ss_pred c-CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---------CC-----------cEEecCeEE
Q 018416 74 C-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---------DG-----------NRLPTDMVV 132 (356)
Q Consensus 74 ~-l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---------~g-----------~~i~~D~vi 132 (356)
. ++. .+.+ .+.+++.||++++++.++++..+++|++..+++. +| .++++|+||
T Consensus 504 ~~~~~-~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi 577 (654)
T PRK12769 504 ANMPG-SKKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVI 577 (654)
T ss_pred CCCCC-CHHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEE
Confidence 4 443 2322 3457789999999999999976556776655541 22 259999999
Q ss_pred EecCCCCCc-hhhhcc-ccc-ccCcEEEec----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHH
Q 018416 133 VGIGIRPNT-SLFEGQ-LTL-EKGGIKVTG----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI 205 (356)
Q Consensus 133 ~a~G~~p~~-~l~~~~-l~~-~~g~I~vd~----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 205 (356)
+++|+.|++ .+++.. +.+ .+|.|.||+ +++||.|+|||+||++..+. ++..|+.+|+.||.+|
T Consensus 578 ~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~----------~vv~Ai~~Gr~AA~~I 647 (654)
T PRK12769 578 MAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD----------LVVTAMAEGRHAAQGI 647 (654)
T ss_pred ECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc----------HHHHHHHHHHHHHHHH
Confidence 999999986 455443 555 568899986 58999999999999987543 4678999999999998
Q ss_pred cC
Q 018416 206 ME 207 (356)
Q Consensus 206 ~g 207 (356)
..
T Consensus 648 ~~ 649 (654)
T PRK12769 648 ID 649 (654)
T ss_pred HH
Confidence 64
No 68
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.83 E-value=2.5e-19 Score=179.40 Aligned_cols=194 Identities=22% Similarity=0.317 Sum_probs=136.7
Q ss_pred CCccCCCCCCCCCCeEEeCC-HHHHHHHHH--HH-----hcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCcc
Q 018416 4 KLEEFGLSGSDAENVCYLRD-LADANRLVN--VM-----KSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHC 74 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~-~~da~~i~~--~l-----~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~ 74 (356)
.|..+++||.+.++|++... +.++..+.. .. ....+|+|+|||+|++|+|+|..+.++|. +|+++++.+.+
T Consensus 240 ~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~ 319 (485)
T TIGR01317 240 KPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP 319 (485)
T ss_pred CCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 47889999999999997543 333322211 00 01257999999999999999888888775 79999988776
Q ss_pred CCccC-C------H---HHHHHHHHHHHhCCCEE-EeCCeeeEEEEcCCCcEEEEEe--------CCC-----------c
Q 018416 75 MARLF-T------P---KIASYYEEYYKSKGVKF-VKGTVLSSFDVDSNGKVVAVNL--------RDG-----------N 124 (356)
Q Consensus 75 l~~~~-d------~---~~~~~~~~~l~~~GV~v-~~~~~v~~i~~~~~g~v~~v~~--------~~g-----------~ 124 (356)
+.... + + ++....++..+..||++ ++++.+.++..++++.+..+++ .+| +
T Consensus 320 ~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~ 399 (485)
T TIGR01317 320 PEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEE 399 (485)
T ss_pred hhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceE
Confidence 54211 1 0 12223344444567754 5678888887644466665543 133 2
Q ss_pred EEecCeEEEecCCC-CCchhhhcc-ccc-ccCcEEE-ecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHH
Q 018416 125 RLPTDMVVVGIGIR-PNTSLFEGQ-LTL-EKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKH 200 (356)
Q Consensus 125 ~i~~D~vi~a~G~~-p~~~l~~~~-l~~-~~g~I~v-d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~ 200 (356)
++++|.||+++|.. |++.+++.. +.. .+|.|.+ |++++|+.|+|||+|||+..+ ..+..|+.+|+.
T Consensus 400 ~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~----------~~~~~Av~~G~~ 469 (485)
T TIGR01317 400 VFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQ----------SLIVWAINEGRK 469 (485)
T ss_pred EEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCc----------HHHHHHHHHHHH
Confidence 69999999999986 888877654 554 4677854 678999999999999998653 246679999999
Q ss_pred HHHHHcC
Q 018416 201 AVAAIME 207 (356)
Q Consensus 201 aa~~i~g 207 (356)
||.+|..
T Consensus 470 AA~~i~~ 476 (485)
T TIGR01317 470 AAAAVDR 476 (485)
T ss_pred HHHHHHH
Confidence 9999854
No 69
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.3e-19 Score=168.36 Aligned_cols=175 Identities=29% Similarity=0.377 Sum_probs=137.3
Q ss_pred CCccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC
Q 018416 4 KLEEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT 80 (356)
Q Consensus 4 ~p~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d 80 (356)
.++.+++||.+ ..+|+++-+- |. .+ ++|+++|||||.+++|-|..|.+.+.+||+++|++.+-+ .
T Consensus 114 ~~~~~~~~~e~e~~g~gv~yc~~c-dg-~~-------~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra---~ 181 (305)
T COG0492 114 GARKLGVPGEEEFEGKGVSYCATC-DG-FF-------KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA---E 181 (305)
T ss_pred cccCCCCCcchhhcCCceEEeeec-Cc-cc-------cCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc---C
Confidence 35666677533 2477776653 32 22 678999999999999999999999999999999988554 2
Q ss_pred HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCC----cEEecCeEEEecCCCCCchhhhccccc-ccCc
Q 018416 81 PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGG 154 (356)
Q Consensus 81 ~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~ 154 (356)
+.+.+.++++ +|++++++.+.++.++ + +..+++.+. +.+++|.+++++|..|++++++....+ ++|+
T Consensus 182 ----~~~~~~l~~~~~i~~~~~~~i~ei~G~--~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~ 254 (305)
T COG0492 182 ----EILVERLKKNVKIEVLTNTVVKEILGD--D-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGY 254 (305)
T ss_pred ----HHHHHHHHhcCCeEEEeCCceeEEecC--c-cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCc
Confidence 3345555555 8999999999999863 2 556666653 368999999999999999998876444 7899
Q ss_pred EEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 155 IKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 155 I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
|.||+.|+||+|+|||+|||+.... .++..|..+|..||.++.
T Consensus 255 I~v~~~~~TsvpGifAaGDv~~~~~---------rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 255 IVVDEEMETSVPGIFAAGDVADKNG---------RQIATAAGDGAIAALSAE 297 (305)
T ss_pred EEcCCCcccCCCCEEEeEeeccCcc---------cEEeehhhhHHHHHHHHH
Confidence 9999999999999999999998764 245567778888887654
No 70
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.80 E-value=1.9e-18 Score=182.97 Aligned_cols=184 Identities=24% Similarity=0.363 Sum_probs=132.4
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHH-hcCCCCcEEEECCchHHHHHHHHHHHC-CC-cEEEEeeCC-ccCCccC
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVM-KSCSGGNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEA-HCMARLF 79 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l-~~~~~~~vvVvGgG~iGlE~A~~L~~~-G~-~Vtlv~~~~-~~l~~~~ 79 (356)
.++.+++||.+ ++++ .+++....+.... ....+++|+|||||++|+|+|..+.+. |. +||++.+++ ..++. .
T Consensus 633 ~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa-~ 708 (1012)
T TIGR03315 633 KHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPA-S 708 (1012)
T ss_pred CCCCCCcCCCC-ccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCcccccc-C
Confidence 45667888864 4554 2333333332210 012589999999999999999999886 75 799999876 34554 4
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEE--------------EeCCC--cEEecCeEEEecCCCCCchh
Q 018416 80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV--------------NLRDG--NRLPTDMVVVGIGIRPNTSL 143 (356)
Q Consensus 80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v--------------~~~~g--~~i~~D~vi~a~G~~p~~~l 143 (356)
++++. +. .+.||+++++..+.+++ ++.+... ...+| .++++|+||+|+|.+|++++
T Consensus 709 ~eEl~----~a-leeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l 780 (1012)
T TIGR03315 709 REELE----EA-LEDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL 780 (1012)
T ss_pred HHHHH----HH-HHcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH
Confidence 44433 22 24799999998888885 2222111 11123 36899999999999999998
Q ss_pred hhcc-ccc-ccCcEEEecc-cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416 144 FEGQ-LTL-EKGGIKVTGR-LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 209 (356)
Q Consensus 144 ~~~~-l~~-~~g~I~vd~~-l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 209 (356)
++.. +.. .+|+|.||++ ++|+.|+|||+|||+..+ ..+..|+.||+.||.+|++..
T Consensus 781 le~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP----------~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP----------ATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred HHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCc----------cHHHHHHHHHHHHHHHHhccc
Confidence 8654 555 5688999986 899999999999998654 357789999999999998754
No 71
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.80 E-value=1.3e-18 Score=179.68 Aligned_cols=188 Identities=22% Similarity=0.346 Sum_probs=136.7
Q ss_pred CCccCCCCCCCCCCeEEeCC-----HHHHHHHHHH----HhcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCc
Q 018416 4 KLEEFGLSGSDAENVCYLRD-----LADANRLVNV----MKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAH 73 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~-----~~da~~i~~~----l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~ 73 (356)
.+..+++||.+.+++++.-. ..+...+.+. +....+|+++|||+|.+++++|..+.++|. +||++.+++.
T Consensus 407 ~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~ 486 (639)
T PRK12809 407 GMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDE 486 (639)
T ss_pred CCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 45678899999999886211 1111111110 111257999999999999999999999995 7999998865
Q ss_pred c-CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---C------CC-----------cEEecCeEE
Q 018416 74 C-MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---R------DG-----------NRLPTDMVV 132 (356)
Q Consensus 74 ~-l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~------~g-----------~~i~~D~vi 132 (356)
. ++. .+.++ ..+++.||++++++.++++..+++|++..+++ . +| .++++|.||
T Consensus 487 ~~~~~-~~~e~-----~~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi 560 (639)
T PRK12809 487 VSMPG-SRKEV-----VNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLI 560 (639)
T ss_pred ccCCC-CHHHH-----HHHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEE
Confidence 5 443 33333 23567899999999999998655676655432 1 12 368999999
Q ss_pred EecCCCCCc-hhhhc-cccc-ccCcEEEec----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHH
Q 018416 133 VGIGIRPNT-SLFEG-QLTL-EKGGIKVTG----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAI 205 (356)
Q Consensus 133 ~a~G~~p~~-~l~~~-~l~~-~~g~I~vd~----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i 205 (356)
+++|++|+. .+++. ++.. .+|.|.+|+ +++|+.|+|||+|||+..+ .++..|+.+|+.||.+|
T Consensus 561 ~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~----------~~vv~Ai~~Gr~AA~~i 630 (639)
T PRK12809 561 MAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGA----------DLVVTAMAAGRQAARDM 630 (639)
T ss_pred ECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCc----------hHHHHHHHHHHHHHHHH
Confidence 999999975 44443 3555 568899985 4899999999999998754 34678999999999998
Q ss_pred cC
Q 018416 206 ME 207 (356)
Q Consensus 206 ~g 207 (356)
..
T Consensus 631 ~~ 632 (639)
T PRK12809 631 LT 632 (639)
T ss_pred HH
Confidence 64
No 72
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.73 E-value=1.3e-16 Score=162.89 Aligned_cols=186 Identities=25% Similarity=0.314 Sum_probs=133.5
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCcc-CCccCCH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC-MARLFTP 81 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~-l~~~~d~ 81 (356)
.+..+.++|.+..+++..-.+.. ..........+++++|+|+|..+++++..+.++| .+|+++.+.+.. ++. .+.
T Consensus 234 ~~~~~~i~g~~~~gv~~~~~~l~--~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~-~~~ 310 (564)
T PRK12771 234 LGKRLPIPGEDAAGVLDAVDFLR--AVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPA-HDE 310 (564)
T ss_pred CCCcCCCCCCccCCcEEHHHHHH--HhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCC-CHH
Confidence 34567888887777764322111 1100001224799999999999999999999998 679999987642 332 333
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcE----EEEEe----CCC---------cEEecCeEEEecCCCCCchhh
Q 018416 82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV----VAVNL----RDG---------NRLPTDMVVVGIGIRPNTSLF 144 (356)
Q Consensus 82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v----~~v~~----~~g---------~~i~~D~vi~a~G~~p~~~l~ 144 (356)
++ +...+.||++++++.+.++..++++.+ ..+++ .+| .++++|+||+++|..|++.++
T Consensus 311 ~~-----~~a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~ 385 (564)
T PRK12771 311 EI-----EEALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGL 385 (564)
T ss_pred HH-----HHHHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhh
Confidence 32 234567999999999999976444432 12222 122 379999999999999999887
Q ss_pred hc--ccccccCcEEEec-ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 145 EG--QLTLEKGGIKVTG-RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 145 ~~--~l~~~~g~I~vd~-~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
+. .+..++|.|.||+ +++|+.|+|||+|||+..+ .++..|+.||+.||.+|..
T Consensus 386 ~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~----------~~v~~Av~~G~~aA~~i~~ 441 (564)
T PRK12771 386 ESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGP----------RTVTTAIGHGKKAARNIDA 441 (564)
T ss_pred hhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCc----------hHHHHHHHHHHHHHHHHHH
Confidence 74 3444678899998 7899999999999998754 3577899999999999853
No 73
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.73 E-value=1.1e-16 Score=172.53 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=131.0
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCCccCCHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMARLFTPK 82 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~~~~d~~ 82 (356)
+|+.+++||.+.++|++.....+..+ .+ ...++++++|||+|++|+|+|..|++.|. .|+++++.+.+
T Consensus 285 ~~r~~pipG~~~pgV~~~~~~~~~l~--~~-~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~-------- 353 (985)
T TIGR01372 285 HERPLVFANNDRPGVMLAGAARTYLN--RY-GVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV-------- 353 (985)
T ss_pred CCcCCCCCCCCCCCcEEchHHHHHHH--hh-CcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--------
Confidence 57888999999999998765554322 11 11257999999999999999999999996 57888876543
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC----CCcEEecCeEEEecCCCCCchhhhcc-cccccCcEEE
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR----DGNRLPTDMVVVGIGIRPNTSLFEGQ-LTLEKGGIKV 157 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~----~g~~i~~D~vi~a~G~~p~~~l~~~~-l~~~~g~I~v 157 (356)
...+.+.|+++||++++++.++++.. ++.+..+++. ++++++||.|+++.|++||++++... .. +..
T Consensus 354 -~~~l~~~L~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~-----~~~ 425 (985)
T TIGR01372 354 -SPEARAEARELGIEVLTGHVVAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK-----LAW 425 (985)
T ss_pred -hHHHHHHHHHcCCEEEcCCeEEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC-----eee
Confidence 22356778999999999999999975 3444455543 45689999999999999999988643 22 222
Q ss_pred ecc-----cccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 158 TGR-----LQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 158 d~~-----l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
|+. -.|+.|+||++|||+... .+..|..+|+.||..++
T Consensus 426 ~~~~~~~~~~t~v~gVyaaGD~~g~~-----------~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 426 DAAIAAFLPGDAVQGCILAGAANGLF-----------GLAAALADGAAAGAAAA 468 (985)
T ss_pred ccccCceecCCCCCCeEEeeccCCcc-----------CHHHHHHHHHHHHHHHH
Confidence 221 137899999999998653 35679999999998875
No 74
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.72 E-value=1.3e-16 Score=158.71 Aligned_cols=193 Identities=24% Similarity=0.350 Sum_probs=133.8
Q ss_pred CccCCCCCCCCCCeEEeCCHH-------HHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHC----------------
Q 018416 5 LEEFGLSGSDAENVCYLRDLA-------DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVIN---------------- 61 (356)
Q Consensus 5 p~~~~ipG~~~~~v~~l~~~~-------da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~---------------- 61 (356)
++.++|||.+.++|++.+++- ++..+...+ ..+++++|||+|++|+|+|..|.+.
T Consensus 127 ~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~--~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~ 204 (491)
T PLN02852 127 DRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDL--KSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEA 204 (491)
T ss_pred CCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcc--cCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHH
Confidence 578899999999999765542 222221111 1579999999999999999999876
Q ss_pred ----CC-cEEEEeeCCccCCccCCHHHH-------------------------------------HHHHHHHHh------
Q 018416 62 ----KI-NVTMVFPEAHCMARLFTPKIA-------------------------------------SYYEEYYKS------ 93 (356)
Q Consensus 62 ----G~-~Vtlv~~~~~~l~~~~d~~~~-------------------------------------~~~~~~l~~------ 93 (356)
|. +|+++.|+...-..+...|+. +.+.+...+
T Consensus 205 l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~ 284 (491)
T PLN02852 205 LRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPS 284 (491)
T ss_pred HhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccC
Confidence 65 599999886422111111211 122222222
Q ss_pred ---CCCEEEeCCeeeEEEEc--CCCcEEEEEeC-----------------CC--cEEecCeEEEecCCC--CCchh-hhc
Q 018416 94 ---KGVKFVKGTVLSSFDVD--SNGKVVAVNLR-----------------DG--NRLPTDMVVVGIGIR--PNTSL-FEG 146 (356)
Q Consensus 94 ---~GV~v~~~~~v~~i~~~--~~g~v~~v~~~-----------------~g--~~i~~D~vi~a~G~~--p~~~l-~~~ 146 (356)
++|.|++...+++|..+ +++++..+++. +| +.++||.||.++|.+ |.+.+ +..
T Consensus 285 ~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~ 364 (491)
T PLN02852 285 GGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDH 364 (491)
T ss_pred CCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCcccc
Confidence 58999999999999742 23567666552 12 258999999999997 66653 322
Q ss_pred --ccc-cccCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416 147 --QLT-LEKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 208 (356)
Q Consensus 147 --~l~-~~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 208 (356)
++. ..+|+|.+|+.++|+.|+|||+|||...+. ..+..++.+|+.++++|+..
T Consensus 365 ~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~---------gvI~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 365 KRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPT---------GIIGTNLTCAEETVASIAED 420 (491)
T ss_pred CcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCC---------CeeeecHhhHHHHHHHHHHH
Confidence 233 367999999888999999999999998654 34567888889999888743
No 75
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=6.8e-17 Score=148.88 Aligned_cols=159 Identities=28% Similarity=0.440 Sum_probs=122.8
Q ss_pred ccCCCCCCC---CCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHH
Q 018416 6 EEFGLSGSD---AENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPK 82 (356)
Q Consensus 6 ~~~~ipG~~---~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~ 82 (356)
+.+++||.+ .++|-++-..+.- | +++|+|+|||||.+|+|.|..|+-.-..||+++-.+++-. |
T Consensus 326 Rn~nvPGE~e~rnKGVayCPHCDGP------L--F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA---D-- 392 (520)
T COG3634 326 RNMNVPGEDEYRNKGVAYCPHCDGP------L--FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA---D-- 392 (520)
T ss_pred hcCCCCchHHHhhCCeeeCCCCCCc------c--cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh---H--
Confidence 457888875 3566544332111 1 2789999999999999999999988889999987665332 2
Q ss_pred HHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeC---CC--cEEecCeEEEecCCCCCchhhhccccc-ccCcE
Q 018416 83 IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR---DG--NRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGI 155 (356)
Q Consensus 83 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g--~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I 155 (356)
+.+++.|+. .+|+++++...+++.++ ..++..+... +| ..++-+-|++-+|..||++|++..+++ .+|.|
T Consensus 393 --~VLq~kl~sl~Nv~ii~na~Ttei~Gd-g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEI 469 (520)
T COG3634 393 --AVLQDKLRSLPNVTIITNAQTTEVKGD-GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEI 469 (520)
T ss_pred --HHHHHHHhcCCCcEEEecceeeEEecC-CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchhhcCcCccE
Confidence 344555554 58999999999999863 3445555543 33 357889999999999999999998887 78999
Q ss_pred EEecccccCCCCEEEEccccccCcc
Q 018416 156 KVTGRLQSSNSSVYAVGDVAAFPLK 180 (356)
Q Consensus 156 ~vd~~l~ts~~~VyAiGD~~~~~~~ 180 (356)
.||.+..||.|+|||+|||...+..
T Consensus 470 ivD~~g~TsvpGvFAAGD~T~~~yK 494 (520)
T COG3634 470 IVDARGETNVPGVFAAGDCTTVPYK 494 (520)
T ss_pred EEecCCCcCCCceeecCcccCCccc
Confidence 9999999999999999999987753
No 76
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=99.65 E-value=1.7e-15 Score=114.43 Aligned_cols=80 Identities=36% Similarity=0.606 Sum_probs=74.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 120 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~ 120 (356)
|++|||||++|+|+|..|+++|.+||++++++.+++. +|+++.+.+.+.|+++||++++++.+++++.++++ +. |++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~-~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~-~~-V~~ 77 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPG-FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG-VE-VTL 77 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTT-SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS-EE-EEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhh-cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE-EE-EEE
Confidence 6899999999999999999999999999999999965 99999999999999999999999999999987777 65 888
Q ss_pred CCC
Q 018416 121 RDG 123 (356)
Q Consensus 121 ~~g 123 (356)
+||
T Consensus 78 ~~g 80 (80)
T PF00070_consen 78 EDG 80 (80)
T ss_dssp ETS
T ss_pred ecC
Confidence 886
No 77
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=99.58 E-value=5.4e-15 Score=130.49 Aligned_cols=137 Identities=28% Similarity=0.399 Sum_probs=97.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--ccCCH-----------HHH--H--HHHHHHHhCCCEEEeCCe
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--RLFTP-----------KIA--S--YYEEYYKSKGVKFVKGTV 103 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--~~~d~-----------~~~--~--~~~~~l~~~GV~v~~~~~ 103 (356)
+|+|||||+.|+.+|..|++.+.+|+++++.+.... ..+.. ... + .+.+.+...+++++.+++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 589999999999999999999999999987653210 00000 011 1 344455778999999999
Q ss_pred eeEEEEcCCCc-------EEEEEeCCCcEEecCeEEEecCCCCCchh-------------------h-------------
Q 018416 104 LSSFDVDSNGK-------VVAVNLRDGNRLPTDMVVVGIGIRPNTSL-------------------F------------- 144 (356)
Q Consensus 104 v~~i~~~~~g~-------v~~v~~~~g~~i~~D~vi~a~G~~p~~~l-------------------~------------- 144 (356)
+.+++. ..+. +......++.++.+|.+|+|+|.+|+... .
T Consensus 81 v~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG 159 (201)
T PF07992_consen 81 VVSIDP-ESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG 159 (201)
T ss_dssp EEEEEE-STTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES
T ss_pred cccccc-cccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCccccccccccccccccccccccccccccc
Confidence 999986 3332 11224456678999999999997755220 0
Q ss_pred -----hc-cccc-ccCcEEEecccccCCCCEEEEccccccC
Q 018416 145 -----EG-QLTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP 178 (356)
Q Consensus 145 -----~~-~l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~ 178 (356)
+. .+++ ++|+|.||+++||+.|+|||+|||+..+
T Consensus 160 ~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ccccccccccccccccccccccccccccccccccccccccC
Confidence 00 1334 5788999999999999999999999865
No 78
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.3e-14 Score=126.59 Aligned_cols=133 Identities=27% Similarity=0.317 Sum_probs=106.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE-
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV- 116 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~- 116 (356)
+.|..+|||||..++|-|.+|.+.+.+|.+++|++++-. +..|. ++.++.-+|++++++.+.+..++ .+.+.
T Consensus 156 rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA---s~~Mq---~ra~~npnI~v~~nt~~~ea~gd-~~~l~~ 228 (322)
T KOG0404|consen 156 RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA---SKIMQ---QRAEKNPNIEVLYNTVAVEALGD-GKLLNG 228 (322)
T ss_pred cCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhH---HHHHH---HHHhcCCCeEEEechhhhhhccC-cccccc
Confidence 578899999999999999999999999999999998543 23332 23345678999999988887653 22222
Q ss_pred ----EEEeCCCcEEecCeEEEecCCCCCchhhhccccc-ccCcEEEe-cccccCCCCEEEEcccccc
Q 018416 117 ----AVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTL-EKGGIKVT-GRLQSSNSSVYAVGDVAAF 177 (356)
Q Consensus 117 ----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~-~~g~I~vd-~~l~ts~~~VyAiGD~~~~ 177 (356)
.+++.+-..++.+-++.++|..|++.+++..+++ .+|+|++- ..-.||+|++||+||+...
T Consensus 229 l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~ 295 (322)
T KOG0404|consen 229 LRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDK 295 (322)
T ss_pred eEEEecccCcccccccceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchH
Confidence 2333334579999999999999999999988887 78899887 5788999999999999764
No 79
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.42 E-value=8e-13 Score=130.45 Aligned_cols=193 Identities=27% Similarity=0.321 Sum_probs=137.1
Q ss_pred CCCCccCCCCCCCCCCeEEeCCHHHHHHHHHHHhc--------CCCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCC
Q 018416 2 ALKLEEFGLSGSDAENVCYLRDLADANRLVNVMKS--------CSGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEA 72 (356)
Q Consensus 2 ~~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~~--------~~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~ 72 (356)
+.+|+.+++||.|+++|+.--+.-...... .+.. ..+|+++|||+|.++++++....+.|. +|+.+.+..
T Consensus 218 ~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~-~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~ 296 (457)
T COG0493 218 AGKPRPLDIPGEDAKGVAFALDFLTRLNKE-VLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYRED 296 (457)
T ss_pred ccCCCCCCCCCcCCCcchHHHHHHHHHHHH-HhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEecccc
Confidence 458999999999999997322211111110 1110 134999999999999999999999998 677775322
Q ss_pred cc--CCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--------C-----------C--cEEecC
Q 018416 73 HC--MARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--------D-----------G--NRLPTD 129 (356)
Q Consensus 73 ~~--l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--------~-----------g--~~i~~D 129 (356)
.- ... .+........+...++|+...+.....++..+++|++..+.+. + | ..+++|
T Consensus 297 ~~~~~~~-~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD 375 (457)
T COG0493 297 RDDETNE-WPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAAD 375 (457)
T ss_pred ccccCCc-ccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHH
Confidence 11 111 2222344455667788999999999999998888887755331 1 2 257899
Q ss_pred eEEEecCCCCCchhh---hccccc-ccCcEEEeccc-ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHH
Q 018416 130 MVVVGIGIRPNTSLF---EGQLTL-EKGGIKVTGRL-QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAA 204 (356)
Q Consensus 130 ~vi~a~G~~p~~~l~---~~~l~~-~~g~I~vd~~l-~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~ 204 (356)
+|+.++|+.++.... ...+.. ..|.|.+|+.+ +||.|++||.||+.... ..+..|+.+||.+|+.
T Consensus 376 ~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~----------~~vv~ai~eGr~aak~ 445 (457)
T COG0493 376 TVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGA----------ALVVWAIAEGREAAKA 445 (457)
T ss_pred HHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccch----------hhhhhHHhhchHHHHh
Confidence 999999988875432 213444 67999999998 99999999999999864 3567899999999987
Q ss_pred Hc
Q 018416 205 IM 206 (356)
Q Consensus 205 i~ 206 (356)
|.
T Consensus 446 i~ 447 (457)
T COG0493 446 ID 447 (457)
T ss_pred hh
Confidence 64
No 80
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=99.39 E-value=1.5e-12 Score=116.20 Aligned_cols=165 Identities=26% Similarity=0.395 Sum_probs=119.4
Q ss_pred CCCCCCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHH
Q 018416 9 GLSGSDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYE 88 (356)
Q Consensus 9 ~ipG~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~ 88 (356)
...|. .+.|..+|+-+.+..++..+. +.|+|.|+|.|-+++|++.++ .+++|++....+.+...+|||.+++.+.
T Consensus 107 q~E~~-n~~Iv~irDtDsaQllq~kl~--kaK~VlilgnGgia~El~yEl--k~~nv~w~ikd~~IsaTFfdpGaaef~~ 181 (334)
T KOG2755|consen 107 QVEGI-NPKIVGIRDTDSAQLLQCKLV--KAKIVLILGNGGIAMELTYEL--KILNVTWKIKDEGISATFFDPGAAEFYD 181 (334)
T ss_pred eecCC-CceEEEEecCcHHHHHHHHHh--hcceEEEEecCchhHHHHHHh--hcceeEEEecchhhhhcccCccHHHHhH
Confidence 34443 377889999999999999887 689999999999999999988 4789999999999999999999999888
Q ss_pred HHHHhCC------------CEEEeCCe-----------------eeE------------------E-EEcCCCcEEEEEe
Q 018416 89 EYYKSKG------------VKFVKGTV-----------------LSS------------------F-DVDSNGKVVAVNL 120 (356)
Q Consensus 89 ~~l~~~G------------V~v~~~~~-----------------v~~------------------i-~~~~~g~v~~v~~ 120 (356)
..|+..+ ++.+.+.. ... + .+.+...+.....
T Consensus 182 i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ 261 (334)
T KOG2755|consen 182 INLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDK 261 (334)
T ss_pred hhhhcccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccc
Confidence 7772211 11111000 000 0 0000011110111
Q ss_pred CCC--cEEecCeEEEecCCCCCchhhhcc-ccc-ccCcEEEecccccCCCCEEEEccccccC
Q 018416 121 RDG--NRLPTDMVVVGIGIRPNTSLFEGQ-LTL-EKGGIKVTGRLQSSNSSVYAVGDVAAFP 178 (356)
Q Consensus 121 ~~g--~~i~~D~vi~a~G~~p~~~l~~~~-l~~-~~g~I~vd~~l~ts~~~VyAiGD~~~~~ 178 (356)
..+ ..+.||.+++++|+.||+++.-.. +.. ++|+|+||+.|+|+.|++||+||++...
T Consensus 262 ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggikvdd~m~tslpdvFa~gDvctt~ 323 (334)
T KOG2755|consen 262 EKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCTTT 323 (334)
T ss_pred cccccceeeeeEEEeccccCcCceEEecChhhhccccCeeehhhccccccceeeecceeccC
Confidence 111 357899999999999999966544 555 8899999999999999999999998743
No 81
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.36 E-value=1.4e-11 Score=120.83 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=118.3
Q ss_pred cEEEECCchHHHHHH-HHHH----HCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcE
Q 018416 41 NAVVIGGGYIGMECA-ASLV----INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV 115 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A-~~L~----~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v 115 (356)
.=.|++.+.+|+|.+ ..++ +.|++|++++..+..++. .++.+.+.+.+++.|++++++++|++++.. ++.+
T Consensus 217 ~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V 292 (422)
T PRK05329 217 AEAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRV 292 (422)
T ss_pred CCEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEE
Confidence 347899999999999 6665 479999999999988875 378899999999999999999999999863 4555
Q ss_pred EEEEeCCCc--EEecCeEEEecCCCCCchhhhc-------------------------c-c---ccccCcEEEeccccc-
Q 018416 116 VAVNLRDGN--RLPTDMVVVGIGIRPNTSLFEG-------------------------Q-L---TLEKGGIKVTGRLQS- 163 (356)
Q Consensus 116 ~~v~~~~g~--~i~~D~vi~a~G~~p~~~l~~~-------------------------~-l---~~~~g~I~vd~~l~t- 163 (356)
..+...+++ .+++|.+++|+|..+...|..+ . + ....=+|.+|++++.
T Consensus 293 ~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~ 372 (422)
T PRK05329 293 TAVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPL 372 (422)
T ss_pred EEEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCcc
Confidence 555555553 5899999999998766554210 0 0 011235677766664
Q ss_pred ------CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416 164 ------SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 208 (356)
Q Consensus 164 ------s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 208 (356)
..+|+||+|++...+++..-. .....|+..|..|+++|...
T Consensus 373 ~~~g~~~~~nl~a~G~vl~g~d~~~~~----~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 373 DSQGGPVIENLYAAGAVLGGYDPIREG----CGSGVALATALHAAEQIAEE 419 (422)
T ss_pred cCCCCeeccceEEeeehhcCCchHHhC----CCchhHHHHHHHHHHHHHHh
Confidence 579999999999988764210 12346777888888888643
No 82
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.18 E-value=1.8e-10 Score=114.73 Aligned_cols=167 Identities=11% Similarity=0.081 Sum_probs=113.1
Q ss_pred CCccCCCCCCC-CCCe-EEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCH
Q 018416 4 KLEEFGLSGSD-AENV-CYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTP 81 (356)
Q Consensus 4 ~p~~~~ipG~~-~~~v-~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~ 81 (356)
+|+.+++||.+ .++. ++..++.+... .++|+|+|||+|.+|+|+|..|++.+.+|+++.|++.+...
T Consensus 174 ~P~~P~ipG~~~f~G~~iHs~~yr~~~~-------~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~---- 242 (461)
T PLN02172 174 EPNVAHIPGIKSWPGKQIHSHNYRVPDP-------FKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTY---- 242 (461)
T ss_pred CCcCCCCCCcccCCceEEEecccCCccc-------cCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccccc----
Confidence 68889999974 3442 22222222221 26899999999999999999999999999999997643210
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcccccccCcEEEecc-
Q 018416 82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTGR- 160 (356)
Q Consensus 82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd~~- 160 (356)
+.+.....++..+..|..+.. ++ .|++.||+.+++|.||+|+|.+|+..+++. .+.|.+|+.
T Consensus 243 -------~~~~~~~~~v~~~~~I~~~~~--~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~-----~~~i~v~~~~ 305 (461)
T PLN02172 243 -------EKLPVPQNNLWMHSEIDTAHE--DG---SIVFKNGKVVYADTIVHCTGYKYHFPFLET-----NGYMRIDENR 305 (461)
T ss_pred -------ccCcCCCCceEECCcccceec--CC---eEEECCCCCccCCEEEECCcCCccccccCc-----ccceeeCCCc
Confidence 111122344555666766643 34 377899999999999999999999998764 233444421
Q ss_pred -----ccc---C-CCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416 161 -----LQS---S-NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 209 (356)
Q Consensus 161 -----l~t---s-~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 209 (356)
.++ . .|+++.+|=.... .....+..|++.+|..+.|..
T Consensus 306 v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 306 VEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred chhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence 121 3 4899999955322 123456779999999888764
No 83
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.11 E-value=1.1e-09 Score=102.41 Aligned_cols=99 Identities=14% Similarity=0.243 Sum_probs=80.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc---c--------CCc----cCCHHHHHHHHHHHHhCCCEEEeCCeee
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH---C--------MAR----LFTPKIASYYEEYYKSKGVKFVKGTVLS 105 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~---~--------l~~----~~d~~~~~~~~~~l~~~GV~v~~~~~v~ 105 (356)
+++|||||+.|+++|..|+++|.+|+++++.+. + .+. ..+.++...+.+.+++.|+++++ ++++
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 689999999999999999999999999998651 1 121 12368888999999999999998 8899
Q ss_pred EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+++..+ +. ..+++.+++++.+|.+|+|+|.+|+..
T Consensus 81 ~v~~~~-~~-~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 81 KVDLSD-RP-FKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEecC-Ce-eEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 988632 22 356677888999999999999988654
No 84
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.10 E-value=2.8e-09 Score=112.37 Aligned_cols=169 Identities=21% Similarity=0.209 Sum_probs=107.7
Q ss_pred CCCccCCCCCCCCCCeEEeCCHHHHHHHHHHH-----h-cCCCCcEEEECCchHHHHHHHHHHH----------------
Q 018416 3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVM-----K-SCSGGNAVVIGGGYIGMECAASLVI---------------- 60 (356)
Q Consensus 3 ~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l-----~-~~~~~~vvVvGgG~iGlE~A~~L~~---------------- 60 (356)
.+|+.+++||.+.++|++..++-...+..... . ...+++|||||||++|+|+|....+
T Consensus 508 ~kpr~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~ 587 (1028)
T PRK06567 508 GQPKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEK 587 (1028)
T ss_pred CCCCCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhh
Confidence 47999999999999998543321111110000 0 0135899999999999999984332
Q ss_pred -----------------------------------CCCcEEEEeeCCcc-CCcc-C-CHHHHHHHHHHHHhCCCEEEeCC
Q 018416 61 -----------------------------------NKINVTMVFPEAHC-MARL-F-TPKIASYYEEYYKSKGVKFVKGT 102 (356)
Q Consensus 61 -----------------------------------~G~~Vtlv~~~~~~-l~~~-~-d~~~~~~~~~~l~~~GV~v~~~~ 102 (356)
.|. ||++.|+..- +|.. + .+|+ + ...+.||+++.+.
T Consensus 588 ~~~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~~~~eEv----~-~A~eEGV~f~~~~ 661 (1028)
T PRK06567 588 DLTEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYKLNHEEL----I-YALALGVDFKENM 661 (1028)
T ss_pred hcccccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCCCCHHHH----H-HHHHcCcEEEecC
Confidence 232 8888776532 2210 1 1222 2 2345699999999
Q ss_pred eeeEEEEcCCCcEEEEEeC--------------C-C---------------cEEecCeEEEecCCCCCchhhhccccccc
Q 018416 103 VLSSFDVDSNGKVVAVNLR--------------D-G---------------NRLPTDMVVVGIGIRPNTSLFEGQLTLEK 152 (356)
Q Consensus 103 ~v~~i~~~~~g~v~~v~~~--------------~-g---------------~~i~~D~vi~a~G~~p~~~l~~~~l~~~~ 152 (356)
.+.++..+++|++..+++. + + .+++||.||+|+|..||+.+...
T Consensus 662 ~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~~------ 735 (1028)
T PRK06567 662 QPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDED------ 735 (1028)
T ss_pred CcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccccc------
Confidence 9999987666777765442 1 1 46899999999999999987421
Q ss_pred CcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
+..+-++.+++|+- .+-.|+.+|+.++.+|.
T Consensus 736 -----~~s~~~d~~~~f~G------------------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 736 -----KYSYFGDCNPKYSG------------------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred -----ccccccCCCCcccc------------------HHHHHHHHHHhHHHHHH
Confidence 00122233444432 35578889999988883
No 85
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.06 E-value=2.6e-10 Score=118.25 Aligned_cols=190 Identities=18% Similarity=0.266 Sum_probs=111.2
Q ss_pred CCCccCCCCCCCCCCeEEeCCHHHHHHHHHHHh--------cCCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCc
Q 018416 3 LKLEEFGLSGSDAENVCYLRDLADANRLVNVMK--------SCSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAH 73 (356)
Q Consensus 3 ~~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~--------~~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~ 73 (356)
-.|+.+++||.|+++|+.--.+-... -+..++ +.++|+|+|||||..|-+|-..-.|+|++ |.-++--|+
T Consensus 1881 t~prdlpv~grd~kgv~fame~l~~n-tk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~ 1959 (2142)
T KOG0399|consen 1881 TTPRDLPVPGRDLKGVHFAMEFLEKN-TKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQ 1959 (2142)
T ss_pred CCCcCCCCCCccccccHHHHHHHHHh-HHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCC
Confidence 47999999999999996321111111 111221 12689999999999999999999999985 444554443
Q ss_pred cC---------C---ccCCHHHHHHHHHHHHhCCCEEEeCC-eeeEEEE------------------cCCCcEEEEEeCC
Q 018416 74 CM---------A---RLFTPKIASYYEEYYKSKGVKFVKGT-VLSSFDV------------------DSNGKVVAVNLRD 122 (356)
Q Consensus 74 ~l---------~---~~~d~~~~~~~~~~l~~~GV~v~~~~-~v~~i~~------------------~~~g~v~~v~~~~ 122 (356)
+- | +.|--+....-.+. ..|-+.++-. -.+++.+ ++.|+..-++..+
T Consensus 1960 pp~~ra~~npwpqwprvfrvdygh~e~~~--~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~ 2037 (2142)
T KOG0399|consen 1960 PPPERAPDNPWPQWPRVFRVDYGHAEAKE--HYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINN 2037 (2142)
T ss_pred CCcccCCCCCCccCceEEEeecchHHHHH--HhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCC
Confidence 32 1 11111111111111 1121111111 1122333 3334333333333
Q ss_pred C-cEEecCeEEEecCCCC-Cchhhhcc-ccc-ccCcEEE-ecccccCCCCEEEEccccccCccccCcccccccHHHHHHH
Q 018416 123 G-NRLPTDMVVVGIGIRP-NTSLFEGQ-LTL-EKGGIKV-TGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKS 197 (356)
Q Consensus 123 g-~~i~~D~vi~a~G~~p-~~~l~~~~-l~~-~~g~I~v-d~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~ 197 (356)
. +.++||+||++.|+.. .....++. ++. .++.|.. ++.+.|+++.|||+|||-..... +..|+++
T Consensus 2038 see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqsl----------vvwai~e 2107 (2142)
T KOG0399|consen 2038 SEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSL----------VVWAIQE 2107 (2142)
T ss_pred cceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCceE----------EEEEehh
Confidence 3 4589999999999764 44444433 554 4555654 46688999999999999886543 3357778
Q ss_pred HHHHHHHH
Q 018416 198 AKHAVAAI 205 (356)
Q Consensus 198 g~~aa~~i 205 (356)
||.+|+.+
T Consensus 2108 grq~a~~v 2115 (2142)
T KOG0399|consen 2108 GRQAARQV 2115 (2142)
T ss_pred hhHHHHHH
Confidence 88888765
No 86
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.94 E-value=5.3e-08 Score=89.81 Aligned_cols=165 Identities=18% Similarity=0.183 Sum_probs=108.0
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------c--------------------------C-CH
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------L--------------------------F-TP 81 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------~--------------------------~-d~ 81 (356)
...|+|||+|+.|+-+|..|++.|.+|+++++.+.+... . . ..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 468999999999999999999999999999987654210 0 1 12
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----------CCcEEecCeEEEecCCCCCch--hhhccc
Q 018416 82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS--LFEGQL 148 (356)
Q Consensus 82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~--l~~~~l 148 (356)
++...+.+..++.|++++.++.+.++..++++++..+... +..++.++.||.|+|...... +.+...
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~~ 184 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARKGP 184 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHHcC
Confidence 4445566677788999999999999876444466555432 224799999999999654432 111100
Q ss_pred ----cc--------ccC-cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 149 ----TL--------EKG-GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 149 ----~~--------~~g-~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
.. +.+ ...|+.+-+ -.|++|++|-++... +|.++.=|.-..=.-.|+.||+.++.
T Consensus 185 ~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~---~~~~rmg~~fg~m~~sg~~~a~~~~~ 252 (257)
T PRK04176 185 ELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAV---HGLPRMGPIFGGMLLSGKKVAELILE 252 (257)
T ss_pred CcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhh---cCCCccCchhHhHHHhHHHHHHHHHH
Confidence 00 011 111221111 379999999988753 25555444444445678888887764
No 87
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.92 E-value=1.6e-08 Score=96.22 Aligned_cols=100 Identities=19% Similarity=0.283 Sum_probs=82.1
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------ 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------ 77 (356)
..|+|||||+.|+-+|..++++|.+|+|+++.+.+..+
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 57999999999999999999999999999998654211
Q ss_pred -------------------cC-----CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416 78 -------------------LF-----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 133 (356)
Q Consensus 78 -------------------~~-----d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 133 (356)
.| ..++.+.+..++++.||+++++++|.+++.++ ....+.+.+|+++.||.+|+
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ceEEEEcCCCCEEEccEEEE
Confidence 01 13467778889999999999999999998743 33678889999999999999
Q ss_pred ecC--CCCCc
Q 018416 134 GIG--IRPNT 141 (356)
Q Consensus 134 a~G--~~p~~ 141 (356)
|+| .-|.+
T Consensus 162 AtGG~S~P~l 171 (408)
T COG2081 162 ATGGKSWPKL 171 (408)
T ss_pred ecCCcCCCCC
Confidence 999 44533
No 88
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.89 E-value=1.6e-07 Score=86.34 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=109.2
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC----------cc---------------------------CCH
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------RL---------------------------FTP 81 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~----------~~---------------------------~d~ 81 (356)
.-.|+|||+|+.|+-+|..|++.|.+|+++|+.+.+.. .. ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 46899999999999999999999999999999865420 00 012
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC-cEEEEEeC-----------CCcEEecCeEEEecCCCCC-chhhhcc-
Q 018416 82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG-KVVAVNLR-----------DGNRLPTDMVVVGIGIRPN-TSLFEGQ- 147 (356)
Q Consensus 82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g-~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~-~~l~~~~- 147 (356)
++.+.+.+...+.|++++.++.++++..++++ ++..+.+. +..+++++.||.|+|.... ..++...
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~~ 180 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKKI 180 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHHc
Confidence 34555666777889999999999998763332 56666553 2247899999999996543 3333221
Q ss_pred -ccc-c-----cCcEEEe--cc---ccc--CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 148 -LTL-E-----KGGIKVT--GR---LQS--SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 148 -l~~-~-----~g~I~vd--~~---l~t--s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
+.. . .+...++ |. -.| -+|++|++|-.+... .|.+++=|.-..=.-.|+.||+.++.
T Consensus 181 ~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~---~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 181 VLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAV---HGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred CcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhh---cCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 111 0 0111111 00 023 489999999988743 35555444444445678888887753
No 89
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.82 E-value=1e-07 Score=96.63 Aligned_cols=101 Identities=24% Similarity=0.324 Sum_probs=81.6
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC--Ccc-----------CCccCCHHHHHHHHHHHHhCCCEEEeCCeee
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHC-----------MARLFTPKIASYYEEYYKSKGVKFVKGTVLS 105 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~--~~~-----------l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~ 105 (356)
..+++|||||+.|+.+|..+++.|.+|++++.. .++ .+....+++.+.+.+.+++.|++++++++++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 458999999999999999999999999999753 111 0111356788899999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416 106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 141 (356)
++...+ + ...+.+.+|+++.+|.+|+|+|.+|..
