BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018417
(356 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P38355|YB8B_YEAST Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1
Length = 427
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW 73
++QV++I++ G A+ LL +++ ++ + +FTP L+F+ LAK++++ +I
Sbjct: 18 VLQVVIIALAGFWSASS--GLLPKQSQKIISLLNVDLFTPCLIFSKLAKSLSMAKIFEIA 75
Query: 74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNL-------LLIIVPA 126
+P+ +T I I G I+ ++L V+A GN +L L +P
Sbjct: 76 IIPIFFGLTTGISFISGKIMSRILDLDKDETNFVVANSVFGNSNSLPVSLTLSLAYTLPN 135
Query: 127 ICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY-QLIKQS 171
+ +Q P NRD +S G+ Y +G WS+ Y +L+K S
Sbjct: 136 LTWDQ-IPNDNRDNVASRGILYLLIFQQIGQMLRWSWGYNKLMKWS 180
>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
Length = 452
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 8/160 (5%)
Query: 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF 74
++V++I++ G ++A + L DA++ ++ + FTP L+F + + L+ +I
Sbjct: 24 LEVIVIALGGYVLAKK--GFLPRDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSL 81
Query: 75 MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGS- 133
+PV + ++ +++ KL R P A N +L L +V ++
Sbjct: 82 LPVFYVIISAASILISFLLAKLFRLTPRQRNFATACITFQNSNSLPLALVSSLATTVKDL 141
Query: 134 -----PFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168
P D +S G+ Y LG WSY Y+++
Sbjct: 142 LWDKIPDDTPDKVASRGIMYLLIFSQLGQALRWSYGYRIL 181
>sp|P53932|YNJ5_YEAST Uncharacterized transporter YNL095C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YNL095C PE=1 SV=1
Length = 642
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 97/229 (42%), Gaps = 17/229 (7%)
Query: 9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEE 68
V+ PI+++ LI +G LMA +LT +A R ++ +V TV PSL F + + ++
Sbjct: 12 VSVKPIIKIYLIIGVGFLMAKM--GILTVEATRIISDIVLTVLLPSLSFNKIVANIEDKD 69
Query: 69 IISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHL-EGLVIATCASGNLGNLLLIIVPAI 127
I S + ++ + F G + VV+L P P G ++A N+ +L + + ++
Sbjct: 70 IKSVGIICLSALLIFGSGFFFAY-VVRLFLPVPKQWYGGILAGGMFPNISDLPIAYLQSM 128
Query: 128 CHEQGSPFGNRDVCSSVGLSYASFSM------ALGGFFIWSYSYQLIKQSSVRYKALAQA 181
+QG F + V +M LGGF + ++ S +
Sbjct: 129 --DQGLVFSEEEGNKGVANVIIFLTMFLICIFNLGGFRLIESDFEYNDDESAVRVSETTK 186
Query: 182 AEPEEVPKEVNKD----FDANAQTQLLRGTTDDQEDVSVLVASTKSSSD 226
+P N D F +N Q QL ++ ++ + + ++D
Sbjct: 187 TQPAVSANTTNTDTSERFFSNEQ-QLFNNKYTARDSLTEAIGTKGENAD 234
>sp|Q58437|Y1031_METJA Uncharacterized transporter MJ1031 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1031 PE=3 SV=1
Length = 308
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 29 TQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGI 88
++ + +L + + LN +V + PS +F +++K V+ +I+ + +PV + + L GI
Sbjct: 20 SKIFGILKEEHAKILNNIVIYIAMPSTIFLTISKNVSSSQILEFLKLPVVIFLCCLFVGI 79
Query: 89 LGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQG 132
L +++ K + + K G +I GN G L + + E+G
Sbjct: 80 LAYLLGKHIFKLKDEKLGGLILVSMLGNTGFLGYPVALGMFGEEG 124
>sp|Q99252|ECM3_YEAST Protein ECM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=ECM3 PE=1 SV=1
Length = 613
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 26/244 (10%)
Query: 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW 72
PI+++ LI +G N+LT A RS++ +V T+ P