T Consensus 291 ~I~~~~-~-~~~V~~~~g~~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAA-G-LIEVELANGAVLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecC-C-eEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 997632 2 245677888899999999999998754
No 90
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.82 E-value=5.6e-08 Score=98.52 Aligned_cols=102 Identities=21% Similarity=0.312 Sum_probs=81.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC--CccC-----------CccCCHHHHHHHHHHHHhCCCEEEeCCee
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL 104 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~--~~~l-----------~~~~d~~~~~~~~~~l~~~GV~v~~~~~v 104 (356)
...+|+|||||+.|+.+|..|++.|.+|++++.. .++. +....+++.+.+.+.+++.||+++.+++|
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V 290 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRA 290 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEE
Confidence 4578999999999999999999999999999642 1111 11135678888889999999999999999
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416 105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 141 (356)
+++..++ + ...+.+++|+.+.+|.+++|+|.+|..
T Consensus 291 ~~I~~~~-~-~~~v~~~~g~~i~~d~lIlAtGa~~~~ 325 (515)
T TIGR03140 291 KKIETED-G-LIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEEEecC-C-eEEEEECCCCEEEeCEEEECCCCCcCC
Confidence 9997632 2 235667788899999999999988753
No 91
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.80 E-value=3.8e-08 Score=96.45 Aligned_cols=100 Identities=15% Similarity=0.272 Sum_probs=74.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCccC-C-ccCCHHHH---------HHHHHHHHhCCCEEEeCCee
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCM-A-RLFTPKIA---------SYYEEYYKSKGVKFVKGTVL 104 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~l-~-~~~d~~~~---------~~~~~~l~~~GV~v~~~~~v 104 (356)
..+++||||||+.|+++|..|+++|. +||++++.++.. . ..+..... ..-.+.+++.||+++.++.+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V 81 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTI 81 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEE
Confidence 35789999999999999999999886 799998876531 0 01222111 01134567889999999999
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416 105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 141 (356)
+.++. + . ..+.+++|+++.+|.+|+|||.+|..
T Consensus 82 ~~id~-~-~--~~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 82 KTLGR-D-T--RELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEEEC-C-C--CEEEECCCCEEEcCEEEEccCCCCCC
Confidence 99975 2 2 24667889999999999999999854
No 92
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.78 E-value=4.6e-08 Score=97.19 Aligned_cols=101 Identities=19% Similarity=0.302 Sum_probs=73.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCcc------CCcc----CC--HHHHHHHHHHHHhCCCEEEeCCeee
Q 018416 40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC------MARL----FT--PKIASYYEEYYKSKGVKFVKGTVLS 105 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~------l~~~----~d--~~~~~~~~~~l~~~GV~v~~~~~v~ 105 (356)
+++||||||+.|+++|..|++++ .+|||+++.+.+ ++.. .+ .++.....+.+++.||+++.++.++
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 47999999999999999999985 489999998763 1111 11 1233344566888999999999999
Q ss_pred EEEEcCCCcEEEEEe-CCCcEEe--cCeEEEecCCCCCch
Q 018416 106 SFDVDSNGKVVAVNL-RDGNRLP--TDMVVVGIGIRPNTS 142 (356)
Q Consensus 106 ~i~~~~~g~v~~v~~-~~g~~i~--~D~vi~a~G~~p~~~ 142 (356)
+++.+ +.. ..+.. .++++++ +|.+|+|+|.+|+..
T Consensus 81 ~id~~-~~~-v~~~~~~~~~~~~~~yd~lviAtG~~~~~~ 118 (444)
T PRK09564 81 KVDAK-NKT-ITVKNLKTGSIFNDTYDKLMIATGARPIIP 118 (444)
T ss_pred EEECC-CCE-EEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence 99762 332 23332 2356666 999999999998754
No 93
>PRK06847 hypothetical protein; Provisional
Probab=98.76 E-value=1.2e-07 Score=91.78 Aligned_cols=103 Identities=23% Similarity=0.365 Sum_probs=80.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------------
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR---------------------------------------- 77 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~---------------------------------------- 77 (356)
+.++|+|||||+.|+-+|..|++.|++|+++|+.+.+-..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 3578999999999999999999999999999987531000
Q ss_pred ----cC-----------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC
Q 018416 78 ----LF-----------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136 (356)
Q Consensus 78 ----~~-----------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G 136 (356)
.+ .+++.+.+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.+|.||.|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vI~AdG 160 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG--VTVTFSDGTTGRYDLVVGADG 160 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE--EEEEEcCCCEEEcCEEEECcC
Confidence 00 0344566677777789999999999999863333 457788899999999999999
Q ss_pred CCCCch
Q 018416 137 IRPNTS 142 (356)
Q Consensus 137 ~~p~~~ 142 (356)
..+...
T Consensus 161 ~~s~~r 166 (375)
T PRK06847 161 LYSKVR 166 (375)
T ss_pred CCcchh
Confidence 877653
No 94
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=98.75 E-value=1.8e-07 Score=86.30 Aligned_cols=193 Identities=16% Similarity=0.216 Sum_probs=133.8
Q ss_pred CCCCccCCCCCC----CCCCeEEeCCHHHHHHHHHHHhcCCCCcEEE---------ECCchHHHHHHHH-HHHCCC--cE
Q 018416 2 ALKLEEFGLSGS----DAENVCYLRDLADANRLVNVMKSCSGGNAVV---------IGGGYIGMECAAS-LVINKI--NV 65 (356)
Q Consensus 2 ~~~p~~~~ipG~----~~~~v~~l~~~~da~~i~~~l~~~~~~~vvV---------vGgG~iGlE~A~~-L~~~G~--~V 65 (356)
-|+.+.-.|+|. |.|+|.+..+..-+++..+.+...+..+++- -|+---.+-+++. ++++|. ++
T Consensus 142 Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a 221 (446)
T KOG3851|consen 142 GIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNA 221 (446)
T ss_pred eceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccc
Confidence 467777778874 6789999999999999888887654444322 2444444445544 555665 24
Q ss_pred EEE--eeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-C--cEEecCeEEEecCCCCC
Q 018416 66 TMV--FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 66 tlv--~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~vi~a~G~~p~ 140 (356)
.++ ..-+.++. -...++.+++..++++|++.....+.++..++...+.+ .+.+ | ++++++++-+....++.
T Consensus 222 ~iiy~Tsl~~iFg---Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe-~L~kPG~t~ei~yslLHv~Ppms~p 297 (446)
T KOG3851|consen 222 NIIYNTSLPTIFG---VKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFE-NLDKPGVTEEIEYSLLHVTPPMSTP 297 (446)
T ss_pred cEEEecCccceec---HHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHH-hcCCCCceeEEeeeeeeccCCCCCh
Confidence 443 33344332 25677888999999999999999999987633221111 1222 4 47899999999999888
Q ss_pred chhhhcccccccCcEEEec-cccc-CCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 141 TSLFEGQLTLEKGGIKVTG-RLQS-SNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 141 ~~l~~~~l~~~~g~I~vd~-~l~t-s~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
..+....+....|++.||. .+|. ..||||+||||...|.. ..++....|...+-.|+.
T Consensus 298 e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc~n~Pns--------KTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851|consen 298 EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNS--------KTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred hhhhcCcccCcccceecChhhhccccCCCceeeccccCCCch--------hhHHHHHhcCchhhhhHH
Confidence 7777776777889999995 5776 79999999999998865 334444456677777765
No 95
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.74 E-value=6.4e-08 Score=94.87 Aligned_cols=99 Identities=20% Similarity=0.325 Sum_probs=67.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------c-------C----
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------L-------F---- 79 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------~-------~---- 79 (356)
+|+|||||+.|+-+|..+++.|.+|+|+|+.+++..+ + +
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999998544111 0 0
Q ss_pred --------------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416 80 --------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 133 (356)
Q Consensus 80 --------------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 133 (356)
..++.+.+.+.+++.||+++++++|.+++. +++.+..|++++++++.+|.||+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~-~~~~~f~v~~~~~~~~~a~~vIL 160 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK-KEDGVFGVKTKNGGEYEADAVIL 160 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE-ETTEEEEEEETTTEEEEESEEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee-cCCceeEeeccCcccccCCEEEE
Confidence 123556678888999999999999999987 34555678887788999999999
Q ss_pred ecCCCCC
Q 018416 134 GIGIRPN 140 (356)
Q Consensus 134 a~G~~p~ 140 (356)
|+|-.+.
T Consensus 161 AtGG~S~ 167 (409)
T PF03486_consen 161 ATGGKSY 167 (409)
T ss_dssp ----SSS
T ss_pred ecCCCCc
Confidence 9996543
No 96
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.74 E-value=4.5e-08 Score=99.14 Aligned_cols=181 Identities=16% Similarity=0.248 Sum_probs=92.8
Q ss_pred CCccCC--CCCCCC--CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-CCcc
Q 018416 4 KLEEFG--LSGSDA--ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-MARL 78 (356)
Q Consensus 4 ~p~~~~--ipG~~~--~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-l~~~ 78 (356)
+|+.+. +||.+. ..+++-++..+.+. .++|+|+|||+|.+|+++|..|++...+|++..|+... +++.
T Consensus 151 ~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~-------f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~ 223 (531)
T PF00743_consen 151 KPNIPEPSFPGLEKFKGEIIHSKDYRDPEP-------FKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRY 223 (531)
T ss_dssp CESB-----CTGGGHCSEEEEGGG--TGGG-------GTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------
T ss_pred CCCCChhhhhhhhcCCeeEEccccCcChhh-------cCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccc
Confidence 566663 888652 23454444544433 37999999999999999999999999999998887542 2221
Q ss_pred C----------------------CHHHHHHH-HHHHHh------CC--------------------------CEEEeCCe
Q 018416 79 F----------------------TPKIASYY-EEYYKS------KG--------------------------VKFVKGTV 103 (356)
Q Consensus 79 ~----------------------d~~~~~~~-~~~l~~------~G--------------------------V~v~~~~~ 103 (356)
. +..+...+ ++.+.+ .| |++. ..
T Consensus 224 ~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk--~~ 301 (531)
T PF00743_consen 224 WDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK--PD 301 (531)
T ss_dssp ---------------------------------------------------------------------------E--E-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence 1 11111111 111110 11 1111 12
Q ss_pred eeEEEEcCCCcEEEEEeCCCcEE-ecCeEEEecCCCCCchhhhcccc-cccCcEEEecccc---cCCCCEEEEccccccC
Q 018416 104 LSSFDVDSNGKVVAVNLRDGNRL-PTDMVVVGIGIRPNTSLFEGQLT-LEKGGIKVTGRLQ---SSNSSVYAVGDVAAFP 178 (356)
Q Consensus 104 v~~i~~~~~g~v~~v~~~~g~~i-~~D~vi~a~G~~p~~~l~~~~l~-~~~g~I~vd~~l~---ts~~~VyAiGD~~~~~ 178 (356)
|.++.+ .++.+.||+++ ++|.||+|||.+....++++.+. ..++.+..-.++- -..|.+..+|=+-..
T Consensus 302 I~~~~~------~~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~- 374 (531)
T PF00743_consen 302 IKRFTE------NSVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF- 374 (531)
T ss_dssp EEEE-S------SEEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-
T ss_pred cccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 333321 14678899875 69999999999988888876533 3344333333221 235889999976421
Q ss_pred ccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416 179 LKLLGETRRLEHVDSARKSAKHAVAAIMEPD 209 (356)
Q Consensus 179 ~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 209 (356)
. +....+..|++.++.-+.|..
T Consensus 375 g---------~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 375 G---------SIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp S----------HHHHHHHHHHHHHHHHTTSS
T ss_pred c---------ccccccccccccccccccccc
Confidence 1 223457789999999887754
No 97
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.72 E-value=3.5e-07 Score=91.33 Aligned_cols=136 Identities=21% Similarity=0.273 Sum_probs=89.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc---------------------------------------
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL--------------------------------------- 78 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~--------------------------------------- 78 (356)
..++|+|||+|+.|+-+|..|.+.|.+|+++|+.+.+...+
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 46899999999999999999999999999999875431110
Q ss_pred ----C----------------CHHHHHHHHHHHHhCCCE--EEeCCeeeEEEEcCCCcEEEEEeCC--Cc--EEecCeEE
Q 018416 79 ----F----------------TPKIASYYEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRD--GN--RLPTDMVV 132 (356)
Q Consensus 79 ----~----------------d~~~~~~~~~~l~~~GV~--v~~~~~v~~i~~~~~g~v~~v~~~~--g~--~i~~D~vi 132 (356)
+ ..++.+.+++..+..|++ ++++++|++++.. ++.. .|++.+ +. +..+|.||
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~w-~V~~~~~~~~~~~~~~d~VI 166 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGKW-RVQSKNSGGFSKDEIFDAVV 166 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCeE-EEEEEcCCCceEEEEcCEEE
Confidence 0 045777778888888988 8899999999873 3332 344432 22 45799999
Q ss_pred EecC--CCCCchhhhcccccccCcEEEeccccc----CCCCEEEEccccc
Q 018416 133 VGIG--IRPNTSLFEGQLTLEKGGIKVTGRLQS----SNSSVYAVGDVAA 176 (356)
Q Consensus 133 ~a~G--~~p~~~l~~~~l~~~~g~I~vd~~l~t----s~~~VyAiGD~~~ 176 (356)
+|+| ..|+..-....-......+-... +++ ....|..+|-..+
T Consensus 167 vAtG~~~~P~~P~ipG~~~f~G~~iHs~~-yr~~~~~~gk~VvVVG~G~S 215 (461)
T PLN02172 167 VCNGHYTEPNVAHIPGIKSWPGKQIHSHN-YRVPDPFKNEVVVVIGNFAS 215 (461)
T ss_pred EeccCCCCCcCCCCCCcccCCceEEEecc-cCCccccCCCEEEEECCCcC
Confidence 9999 46664432221111211122222 222 3467888885543
No 98
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.71 E-value=1.2e-07 Score=83.71 Aligned_cols=98 Identities=29% Similarity=0.454 Sum_probs=67.9
Q ss_pred EEECCchHHHHHHHHHHHCCCc-EEEEeeCCccCC--------------cc------------C----------------
Q 018416 43 VVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMA--------------RL------------F---------------- 79 (356)
Q Consensus 43 vVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~l~--------------~~------------~---------------- 79 (356)
+|||+|+.|+-+|..|.+.|.+ |+++|+.+.+.. .. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999999854310 00 0
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC--CCCch
Q 018416 80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI--RPNTS 142 (356)
Q Consensus 80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~--~p~~~ 142 (356)
-+++.+++++..++.+++++++++|++++.++++ -.+++.+++++.||.||+|+|. .|+..
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 1245577788888899999999999999986555 4688888889999999999996 55543
No 99
>PRK07236 hypothetical protein; Provisional
Probab=98.68 E-value=1.6e-07 Score=91.68 Aligned_cols=102 Identities=25% Similarity=0.359 Sum_probs=75.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----cCCHHHHHHHHH-----------------------
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----LFTPKIASYYEE----------------------- 89 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----~~d~~~~~~~~~----------------------- 89 (356)
...+|+|||||+.|+.+|..|++.|++|+|+|+.+..... .+.+...+.+.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g 84 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDG 84 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCC
Confidence 4679999999999999999999999999999998754321 123333333222
Q ss_pred --------------------HHHh--CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416 90 --------------------YYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 90 --------------------~l~~--~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 141 (356)
.|.+ .+++++.++++++++.++++ ..+.+++|+++.+|+||.|-|.....
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~--v~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 85 RVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR--VTARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred CEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe--EEEEECCCCEEEeCEEEECCCCCchH
Confidence 1111 13568999999999864333 45788999999999999999976654
No 100
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.63 E-value=1.2e-07 Score=102.02 Aligned_cols=93 Identities=23% Similarity=0.203 Sum_probs=74.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------c-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+|+|+|||+|+.|+.+|..|+++|++||++++.+.+.. . .++.++.+...+.+++.||++++++.+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 579999999999999999999999999999999875432 1 15677777778889999999999875421
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCC-CC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR-PN 140 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~-p~ 140 (356)
.+.+++.....+|.|++|+|.. |.
T Consensus 382 -------dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 382 -------TATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred -------EEeHHHhccccCCEEEEeCCCCCCC
Confidence 2445555566799999999984 54
No 101
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.63 E-value=1.1e-07 Score=91.73 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=70.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++++|||+|++|+++|..|++.|.+|+++++.+.+... .++.+......+.+.+.|++++.++.+..+..
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~~ 96 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGEP 96 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeeccc
Confidence 5789999999999999999999999999999998776421 12334444455667778999999988765432
Q ss_pred ---cCCCcEE--EEEeCCCcEEecCeEEEecCCC
Q 018416 110 ---DSNGKVV--AVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 110 ---~~~g~v~--~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
..++... .+.. ++..+.+|.||+|+|..
T Consensus 97 ~~~~~~~~~~~~~~~~-~~~~~~~d~lviAtGs~ 129 (352)
T PRK12770 97 LHEEEGDEFVERIVSL-EELVKKYDAVLIATGTW 129 (352)
T ss_pred cccccccccccccCCH-HHHHhhCCEEEEEeCCC
Confidence 0111110 0111 12247899999999984
No 102
>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....
Probab=98.61 E-value=2.5e-08 Score=79.76 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=59.3
Q ss_pred EEEecCceEEEeecccceEEEEc------------------cCCCCceEEEEe--eCCeEEEEEEeCCCHHH-HHHHHHH
Q 018416 221 YSRVFTLSWQFYGDNVGEVVHYG------------------NFSGTTFGAYWV--NKGRLVGSFLEGGTKEE-YEAIAKA 279 (356)
Q Consensus 221 ~~~~~~~~~~~~G~~~~~~~~~g------------------~~~~~~~~~~~~--~~g~ilGa~~vg~~~~~-~~~~a~a 279 (356)
+..++++.++++|+++.++...+ ..+..+|.|+.. ++|+|+|+|++|+++.+ ++.++.+
T Consensus 3 ~~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~a 82 (110)
T PF02852_consen 3 TVVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELALA 82 (110)
T ss_dssp EEEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHHHH
T ss_pred EEEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHHHH
Confidence 45678899999999876432111 112234666654 58999999999988665 5788999
Q ss_pred HHcCCCcCcHHHHhhcCCCcccCcCCC
Q 018416 280 TRLQPVVEDLAELETQGLGFALAVSQK 306 (356)
Q Consensus 280 i~~~~~~~dl~~l~~~~~~yap~~~~~ 306 (356)
|++++|++++.+ . +.|+|+|++.
T Consensus 83 i~~~~t~~~l~~-~---~~~~Pt~se~ 105 (110)
T PF02852_consen 83 IQNGLTVEDLAD-D---IFYHPTFSEA 105 (110)
T ss_dssp HHTTSBHHHHHT-S---BSSSTSTGHH
T ss_pred HHcCCCHHHHhC-C---eeeCCChhHH
Confidence 999999997555 3 5899999864
No 103
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.60 E-value=3.1e-07 Score=90.91 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=73.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccC---------C-HHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF---------T-PKIASYYEEYYKSKGVKFVKGTVLSSF 107 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~---------d-~~~~~~~~~~l~~~GV~v~~~~~v~~i 107 (356)
..+++||||||+.|+.+|..|.+.+.+||||++.+...-..+ + .++...+.+.+++.+++++. .+|++|
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~I 87 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDV 87 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEE
Confidence 457999999999999999999877889999999876421111 1 22334456667778898875 578899
Q ss_pred EEcCCCcEEEEEe--------CCCcEEecCeEEEecCCCCCch
Q 018416 108 DVDSNGKVVAVNL--------RDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 108 ~~~~~g~v~~v~~--------~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+. ++..+ .+.. .+|+++++|.+|+|+|.+|+..
T Consensus 88 d~-~~~~v-~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~ 128 (424)
T PTZ00318 88 DF-EEKRV-KCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF 128 (424)
T ss_pred Ec-CCCEE-EEecccccccccCCceEecCCEEEECCCcccCCC
Confidence 75 23322 2211 4567899999999999987643
No 104
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.60 E-value=1.7e-07 Score=99.43 Aligned_cols=97 Identities=21% Similarity=0.384 Sum_probs=74.8
Q ss_pred EEEECCchHHHHHHHHHHHC---CCcEEEEeeCCccC------CccCC-----HHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416 42 AVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCM------ARLFT-----PKIASYYEEYYKSKGVKFVKGTVLSSF 107 (356)
Q Consensus 42 vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~l------~~~~d-----~~~~~~~~~~l~~~GV~v~~~~~v~~i 107 (356)
+||||+|+.|+.+|..|+++ +.+|||+++.+++. +.++. +++.....+.++++||++++++.|+++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 68999999999999999876 46899999988742 11111 222223456788899999999999999
Q ss_pred EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+.. . ..|.+.+|+++++|.+|+|+|.+|+..
T Consensus 81 d~~--~--k~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 81 DTD--Q--KQVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred ECC--C--CEEEECCCcEeeCCEEEECCCCCcCCC
Confidence 752 2 246678899999999999999988754
No 105
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.60 E-value=2.5e-07 Score=89.45 Aligned_cols=97 Identities=21% Similarity=0.318 Sum_probs=73.2
Q ss_pred cEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCccC-CccC---------CHHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416 41 NAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHCM-ARLF---------TPKIASYYEEYYKSKGVKFVKGTVLSSF 107 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~l-~~~~---------d~~~~~~~~~~l~~~GV~v~~~~~v~~i 107 (356)
+|||||||+.|+.+|..|+++ +.+|||+++.+... .+.+ ..++.....+.+++.||+++.+ .++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999999644 68999999887532 1111 1234344566778889999875 78888
Q ss_pred EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+.+ ++ .|.+.+|+++++|.+|+|+|.+|+..
T Consensus 80 d~~--~~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 80 DPD--RR--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred ecc--cC--EEEECCCCcccccEEEEccCCCCCCC
Confidence 752 22 47778898999999999999988754
No 106
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.58 E-value=1.5e-07 Score=94.02 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=71.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++|+|||||+.|+++|..|+++|++|+++++.+.+. +. .++.++.....+.+++.||++++++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR--- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC---
Confidence 46899999999999999999999999999999987752 11 14667888888889999999999987521
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
.+.+.+. .+.+|.||+|+|..
T Consensus 216 -------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 -------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred -------ccCHHHH-HhhCCEEEEccCCC
Confidence 1222222 37899999999985
No 107
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.57 E-value=8.6e-07 Score=82.43 Aligned_cols=97 Identities=19% Similarity=0.289 Sum_probs=74.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------- 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------- 77 (356)
.|+|||||+.|+-+|..|++.|.+|+++|+.+.+...
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 5899999999999999999999999999998642110
Q ss_pred -----cC-CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCcEEecCeEEEecCCCC
Q 018416 78 -----LF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 78 -----~~-d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G~~p 139 (356)
.+ -.++.+.+.+.+++.|++++.+++++++..++ +.+ .+.+. ++.++.+|.||.|.|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRV-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEE-EEEEcCccEEEEeCEEEECCCcch
Confidence 01 12455667777888999999999999987633 332 34333 346799999999999764
No 108
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.57 E-value=3.5e-07 Score=97.71 Aligned_cols=91 Identities=27% Similarity=0.304 Sum_probs=70.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------cc-CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------RL-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+|+|+|||||+.|+.+|..|+++|++|+|+++.+.+.. .. ++.+....-.+.+++.||++++++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~- 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT- 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence 468999999999999999999999999999999876422 11 35556666667788899999999876 221
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
+.+.+...+|.||+|+|.++.
T Consensus 616 ----------le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 ----------VEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred ----------hhhheeccCCEEEECcCCCCC
Confidence 223345569999999998754
No 109
>PRK10262 thioredoxin reductase; Provisional
Probab=98.55 E-value=2.4e-06 Score=81.24 Aligned_cols=100 Identities=11% Similarity=0.167 Sum_probs=71.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC---cc--------CCc----cCCHHHHHHHHHHHHhCCCEEEeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA---HC--------MAR----LFTPKIASYYEEYYKSKGVKFVKGT 102 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~---~~--------l~~----~~d~~~~~~~~~~l~~~GV~v~~~~ 102 (356)
+.++++|||||+.|+.+|..|+++|.+|++++... .+ ++. ...+++.+.+.+.....+++++.+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 56899999999999999999999999999997432 11 011 123456777778888888888765
Q ss_pred eeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416 103 VLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 103 ~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 141 (356)
.++.++. .++. ..+..+ ...+.+|.||+|+|.+|+.
T Consensus 84 ~v~~v~~-~~~~-~~v~~~-~~~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 HINKVDL-QNRP-FRLTGD-SGEYTCDALIIATGASARY 119 (321)
T ss_pred EEEEEEe-cCCe-EEEEec-CCEEEECEEEECCCCCCCC
Confidence 4666765 2332 234333 3478999999999998864
No 110
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.54 E-value=4.1e-07 Score=96.93 Aligned_cols=100 Identities=17% Similarity=0.337 Sum_probs=76.5
Q ss_pred CCcEEEECCchHHHHHHHHHHHC----CCcEEEEeeCCccC------CccC----CHHHHHHHHHHHHhCCCEEEeCCee
Q 018416 39 GGNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCM------ARLF----TPKIASYYEEYYKSKGVKFVKGTVL 104 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~----G~~Vtlv~~~~~~l------~~~~----d~~~~~~~~~~l~~~GV~v~~~~~v 104 (356)
.+++||||+|+.|+.+|..|.++ +.+||++++.+++. +..+ ..++.....+.+++.||+++.++.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V 82 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERA 82 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEE
Confidence 46899999999999999999865 47899999987752 1111 1223333356778899999999999
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
++++. +. ..|.+.+|+++++|.+|+|||.+|...
T Consensus 83 ~~Id~--~~--~~V~~~~G~~i~yD~LVIATGs~p~~p 116 (847)
T PRK14989 83 ITINR--QE--KVIHSSAGRTVFYDKLIMATGSYPWIP 116 (847)
T ss_pred EEEeC--CC--cEEEECCCcEEECCEEEECCCCCcCCC
Confidence 99865 22 246678888999999999999988754
No 111
>PRK06834 hypothetical protein; Provisional
Probab=98.53 E-value=1.4e-06 Score=87.76 Aligned_cols=100 Identities=27% Similarity=0.402 Sum_probs=77.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---Ccc--CC----------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---ARL--FT---------------------------------- 80 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---~~~--~d---------------------------------- 80 (356)
..|+|||+|+.|+-+|..|++.|.+|+++|+.+.+. ++. +.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 579999999999999999999999999999875321 000 00
Q ss_pred ----------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416 81 ----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 81 ----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 141 (356)
..+.+.+.+.+++.||+++.++++++++.++++ ..+++.+|+++.+|+||.|.|.++..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG--VDVELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEEEEecCCCCCc
Confidence 122344556667789999999999999874443 34667788899999999999988754
No 112
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.51 E-value=2.7e-07 Score=91.93 Aligned_cols=93 Identities=23% Similarity=0.263 Sum_probs=71.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++++|||+|+.|+++|..|++.|++|+++++.+.+. +. .++.++.....+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 35789999999999999999999999999999987652 11 15677777777889999999999975411
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCC-CCCc
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT 141 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~-~p~~ 141 (356)
.+.+.+. ...+|.||+|+|. +|..
T Consensus 209 -------~v~~~~~-~~~yd~viiAtGa~~p~~ 233 (449)
T TIGR01316 209 -------TATLEEL-FSQYDAVFIGTGAGLPKL 233 (449)
T ss_pred -------cCCHHHH-HhhCCEEEEeCCCCCCCc
Confidence 1223322 3469999999997 5643
No 113
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.51 E-value=6e-07 Score=87.15 Aligned_cols=99 Identities=26% Similarity=0.406 Sum_probs=77.7
Q ss_pred CCcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCC-cc---------CCHHHHHHHHHHHHhCC-CEEEeCCeee
Q 018416 39 GGNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMA-RL---------FTPKIASYYEEYYKSKG-VKFVKGTVLS 105 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~-~~---------~d~~~~~~~~~~l~~~G-V~v~~~~~v~ 105 (356)
.+++||||||+.|+++|..|.+.- .+||+|++.+..+- +. -+.++.-.+.+.+++.+ |+++.+ +|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEE-EEE
Confidence 579999999999999999999974 89999999876431 11 13455666778888666 998854 688
Q ss_pred EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+|+. +. ..|.+.++..+++|.+++++|.++++.
T Consensus 82 ~ID~--~~--k~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 82 DIDR--DA--KKVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEcc--cC--CEEEeCCCccccccEEEEecCCcCCcC
Confidence 8875 33 356777888899999999999998875
No 114
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.49 E-value=9.4e-07 Score=87.82 Aligned_cols=101 Identities=15% Similarity=0.205 Sum_probs=69.1
Q ss_pred CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccC------CccC----C-H-HHHHH-HHHHHHhCCCEEEeCCee
Q 018416 40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCM------ARLF----T-P-KIASY-YEEYYKSKGVKFVKGTVL 104 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l------~~~~----d-~-~~~~~-~~~~l~~~GV~v~~~~~v 104 (356)
++|||||||+.|+.+|..|+++ +.+|||+++.+.+. +..+ . . +.... .++..++.||+++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999987 67899999987532 1111 0 0 01111 123336679999999999
Q ss_pred eEEEEcCCCcEEEEEeCC-Cc--EEecCeEEEecCCCCCch
Q 018416 105 SSFDVDSNGKVVAVNLRD-GN--RLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 105 ~~i~~~~~g~v~~v~~~~-g~--~i~~D~vi~a~G~~p~~~ 142 (356)
++++. ++. ...+...+ ++ ++++|.+|+|+|.+|+..
T Consensus 82 ~~Id~-~~~-~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~ 120 (438)
T PRK13512 82 IAIND-ERQ-TVTVLNRKTNEQFEESYDKLILSPGASANSL 120 (438)
T ss_pred EEEEC-CCC-EEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence 99976 233 22333222 22 478999999999998643
No 115
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.48 E-value=1.9e-06 Score=84.20 Aligned_cols=101 Identities=23% Similarity=0.380 Sum_probs=77.2
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-------------C-Cc---------------------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------------M-AR--------------------------- 77 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-------------l-~~--------------------------- 77 (356)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+ + +.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 468999999999999999999999999999986421 0 00
Q ss_pred ---------cCC---------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416 78 ---------LFT---------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 133 (356)
Q Consensus 78 ---------~~d---------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 133 (356)
.++ ..+.+.+.+.+++.|++++.++++++++.+++ . ..+++++|+++.+|.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-~-v~v~~~~g~~~~a~~vV~ 163 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-R-VRLRLDDGRRLEAALAIA 163 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-e-EEEEECCCCEEEeCEEEE
Confidence 000 22334455567778999999999999986433 3 347778888999999999
Q ss_pred ecCCCCCc
Q 018416 134 GIGIRPNT 141 (356)
Q Consensus 134 a~G~~p~~ 141 (356)
|.|..++.
T Consensus 164 AdG~~S~v 171 (392)
T PRK08773 164 ADGAASTL 171 (392)
T ss_pred ecCCCchH
Confidence 99998754
No 116
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.48 E-value=7.6e-06 Score=72.17 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=104.2
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------C-------------------------------CH
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F-------------------------------TP 81 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------~-------------------------------d~ 81 (356)
...|+|||+|++|+-+|..|++.|.+|+++|++-.+.... | +.
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 3589999999999999999999999999999985442110 0 12
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----------CCcEEecCeEEEecCCCCCch-hh-hcc-
Q 018416 82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNTS-LF-EGQ- 147 (356)
Q Consensus 82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~~-l~-~~~- 147 (356)
+....+...--+.|.+++.++.++.+.-.++.++..+.++ |.-.++++.|+=+||.....- ++ +..
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 2333334444456899999999998865333256666543 334789999999999875542 22 111
Q ss_pred ---ccc-ccCcEEEe--c-----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 148 ---LTL-EKGGIKVT--G-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 148 ---l~~-~~g~I~vd--~-----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
... ..+....+ | +-+--.|++|++|-.+.-- +|.+++-|.-..=.-.|+.||+.++.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av---~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAV---HGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhh---cCCcccCchhhhhhhchHHHHHHHHH
Confidence 111 01111111 1 1122479999999887642 34444444444445677888876653
No 117
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.48 E-value=1.8e-06 Score=84.30 Aligned_cols=102 Identities=22% Similarity=0.256 Sum_probs=75.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------cC----
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------LF---- 79 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------~~---- 79 (356)
.+.+|+|||||+.|+-+|..|++.|++|+++|+.+.+... ++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 3578999999999999999999999999999998643110 00
Q ss_pred ---------C----------------HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416 80 ---------T----------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 133 (356)
Q Consensus 80 ---------d----------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 133 (356)
+ .++.+.+.+.+.+. +|+++.++++++++.+++ . ..+.+.+|+++.+|+||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-~-v~v~~~~g~~~~ad~vV~ 160 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-G-VTVFDQQGNRWTGDALIG 160 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-c-eEEEEcCCCEEecCEEEE
Confidence 0 01122334444444 499999999999986333 3 347778898999999999
Q ss_pred ecCCCCCc
Q 018416 134 GIGIRPNT 141 (356)
Q Consensus 134 a~G~~p~~ 141 (356)
|.|..+..
T Consensus 161 AdG~~S~~ 168 (396)
T PRK08163 161 CDGVKSVV 168 (396)
T ss_pred CCCcChHH
Confidence 99987654
No 118
>PRK07045 putative monooxygenase; Reviewed
Probab=98.46 E-value=2.7e-06 Score=83.02 Aligned_cols=102 Identities=23% Similarity=0.268 Sum_probs=77.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--------c---------------------c------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------R---------------------L------------ 78 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--------~---------------------~------------ 78 (356)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+-. + .
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999998764310 0 0
Q ss_pred -----------CC-------HHHHHHHHHHHH-hCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 79 -----------FT-------PKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 79 -----------~d-------~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
.+ .++.+.+.+.+. ..|++++++++++.++.++++.+..+++++|+++.+|+||-|.|.+.
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S 165 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS 165 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence 00 012233334443 35799999999999987666655578888999999999999999776
Q ss_pred Cc
Q 018416 140 NT 141 (356)
Q Consensus 140 ~~ 141 (356)
..
T Consensus 166 ~v 167 (388)
T PRK07045 166 MI 167 (388)
T ss_pred HH
Confidence 44
No 119
>PRK08244 hypothetical protein; Provisional
Probab=98.46 E-value=2.1e-06 Score=86.61 Aligned_cols=102 Identities=24% Similarity=0.335 Sum_probs=74.9
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------ 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------ 77 (356)
..|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999987432100
Q ss_pred cC--------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCc
Q 018416 78 LF--------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 78 ~~--------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~ 141 (356)
.+ -..+.+.+.+.+++.|++++.++++++++.++++....+...+| +++.+|+||.|.|.++..
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence 00 01344555666777899999999999998744442222333356 479999999999987754
No 120
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.46 E-value=1.4e-06 Score=83.05 Aligned_cols=56 Identities=29% Similarity=0.442 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
+.+.+.+.+++.|++++++++|+++.. +++.+..|.+.+|+ +.+|.||+|+|...+
T Consensus 149 l~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~ 204 (358)
T PF01266_consen 149 LIQALAAEAQRAGVEIRTGTEVTSIDV-DGGRVTGVRTSDGE-IRADRVVLAAGAWSP 204 (358)
T ss_dssp HHHHHHHHHHHTT-EEEESEEEEEEEE-ETTEEEEEEETTEE-EEECEEEE--GGGHH
T ss_pred hhhhhHHHHHHhhhhccccccccchhh-cccccccccccccc-cccceeEecccccce
Confidence 444456677888999999999999987 46666669999987 999999999997543
No 121
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.46 E-value=8.8e-07 Score=89.12 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=70.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++++|||+|++|+++|..|++.|.+|+++++.+++. +. .++.++.....+.+++.||++++++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 35799999999999999999999999999999988752 21 146677777778889999999999876311
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
+. .+.....+|.|++|+|..
T Consensus 220 --------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 --------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred --------cC-HHHHHhhCCEEEEccCCC
Confidence 00 111235799999999987
No 122
>PRK12831 putative oxidoreductase; Provisional
Probab=98.45 E-value=4.6e-07 Score=90.67 Aligned_cols=94 Identities=24% Similarity=0.320 Sum_probs=69.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Ccc-CCH-HHHHHHHHHHHhCCCEEEeCCeeeEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------ARL-FTP-KIASYYEEYYKSKGVKFVKGTVLSSFD 108 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~~-~d~-~~~~~~~~~l~~~GV~v~~~~~v~~i~ 108 (356)
.+++++|||+|+.|+.+|..|+++|++|+++++.+.+. +.+ ++. ++.....+.+++.||++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 46899999999999999999999999999999876542 110 223 3666667788999999999986521
Q ss_pred EcCCCcEEEEEeCCC-cEEecCeEEEecCC-CCCc
Q 018416 109 VDSNGKVVAVNLRDG-NRLPTDMVVVGIGI-RPNT 141 (356)
Q Consensus 109 ~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~-~p~~ 141 (356)
.+.+.+. +.+.+|.||+|+|. .|..
T Consensus 217 --------~v~~~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 --------TVTIDELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred --------cCCHHHHHhccCCCEEEEeCCCCCCCC
Confidence 1222332 34579999999997 4643
No 123
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.45 E-value=1.6e-06 Score=86.38 Aligned_cols=95 Identities=21% Similarity=0.385 Sum_probs=68.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----------------------------------CC-----
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------------------------FT----- 80 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----------------------------------~d----- 80 (356)
.++|||+|+.|+++|..++++|++|+|+++. .+.... ++
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 82 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDWKKLL 82 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCHHHHH
Confidence 6899999999999999999999999999974 221100 01
Q ss_pred -------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 81 -------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 81 -------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
.++.+.+++.+++.||+++.+ ++..+.. ..+ .+ ..+|+++.+|.+|+|+|.+|...
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~---~~v-~v-~~~g~~~~~d~lIiATGs~p~~p 145 (446)
T TIGR01424 83 QKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGP---NTV-EV-LQDGTTYTAKKILIAVGGRPQKP 145 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecC---CEE-EE-ecCCeEEEcCEEEEecCCcCCCC
Confidence 123344556678889999877 4555532 222 23 24677899999999999998643
No 124
>PLN02463 lycopene beta cyclase
Probab=98.44 E-value=2e-06 Score=85.51 Aligned_cols=98 Identities=20% Similarity=0.299 Sum_probs=73.8
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-CccC---------------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-ARLF--------------------------------------- 79 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-~~~~--------------------------------------- 79 (356)
-+|+|||||+.|+.+|..|++.|.+|.++++.+... +...
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 379999999999999999999999999999875321 1100
Q ss_pred ----CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 80 ----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 80 ----d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
..++.+.+.+.+.+.||+++ ..+|++++..+++ ..|.+++|+++++|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~--~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESK--SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe--EEEEECCCCEEEcCEEEECcCCCcC
Confidence 01223445555667899997 5689999864333 4677889999999999999998754
No 125
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.44 E-value=2.8e-06 Score=82.98 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=77.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC-ccCCcc---------------C-----------------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA-HCMARL---------------F----------------------- 79 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~-~~l~~~---------------~----------------------- 79 (356)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+ .+.+.. +
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 3579999999999999999999999999999972 221100 0
Q ss_pred ---------------------CHHHHHHHHHHHHhCC-CEEEeCCeeeEEEEcCCCcEEEEEeC-CCcEEecCeEEEecC
Q 018416 80 ---------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLR-DGNRLPTDMVVVGIG 136 (356)
Q Consensus 80 ---------------------d~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~v~~v~~~-~g~~i~~D~vi~a~G 136 (356)
-.++...+.+.+.+.+ |+++.+++|+.++.++ +.+. ++++ +|+++.||++|-|-|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgADG 159 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGADG 159 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECCC
Confidence 0134455666676665 9999999999998743 3443 7777 999999999999999
Q ss_pred CCCCc
Q 018416 137 IRPNT 141 (356)
Q Consensus 137 ~~p~~ 141 (356)
.....
T Consensus 160 ~~S~v 164 (387)
T COG0654 160 ANSAV 164 (387)
T ss_pred CchHH
Confidence 76543
No 126
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.44 E-value=6.3e-07 Score=89.74 Aligned_cols=93 Identities=22% Similarity=0.315 Sum_probs=72.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++|+|||+|++|+.+|..|+++|.+|+++++.+.+. +. .++.++.....+.+++.||++++++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46789999999999999999999999999999987652 21 156777777788899999999999876321
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 141 (356)
+.+.+ ....+|.||+|+|..+..
T Consensus 218 --------~~~~~-~~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 218 --------ISLDD-LLEDYDAVFLGVGTYRSM 240 (467)
T ss_pred --------cCHHH-HHhcCCEEEEEeCCCCCC
Confidence 11111 124699999999987753
No 127
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.43 E-value=2.6e-06 Score=87.13 Aligned_cols=98 Identities=19% Similarity=0.318 Sum_probs=74.8
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC------------Cc---cCCHHHHHHHHHHHHhCCCEEEeCCee
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------AR---LFTPKIASYYEEYYKSKGVKFVKGTVL 104 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l------------~~---~~d~~~~~~~~~~l~~~GV~v~~~~~v 104 (356)
-.|+|||||+.|+.+|..|++.|.+|+++++.+ +. +. ...+++.+.+++.+++.|++++ ++.+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V 82 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV 82 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence 479999999999999999999999999999864 21 11 0124677778888888999986 6678
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+++..+ +....+.+.++ ++.+|.+|+|+|.+|...
T Consensus 83 ~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~~ 117 (555)
T TIGR03143 83 LDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRKL 117 (555)
T ss_pred EEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCCC
Confidence 888752 33334555555 689999999999988653
No 128
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.42 E-value=2.2e-06 Score=83.38 Aligned_cols=98 Identities=15% Similarity=0.266 Sum_probs=71.1
Q ss_pred CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccC--CccCC---------HHHHH-HHHHHHHhCCCEEEeCCeee
Q 018416 40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM--ARLFT---------PKIAS-YYEEYYKSKGVKFVKGTVLS 105 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l--~~~~d---------~~~~~-~~~~~l~~~GV~v~~~~~v~ 105 (356)
+++||||+|+.|+.+|..|++++ .+||++.+.+... ...+. .++.. ...+.+++.||+++.+++|+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 82 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHHhCCCCHHHhhcCCHHHHHHhCCCEEECCCEEE
Confidence 58999999999999999998864 5799998876421 11121 12222 23455678899999999999
Q ss_pred EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+++. ++. .+.+ +++++++|.+|+|+|.+|...
T Consensus 83 ~id~-~~~---~v~~-~~~~~~yd~LVlATG~~~~~p 114 (377)
T PRK04965 83 DIDA-EAQ---VVKS-QGNQWQYDKLVLATGASAFVP 114 (377)
T ss_pred EEEC-CCC---EEEE-CCeEEeCCEEEECCCCCCCCC
Confidence 9975 222 2333 577899999999999988643
No 129
>PLN02661 Putative thiazole synthesis
Probab=98.42 E-value=1.6e-05 Score=76.01 Aligned_cols=167 Identities=15% Similarity=0.183 Sum_probs=102.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCCccCC----------cc----------------CCH---------
Q 018416 38 SGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMA----------RL----------------FTP--------- 81 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~~~l~----------~~----------------~d~--------- 81 (356)
..-.|+|||+|..|+-+|..|++. |.+|+++++...+.. .. ++.
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h 170 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH 170 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence 345899999999999999999986 899999999754311 00 111
Q ss_pred --HHHHHHH-HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC------C--C------cEEecCeEEEecCCCCCch--
Q 018416 82 --KIASYYE-EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR------D--G------NRLPTDMVVVGIGIRPNTS-- 142 (356)
Q Consensus 82 --~~~~~~~-~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~------~--g------~~i~~D~vi~a~G~~p~~~-- 142 (356)
+....+. +.+++.||+++.++.+.++.. +++++..+.+. + + ..+.++.||+|+|..+...
T Consensus 171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~-~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~ 249 (357)
T PLN02661 171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIV-KGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGAT 249 (357)
T ss_pred hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe-cCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhh
Confidence 1112233 344457999999999999876 45666666531 1 1 2689999999999665321
Q ss_pred hhhcc--ccc-c----cCcEEEe--c-----ccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCC
Q 018416 143 LFEGQ--LTL-E----KGGIKVT--G-----RLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEP 208 (356)
Q Consensus 143 l~~~~--l~~-~----~g~I~vd--~-----~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~ 208 (356)
..+.. +.. . .....++ | +-+--+|++|++|-.+.-- .|.+++-|.-..=...|+.||+.++..
T Consensus 250 ~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~---~g~~rmgp~fg~m~~sg~k~a~~~~~~ 326 (357)
T PLN02661 250 GVKRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEI---DGSPRMGPTFGAMMISGQKAAHLALKA 326 (357)
T ss_pred hhhcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhh---cCCCccCchhHhHHhhhHHHHHHHHHH
Confidence 11100 000 0 0111121 1 1112489999999887643 355554444444456788888877643
No 130
>PRK07588 hypothetical protein; Provisional
Probab=98.42 E-value=3.1e-06 Score=82.67 Aligned_cols=98 Identities=15% Similarity=0.137 Sum_probs=72.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------c----------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------R---------------------------------- 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------~---------------------------------- 77 (356)
+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-. .
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 699999999999999999999999999998754311 0
Q ss_pred -cCC-----------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 78 -LFT-----------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 78 -~~d-----------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
.++ .++.+.+.+.+ ..|+++++++++++++.++ +. ..+.+++|+++.+|+||-|.|.++
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~-~~-v~v~~~~g~~~~~d~vIgADG~~S 158 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHR-DG-VRVTFERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECC-Ce-EEEEECCCCEEEeCEEEECCCCCc
Confidence 000 00111222222 3479999999999998743 33 357888999999999999999766
Q ss_pred Cc
Q 018416 140 NT 141 (356)
Q Consensus 140 ~~ 141 (356)
..
T Consensus 159 ~v 160 (391)
T PRK07588 159 HV 160 (391)
T ss_pred cc
Confidence 55
No 131
>PRK05868 hypothetical protein; Validated
Probab=98.42 E-value=2.8e-06 Score=82.55 Aligned_cols=100 Identities=20% Similarity=0.196 Sum_probs=73.2
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------c-------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L------- 78 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------~------- 78 (356)
++|+|||||+.|+.+|..|++.|.+|+++|+.+.+... +
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 47999999999999999999999999999987543110 0
Q ss_pred --CCH---H------------HHHHHHHHHH---hCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 79 --FTP---K------------IASYYEEYYK---SKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 79 --~d~---~------------~~~~~~~~l~---~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
.+. . ....+.+.|. ..|+++++++++++++.++ +. ..+++++|+++++|+||-|-|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~-~~-v~v~~~dg~~~~adlvIgADG~~ 159 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDG-DS-VRVTFERAAAREFDLVIGADGLH 159 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecC-Ce-EEEEECCCCeEEeCEEEECCCCC
Confidence 000 0 0112223332 3589999999999997633 33 45788999999999999999977
Q ss_pred CCc
Q 018416 139 PNT 141 (356)
Q Consensus 139 p~~ 141 (356)
...
T Consensus 160 S~v 162 (372)
T PRK05868 160 SNV 162 (372)
T ss_pred chH
Confidence 654
No 132
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.41 E-value=3.2e-06 Score=82.98 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=74.8
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc----------cCCc--------------------c-----------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH----------CMAR--------------------L----------- 78 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~----------~l~~--------------------~----------- 78 (356)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+. ..++ .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999998751 0000 0
Q ss_pred ------------CC---------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeE
Q 018416 79 ------------FT---------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131 (356)
Q Consensus 79 ------------~d---------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~v 131 (356)
++ ..+.+.+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v~v~~~~g~~~~a~~v 160 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDD--WLLTLADGRQLRAPLV 160 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 00 012223445566679999999999999874444 3577888989999999
Q ss_pred EEecCCCCCc
Q 018416 132 VVGIGIRPNT 141 (356)
Q Consensus 132 i~a~G~~p~~ 141 (356)
|.|.|.....
T Consensus 161 VgAdG~~S~v 170 (405)
T PRK05714 161 VAADGANSAV 170 (405)
T ss_pred EEecCCCchh
Confidence 9999986644
No 133
>PRK06184 hypothetical protein; Provisional
Probab=98.40 E-value=3.7e-06 Score=84.99 Aligned_cols=99 Identities=16% Similarity=0.253 Sum_probs=74.5
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------c-------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L------- 78 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------~------- 78 (356)
-+|+|||+|+.|+-+|..|++.|++|+|+|+.+.+... .
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 47999999999999999999999999999987433100 0
Q ss_pred ----------------------CC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCcEEecCeEE
Q 018416 79 ----------------------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV 132 (356)
Q Consensus 79 ----------------------~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~vi 132 (356)
++ ..+.+.+.+.+++.|++++.++++++++.++++ + .+.+ .+++++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~vV 161 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG-V-TARVAGPAGEETVRARYLV 161 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEEE
Confidence 00 112345566677789999999999999875444 2 3444 556789999999
Q ss_pred EecCCCCC
Q 018416 133 VGIGIRPN 140 (356)
Q Consensus 133 ~a~G~~p~ 140 (356)
.|.|.+..
T Consensus 162 gADG~~S~ 169 (502)
T PRK06184 162 GADGGRSF 169 (502)
T ss_pred ECCCCchH
Confidence 99997754
No 134
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.40 E-value=2.4e-06 Score=82.68 Aligned_cols=95 Identities=24% Similarity=0.343 Sum_probs=70.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeC-CccCC-------------------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCMA------------------------------------------- 76 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~-~~~l~------------------------------------------- 76 (356)
.|+|||||..|+|+|..+++.|.+|.|+... +.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999999432 22110
Q ss_pred ---c------cCCH-HHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416 77 ---R------LFTP-KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 137 (356)
Q Consensus 77 ---~------~~d~-~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 137 (356)
. ..|. ...+.+++.|++ .+++++ ...|+++.. +++++..|.+.+|+.+.+|.||+++|.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0 1222 234556667766 688887 568999977 678999999999999999999999998
No 135
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.40 E-value=8.9e-07 Score=88.64 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=67.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHH--CCCcEEEEeeCCccCC--------cc-CCHHHHHHHHHHHHhCCCEEEeCCeeeE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVI--NKINVTMVFPEAHCMA--------RL-FTPKIASYYEEYYKSKGVKFVKGTVLSS 106 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~--~G~~Vtlv~~~~~~l~--------~~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~ 106 (356)
.+++|+|||+|+.|+.+|..|++ .|++|||+++.+.+.. .. ....+...+.+.++..+|+++.+..+..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46899999999999999999987 7999999999987642 10 1123444556667788999998765521
Q ss_pred EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
.+.+.+.+ ..+|.||+|+|..+.
T Consensus 105 ----------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 ----------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred ----------cccHHHHh-hhCCEEEEecCCCCC
Confidence 13333332 469999999998764
No 136
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.39 E-value=4e-06 Score=82.03 Aligned_cols=98 Identities=24% Similarity=0.418 Sum_probs=75.2
Q ss_pred cEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCCc-----------------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMAR----------------------------------------- 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~~----------------------------------------- 77 (356)
+|+|||||+.|+-+|..|++.| .+|+++|+.+...+.
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 6899999999999999999995 999999986431000
Q ss_pred ----------cC---------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEE
Q 018416 78 ----------LF---------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 132 (356)
Q Consensus 78 ----------~~---------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi 132 (356)
.+ ..++.+.+.+.+++.|++++.++++++++.+++ . ..+++++|+++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-~-v~v~~~~g~~~~ad~vI 160 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDE-G-VTVTLSDGSVLEARLLV 160 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-E-EEEEECCCCEEEeCEEE
Confidence 00 012345566667778999999999999976333 3 35778889999999999
Q ss_pred EecCCCCC
Q 018416 133 VGIGIRPN 140 (356)
Q Consensus 133 ~a~G~~p~ 140 (356)
.|.|..+.
T Consensus 161 ~AdG~~S~ 168 (403)
T PRK07333 161 AADGARSK 168 (403)
T ss_pred EcCCCChH
Confidence 99998765
No 137
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.39 E-value=8.2e-07 Score=94.05 Aligned_cols=94 Identities=22% Similarity=0.283 Sum_probs=71.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++|+|||+|+.|+.+|..|+++|++|+++++.+.+. |. .++.++.....+.+++.||++++++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~--- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGK--- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
Confidence 46799999999999999999999999999999865432 11 14566777777788999999999875411
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCC-CCCc
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGI-RPNT 141 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~-~p~~ 141 (356)
.+.+.+.....+|.||+|+|. .|..
T Consensus 507 -------~v~~~~l~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 507 -------TITIEELEEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred -------cCCHHHHhhcCCCEEEEeCCCCCCCC
Confidence 233344445679999999997 4653
No 138
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=1.1e-05 Score=76.10 Aligned_cols=99 Identities=16% Similarity=0.293 Sum_probs=75.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCcc-----------CC----ccCCHHHHHHHHHHHHhCCCEEEeCCe
Q 018416 40 GNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHC-----------MA----RLFTPKIASYYEEYYKSKGVKFVKGTV 103 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~-----------l~----~~~d~~~~~~~~~~l~~~GV~v~~~~~ 103 (356)
-.|+|||+|+.|+-+|-.+.+.+.+ +.+++....- .| ....+++.+.+.+..+..|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4799999999999999999999998 4555443111 11 124578888888888889999987 67
Q ss_pred eeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 104 LSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 104 v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+.+++..++ ...+++.+++ +.++.||+|+|..+...
T Consensus 83 v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 83 VEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGARKL 118 (305)
T ss_pred EEEEeecCc--eEEEEECCCe-EEEeEEEECcCCcccCC
Confidence 777765322 4678888877 99999999999776543
No 139
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.35 E-value=1.6e-06 Score=93.10 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=67.6
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEc
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 110 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 110 (356)
+++|+|||||+.|+.+|..|+++|++|||+++.+.+... .++.+......+.+.+.||++++++...
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 578999999999999999999999999999988754221 1345566666677888999999874311
Q ss_pred CCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 111 SNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 111 ~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
+.+.+.+...+|.|++|+|.++.
T Consensus 612 -------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 -------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred -------eEhhhhhcccccEEEECCCCCCC
Confidence 11223345669999999998754
No 140
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.35 E-value=6e-06 Score=80.19 Aligned_cols=98 Identities=14% Similarity=0.299 Sum_probs=73.3
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccCCc--------cCC-------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR--------LFT------------------------------- 80 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l~~--------~~d------------------------------- 80 (356)
.|+|||||+.|+-+|..|++.| .+|+++|+.+.+-+. .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 4899999999999999999999 999999987532110 000
Q ss_pred ------------------------HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416 81 ------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 135 (356)
Q Consensus 81 ------------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~ 135 (356)
.++.+.+.+.+.+ .|++++.++++++++.++++ ..+.+++|+++.+|.||.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vV~Ad 158 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDY--VRVTLDNGQQLRAKLLIAAD 158 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCe--EEEEECCCCEEEeeEEEEec
Confidence 1123334455555 49999999999999864443 35677888899999999999
Q ss_pred CCCCC
Q 018416 136 GIRPN 140 (356)
Q Consensus 136 G~~p~ 140 (356)
|....
T Consensus 159 G~~S~ 163 (382)
T TIGR01984 159 GANSK 163 (382)
T ss_pred CCChH
Confidence 97643
No 141
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.35 E-value=6.3e-06 Score=80.22 Aligned_cols=98 Identities=24% Similarity=0.360 Sum_probs=74.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------------------cc-C------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------RL-F------------------ 79 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------------------~~-~------------------ 79 (356)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.. .. +
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4799999999999999999999999999998865321 00 0
Q ss_pred ------------------------CHHHHHHHHHHHHhCC-CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEe
Q 018416 80 ------------------------TPKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 134 (356)
Q Consensus 80 ------------------------d~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a 134 (356)
...+.+.+.+.+++.| ++++ ++++++++..+++ ..+++.+|+++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~a 162 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDA--ATLTLADGQVLRADLVVGA 162 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCe--EEEEECCCCEEEeeEEEEe
Confidence 1123344556667777 9998 8999998763333 3577888888999999999
Q ss_pred cCCCCC
Q 018416 135 IGIRPN 140 (356)
Q Consensus 135 ~G~~p~ 140 (356)
.|....
T Consensus 163 dG~~S~ 168 (388)
T PRK07608 163 DGAHSW 168 (388)
T ss_pred CCCCch
Confidence 998754
No 142
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=98.33 E-value=2.6e-06 Score=85.67 Aligned_cols=82 Identities=26% Similarity=0.262 Sum_probs=66.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+++++|+|+|.+|+++|..|+++|.+|+++++.+. +....+.+.|++.||+++++..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~~~~~~------------ 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRLGPGPT------------ 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEECCCcc------------
Confidence 578999999999999999999999999999987642 233455677888999998876432
Q ss_pred EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
....+|+||+++|..|+..++.
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~~~~~~ 96 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPDAPLLA 96 (480)
T ss_pred ------ccCCCCEEEECCCcCCCCHHHH
Confidence 1245899999999999998754
No 143
>PRK06116 glutathione reductase; Validated
Probab=98.32 E-value=3.3e-06 Score=84.14 Aligned_cols=94 Identities=22% Similarity=0.423 Sum_probs=66.2
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------cCC-H-
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFT-P- 81 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------~~d-~- 81 (356)
-.++|||+|+.|+.+|..++++|.+|+|+++. .+... .++ .
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKFDWAK 83 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCcCHHH
Confidence 36999999999999999999999999999985 22000 000 0
Q ss_pred ----------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 82 ----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 82 ----------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
.+.+.+.+.+++.||+++.++ ++.+. .. .+++ +|+++.+|.+|+|+|.+|+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~-~~~v~---~~---~v~~-~g~~~~~d~lViATGs~p~~p 146 (450)
T PRK06116 84 LIANRDAYIDRLHGSYRNGLENNGVDLIEGF-ARFVD---AH---TVEV-NGERYTADHILIATGGRPSIP 146 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEcc---CC---EEEE-CCEEEEeCEEEEecCCCCCCC
Confidence 011223445677899999874 34442 22 3444 677899999999999998754
No 144
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.32 E-value=4.8e-06 Score=79.24 Aligned_cols=102 Identities=25% Similarity=0.379 Sum_probs=73.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------- 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------- 77 (356)
+|+|||||+.|+-+|..|++.|++|+|+|+.+.+.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 5899999999999999999999999999998433110
Q ss_pred ------------cC-------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CC--cEEecC
Q 018416 78 ------------LF-------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DG--NRLPTD 129 (356)
Q Consensus 78 ------------~~-------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g--~~i~~D 129 (356)
.+ -.++.+.+.+.+++.|++++.+++++.++.+.++....+... +| +++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~ad 162 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEAD 162 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEES
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEe
Confidence 00 034566677778888999999999999987555432233333 34 368999
Q ss_pred eEEEecCCCCCch
Q 018416 130 MVVVGIGIRPNTS 142 (356)
Q Consensus 130 ~vi~a~G~~p~~~ 142 (356)
+||-|-|.+....
T Consensus 163 lvVgADG~~S~vR 175 (356)
T PF01494_consen 163 LVVGADGAHSKVR 175 (356)
T ss_dssp EEEE-SGTT-HHH
T ss_pred eeecccCcccchh
Confidence 9999999876543
No 145
>PRK06753 hypothetical protein; Provisional
Probab=98.32 E-value=3.4e-06 Score=81.70 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=71.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----cCCHHH---------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----LFTPKI--------------------------------- 83 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----~~d~~~--------------------------------- 83 (356)
+|+|||||+.|+-+|..|++.|++|+|+|+.+.+... .+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6999999999999999999999999999988653110 000000
Q ss_pred ---------------HHHHHHHHHh--CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 84 ---------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 84 ---------------~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
...+.+.|.+ .+.++++++++++++.+ ++. ..+.+++|+++.+|+||-|.|.++.+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~-~~~-v~v~~~~g~~~~~~~vigadG~~S~vR 155 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENE-TDK-VTIHFADGESEAFDLCIGADGIHSKVR 155 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEec-CCc-EEEEECCCCEEecCEEEECCCcchHHH
Confidence 1112233322 24578999999999863 333 457788999999999999999766543
No 146
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.32 E-value=8e-06 Score=80.93 Aligned_cols=97 Identities=22% Similarity=0.383 Sum_probs=72.2
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------------c---------CC----------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------L---------FT---------------- 80 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------------~---------~d---------------- 80 (356)
-.|+|||||+.|+-+|..|++.|.+|+++|+.+.+..+ . +.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 47999999999999999999999999999987532100 0 00
Q ss_pred ----------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 81 ----------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 81 ----------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
.++-+.+.+..++.|++++.+++++++.. +++.+..+. .++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~-~~g~v~~v~-~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ-RDGKVVGVE-ADGDVIEAKTVILADGVN 163 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE-eCCEEEEEE-cCCcEEECCEEEEEeCCC
Confidence 01123345556678999999999999876 345544443 567789999999999974
No 147
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.32 E-value=1.6e-06 Score=87.02 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=69.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------c-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. . .++.++.....+.+++.||++++++.+.. .
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-~- 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK-D- 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC-c-
Confidence 357999999999999999999999999999999876531 1 14566667777788999999999986532 0
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
+.. +.....+|.|++|+|..+
T Consensus 220 --------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 --------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred --------CCH-HHHHhhCCEEEEecCCCC
Confidence 000 112347999999999873
No 148
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.32 E-value=1.5e-06 Score=90.45 Aligned_cols=92 Identities=20% Similarity=0.302 Sum_probs=71.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--------CccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------ARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--------~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++|+|||+|++|+.+|..|++.|++||++++.+.+. +..++.++.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 36899999999999999999999999999999998643 1126777777777889999999999987631
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
+ +.+.+ ....+|.|++++|..+.
T Consensus 386 --~-----~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --D-----ITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCCC
Confidence 1 11211 23468999999998654
No 149
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.31 E-value=1.6e-06 Score=94.20 Aligned_cols=93 Identities=23% Similarity=0.264 Sum_probs=70.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++|+|||||+.|+.+|..|+++|++|||+++.+.+. +. .++.++.....+.+++.||++++++.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~--- 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGK--- 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCC---
Confidence 35799999999999999999999999999999987652 11 14678888888889999999999965411
Q ss_pred cCCCcEEEEEeCCC-cEEecCeEEEecCCC-CC
Q 018416 110 DSNGKVVAVNLRDG-NRLPTDMVVVGIGIR-PN 140 (356)
Q Consensus 110 ~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~-p~ 140 (356)
.+.+.+- ....+|.||+|+|.. |.
T Consensus 506 -------~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 -------TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred -------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 1111111 124589999999984 54
No 150
>PRK09126 hypothetical protein; Provisional
Probab=98.31 E-value=8.8e-06 Score=79.38 Aligned_cols=101 Identities=25% Similarity=0.370 Sum_probs=73.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-----------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR----------------------------------- 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~----------------------------------- 77 (356)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+- ..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 479999999999999999999999999999875310 00
Q ss_pred --------cCCH---------------HHHHHHHHHH-HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416 78 --------LFTP---------------KIASYYEEYY-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 133 (356)
Q Consensus 78 --------~~d~---------------~~~~~~~~~l-~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 133 (356)
.++. .+.+.+.+.+ +..|++++.++++++++.+++ . ..+.+++|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-~-~~v~~~~g~~~~a~~vI~ 161 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-G-AQVTLANGRRLTARLLVA 161 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-e-EEEEEcCCCEEEeCEEEE
Confidence 0000 0112222233 346899999999999976333 3 357788899999999999
Q ss_pred ecCCCCCch
Q 018416 134 GIGIRPNTS 142 (356)
Q Consensus 134 a~G~~p~~~ 142 (356)
|.|..+...
T Consensus 162 AdG~~S~vr 170 (392)
T PRK09126 162 ADSRFSATR 170 (392)
T ss_pred eCCCCchhh
Confidence 999877653
No 151
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.31 E-value=5.5e-06 Score=82.31 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=65.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC----------CccC---------C-HHH-----------HHHHH
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------ARLF---------T-PKI-----------ASYYE 88 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----------~~~~---------d-~~~-----------~~~~~ 88 (356)
-.++|||||+.|+++|..++++|.+|+|+++.+.++ |... + +++ .....
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRGKNY 83 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999876321 1100 0 111 11122
Q ss_pred HHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-CcEEecCeEEEecCCCCCch
Q 018416 89 EYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 89 ~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi~a~G~~p~~~ 142 (356)
+.+.+.||+++.++. .+. ++.. ..+...+ ..++.+|.||+|+|.+|+..
T Consensus 84 ~~~~~~gV~~~~g~~--~~~--~~~~-v~v~~~~~~~~~~~d~vViATGs~~~~p 133 (438)
T PRK07251 84 AMLAGSGVDLYDAEA--HFV--SNKV-IEVQAGDEKIELTAETIVINTGAVSNVL 133 (438)
T ss_pred HHHHhCCCEEEEEEE--EEc--cCCE-EEEeeCCCcEEEEcCEEEEeCCCCCCCC
Confidence 456778999987653 221 2222 2233222 24799999999999998653
No 152
>PRK08013 oxidoreductase; Provisional
Probab=98.30 E-value=8.7e-06 Score=79.89 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=73.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--------c--cCCH----------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------R--LFTP---------------------------- 81 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--------~--~~d~---------------------------- 81 (356)
.+|+|||||+.|+-+|..|++.|.+|+++|+.+.+-. + .+.+
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 4799999999999999999999999999998754110 0 0000
Q ss_pred ----------------------------HHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEE
Q 018416 82 ----------------------------KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 132 (356)
Q Consensus 82 ----------------------------~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi 132 (356)
++.+.+.+.+++. ||+++.++++++++.++++ ..+++.+|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~v~~~~g~~i~a~lvV 161 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENE--AFLTLKDGSMLTARLVV 161 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--EEEEEcCCCEEEeeEEE
Confidence 1122233334443 7999999999999764443 45778899999999999
Q ss_pred EecCCCCCc
Q 018416 133 VGIGIRPNT 141 (356)
Q Consensus 133 ~a~G~~p~~ 141 (356)
-|-|.....
T Consensus 162 gADG~~S~v 170 (400)
T PRK08013 162 GADGANSWL 170 (400)
T ss_pred EeCCCCcHH
Confidence 999987654
No 153
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.30 E-value=7.4e-06 Score=79.91 Aligned_cols=101 Identities=16% Similarity=0.251 Sum_probs=72.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc--cC---C---c--cCCH-------------H--------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--CM---A---R--LFTP-------------K-------------- 82 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~--~l---~---~--~~d~-------------~-------------- 82 (356)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+. .. + + .+.+ .
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 4799999999999999999999999999997641 00 0 0 0000 0
Q ss_pred ----------------------------HHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEE
Q 018416 83 ----------------------------IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVV 133 (356)
Q Consensus 83 ----------------------------~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~ 133 (356)
+...+.+.+++ .|++++.++++++++.++++ ..+++++|+++.+|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~--~~v~~~~g~~~~~~lvIg 161 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEG--NRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCe--EEEEECCCCEEEeeEEEE
Confidence 00111222223 37999999999999874444 457888999999999999
Q ss_pred ecCCCCCch
Q 018416 134 GIGIRPNTS 142 (356)
Q Consensus 134 a~G~~p~~~ 142 (356)
|.|..+...
T Consensus 162 ADG~~S~vR 170 (384)
T PRK08849 162 ADGANSQVR 170 (384)
T ss_pred ecCCCchhH
Confidence 999877654
No 154
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.30 E-value=8.9e-06 Score=79.94 Aligned_cols=101 Identities=18% Similarity=0.337 Sum_probs=71.4
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC----Cc--cC---------------------------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----AR--LF--------------------------------- 79 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----~~--~~--------------------------------- 79 (356)
..+|+|||||+.|+-+|..|++.|.+|+|+|+.+.+- ++ .+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 4589999999999999999999999999999875321 00 00
Q ss_pred -------C---------------HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCC-C--cEEecCeEEE
Q 018416 80 -------T---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRD-G--NRLPTDMVVV 133 (356)
Q Consensus 80 -------d---------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g--~~i~~D~vi~ 133 (356)
+ ..+.+.+.+.+.+. ||+++.++++++++.++++ ..+++.+ + .++.+|+||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~--~~v~~~~~~~~~~i~adlvIg 175 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA--ATVTLEIEGKQQTLQSKLVVA 175 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe--eEEEEccCCcceEEeeeEEEE
Confidence 0 11222333334443 7999999999999764443 3455543 2 4699999999
Q ss_pred ecCCCCCc
Q 018416 134 GIGIRPNT 141 (356)
Q Consensus 134 a~G~~p~~ 141 (356)
|.|.....
T Consensus 176 ADG~~S~v 183 (415)
T PRK07364 176 ADGARSPI 183 (415)
T ss_pred eCCCCchh
Confidence 99987654
No 155
>PRK07190 hypothetical protein; Provisional
Probab=98.29 E-value=9.2e-06 Score=81.82 Aligned_cols=99 Identities=19% Similarity=0.370 Sum_probs=74.9
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC----------------------------------------cc-
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------------------------RL- 78 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~----------------------------------------~~- 78 (356)
-.|+|||+|+.|+-+|..|++.|.+|+++|+.+.+.. ..
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4799999999999999999999999999998753210 00
Q ss_pred ---------CC------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416 79 ---------FT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 137 (356)
Q Consensus 79 ---------~d------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 137 (356)
++ ..+-+.+.+.+++.|++++.++++++++.++++ ..+.+.+|+++.+++||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~--v~v~~~~g~~v~a~~vVgADG~ 163 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG--CLTTLSNGERIQSRYVIGADGS 163 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe--eEEEECCCcEEEeCEEEECCCC
Confidence 00 112234455667789999999999999875444 2355677889999999999998
Q ss_pred CCC
Q 018416 138 RPN 140 (356)
Q Consensus 138 ~p~ 140 (356)
+..
T Consensus 164 ~S~ 166 (487)
T PRK07190 164 RSF 166 (487)
T ss_pred CHH
Confidence 653
No 156
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.29 E-value=1.1e-05 Score=78.34 Aligned_cols=98 Identities=18% Similarity=0.316 Sum_probs=73.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------c--cCC-------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R--LFT------------------------------- 80 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~--~~d------------------------------- 80 (356)
.|+|||+|+.|+-+|..|++.|.+|+|+|+.+.+-. + .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 489999999999999999999999999999864200 0 000
Q ss_pred -------------------------HHHHHHHHHHHHhCC-CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEe
Q 018416 81 -------------------------PKIASYYEEYYKSKG-VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVG 134 (356)
Q Consensus 81 -------------------------~~~~~~~~~~l~~~G-V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a 134 (356)
.++.+.+.+.+.+.| ++++.++++++++.+ ++. ..+++++|+++.+|.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~~~vi~a 158 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRH-SDH-VELTLDDGQQLRARLLVGA 158 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCe-eEEEECCCCEEEeeEEEEe
Confidence 012233444555666 999999999999763 333 3577889999999999999
Q ss_pred cCCCCC
Q 018416 135 IGIRPN 140 (356)
Q Consensus 135 ~G~~p~ 140 (356)
.|....
T Consensus 159 dG~~S~ 164 (385)
T TIGR01988 159 DGANSK 164 (385)
T ss_pred CCCCCH
Confidence 997654
No 157
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.28 E-value=1.2e-05 Score=80.51 Aligned_cols=100 Identities=24% Similarity=0.348 Sum_probs=68.4
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc--------cCCc---------------------c--------CCH-
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------CMAR---------------------L--------FTP- 81 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~--------~l~~---------------------~--------~d~- 81 (356)
++++|||+|+.|+++|..++++|.+|+++++.+- +.|. . +|.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARVDLP 81 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccccCHH
Confidence 5799999999999999999999999999998640 0000 0 010
Q ss_pred H-----------HHHHHHHHHHhCCCEEEeCCeeeEEEE-cCCCcEEEEEeCCCc--EEecCeEEEecCCCCCc
Q 018416 82 K-----------IASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 82 ~-----------~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~ 141 (356)
. +.+.+.+.|++.||+++.+.. +.++. .++.. ..+.+.+|+ ++.+|.+|+|+|.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~~~-v~V~~~~g~~~~~~~d~lViATGs~p~~ 153 (466)
T PRK07845 82 AVNARVKALAAAQSADIRARLEREGVRVIAGRG-RLIDPGLGPHR-VKVTTADGGEETLDADVVLIATGASPRI 153 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEE-EEeecccCCCE-EEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence 0 122344567778999998753 22221 02222 346666775 79999999999999863
No 158
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.27 E-value=8.6e-06 Score=80.99 Aligned_cols=98 Identities=15% Similarity=0.242 Sum_probs=65.2
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-Ccc-----C-------------CH--------HHHHHH----H
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-ARL-----F-------------TP--------KIASYY----E 88 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-~~~-----~-------------d~--------~~~~~~----~ 88 (356)
-.++|||||+.|+.+|..|+++|.+|+++++.+..+ ... + +- ++.+.+ .
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNF 83 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHHhHH
Confidence 379999999999999999999999999999875321 100 0 10 001111 1
Q ss_pred HHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecCCCCCch
Q 018416 89 EYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 89 ~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p~~~ 142 (356)
+.+.+ .||+++.+ ++..+. .+. ..+.+.++. ++.+|.+|+|+|.+|...
T Consensus 84 ~~~~~~~gv~~~~g-~~~~i~---~~~-~~v~~~~g~~~~~~d~lviATGs~p~~p 134 (441)
T PRK08010 84 HNLADMPNIDVIDG-QAEFIN---NHS-LRVHRPEGNLEIHGEKIFINTGAQTVVP 134 (441)
T ss_pred HHHhhcCCcEEEEE-EEEEec---CCE-EEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence 22333 48999876 344442 232 345566775 699999999999988653
No 159
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.27 E-value=1.7e-05 Score=80.43 Aligned_cols=136 Identities=26% Similarity=0.314 Sum_probs=85.9
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------------------------------C----------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------F---------- 79 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------------------------------~---------- 79 (356)
|+|+|||+|+.|+-.|..|.+.|.+|+++|+.+.+..-+ +
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f~ 81 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDFP 81 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSSE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCCC
Confidence 799999999999999999999999999999986542110 0
Q ss_pred -CHHHHHHHHHHHHhCCC--EEEeCCeeeEEEEcCC----CcEEEEEeC-CCc--EEecCeEEEecCC--CCCchhh-hc
Q 018416 80 -TPKIASYYEEYYKSKGV--KFVKGTVLSSFDVDSN----GKVVAVNLR-DGN--RLPTDMVVVGIGI--RPNTSLF-EG 146 (356)
Q Consensus 80 -d~~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~----g~v~~v~~~-~g~--~i~~D~vi~a~G~--~p~~~l~-~~ 146 (356)
..++.++++...+..++ .+.++++|++++..++ ++- .|++. +|+ +-.+|.|++|+|. .|+.... -.
T Consensus 82 ~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W-~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~~ 160 (531)
T PF00743_consen 82 SHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKW-EVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSFP 160 (531)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEE-EEEETTTTEEEEEEECEEEEEE-SSSCESB-----C
T ss_pred CHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceE-EEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhhh
Confidence 14678888888888777 5889999999987544 222 34443 343 3568999999995 4554420 11
Q ss_pred ccccccCcEEEeccccc----CCCCEEEEccccc
Q 018416 147 QLTLEKGGIKVTGRLQS----SNSSVYAVGDVAA 176 (356)
Q Consensus 147 ~l~~~~g~I~vd~~l~t----s~~~VyAiGD~~~ 176 (356)
+++.-+|.|.=-..++. ...+|-.+|-..+
T Consensus 161 G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~S 194 (531)
T PF00743_consen 161 GLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNS 194 (531)
T ss_dssp TGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHH
T ss_pred hhhcCCeeEEccccCcChhhcCCCEEEEEeCCHh
Confidence 22222344443333333 3567888887654
No 160
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.27 E-value=1.1e-05 Score=80.75 Aligned_cols=98 Identities=21% Similarity=0.248 Sum_probs=68.1
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----CC------------------------------H-H-
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FT------------------------------P-K- 82 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----~d------------------------------~-~- 82 (356)
-.++|||+|+.|+.+|..|+++|.+|+++++.+.+.... .+ . +
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRITFADL 85 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccCHHHH
Confidence 479999999999999999999999999999865432110 00 0 0
Q ss_pred ----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCch
Q 018416 83 ----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 83 ----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 142 (356)
..+.+.+.+++.||+++.+. +..+ +.+. ..+...+|+ ++.+|.+|+|+|.+|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~---~~~~-~~v~~~~g~~~~~~~d~lviATGs~p~~p 152 (461)
T PRK05249 86 LARADHVINKQVEVRRGQYERNRVDLIQGR-ARFV---DPHT-VEVECPDGEVETLTADKIVIATGSRPYRP 152 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEEe---cCCE-EEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence 11223445677899999874 3333 2232 345556664 799999999999988643
No 161
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.24 E-value=1.3e-05 Score=81.90 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=73.7
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 77 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------------- 77 (356)
..+|+|||+|+.|+-+|..|++.|.+|+++|+.+.+...
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 468999999999999999999999999999988532100
Q ss_pred ---cCC-----------------HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeC--CC--cEEecCeEE
Q 018416 78 ---LFT-----------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLR--DG--NRLPTDMVV 132 (356)
Q Consensus 78 ---~~d-----------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~--~g--~~i~~D~vi 132 (356)
.++ +++.+.+.+.+.+ .|++++.++++++++.++++ ..++++ +| +++.+|+||
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v~v~~~~~~G~~~~i~ad~vV 167 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--VTVTLTDADGQRETVRARYVV 167 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--EEEEEEcCCCCEEEEEEEEEE
Confidence 000 1122334444544 49999999999999875555 234554 56 479999999
Q ss_pred EecCCCCCc
Q 018416 133 VGIGIRPNT 141 (356)
Q Consensus 133 ~a~G~~p~~ 141 (356)
-|.|.+...
T Consensus 168 gADG~~S~v 176 (538)
T PRK06183 168 GCDGANSFV 176 (538)
T ss_pred ecCCCchhH
Confidence 999987655
No 162
>PLN02697 lycopene epsilon cyclase
Probab=98.24 E-value=1.3e-05 Score=81.17 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=71.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----------------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------------------------- 78 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~----------------------------------------- 78 (356)
-.|+|||+|+.|+.+|..|++.|.+|.++++...+....
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 379999999999999999999999999998753321110
Q ss_pred CC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 79 FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 79 ~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
++ ..+.+.+.+.+.+.|+++ .+++|+++..++++ +..+.+.+|.++.++.||.|.|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~-~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDG-LRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCc-EEEEEEcCCcEEECCEEEECCCcCh
Confidence 00 112244555566789998 57789998763333 3334567888999999999999876
No 163
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.24 E-value=1.4e-05 Score=77.86 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=71.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------c--------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------L-------------- 78 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------~-------------- 78 (356)
.|+|||+|+.|+-+|..|++.|.+|+|+++.+.+... .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 4899999999999999999999999999987532100 0
Q ss_pred -C-CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 79 -F-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 79 -~-d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
+ ..++.+.+.+.+.+.|++++ ..+++.++.+ ++....+.+.+|+++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~-~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEAD-GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEec-CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0 01233445556677799886 5578888753 2333457778888999999999999876
No 164
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.24 E-value=4.5e-06 Score=81.97 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=65.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCC-HH-----------------HHHHHHHHHHhCCCEEEeCC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFT-PK-----------------IASYYEEYYKSKGVKFVKGT 102 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d-~~-----------------~~~~~~~~l~~~GV~v~~~~ 102 (356)
+|+|||||.+|+|+|..|+++|.+|+|+++++.++.+... .. ....+.+.++..|..+...+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~lg~l~~~~a 81 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQLSSLIITAA 81 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhhcCeeeeehh
Confidence 6999999999999999999999999999988775443111 01 11234566777676555544
Q ss_pred eeeEEEEcCCCcEE------------------EEEeCCC--cEE-ecCeEEEecCCCCCchhhhc
Q 018416 103 VLSSFDVDSNGKVV------------------AVNLRDG--NRL-PTDMVVVGIGIRPNTSLFEG 146 (356)
Q Consensus 103 ~v~~i~~~~~g~v~------------------~v~~~~g--~~i-~~D~vi~a~G~~p~~~l~~~ 146 (356)
....+.. .+.+. .+.+.++ +.+ ..|.||+|+|..|+..+.+.
T Consensus 82 d~~~Ipa--gg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~~d~VViATG~~~s~~La~~ 144 (433)
T TIGR00137 82 DRHAVPA--GGALAVDRGIFSRSLTEQVASHPNVTLIREEVTEIPEEGITVIATGPLTSPALSED 144 (433)
T ss_pred hhhCCCC--CceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEEEccCCeEEEeCCCCccHHHHHH
Confidence 4444321 11110 0011112 123 46899999999998887654
No 165
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=1.1e-05 Score=81.03 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=68.4
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------cCC-HH
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT-PK 82 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------~~d-~~ 82 (356)
.-+++|||||+.|+.+|..++++|++|+++++.. +... .++ +.
T Consensus 4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 82 (472)
T PRK05976 4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPALDFAK 82 (472)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCccCHHH
Confidence 3579999999999999999999999999999852 1000 011 00
Q ss_pred -----------HHHHHHHHHHhCCCEEEeCCeeeEEEEc---CCCcEEEEEeCCC--cEEecCeEEEecCCCCCc
Q 018416 83 -----------IASYYEEYYKSKGVKFVKGTVLSSFDVD---SNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 83 -----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~---~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~ 141 (356)
+.+...+.+++.||+++.+. ++.+... ++.....+.+.+| +++.+|.+|+|+|.+|+.
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~ 156 (472)
T PRK05976 83 VQERKDGIVDRLTKGVAALLKKGKIDVFHGI-GRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVE 156 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCC
Confidence 11222345677899999874 3444321 0111245666677 579999999999999863
No 166
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.23 E-value=1.3e-05 Score=78.24 Aligned_cols=101 Identities=18% Similarity=0.299 Sum_probs=74.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC----------------------------Ccc------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------ARL------------ 78 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----------------------------~~~------------ 78 (356)
.-+|+|||||+.|+-+|..|++.|.+|+++|+.+..- +..
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 3579999999999999999999999999999874100 000
Q ss_pred ----------CC---------------HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEE
Q 018416 79 ----------FT---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 132 (356)
Q Consensus 79 ----------~d---------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi 132 (356)
++ ..+.+.+.+.+++. |++++.++++++++.++++ ..+.+++|+++.+|+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI 162 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDG--WELTLADGEEIQAKLVI 162 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe--EEEEECCCCEEEeCEEE
Confidence 00 11223344445555 9999999999999764333 45777888899999999
Q ss_pred EecCCCCCc
Q 018416 133 VGIGIRPNT 141 (356)
Q Consensus 133 ~a~G~~p~~ 141 (356)
.|.|..+..
T Consensus 163 ~AdG~~S~v 171 (391)
T PRK08020 163 GADGANSQV 171 (391)
T ss_pred EeCCCCchh
Confidence 999987653
No 167
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.23 E-value=1.2e-05 Score=80.64 Aligned_cols=96 Identities=20% Similarity=0.178 Sum_probs=65.5
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----C------------------------------C-HHH
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----F------------------------------T-PKI 83 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----~------------------------------d-~~~ 83 (356)
-.++|||+|+.|+.+|..++++|.+|+++++.+.+.... + | +.+
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDIDKM 84 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcCHHHH
Confidence 579999999999999999999999999999865432100 0 0 011
Q ss_pred H-----------HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCC
Q 018416 84 A-----------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 84 ~-----------~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~ 140 (356)
. ..+...+++.||+++.+... -+ +... ..+...+| +++.+|.+|+|||.+|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~-~~---~~~~-v~v~~~~g~~~~~~~d~lViATGs~p~ 149 (471)
T PRK06467 85 RARKEKVVKQLTGGLAGMAKGRKVTVVNGLGK-FT---GGNT-LEVTGEDGKTTVIEFDNAIIAAGSRPI 149 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec---cCCE-EEEecCCCceEEEEcCEEEEeCCCCCC
Confidence 1 11223456779999977532 22 2222 34555566 47999999999999885
No 168
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.23 E-value=1.5e-05 Score=81.41 Aligned_cols=103 Identities=18% Similarity=0.290 Sum_probs=73.4
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------------------c------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------L------ 78 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------~------ 78 (356)
..+|+|||+|+.|+-+|..|++.|++|+++|+.+.+... .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 357999999999999999999999999999988532100 0
Q ss_pred -------------------C-CHHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecC
Q 018416 79 -------------------F-TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIG 136 (356)
Q Consensus 79 -------------------~-d~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G 136 (356)
+ ..++.+.+.+.+++. ++++++++++++++.++++....++..++. ++.+|+||.|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG 182 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDG 182 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCC
Confidence 0 011223344445554 799999999999987544432233334554 699999999999
Q ss_pred CCCCc
Q 018416 137 IRPNT 141 (356)
Q Consensus 137 ~~p~~ 141 (356)
.++..
T Consensus 183 ~~S~v 187 (547)
T PRK08132 183 ARSPL 187 (547)
T ss_pred CCcHH
Confidence 87754
No 169
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.21 E-value=9.4e-05 Score=70.91 Aligned_cols=163 Identities=15% Similarity=0.260 Sum_probs=102.7
Q ss_pred CcEEEECCchHHHHHHHHHHHC----CCcEEEEeeCCccCCc--------cCCHHHH-----------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCMAR--------LFTPKIA----------------------- 84 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~----G~~Vtlv~~~~~~l~~--------~~d~~~~----------------------- 84 (356)
++|.|||+|-+|.|+-..|... ..++.++.|++.++|. .|.|+..
T Consensus 188 ~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~Yk 267 (436)
T COG3486 188 RSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYK 267 (436)
T ss_pred ceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCcccc
Confidence 4499999999999999888754 4468899999766542 1222211
Q ss_pred -------HHHHHHH-H------hCCCEEEeCCeeeEEEEcCCCcEEEEEe-----CCCcEEecCeEEEecCCCCCch-hh
Q 018416 85 -------SYYEEYY-K------SKGVKFVKGTVLSSFDVDSNGKVVAVNL-----RDGNRLPTDMVVVGIGIRPNTS-LF 144 (356)
Q Consensus 85 -------~~~~~~l-~------~~GV~v~~~~~v~~i~~~~~g~v~~v~~-----~~g~~i~~D~vi~a~G~~p~~~-l~ 144 (356)
..+-+.| + +..|.++.++.+++++...+|. ..+.+ .+.+++++|.||+|||.+.... ++
T Consensus 268 gI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 268 GISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce-EEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 1111111 1 2468899999999999866664 23333 2335789999999999885444 44
Q ss_pred hc---cccc-ccCcEEEecccccC--C---CCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcCCC
Q 018416 145 EG---QLTL-EKGGIKVTGRLQSS--N---SSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIMEPD 209 (356)
Q Consensus 145 ~~---~l~~-~~g~I~vd~~l~ts--~---~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 209 (356)
+. .+.. ++|...|+..++.. . -.||+.|=+...... |.+ -+.-.|.+.+ ...+.++|..
T Consensus 347 ~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGi--g~p---dLsl~a~Raa-~I~~~L~g~~ 414 (436)
T COG3486 347 EGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGI--GAP---DLSLGAWRAA-VILNSLLGRE 414 (436)
T ss_pred hhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccccccc--CCc---cchHHHHHHH-HHHHHHhCcC
Confidence 32 2444 67889998766542 1 269999877654432 222 1222344444 4566777765
No 170
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.21 E-value=3.8e-06 Score=87.55 Aligned_cols=92 Identities=21% Similarity=0.284 Sum_probs=69.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++|+|||+|+.|+.+|..|++.|++||++++.+.+. +. .++.++.+...+.+++.||++++++.+. .
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~-~-- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFG-R-- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCccc-C--
Confidence 45799999999999999999999999999999987652 21 1456677777788889999999887541 1
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
.+.+.+. ...+|.|++|+|..+.
T Consensus 269 -------dv~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 -------DITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred -------ccCHHHH-HhhcCEEEEEcCCCCC
Confidence 0112121 2359999999998754
No 171
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.21 E-value=3.5e-06 Score=87.88 Aligned_cols=91 Identities=22% Similarity=0.332 Sum_probs=69.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+. +. .++.++.....+.+++.||++++++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46899999999999999999999999999999987642 11 14667777677788899999999986521
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
+ +.+.+ ....+|.|++++|..+
T Consensus 403 --~-----i~~~~-~~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 --D-----ISLES-LLEDYDAVFVGVGTYR 424 (654)
T ss_pred --c-----CCHHH-HHhcCCEEEEeCCCCC
Confidence 0 11111 1236999999999754
No 172
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.20 E-value=2e-05 Score=77.25 Aligned_cols=100 Identities=15% Similarity=0.268 Sum_probs=70.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------ 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------ 77 (356)
++|+|||||+.|+-+|..|++.|.+|+++|+.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 78999999999999999999999999999987542100
Q ss_pred -cCC--------------------HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCcEEecCeEE
Q 018416 78 -LFT--------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGNRLPTDMVV 132 (356)
Q Consensus 78 -~~d--------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~~i~~D~vi 132 (356)
.+. .++.+.+.+.+.+ .++++++++++++++.++++ ..+++ .+++++.+|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~--v~v~~~~~~~~~~~~adlvI 160 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNS--ITATIIRTNSVETVSAAYLI 160 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCc--eEEEEEeCCCCcEEecCEEE
Confidence 000 1122333344433 47999999999999764333 23444 334679999999
Q ss_pred EecCCCCCc
Q 018416 133 VGIGIRPNT 141 (356)
Q Consensus 133 ~a~G~~p~~ 141 (356)
-|-|.....
T Consensus 161 gADG~~S~v 169 (400)
T PRK06475 161 ACDGVWSML 169 (400)
T ss_pred ECCCccHhH
Confidence 999976543
No 173
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.19 E-value=1.8e-05 Score=76.95 Aligned_cols=99 Identities=13% Similarity=0.240 Sum_probs=71.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC----ccCC--c--cC---------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA----HCMA--R--LF--------------------------------- 79 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~----~~l~--~--~~--------------------------------- 79 (356)
+|+|||||+.|+-+|..|++.|.+|+|+|+.+ .+.+ + .+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 69999999999999999999999999999752 1000 0 00
Q ss_pred --------------------CHHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 80 --------------------TPKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 80 --------------------d~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
-.++.+.+.+.+.+. +++++.+++++++..++++ ..+.++++ ++.+|+||-|-|..
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~--v~v~~~~~-~~~adlvIgADG~~ 159 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDY--SIIKFDDK-QIKCNLLIICDGAN 159 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCe--EEEEEcCC-EEeeCEEEEeCCCC
Confidence 012333444555555 4899999999998764443 34777666 89999999999987
Q ss_pred CCch
Q 018416 139 PNTS 142 (356)
Q Consensus 139 p~~~ 142 (356)
....
T Consensus 160 S~vR 163 (374)
T PRK06617 160 SKVR 163 (374)
T ss_pred chhH
Confidence 6553
No 174
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.19 E-value=3.9e-06 Score=80.60 Aligned_cols=117 Identities=22% Similarity=0.324 Sum_probs=70.0
Q ss_pred CCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCccCCc--------cCCHHH--
Q 018416 16 ENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMAR--------LFTPKI-- 83 (356)
Q Consensus 16 ~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~l~~--------~~d~~~-- 83 (356)
++|++..++..... . ...+++|+|||||-+|.|++..|.+.+. +|+++.|++.+.+. .++|+.
T Consensus 172 ~~v~Hss~~~~~~~--~---~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~ 246 (341)
T PF13434_consen 172 PRVFHSSEYLSRID--Q---SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVD 246 (341)
T ss_dssp TTEEEGGGHHHHHT----------EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHH
T ss_pred CCEEEehHhhhccc--c---ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhh
Confidence 67887655433321 1 1267999999999999999999999875 89999998765331 233332
Q ss_pred -----------------------------HHHHHHH-----H-HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--
Q 018416 84 -----------------------------ASYYEEY-----Y-KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G-- 123 (356)
Q Consensus 84 -----------------------------~~~~~~~-----l-~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g-- 123 (356)
.+.+.+. + .+..++++.++.|++++.+++|.+ .+.+.+ +
T Consensus 247 ~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~-~l~~~~~~~~~~ 325 (341)
T PF13434_consen 247 YFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGV-RLTLRHRQTGEE 325 (341)
T ss_dssp HHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSE-EEEEEETTT--E
T ss_pred hhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEE-EEEEEECCCCCe
Confidence 2222111 1 223578999999999988665443 344443 2
Q ss_pred cEEecCeEEEecCCC
Q 018416 124 NRLPTDMVVVGIGIR 138 (356)
Q Consensus 124 ~~i~~D~vi~a~G~~ 138 (356)
.++++|.||+|||++
T Consensus 326 ~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 326 ETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEESEEEE---EE
T ss_pred EEEecCEEEEcCCcc
Confidence 468999999999974
No 175
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.19 E-value=1.6e-05 Score=78.06 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC-CccC------Cc--cCCH----------------------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE-AHCM------AR--LFTP---------------------------- 81 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~-~~~l------~~--~~d~---------------------------- 81 (356)
..+|+|||||+.|+-+|..|++.|.+|+++|+. +... .+ .+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 358999999999999999999999999999985 2100 00 0000
Q ss_pred ----------------------------HHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEE
Q 018416 82 ----------------------------KIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVV 132 (356)
Q Consensus 82 ----------------------------~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi 132 (356)
.+...+.+.+.+ .||+++.++++++++.++++ ..+.+++|+++.+|+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~lvI 161 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESE--AWLTLDNGQALTAKLVV 161 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCe--EEEEECCCCEEEeCEEE
Confidence 011223333334 47999999999999764333 45778899999999999
Q ss_pred EecCCCCCc
Q 018416 133 VGIGIRPNT 141 (356)
Q Consensus 133 ~a~G~~p~~ 141 (356)
.|.|.....
T Consensus 162 gADG~~S~v 170 (405)
T PRK08850 162 GADGANSWL 170 (405)
T ss_pred EeCCCCChh
Confidence 999976543
No 176
>PRK10015 oxidoreductase; Provisional
Probab=98.18 E-value=2.2e-05 Score=77.81 Aligned_cols=98 Identities=17% Similarity=0.325 Sum_probs=72.1
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC------------------Ccc-----------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------ARL----------------------- 78 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l------------------~~~----------------------- 78 (356)
-.|+|||||+.|+-+|..|++.|.+|+++|+.+.+. +.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 479999999999999999999999999999875321 100
Q ss_pred --CC------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 79 --FT------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 79 --~d------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
++ ..+-+.+.+..++.|++++.+++|+.+.. +++.+..+. .++.++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~-~~~~v~~v~-~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR-EGNKVTGVQ-AGDDILEANVVILADGVN 163 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE-eCCEEEEEE-eCCeEEECCEEEEccCcc
Confidence 00 01122355666778999999999999875 345554444 345689999999999975
Q ss_pred C
Q 018416 139 P 139 (356)
Q Consensus 139 p 139 (356)
.
T Consensus 164 s 164 (429)
T PRK10015 164 S 164 (429)
T ss_pred h
Confidence 3
No 177
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.18 E-value=1.8e-05 Score=79.09 Aligned_cols=96 Identities=22% Similarity=0.294 Sum_probs=65.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------cCC-HHH
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR-----------------------------------LFT-PKI 83 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~-----------------------------------~~d-~~~ 83 (356)
-+++|||+|+.|+.+|..++++|.+|+|+++.+ +... .++ .++
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 83 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGIDFKKV 83 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccCHHHH
Confidence 369999999999999999999999999999864 2110 001 111
Q ss_pred HHH-----------HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-CcEEecCeEEEecCCCCCc
Q 018416 84 ASY-----------YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 84 ~~~-----------~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi~a~G~~p~~ 141 (356)
.+. +...+++.||+++.++. +.++ ... ..+...+ ++++.+|.+|+|+|.+|..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~-~~~~---~~~-~~v~~~~~~~~~~~d~lViAtGs~p~~ 148 (462)
T PRK06416 84 QEWKNGVVNRLTGGVEGLLKKNKVDIIRGEA-KLVD---PNT-VRVMTEDGEQTYTAKNIILATGSRPRE 148 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc---CCE-EEEecCCCcEEEEeCEEEEeCCCCCCC
Confidence 112 44456778999998753 3332 222 2344323 4679999999999999863
No 178
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.18 E-value=6.6e-06 Score=81.72 Aligned_cols=92 Identities=12% Similarity=0.166 Sum_probs=62.8
Q ss_pred CCCcEEEECCchHHHHHHHHH-HHCCCcEEEEeeCCccCCcc------CC---HHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416 38 SGGNAVVIGGGYIGMECAASL-VINKINVTMVFPEAHCMARL------FT---PKIASYYEEYYKSKGVKFVKGTVLSSF 107 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L-~~~G~~Vtlv~~~~~~l~~~------~d---~~~~~~~~~~l~~~GV~v~~~~~v~~i 107 (356)
.+++|+|||+|+.|+++|..| ++.|++|+++++.+.+..-. .. ..+...+.+.+...+++++.+..+..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 478999999999999999975 46799999999998874210 11 23445555556678888875544321
Q ss_pred EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
.+..++ -.-.+|.||+|+|..+.
T Consensus 117 ---------Dvt~ee-L~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ---------DLKMEE-LRNHYNCVIFCCGASEV 139 (506)
T ss_pred ---------ccCHHH-HHhcCCEEEEEcCCCCC
Confidence 111111 12369999999997753
No 179
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.17 E-value=1.3e-05 Score=79.90 Aligned_cols=94 Identities=20% Similarity=0.388 Sum_probs=66.5
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------------------------------------CC-H-
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------------------------------------FT-P- 81 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------------------------------------~d-~- 81 (356)
-.++|||+|+.|+.+|..++++|.+|+++++.. +.... ++ +
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-LGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFNWPE 81 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEecccc-cccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccCHHH
Confidence 369999999999999999999999999999852 11100 11 0
Q ss_pred ----------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 82 ----------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 82 ----------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
.+.+.+...+++.||+++.++.. +. ++.. ++. +++.+.+|.+|+|+|.+|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~--~~--~~~~---v~v-~~~~~~~d~vIiAtGs~p~~p 144 (450)
T TIGR01421 82 LKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR--FT--KDGT---VEV-NGRDYTAPHILIATGGKPSFP 144 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE--Ec--cCCE---EEE-CCEEEEeCEEEEecCCCCCCC
Confidence 12223455677889999988653 22 2332 333 567899999999999998654
No 180
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.16 E-value=2.6e-05 Score=76.01 Aligned_cols=100 Identities=25% Similarity=0.282 Sum_probs=72.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 77 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------------- 77 (356)
..+|+|||||+.|+-+|..|++.|.+|+++|+.+.+...
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 357999999999999999999999999999987432000
Q ss_pred ------cCC---------------HHHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416 78 ------LFT---------------PKIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 135 (356)
Q Consensus 78 ------~~d---------------~~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~ 135 (356)
.++ ..+.+.+.+.+.+. ++. +.++++++++.++++ ..+++++|+++.+|.||.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~vI~Ad 163 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDE--VTVTLADGTTLSARLVVGAD 163 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCe--EEEEECCCCEEEEeEEEEec
Confidence 000 11233344455554 466 779999999764433 34778888899999999999
Q ss_pred CCCCCc
Q 018416 136 GIRPNT 141 (356)
Q Consensus 136 G~~p~~ 141 (356)
|..+..
T Consensus 164 G~~S~v 169 (388)
T PRK07494 164 GRNSPV 169 (388)
T ss_pred CCCchh
Confidence 987543
No 181
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.14 E-value=2.8e-05 Score=76.31 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=75.5
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----------------CC----------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------FT---------------------- 80 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----------------~d---------------------- 80 (356)
-.|+|||+|+.|.-+|..|++.|.+|.++|+++.+..+. .+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 369999999999999999999999999999975442110 11
Q ss_pred -----------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 81 -----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 81 -----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
...-+.+.+..++.|++++.+++++.+..++++.+..+ ..++.++.++.||.|.|.+..
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGV-RAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEE-EcCCEEEEcCEEEECCCcchH
Confidence 11233456667789999999999999987555554433 344478999999999996543
No 182
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.14 E-value=2.5e-05 Score=79.74 Aligned_cols=96 Identities=21% Similarity=0.272 Sum_probs=70.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC-ccC--C---c------------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA-HCM--A---R------------------------------------ 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~-~~l--~---~------------------------------------ 77 (356)
-.|+|||||+.|+++|..+++.|.+|.++++.. .+. + .
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 369999999999999999999999999999873 210 0 0
Q ss_pred -----------cCCHH-HHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416 78 -----------LFTPK-IASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 137 (356)
Q Consensus 78 -----------~~d~~-~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 137 (356)
.+|.. ....+.+.+++. |++++ ...++++.. +++.+..|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLF-QGEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 00110 123344445544 88886 556777765 467777888999999999999999994
No 183
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.14 E-value=2.7e-05 Score=84.83 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=71.6
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------C----CHHHHHHHHHHHHhC-CCEEEeCCeeeEE
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F----TPKIASYYEEYYKSK-GVKFVKGTVLSSF 107 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------~----d~~~~~~~~~~l~~~-GV~v~~~~~v~~i 107 (356)
.++|+|||||+.|+.+|..+++.|.+|+|++..+.+.... . ..+....+.+.+++. +|++++++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 4679999999999999999999999999999876653211 1 123434555666666 5999999999887
Q ss_pred EEcCCCcEEEEE-eC-------CC------cEEecCeEEEecCCCCCc
Q 018416 108 DVDSNGKVVAVN-LR-------DG------NRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 108 ~~~~~g~v~~v~-~~-------~g------~~i~~D~vi~a~G~~p~~ 141 (356)
.. ++.+..+. .. ++ .++.+|.||+|+|.+|..
T Consensus 243 ~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 243 YD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred ec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 52 22222221 00 11 268999999999988754
No 184
>PRK06185 hypothetical protein; Provisional
Probab=98.11 E-value=4.7e-05 Score=74.64 Aligned_cols=101 Identities=23% Similarity=0.354 Sum_probs=71.7
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC----------------------c-------------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA----------------------R------------------- 77 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~----------------------~------------------- 77 (356)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+.+.. .
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 45899999999999999999999999999998743100 0
Q ss_pred ---c--C--------------CHHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEE--EeCCCc-EEecCeEEEe
Q 018416 78 ---L--F--------------TPKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAV--NLRDGN-RLPTDMVVVG 134 (356)
Q Consensus 78 ---~--~--------------d~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v--~~~~g~-~i~~D~vi~a 134 (356)
. + ...+.+.+.+.+++ .|++++.++++++++.+ ++.+..+ ...+|+ ++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~A 164 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVGA 164 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEEC
Confidence 0 0 01122333444444 48999999999999763 4544333 344664 7999999999
Q ss_pred cCCCCC
Q 018416 135 IGIRPN 140 (356)
Q Consensus 135 ~G~~p~ 140 (356)
.|....
T Consensus 165 dG~~S~ 170 (407)
T PRK06185 165 DGRHSR 170 (407)
T ss_pred CCCchH
Confidence 997653
No 185
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.10 E-value=1.8e-05 Score=78.00 Aligned_cols=98 Identities=18% Similarity=0.242 Sum_probs=69.4
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccCCcc----CCH-------------HH-------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMARL----FTP-------------KI------------------- 83 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l~~~----~d~-------------~~------------------- 83 (356)
+|+|||||+.|+-+|..|++.| .+|+|+|+.+.+.... +.+ .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6999999999999999999998 5999999986542100 000 00
Q ss_pred ----------------------HHHHHHHHHh--CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 84 ----------------------ASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 84 ----------------------~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
...+.+.|.+ .++.+++++++++++.++++ ..+.+.+|+++++|.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~--~~v~~~~g~~~~ad~vVgADG~~S 159 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEE--VQVLFTDGTEYRCDLLIGADGIKS 159 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCc--EEEEEcCCCEEEeeEEEECCCccH
Confidence 0112222222 14567889999999864444 467788999999999999999765
Q ss_pred C
Q 018416 140 N 140 (356)
Q Consensus 140 ~ 140 (356)
.
T Consensus 160 ~ 160 (414)
T TIGR03219 160 A 160 (414)
T ss_pred H
Confidence 4
No 186
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.09 E-value=2.8e-05 Score=77.90 Aligned_cols=96 Identities=26% Similarity=0.371 Sum_probs=63.8
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----CCH-----------------------------HHH-
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----FTP-----------------------------KIA- 84 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----~d~-----------------------------~~~- 84 (356)
-.++|||+|+.|+.+|..++++|.+|+++++.+.+.... .+. ++.
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~ 83 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNLAQ 83 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccCHHH
Confidence 379999999999999999999999999999743221110 000 000
Q ss_pred -------------HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCC
Q 018416 85 -------------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPN 140 (356)
Q Consensus 85 -------------~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~ 140 (356)
..++..+++.||+++.+. .++. ++.++ .+...+|+ ++++|.+|+|||.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~--a~~~--~~~~v-~v~~~~g~~~~~~~d~lVIATGs~p~ 149 (466)
T PRK06115 84 MMKQKDESVEALTKGVEFLFRKNKVDWIKGW--GRLD--GVGKV-VVKAEDGSETQLEAKDIVIATGSEPT 149 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE--EEEc--cCCEE-EEEcCCCceEEEEeCEEEEeCCCCCC
Confidence 112233455678887665 2443 23332 35555664 6999999999999985
No 187
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.09 E-value=0.0001 Score=72.16 Aligned_cols=152 Identities=18% Similarity=0.212 Sum_probs=103.2
Q ss_pred ECCchHHHHHHHHHH-HCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC
Q 018416 45 IGGGYIGMECAASLV-INKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG 123 (356)
Q Consensus 45 vGgG~iGlE~A~~L~-~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g 123 (356)
.|-+.- .++-..|. +.|+.|.-+-.. -|......+.+.+.+.+++.|++++.++.|.++.. +++++..+.+.++
T Consensus 230 lG~~~~-~~~~~~L~~~~g~~v~E~ptl---PPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~-~~~~v~~V~t~~g 304 (419)
T TIGR03378 230 FGLGDG-LELLRELEQATGLTLCELPTM---PPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF-EGNRVTRIHTRNH 304 (419)
T ss_pred eCCCCh-HHHHHHHHHHHCCCEEeCCCC---CCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe-eCCeEEEEEecCC
Confidence 454432 23333443 348887766433 33445788999999999999999999999999886 4566666776665
Q ss_pred --cEEecCeEEEecCCC-CCchhhhc-----------cc-------cc-----------ccCcEEEeccccc-----CCC
Q 018416 124 --NRLPTDMVVVGIGIR-PNTSLFEG-----------QL-------TL-----------EKGGIKVTGRLQS-----SNS 166 (356)
Q Consensus 124 --~~i~~D~vi~a~G~~-p~~~l~~~-----------~l-------~~-----------~~g~I~vd~~l~t-----s~~ 166 (356)
..+.+|.+|+|+|.- ++ .|.+. .+ .+ -.=+|.+|+++|. ..+
T Consensus 305 ~~~~l~AD~vVLAaGaw~S~-gL~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~ 383 (419)
T TIGR03378 305 RDIPLRADHFVLASGSFFSN-GLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIE 383 (419)
T ss_pred ccceEECCEEEEccCCCcCH-HHHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccc
Confidence 479999999999976 32 22110 00 00 1236889999994 389
Q ss_pred CEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 167 SVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 167 ~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
|+||+|-+...++++.-. -....|+..|..||++|+
T Consensus 384 Nl~a~G~vL~G~d~~~~g----cG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 384 NLYAIGAVLGGYDPIFEG----CGSGVAVSTALHAAEQII 419 (419)
T ss_pred cceEechhhcCCChHhcC----CCchhHHHHHHHHHHhhC
Confidence 999999999988764211 123467788888888763
No 188
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.08 E-value=1.8e-05 Score=76.88 Aligned_cols=94 Identities=18% Similarity=0.323 Sum_probs=65.5
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCc----c----CCHHHHH-------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR----L----FTPKIAS------------------------- 85 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~----~----~d~~~~~------------------------- 85 (356)
.++|||||+.|+.+|..|++. |.+|.++++.+.+.+. + +++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 489999999999999999987 9999999998754321 1 1211111
Q ss_pred ---------HHHHH-HHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 86 ---------YYEEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 86 ---------~~~~~-l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
.+.+. +++.+..++++++|++++. ++ +.+.+|+++.+|.||.|.|.++.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~--~~----v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDA--DG----VDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeC--CE----EEECCCCEEEeeEEEECCCCCCC
Confidence 11122 2222444777888888842 32 44578999999999999998764
No 189
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.08 E-value=3.6e-05 Score=75.60 Aligned_cols=94 Identities=18% Similarity=0.321 Sum_probs=70.3
Q ss_pred EEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------------cC---------------------
Q 018416 43 VVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------LF--------------------- 79 (356)
Q Consensus 43 vVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------~~--------------------- 79 (356)
+|||||+.|+-+|..+++.|.+|+|+|+.+.+... .+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 59999999999999999999999999987643210 00
Q ss_pred -----------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC
Q 018416 80 -----------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136 (356)
Q Consensus 80 -----------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G 136 (356)
..++.+.+.+.+++.|+++++++.+++++.+ ++. ..+++ +++++.+|.||+|+|
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~-~~v~~-~~~~i~ad~VIlAtG 157 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKD-DNG-FGVET-SGGEYEADKVILATG 157 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CCe-EEEEE-CCcEEEcCEEEECCC
Confidence 0123344556677789999999999999763 332 34555 567899999999999
Q ss_pred CCC
Q 018416 137 IRP 139 (356)
Q Consensus 137 ~~p 139 (356)
...
T Consensus 158 ~~s 160 (400)
T TIGR00275 158 GLS 160 (400)
T ss_pred Ccc
Confidence 653
No 190
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.07 E-value=4.3e-05 Score=74.49 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=71.4
Q ss_pred CcEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCcc---CCc--------------------c---------------
Q 018416 40 GNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHC---MAR--------------------L--------------- 78 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~---l~~--------------------~--------------- 78 (356)
-+|+|||+|+.|+-+|..|++. |.+|+|+|+.... .+. .
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 5799999999999999999998 9999999994100 000 0
Q ss_pred -----------CC---------------HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeE
Q 018416 79 -----------FT---------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMV 131 (356)
Q Consensus 79 -----------~d---------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~v 131 (356)
+. .++.+.+.+.+.+ .|++++.+++++++..++++ ..+.+++|..+.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v 161 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGS--VRVTLDDGETLTGRLL 161 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 00 0112233444444 47999999999999763333 3477788888999999
Q ss_pred EEecCCCCC
Q 018416 132 VVGIGIRPN 140 (356)
Q Consensus 132 i~a~G~~p~ 140 (356)
|.|.|....
T Consensus 162 I~AdG~~S~ 170 (395)
T PRK05732 162 VAADGSHSA 170 (395)
T ss_pred EEecCCChh
Confidence 999998764
No 191
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.07 E-value=6e-05 Score=73.73 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=72.1
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--Cc----------------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR---------------------------------------- 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--~~---------------------------------------- 77 (356)
.+|+|||+|+.|+-+|..|++.|.+|+|+|+.+... ..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 579999999999999999999999999999886410 00
Q ss_pred --c--C-------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEE-cCCCcEEEEEe-CCCc--EEecCeEEEecC
Q 018416 78 --L--F-------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNL-RDGN--RLPTDMVVVGIG 136 (356)
Q Consensus 78 --~--~-------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~v~~v~~-~~g~--~i~~D~vi~a~G 136 (356)
. + .+++.+.+.+...+.|+++++++++++++. ++++ ..+++ .+|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~--~~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR--PYVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc--eEEEEEcCCeEEEEEeCEEEECCC
Confidence 0 0 012223344444667999999999999875 2222 34555 4664 689999999999
Q ss_pred CCCCc
Q 018416 137 IRPNT 141 (356)
Q Consensus 137 ~~p~~ 141 (356)
.+...
T Consensus 161 ~~S~v 165 (392)
T PRK08243 161 FHGVS 165 (392)
T ss_pred CCCch
Confidence 87654
No 192
>PRK06370 mercuric reductase; Validated
Probab=98.05 E-value=2.6e-05 Score=78.10 Aligned_cols=95 Identities=21% Similarity=0.292 Sum_probs=65.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc---cC-----Cc---------------------------cCCH-HH
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH---CM-----AR---------------------------LFTP-KI 83 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~---~l-----~~---------------------------~~d~-~~ 83 (356)
-.++|||+|+.|+.+|..++++|++|+++++.+. ++ |. .+|- ++
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~ 85 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSVDFKAV 85 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCccCHHHH
Confidence 5799999999999999999999999999998520 00 00 0111 11
Q ss_pred -----------HHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 84 -----------ASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 84 -----------~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
...+.+.+++. ||+++.++.+. + ++. .++. +++++.+|.+|+|+|.+|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~-~---~~~---~v~v-~~~~~~~d~lViATGs~p~~p 148 (463)
T PRK06370 86 MARKRRIRARSRHGSEQWLRGLEGVDVFRGHARF-E---SPN---TVRV-GGETLRAKRIFINTGARAAIP 148 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEE-c---cCC---EEEE-CcEEEEeCEEEEcCCCCCCCC
Confidence 12234556666 99999887542 1 222 2333 467899999999999998754
No 193
>PRK13984 putative oxidoreductase; Provisional
Probab=98.05 E-value=1.2e-05 Score=83.11 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=69.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------Cc-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------AR-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
++++++|||+|+.|+.+|..|+++|.+|+++++.+.+. +. .+..++.....+.+++.|+++++++.+..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~-- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGKD-- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCCc--
Confidence 57889999999999999999999999999999887642 11 135566666667889999999999876320
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
+.+.+ ...++|.||+|+|..+
T Consensus 360 --------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 --------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred --------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 2357999999999763
No 194
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=98.04 E-value=9.4e-05 Score=56.23 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=59.2
Q ss_pred eEEEEecCceEEEeeccc--ceEEEEccCCCCceEEEEeeCCeEEEEEEeCCCHHHHHHHHHHHHcCCCcCcHHHHhhc
Q 018416 219 FFYSRVFTLSWQFYGDNV--GEVVHYGNFSGTTFGAYWVNKGRLVGSFLEGGTKEEYEAIAKATRLQPVVEDLAELETQ 295 (356)
Q Consensus 219 ~~~~~~~~~~~~~~G~~~--~~~~~~g~~~~~~~~~~~~~~g~ilGa~~vg~~~~~~~~~a~ai~~~~~~~dl~~l~~~ 295 (356)
|||+.+|+..++++|... ++.+..|+.+..+|..++.++|+++|+..+|. +.++..+..+|+.+..++ ...|.++
T Consensus 1 ~FWSdQ~~~~iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~vn~-~~~~~~~rrli~~~~~~~-~~~l~d~ 77 (85)
T PF14759_consen 1 WFWSDQYGVRIQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVSVNR-PRDLRAARRLIAAGARVD-PARLADP 77 (85)
T ss_dssp EEEEEETTEEEEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEEES--HHHHHHHHHHHHTT-B---HHHHHST
T ss_pred CeecccCCCeEEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEecCC-HHHHHHHHHHHHCCCCcC-HHHhcCC
Confidence 689999999999999754 56778888777779999999999999999994 778888899999998775 4555533
No 195
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.04 E-value=0.00012 Score=72.93 Aligned_cols=137 Identities=25% Similarity=0.341 Sum_probs=88.7
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeCCccCCc---------------------c--C--------CHHHHHH
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKIN-VTMVFPEAHCMAR---------------------L--F--------TPKIASY 86 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~~~~l~~---------------------~--~--------d~~~~~~ 86 (356)
..+|+|||+|+.|+-+|..|.+.|.. +.++|+++.+... + + -+++.+.
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 46899999999999999999999999 9999998543100 0 1 0226777
Q ss_pred HHHHHHhCCCE--EEeCCeeeEEEEcCCCcEEEEEeCCCcE--EecCeEEEecCC--CCCchhhhcccccccCcEEE---
Q 018416 87 YEEYYKSKGVK--FVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGI--RPNTSLFEGQLTLEKGGIKV--- 157 (356)
Q Consensus 87 ~~~~l~~~GV~--v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~--~p~~~l~~~~l~~~~g~I~v--- 157 (356)
+...+++.++. +..++.|+.+..++++..-.|.++++.+ +.+|.||+|+|. .|+..-+.. ...-.|.+.=
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G-~~~f~g~~~HS~~ 166 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAG-LDEFKGRILHSAD 166 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCC-ccCCCceEEchhc
Confidence 88888876654 4455666666665666556677777765 559999999995 344332221 1111222221
Q ss_pred -ecccccCCCCEEEEccccc
Q 018416 158 -TGRLQSSNSSVYAVGDVAA 176 (356)
Q Consensus 158 -d~~l~ts~~~VyAiGD~~~ 176 (356)
.+...-.-.+|-+||--++
T Consensus 167 ~~~~~~~~GKrV~VIG~GaS 186 (443)
T COG2072 167 WPNPEDLRGKRVLVIGAGAS 186 (443)
T ss_pred CCCccccCCCeEEEECCCcc
Confidence 1122334577888886655
No 196
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.02 E-value=6.7e-05 Score=74.93 Aligned_cols=57 Identities=25% Similarity=0.540 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
..+.|.+..+++||+++.++ |+.+..+++|.+..|++++|+++++|++|=|+|++..
T Consensus 156 fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 156 FDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 44556777788999999885 7777766788899999999999999999999998643
No 197
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.02 E-value=1.5e-05 Score=81.82 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=67.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--------ccCCHHHHHHHHHHHHhCCCEEEeCCee-eEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------RLFTPKIASYYEEYYKSKGVKFVKGTVL-SSFD 108 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--------~~~d~~~~~~~~~~l~~~GV~v~~~~~v-~~i~ 108 (356)
.+++|+|||+|++|+.+|..|+++|.+|+++++.+.+.. ..++.+..+.-.+.+++.|++++.++.+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 578999999999999999999999999999998776421 1145556665566778899999988765 3221
Q ss_pred EcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 109 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 109 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
. . .....+|.|++++|..+.
T Consensus 216 ~-----------~-~~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 L-----------E-QLEGEFDAVFVAIGAQLG 235 (564)
T ss_pred H-----------H-HHHhhCCEEEEeeCCCCC
Confidence 1 0 011248999999998654
No 198
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.02 E-value=6.1e-05 Score=74.82 Aligned_cols=102 Identities=25% Similarity=0.347 Sum_probs=73.8
Q ss_pred cEEEECCchHHHHHHHHHHH----CCCcEEEEeeCC--ccC------------Cc-------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVI----NKINVTMVFPEA--HCM------------AR------------------------- 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~----~G~~Vtlv~~~~--~~l------------~~------------------------- 77 (356)
.|+|||||++|+-+|..|++ .|++|+|+|+.+ ... ++
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 58999999999999999998 799999999832 210 00
Q ss_pred ------------------cCC--------------HHHHHHHHHHHHhCC---CEEEeCCeeeEEEEc-----CCCcEEE
Q 018416 78 ------------------LFT--------------PKIASYYEEYYKSKG---VKFVKGTVLSSFDVD-----SNGKVVA 117 (356)
Q Consensus 78 ------------------~~d--------------~~~~~~~~~~l~~~G---V~v~~~~~v~~i~~~-----~~g~v~~ 117 (356)
.++ ..+.+.+.+.+++.+ |+++.++++++++.. +++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~ 161 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVH 161 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceE
Confidence 000 112333455556654 999999999999641 1233356
Q ss_pred EEeCCCcEEecCeEEEecCCCCCch
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+++.+|+++.+|+||-|-|......
T Consensus 162 v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 162 ITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred EEEcCCCEEEeeEEEEecCCCChhH
Confidence 7888999999999999999876553
No 199
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.02 E-value=8.8e-05 Score=75.70 Aligned_cols=98 Identities=15% Similarity=0.264 Sum_probs=71.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC------------------Cc-------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------AR------------------------- 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l------------------~~------------------------- 77 (356)
.|+|||+|++|+++|..+++.|.+|+++++..... ..
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 48999999999999999999999999999753110 00
Q ss_pred ----------cCCH-HHHHHHHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 78 ----------LFTP-KIASYYEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 78 ----------~~d~-~~~~~~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
.+|+ .....+.+.+++. +++++.+ .++++..++++.+..|.+.+|..+.||.||+|+|.-.
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~-~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQG-EVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEe-EEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0011 1123455556665 7888755 5666654336778889999999999999999999764
No 200
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.01 E-value=7.5e-05 Score=73.05 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=37.6
Q ss_pred HHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 88 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 88 ~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
.+.+++.|++++.++.+++++.. ++.+ .+.+.++ ++.+|.||+|+|....
T Consensus 156 ~~~~~~~Gv~i~~~~~V~~i~~~-~~~~-~V~~~~g-~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 156 AELIQARGGEIRLGAEVTALDEH-ANGV-VVRTTQG-EYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHhCCCEEEcCCEEEEEEec-CCeE-EEEECCC-EEEeCEEEECCCcchH
Confidence 34456679999999999998763 3333 4666666 7999999999997653
No 201
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.00 E-value=0.00011 Score=74.54 Aligned_cols=106 Identities=15% Similarity=0.198 Sum_probs=78.5
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------------------------------------cCC-
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------------LFT- 80 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------------------------------------~~d- 80 (356)
-.|||||+|..|+-+|..+++.|.+|.|+|+.+.+... ..|
T Consensus 62 ~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~d~ 141 (506)
T PRK06481 62 YDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTNDK 141 (506)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 36999999999999999999999999999987542100 000
Q ss_pred ------------------------------------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCC
Q 018416 81 ------------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSN 112 (356)
Q Consensus 81 ------------------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~ 112 (356)
..+...+.+.+++.||++++++.++++.. ++
T Consensus 142 ~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~-~~ 220 (506)
T PRK06481 142 ALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE-KD 220 (506)
T ss_pred HHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEe-cC
Confidence 12334455566778999999999999976 46
Q ss_pred CcEEEEEe--CCC--cEEecCeEEEecC-CCCCchhhhc
Q 018416 113 GKVVAVNL--RDG--NRLPTDMVVVGIG-IRPNTSLFEG 146 (356)
Q Consensus 113 g~v~~v~~--~~g--~~i~~D~vi~a~G-~~p~~~l~~~ 146 (356)
+++..+.. .++ .++.++.||+|+| +.+|.++...
T Consensus 221 g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 221 GKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred CEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 76665554 343 3589999999998 7778776654
No 202
>PRK09897 hypothetical protein; Provisional
Probab=97.99 E-value=0.00011 Score=74.67 Aligned_cols=99 Identities=11% Similarity=0.171 Sum_probs=67.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccCCc----------------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCMAR---------------------------------------- 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l~~---------------------------------------- 77 (356)
++|+|||+|+.|+-+|..|.+.+ .+|+|+++.+.+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 58999999999999999998865 489999996443211
Q ss_pred --------------c-----CCHHHHHH---HHHHHHhCC--CEEEeCCeeeEEEEcCCCcEEEEEeCC-CcEEecCeEE
Q 018416 78 --------------L-----FTPKIASY---YEEYYKSKG--VKFVKGTVLSSFDVDSNGKVVAVNLRD-GNRLPTDMVV 132 (356)
Q Consensus 78 --------------~-----~d~~~~~~---~~~~l~~~G--V~v~~~~~v~~i~~~~~g~v~~v~~~~-g~~i~~D~vi 132 (356)
+ +...+... +.+.+.+.| ++++.+++|++++..+++ ..+.+.+ +..+.+|.||
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g--~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAG--VMLATNQDLPSETFDLAV 159 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCE--EEEEECCCCeEEEcCEEE
Confidence 0 00011111 222334455 788889999999874433 3466655 4789999999
Q ss_pred EecCCCCC
Q 018416 133 VGIGIRPN 140 (356)
Q Consensus 133 ~a~G~~p~ 140 (356)
+|+|..++
T Consensus 160 LAtGh~~p 167 (534)
T PRK09897 160 IATGHVWP 167 (534)
T ss_pred ECCCCCCC
Confidence 99997554
No 203
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.99 E-value=9e-05 Score=72.70 Aligned_cols=57 Identities=21% Similarity=0.404 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcE-EecCeEEEecCCCCC
Q 018416 83 IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR-LPTDMVVVGIGIRPN 140 (356)
Q Consensus 83 ~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~-i~~D~vi~a~G~~p~ 140 (356)
+...+.+.++++|++++++++|+.++..++| +..+.+.+|++ ++|+.||.|.|....
T Consensus 155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg-~~~~~~~~g~~~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 155 LTRALAEEAQANGVELRLNTEVTGIEKQSDG-VFVLNTSNGEETLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHcCCEEEecCeeeEEEEeCCc-eEEEEecCCcEEEEeeEEEECCchhHH
Confidence 3455667778889999999999999986665 56677888877 999999999996543
No 204
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.99 E-value=6.4e-06 Score=81.62 Aligned_cols=96 Identities=19% Similarity=0.312 Sum_probs=27.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-------------------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------------- 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------------- 77 (356)
.|||||||+.|+-+|..+++.|.+|.|+|+.+.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 3899999999999999999999999999998654100
Q ss_pred -----cCCHHHH-HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---CcEEecCeEEEecCC
Q 018416 78 -----LFTPKIA-SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---GNRLPTDMVVVGIGI 137 (356)
Q Consensus 78 -----~~d~~~~-~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g~~i~~D~vi~a~G~ 137 (356)
.++++.. ..+.+.+++.||++++++.+.++.. +++++..|.+.+ ..++.++.+|=|+|.
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 1222222 2345566778999999999999987 566788887765 467999999999993
No 205
>PRK14694 putative mercuric reductase; Provisional
Probab=97.98 E-value=3.3e-05 Score=77.42 Aligned_cols=99 Identities=21% Similarity=0.303 Sum_probs=65.8
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc--------------------------cCC---cc------CCH-H
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------------------------CMA---RL------FTP-K 82 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~--------------------------~l~---~~------~d~-~ 82 (356)
.-.++|||+|+.|+.+|..|++.|.+|+++++.+- -.+ .. +|. +
T Consensus 6 ~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (468)
T PRK14694 6 NLHIAVIGSGGSAMAAALKATERGARVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVVDRSA 85 (468)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCccCHHH
Confidence 45799999999999999999999999999998630 000 00 111 1
Q ss_pred HHHH------------HHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCch
Q 018416 83 IASY------------YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 83 ~~~~------------~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~ 142 (356)
+.+. ....+++. +|+++.+ .++.++. +. ..|.+.+| +++++|.+|+|+|.+|...
T Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~--~~--~~V~~~~g~~~~~~~d~lViATGs~p~~p 155 (468)
T PRK14694 86 LLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDE--RT--LTVTLNDGGEQTVHFDRAFIGTGARPAEP 155 (468)
T ss_pred HHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecC--CE--EEEEecCCCeEEEECCEEEEeCCCCCCCC
Confidence 1111 11123333 7888876 4555532 22 35666676 3799999999999998654
No 206
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.98 E-value=1.5e-05 Score=84.80 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=32.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
.+|+|+|||+|+.|+++|..|+++|++||++++.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 57899999999999999999999999999999753
No 207
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.98 E-value=5.1e-05 Score=75.93 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=64.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc----------------------------------CC------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------------------FT------ 80 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~----------------------------------~d------ 80 (356)
.++|||+|+.|+.+|..++++|.+|+++++.+ +.... +|
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGELLE 80 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHHHHH
Confidence 58999999999999999999999999999853 11110 01
Q ss_pred --HHHHHH-----HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-EEecCeEEEecCCCCCch
Q 018416 81 --PKIASY-----YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-RLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 81 --~~~~~~-----~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-~i~~D~vi~a~G~~p~~~ 142 (356)
.++... +.+.+++.||+++.+... .+ ++. .+.+.+|+ .+.+|.+|+|+|.+|...
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~-~~---~~~---~v~v~~g~~~~~~~~lIiATGs~p~~p 143 (463)
T TIGR02053 81 GKREVVEELRHEKYEDVLSSYGVDYLRGRAR-FK---DPK---TVKVDLGREVRGAKRFLIATGARPAIP 143 (463)
T ss_pred HHHHHHHHHhhhhHHHHHHhCCcEEEEEEEE-Ec---cCC---EEEEcCCeEEEEeCEEEEcCCCCCCCC
Confidence 011111 334567789999877532 22 222 34555553 689999999999998654
No 208
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.98 E-value=0.00012 Score=72.64 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=76.5
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccCCc--------------------------------------cCC-
Q 018416 41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR--------------------------------------LFT- 80 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l~~--------------------------------------~~d- 80 (356)
.|||||+|..|+-+|..+++.| .+|+|+|+.+..... ..+
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 4899999999999999999999 999999986432100 001
Q ss_pred -------------------------------------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcC
Q 018416 81 -------------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDS 111 (356)
Q Consensus 81 -------------------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~ 111 (356)
.++.+.+.+.+++.|+++++++.++++..++
T Consensus 81 ~l~~~~~~~~~~~i~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~ 160 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQDGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD 160 (439)
T ss_pred HHHHHHHhccHHHHHHHHhCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECC
Confidence 1233445556677899999999999998755
Q ss_pred CCcEEEEEeC--CCc--EEecCeEEEecC-CCCCchhhh
Q 018416 112 NGKVVAVNLR--DGN--RLPTDMVVVGIG-IRPNTSLFE 145 (356)
Q Consensus 112 ~g~v~~v~~~--~g~--~i~~D~vi~a~G-~~p~~~l~~ 145 (356)
++++..+... +++ .+.++.||+|+| ...|.++.+
T Consensus 161 ~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~ 199 (439)
T TIGR01813 161 QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA 199 (439)
T ss_pred CCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence 6666665543 343 478999999999 556666654
No 209
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.97 E-value=0.00014 Score=71.99 Aligned_cols=138 Identities=22% Similarity=0.238 Sum_probs=90.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC----------------------------------------Cc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------------------------AR 77 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----------------------------------------~~ 77 (356)
..++++|||+|++|+-.|..|.+.|.+|+++||.+.+. ++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 36899999999999999999999999999999986541 11
Q ss_pred c-CCH-HHHHHHHHHHHhCCC--EEEeCCeeeEEEEcCCCcEEEEEeCCC----cEEecCeEEEecCCC--CCchhhhcc
Q 018416 78 L-FTP-KIASYYEEYYKSKGV--KFVKGTVLSSFDVDSNGKVVAVNLRDG----NRLPTDMVVVGIGIR--PNTSLFEGQ 147 (356)
Q Consensus 78 ~-~d~-~~~~~~~~~l~~~GV--~v~~~~~v~~i~~~~~g~v~~v~~~~g----~~i~~D~vi~a~G~~--p~~~l~~~~ 147 (356)
. -+. ++.++++...+..++ .+.+++.+.+++...+|.-. |.+.++ ++.-+|.|++|+|.- |+.......
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~-V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~ 163 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWR-VTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGP 163 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCcee-EEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCC
Confidence 1 111 566777777777775 57778888888764434332 333322 356799999999976 665544432
Q ss_pred -cccccCc-EEEeccccc---CCCCEEEEccccc
Q 018416 148 -LTLEKGG-IKVTGRLQS---SNSSVYAVGDVAA 176 (356)
Q Consensus 148 -l~~~~g~-I~vd~~l~t---s~~~VyAiGD~~~ 176 (356)
++.-.|. |-.-++... ....|.+||--.+
T Consensus 164 ~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 164 GIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred chhhcCCcceehhhccCcccccCceEEEECCCcc
Confidence 2222232 222233222 3567888885544
No 210
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.97 E-value=3.4e-05 Score=73.11 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=38.8
Q ss_pred CCccCCCCCCCCCCeEEeCCHHHHHHHHHHHh-------cCCCCcEEEECCchHHHHHHHHHHH
Q 018416 4 KLEEFGLSGSDAENVCYLRDLADANRLVNVMK-------SCSGGNAVVIGGGYIGMECAASLVI 60 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~~~da~~i~~~l~-------~~~~~~vvVvGgG~iGlE~A~~L~~ 60 (356)
.++.++|||.++++|+..|- +.....-+. ...+.+|+|||.|.+++++|..|..
T Consensus 120 ~dR~L~IPGe~l~~V~Sare---fv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls 180 (468)
T KOG1800|consen 120 GDRRLDIPGEELSGVISARE---FVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLS 180 (468)
T ss_pred CCcccCCCCcccccceehhh---hhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhC
Confidence 57899999999999995432 222222110 1136799999999999999998863
No 211
>PRK13748 putative mercuric reductase; Provisional
Probab=97.96 E-value=0.00013 Score=74.84 Aligned_cols=111 Identities=17% Similarity=0.254 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcC-------CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-----------------------
Q 018416 26 DANRLVNVMKSC-------SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM----------------------- 75 (356)
Q Consensus 26 da~~i~~~l~~~-------~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l----------------------- 75 (356)
...++++++... ..-.++|||+|+.|+.+|..+++.|.+|.++++.. +.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~ 156 (561)
T PRK13748 78 LLDKMRGWLGGADKHSGNERPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHL 156 (561)
T ss_pred hhhhhhhhhccccchhcccCCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc-ceeeccccCccccHHHHHHHHHHHH
Confidence 345566666532 22489999999999999999999999999999862 10
Q ss_pred ----C---cc------CCH-HHHHH------------HHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EE
Q 018416 76 ----A---RL------FTP-KIASY------------YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RL 126 (356)
Q Consensus 76 ----~---~~------~d~-~~~~~------------~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i 126 (356)
+ .. ++. .+.+. ..+.+++. +|+++.+. +..+ ++.. ..+.+.+|+ ++
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~-~~~~---~~~~-~~v~~~~g~~~~~ 231 (561)
T PRK13748 157 RRESPFDGGIAATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGE-ARFK---DDQT-LIVRLNDGGERVV 231 (561)
T ss_pred HhcccccCCccCCCCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEE-EEEe---cCCE-EEEEeCCCceEEE
Confidence 0 00 111 11111 11223444 78888763 3333 2232 345556663 69
Q ss_pred ecCeEEEecCCCCCch
Q 018416 127 PTDMVVVGIGIRPNTS 142 (356)
Q Consensus 127 ~~D~vi~a~G~~p~~~ 142 (356)
.+|.+|+|+|.+|...
T Consensus 232 ~~d~lviAtGs~p~~p 247 (561)
T PRK13748 232 AFDRCLIATGASPAVP 247 (561)
T ss_pred EcCEEEEcCCCCCCCC
Confidence 9999999999998754
No 212
>PRK06996 hypothetical protein; Provisional
Probab=97.95 E-value=8.9e-05 Score=72.70 Aligned_cols=98 Identities=15% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCcEEEECCchHHHHHHHHHHHCC----CcEEEEeeCCccCC----c---------------------------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINK----INVTMVFPEAHCMA----R--------------------------------- 77 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G----~~Vtlv~~~~~~l~----~--------------------------------- 77 (356)
..+|+|||||+.|+-+|..|++.| .+|+++++.+..-+ +
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 458999999999999999999987 47999998631100 0
Q ss_pred --------------------cC-CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC---cEEecCeEEE
Q 018416 78 --------------------LF-TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG---NRLPTDMVVV 133 (356)
Q Consensus 78 --------------------~~-d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g---~~i~~D~vi~ 133 (356)
.+ -.++.+.+.+.+++.|++++.++++++++.++++ ..+.+.++ +++.+|+||-
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~--v~v~~~~~~g~~~i~a~lvIg 168 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG--VTLALGTPQGARTLRARIAVQ 168 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe--EEEEECCCCcceEEeeeEEEE
Confidence 00 0234566677788889999999999999764444 34666654 5899999999
Q ss_pred ecCCC
Q 018416 134 GIGIR 138 (356)
Q Consensus 134 a~G~~ 138 (356)
|.|..
T Consensus 169 ADG~~ 173 (398)
T PRK06996 169 AEGGL 173 (398)
T ss_pred CCCCC
Confidence 99964
No 213
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.94 E-value=7.2e-05 Score=74.72 Aligned_cols=95 Identities=24% Similarity=0.328 Sum_probs=62.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc----------------------------C-------C-HHH-
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL----------------------------F-------T-PKI- 83 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~----------------------------~-------d-~~~- 83 (356)
.++|||||+.|+.+|..|+++|.+|+++++ +.+.... + + +.+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 81 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWEKMQ 81 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHHHHH
Confidence 599999999999999999999999999998 4431110 0 0 000
Q ss_pred ----------HHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCc
Q 018416 84 ----------ASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 84 ----------~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~ 141 (356)
...+...+++.||+++.+... .+ ++.. ..+...+| .++.+|.+|+|+|.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~-~~---~~~~-~~v~~~~g~~~~~~d~lVlAtG~~p~~ 145 (461)
T TIGR01350 82 KRKNKVVKKLVGGVKGLLKKNKVTVIKGEAK-FL---DPGT-VLVTGENGEETLTAKNIIIATGSRPRS 145 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-Ec---cCCE-EEEecCCCcEEEEeCEEEEcCCCCCCC
Confidence 011123345567888766432 22 2222 23444444 479999999999998864
No 214
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.94 E-value=0.00012 Score=71.70 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=70.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--Cc----cC----------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--AR----LF---------------------------------- 79 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--~~----~~---------------------------------- 79 (356)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. .+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999886411 00 00
Q ss_pred ------C-------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCc--EEecCeEEEecCC
Q 018416 80 ------T-------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTDMVVVGIGI 137 (356)
Q Consensus 80 ------d-------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D~vi~a~G~ 137 (356)
+ +.+...+.+.+.+.|++++++.+++++...++.. ..|.+. +|+ ++.+|+||-|-|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~~g~~~~i~adlvIGADG~ 161 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDR-PYVTFERDGERHRLDCDFIAGCDGF 161 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCc-cEEEEEECCeEEEEEeCEEEECCCC
Confidence 0 1122334445556788888888877775312222 345564 675 6899999999997
Q ss_pred CCCc
Q 018416 138 RPNT 141 (356)
Q Consensus 138 ~p~~ 141 (356)
+...
T Consensus 162 ~S~V 165 (390)
T TIGR02360 162 HGVS 165 (390)
T ss_pred chhh
Confidence 6644
No 215
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.93 E-value=2.2e-05 Score=82.75 Aligned_cols=92 Identities=21% Similarity=0.308 Sum_probs=72.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------c-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++|.|||+|+.|+-+|..|.+.|+.||+.+|.+++.. . -+|.-+.++-.+.|.+.||+|.+|+.+-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~-- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH-- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc--
Confidence 478999999999999999999999999999999998732 1 157778888888899999999999875321
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
+.+ |+-.-+.|.|++|+|..-.
T Consensus 1862 --------vs~-d~l~~~~daiv~a~gst~p 1883 (2142)
T KOG0399|consen 1862 --------VSL-DELKKENDAIVLATGSTTP 1883 (2142)
T ss_pred --------ccH-HHHhhccCeEEEEeCCCCC
Confidence 111 3334467999999996533
No 216
>PRK07538 hypothetical protein; Provisional
Probab=97.93 E-value=0.0001 Score=72.53 Aligned_cols=99 Identities=19% Similarity=0.225 Sum_probs=68.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-----------------CC-----------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-----------------FT----------------------- 80 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-----------------~d----------------------- 80 (356)
+|+|||||+.|+-+|..|++.|.+|+++|+.+.+.+.. +.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 69999999999999999999999999999986431100 00
Q ss_pred --------------------HHHHHHHHHHHHh-CC-CEEEeCCeeeEEEEcCCCcEEEEEeCC-----CcEEecCeEEE
Q 018416 81 --------------------PKIASYYEEYYKS-KG-VKFVKGTVLSSFDVDSNGKVVAVNLRD-----GNRLPTDMVVV 133 (356)
Q Consensus 81 --------------------~~~~~~~~~~l~~-~G-V~v~~~~~v~~i~~~~~g~v~~v~~~~-----g~~i~~D~vi~ 133 (356)
.++.+.+.+.+.+ .| +++++++++++++.++++.+ +.+.+ ++++.+|+||-
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvIg 159 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLIG 159 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceE--EEEeccCCCccceEEeeEEEE
Confidence 0111223333333 35 46999999999987555533 33333 24899999999
Q ss_pred ecCCCCCc
Q 018416 134 GIGIRPNT 141 (356)
Q Consensus 134 a~G~~p~~ 141 (356)
|-|.....
T Consensus 160 ADG~~S~v 167 (413)
T PRK07538 160 ADGIHSAV 167 (413)
T ss_pred CCCCCHHH
Confidence 99976543
No 217
>PRK06126 hypothetical protein; Provisional
Probab=97.92 E-value=0.00014 Score=74.40 Aligned_cols=100 Identities=21% Similarity=0.326 Sum_probs=70.2
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc-----------------------------------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------------------------------- 77 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------------------------------- 77 (356)
..+|+|||||+.|+-+|..|+++|++|+|+|+.+.+...
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 468999999999999999999999999999987421000
Q ss_pred -------------c----------------------CC-HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEEe
Q 018416 78 -------------L----------------------FT-PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVNL 120 (356)
Q Consensus 78 -------------~----------------------~d-~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~~ 120 (356)
. ++ ..+.+.+.+.+++ .|+++++++++++++.++++ +. +.+
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~-v~-v~~ 164 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG-VT-ATV 164 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe-EE-EEE
Confidence 0 00 0022233334443 48999999999999874444 32 333
Q ss_pred ---CCCc--EEecCeEEEecCCCCC
Q 018416 121 ---RDGN--RLPTDMVVVGIGIRPN 140 (356)
Q Consensus 121 ---~~g~--~i~~D~vi~a~G~~p~ 140 (356)
.+|+ ++.+|+||.|.|.+..
T Consensus 165 ~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EECCCCcEEEEEEEEEEecCCcchH
Confidence 3454 6899999999997664
No 218
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.91 E-value=1.6e-05 Score=78.93 Aligned_cols=90 Identities=22% Similarity=0.234 Sum_probs=70.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------c-cCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------R-LFTPKIASYYEEYYKSKGVKFVKGTVLSSFDV 109 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------~-~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~ 109 (356)
.+++|+|||+|+.|+.+|..|++.|++||++++.+.+.. . .++.++.+...+.|++.||+|+.++.+-.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~--- 198 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR--- 198 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC---
Confidence 468999999999999999999999999999999887632 1 15678999999999999999999987631
Q ss_pred cCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 110 DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 110 ~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
.+++++ ..-++|.|++++|..
T Consensus 199 -------~it~~~-L~~e~Dav~l~~G~~ 219 (457)
T COG0493 199 -------DITLEE-LLKEYDAVFLATGAG 219 (457)
T ss_pred -------cCCHHH-HHHhhCEEEEecccc
Confidence 111111 123459999999943
No 219
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=97.91 E-value=4.8e-05 Score=74.19 Aligned_cols=99 Identities=22% Similarity=0.352 Sum_probs=77.6
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCCccCC------cc---CCHHHHHHHHHHHHhCCCEEEeCCeeeEE
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEAHCMA------RL---FTPKIASYYEEYYKSKGVKFVKGTVLSSF 107 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~~~l~------~~---~d~~~~~~~~~~l~~~GV~v~~~~~v~~i 107 (356)
.++++|||+|+.|.-+++.+++.|. +++++.+...+.. .. .....+....+.+++.||++++++.++++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~ 153 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA 153 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhcccceeeccccccccChhhHhhcCceEEEcceeEEe
Confidence 5789999999999999999999876 6788876644311 11 12344555667899999999999999999
Q ss_pred EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416 108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 141 (356)
+-. + ..+.+.+|+.+++|.+++|||..|++
T Consensus 154 D~~-~---K~l~~~~Ge~~kys~LilATGs~~~~ 183 (478)
T KOG1336|consen 154 DLA-S---KTLVLGNGETLKYSKLIIATGSSAKT 183 (478)
T ss_pred ecc-c---cEEEeCCCceeecceEEEeecCcccc
Confidence 752 2 36788999999999999999996554
No 220
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.90 E-value=0.00014 Score=72.74 Aligned_cols=96 Identities=22% Similarity=0.302 Sum_probs=63.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc---C-----C------------------c----------cCCH-HH
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC---M-----A------------------R----------LFTP-KI 83 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~---l-----~------------------~----------~~d~-~~ 83 (356)
+++|||+|+.|+.+|..+++.|.+|+++++.+.- + | . ..|. .+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 81 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDWKQM 81 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCHHHH
Confidence 6999999999999999999999999999986320 0 0 0 0111 11
Q ss_pred H-----------HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCCCCCc
Q 018416 84 A-----------SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 84 ~-----------~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~~p~~ 141 (356)
. +.++..+++.||+++.+.- ..+ ++.. ..+..+++ +++++|.+|+|+|.+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~---~~~~-v~v~~~~~~~~~~~d~lviATGs~p~~ 146 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKA-SFE---TDHR-VRVEYGDKEEVVDAEQFIIAAGSEPTE 146 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE-EEc---cCCE-EEEeeCCCcEEEECCEEEEeCCCCCCC
Confidence 1 1123345567888876642 222 2333 24554555 479999999999999863
No 221
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=97.90 E-value=0.00019 Score=63.66 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=68.8
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc------C-------------------------------CH
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL------F-------------------------------TP 81 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~------~-------------------------------d~ 81 (356)
...|+|||+|+.|+-+|..|++.|.+|.++|+...+.... | ..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 4689999999999999999999999999999975542110 0 11
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-----------CCcEEecCeEEEecCCCCCc
Q 018416 82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g~~i~~D~vi~a~G~~p~~ 141 (356)
+....+....-+.|++++..+.++.+--.+++++..+..+ |.-.+++..||=+||...+.
T Consensus 97 ~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 2233333344458999999999998865344777776653 22479999999999987654
No 222
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.89 E-value=0.00019 Score=69.64 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
+|+|||||.+|+-+|..|+++|.+|+|+++.
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5899999999999999999999999999985
No 223
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.89 E-value=0.00013 Score=70.95 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=71.0
Q ss_pred cEEEECCchHHHHHHHHH--HHCCCcEEEEeeCCcc--CCc----c----C-----------------------------
Q 018416 41 NAVVIGGGYIGMECAASL--VINKINVTMVFPEAHC--MAR----L----F----------------------------- 79 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L--~~~G~~Vtlv~~~~~~--l~~----~----~----------------------------- 79 (356)
.|+|||+|+.|+-+|..| ++.|.+|.++++.+.. -.. + .
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~ 80 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP 80 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence 389999999999999999 8889999999987554 100 0 0
Q ss_pred -----CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 80 -----TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 80 -----d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
..+..+.+.+.+.+.| .++.+++|++++.+++ ...+.+++|+++.++.||-|.|..+.
T Consensus 81 Y~~i~~~~f~~~l~~~~~~~~-~~~~~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 81 YCMIDRADFYEFLLERAAAGG-VIRLNARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEEHHHHHHHHHHHhhhCC-eEEEccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 0123344555566445 4567889999987443 34578899999999999999996544
No 224
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.88 E-value=0.00016 Score=70.65 Aligned_cols=97 Identities=23% Similarity=0.421 Sum_probs=66.9
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeC-Ccc-----------CCc-------------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPE-AHC-----------MAR------------------------------- 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~-~~~-----------l~~------------------------------- 77 (356)
+|+|||||+.|+-+|..|++.|.+|+++|+. +.+ +..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999987 211 000
Q ss_pred ---c---CCH-HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC------C--cEEecCeEEEecCCCCC
Q 018416 78 ---L---FTP-KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD------G--NRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 78 ---~---~d~-~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~------g--~~i~~D~vi~a~G~~p~ 140 (356)
. ++. .+-+.+.+...+.|++++.+ .++++..++++ ..+.+.+ + .++.+|.||.|.|..+.
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~--~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDG--VTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCe--EEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 0 010 12233455556789999765 58888764333 2344432 2 47999999999997653
No 225
>PRK11445 putative oxidoreductase; Provisional
Probab=97.87 E-value=0.00022 Score=68.76 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=67.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC--------CccCCHHH-----------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM--------ARLFTPKI----------------------------- 83 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l--------~~~~d~~~----------------------------- 83 (356)
+|+|||+|+.|+-+|..|++. .+|+++|+.+.+. ...+.+..
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 689999999999999999999 9999999876321 00011100
Q ss_pred ----------------HHHHHHH---HHhCCCEEEeCCeeeEEEEcCCCcEEEEEe-CCCc--EEecCeEEEecCCCCCc
Q 018416 84 ----------------ASYYEEY---YKSKGVKFVKGTVLSSFDVDSNGKVVAVNL-RDGN--RLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 84 ----------------~~~~~~~---l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~-~~g~--~i~~D~vi~a~G~~p~~ 141 (356)
...+.+. ..+.||+++.++.+++++.++++ ..+.+ .+|+ ++.+|.||.|.|.....
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~--~~v~~~~~g~~~~i~a~~vV~AdG~~S~v 159 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG--YHVIFRADGWEQHITARYLVGADGANSMV 159 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE--EEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence 1111122 23468999999999999864444 23443 4664 68999999999986543
No 226
>PTZ00058 glutathione reductase; Provisional
Probab=97.85 E-value=0.00019 Score=73.42 Aligned_cols=97 Identities=27% Similarity=0.449 Sum_probs=66.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------------------------------c-cCCH-----
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------------------------R-LFTP----- 81 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------------------------------~-~~d~----- 81 (356)
.++|||+|+.|+.+|..+++.|.+|.+||+.. +.. . .+|.
T Consensus 50 DvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~-~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~~~~~~ 128 (561)
T PTZ00058 50 DLIVIGGGSGGMAAARRAARNKAKVALVEKDY-LGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNLPLLVE 128 (561)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEeccc-ccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCHHHHHH
Confidence 69999999999999999999999999999752 100 0 0111
Q ss_pred -------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcE-------------------EEE------EeCCCcEEecC
Q 018416 82 -------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKV-------------------VAV------NLRDGNRLPTD 129 (356)
Q Consensus 82 -------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v-------------------~~v------~~~~g~~i~~D 129 (356)
.+.+.+.+.+++.||+++.+.. ++. +++.+ ..+ ..++|+++.+|
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~gv~~~~G~a--~f~--~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~ad 204 (561)
T PTZ00058 129 RRDKYIRRLNDIYRQNLKKDNVEYFEGKG--SLL--SENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGK 204 (561)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcEEEEEEE--EEe--cCCEEEeeccccccccccccccccceeeeccceecCCCcEEECC
Confidence 1123344567778999998764 111 11111 123 23567889999
Q ss_pred eEEEecCCCCCch
Q 018416 130 MVVVGIGIRPNTS 142 (356)
Q Consensus 130 ~vi~a~G~~p~~~ 142 (356)
.+|+|||.+|...
T Consensus 205 ~lVIATGS~P~~P 217 (561)
T PTZ00058 205 NILIAVGNKPIFP 217 (561)
T ss_pred EEEEecCCCCCCC
Confidence 9999999998654
No 227
>PLN02546 glutathione reductase
Probab=97.85 E-value=9.9e-05 Score=75.47 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=64.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEee----------CC--------------ccC------C------c-------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFP----------EA--------------HCM------A------R------- 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~----------~~--------------~~l------~------~------- 77 (356)
.++|||+|+.|+++|..++++|++|+|+|+ +. .++ . .
T Consensus 81 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~~~~ 160 (558)
T PLN02546 81 DLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWKYET 160 (558)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcccCC
Confidence 599999999999999999999999999995 11 000 0 0
Q ss_pred --cCC------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 78 --LFT------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 78 --~~d------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
.+| .++...+.+.|++.||+++.+. .+.+. .. .++. +|+++.+|.+|+|+|.+|...
T Consensus 161 ~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~-a~~vd---~~---~V~v-~G~~~~~D~LVIATGs~p~~P 231 (558)
T PLN02546 161 EPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGR-GKIVD---PH---TVDV-DGKLYTARNILIAVGGRPFIP 231 (558)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEcc---CC---EEEE-CCEEEECCEEEEeCCCCCCCC
Confidence 011 0122334556778899999763 33342 22 2333 577899999999999998654
No 228
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.84 E-value=0.0002 Score=71.97 Aligned_cols=101 Identities=20% Similarity=0.218 Sum_probs=63.9
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEee------CCccC---------Cc------------------c--C-----
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFP------EAHCM---------AR------------------L--F----- 79 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~------~~~~l---------~~------------------~--~----- 79 (356)
-.++|||+|+.|+.+|..+++.|.+|.++++ ...+. |. . +
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~~ 84 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDGV 84 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCCC
Confidence 3699999999999999999999999999997 11110 00 0 0
Q ss_pred --CH------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416 80 --TP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 80 --d~------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 141 (356)
+. .+.+.+++.++..||+++.+.. ..+...+++....+...+++++++|.+|+|+|.+|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~ 159 (475)
T PRK06327 85 KIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRG-SFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRH 159 (475)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCC
Confidence 00 0011223345567888886643 3333222233223332345689999999999999863
No 229
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=97.81 E-value=0.00029 Score=68.15 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
-+|+|||||.+|+-+|..|+++|.+|+|++++.
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 469999999999999999999999999999864
No 230
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.80 E-value=1.3e-05 Score=70.69 Aligned_cols=62 Identities=23% Similarity=0.257 Sum_probs=41.8
Q ss_pred CCccCCCCC-CCCCCeEEeCCHHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416 4 KLEEFGLSG-SDAENVCYLRDLADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73 (356)
Q Consensus 4 ~p~~~~ipG-~~~~~v~~l~~~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~ 73 (356)
.|+.+++|| .+. .+++.....+.. ..++|+|+|||+|.+|+++|..|.+.|.+||++.|++.
T Consensus 139 ~p~~p~~~g~~~~-~~~h~~~~~~~~-------~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 139 HPRIPDIPGSAFR-PIIHSADWRDPE-------DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp SB---S-TTGGCS-EEEEGGG-STTG-------GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred CCCcccccccccc-ceEehhhcCChh-------hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 688889999 544 455444333332 23689999999999999999999999999999999875
No 231
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.78 E-value=0.00016 Score=72.39 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=30.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.++|||+|+.|+.+|..++++|.+|+|+++.
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 47999999999999999999999999999975
No 232
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.77 E-value=0.00037 Score=68.47 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=31.1
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
++|+|||||.+|+-+|..|++.|.+|+++|+++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999999999999999875
No 233
>PLN02507 glutathione reductase
Probab=97.77 E-value=0.00036 Score=70.60 Aligned_cols=97 Identities=22% Similarity=0.300 Sum_probs=64.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeC---------CccCCc----------c-----------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPE---------AHCMAR----------L----------------------- 78 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~---------~~~l~~----------~----------------------- 78 (356)
.++|||+|+.|+.+|..++++|.+|.++|+. ..+... .
T Consensus 27 DvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~~~~~ 106 (499)
T PLN02507 27 DLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGWEINE 106 (499)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 5999999999999999999999999999951 111000 0
Q ss_pred ---CC-HH-----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCc
Q 018416 79 ---FT-PK-----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 79 ---~d-~~-----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~ 141 (356)
+| .+ +...+++.+++.||+++.+ .+..+. ... ..+++.+|+ ++.+|.+|+|+|.+|..
T Consensus 107 ~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd---~~~-v~V~~~~g~~~~~~~d~LIIATGs~p~~ 181 (499)
T PLN02507 107 KVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVG---PNE-VEVTQLDGTKLRYTAKHILIATGSRAQR 181 (499)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEec---CCE-EEEEeCCCcEEEEEcCEEEEecCCCCCC
Confidence 00 00 0111223456678998876 333442 222 356667775 58899999999998865
Q ss_pred h
Q 018416 142 S 142 (356)
Q Consensus 142 ~ 142 (356)
.
T Consensus 182 p 182 (499)
T PLN02507 182 P 182 (499)
T ss_pred C
Confidence 4
No 234
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.76 E-value=0.00041 Score=68.08 Aligned_cols=100 Identities=17% Similarity=0.316 Sum_probs=65.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC------------c------c------------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------R------L------------------------ 78 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~------------~------~------------------------ 78 (356)
+|+|||||+.|+-+|..|++.|.+|.++|+.+.+.. . .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 699999999999999999999999999998743210 0 0
Q ss_pred --------CC-HHHHHHHHHHHHhCCCEEEeCCeeeEEEEc-CCCcEEEEEe--CC-----C--cEEecCeEEEecCCCC
Q 018416 79 --------FT-PKIASYYEEYYKSKGVKFVKGTVLSSFDVD-SNGKVVAVNL--RD-----G--NRLPTDMVVVGIGIRP 139 (356)
Q Consensus 79 --------~d-~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~-~~g~v~~v~~--~~-----g--~~i~~D~vi~a~G~~p 139 (356)
++ ..+-+.+.+...+.|++++.++ +.+++.. +.+....+++ .+ | .++.+++||.|.|..+
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S 160 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS 160 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence 00 0111234445567899998775 6666421 1122223332 21 3 4799999999999876
Q ss_pred Cc
Q 018416 140 NT 141 (356)
Q Consensus 140 ~~ 141 (356)
..
T Consensus 161 ~v 162 (398)
T TIGR02028 161 RV 162 (398)
T ss_pred HH
Confidence 43
No 235
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.75 E-value=0.00038 Score=59.13 Aligned_cols=93 Identities=22% Similarity=0.375 Sum_probs=61.5
Q ss_pred EEECCchHHHHHHHHHHHC-----CCcEEEEeeCCcc---------------------CCccCC---HH-----------
Q 018416 43 VVIGGGYIGMECAASLVIN-----KINVTMVFPEAHC---------------------MARLFT---PK----------- 82 (356)
Q Consensus 43 vVvGgG~iGlE~A~~L~~~-----G~~Vtlv~~~~~~---------------------l~~~~d---~~----------- 82 (356)
+|||+|+.|+-++..|.+. ..+|+|+++.+.- +...-+ ++
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~ 80 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRANGAD 80 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhcCcc
Confidence 5999999999999999987 4689999995321 000000 00
Q ss_pred ---------------HHHHHHHH----HH--hCCCEEE-eCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416 83 ---------------IASYYEEY----YK--SKGVKFV-KGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 137 (356)
Q Consensus 83 ---------------~~~~~~~~----l~--~~GV~v~-~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 137 (356)
..++++.. ++ ..||++. ...+|+.+...+++ ..+.+.+|..+.+|.||+|+|.
T Consensus 81 ~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 81 EAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDG--YRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCc--EEEEECCCCEEEeCEEEECCCC
Confidence 11222222 22 2355443 35588888875555 4677899999999999999995
No 236
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.75 E-value=0.00025 Score=74.22 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=31.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
.+|+|||||.+|+-+|..|+++|.+|+|+++..
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 489999999999999999999999999999864
No 237
>PRK14727 putative mercuric reductase; Provisional
Probab=97.74 E-value=0.00036 Score=70.21 Aligned_cols=99 Identities=18% Similarity=0.300 Sum_probs=65.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---------------------------C--c------cCCHHH
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------------------------A--R------LFTPKI 83 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---------------------------~--~------~~d~~~ 83 (356)
.-+++|||+|+.|+.+|..|++.|.+|+++++.+.+. + . .+|...
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 95 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSIDRGL 95 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCccCHHH
Confidence 4579999999999999999999999999999863210 0 0 011110
Q ss_pred --------HHH-----HHHHHHhC-CCEEEeCCeeeEEEEcCCCcEEEEEeCCCc--EEecCeEEEecCCCCCch
Q 018416 84 --------ASY-----YEEYYKSK-GVKFVKGTVLSSFDVDSNGKVVAVNLRDGN--RLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 84 --------~~~-----~~~~l~~~-GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~--~i~~D~vi~a~G~~p~~~ 142 (356)
... ..+.++.. ||+++.+.- .+. +++. ..+++.+|+ ++++|.+|+|+|.+|...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a--~f~--~~~~-v~v~~~~g~~~~~~~d~lViATGs~p~~p 165 (479)
T PRK14727 96 LLHQQQARVEELRHAKYQSILDGNPALTLLKGYA--RFK--DGNT-LVVRLHDGGERVLAADRCLIATGSTPTIP 165 (479)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEE--EEe--cCCE-EEEEeCCCceEEEEeCEEEEecCCCCCCC
Confidence 011 22233333 788887652 332 2232 346666764 699999999999988654
No 238
>PRK07121 hypothetical protein; Validated
Probab=97.73 E-value=0.00061 Score=68.76 Aligned_cols=61 Identities=25% Similarity=0.299 Sum_probs=42.7
Q ss_pred HHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-Cc--EEec-CeEEEecCC-CCCchhhhc
Q 018416 86 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGI-RPNTSLFEG 146 (356)
Q Consensus 86 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~vi~a~G~-~p~~~l~~~ 146 (356)
.+.+.+++.|+++++++.++++..+++|++..+...+ ++ .+.+ +.||+|+|- ..|.++.+.
T Consensus 182 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em~~~ 247 (492)
T PRK07121 182 PLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREMVAR 247 (492)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHHHHH
Confidence 3445556778999999999998764456777666532 32 4778 999999994 455555543
No 239
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.72 E-value=0.00058 Score=68.39 Aligned_cols=106 Identities=16% Similarity=0.243 Sum_probs=76.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-C--------------Cc------------------------cCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-M--------------AR------------------------LFT 80 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-l--------------~~------------------------~~d 80 (356)
-.|||||+|..|+-+|..+++.|.+|+|+|+.+.. . .. ..+
T Consensus 5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
T PRK08274 5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGRTD 84 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCCCC
Confidence 47999999999999999999999999999986521 0 00 001
Q ss_pred H----------------------------------------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCc
Q 018416 81 P----------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGK 114 (356)
Q Consensus 81 ~----------------------------------------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~ 114 (356)
+ .+...+.+.+++.|++++++++++++.. ++++
T Consensus 85 ~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~-~~g~ 163 (466)
T PRK08274 85 EALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALEL-DDGR 163 (466)
T ss_pred HHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe-cCCe
Confidence 1 1233444556678999999999999986 4677
Q ss_pred EEEEEeC--CC--cEEecCeEEEecC-CCCCchhhhc
Q 018416 115 VVAVNLR--DG--NRLPTDMVVVGIG-IRPNTSLFEG 146 (356)
Q Consensus 115 v~~v~~~--~g--~~i~~D~vi~a~G-~~p~~~l~~~ 146 (356)
+..+... ++ ..+.++.||+|+| +..|.+++..
T Consensus 164 v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n~~~~~~ 200 (466)
T PRK08274 164 FVGARAGSAAGGAERIRAKAVVLAAGGFESNREWLRE 200 (466)
T ss_pred EEEEEEEccCCceEEEECCEEEECCCCCCCCHHHHHh
Confidence 7666552 33 3588999999998 4556556553
No 240
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.71 E-value=7.6e-05 Score=72.84 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=54.0
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------cCCHH------HHHHHHHHHHhCCCEEEeCCeeeE
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------LFTPK------IASYYEEYYKSKGVKFVKGTVLSS 106 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------~~d~~------~~~~~~~~l~~~GV~v~~~~~v~~ 106 (356)
.++++|||||..|++.|..|+..|.+|+|+++.+.+..+ .|+.. ++-.+.+.-..-+|++++.++|++
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e 203 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE 203 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence 579999999999999999999999999999999887433 11111 112222333346899999999999
Q ss_pred EEE
Q 018416 107 FDV 109 (356)
Q Consensus 107 i~~ 109 (356)
+.+
T Consensus 204 v~G 206 (622)
T COG1148 204 VSG 206 (622)
T ss_pred ecc
Confidence 876
No 241
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.70 E-value=0.00037 Score=72.30 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
+..+|+|||||+.|+-+|..|++.|++|+|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45789999999999999999999999999999975
No 242
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=97.69 E-value=0.00049 Score=67.60 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
+|+|||||.+|+-+|..|++.|.+|+|+++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 68999999999999999999999999999974
No 243
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=97.69 E-value=0.00075 Score=66.23 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=38.5
Q ss_pred HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
+.+.++++|++++.+++|++++..+++.+..+++.+| ++.++.||+++|..
T Consensus 189 l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~ 239 (407)
T TIGR01373 189 YARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGH 239 (407)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChh
Confidence 3455577899999999999997534555556777776 69999998887743
No 244
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.68 E-value=0.00025 Score=70.83 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.++|||||+.|+.+|..|++.|.+|.++++.
T Consensus 5 DvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 5 DVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 6999999999999999999999999999983
No 245
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=97.67 E-value=0.00023 Score=68.65 Aligned_cols=103 Identities=23% Similarity=0.279 Sum_probs=74.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc-C---------CHHHHHHHHHHHHhC--CCEEEeCCeee
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL-F---------TPKIASYYEEYYKSK--GVKFVKGTVLS 105 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~-~---------d~~~~~~~~~~l~~~--GV~v~~~~~v~ 105 (356)
+.|+|||+|+|..|+.+...|-..-++|++|.+++.++-.. + -..+.+.+....++. +++++ .+.-+
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~-eAec~ 132 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYL-EAECT 132 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEE-ecccE
Confidence 56899999999999999999999999999999998764221 2 246777777777665 56655 44556
Q ss_pred EEEEcCCCcEE-EEEeCCC----cEEecCeEEEecCCCCCch
Q 018416 106 SFDVDSNGKVV-AVNLRDG----NRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 106 ~i~~~~~g~v~-~v~~~~g----~~i~~D~vi~a~G~~p~~~ 142 (356)
.+++ +...+. ...+.++ ..+.+|++++|+|..||+-
T Consensus 133 ~iDp-~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF 173 (491)
T KOG2495|consen 133 KIDP-DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF 173 (491)
T ss_pred eecc-cccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC
Confidence 6665 233222 1223344 4689999999999999874
No 246
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.67 E-value=0.00019 Score=73.38 Aligned_cols=103 Identities=17% Similarity=0.320 Sum_probs=80.1
Q ss_pred CCcEEEECCchHHHHHHHHHHHC---CCcEEEEeeCCcc------CCccCC-----HHHHHHHHHHHHhCCCEEEeCCee
Q 018416 39 GGNAVVIGGGYIGMECAASLVIN---KINVTMVFPEAHC------MARLFT-----PKIASYYEEYYKSKGVKFVKGTVL 104 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~---G~~Vtlv~~~~~~------l~~~~d-----~~~~~~~~~~l~~~GV~v~~~~~v 104 (356)
..++||||.|..|.-+.+.+.+. -.+||++...|++ +++.+. +++.-.-.++++++||+++++.++
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 46899999999999999999883 4579999776654 222222 234444567899999999999999
Q ss_pred eEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416 105 SSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 105 ~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
+.+.. +. ..|..++|.++.+|-+|+|+|..|......
T Consensus 83 ~~idr--~~--k~V~t~~g~~~~YDkLilATGS~pfi~PiP 119 (793)
T COG1251 83 IQIDR--AN--KVVTTDAGRTVSYDKLIIATGSYPFILPIP 119 (793)
T ss_pred EEecc--Cc--ceEEccCCcEeecceeEEecCccccccCCC
Confidence 99975 33 357778899999999999999998875543
No 247
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00025 Score=66.66 Aligned_cols=101 Identities=23% Similarity=0.326 Sum_probs=81.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC--CccC-----------CccCCHHHHHHHHHHHHhCCCEEEeCCee
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE--AHCM-----------ARLFTPKIASYYEEYYKSKGVKFVKGTVL 104 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~--~~~l-----------~~~~d~~~~~~~~~~l~~~GV~v~~~~~v 104 (356)
.+-.|+|||||+.|-..|-+.+|+|.+.-++..+ .+++ +..-.+.++..++++.++..|+++...+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra 289 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRA 289 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhhhhhh
Confidence 4557999999999999999999999987665321 2222 12246889999999999999999988888
Q ss_pred eEEEEc-CCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 105 SSFDVD-SNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 105 ~~i~~~-~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
+++++. ..+....+++.+|-.+.+..+|+++|.+
T Consensus 290 ~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 290 SKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 888763 3355778999999999999999999965
No 248
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.66 E-value=0.00057 Score=69.91 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=30.4
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.|+|||||.+|+-+|..|+++|.+|+|+|+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 47999999999999999999999999999986
No 249
>PLN02985 squalene monooxygenase
Probab=97.66 E-value=0.00059 Score=69.26 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
..+|+|||+|+.|+-+|..|++.|.+|+++|+.+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~ 76 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL 76 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence 4579999999999999999999999999999863
No 250
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.64 E-value=0.00051 Score=67.59 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCc--EEecCeEEEecCCCCC
Q 018416 82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGIRPN 140 (356)
Q Consensus 82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~~p~ 140 (356)
.+...+.+.++++||++++++.++++.. +++++..+... +|+ ++.++.||+|+|--..
T Consensus 142 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~-e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 142 ALIEALAKAAEEAGVDIRFNTRVTDLIT-EDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHTTEEEEESEEEEEEEE-ETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHhhcCeeeeccceeeeEEE-eCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 3566677888889999999999999987 57788887766 454 5789999999996555
No 251
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.59 E-value=0.001 Score=66.37 Aligned_cols=101 Identities=20% Similarity=0.305 Sum_probs=66.1
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC------------cc-CCH------------------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA------------RL-FTP------------------------ 81 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~------------~~-~d~------------------------ 81 (356)
.-+|+|||||+.|+-+|..|++.|.+|+++|+.+.... .+ +++
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 35799999999999999999999999999998743100 00 000
Q ss_pred --------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCC-CcEEEEEeC---------CCcEEecCeEEEecCC
Q 018416 82 --------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSN-GKVVAVNLR---------DGNRLPTDMVVVGIGI 137 (356)
Q Consensus 82 --------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~-g~v~~v~~~---------~g~~i~~D~vi~a~G~ 137 (356)
.+-+.+.+...+.|++++.+ .+++++..++ +....+.+. ++.++++|+||-|.|.
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~ 197 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGA 197 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCc
Confidence 11223444556679999865 4666653111 111234332 1357999999999997
Q ss_pred CCC
Q 018416 138 RPN 140 (356)
Q Consensus 138 ~p~ 140 (356)
...
T Consensus 198 ~S~ 200 (450)
T PLN00093 198 NSR 200 (450)
T ss_pred chH
Confidence 553
No 252
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00033 Score=65.49 Aligned_cols=125 Identities=20% Similarity=0.243 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcE--EecCeEEEecCCCCCchhh-------hc---
Q 018416 79 FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTSLF-------EG--- 146 (356)
Q Consensus 79 ~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~l~-------~~--- 146 (356)
+.-.+.+.+...+++.|.-++++.+|...+- .++++..+.+.+... +.+|..++|+|.-=...+. +.
T Consensus 256 lGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ 334 (421)
T COG3075 256 LGIRLHNQLQRQFEQLGGLWMPGDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFD 334 (421)
T ss_pred hhhhHHHHHHHHHHHcCceEecCCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhcchhh
Confidence 4556778888999999999999999999876 678888898887754 5689999999942111110 00
Q ss_pred -c-c------cc-----------ccCcEEEecccccC-----CCCEEEEccccccCccccCcccccccHHHHHHHHHHHH
Q 018416 147 -Q-L------TL-----------EKGGIKVTGRLQSS-----NSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAV 202 (356)
Q Consensus 147 -~-l------~~-----------~~g~I~vd~~l~ts-----~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa 202 (356)
. + .+ -.=++.+|+++|.+ .+|+||||-+.+.++++.-. -....|+..|-.|+
T Consensus 335 ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~eg----cGsGVaivta~~aa 410 (421)
T COG3075 335 LDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEG----CGSGVAIVTALHAA 410 (421)
T ss_pred cccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhc----CCcchHHHHHHHHH
Confidence 0 0 00 11257788888863 57999999999988764200 11234566777777
Q ss_pred HHHcCC
Q 018416 203 AAIMEP 208 (356)
Q Consensus 203 ~~i~g~ 208 (356)
+.|+.+
T Consensus 411 ~qi~~~ 416 (421)
T COG3075 411 EQIAER 416 (421)
T ss_pred HHHHHH
Confidence 777643
No 253
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.57 E-value=0.0009 Score=67.43 Aligned_cols=97 Identities=16% Similarity=0.220 Sum_probs=64.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC--------ccC---------C------------------c--------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA--------HCM---------A------------------R-------- 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~--------~~l---------~------------------~-------- 77 (356)
.++|||+|+.|+.+|..+++.|.+|+++++.. .+. | .
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~ 83 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVEET 83 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccCCC
Confidence 69999999999999999999999999999621 010 0 0
Q ss_pred -cCCH------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC--cEEecCeEEEecCCCCCch
Q 018416 78 -LFTP------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG--NRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 78 -~~d~------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g--~~i~~D~vi~a~G~~p~~~ 142 (356)
.+|- .+.+.....|++.||+++.+.- ++. ++.. ..+...+| +++++|.+|+|+|.+|...
T Consensus 84 ~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a--~f~--~~~~-v~v~~~~g~~~~~~~d~lVIATGs~p~~p 158 (484)
T TIGR01438 84 VKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYA--EFV--DKHR-IKATNKKGKEKIYSAERFLIATGERPRYP 158 (484)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEE--EEc--CCCE-EEEeccCCCceEEEeCEEEEecCCCCCCC
Confidence 0010 0122334457778999987643 332 2232 23333344 3699999999999998643
No 254
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.56 E-value=0.00092 Score=69.57 Aligned_cols=103 Identities=21% Similarity=0.354 Sum_probs=71.1
Q ss_pred CCcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCCccCCc----------------------------------cCC---
Q 018416 39 GGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMAR----------------------------------LFT--- 80 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~~~l~~----------------------------------~~d--- 80 (356)
.-+|+|||||+.|+-+|..|+++ |++|+|+++.+..... +.+
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~~ 111 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPDP 111 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCCC
Confidence 35899999999999999999995 9999999987432100 000
Q ss_pred -----------------------------HHHHHHHHHHHHhCC--CEEEeCCeeeEEEEcCCC-cEEEEEeC------C
Q 018416 81 -----------------------------PKIASYYEEYYKSKG--VKFVKGTVLSSFDVDSNG-KVVAVNLR------D 122 (356)
Q Consensus 81 -----------------------------~~~~~~~~~~l~~~G--V~v~~~~~v~~i~~~~~g-~v~~v~~~------~ 122 (356)
..+-+.+.+.+.+.| +++..++++++++.++++ .-+.+++. +
T Consensus 112 ~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~ 191 (634)
T PRK08294 112 ADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHE 191 (634)
T ss_pred ccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCC
Confidence 012333445565655 578889999999764322 22334453 3
Q ss_pred C--cEEecCeEEEecCCCCCc
Q 018416 123 G--NRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 123 g--~~i~~D~vi~a~G~~p~~ 141 (356)
| +++.+|+||-|-|.+...
T Consensus 192 g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 192 GEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred CceEEEEeCEEEECCCCchHH
Confidence 5 579999999999987544
No 255
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.52 E-value=0.00084 Score=67.19 Aligned_cols=32 Identities=19% Similarity=0.493 Sum_probs=29.8
Q ss_pred CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~ 71 (356)
..|+|||||++|+-+|..|++. |.+|+|+|+.
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 4799999999999999999998 8999999975
No 256
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.52 E-value=0.0012 Score=66.16 Aligned_cols=97 Identities=27% Similarity=0.397 Sum_probs=67.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC--------------c----------------cCC---------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA--------------R----------------LFT--------- 80 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~--------------~----------------~~d--------- 80 (356)
..|+|||+|..|+-+|..+++.|.+|+|+++.+.... . ..|
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4799999999999999999999999999988532100 0 001
Q ss_pred --------------------------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC
Q 018416 81 --------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD 122 (356)
Q Consensus 81 --------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~ 122 (356)
..+.+.+.+.+++.||+++.+ .++.+.. +++.+..+.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~-~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRG-FAEELAI-KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEe-EeEEEEe-eCCEEEEEEE-C
Confidence 123334445556677887765 6666654 4566655655 5
Q ss_pred CcEEecCeEEEecCCCC
Q 018416 123 GNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 123 g~~i~~D~vi~a~G~~p 139 (356)
++.+.++.||+|+|..+
T Consensus 159 g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 159 GELLKFDATVIATGGFS 175 (466)
T ss_pred CEEEEeCeEEECCCcCc
Confidence 66899999999999643
No 257
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=97.51 E-value=0.0012 Score=63.61 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=29.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
+|+|||+|.+|+-+|..|++.|.+|+|+++.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999999999999999999999985
No 258
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.51 E-value=0.0015 Score=67.94 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=31.0
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.-.|+|||||.+|+-+|..|+++|.+|+|+|+.
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 357999999999999999999999999999996
No 259
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.48 E-value=0.0002 Score=73.36 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=83.0
Q ss_pred CCCcEEEECCchHHHHHHHH-------HHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEc
Q 018416 38 SGGNAVVIGGGYIGMECAAS-------LVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 110 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~-------L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 110 (356)
.++.++++|++++++|++.. +.+.|.+|+++...+..+.. ++..+...+.+.+++.||++++++.++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~- 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLG-MGQALAAGLRIGLQRAGVPVLLNTPLTDLYV- 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCccc-CcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE-
Confidence 46778999999999999875 77788888887766555444 6788888999999999999999999999986
Q ss_pred CCCcEEEEEeC-CCc--EEecC-eEEEecC-CCCCchhhhc
Q 018416 111 SNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFEG 146 (356)
Q Consensus 111 ~~g~v~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~l~~~ 146 (356)
+++++..+... +++ .+.++ .||+|+| +.+|.++.+.
T Consensus 237 ~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~ 277 (557)
T PRK07843 237 EDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAK 277 (557)
T ss_pred eCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHH
Confidence 46677666553 443 47785 6888765 7777766553
No 260
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.47 E-value=0.0018 Score=64.70 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=53.3
Q ss_pred CCCEEEeCCeeeEEEEcCCCcEEEEEeC-----------CC--cEEecCeEEEecCCCCCc--hh-hhcccccccCcEEE
Q 018416 94 KGVKFVKGTVLSSFDVDSNGKVVAVNLR-----------DG--NRLPTDMVVVGIGIRPNT--SL-FEGQLTLEKGGIKV 157 (356)
Q Consensus 94 ~GV~v~~~~~v~~i~~~~~g~v~~v~~~-----------~g--~~i~~D~vi~a~G~~p~~--~l-~~~~l~~~~g~I~v 157 (356)
+-+.+++..++.+|.+ +++++..+++. .| ++++||+|+-|+|++... .+ ++..+...+|.+.
T Consensus 324 r~i~l~F~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~g~pFd~~~~n~~grv~- 401 (506)
T PTZ00188 324 KIIEFIFYFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFAENLYNQSVQMFKEDIG- 401 (506)
T ss_pred eEEEEEccCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCCCCCCccccCCCCCCccc-
Confidence 3467788888888875 34677777665 23 369999999999987543 11 1111222222222
Q ss_pred ecccccCCCCEEEEccccccCccccC
Q 018416 158 TGRLQSSNSSVYAVGDVAAFPLKLLG 183 (356)
Q Consensus 158 d~~l~ts~~~VyAiGD~~~~~~~~~g 183 (356)
+..|++|++|.+-..|.-+.|
T Consensus 402 -----~~~~g~Y~~GWiKrGP~GvIg 422 (506)
T PTZ00188 402 -----QHKFAIFKAGWFDKGPKGNIA 422 (506)
T ss_pred -----CCCCCcEEeeecCcCCCceec
Confidence 136999999999988765433
No 261
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.45 E-value=0.0017 Score=66.39 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=71.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------------c---------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------------R--------------------------- 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------------~--------------------------- 77 (356)
-.|+|||+|..|+-+|..+++.|.+|+|+++.+.... .
T Consensus 17 ~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~~ 96 (541)
T PRK07804 17 ADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSLV 96 (541)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4799999999999999999999999999988642200 0
Q ss_pred ---------------cC-----------------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC
Q 018416 78 ---------------LF-----------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG 113 (356)
Q Consensus 78 ---------------~~-----------------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g 113 (356)
.| ...+...+.+.+++.||+++.++.++++..+++|
T Consensus 97 ~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g 176 (541)
T PRK07804 97 AEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGTG 176 (541)
T ss_pred HHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCC
Confidence 00 1123344555566678899999999998764456
Q ss_pred cEEEEEeC-------CC-cEEecCeEEEecCCC
Q 018416 114 KVVAVNLR-------DG-NRLPTDMVVVGIGIR 138 (356)
Q Consensus 114 ~v~~v~~~-------~g-~~i~~D~vi~a~G~~ 138 (356)
++..+... ++ ..+.++.||+|+|-.
T Consensus 177 ~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 177 AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred eEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 66665542 22 368999999999953
No 262
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.41 E-value=0.00047 Score=69.72 Aligned_cols=31 Identities=32% Similarity=0.335 Sum_probs=29.4
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEee
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFP 70 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~ 70 (356)
-.++|||+|+.|+.+|..++++|.+|+|+++
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3799999999999999999999999999995
No 263
>PRK07846 mycothione reductase; Reviewed
Probab=97.40 E-value=0.00046 Score=68.88 Aligned_cols=93 Identities=17% Similarity=0.256 Sum_probs=58.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc--------cCCc--------------------------cCCH-HHH-
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAH--------CMAR--------------------------LFTP-KIA- 84 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~--------~l~~--------------------------~~d~-~~~- 84 (356)
.++|||+|+.|..+|.. ..|.+|.++|+..- +.|. .+|- ++.
T Consensus 3 D~vVIG~G~~g~~aa~~--~~G~~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 80 (451)
T PRK07846 3 DLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWPDIVS 80 (451)
T ss_pred CEEEECCCHHHHHHHHH--HCCCeEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHHHHHH
Confidence 58999999999987754 56999999997520 0000 0010 011
Q ss_pred ------HHH-----HHH-HHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 85 ------SYY-----EEY-YKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 85 ------~~~-----~~~-l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+.+ ... +++.||+++.+.... + ++. .|++.+|+++.+|.+|+|||.+|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~-~---~~~---~V~v~~g~~~~~d~lViATGs~p~~p 143 (451)
T PRK07846 81 RVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARF-I---GPK---TLRTGDGEEITADQVVIAAGSRPVIP 143 (451)
T ss_pred HHHHHHHHHhccchhhhhhhhCCcEEEEEEEEE-e---cCC---EEEECCCCEEEeCEEEEcCCCCCCCC
Confidence 111 112 556678888764321 2 222 45667788899999999999998654
No 264
>PRK08275 putative oxidoreductase; Provisional
Probab=97.39 E-value=0.0025 Score=65.35 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=71.7
Q ss_pred CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCc---------------------------------cCCH---
Q 018416 40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR---------------------------------LFTP--- 81 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~---------------------------------~~d~--- 81 (356)
-.|+|||+|..|+-+|..+++. |.+|+|+++.+..... ..++
T Consensus 10 ~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~~~v 89 (554)
T PRK08275 10 TDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQKAV 89 (554)
T ss_pred cCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccHHHH
Confidence 3699999999999999999987 6899999987531000 0011
Q ss_pred ------------------------------------------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC
Q 018416 82 ------------------------------------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG 113 (356)
Q Consensus 82 ------------------------------------------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g 113 (356)
.+.+.+.+.+++.||+++.++.++++..++++
T Consensus 90 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g 169 (554)
T PRK08275 90 YAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDADG 169 (554)
T ss_pred HHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCC
Confidence 23344555566789999999999999764366
Q ss_pred cEEEEEe---CCCc--EEecCeEEEecCCCC
Q 018416 114 KVVAVNL---RDGN--RLPTDMVVVGIGIRP 139 (356)
Q Consensus 114 ~v~~v~~---~~g~--~i~~D~vi~a~G~~p 139 (356)
++..+.. .+|+ .+.++.||+|+|...
T Consensus 170 ~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 170 RVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred eEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 6665542 3554 478999999999643
No 265
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.38 E-value=0.0024 Score=65.59 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 38999999999999999999999999998764
No 266
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.38 E-value=0.00078 Score=61.48 Aligned_cols=93 Identities=19% Similarity=0.262 Sum_probs=63.9
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc----------------cC---CH--------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR----------------LF---TP-------------------- 81 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~----------------~~---d~-------------------- 81 (356)
+++|||+|..|+-+|..|+..|.+||+++++.-+..+ +| ++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceeeccc
Confidence 6999999999999999999999999999998322111 00 11
Q ss_pred -----------------------HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEecCeEEEecCC
Q 018416 82 -----------------------KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPTDMVVVGIGI 137 (356)
Q Consensus 82 -----------------------~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~D~vi~a~G~ 137 (356)
.|+... +.| ....++.++++|+++...+++ =.+..++| +...+|.|++++..
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsala-k~L-AtdL~V~~~~rVt~v~~~~~~--W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALA-KFL-ATDLTVVLETRVTEVARTDND--WTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred cccccccCCCCCCCCCCccccCcchHHHH-HHH-hccchhhhhhhhhhheecCCe--eEEEecCCCcccccceEEEecCC
Confidence 122222 222 224567788899988764333 34666555 56789999999875
No 267
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.36 E-value=0.0003 Score=51.08 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=30.3
Q ss_pred EECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416 44 VIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77 (356)
Q Consensus 44 VvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~ 77 (356)
|||+|..|+.+|..|++.|.+|+|+|+.+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~ 34 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGR 34 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcc
Confidence 8999999999999999999999999999886543
No 268
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.34 E-value=0.0027 Score=63.02 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=43.8
Q ss_pred HHHHHHHhCCCEEEeCCeeeEEEEcC-CCcEEEEEeCC-CcEEecCeEEEecC-CCCCchhhhc
Q 018416 86 YYEEYYKSKGVKFVKGTVLSSFDVDS-NGKVVAVNLRD-GNRLPTDMVVVGIG-IRPNTSLFEG 146 (356)
Q Consensus 86 ~~~~~l~~~GV~v~~~~~v~~i~~~~-~g~v~~v~~~~-g~~i~~D~vi~a~G-~~p~~~l~~~ 146 (356)
.+.+.+++.|+++++++.++++..++ ++.+..+...+ +..+.++.||+|+| +..|.++...
T Consensus 128 ~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 128 ALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 34445667789999999999987643 56666665543 35799999999999 5556666543
No 269
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.0021 Score=63.31 Aligned_cols=102 Identities=20% Similarity=0.261 Sum_probs=65.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCC---CcEEEEeeCCccCCc---------------------c-----------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINK---INVTMVFPEAHCMAR---------------------L----------------- 78 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G---~~Vtlv~~~~~~l~~---------------------~----------------- 78 (356)
.+|+|||+|+.|+.+|..|.+.- ..|+++++.+++... +
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 47999999999999999998751 139999988554211 0
Q ss_pred --------------------CCHHHHHHHHHHHHhCC---CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416 79 --------------------FTPKIASYYEEYYKSKG---VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 135 (356)
Q Consensus 79 --------------------~d~~~~~~~~~~l~~~G---V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~ 135 (356)
|...+.+.+...+++.- |.++ .++.+.+...+++....+...+|....+|.+|++|
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~-~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlat 160 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTI-REEATSVRQDTNAGGYLVTTADGPSEIADIIVLAT 160 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEE-eeeeecceeccCCceEEEecCCCCeeeeeEEEEec
Confidence 01112223333333322 4444 33444554434555566777899999999999999
Q ss_pred CCCCCch
Q 018416 136 GIRPNTS 142 (356)
Q Consensus 136 G~~p~~~ 142 (356)
|..+...
T Consensus 161 gh~~~~~ 167 (474)
T COG4529 161 GHSAPPA 167 (474)
T ss_pred cCCCCCc
Confidence 9765543
No 270
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.32 E-value=0.0019 Score=64.25 Aligned_cols=98 Identities=23% Similarity=0.313 Sum_probs=66.1
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc------------------------------------cCCH-H
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR------------------------------------LFTP-K 82 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~------------------------------------~~d~-~ 82 (356)
-.++|||+|+.|.-+|..+++.|.+|.++++.+.+... .+|- +
T Consensus 5 yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~id~~~ 84 (454)
T COG1249 5 YDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKIDFEK 84 (454)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCCcCHHH
Confidence 36999999999999999999999999999998532100 0111 0
Q ss_pred -----------HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 83 -----------IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 83 -----------~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
....++..++++||+++.+.- ++. +++.+ .|...+.+++++|.+|+|||.+|...
T Consensus 85 ~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a--~f~--~~~~v-~V~~~~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 85 LLARKDKVVRLLTGGVEGLLKKNGVDVIRGEA--RFV--DPHTV-EVTGEDKETITADNIIIATGSRPRIP 150 (454)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEE--EEC--CCCEE-EEcCCCceEEEeCEEEEcCCCCCcCC
Confidence 112234455667999987753 343 23322 23222247899999999999999754
No 271
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00023 Score=70.88 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=50.6
Q ss_pred CCccCCCCCCCCCCeEEeCC--HHHHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416 4 KLEEFGLSGSDAENVCYLRD--LADANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75 (356)
Q Consensus 4 ~p~~~~ipG~~~~~v~~l~~--~~da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l 75 (356)
.|+.+.|+|.+.-+.-.+++ ..+.+. ..+|+|+|||+|.+|+++|..|.+.|.+||++.|++...
T Consensus 145 ~P~iP~~~G~~~f~g~~~HS~~~~~~~~-------~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 145 EPYIPDFAGLDEFKGRILHSADWPNPED-------LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred CCCCCCCCCccCCCceEEchhcCCCccc-------cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 58889999987543333333 223322 379999999999999999999999999999999987643
No 272
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.31 E-value=0.0042 Score=63.18 Aligned_cols=54 Identities=28% Similarity=0.427 Sum_probs=40.9
Q ss_pred HHHHHHHHhCCCEEEeCCeeeEEEEc-CC--CcEEEEEeC-CCc-----EEecCeEEEecCCC
Q 018416 85 SYYEEYYKSKGVKFVKGTVLSSFDVD-SN--GKVVAVNLR-DGN-----RLPTDMVVVGIGIR 138 (356)
Q Consensus 85 ~~~~~~l~~~GV~v~~~~~v~~i~~~-~~--g~v~~v~~~-~g~-----~i~~D~vi~a~G~~ 138 (356)
..+.+.|+++||+|+++++|+++..+ ++ +++..++.. +|+ ..+.|.||+++|.-
T Consensus 230 ~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~ 292 (576)
T PRK13977 230 LPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSI 292 (576)
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcC
Confidence 44677889999999999999999863 23 567777764 332 35789999999953
No 273
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.31 E-value=0.0035 Score=63.26 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHHHHHHHHh----CC--CEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 84 ASYYEEYYKS----KG--VKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 84 ~~~~~~~l~~----~G--V~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
...+.+.+++ +| ++++++++|++++.. ++....|++.+| ++.+|.||+|+|...
T Consensus 214 ~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 214 SESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCC-EEEeCEEEECcChhH
Confidence 3344556666 67 888999999999863 244455777666 699999999999543
No 274
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.30 E-value=0.0037 Score=62.09 Aligned_cols=55 Identities=11% Similarity=0.219 Sum_probs=38.4
Q ss_pred HHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCcEEEEE-eCCCc--EEecCeEEEecCCC
Q 018416 83 IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGKVVAVN-LRDGN--RLPTDMVVVGIGIR 138 (356)
Q Consensus 83 ~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~v~~v~-~~~g~--~i~~D~vi~a~G~~ 138 (356)
+.+.+.+.+++ .||++++++.++++.. +++++..+. ..+++ .+.++.||+|+|--
T Consensus 130 l~~~L~~~~~~~~gV~i~~~t~v~~Li~-~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIENCYLVDIIE-NDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHhcCCCEEEECcEeeeeEe-cCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 33444555554 5999999999999875 456665543 33454 58999999999953
No 275
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.30 E-value=0.0031 Score=59.33 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCEEEeCCeeeEEEE-cCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 85 SYYEEYYKSKGVKFVKGTVLSSFDV-DSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 85 ~~~~~~l~~~GV~v~~~~~v~~i~~-~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
..++..+++.|+.++.+..++.++- ++++..+.|.+++|..+.++.+|+++|.-
T Consensus 157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred HHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 4456778889999999999888752 34566678999999999999999999943
No 276
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.30 E-value=0.0025 Score=64.65 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.|+|||||.+|+-+|..|+++|.+|+|+|+.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 47999999999999999999999999999986
No 277
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.28 E-value=0.0035 Score=64.87 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=29.1
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 42 AVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6899999999999999999999999999875
No 278
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0023 Score=56.86 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=72.9
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC--------------------CccCCccCCHHHHHHHHHHHHhCCCEE
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE--------------------AHCMARLFTPKIASYYEEYYKSKGVKF 98 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~--------------------~~~l~~~~d~~~~~~~~~~l~~~GV~v 98 (356)
..+|+|||+|+.+.-.|..+++.-.+-.+++-. |-+-.....+++.+.+++.-++.|-++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~i 87 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTEI 87 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhccee
Confidence 358999999999999999999987776666542 222223357899999999999999999
Q ss_pred EeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCc
Q 018416 99 VKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 99 ~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~ 141 (356)
++++ |.+++. .+....+. +|.+.+.+|.||+++|.....
T Consensus 88 ~tEt-Vskv~~--sskpF~l~-td~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 88 ITET-VSKVDL--SSKPFKLW-TDARPVTADAVILATGASAKR 126 (322)
T ss_pred eeee-hhhccc--cCCCeEEE-ecCCceeeeeEEEecccceee
Confidence 9764 556643 22223343 466789999999999976543
No 279
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.27 E-value=0.00043 Score=71.26 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=80.5
Q ss_pred CCCcEEEECCch--HHHHHHHHHHHCCCcEEEEeeCCccCCccCC--------------HHHHHHHHHHHHhCCCEEEeC
Q 018416 38 SGGNAVVIGGGY--IGMECAASLVINKINVTMVFPEAHCMARLFT--------------PKIASYYEEYYKSKGVKFVKG 101 (356)
Q Consensus 38 ~~~~vvVvGgG~--iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d--------------~~~~~~~~~~l~~~GV~v~~~ 101 (356)
.++++.|+|+|+ ++.|++..+...+.+++++.+.+.+++. ++ ..+.+.+.+.+++.||+++++
T Consensus 156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~~ 234 (574)
T PRK12842 156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATH-LKDLALYRRGTQVTSGNALAARLAKSALDLGIPILTG 234 (574)
T ss_pred CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhh-HHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEeC
Confidence 467899999999 9999999999999999988777666543 22 457777888889999999999
Q ss_pred CeeeEEEEcCCCcEEEEEeCC--Cc-EEecC-eEEEecCCCCCc
Q 018416 102 TVLSSFDVDSNGKVVAVNLRD--GN-RLPTD-MVVVGIGIRPNT 141 (356)
Q Consensus 102 ~~v~~i~~~~~g~v~~v~~~~--g~-~i~~D-~vi~a~G~~p~~ 141 (356)
+.++++.. +++++..+...+ ++ .+.++ .||+|+|..++.
T Consensus 235 ~~v~~l~~-~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 235 TPARELLT-EGGRVVGARVIDAGGERRITARRGVVLACGGFSHD 277 (574)
T ss_pred CEEEEEEe-eCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccch
Confidence 99999986 467776666543 33 47786 799999977644
No 280
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.26 E-value=0.0023 Score=64.48 Aligned_cols=31 Identities=29% Similarity=0.263 Sum_probs=29.0
Q ss_pred CcEEEECCchHHHHHHHHHHHC-CCcEEEEee
Q 018416 40 GNAVVIGGGYIGMECAASLVIN-KINVTMVFP 70 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~ 70 (356)
-.++|||+|+.|..+|..++++ |.+|.+|++
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 3699999999999999999997 999999996
No 281
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.23 E-value=0.004 Score=62.81 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=69.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC-------------------------------ccCC---------
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA-------------------------------RLFT--------- 80 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~-------------------------------~~~d--------- 80 (356)
.|+|||+|..|+-+|..+++.|. |+|+++.+.... ...|
T Consensus 4 DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 82 (488)
T TIGR00551 4 DVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFVVS 82 (488)
T ss_pred cEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 69999999999999999999997 999988732100 0001
Q ss_pred ---------------------------------------------HHHHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCCc
Q 018416 81 ---------------------------------------------PKIASYYEEYYKS-KGVKFVKGTVLSSFDVDSNGK 114 (356)
Q Consensus 81 ---------------------------------------------~~~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g~ 114 (356)
..+...+.+.+++ .||+++.++.++++.. +++.
T Consensus 83 ~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-~~g~ 161 (488)
T TIGR00551 83 DARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLI-ETGR 161 (488)
T ss_pred hHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeec-cCCE
Confidence 1233444555555 5899999999999876 4566
Q ss_pred EEEEEeCC-C--cEEecCeEEEecCCCC
Q 018416 115 VVAVNLRD-G--NRLPTDMVVVGIGIRP 139 (356)
Q Consensus 115 v~~v~~~~-g--~~i~~D~vi~a~G~~p 139 (356)
+..+...+ + ..+.++.||+|+|...
T Consensus 162 v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 162 VVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred EEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 65554433 3 3689999999999654
No 282
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.23 E-value=0.0049 Score=64.27 Aligned_cols=47 Identities=26% Similarity=0.326 Sum_probs=36.0
Q ss_pred HHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC---CCc--EEecCeEEEecCC
Q 018416 90 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR---DGN--RLPTDMVVVGIGI 137 (356)
Q Consensus 90 ~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~---~g~--~i~~D~vi~a~G~ 137 (356)
.+++.||+++.++.++++.. +++++..+... +|+ .+.++.||+|+|-
T Consensus 179 ~~~~~gV~i~~~t~v~~Li~-d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 179 QIAAGTVKMYTRTEMLDLVV-VDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHhcCCEEEeceEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 45567899999999999875 45777766653 453 5899999999995
No 283
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.23 E-value=0.0049 Score=63.92 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=30.3
Q ss_pred CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~ 72 (356)
-.|+|||+|..|+-+|..+++. |.+|.|+++.+
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~ 46 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN 46 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 3799999999999999999998 99999999864
No 284
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.22 E-value=0.0048 Score=63.89 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCc--EEecCeEEEecCC
Q 018416 86 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI 137 (356)
Q Consensus 86 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~ 137 (356)
.+.+.+++.||++++++.++++..+++|++..+.. .+|+ .+.++.||+|+|-
T Consensus 154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 34444556789999999999987644477777653 3564 5889999999994
No 285
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.21 E-value=0.0048 Score=63.12 Aligned_cols=98 Identities=19% Similarity=0.256 Sum_probs=69.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------------------------------cCC-------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------------LFT------- 80 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------------------------------~~d------- 80 (356)
-.|+|||+|..|+-+|..+ +.|.+|+|+++.+..... ..|
T Consensus 8 ~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~lv~~~ 86 (543)
T PRK06263 8 TDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVEIL 86 (543)
T ss_pred cCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4799999999999999999 889999999986421000 001
Q ss_pred -----------------------------------------------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC
Q 018416 81 -----------------------------------------------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG 113 (356)
Q Consensus 81 -----------------------------------------------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g 113 (356)
.++...+.+.+++.||++++++.++++..++++
T Consensus 87 ~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~ 166 (543)
T PRK06263 87 VKEAPKRLKDLEKFGALFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDENR 166 (543)
T ss_pred HHHHHHHHHHHHHcCCcceeCCCCceeecccCCeEcCeEEECCCCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCc
Confidence 122333444556678999999999998764444
Q ss_pred cEEEEEe---CCCc--EEecCeEEEecCCC
Q 018416 114 KVVAVNL---RDGN--RLPTDMVVVGIGIR 138 (356)
Q Consensus 114 ~v~~v~~---~~g~--~i~~D~vi~a~G~~ 138 (356)
++..+.. .+|+ .+.++.||+|+|--
T Consensus 167 ~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 167 EVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred EEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 4665543 4554 58899999999953
No 286
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.18 E-value=0.0014 Score=65.44 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=57.9
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC---------C------------------c--------cCC-HH--
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM---------A------------------R--------LFT-PK-- 82 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l---------~------------------~--------~~d-~~-- 82 (356)
.++|||+|+.|..+|. +..|.+|.+||+.. +. | + .+| +.
T Consensus 4 D~vvIG~G~~g~~aa~--~~~g~~V~lie~~~-~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 80 (452)
T TIGR03452 4 DLIIIGTGSGNSIPDP--RFADKRIAIVEKGT-FGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDIV 80 (452)
T ss_pred CEEEECCCHHHHHHHH--HHCCCeEEEEeCCC-CCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCHHHHH
Confidence 6899999999988754 45799999999852 10 0 0 011 00
Q ss_pred ------HHHHHH----HH-H--HhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 83 ------IASYYE----EY-Y--KSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 83 ------~~~~~~----~~-l--~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
..+.+. +. + ++.||+++.++.. +. ++ ..|.+.+|+++.+|.+|+|||.+|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~--~~--~~---~~V~~~~g~~~~~d~lIiATGs~p~~p 146 (452)
T TIGR03452 81 SRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHAR--FV--GP---RTLRTGDGEEITGDQIVIAAGSRPYIP 146 (452)
T ss_pred HHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEE--Ee--cC---CEEEECCCcEEEeCEEEEEECCCCCCC
Confidence 111111 11 1 2268888877643 22 12 235566788899999999999998643
No 287
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.18 E-value=0.0055 Score=63.63 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=30.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 30 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 30 YDAVVVGAGGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred cCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence 36999999999999999999999999999886
No 288
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.18 E-value=0.0019 Score=64.27 Aligned_cols=83 Identities=20% Similarity=0.222 Sum_probs=60.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+|+++|+|+|.+|+.+|..|++.|++|+++++.+. +.+ +...+.|.+.|++++.+....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~-~~~~~~l~~~~~~~~~~~~~~~----------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQL-KEALEELGELGIELVLGEYPEE----------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHH-HHHHHHHHhcCCEEEeCCcchh-----------
Confidence 478999999999999999999999999999987642 122 2223456777887765433210
Q ss_pred EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
..-.+|.||.++|..|+.....
T Consensus 65 ------~~~~~d~vv~~~g~~~~~~~~~ 86 (450)
T PRK14106 65 ------FLEGVDLVVVSPGVPLDSPPVV 86 (450)
T ss_pred ------HhhcCCEEEECCCCCCCCHHHH
Confidence 1124799999999988877553
No 289
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.17 E-value=0.0045 Score=63.64 Aligned_cols=97 Identities=24% Similarity=0.228 Sum_probs=69.4
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc--------------CC-----c-----------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC--------------MA-----R----------------------- 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~--------------l~-----~----------------------- 77 (356)
-.|+|||+|..|+-+|..+++.|.+|+|+++.+.. ++ .
T Consensus 6 ~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~d~~~v 85 (566)
T PRK06452 6 YDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLVDQDAA 85 (566)
T ss_pred CcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCCCHHHH
Confidence 47999999999999999999999999999876321 00 0
Q ss_pred -------------------cC----------------------------CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEc
Q 018416 78 -------------------LF----------------------------TPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 110 (356)
Q Consensus 78 -------------------~~----------------------------d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 110 (356)
.| ...+...+.+.+++.||+++.++.++++..
T Consensus 86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~- 164 (566)
T PRK06452 86 ELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWFSLDLVT- 164 (566)
T ss_pred HHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEE-
Confidence 00 011223344445567899999999999876
Q ss_pred CCCcEEEEEeC---CCc--EEecCeEEEecCC
Q 018416 111 SNGKVVAVNLR---DGN--RLPTDMVVVGIGI 137 (356)
Q Consensus 111 ~~g~v~~v~~~---~g~--~i~~D~vi~a~G~ 137 (356)
++|++..+... +++ .+.++.||+|+|-
T Consensus 165 ~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 165 DNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred ECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 46888776543 332 5789999999993
No 290
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.16 E-value=0.00053 Score=67.29 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=33.2
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l 75 (356)
++|+|||||++|+|+|..|+++|++|+|+++++...
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~ 38 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK 38 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence 589999999999999999999999999999877654
No 291
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.16 E-value=0.0041 Score=63.00 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=30.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.|+|||||.+|+-+|..|+++|.+|.|+|+.
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 47999999999999999999999999999987
No 292
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.14 E-value=0.0081 Score=61.94 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=40.7
Q ss_pred HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC-Cc--EEec-CeEEEecCC-CCCchhhh
Q 018416 87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD-GN--RLPT-DMVVVGIGI-RPNTSLFE 145 (356)
Q Consensus 87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~-g~--~i~~-D~vi~a~G~-~p~~~l~~ 145 (356)
+.+.+++.||++++++.++++.. +++++..|...+ ++ ++.+ +.||+|+|- ..|.++.+
T Consensus 227 L~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~ 289 (578)
T PRK12843 227 LLYSLRARGVRILTQTDVESLET-DHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRR 289 (578)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEe-eCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHH
Confidence 44555667999999999999876 467777776543 33 4776 789999984 44555554
No 293
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.13 E-value=0.0032 Score=61.43 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=67.7
Q ss_pred HHHHCCCcEEEE-eeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEec
Q 018416 57 SLVINKINVTMV-FPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGI 135 (356)
Q Consensus 57 ~L~~~G~~Vtlv-~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~ 135 (356)
.+...|...-++ .+.+|+... .-+++.+.+.+.|++.|++++++++|..++. +++.+..+.+++|+++++|.||+|+
T Consensus 149 e~~aa~a~~eil~~~~rHiGTD-~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~-~~~~~~~v~~~~g~~i~~~~vvlA~ 226 (486)
T COG2509 149 EFRAAGAGEEILPIYQRHIGTD-ILPKVVKNIREYLESLGGEIRFNTEVEDIEI-EDNEVLGVKLTKGEEIEADYVVLAP 226 (486)
T ss_pred HHHHhCCCceeeeccccccCcc-chHHHHHHHHHHHHhcCcEEEeeeEEEEEEe-cCCceEEEEccCCcEEecCEEEEcc
Confidence 334455555444 345566554 6788999999999999999999999999987 5666778899999999999999999
Q ss_pred CCCCCchh
Q 018416 136 GIRPNTSL 143 (356)
Q Consensus 136 G~~p~~~l 143 (356)
|+.....+
T Consensus 227 Grsg~dw~ 234 (486)
T COG2509 227 GRSGRDWF 234 (486)
T ss_pred CcchHHHH
Confidence 99877654
No 294
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.10 E-value=0.0074 Score=62.33 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus 9 DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~ 39 (588)
T PRK08958 9 DAVVIGAGGAGMRAALQISQSGQSCALLSKV 39 (588)
T ss_pred CEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 6999999999999999999999999999986
No 295
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.09 E-value=0.0073 Score=62.24 Aligned_cols=53 Identities=13% Similarity=0.148 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE---eCCCc--EEecCeEEEecCCC
Q 018416 85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN---LRDGN--RLPTDMVVVGIGIR 138 (356)
Q Consensus 85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~---~~~g~--~i~~D~vi~a~G~~ 138 (356)
..+.+.+++.||+++.++.++++.. +++++..+. +.+++ .+.++.||+|+|--
T Consensus 139 ~~L~~~~~~~gi~i~~~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 139 HELVNNLRRYGVTIYDEWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHhhCCCEEEeCcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 3345556667899999999999875 466665553 34554 58999999999964
No 296
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.09 E-value=0.01 Score=61.32 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=41.0
Q ss_pred HHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCc--EEecC-eEEEecC-CCCCchhhhc
Q 018416 90 YYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPTD-MVVVGIG-IRPNTSLFEG 146 (356)
Q Consensus 90 ~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~D-~vi~a~G-~~p~~~l~~~ 146 (356)
..++.|+++++++.++++..+++|++..|... +++ .+.+. .||+|+| +.-|.++.+.
T Consensus 222 ~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 222 ALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred HHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 34567899999999999987667888776553 343 46787 6999887 5666666553
No 297
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.06 E-value=0.0017 Score=64.61 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=66.2
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC------------------------------------------Cc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM------------------------------------------AR 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l------------------------------------------~~ 77 (356)
-.|+|||||-.|+|.|.+.+|.|+++.++.....-. ..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 479999999999999999999999999887652110 00
Q ss_pred -----------cCCHH-HHHHHHHHHHh-CCCEEEeCCeeeEEEEcCCC-cEEEEEeCCCcEEecCeEEEecCC
Q 018416 78 -----------LFTPK-IASYYEEYYKS-KGVKFVKGTVLSSFDVDSNG-KVVAVNLRDGNRLPTDMVVVGIGI 137 (356)
Q Consensus 78 -----------~~d~~-~~~~~~~~l~~-~GV~v~~~~~v~~i~~~~~g-~v~~v~~~~g~~i~~D~vi~a~G~ 137 (356)
+.|.. ..+.+++.++. .++.++.+ .|+++.. +++ .+..|.+.+|..+.|+.||+++|.
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~-e~~~~v~GV~t~~G~~~~a~aVVlTTGT 156 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIV-EEGQRVVGVVTADGPEFHAKAVVLTTGT 156 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhh-cCCCeEEEEEeCCCCeeecCEEEEeecc
Confidence 01111 12233344433 46666644 4555544 344 588999999999999999999995
No 298
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.05 E-value=0.0017 Score=69.19 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=31.0
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCc
Q 018416 41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAH 73 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~ 73 (356)
+|+|||||+.|+-+|..|++. |++|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 899999999875
No 299
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.05 E-value=0.0032 Score=60.74 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=32.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
.+|+|||||..|+-.|..|.++|.+|+++|.++.+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 58999999999999999999999999999997544
No 300
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.00 E-value=0.011 Score=61.00 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=30.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 13 ~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 13 FDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 47999999999999999999999999999985
No 301
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.99 E-value=0.0098 Score=61.94 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 52 DVlVIG~G~AGl~AAl~Aae~G~~VilveK~ 82 (635)
T PLN00128 52 DAVVVGAGGAGLRAAIGLSEHGFNTACITKL 82 (635)
T ss_pred CEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence 6999999999999999999999999999886
No 302
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.95 E-value=0.01 Score=61.77 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=30.4
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
-.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 379999999999999999999999999998863
No 303
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.91 E-value=0.016 Score=59.88 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCEEEeCCeeeEEEEcCC---CcEEEEEe---CCCc--EEecCeEEEecCCCC
Q 018416 85 SYYEEYYKSKGVKFVKGTVLSSFDVDSN---GKVVAVNL---RDGN--RLPTDMVVVGIGIRP 139 (356)
Q Consensus 85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~---g~v~~v~~---~~g~--~i~~D~vi~a~G~~p 139 (356)
..+.+.+++.||+++.++.++++..+++ |++..+.. .+++ .+.++.||+|+|-..
T Consensus 144 ~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 144 QTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 3455556678999999999999875332 67766643 3554 578999999999643
No 304
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.89 E-value=0.014 Score=60.25 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=29.5
Q ss_pred cEEEECCchHHHHHHHHHHHCC---CcEEEEeeCC
Q 018416 41 NAVVIGGGYIGMECAASLVINK---INVTMVFPEA 72 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G---~~Vtlv~~~~ 72 (356)
.|+|||+|..|+-+|..+++.| .+|+|+++.+
T Consensus 7 DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 7 DVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred CEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 6999999999999999999998 8999999763
No 305
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.85 E-value=0.0086 Score=62.48 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=29.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.++|||+|+.|..+|..++++|.+|.+|++.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 6999999999999999999999999999964
No 306
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.83 E-value=0.017 Score=59.54 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC--CCc-EEec-CeEEEecCCCCC
Q 018416 86 YYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR--DGN-RLPT-DMVVVGIGIRPN 140 (356)
Q Consensus 86 ~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~--~g~-~i~~-D~vi~a~G~~p~ 140 (356)
.+.+.+++.|+++++++.++++.. +++++..+... ++. ++.+ +.||+|+|.-.+
T Consensus 222 ~L~~~a~~~Gv~i~~~t~v~~l~~-~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 222 RLLKSAEDLGVRIWESAPARELLR-EDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEE-eCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 344456778999999999999876 36776665442 332 5788 999999986554
No 307
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.78 E-value=0.016 Score=59.81 Aligned_cols=33 Identities=21% Similarity=0.417 Sum_probs=30.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
+..|+|||+|..|+-+|..+++.|.+|+|+++.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 457999999999999999999999999999964
No 308
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.77 E-value=0.0042 Score=52.07 Aligned_cols=83 Identities=22% Similarity=0.263 Sum_probs=56.1
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC
Q 018416 42 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121 (356)
Q Consensus 42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~ 121 (356)
++|+|+|.+|.-+|..|++.|.+|+++.|.++ .+.+++.|+.+.....-..+.. .....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~--------------~~~~~~~g~~~~~~~~~~~~~~-------~~~~~ 59 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPR--------------LEAIKEQGLTITGPDGDETVQP-------PIVIS 59 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHH--------------HHHHHHHCEEEEETTEEEEEEE-------EEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcccc--------------HHhhhheeEEEEecccceeccc-------ccccC
Confidence 68999999999999999999999999987641 2347788999887662222211 12222
Q ss_pred CC--cEEecCeEEEecCCCCCchhhh
Q 018416 122 DG--NRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 122 ~g--~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
+. ..-++|.||+++=.......++
T Consensus 60 ~~~~~~~~~D~viv~vKa~~~~~~l~ 85 (151)
T PF02558_consen 60 APSADAGPYDLVIVAVKAYQLEQALQ 85 (151)
T ss_dssp SHGHHHSTESEEEE-SSGGGHHHHHH
T ss_pred cchhccCCCcEEEEEecccchHHHHH
Confidence 22 3356899999976554444433
No 309
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0069 Score=59.41 Aligned_cols=32 Identities=31% Similarity=0.360 Sum_probs=29.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.|+|||||-.|+|.|.+.+|.|.+.+++...
T Consensus 29 ~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 29 YDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred ccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 37999999999999999999999999998775
No 310
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.75 E-value=0.012 Score=59.80 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=28.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
..|+|||+|..|+-+|..+++ |.+|+++++.+
T Consensus 4 ~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~ 35 (510)
T PRK08071 4 ADVIIIGSGIAALTVAKELCH-EYNVIIITKKT 35 (510)
T ss_pred cCEEEECccHHHHHHHHHhhc-CCCEEEEeccC
Confidence 479999999999999999976 89999998864
No 311
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.72 E-value=0.012 Score=55.15 Aligned_cols=101 Identities=25% Similarity=0.254 Sum_probs=71.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc--------------------------c--------------
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR--------------------------L-------------- 78 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~--------------------------~-------------- 78 (356)
...|||||+|..|+..+..+...|-.|++++....+... .
T Consensus 9 lspvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAsSGINgA~TetQ~~~~i~Dsp~lf~~Dtl~saksk~~ 88 (477)
T KOG2404|consen 9 LSPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKASSGINGAGTETQEKLHIKDSPELFVKDTLSSAKSKGV 88 (477)
T ss_pred CCcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecccCcCCCchhhhhhcccccChHHHhhhhhhhcccCCc
Confidence 346999999999999999999998889999886322100 0
Q ss_pred ------------------------------------------------CCHHHHHHHHHHHHhC------CCEEEeCCee
Q 018416 79 ------------------------------------------------FTPKIASYYEEYYKSK------GVKFVKGTVL 104 (356)
Q Consensus 79 ------------------------------------------------~d~~~~~~~~~~l~~~------GV~v~~~~~v 104 (356)
-.-++...+...|++. -+++.++++|
T Consensus 89 ~eLm~~La~~S~~AvewL~~ef~lkld~la~lgGHSvpRTHr~s~plppgfei~~~L~~~l~k~as~~pe~~ki~~nskv 168 (477)
T KOG2404|consen 89 PELMEKLAANSASAVEWLRGEFDLKLDLLAQLGGHSVPRTHRSSGPLPPGFEIVKALSTRLKKKASENPELVKILLNSKV 168 (477)
T ss_pred HHHHHHHHhcCHHHHHHHhhhcccchHHHHHhcCCCCCcccccCCCCCCchHHHHHHHHHHHHhhhcChHHHhhhhccee
Confidence 0113334444444431 3778899999
Q ss_pred eEEEEcCCCcEEEEEeCC--C--cEEecCeEEEecCCCCC
Q 018416 105 SSFDVDSNGKVVAVNLRD--G--NRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 105 ~~i~~~~~g~v~~v~~~~--g--~~i~~D~vi~a~G~~p~ 140 (356)
+.+.. .+|++..|+.-| | ..+.+|.|++|+|--..
T Consensus 169 v~il~-n~gkVsgVeymd~sgek~~~~~~~VVlatGGf~y 207 (477)
T KOG2404|consen 169 VDILR-NNGKVSGVEYMDASGEKSKIIGDAVVLATGGFGY 207 (477)
T ss_pred eeeec-CCCeEEEEEEEcCCCCccceecCceEEecCCcCc
Confidence 99986 688888777643 4 35889999999985544
No 312
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.71 E-value=0.0021 Score=64.74 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=37.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~ 77 (356)
+.++|+|||+|.+|+-+|..|.+.|.+|+|+|.++++..+
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGR 53 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGR 53 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCce
Confidence 4679999999999999999999999999999999988655
No 313
>PRK05320 rhodanese superfamily protein; Provisional
Probab=96.71 E-value=0.0019 Score=59.48 Aligned_cols=72 Identities=14% Similarity=0.030 Sum_probs=61.8
Q ss_pred EEEeCCCHHHHHHHHHHHHcCCCcCcHHH-HhhcCCCcccCcCC----CCCCCCccccccccccccCccccchhhhhhHH
Q 018416 263 SFLEGGTKEEYEAIAKATRLQPVVEDLAE-LETQGLGFALAVSQ----KPLPSTPVDGKTVPGLVLGKSLYPLHATAGVI 337 (356)
Q Consensus 263 a~~vg~~~~~~~~~a~ai~~~~~~~dl~~-l~~~~~~yap~~~~----~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 337 (356)
+++-| ..++++.++.+|+.+++++||.. ++ ++|+|||++ ++++.+.+++.+.|.+.+..+.++++|+.+..
T Consensus 46 ~t~~g-~~~~id~~~~~l~~~~~~~dl~~k~~---~~~~~pF~~l~vk~k~eiv~~g~~~~n~~~~~~~~is~~el~~~l 121 (257)
T PRK05320 46 LFLAG-TREAIDAFYAWLRADARFADLQVKES---LSDSQPFRRMLVKLKREIITMKRPAIRPELGRAPSVDAATLKRWL 121 (257)
T ss_pred EEEEe-eHHHHHHHHHHHhhCCCccCceeecc---cccCCCchhccchhhhHHhhcCCcccCcccCcCceeCHHHHHHHH
Confidence 34445 46789999999999999999987 77 899999999 89999999998999999999999998887654
Q ss_pred H
Q 018416 338 L 338 (356)
Q Consensus 338 ~ 338 (356)
.
T Consensus 122 ~ 122 (257)
T PRK05320 122 D 122 (257)
T ss_pred h
Confidence 3
No 314
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.71 E-value=0.022 Score=59.63 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=29.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.|+|||+|..|+-+|..+++.|.+|.|+++.
T Consensus 6 ~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~ 37 (657)
T PRK08626 6 TDALVIGAGLAGLRVAIAAAQRGLDTIVLSLV 37 (657)
T ss_pred ccEEEECccHHHHHHHHHHHHcCCCEEEEeCC
Confidence 36999999999999999999999999999865
No 315
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.70 E-value=0.012 Score=60.32 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.4
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
-.|+|||+|..|+-+|..++ .|.+|.|+++.+
T Consensus 10 ~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~ 41 (553)
T PRK07395 10 FDVLVVGSGAAGLYAALCLP-SHLRVGLITKDT 41 (553)
T ss_pred CCEEEECccHHHHHHHHHhh-cCCCEEEEEccC
Confidence 46999999999999999986 499999999864
No 316
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.67 E-value=0.022 Score=63.51 Aligned_cols=35 Identities=26% Similarity=0.379 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~ 73 (356)
.-.|||||+|..|+-+|...++.|.+|.++|+.+.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 45799999999999999999999999999998743
No 317
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.66 E-value=0.013 Score=57.79 Aligned_cols=125 Identities=22% Similarity=0.388 Sum_probs=76.1
Q ss_pred CCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC---C--cEEecCeEEEecC
Q 018416 62 KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD---G--NRLPTDMVVVGIG 136 (356)
Q Consensus 62 G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~---g--~~i~~D~vi~a~G 136 (356)
..+|+++...-+-+. ...-++..+.=++.||+++.+ ++.+|...+++.+ .|...| | .++++|+|++++|
T Consensus 400 d~~v~I~YmDiRafG----~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l-~V~~EdTl~g~~~e~~~DLVVLa~G 473 (622)
T COG1148 400 DTDVTIYYMDIRAFG----KDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKL-IVRVEDTLTGEVKEIEADLVVLATG 473 (622)
T ss_pred CcceeEEEEEeeccC----ccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCee-EEEEEeccCccceecccceEEEeec
Confidence 457888766554333 223333333334779999977 5566665556652 233332 3 4689999999999
Q ss_pred CCCCchh---hhc-cccc-ccCcEEEe-ccc---ccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHH
Q 018416 137 IRPNTSL---FEG-QLTL-EKGGIKVT-GRL---QSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVA 203 (356)
Q Consensus 137 ~~p~~~l---~~~-~l~~-~~g~I~vd-~~l---~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~ 203 (356)
..|.... ..- ++.. ++|+++.. +.+ +|+.++||.+|-|..+.+ ++.++.||..||.
T Consensus 474 mep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqgPkd-----------I~~siaqa~aAA~ 538 (622)
T COG1148 474 MEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQGPKD-----------IADSIAQAKAAAA 538 (622)
T ss_pred cccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccCCcc-----------HHHHHHHhHHHHH
Confidence 9986542 221 1333 56777654 333 457899999998876543 4455556665553
No 318
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.63 E-value=0.034 Score=56.49 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=29.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
-.|||||+| +|+-+|..+++.|.+|+|+++.+
T Consensus 8 ~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~ 39 (513)
T PRK12837 8 VDVLVAGSG-GGVAGAYTAAREGLSVALVEATD 39 (513)
T ss_pred cCEEEECch-HHHHHHHHHHHCCCcEEEEecCC
Confidence 479999999 99999999999999999999764
No 319
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.62 E-value=0.029 Score=57.46 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=30.9
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
-.|+|||+|..|+-+|..+++.|.+|.|+++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999999876
No 320
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.60 E-value=0.0098 Score=52.92 Aligned_cols=107 Identities=14% Similarity=0.193 Sum_probs=65.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+++++|||||.+|..-+..|.+.|.+||++.+. +++++.+ ..++.+|+++.+.-
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~-------~~~~l~~----l~~~~~i~~~~~~~-------------- 62 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE-------LESELTL----LAEQGGITWLARCF-------------- 62 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC-------CCHHHHH----HHHcCCEEEEeCCC--------------
Confidence 5789999999999999999999999999999753 3344422 22233444432210
Q ss_pred EEeCCCcEEecCeEEEecCCC-CCchhhhcccccccCcEEEe---cc--cccCCCCEEEEcccc
Q 018416 118 VNLRDGNRLPTDMVVVGIGIR-PNTSLFEGQLTLEKGGIKVT---GR--LQSSNSSVYAVGDVA 175 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~-p~~~l~~~~l~~~~g~I~vd---~~--l~ts~~~VyAiGD~~ 175 (356)
..+..-.+++|+.|+|.. .|..+.... ...++.|| +. ..-..|.++--||..
T Consensus 63 ---~~~dl~~~~lVi~at~d~~ln~~i~~~a---~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~ 120 (205)
T TIGR01470 63 ---DADILEGAFLVIAATDDEELNRRVAHAA---RARGVPVNVVDDPELCSFIFPSIVDRSPVV 120 (205)
T ss_pred ---CHHHhCCcEEEEECCCCHHHHHHHHHHH---HHcCCEEEECCCcccCeEEEeeEEEcCCEE
Confidence 011122489999999976 555444321 23455554 21 111356666666643
No 321
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.59 E-value=0.039 Score=56.71 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=29.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.|+|||+|..|+-+|..+++.|.+|.|+|+.
T Consensus 7 ~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~ 38 (557)
T PRK12844 7 YDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ 38 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 36999999999999999999999999999976
No 322
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=96.58 E-value=0.0028 Score=62.81 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=33.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCccC
Q 018416 40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHCM 75 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~l 75 (356)
++|+|||||..|+-+|..|++.| .+|+|+|.++++.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCc
Confidence 47999999999999999999988 8999999988764
No 323
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.54 E-value=0.0085 Score=55.44 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=54.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccCCc---c---CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR---L---FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVD 110 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l~~---~---~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 110 (356)
...+|+|+|.|-+|.++|..|++.| .++|+++...--.+. . +..++.+.-.+.++++-.++.++.+|+.+..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~- 107 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD- 107 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec-
Confidence 5789999999999999999999999 589999876322111 1 1222322222223332233445555655531
Q ss_pred CCCcEEEEEeCCC-cEE--ecCeEEEecCC
Q 018416 111 SNGKVVAVNLRDG-NRL--PTDMVVVGIGI 137 (356)
Q Consensus 111 ~~g~v~~v~~~~g-~~i--~~D~vi~a~G~ 137 (356)
.+..++- +.+ .+|+||.|++.
T Consensus 108 ------~i~~e~~~~ll~~~~D~VIdaiD~ 131 (268)
T PRK15116 108 ------FITPDNVAEYMSAGFSYVIDAIDS 131 (268)
T ss_pred ------ccChhhHHHHhcCCCCEEEEcCCC
Confidence 1110110 112 48999999985
No 324
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.54 E-value=0.0047 Score=61.33 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=59.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+|+|+|||+|.+|+|++..+++...+|++..+ ...+.. ..+. ....++..+.. +..+. +++ .
T Consensus 185 ~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~-~~~~--------~~~~~~~~~~~--i~~~~--e~~---~ 247 (448)
T KOG1399|consen 185 RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHV-EPPE--------ILGENLWQVPS--IKSFT--EDG---S 247 (448)
T ss_pred cCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccc-cccc--------eeecceEEccc--ccccc--Ccc---e
Confidence 689999999999999999999999999988865 200000 0000 00112333322 55554 233 2
Q ss_pred EEeCCCcEEecCeEEEecCCCCCchhhhc
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG 146 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~~ 146 (356)
+.+.++....+|.+|+|+|..=...+++.
T Consensus 248 ~~~~~~~~~~~D~ii~ctgy~y~fPfl~~ 276 (448)
T KOG1399|consen 248 VFEKGGPVERVDRIIFCTGYKYKFPFLET 276 (448)
T ss_pred EEEcCceeEEeeeEEEeeeeEeecceecc
Confidence 44567788899999999998755555543
No 325
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.54 E-value=0.038 Score=57.05 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=28.7
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCC
Q 018416 41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEA 72 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~ 72 (356)
.|+|||+|..|+-+|..+++. |.+|+|+++.+
T Consensus 6 DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~ 39 (582)
T PRK09231 6 DLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY 39 (582)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 699999999999999999987 47999999863
No 326
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.52 E-value=0.02 Score=58.20 Aligned_cols=32 Identities=31% Similarity=0.584 Sum_probs=27.6
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
...|+|||+|..|+-+|..++ +.+|+|+++.+
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~ 40 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAP 40 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEEEECCC
Confidence 357999999999999998886 57999998874
No 327
>PLN02815 L-aspartate oxidase
Probab=96.50 E-value=0.024 Score=58.61 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=29.1
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
-.|+|||+|..|+-+|..+++.| +|.|+++.+
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~ 61 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKDE 61 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence 37999999999999999999999 899998863
No 328
>PRK07233 hypothetical protein; Provisional
Probab=96.48 E-value=0.0039 Score=61.34 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=33.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
+|+|||+|..|+.+|..|++.|++|+|+|+.+++..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCC
Confidence 689999999999999999999999999999987644
No 329
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.0037 Score=61.98 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=34.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
+||+|+|+|..|+-+|..|++.|++|||+|+++.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GG 37 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGG 37 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCc
Confidence 5899999999999999999999999999999988754
No 330
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.45 E-value=0.046 Score=56.42 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=28.7
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCC
Q 018416 41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEA 72 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~ 72 (356)
.|+|||+|..|+-+|..+++. |.+|+|+++.+
T Consensus 5 DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~ 38 (580)
T TIGR01176 5 DIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY 38 (580)
T ss_pred eEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 699999999999999999987 57999999863
No 331
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.43 E-value=0.0013 Score=61.21 Aligned_cols=104 Identities=23% Similarity=0.340 Sum_probs=65.6
Q ss_pred CCcEEEECCchHHHHHHHHHHHC-CC-cEEEEeeCCc-cCCcc---CCHHHHHHHH-----HHHHhCCCEEEeCCeeeEE
Q 018416 39 GGNAVVIGGGYIGMECAASLVIN-KI-NVTMVFPEAH-CMARL---FTPKIASYYE-----EYYKSKGVKFVKGTVLSSF 107 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~-G~-~Vtlv~~~~~-~l~~~---~d~~~~~~~~-----~~l~~~GV~v~~~~~v~~i 107 (356)
.-+++|||||--|+.+|..+.++ |. +|-++|+.+. ...+. ....+...-. ..|--.|.+-+. ..|+++
T Consensus 39 h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~f 117 (446)
T KOG3851|consen 39 HFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKEF 117 (446)
T ss_pred ceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccCcccccccCCcHHHH-HHHHhc
Confidence 45799999999999999998875 43 6888988753 11111 1111111110 111112222222 456777
Q ss_pred EEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhhcc
Q 018416 108 DVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFEGQ 147 (356)
Q Consensus 108 ~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~ 147 (356)
+++ ++ .|.+.+|++|.+|.+|+|.|..-+-+-++..
T Consensus 118 ~P~-~N---~v~t~gg~eIsYdylviA~Giql~y~~IkGl 153 (446)
T KOG3851|consen 118 NPD-KN---TVVTRGGEEISYDYLVIAMGIQLDYGKIKGL 153 (446)
T ss_pred CCC-cC---eEEccCCcEEeeeeEeeeeeceeccchhcCh
Confidence 663 22 5778899999999999999998777655543
No 332
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.43 E-value=0.013 Score=57.95 Aligned_cols=87 Identities=13% Similarity=0.212 Sum_probs=55.8
Q ss_pred HHHHHHHC--CCcEEEEeeCCcc------CCcc----CC-H-HHHHH-HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEE
Q 018416 54 CAASLVIN--KINVTMVFPEAHC------MARL----FT-P-KIASY-YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAV 118 (356)
Q Consensus 54 ~A~~L~~~--G~~Vtlv~~~~~~------l~~~----~d-~-~~~~~-~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v 118 (356)
+|..|+++ ..+|||+++.+.+ ++.. .. + +.... ..+.+++.||+++.++.|++++. ++..+ .+
T Consensus 2 aA~~l~~~~~~~~Vtlid~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~-~~~~v-~~ 79 (427)
T TIGR03385 2 AASRVRRLDKESDIIVFEKTEDVSFANCGLPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVND-ERQTV-VV 79 (427)
T ss_pred HHHHHHhhCCCCcEEEEEcCCceeEEcCCCCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEEC-CCCEE-EE
Confidence 46677766 4679999998854 1111 11 1 11111 23344888999999999999975 33332 23
Q ss_pred EeC-CCcEEe--cCeEEEecCCCCCch
Q 018416 119 NLR-DGNRLP--TDMVVVGIGIRPNTS 142 (356)
Q Consensus 119 ~~~-~g~~i~--~D~vi~a~G~~p~~~ 142 (356)
... +++++. +|.+|+|+|.+|+..
T Consensus 80 ~~~~~~~~~~~~yd~lIiATG~~p~~~ 106 (427)
T TIGR03385 80 RNNKTNETYEESYDYLILSPGASPIVP 106 (427)
T ss_pred EECCCCCEEecCCCEEEECCCCCCCCC
Confidence 322 345777 999999999998754
No 333
>PLN02268 probable polyamine oxidase
Probab=96.40 E-value=0.0044 Score=61.36 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=34.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~ 77 (356)
.+|+|||+|.+|+-+|..|.+.|++|+|+|.++++..+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGr 38 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGR 38 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCce
Confidence 37999999999999999999999999999999887544
No 334
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.40 E-value=0.04 Score=56.66 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=39.0
Q ss_pred HHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC-CCc--EEec-CeEEEecC-CCCCchhhh
Q 018416 88 EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR-DGN--RLPT-DMVVVGIG-IRPNTSLFE 145 (356)
Q Consensus 88 ~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~-~g~--~i~~-D~vi~a~G-~~p~~~l~~ 145 (356)
.+.+++.||++++++.++++.. ++|++..|... +|+ .+.+ ..||+|+| +.-|.++.+
T Consensus 224 ~~~~~~~Gv~i~~~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~em~~ 285 (564)
T PRK12845 224 FAGVLRAGIPIWTETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDMEMRW 285 (564)
T ss_pred HHHHHHCCCEEEecCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccccHHHHH
Confidence 3345678999999999999875 46777776443 343 3555 58999998 444544543
No 335
>PRK12839 hypothetical protein; Provisional
Probab=96.39 E-value=0.051 Score=56.01 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=40.3
Q ss_pred HHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe--CCCc-EE-ecCeEEEecC-CCCCchhhh
Q 018416 87 YEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL--RDGN-RL-PTDMVVVGIG-IRPNTSLFE 145 (356)
Q Consensus 87 ~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~--~~g~-~i-~~D~vi~a~G-~~p~~~l~~ 145 (356)
+.+..++.||+++.++.++++..+++|++..|.. .+++ .+ .++.||+|+| +.-|.++..
T Consensus 220 L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~~~~ 283 (572)
T PRK12839 220 LLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVDRRK 283 (572)
T ss_pred HHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHHHHH
Confidence 3444566899999999999987645677777754 3443 23 4589999997 444455443
No 336
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.37 E-value=0.023 Score=55.23 Aligned_cols=96 Identities=26% Similarity=0.435 Sum_probs=66.9
Q ss_pred EEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCc--cCCHHH---------HHHHHHHHHhCCCEEEeCCeeeEEE
Q 018416 42 AVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMAR--LFTPKI---------ASYYEEYYKSKGVKFVKGTVLSSFD 108 (356)
Q Consensus 42 vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~--~~d~~~---------~~~~~~~l~~~GV~v~~~~~v~~i~ 108 (356)
++|||+|..|+.+|..+.+. +.+++++...+..... .++..+ ........++.+++++++++++++.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~id 80 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPRFNRATGIDVRTGTEVTSID 80 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccchhHHhhCCEEeeCCEEEEec
Confidence 58999999999999998885 5578877776543210 011111 1111111247799999999999997
Q ss_pred EcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 109 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 109 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
. +. ..+.+.+| ++.+|.+++++|.+|...
T Consensus 81 ~-~~---~~v~~~~g-~~~yd~LvlatGa~~~~~ 109 (415)
T COG0446 81 P-EN---KVVLLDDG-EIEYDYLVLATGARPRPP 109 (415)
T ss_pred C-CC---CEEEECCC-cccccEEEEcCCCcccCC
Confidence 5 22 34667777 899999999999998875
No 337
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=96.35 E-value=0.0059 Score=55.54 Aligned_cols=93 Identities=18% Similarity=0.343 Sum_probs=60.4
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCE----------EE--eCCeeeE
Q 018416 41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVK----------FV--KGTVLSS 106 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~----------v~--~~~~v~~ 106 (356)
+.+|||||..|+.||+.|+.. ..+|.++..++-+-. -.--..+.++|++..|+ +. .+ .|..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks----vtn~~~i~~ylekfdv~eq~~~elg~~f~~~~~-~v~~ 75 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS----VTNYQKIGQYLEKFDVKEQNCHELGPDFRRFLN-DVVT 75 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH----HhhHHHHHHHHHhcCccccchhhhcccHHHHHH-hhhh
Confidence 368999999999999999975 557888877654322 11223333444444432 11 01 1222
Q ss_pred EEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 107 FDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 107 i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+.. .-..+++.+|.++.++.+++++|.+|...
T Consensus 76 ~~s----~ehci~t~~g~~~ky~kKOG~tg~kPklq 107 (334)
T KOG2755|consen 76 WDS----SEHCIHTQNGEKLKYFKLCLCTGYKPKLQ 107 (334)
T ss_pred hcc----ccceEEecCCceeeEEEEEEecCCCccee
Confidence 221 11467889999999999999999999653
No 338
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.28 E-value=0.041 Score=55.52 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=31.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.-.++|||||..|+-+|..++.+|.+|.|+|++
T Consensus 12 ~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~ 44 (532)
T COG0578 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVEKG 44 (532)
T ss_pred CCCEEEECCchhhHHHHHHHHhCCCeEEEEecC
Confidence 457999999999999999999999999999997
No 339
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.27 E-value=0.029 Score=54.32 Aligned_cols=102 Identities=20% Similarity=0.285 Sum_probs=75.0
Q ss_pred CcEEEECCchHHHHHHHHHHHC------CCcEEEEeeCCccCCcc-----------------------------------
Q 018416 40 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMARL----------------------------------- 78 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~------G~~Vtlv~~~~~~l~~~----------------------------------- 78 (356)
-.|+|||+|+.|+..|-.|.++ ..+|.++|....+....
T Consensus 77 ~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d~~~ 156 (621)
T KOG2415|consen 77 VDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSDKFK 156 (621)
T ss_pred ccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccccccee
Confidence 4799999999999999988764 45788888874321100
Q ss_pred ---------------CC---------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCC------C-----
Q 018416 79 ---------------FT---------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRD------G----- 123 (356)
Q Consensus 79 ---------------~d---------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~------g----- 123 (356)
++ ..+...+-+..++.||+++.+....++.-++||.|..+-++| |
T Consensus 157 fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~ 236 (621)
T KOG2415|consen 157 FLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDT 236 (621)
T ss_pred eeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCcccc
Confidence 00 124556667778899999999999999888899888887654 2
Q ss_pred ----cEEecCeEEEecCCCCCc
Q 018416 124 ----NRLPTDMVVVGIGIRPNT 141 (356)
Q Consensus 124 ----~~i~~D~vi~a~G~~p~~ 141 (356)
-++.+..-|+|-|-+...
T Consensus 237 FerGme~hak~TifAEGc~G~L 258 (621)
T KOG2415|consen 237 FERGMEFHAKVTIFAEGCHGSL 258 (621)
T ss_pred ccccceecceeEEEeccccchh
Confidence 257788888888876543
No 340
>PRK07208 hypothetical protein; Provisional
Probab=96.26 E-value=0.006 Score=61.22 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
+.++|+|||||++|+-+|..|.++|.+|+++|+++++..
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 457899999999999999999999999999999877643
No 341
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.25 E-value=0.075 Score=55.15 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=28.6
Q ss_pred cEEEECCchHHHHHHHHHH----HCCCcEEEEeeCC
Q 018416 41 NAVVIGGGYIGMECAASLV----INKINVTMVFPEA 72 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~----~~G~~Vtlv~~~~ 72 (356)
.|+|||+|..|+-+|..++ +.|.+|+|+++.+
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 3899999999999999998 6799999998853
No 342
>PRK09077 L-aspartate oxidase; Provisional
Probab=96.24 E-value=0.072 Score=54.47 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.5
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
-.|+|||+|..|+-+|..+++. .+|+|+++.+
T Consensus 9 ~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~ 40 (536)
T PRK09077 9 CDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGP 40 (536)
T ss_pred CCEEEECchHHHHHHHHHHHHC-CCEEEEeccC
Confidence 3699999999999999999886 8999998863
No 343
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.20 E-value=0.013 Score=54.04 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=31.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCC------CcEEEEeeC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINK------INVTMVFPE 71 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G------~~Vtlv~~~ 71 (356)
+.++++|||||.||+.+|.+|++.+ ..||++|..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 4589999999999999999999987 789999886
No 344
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.18 E-value=0.0065 Score=61.33 Aligned_cols=37 Identities=30% Similarity=0.321 Sum_probs=33.9
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l 75 (356)
..++||||+|.-|+-+|..|++.|.+|+|+|+.+.+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~G 39 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVG 39 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCC
Confidence 4689999999999999999999999999999887653
No 345
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.11 E-value=0.023 Score=56.80 Aligned_cols=85 Identities=21% Similarity=0.175 Sum_probs=59.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 120 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~ 120 (356)
++.|||.|.+|+.+|..|.++|.+|++.++.+.. . .....+.|++.|++++.+.... .+ .+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~--~------~~~~~~~l~~~gi~~~~g~~~~-~~--------~~~- 63 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP--E------LLERQQELEQEGITVKLGKPLE-LE--------SFQ- 63 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch--h------hHHHHHHHHHcCCEEEECCccc-hh--------hhh-
Confidence 5899999999999999999999999999987542 1 1122345677899998765321 00 000
Q ss_pred CCCcEEecCeEEEecCCCCCchhhh
Q 018416 121 RDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 121 ~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
. ..-.+|.|+.++|..|+..++.
T Consensus 64 -~-~~~~~d~vv~s~gi~~~~~~~~ 86 (459)
T PRK02705 64 -P-WLDQPDLVVVSPGIPWDHPTLV 86 (459)
T ss_pred -H-HhhcCCEEEECCCCCCCCHHHH
Confidence 0 0124799999999988776554
No 346
>PTZ00367 squalene epoxidase; Provisional
Probab=96.10 E-value=0.01 Score=60.87 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=31.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 479999999999999999999999999999975
No 347
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.07 E-value=0.031 Score=55.93 Aligned_cols=92 Identities=18% Similarity=0.146 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeee
Q 018416 26 DANRLVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLS 105 (356)
Q Consensus 26 da~~i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~ 105 (356)
|..+++..+ .++++.|+|.|.+|+-+|..|.++|++|++.++.+... .+ .. .+.|++.|+.+..+....
T Consensus 4 ~~~~~~~~~---~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~---~~-~~----~~~l~~~gi~~~~~~~~~ 72 (458)
T PRK01710 4 DFNEFKKFI---KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEE---LG-EV----SNELKELGVKLVLGENYL 72 (458)
T ss_pred hHHHHhhhh---cCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCcc---ch-HH----HHHHHhCCCEEEeCCCCh
Confidence 344555555 46899999999999999999999999999998765321 11 11 234677898887542210
Q ss_pred EEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416 106 SFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 106 ~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
.. .-.+|+||.++|..|....+.
T Consensus 73 ----------~~-------~~~~dlVV~Spgi~~~~p~~~ 95 (458)
T PRK01710 73 ----------DK-------LDGFDVIFKTPSMRIDSPELV 95 (458)
T ss_pred ----------HH-------hccCCEEEECCCCCCCchHHH
Confidence 00 123799999999998766543
No 348
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=96.07 E-value=0.0078 Score=60.71 Aligned_cols=36 Identities=33% Similarity=0.372 Sum_probs=33.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l 75 (356)
++|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 579999999999999999999999999999997763
No 349
>PLN03000 amine oxidase
Probab=96.06 E-value=0.015 Score=62.04 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHhc-CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416 22 RDLADANRLVNVMKS-CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77 (356)
Q Consensus 22 ~~~~da~~i~~~l~~-~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~ 77 (356)
.+...+..+.+.+.. ...++|+|||+|+.|+.+|..|.+.|++|+++|.++++..+
T Consensus 166 in~g~~~~~~~~~~~~~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGR 222 (881)
T PLN03000 166 INFGIAQAIKDKFPAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGR 222 (881)
T ss_pred ccHHHHHHHHhhccccCCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCC
Confidence 456666666655432 23578999999999999999999999999999998776443
No 350
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.00 E-value=0.0086 Score=59.70 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=33.3
Q ss_pred CcEEEECCchHHHHHHHHHHHC----CCcEEEEeeCCccC
Q 018416 40 GNAVVIGGGYIGMECAASLVIN----KINVTMVFPEAHCM 75 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~----G~~Vtlv~~~~~~l 75 (356)
++|+|||||..|+-+|..|.+. |.+|+|+|+++++.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 5899999999999999999999 99999999988763
No 351
>PLN02576 protoporphyrinogen oxidase
Probab=95.96 E-value=0.011 Score=59.69 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=35.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHHC-CCcEEEEeeCCccCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVIN-KINVTMVFPEAHCMA 76 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~-G~~Vtlv~~~~~~l~ 76 (356)
...+|+|||||..|+-+|..|.+. |.+|+|+|.++++..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGG 50 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGG 50 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 346899999999999999999999 999999999987754
No 352
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=95.92 E-value=0.0082 Score=60.69 Aligned_cols=34 Identities=38% Similarity=0.420 Sum_probs=31.9
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416 42 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75 (356)
Q Consensus 42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l 75 (356)
|+|||+|..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCc
Confidence 6899999999999999999999999999998764
No 353
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=95.85 E-value=0.011 Score=58.92 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=32.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
+|+|||+|+.|+-+|..|.+.|.+|+|+|+++++..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG 36 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGG 36 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999886543
No 354
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=95.82 E-value=0.012 Score=57.11 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=31.8
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
..+|+|||||.+|+-+|..|+++|.+|+++++..
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 4689999999999999999999999999999874
No 355
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=95.81 E-value=0.092 Score=51.87 Aligned_cols=91 Identities=23% Similarity=0.350 Sum_probs=55.8
Q ss_pred HHHHHHhC-CCEEEeCCeeeEEEEcCCCc-EEEEE-eCC--CcEEecCeEEEecCCCCCchhhhccccc--ccCcEEEe-
Q 018416 87 YEEYYKSK-GVKFVKGTVLSSFDVDSNGK-VVAVN-LRD--GNRLPTDMVVVGIGIRPNTSLFEGQLTL--EKGGIKVT- 158 (356)
Q Consensus 87 ~~~~l~~~-GV~v~~~~~v~~i~~~~~g~-v~~v~-~~~--g~~i~~D~vi~a~G~~p~~~l~~~~l~~--~~g~I~vd- 158 (356)
+.+.+++. |++++++++|+.++..+||. ...+. +.+ .+++.++.|+++.|-..-.-+-+.++.. .=|+..|-
T Consensus 187 l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e~~gyggfPVsG 266 (488)
T PF06039_consen 187 LVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGIPEGKGYGGFPVSG 266 (488)
T ss_pred HHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCChhhcccCCCcccc
Confidence 44556555 99999999999999877873 22222 222 3579999999999976433333334432 22344443
Q ss_pred cccccCCC--------CEEEEcccccc
Q 018416 159 GRLQSSNS--------SVYAVGDVAAF 177 (356)
Q Consensus 159 ~~l~ts~~--------~VyAiGD~~~~ 177 (356)
.+++++.| -||-.-.+-..
T Consensus 267 ~fl~~~n~~vv~~H~aKVYgka~vGaP 293 (488)
T PF06039_consen 267 QFLRCKNPEVVAQHNAKVYGKASVGAP 293 (488)
T ss_pred eEEecCCHHHHHHhcceeeeeCCCCCC
Confidence 45666544 46766555333
No 356
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=95.80 E-value=0.014 Score=54.66 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=35.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCcc
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARL 78 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~ 78 (356)
+.+|||+|+.|.-+|..++++|++|-+|++++++....
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcc
Confidence 57999999999999999999999999999999987654
No 357
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=95.76 E-value=0.012 Score=58.81 Aligned_cols=37 Identities=30% Similarity=0.334 Sum_probs=32.6
Q ss_pred CcEEEECCchHHHHHHHHHHHC------CCcEEEEeeCCccCC
Q 018416 40 GNAVVIGGGYIGMECAASLVIN------KINVTMVFPEAHCMA 76 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~------G~~Vtlv~~~~~~l~ 76 (356)
++|+|||||.+|+-+|..|.+. |.+|+|+|.++++..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 5799999999999999999986 379999999987743
No 358
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.74 E-value=0.031 Score=55.65 Aligned_cols=83 Identities=20% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+++++|+|+|-+|+.+|..|++.|.+|++.++.+.. ... ..+.|++.|+++..+.....+
T Consensus 4 ~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~-----~~~----~~~~l~~~g~~~~~~~~~~~~---------- 64 (447)
T PRK02472 4 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS-----ENP----EAQELLEEGIKVICGSHPLEL---------- 64 (447)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc-----chh----HHHHHHhcCCEEEeCCCCHHH----------
Confidence 4689999999999999999999999999999765421 111 123466778887654321111
Q ss_pred EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
+.+ .+|.||.+.|..+...++.
T Consensus 65 --~~~----~~d~vV~s~gi~~~~~~~~ 86 (447)
T PRK02472 65 --LDE----DFDLMVKNPGIPYTNPMVE 86 (447)
T ss_pred --hcC----cCCEEEECCCCCCCCHHHH
Confidence 000 4799999999888776554
No 359
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.72 E-value=0.083 Score=50.07 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=30.8
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
..++.|||+|.+|.-+|..|++.|++|+++.|.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 358999999999999999999999999999885
No 360
>PLN02529 lysine-specific histone demethylase 1
Probab=95.71 E-value=0.015 Score=61.23 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=33.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
..++|+|||+|+.|+.+|..|+++|++|+++|.++++
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 195 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRP 195 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccC
Confidence 3578999999999999999999999999999997653
No 361
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.70 E-value=0.012 Score=51.25 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
+|.|||+|..|..+|..++..|.+|+++++.+.-+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~ 36 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALE 36 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence 589999999999999999999999999998776444
No 362
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.61 E-value=0.012 Score=46.22 Aligned_cols=35 Identities=31% Similarity=0.488 Sum_probs=31.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
++++++|||||.+|..-+..|.+.|.+||++.+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 68999999999999999999999999999997753
No 363
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.58 E-value=0.17 Score=54.99 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=30.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
-.|+|||+|..|+-+|..+++.|.+|+|+++.+
T Consensus 14 ~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~ 46 (897)
T PRK13800 14 CDVLVIGGGTAGTMAALTAAEHGANVLLLEKAH 46 (897)
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 369999999999999999999999999998764
No 364
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.58 E-value=0.021 Score=48.64 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=30.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEe
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVF 69 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~ 69 (356)
.+++++|||||.+|..-+..|.+.|.+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 68999999999999999999999999999994
No 365
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.49 E-value=0.048 Score=54.29 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=56.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHh--CCCEEEeCCeeeEEEEcCCCcE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS--KGVKFVKGTVLSSFDVDSNGKV 115 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~--~GV~v~~~~~v~~i~~~~~g~v 115 (356)
.+++++|+|.|-+|+.+|..|+++|.+|++.+..+.. +. .+.|++ .||+++.+.....
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~------~~-----~~~l~~~~~gi~~~~g~~~~~--------- 63 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP------ER-----VAQIGKMFDGLVFYTGRLKDA--------- 63 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc------hh-----HHHHhhccCCcEEEeCCCCHH---------
Confidence 4689999999999999999999999999999876531 11 122444 4777665431100
Q ss_pred EEEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416 116 VAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 116 ~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
..-.+|+||+++|..|....+.
T Consensus 64 --------~~~~~d~vv~spgi~~~~p~~~ 85 (445)
T PRK04308 64 --------LDNGFDILALSPGISERQPDIE 85 (445)
T ss_pred --------HHhCCCEEEECCCCCCCCHHHH
Confidence 0124799999999999877554
No 366
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.45 E-value=0.041 Score=52.95 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=57.9
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCcc-------CCc-------------cCC-------------------
Q 018416 41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHC-------MAR-------------LFT------------------- 80 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~-------l~~-------------~~d------------------- 80 (356)
.++.||.|+.++-+|..|...+ .++.++++.+.+ ++. .-+
T Consensus 4 D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl~~ 83 (341)
T PF13434_consen 4 DLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRLYE 83 (341)
T ss_dssp SEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-HHH
T ss_pred eEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCChhh
Confidence 5899999999999999999887 889999987643 000 000
Q ss_pred -----------HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCC--cEEEEEeC----CCcEEecCeEEEecCCCCCch
Q 018416 81 -----------PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNG--KVVAVNLR----DGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 81 -----------~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g--~v~~v~~~----~g~~i~~D~vi~a~G~~p~~~ 142 (356)
.+..++++-..++.+-.+..+.+|++|+..+++ ....|.+. +++.+.|+.|++++|.+|...
T Consensus 84 f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~iP 162 (341)
T PF13434_consen 84 FYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRIP 162 (341)
T ss_dssp HHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE---
T ss_pred hhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCCC
Confidence 112222222223344447889999999874443 23455552 346799999999999888764
No 367
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.45 E-value=0.072 Score=50.99 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=29.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.++.|||.|.+|.-+|..|++.|++|+++.|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 47999999999999999999999999999863
No 368
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.43 E-value=0.02 Score=55.72 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=33.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
+++|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG 38 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 689999999999999999999999999999877654
No 369
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.41 E-value=0.042 Score=52.02 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=54.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL 120 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~ 120 (356)
++.|+|+|.+|.=+|..|++.|.+|+++.|.++ .+.+++.|..+..... ... ......
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~--------------~~~l~~~GL~i~~~~~--~~~------~~~~~~ 59 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR--------------LEALKKKGLRIEDEGG--NFT------TPVVAA 59 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH--------------HHHHHhCCeEEecCCC--ccc------cccccc
Confidence 789999999999999999999988999988754 2456777888876544 100 001111
Q ss_pred CC-CcEEecCeEEEecCCCCCch
Q 018416 121 RD-GNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 121 ~~-g~~i~~D~vi~a~G~~p~~~ 142 (356)
.+ ...-++|+||+++=.--..+
T Consensus 60 ~~~~~~~~~Dlviv~vKa~q~~~ 82 (307)
T COG1893 60 TDAEALGPADLVIVTVKAYQLEE 82 (307)
T ss_pred cChhhcCCCCEEEEEeccccHHH
Confidence 11 22347999999876544333
No 370
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=95.40 E-value=0.02 Score=56.81 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCC--CcEEEEeeCCcc
Q 018416 40 GNAVVIGGGYIGMECAASLVINK--INVTMVFPEAHC 74 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G--~~Vtlv~~~~~~ 74 (356)
++++|||||.+|+-.|..|++++ ++||++|+++++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~ 37 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV 37 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence 47999999999999999999999 999999998765
No 371
>PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A.
Probab=95.37 E-value=0.068 Score=43.04 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=22.2
Q ss_pred HHHHHcCCCCCCCCCCCCeEEEEec-CceEEEeec
Q 018416 201 AVAAIMEPDKTDKFDYLPFFYSRVF-TLSWQFYGD 234 (356)
Q Consensus 201 aa~~i~g~~~~~~~~~~p~~~~~~~-~~~~~~~G~ 234 (356)
|++||.|.. .+|.+.|+||++++ ++.+..+|.
T Consensus 1 AG~NM~ga~--~py~hq~~fwSdlgp~vgyeAvG~ 33 (133)
T PF14721_consen 1 AGENMTGAN--KPYWHQSMFWSDLGPDVGYEAVGI 33 (133)
T ss_dssp HHHHHTTT-----S-S--EEEEESSTTEEEEEEES
T ss_pred CCccccCCC--CcccccchhHhhcCCCcCeEEeee
Confidence 578999876 68999999999996 788888885
No 372
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=95.36 E-value=0.1 Score=51.71 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=28.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
.|+|||+|..|+-+|..|.+. .+|+++.+.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~ 39 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGP 39 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCC
Confidence 799999999999999999988 9999999874
No 373
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.35 E-value=0.16 Score=49.40 Aligned_cols=84 Identities=14% Similarity=0.150 Sum_probs=62.1
Q ss_pred HHHHHHHHHHCCCcEEEEeeCCccCCcc-CCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-cEEec
Q 018416 51 GMECAASLVINKINVTMVFPEAHCMARL-FTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-NRLPT 128 (356)
Q Consensus 51 GlE~A~~L~~~G~~Vtlv~~~~~~l~~~-~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-~~i~~ 128 (356)
--++-..+.+.|.. +..++..+++|.. -..++.+.+...+++.||+++++++|++|+ +++ ..+.+.++ ..+.+
T Consensus 56 ~~d~~~fF~~~Gi~-~~~e~~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~--~~v~~~~~~~~~~a 130 (376)
T TIGR03862 56 AVALQDWARGLGIE-TFVGSSGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGT--LRFETPDGQSTIEA 130 (376)
T ss_pred HHHHHHHHHHCCCc-eEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCc--EEEEECCCceEEec
Confidence 44566777777875 3356667887742 346788999999999999999999999993 233 34555433 56999
Q ss_pred CeEEEecCCCC
Q 018416 129 DMVVVGIGIRP 139 (356)
Q Consensus 129 D~vi~a~G~~p 139 (356)
|.||+|+|..+
T Consensus 131 ~~vIlAtGG~s 141 (376)
T TIGR03862 131 DAVVLALGGAS 141 (376)
T ss_pred CEEEEcCCCcc
Confidence 99999999754
No 374
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.31 E-value=0.076 Score=50.20 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=30.7
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
.+++|+|+|.+|.-+|..|++.|.+|+++.|++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 479999999999999999999999999999863
No 375
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.29 E-value=0.076 Score=49.85 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=28.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEee
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFP 70 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~ 70 (356)
++.|+|+|.+|.-+|..|++.|.+|+++.|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 689999999999999999999999999987
No 376
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=95.29 E-value=0.024 Score=57.05 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=32.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l 75 (356)
+++|||+|..|+-+|..|++.|++|+++|+.+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCC
Confidence 58999999999999999999999999999988764
No 377
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=95.25 E-value=0.022 Score=59.06 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=30.1
Q ss_pred cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
++++|++|++||+|||+..... .+...+..+|++++.++.
T Consensus 389 ~~~~T~v~glyA~Ge~~~~~~~--------~l~~~s~~~g~~ag~~~~ 428 (608)
T PRK06854 389 YNRMTTVEGLFAAGDVVGGSPH--------KFSSGSFAEGRIAAKAAV 428 (608)
T ss_pred cccccCCCCEEEeeecCCCCcc--------hhHHHHHHHHHHHHHHHH
Confidence 9999999999999999753211 245566778888887765
No 378
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=95.23 E-value=0.028 Score=55.07 Aligned_cols=61 Identities=20% Similarity=0.313 Sum_probs=46.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccC----------------CHHHHHHHHHHHHhCCCEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLF----------------TPKIASYYEEYYKSKGVKFV 99 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~----------------d~~~~~~~~~~l~~~GV~v~ 99 (356)
+..+|+|||+|+.||-.|..|.+.|++|+++|.++++..+.. .| -...+....++.||...
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p-~~~~~l~~~k~~gv~~~ 82 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINP-THDALLAYAKEFGVPLE 82 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCc-cchhhhhhHHhcCCCCC
Confidence 457899999999999999999999999999999988754421 11 23444566677777643
No 379
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.16 E-value=0.053 Score=54.30 Aligned_cols=77 Identities=18% Similarity=0.114 Sum_probs=56.7
Q ss_pred CCCcEEEECCchHHHH-HHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEE
Q 018416 38 SGGNAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVV 116 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE-~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~ 116 (356)
+.+++.|+|-|-+|+. +|..|.++|.+|++.+..+. +. .+.|++.|+++..+.....
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~-------~~-----~~~l~~~gi~~~~~~~~~~---------- 63 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES-------AV-----TQRLLELGAIIFIGHDAEN---------- 63 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC-------hH-----HHHHHHCCCEEeCCCCHHH----------
Confidence 5679999999999999 79999999999999987542 11 1236777888875322100
Q ss_pred EEEeCCCcEEecCeEEEecCCCCCchhh
Q 018416 117 AVNLRDGNRLPTDMVVVGIGIRPNTSLF 144 (356)
Q Consensus 117 ~v~~~~g~~i~~D~vi~a~G~~p~~~l~ 144 (356)
+ -.+|+||+++|..|+...+
T Consensus 64 ---~-----~~~d~vv~spgi~~~~~~~ 83 (461)
T PRK00421 64 ---I-----KDADVVVYSSAIPDDNPEL 83 (461)
T ss_pred ---C-----CCCCEEEECCCCCCCCHHH
Confidence 1 1379999999998876644
No 380
>PLN02487 zeta-carotene desaturase
Probab=95.14 E-value=0.029 Score=57.63 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=33.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l 75 (356)
++|+|||+|..|+-+|..|++.|++|+++|+.+++.
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~g 111 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIG 111 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCC
Confidence 499999999999999999999999999999988764
No 381
>PLN02612 phytoene desaturase
Probab=95.13 E-value=0.089 Score=54.19 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecC
Q 018416 82 KIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIG 136 (356)
Q Consensus 82 ~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G 136 (356)
.+.+.+.+.|++.|.++++++.|++|+.++++.+..+.+.+|+++.+|.||++++
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 4556677778889999999999999987667766678888899999999999986
No 382
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=95.13 E-value=0.027 Score=56.83 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=32.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
.++|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 35 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIP 35 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 4899999999999999999999999999998765
No 383
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.12 E-value=0.026 Score=56.93 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=29.8
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCC
Q 018416 41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEA 72 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~ 72 (356)
.|+|||||.+|+-+|..|+++ |.+|+|+|+.+
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~ 35 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITLIERLD 35 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 589999999999999999997 99999999964
No 384
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=95.07 E-value=0.033 Score=59.17 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=34.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
+.++|+|||+|..|+.+|..|.+.|.+|+++|.++++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~ 273 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARP 273 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccC
Confidence 3578999999999999999999999999999998766
No 385
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.05 E-value=0.086 Score=53.03 Aligned_cols=79 Identities=24% Similarity=0.269 Sum_probs=56.0
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+++++|+|.|-+|+-+|..|.+.|.+|++.++.+. + . .+.+++.||+++.+....+
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~-------~-~----~~~l~~~gi~~~~~~~~~~----------- 70 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNET-------A-R----HKLIEVTGVADISTAEASD----------- 70 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChH-------H-H----HHHHHhcCcEEEeCCCchh-----------
Confidence 568999999999999999999999999999875421 1 1 2234556888765421100
Q ss_pred EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
.+ -.+|+||.+.|..|....+.
T Consensus 71 -~~-----~~~d~vV~Spgi~~~~p~~~ 92 (473)
T PRK00141 71 -QL-----DSFSLVVTSPGWRPDSPLLV 92 (473)
T ss_pred -Hh-----cCCCEEEeCCCCCCCCHHHH
Confidence 00 14799999999998876543
No 386
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.00 E-value=0.035 Score=48.53 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=37.2
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC-------CccCCHHHHHHHHHHHHhC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM-------ARLFTPKIASYYEEYYKSK 94 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l-------~~~~d~~~~~~~~~~l~~~ 94 (356)
.+|.|||.|++|+-+|..|++.|++|+.++..+... .++.++.+.+.+.+.++..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~ 62 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG 62 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc
Confidence 379999999999999999999999999998875421 1124566666666665543
No 387
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.99 E-value=0.075 Score=49.68 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=31.3
Q ss_pred CCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEee
Q 018416 37 CSGGNAVVIGGGY-IGMECAASLVINKINVTMVFP 70 (356)
Q Consensus 37 ~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~ 70 (356)
..+|+++|+|.|. +|--+|..|.+.|..||++++
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4789999999886 999999999999999999986
No 388
>PRK08275 putative oxidoreductase; Provisional
Probab=94.99 E-value=0.025 Score=57.98 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=34.2
Q ss_pred CcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
|+|.||+.++|++|++||+|||+.... .....|...|+.|+.++.
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~---------~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPH---------NYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCCchh---------HHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999975321 223456677777777664
No 389
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.95 E-value=0.039 Score=48.95 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=31.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEee
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFP 70 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~ 70 (356)
.+++++|||||.+|...+..|.+.|.+||++.+
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 689999999999999999999999999999964
No 390
>PLN02612 phytoene desaturase
Probab=94.94 E-value=0.039 Score=56.77 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=34.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l 75 (356)
.+++|+|||+|..|+-+|..|.+.|.+|+++|+++++.
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCC
Confidence 46789999999999999999999999999999987643
No 391
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.03 Score=52.45 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=34.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~ 77 (356)
++|.|||+|..|..+|..++..|++|+++++.+.-+.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 58999999999999999999999999999998775543
No 392
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=94.91 E-value=0.11 Score=49.16 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
..+...+.+.++++|++++.++.|++++. +++.+..|.+.+| ++.+|.||+|+|..
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~-~~~~~~~v~~~~g-~~~a~~vV~a~G~~ 192 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEI-RGEKVTAIVTPSG-DVQADQVVLAAGAW 192 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEe-eCCEEEEEEcCCC-EEECCEEEEcCChh
Confidence 56777888889999999999999999986 4555666776666 79999999999954
No 393
>PRK04148 hypothetical protein; Provisional
Probab=94.85 E-value=0.039 Score=45.50 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416 30 LVNVMKSCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73 (356)
Q Consensus 30 i~~~l~~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~ 73 (356)
|.+.+...+++++++||.| .|.++|..|++.|.+|+.++..+.
T Consensus 8 l~~~~~~~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 8 IAENYEKGKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred HHHhcccccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 4444444456789999999 999999999999999999986553
No 394
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=94.82 E-value=0.028 Score=61.04 Aligned_cols=46 Identities=24% Similarity=0.256 Sum_probs=35.1
Q ss_pred cCcEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
.|+|.||.+++|++|++||+|||+.... .....+.-.|+.|+.++.
T Consensus 361 ~GGi~vd~~~~T~v~GLfAaGE~a~~~~---------nsl~~a~v~G~~Ag~~a~ 406 (897)
T PRK13800 361 ASGVWVDEHARTTVPGLYAAGDLACVPH---------NYMIGAFVFGDLAGAHAA 406 (897)
T ss_pred cceEEecCCCcccCCCeEechhccCcch---------hhhhhHHHhHHHHHHHHH
Confidence 4789999999999999999999986432 233456667777777664
No 395
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.77 E-value=0.096 Score=51.93 Aligned_cols=83 Identities=23% Similarity=0.241 Sum_probs=60.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+++|+|+|-|-.|+.+|..|.++|.+|++.+..+.. .. +. ...+...+|++..+....
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~---~~-----~~~~~~~~i~~~~g~~~~------------ 64 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EG---LA-----AQPLLLEGIEVELGSHDD------------ 64 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cc---hh-----hhhhhccCceeecCccch------------
Confidence 4789999999999999999999999999999977654 21 11 113345577776553321
Q ss_pred EEeCCCcEEecCeEEEecCCCCCchhhhc
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTSLFEG 146 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~~ 146 (356)
-..-.+|.|+.++|..|...++..
T Consensus 65 -----~~~~~~d~vV~SPGi~~~~p~v~~ 88 (448)
T COG0771 65 -----EDLAEFDLVVKSPGIPPTHPLVEA 88 (448)
T ss_pred -----hccccCCEEEECCCCCCCCHHHHH
Confidence 112358999999999999886553
No 396
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=94.69 E-value=0.031 Score=53.61 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=30.5
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.|+|||+|.+|..+|..|++.|.+|+++||.
T Consensus 46 ~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 46 ADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred ccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 46999999999999999999999999999997
No 397
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.63 E-value=0.14 Score=51.60 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
..+.+.+.+.++++|+++++++.|++|.. +++++..+++.+|+++++|.||++.|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIIL-ENGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEe-cCCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 46778888899999999999999999986 4567778888899999999999998854
No 398
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.61 E-value=0.11 Score=52.49 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=63.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEE-eCCeeeEEEEcCCCcEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFV-KGTVLSSFDVDSNGKVV 116 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~-~~~~v~~i~~~~~g~v~ 116 (356)
++.+|+|+|+|.+|+-.+..+..+|.+|+++++++. - .+..++.|.++. .+.. +-....++..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~---------r----le~aeslGA~~v~i~~~--e~~~~~~gya- 227 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE---------V----AEQVESMGAEFLELDFE--EEGGSGDGYA- 227 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHH---------H----HHHHHHcCCeEEEeccc--cccccccchh-
Confidence 688999999999999999999999999888876543 1 234456787743 2321 1000011101
Q ss_pred EEEeCCC----------cE-EecCeEEEecCCC--CCchh-hhccccc-ccCcEEEe
Q 018416 117 AVNLRDG----------NR-LPTDMVVVGIGIR--PNTSL-FEGQLTL-EKGGIKVT 158 (356)
Q Consensus 117 ~v~~~~g----------~~-i~~D~vi~a~G~~--p~~~l-~~~~l~~-~~g~I~vd 158 (356)
.+++++ +. -.+|.+|-++|.. |...+ .++.+.. ..|++.||
T Consensus 228 -~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 228 -KVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred -hhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEE
Confidence 111121 01 2599999999963 23344 3555554 66777776
No 399
>PLN02568 polyamine oxidase
Probab=94.56 E-value=0.054 Score=55.38 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=33.9
Q ss_pred CCcEEEECCchHHHHHHHHHHHCC-----CcEEEEeeCCccCC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINK-----INVTMVFPEAHCMA 76 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G-----~~Vtlv~~~~~~l~ 76 (356)
..+|+|||+|..|+-+|..|++.| .+|+|+|+++++..
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GG 47 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGG 47 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCC
Confidence 468999999999999999999887 89999999877643
No 400
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.12 Score=49.61 Aligned_cols=92 Identities=15% Similarity=0.226 Sum_probs=60.4
Q ss_pred CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCccCCcc------CCHH---HHHHHHHHHHhCCCEEEeCCeeeEEE
Q 018416 40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHCMARL------FTPK---IASYYEEYYKSKGVKFVKGTVLSSFD 108 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~l~~~------~d~~---~~~~~~~~l~~~GV~v~~~~~v~~i~ 108 (356)
.+|.|||+|+.|+-.|..|.++ +++|+++|+.|.++.-. -.|+ ....+.+.++.....+.-|.+|-.
T Consensus 21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG~-- 98 (468)
T KOG1800|consen 21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGR-- 98 (468)
T ss_pred ceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceecc--
Confidence 4999999999999999998884 68999999998875310 0222 334455566666677766655411
Q ss_pred EcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 109 VDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 109 ~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
+ +.+.+ -+-.+|.|+++.|......
T Consensus 99 ---d-----vsl~e-L~~~ydavvLaYGa~~dR~ 123 (468)
T KOG1800|consen 99 ---D-----VSLKE-LTDNYDAVVLAYGADGDRR 123 (468)
T ss_pred ---c-----ccHHH-HhhcccEEEEEecCCCCcc
Confidence 1 11111 1235899999998654443
No 401
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.52 E-value=0.14 Score=42.24 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=32.2
Q ss_pred CCCCcEEEECCchHHHHHHHHHHHCCCc-EEEEeeC
Q 018416 37 CSGGNAVVIGGGYIGMECAASLVINKIN-VTMVFPE 71 (356)
Q Consensus 37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~-Vtlv~~~ 71 (356)
..+++++|+|+|-+|-.++..|...|.+ |+++.|.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3689999999999999999999999987 9999875
No 402
>PLN02676 polyamine oxidase
Probab=94.45 E-value=0.063 Score=54.22 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMA 76 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~ 76 (356)
...+|+|||+|+.|+-+|..|++.|. +|+++|+++++..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG 64 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGG 64 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCC
Confidence 45689999999999999999999998 6999999987654
No 403
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.41 E-value=0.76 Score=45.64 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=30.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCC--cEEEEeeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKI--NVTMVFPEA 72 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~--~Vtlv~~~~ 72 (356)
...+|+|+|+|..-++.-..|.++|. +||++.|..
T Consensus 195 ~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 195 ADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred CCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 35679999999999999999999987 589998874
No 404
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.38 E-value=0.16 Score=51.37 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
++.+++|+|+|.+|+..+..+..+|.+|+++++++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46799999999999999999999999999987754
No 405
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.37 E-value=0.14 Score=51.66 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=55.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+++++|+|.|.+|+.++..|.++|.+|++.+..+. . . +.+++.|+.+..+....
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~--------~----~-~~l~~~g~~~~~~~~~~------------ 65 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPD--------A----L-RPHAERGVATVSTSDAV------------ 65 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHH--------H----H-HHHHhCCCEEEcCcchH------------
Confidence 578999999999999999999999999999874321 1 1 23556788765432100
Q ss_pred EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
...-.+|.||.++|..|+...+.
T Consensus 66 -----~~l~~~D~VV~SpGi~~~~p~~~ 88 (488)
T PRK03369 66 -----QQIADYALVVTSPGFRPTAPVLA 88 (488)
T ss_pred -----hHhhcCCEEEECCCCCCCCHHHH
Confidence 00113699999999998877554
No 406
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=94.37 E-value=0.075 Score=52.37 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeCCccCCc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPEAHCMAR 77 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~~~~l~~ 77 (356)
...+|||||+|..|+-+|..|.+.|. +|+++|..+++..+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGR 60 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGR 60 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCce
Confidence 45689999999999999999997765 78999999988665
No 407
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=94.31 E-value=0.18 Score=50.12 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCc-----EEecCeEEEecCC
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGN-----RLPTDMVVVGIGI 137 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~-----~i~~D~vi~a~G~ 137 (356)
..+.+.+.+.+++.|+++++++.|++|+..+++.+..+++.+++ ++.+|.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 45677888888889999999999999986566767677776665 7999999999864
No 408
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=94.26 E-value=0.093 Score=46.49 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=59.5
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 119 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~ 119 (356)
+++.|+|.|.+|--+|..|++.|++|++-.++. ++-.+...+.+ +.. ++..+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~--------~~~~~a~a~~l---~~~---------i~~~~-------- 53 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRG--------PKALAAAAAAL---GPL---------ITGGS-------- 53 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCC--------hhHHHHHHHhh---ccc---------cccCC--------
Confidence 478999999999999999999999999986653 22222222222 222 21100
Q ss_pred eCCCcEEecCeEEEecCCCCCchhhhcccccccCcEEEec
Q 018416 120 LRDGNRLPTDMVVVGIGIRPNTSLFEGQLTLEKGGIKVTG 159 (356)
Q Consensus 120 ~~~g~~i~~D~vi~a~G~~p~~~l~~~~l~~~~g~I~vd~ 159 (356)
...-.-.+|.|++++.+....+.+.+......+.|++|.
T Consensus 54 -~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~ 92 (211)
T COG2085 54 -NEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDA 92 (211)
T ss_pred -hHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEec
Confidence 001123489999999988877776654333447899885
No 409
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.24 E-value=0.053 Score=54.83 Aligned_cols=34 Identities=24% Similarity=0.263 Sum_probs=30.5
Q ss_pred CcEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCc
Q 018416 40 GNAVVIGGGYIGMECAASLVIN--KINVTMVFPEAH 73 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~ 73 (356)
-.|+|||||.+|+-+|..|+++ |.+|+|+|+.+.
T Consensus 6 ~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~ 41 (494)
T PRK05257 6 TDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG 41 (494)
T ss_pred ceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 4799999999999999999985 789999998753
No 410
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.22 E-value=0.058 Score=51.37 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=33.5
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l 75 (356)
-++|.|||+|.+|..+|..++..|++|+++++.+...
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~ 43 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAE 43 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHH
Confidence 3789999999999999999999999999999877543
No 411
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=94.16 E-value=0.2 Score=50.62 Aligned_cols=57 Identities=21% Similarity=0.337 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
..+.+.+.+.+++.|+++++++.|++|.. +++++..|++.+|+++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~V~~~~g~~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIET-EGGRATAVHLADGERLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEe-eCCEEEEEEECCCCEEECCEEEECCcHH
Confidence 46778888889999999999999999986 4566667888899999999999988753
No 412
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.10 E-value=0.072 Score=49.82 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
++|.|||+|..|..+|..|++.|.+|+++++.+.-
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~ 38 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEA 38 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 58999999999999999999999999999987653
No 413
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=93.94 E-value=0.24 Score=42.60 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHH-hcCCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeC
Q 018416 22 RDLADANRLVNVM-KSCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 22 ~~~~da~~i~~~l-~~~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.+..-+.++.+.+ ....+++++|||+|- +|.-+|..|.++|.+|+++.|.
T Consensus 26 ~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 26 CTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred ChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3444455544443 245789999999997 5999999999999999999875
No 414
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=93.91 E-value=0.076 Score=51.71 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=32.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcE--EEEeeCCccC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINV--TMVFPEAHCM 75 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~V--tlv~~~~~~l 75 (356)
.+.+++|+|||.+|+.+|..|++++.++ |++|..+++.
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVG 49 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCccc
Confidence 5789999999999999999999998876 4588887763
No 415
>PRK08071 L-aspartate oxidase; Provisional
Probab=93.90 E-value=0.08 Score=53.79 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=38.8
Q ss_pred CcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416 153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 208 (356)
Q Consensus 153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 208 (356)
|+|.||.+.+|++|++||+|+|+... .+|..+.. .....+.-.|+.|++++...
T Consensus 333 GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 333 GGVKTNLDGETSIPGLYAIGEVACTG--VHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred CCEEECCCCcccCCCeEEcccccccc--cCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999997521 11222111 23467788899999988643
No 416
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.87 E-value=0.19 Score=50.52 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=54.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
.+|+++|+|.|-.|..+|..|.++|.+|++.+..+.. . .++. +.|++ ++.+..+..- .
T Consensus 7 ~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~--~--~~~~-----~~l~~-~~~~~~~~~~-------~----- 64 (468)
T PRK04690 7 EGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAV--E--AREV-----GALAD-AALLVETEAS-------A----- 64 (468)
T ss_pred CCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcc--c--chHH-----HHHhh-cCEEEeCCCC-------h-----
Confidence 4689999999999999999999999999998865431 1 1111 12444 3433322110 0
Q ss_pred EEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
...-.+|+||.++|..|+...+.
T Consensus 65 -----~~~~~~d~vV~SpgI~~~~p~~~ 87 (468)
T PRK04690 65 -----QRLAAFDVVVKSPGISPYRPEAL 87 (468)
T ss_pred -----HHccCCCEEEECCCCCCCCHHHH
Confidence 00124799999999999877554
No 417
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=93.83 E-value=0.079 Score=54.75 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=38.8
Q ss_pred cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416 152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 208 (356)
Q Consensus 152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 208 (356)
.|+|.||.+++|++|++||+|+|+... +.|..+.- .....|.-.|++|++++...
T Consensus 358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 358 MGGIETDQNCETRIKGLFAVGECSSVG--LHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred CCCEEECCCCccccCCEEecccccccc--cCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999997521 12322211 23456777888888887643
No 418
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.81 E-value=0.079 Score=54.24 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=39.8
Q ss_pred ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416 151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 208 (356)
Q Consensus 151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 208 (356)
..|+|.+|++.||++|++||+|+|+...+ |..+.- .....|...|++|+++++..
T Consensus 347 t~GGi~vd~~~~t~IpGLyAaGE~~gg~h---G~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 347 FMGGIRINEDCETNIPGLFACGEVAGGVH---GANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred ecCCEEECCCCcccCCCeEeccccccCCC---CCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 35889999999999999999999975322 221111 23456788899998888653
No 419
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.79 E-value=0.078 Score=44.96 Aligned_cols=32 Identities=34% Similarity=0.310 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
+|+|+|+|..|.-+|..|++.|.+|+|..|.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999997754
No 420
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.72 E-value=0.084 Score=49.40 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
++|.|||+|.+|..+|..|++.|.+|+++++.+.-
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~ 36 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQ 36 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHH
Confidence 57999999999999999999999999999887653
No 421
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=93.65 E-value=0.091 Score=49.02 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=30.9
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEeeCCccCCc
Q 018416 41 NAVVIGGGYIGMECAASLVINK-INVTMVFPEAHCMAR 77 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~~~l~~ 77 (356)
.++|||+|..|+-+|..|++.| .+|.|+|+++...+.
T Consensus 2 D~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~ 39 (296)
T PF00732_consen 2 DYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPE 39 (296)
T ss_dssp EEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTS
T ss_pred CEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccc
Confidence 4799999999999999999997 699999999876553
No 422
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.58 E-value=0.078 Score=54.29 Aligned_cols=55 Identities=24% Similarity=0.229 Sum_probs=38.0
Q ss_pred ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416 151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 207 (356)
..|+|.||+.++|++|++||+|||+... .+|..+.. .....+...|+.+++++..
T Consensus 356 t~GGi~vd~~~~t~i~GLyAaGe~~~~g--~hGa~~l~~~sl~~~~v~G~~ag~~aa~ 411 (541)
T PRK07804 356 SCGGVVTDVYGRTSVPGLYAAGEVACTG--VHGANRLASNSLLEGLVVGERAGAAAAA 411 (541)
T ss_pred cCCCEEECCCCcccCCCeEEcccccccc--cCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999997421 11221111 1234567778888888764
No 423
>PRK09077 L-aspartate oxidase; Provisional
Probab=93.52 E-value=0.095 Score=53.58 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=39.1
Q ss_pred cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416 152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 208 (356)
Q Consensus 152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 208 (356)
.|+|.||.+.||++|++||+|+|+... ..|..+.- .....|.-.|++|++++...
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTG--LHGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccc--cCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999997421 11222111 23457788899999988653
No 424
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.44 E-value=0.13 Score=46.36 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
++++++|||||.+|..=+..|.+.|.+||++.+.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5789999999999999999999999999999653
No 425
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.42 E-value=0.078 Score=49.98 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=32.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
+.|-|||+|..|.|.|..++++|+.|.|.++++.-
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k 38 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVK 38 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEccccc
Confidence 57899999999999999999999999999998653
No 426
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=93.42 E-value=0.12 Score=50.29 Aligned_cols=98 Identities=21% Similarity=0.333 Sum_probs=65.2
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEeeCCcc--CCccCCHHHH--------HHH---------------------
Q 018416 41 NAVVIGGGYIGMECAASLVIN--KINVTMVFPEAHC--MARLFTPKIA--------SYY--------------------- 87 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~~~~~--l~~~~d~~~~--------~~~--------------------- 87 (356)
.-+|||+|..+...+...... +.+|.+|...+++ |.+.++.++. ..+
T Consensus 180 p~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~Ffv 259 (659)
T KOG1346|consen 180 PYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDGFFV 259 (659)
T ss_pred ceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCccee
Confidence 369999998887776666544 5567777555432 1111222211 110
Q ss_pred ----HHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCCch
Q 018416 88 ----EEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 88 ----~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~~~ 142 (356)
......-||-+..+.++..+.. ++. .|.++||.+|.+|-+++|||.+|...
T Consensus 260 speDLp~~~nGGvAvl~G~kvvkid~-~d~---~V~LnDG~~I~YdkcLIATG~~Pk~l 314 (659)
T KOG1346|consen 260 SPEDLPKAVNGGVAVLRGRKVVKIDE-EDK---KVILNDGTTIGYDKCLIATGVRPKKL 314 (659)
T ss_pred ChhHCcccccCceEEEeccceEEeec-ccC---eEEecCCcEeehhheeeecCcCcccc
Confidence 1122345899999999999975 333 57789999999999999999999764
No 427
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=93.27 E-value=0.12 Score=53.50 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=38.6
Q ss_pred cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416 152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 208 (356)
Q Consensus 152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 208 (356)
.|+|.+|...+|++|++||+|+|+... ++|..+.- .....+.-.|++|+.++...
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G--~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASVG--LHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred CCCeeECcCcccccCCeEeeecccccC--cCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999997421 12222111 23456778888888887643
No 428
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.23 E-value=0.099 Score=43.00 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=29.3
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE 71 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~ 71 (356)
.++|+|+|.|-+|.++|..|++.|. ++++++..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999999 68998775
No 429
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.21 E-value=0.2 Score=49.92 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=53.7
Q ss_pred cEEEECCchHHHH-HHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEE
Q 018416 41 NAVVIGGGYIGME-CAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVN 119 (356)
Q Consensus 41 ~vvVvGgG~iGlE-~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~ 119 (356)
++.+||-|-+|+. +|..|.++|.+|++.+..+. + ..+.|++.||++..+.....
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~-------~-----~~~~l~~~gi~~~~g~~~~~------------- 55 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAEN-------A-----TTKRLEALGIPIYIGHSAEN------------- 55 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcc-------h-----HHHHHHHCcCEEeCCCCHHH-------------
Confidence 4789999999998 99999999999999886542 1 12346778998875421100
Q ss_pred eCCCcEEecCeEEEecCCCCCchhh
Q 018416 120 LRDGNRLPTDMVVVGIGIRPNTSLF 144 (356)
Q Consensus 120 ~~~g~~i~~D~vi~a~G~~p~~~l~ 144 (356)
+. .+|+||.+.|..|+...+
T Consensus 56 ~~-----~~d~vV~spgi~~~~p~~ 75 (448)
T TIGR01082 56 LD-----DADVVVVSAAIKDDNPEI 75 (448)
T ss_pred CC-----CCCEEEECCCCCCCCHHH
Confidence 11 279999999998876644
No 430
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=93.18 E-value=0.12 Score=52.09 Aligned_cols=56 Identities=25% Similarity=0.289 Sum_probs=40.2
Q ss_pred ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416 151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 208 (356)
Q Consensus 151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 208 (356)
..|+|.||...||++|++||+|+|+... ++|..+.. .....|.-.|+.|++++...
T Consensus 332 t~GGi~vd~~~~t~I~GLyAaGE~a~~g--~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 388 (488)
T TIGR00551 332 TCGGISVDDHGRTTVPGLYAIGEVACTG--LHGANRLASNSLLECLVFGWSAAEDISRR 388 (488)
T ss_pred ecCCEEECCCCcccCCCEEECccccccc--cCcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 4589999999999999999999997421 11222111 23457888899999988643
No 431
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.18 E-value=0.28 Score=48.57 Aligned_cols=78 Identities=22% Similarity=0.249 Sum_probs=53.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHH-hCCCEEEeCCeeeEEEEcCCCcEEEEE
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYK-SKGVKFVKGTVLSSFDVDSNGKVVAVN 119 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~-~~GV~v~~~~~v~~i~~~~~g~v~~v~ 119 (356)
++.|||-|-+|+-+|..|.++|.+|+..+..+.... . .. ...++ ..||++..+..... +
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~---~--~~---~~~~~~~~gi~~~~g~~~~~-----------~- 60 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEEL---E--PS---MGQLRLNEGSVLHTGLHLED-----------L- 60 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccc---h--hH---HHHHhhccCcEEEecCchHH-----------h-
Confidence 478999999999999999999999999987654211 1 00 11223 35888876532100 1
Q ss_pred eCCCcEEecCeEEEecCCCCCchhh
Q 018416 120 LRDGNRLPTDMVVVGIGIRPNTSLF 144 (356)
Q Consensus 120 ~~~g~~i~~D~vi~a~G~~p~~~l~ 144 (356)
-.+|+||.++|..|+...+
T Consensus 61 ------~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 61 ------NNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred ------ccCCEEEECCCCCCCCHHH
Confidence 1379999999998876644
No 432
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.12 E-value=0.18 Score=44.66 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE 71 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~ 71 (356)
..++|+|+|+|-.|.++|..|++.|. ++++++..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 56899999999999999999999999 69999887
No 433
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=93.09 E-value=0.12 Score=52.13 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=30.0
Q ss_pred CCcEEEECCchHHHHHHHHHHHC--CCcEEEEee
Q 018416 39 GGNAVVIGGGYIGMECAASLVIN--KINVTMVFP 70 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~--G~~Vtlv~~ 70 (356)
...|+|||||.+|+-+|..|++. +.+|+|+|+
T Consensus 6 ~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 6 SKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred cCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 34799999999999999999999 899999999
No 434
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=93.01 E-value=0.49 Score=47.20 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 80 TPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 80 d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
..++.+.+.+.++..|.++++++.|++|..++++++..|++.+|+++.|+.||......|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 3578888888889999999999999999875567778899999999999999998887765
No 435
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=92.82 E-value=0.17 Score=40.10 Aligned_cols=72 Identities=26% Similarity=0.300 Sum_probs=47.8
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeC
Q 018416 42 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLR 121 (356)
Q Consensus 42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~ 121 (356)
++|+|.|..|.+++..|.+.+.+|+++++.+. . .+.+++.|++++.+..... . .+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~---------~----~~~~~~~~~~~i~gd~~~~------~-----~l~ 56 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE---------R----VEELREEGVEVIYGDATDP------E-----VLE 56 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH---------H----HHHHHHTTSEEEES-TTSH------H-----HHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH---------H----HHHHHhcccccccccchhh------h-----HHh
Confidence 68999999999999999997779999987543 2 3456677887665432100 0 011
Q ss_pred CCcEEecCeEEEecCC
Q 018416 122 DGNRLPTDMVVVGIGI 137 (356)
Q Consensus 122 ~g~~i~~D~vi~a~G~ 137 (356)
.-..-.++.++++++.
T Consensus 57 ~a~i~~a~~vv~~~~~ 72 (116)
T PF02254_consen 57 RAGIEKADAVVILTDD 72 (116)
T ss_dssp HTTGGCESEEEEESSS
T ss_pred hcCccccCEEEEccCC
Confidence 1122368899998884
No 436
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=92.81 E-value=0.14 Score=52.78 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~ 73 (356)
.-.|||||+|..|+.+|..+++.|.+|+|+++.+.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~ 43 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 34799999999999999999999999999998764
No 437
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.79 E-value=0.13 Score=48.60 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=31.9
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
++|.|||+|.+|..+|..|++.|.+|+++++.+..
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~ 37 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAA 37 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHH
Confidence 47999999999999999999999999999987653
No 438
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=92.75 E-value=0.13 Score=51.19 Aligned_cols=38 Identities=16% Similarity=0.070 Sum_probs=34.6
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~ 77 (356)
-.|+|||+|..|+-+|..|++.|++|.++++.+....+
T Consensus 5 ~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~ 42 (443)
T PTZ00363 5 YDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGE 42 (443)
T ss_pred ceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcc
Confidence 36999999999999999999999999999999877554
No 439
>PRK08401 L-aspartate oxidase; Provisional
Probab=92.65 E-value=0.16 Score=50.95 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=39.3
Q ss_pred ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416 151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 207 (356)
..|+|.||...||++|++||+|+|+... .+|..+.. .....+...|+.|++++..
T Consensus 309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G--~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 309 TIGGISVDTFYRTGIKNLYAIGEAASNG--FHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cCCCEEECCCCcccCCCEEECccccccC--CCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999999999997421 12322211 2345677888999988864
No 440
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=92.65 E-value=0.12 Score=49.19 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
+..+|+|||+|.+|+.+|..|+++ .+||++|...++..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGG 44 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGG 44 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccC
Confidence 457899999999999999999987 79999999887653
No 441
>PRK09620 hypothetical protein; Provisional
Probab=92.53 E-value=0.5 Score=42.79 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=29.4
Q ss_pred CCCcEEEECC-----------------chHHHHHHHHHHHCCCcEEEEeeC
Q 018416 38 SGGNAVVIGG-----------------GYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 38 ~~~~vvVvGg-----------------G~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.+++|+|-+| |++|..+|..|.++|.+|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4678888765 899999999999999999999753
No 442
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.51 E-value=0.17 Score=45.68 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=31.1
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~ 73 (356)
++++|+|+|-.|..+|..|.+.|.+|+++++.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 4789999999999999999999999999987653
No 443
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=92.47 E-value=0.15 Score=42.28 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=29.4
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 42 AVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 42 vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
++|+|+|.++..++..++..|.+||+++.++..++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~~ 35 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERFP 35 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccccC
Confidence 58999999999999999999999999999876444
No 444
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.41 E-value=0.16 Score=47.57 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=32.1
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~ 73 (356)
-++|.|||+|..|..+|..|++.|.+|+++++.+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~ 38 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSAD 38 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 47899999999999999999999999999987654
No 445
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.34 E-value=0.2 Score=49.39 Aligned_cols=35 Identities=34% Similarity=0.391 Sum_probs=32.2
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
.+++|+|+|.|.+|..+|..++..|.+|+++++.+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 68999999999999999999999999999987654
No 446
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=92.27 E-value=0.19 Score=42.87 Aligned_cols=35 Identities=31% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
.+|+++|+|-|.+|--+|..|+.+|.+|++.+..|
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 68999999999999999999999999999998754
No 447
>PLN02976 amine oxidase
Probab=92.25 E-value=0.21 Score=55.98 Aligned_cols=40 Identities=23% Similarity=0.328 Sum_probs=35.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~ 77 (356)
..++++|||+|+.|+.+|..|.+.|.+|+++++++.+..+
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGr 731 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCc
Confidence 3578999999999999999999999999999998877554
No 448
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.24 E-value=0.21 Score=46.49 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=32.3
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCM 75 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l 75 (356)
+++.|||+|.+|..+|..|++.|.+|+++++.+..+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~ 39 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAV 39 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHH
Confidence 579999999999999999999999999998776543
No 449
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=92.19 E-value=0.15 Score=52.86 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=27.2
Q ss_pred cccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHc
Q 018416 159 GRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 159 ~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 206 (356)
...+|++|++||+|||+..... .++..+..+|.+++.++.
T Consensus 400 ~~~~T~i~gLyA~Ge~~~~~~h--------~l~~nsl~eg~~ag~~a~ 439 (614)
T TIGR02061 400 YNRMTTVEGLFTCGDGVGASPH--------KFSSGSFTEGRIAAKAAV 439 (614)
T ss_pred cCCccccCCEEeceecccCcch--------hhHHhHHHHHHHHHHHHH
Confidence 7889999999999999753210 234455556666665544
No 450
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=92.19 E-value=1.1 Score=43.67 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=36.6
Q ss_pred hCCCEEEeCCeeeEEEE------cCCCcEEEEEeCCCcEEecCeEEEecCCCCC
Q 018416 93 SKGVKFVKGTVLSSFDV------DSNGKVVAVNLRDGNRLPTDMVVVGIGIRPN 140 (356)
Q Consensus 93 ~~GV~v~~~~~v~~i~~------~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p~ 140 (356)
...|+++..+++..+.. ++++....+.++||..+.+|++|=+-|+...
T Consensus 165 ~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~ 218 (481)
T KOG3855|consen 165 SDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSV 218 (481)
T ss_pred cCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccch
Confidence 35788888887655543 4567777899999999999999888886543
No 451
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.18 E-value=0.47 Score=44.47 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=40.8
Q ss_pred CeEEeCCHHHHHHHH-HHHh----cCCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 17 NVCYLRDLADANRLV-NVMK----SCSGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 17 ~v~~l~~~~da~~i~-~~l~----~~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
++...++..-++... ..++ +..+++++|+|.|.+|..+|..|...|.+|+++.|.+
T Consensus 124 ~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 124 DVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred ceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 454455554444222 2222 2357899999999999999999999999999998864
No 452
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.10 E-value=0.33 Score=52.26 Aligned_cols=76 Identities=24% Similarity=0.186 Sum_probs=55.7
Q ss_pred CCcEEEECCchHHHHH-HHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEE
Q 018416 39 GGNAVVIGGGYIGMEC-AASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVA 117 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~-A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~ 117 (356)
-+++.|+|-|-+|+.. |..|.++|.+|+..+..+. +. .+.|++.||+++.+.....
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~-------~~-----~~~L~~~gi~~~~g~~~~~----------- 60 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG-------KT-----VEKLKAKGARFFLGHQEEH----------- 60 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC-------hH-----HHHHHHCCCEEeCCCCHHH-----------
Confidence 3579999999999998 9999999999999886532 11 2247778998876532100
Q ss_pred EEeCCCcEEecCeEEEecCCCCCchhh
Q 018416 118 VNLRDGNRLPTDMVVVGIGIRPNTSLF 144 (356)
Q Consensus 118 v~~~~g~~i~~D~vi~a~G~~p~~~l~ 144 (356)
+ -.+|+||.++|..|+...+
T Consensus 61 --~-----~~~d~vV~SpgI~~~~p~~ 80 (809)
T PRK14573 61 --V-----PEDAVVVYSSSISKDNVEY 80 (809)
T ss_pred --c-----CCCCEEEECCCcCCCCHHH
Confidence 1 1378999999998877644
No 453
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=92.03 E-value=0.2 Score=52.06 Aligned_cols=51 Identities=20% Similarity=0.191 Sum_probs=35.8
Q ss_pred CcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHc
Q 018416 153 GGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIM 206 (356)
Q Consensus 153 g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~ 206 (356)
|+|.+|...+|++|++||+|+|+... .|..+.- .....+...|+.|+.++.
T Consensus 371 gG~~~d~~~~t~i~gL~a~Ge~~~~~---hg~nrl~~~sl~~~~v~g~~Ag~~aa 422 (603)
T TIGR01811 371 GGLWVDYDQMTNIPGLFAAGECDFSQ---HGANRLGANSLLSAIADGYFALPFTI 422 (603)
T ss_pred CCeeECCCCcccCCCEEECcccccCc---CCCccchhHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999997532 2322211 233466677777777765
No 454
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.00 E-value=0.19 Score=51.94 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=38.7
Q ss_pred ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416 151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 207 (356)
..|+|.||.+.+|++|++||+|+|+... +|..+.. .....|.-.|++|+.++..
T Consensus 354 ~~GGi~vd~~~~t~I~GLyAaGE~~~g~---hGanrlggnsl~~~lv~Gr~Ag~~aa~ 408 (589)
T PRK08641 354 SMGGLWVDYDQMTNIPGLFAAGECDYSY---HGANRLGANSLLSAIYGGMVAGPNAVE 408 (589)
T ss_pred eCCCeEECCCCCeECCCEEECcccccCC---CCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999997532 2322221 2345677788888877653
No 455
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=91.99 E-value=0.22 Score=49.34 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=30.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.++|||+|..|+.+|..+++.|.+|++++++
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 36999999999999999999999999999976
No 456
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=91.98 E-value=1 Score=46.46 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCCC
Q 018416 85 SYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIRP 139 (356)
Q Consensus 85 ~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~p 139 (356)
..+....++.|..++.++.|+++.. .++....|++.-| .|++..++=|+|+-.
T Consensus 191 ~ala~~A~~~GA~viE~cpV~~i~~-~~~~~~gVeT~~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 191 QALARAASALGALVIENCPVTGLHV-ETDKFGGVETPHG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHhcCcEEEecCCcceEEe-ecCCccceeccCc-ceecceEEechhHHH
Confidence 3345566778999999999999976 3444447877776 589999999999644
No 457
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.92 E-value=0.55 Score=46.78 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=54.9
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCccCCHHHHHHHHHHHHh--CCCEEEeCC-eeeEEEEcCCCc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMARLFTPKIASYYEEYYKS--KGVKFVKGT-VLSSFDVDSNGK 114 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~~~d~~~~~~~~~~l~~--~GV~v~~~~-~v~~i~~~~~g~ 114 (356)
....++|+|-|-+|+.+|..|.++|.+|+..+..+. .+ . .+.|++ .||+++.+. ....
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~------~~-~----~~~l~~~~~g~~~~~~~~~~~~-------- 65 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQ------PP-G----LDTLAREFPDVELRCGGFDCEL-------- 65 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCC------ch-h----HHHHHhhcCCcEEEeCCCChHH--------
Confidence 356899999999999999999999999999987542 11 1 123454 377776431 1100
Q ss_pred EEEEEeCCCcEEecCeEEEecCCCCCchhhh
Q 018416 115 VVAVNLRDGNRLPTDMVVVGIGIRPNTSLFE 145 (356)
Q Consensus 115 v~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~ 145 (356)
+ -.+|.||+++|..|+...+.
T Consensus 66 ---~-------~~~d~vV~sp~i~~~~p~~~ 86 (448)
T PRK03803 66 ---L-------VQASEIIISPGLALDTPALR 86 (448)
T ss_pred ---h-------cCCCEEEECCCCCCCCHHHH
Confidence 0 13799999999988766443
No 458
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.91 E-value=0.27 Score=42.09 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=29.3
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
++.+++|+|+|.+|..++..|..+|.+|++++..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 5789999999999999999999999999999764
No 459
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.91 E-value=0.3 Score=42.25 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=32.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~ 73 (356)
.++++.|||.|.||-++|..|...|.+|..+.+...
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCC
Confidence 689999999999999999999999999999988764
No 460
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=91.91 E-value=0.4 Score=46.51 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCCC
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGIR 138 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~~ 138 (356)
..+...+.+.+++ |++++.++.|++++.+ ++. ..+++.+|..+.+|.||+|+|.-
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~ 189 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQ 189 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCcc
Confidence 4566777777888 9999999999999863 333 45777888889999999999954
No 461
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.88 E-value=0.19 Score=47.10 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=31.5
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~ 73 (356)
++|.|||+|.+|..+|..|++.|.+|+++++.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~ 37 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE 37 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 6899999999999999999999999999987654
No 462
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.84 E-value=0.23 Score=51.08 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=32.0
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
-.|+|||+|..|+-+|..+++.|.+|+|+++.+.+
T Consensus 8 ~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~ 42 (557)
T PRK07843 8 YDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHY 42 (557)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 36999999999999999999999999999997653
No 463
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=91.82 E-value=0.21 Score=51.38 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEe---CCCc--EEecCeEEEecCC
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNL---RDGN--RLPTDMVVVGIGI 137 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~---~~g~--~i~~D~vi~a~G~ 137 (356)
..+...+.+.+++.||+++.++.++++.. ++|++..+.. .+|+ .+.++.||+|+|.
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIH-DDGRVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEE-eCCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 45666777777788999999999999876 3566655443 3454 4778888888883
No 464
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=91.82 E-value=0.62 Score=46.93 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCC-----cEEecCeEEEecCCC
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDG-----NRLPTDMVVVGIGIR 138 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g-----~~i~~D~vi~a~G~~ 138 (356)
..+.+.+.+.++++|+++++++.|++|.. +++.+..+.+.++ +++.+|.||+++...
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~-~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHT-KGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEE-eCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 45788888999999999999999999987 3454445555554 578999999998753
No 465
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.78 E-value=0.13 Score=48.15 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=32.6
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAH 73 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~ 73 (356)
.+.+|+|+|||.+|.+.|....-.|.+||+++....
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~ 202 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNID 202 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHH
Confidence 456899999999999999999999999999988754
No 466
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.77 E-value=0.49 Score=41.40 Aligned_cols=35 Identities=34% Similarity=0.482 Sum_probs=31.3
Q ss_pred CCCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416 37 CSGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 37 ~~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
..+++++|+|+ |.+|..++..|.+.|.+|+++.|.
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 35789999996 999999999999999999999764
No 467
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.67 E-value=1.7 Score=41.53 Aligned_cols=98 Identities=23% Similarity=0.351 Sum_probs=65.9
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC---------c---------------------------cCCH--
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA---------R---------------------------LFTP-- 81 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~---------~---------------------------~~d~-- 81 (356)
=...|||||--|+-.|...+..|.+|-++|..-.+.. + .||-
T Consensus 21 fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW~~ 100 (478)
T KOG0405|consen 21 FDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDWKV 100 (478)
T ss_pred cceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCCcHHH
Confidence 3579999999999999999999999999987621100 0 0111
Q ss_pred -------H---HHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcE--EecCeEEEecCCCCCch
Q 018416 82 -------K---IASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNR--LPTDMVVVGIGIRPNTS 142 (356)
Q Consensus 82 -------~---~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~--i~~D~vi~a~G~~p~~~ 142 (356)
+ +-...++.|.+.+|+++.+.. ++. +++.+ .|+..||++ +.+..+++|+|.+|...
T Consensus 101 ik~krdayi~RLngIY~~~L~k~~V~~i~G~a--~f~--~~~~v-~V~~~d~~~~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 101 IKQKRDAYILRLNGIYKRNLAKAAVKLIEGRA--RFV--SPGEV-EVEVNDGTKIVYTAKHILIATGGRPIIP 168 (478)
T ss_pred HHhhhhHHHHHHHHHHHhhccccceeEEeeeE--EEc--CCCce-EEEecCCeeEEEecceEEEEeCCccCCC
Confidence 1 112234556667888887643 232 34443 577777753 67899999999887655
No 468
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.66 E-value=0.53 Score=38.97 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=28.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416 41 NAVVIGGGYIGMECAASLVINKI-NVTMVFPE 71 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~ 71 (356)
+|+|||.|-+|.++|..|.+.|. ++++++..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998 69999765
No 469
>PRK07512 L-aspartate oxidase; Provisional
Probab=91.65 E-value=0.22 Score=50.57 Aligned_cols=55 Identities=31% Similarity=0.314 Sum_probs=38.3
Q ss_pred cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCC
Q 018416 152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEP 208 (356)
Q Consensus 152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~ 208 (356)
.|+|.||...+|++|++||+|+|+... .+|..+.. .....+...|++|++++...
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G--~hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTG--LHGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccC--CCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999997321 11222111 23456777889988887653
No 470
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.63 E-value=0.46 Score=42.06 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=31.4
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCC-cEEEEeeC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKI-NVTMVFPE 71 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~-~Vtlv~~~ 71 (356)
..++|+|||.|-+|.++|..|++.|. +++++++.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 56899999999999999999999998 79999876
No 471
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=91.63 E-value=1.8 Score=41.96 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=32.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
..-.++|||+|+-|.-.|...+++|.+...++.+..+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~L 74 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTL 74 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCcc
Confidence 3468999999999999999999999999999986543
No 472
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=91.54 E-value=0.23 Score=46.58 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=32.5
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
-++|.|||+|.+|..+|..|+..|.+|+++++.+.-
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~ 39 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAA 39 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHH
Confidence 368999999999999999999999999999887653
No 473
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.43 E-value=0.22 Score=52.77 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=34.0
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
-++|.|||+|..|..+|..++..|++|++++..+.-+.
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~ 350 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLD 350 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 35799999999999999999999999999998876544
No 474
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.40 E-value=0.22 Score=52.78 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=33.5
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
++|.|||+|..|..+|..++..|++|++++..+.-+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~ 350 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALD 350 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 5799999999999999999999999999998876544
No 475
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.39 E-value=0.24 Score=50.25 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
+-++|.|||+|..|..+|..|++.|++|+++++.+..+.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~ 42 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALA 42 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 357899999999999999999999999999998876544
No 476
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.34 E-value=1 Score=42.18 Aligned_cols=51 Identities=22% Similarity=0.273 Sum_probs=39.9
Q ss_pred eCCHHHHHHHHHHHh-cCCCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeC
Q 018416 21 LRDLADANRLVNVMK-SCSGGNAVVIGGGY-IGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 21 l~~~~da~~i~~~l~-~~~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
-.|.....++.+... ...+++++|||.|. +|.-+|..|.++|..||++++.
T Consensus 139 PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 139 PCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred CCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 345555555555442 34789999999877 9999999999999999999864
No 477
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.28 E-value=0.47 Score=46.02 Aligned_cols=50 Identities=24% Similarity=0.390 Sum_probs=38.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc-------CCccCCHHHHHHHHHH
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC-------MARLFTPKIASYYEEY 90 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~-------l~~~~d~~~~~~~~~~ 90 (356)
++.|+|.|++|+-.|..|++.|++|+.++..+.- ..+.++|.+.+.+++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~ 58 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKEN 58 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhc
Confidence 6899999999999999999999999999876421 1224566665555443
No 478
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.21 E-value=0.36 Score=44.19 Aligned_cols=39 Identities=21% Similarity=0.217 Sum_probs=34.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMA 76 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~ 76 (356)
+..+++|+|+|.++..+|..+...|.+|++++.++...+
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~ 137 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFP 137 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCccccc
Confidence 456999999999999999999999999999998876443
No 479
>PRK06175 L-aspartate oxidase; Provisional
Probab=91.20 E-value=0.3 Score=48.55 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=39.5
Q ss_pred ccCcEEEecccccCCCCEEEEccccc-cCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416 151 EKGGIKVTGRLQSSNSSVYAVGDVAA-FPLKLLGETRRL-EHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 151 ~~g~I~vd~~l~ts~~~VyAiGD~~~-~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 207 (356)
..|+|.||...||+.|++||+|.|+. .. +|..+.. .....+.--|++|++++..
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~---hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGV---HGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCC---CccccchhHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999974 22 2222111 2345778889999998853
No 480
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=91.20 E-value=0.3 Score=50.27 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=38.3
Q ss_pred ccCcEEEecccccC-CCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416 151 EKGGIKVTGRLQSS-NSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 151 ~~g~I~vd~~l~ts-~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 207 (356)
..|+|.||.+.+|+ +|++||+|+|+... ..|..+.- .....+.-.|++|+.++..
T Consensus 345 ~~GGi~vd~~~~t~~IpGLyAaGE~a~~g--~hGanrlggnsl~~~~v~G~~Ag~~aa~ 401 (566)
T PRK06452 345 YMGGIDVDIDGRNPDIVGLFSAGEAACVS--VHGANRLGSNSLLDTLVFGQVTGRTVVQ 401 (566)
T ss_pred ecCCeEECCCCCcCCcCCeEecccccccC--CCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 36899999999995 99999999997521 11222111 1345677888888888754
No 481
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=91.15 E-value=0.27 Score=45.95 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=29.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
++.|||+|.+|.-+|..|++.|.+|+++.|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 6899999999999999999999999999874
No 482
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.14 E-value=0.63 Score=46.24 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=45.4
Q ss_pred CeEEeCCHHHHHHHHHHHhcC--CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 17 NVCYLRDLADANRLVNVMKSC--SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 17 ~v~~l~~~~da~~i~~~l~~~--~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
.++.+.+.++..++.+.+... ..++++|+|+|.+|..++..|.+.|.+|+++++.+
T Consensus 207 ~l~v~g~~~~l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 207 EVYFIGAREHIRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred EEEEEeCHHHHHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 456667777777777766532 35789999999999999999999999999997654
No 483
>PRK06849 hypothetical protein; Provisional
Probab=91.06 E-value=0.7 Score=45.10 Aligned_cols=64 Identities=8% Similarity=0.002 Sum_probs=48.4
Q ss_pred CCCcEEEECCch-HHHHHHHHHHHCCCcEEEEeeCCccC---------------CccCCHHHHHHHHHHHHhCCCEEEeC
Q 018416 38 SGGNAVVIGGGY-IGMECAASLVINKINVTMVFPEAHCM---------------ARLFTPKIASYYEEYYKSKGVKFVKG 101 (356)
Q Consensus 38 ~~~~vvVvGgG~-iGlE~A~~L~~~G~~Vtlv~~~~~~l---------------~~~~d~~~~~~~~~~l~~~GV~v~~~ 101 (356)
.+++|+|.|++. +|+++|..|.+.|++|++++..+..+ +..-++...+.+.+..++.+++++..
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vIP 82 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLIP 82 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 468999999886 89999999999999999998875321 22112446677778888888876643
No 484
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=91.06 E-value=0.2 Score=49.29 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=36.7
Q ss_pred cEEEecccccCCCCEEEEccccccCccccCcccccccHHHHHHHHHHHHHHHcC
Q 018416 154 GIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRLEHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 154 ~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g 207 (356)
.|.+|+.+.|+.+++|++||++.... .+..|...|..+|+.|+-
T Consensus 438 ri~~d~~~~t~i~gLy~aGdGAG~ar----------gI~~Aaa~Gi~~A~~i~~ 481 (486)
T COG2509 438 RIKVDEDLSTSIKGLYPAGDGAGLAR----------GIVSAAADGIKAAEGIAR 481 (486)
T ss_pred eEeecccceeeecceEEccccccccc----------hhHHHhhhhHHHHHHHHH
Confidence 57899999999999999999998753 356677888888888764
No 485
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.05 E-value=0.32 Score=47.74 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
.+++|+|+|.|.+|.-+|..++..|.+|+++++.+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 68999999999999999999999999999998654
No 486
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.91 E-value=0.26 Score=49.97 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=34.8
Q ss_pred CCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416 39 GGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77 (356)
Q Consensus 39 ~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~ 77 (356)
-++|.|||+|..|..+|..|++.|++|+++++.+..+.+
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~ 45 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAA 45 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence 478999999999999999999999999999988765443
No 487
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=90.87 E-value=0.34 Score=48.22 Aligned_cols=57 Identities=28% Similarity=0.307 Sum_probs=41.8
Q ss_pred ccCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcCCC
Q 018416 151 EKGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIMEPD 209 (356)
Q Consensus 151 ~~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g~~ 209 (356)
.-|+|.||.+.|||.|++||||.|+... +.|-.+.. ...-.+.--|..+|++|.+..
T Consensus 340 ~mGGI~vD~~GrTsi~gLYAiGEvA~TG--lHGANRLASNSLLE~vV~g~~aA~~i~~~~ 397 (518)
T COG0029 340 TMGGIAVDANGRTSIPGLYAIGEVACTG--LHGANRLASNSLLECLVFGKRAAEDIAGRL 397 (518)
T ss_pred ecccEEECCCCcccCcccEEeeeecccc--cccchhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 3589999999999999999999998743 22332221 233466778888999998753
No 488
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.85 E-value=0.52 Score=39.30 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCC-CcEEEEeeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINK-INVTMVFPEA 72 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G-~~Vtlv~~~~ 72 (356)
++++++|+|+|.+|..++..|.+.| .+|+++.+.+
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4689999999999999999999996 7888887653
No 489
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.84 E-value=0.25 Score=52.41 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=34.1
Q ss_pred CcEEEECCchHHHHHHHHHHHCCCcEEEEeeCCccCCc
Q 018416 40 GNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 77 (356)
Q Consensus 40 ~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~l~~ 77 (356)
++|.|||+|..|..+|..++..|++|+++++.+.-+.+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~ 373 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDR 373 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHH
Confidence 67999999999999999999999999999988765443
No 490
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=90.82 E-value=0.39 Score=42.88 Aligned_cols=34 Identities=35% Similarity=0.584 Sum_probs=31.7
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.+++|+|||||-.|..=|..|.+.|.+|+++.+.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 6899999999999999999999999999999654
No 491
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=90.76 E-value=0.3 Score=51.09 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=34.3
Q ss_pred cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHH
Q 018416 152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAA 204 (356)
Q Consensus 152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~ 204 (356)
.|+|.||...+|++|++||+|+|+... +|-.+.- .....+.-.|+.|+..
T Consensus 406 ~GGi~vd~~~~T~i~GLyAaGE~~~g~---HGanRL~~nsL~e~lv~G~~ag~~ 456 (640)
T PRK07573 406 MGGLWVDYNLMSTIPGLFVIGEANFSD---HGANRLGASALMQGLADGYFVLPY 456 (640)
T ss_pred cCCEEECCCCccccCCEEECccccccC---CCcccccchhHHHHHHHHHHHhHH
Confidence 478999999999999999999997543 2332221 1234566667766543
No 492
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.69 E-value=0.33 Score=47.26 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=31.8
Q ss_pred CCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeCC
Q 018416 38 SGGNAVVIGGGYIGMECAASLVINKINVTMVFPEA 72 (356)
Q Consensus 38 ~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~ 72 (356)
++++++|+|+|.+|..++..+.++|.+|+++++.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 56789999999999999999999999999998754
No 493
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=90.68 E-value=1.2 Score=40.39 Aligned_cols=34 Identities=26% Similarity=0.286 Sum_probs=30.5
Q ss_pred CCCcEEEECC-chHHHHHHHHHHHCCCcEEEEeeC
Q 018416 38 SGGNAVVIGG-GYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 38 ~~~~vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
.+|+++|.|+ |.+|..+|..|.+.|.+|.++.|.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 5789999985 999999999999999999988764
No 494
>PLN02815 L-aspartate oxidase
Probab=90.65 E-value=0.33 Score=50.28 Aligned_cols=54 Identities=26% Similarity=0.335 Sum_probs=38.1
Q ss_pred cCcEEEecccccCCCCEEEEccccccCccccCccccc-ccHHHHHHHHHHHHHHHcC
Q 018416 152 KGGIKVTGRLQSSNSSVYAVGDVAAFPLKLLGETRRL-EHVDSARKSAKHAVAAIME 207 (356)
Q Consensus 152 ~g~I~vd~~l~ts~~~VyAiGD~~~~~~~~~g~~~~~-~~~~~A~~~g~~aa~~i~g 207 (356)
-|+|.+|...||++|++||+|+|+... ++|..+.. .....+.-.|+.|+.++..
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G--~hGanrl~gnsl~e~lvfGr~Ag~~aa~ 431 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTG--LHGANRLASNSLLEALVFARRAVQPSID 431 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccC--CCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999997421 12222211 2345677788888888753
No 495
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=90.62 E-value=0.45 Score=42.09 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=31.5
Q ss_pred CCCCcEEEECCchHHHHHHHHHHHCCCcEEEEeeC
Q 018416 37 CSGGNAVVIGGGYIGMECAASLVINKINVTMVFPE 71 (356)
Q Consensus 37 ~~~~~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~ 71 (356)
..+++++|+|.|.+|.-+|..|.+.|.+|++.++.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36789999999999999999999999999987654
No 496
>PRK02106 choline dehydrogenase; Validated
Probab=90.60 E-value=0.31 Score=50.09 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=30.9
Q ss_pred cEEEECCchHHHHHHHHHHH-CCCcEEEEeeCCc
Q 018416 41 NAVVIGGGYIGMECAASLVI-NKINVTMVFPEAH 73 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~-~G~~Vtlv~~~~~ 73 (356)
.++|||+|..|+-+|..|++ .|.+|.++|+++.
T Consensus 7 D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 7 DYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred cEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 69999999999999999999 7999999999953
No 497
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=90.59 E-value=0.35 Score=49.40 Aligned_cols=34 Identities=29% Similarity=0.267 Sum_probs=31.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEeeCCcc
Q 018416 41 NAVVIGGGYIGMECAASLVINKINVTMVFPEAHC 74 (356)
Q Consensus 41 ~vvVvGgG~iGlE~A~~L~~~G~~Vtlv~~~~~~ 74 (356)
.|+|||+|+.|+-+|..|++.|.+|.++|++...
T Consensus 2 dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~ 35 (544)
T TIGR02462 2 DVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD 35 (544)
T ss_pred cEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 5899999999999999999999999999998543
No 498
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.59 E-value=0.71 Score=46.64 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 137 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 137 (356)
..+.+.+.+.++++|++|+++++|++|.. ++|+.+.+...+|+.+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v-~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILV-EGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEECCCceEEEEE-eCCcceEEeccccceeccceeEecCch
Confidence 45778889999999999999999999987 566556777777778999999998776
No 499
>PRK07233 hypothetical protein; Provisional
Probab=90.59 E-value=1 Score=44.15 Aligned_cols=55 Identities=24% Similarity=0.270 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCCEEEeCCeeeEEEEcCCCcEEEEEeCCCcEEecCeEEEecCC
Q 018416 81 PKIASYYEEYYKSKGVKFVKGTVLSSFDVDSNGKVVAVNLRDGNRLPTDMVVVGIGI 137 (356)
Q Consensus 81 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~~g~v~~v~~~~g~~i~~D~vi~a~G~ 137 (356)
..+.+.+.+.+++.|++++++++|++|+.+ ++.+..+ ..+++++++|.||++++.
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~-~~~~~~~-~~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVID-GGGVTGV-EVDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEc-CCceEEE-EeCCceEECCEEEECCCH
Confidence 457788888899999999999999999863 4444333 356778999999999974
No 500
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=90.58 E-value=0.41 Score=40.94 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=29.5
Q ss_pred EEEECC-chHHHHHHHHHHHCCCcEEEEeeCCc
Q 018416 42 AVVIGG-GYIGMECAASLVINKINVTMVFPEAH 73 (356)
Q Consensus 42 vvVvGg-G~iGlE~A~~L~~~G~~Vtlv~~~~~ 73 (356)
|+|+|+ |++|-.++..|.++|.+|+.+.|.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 689996 99999999999999999999999865
Done!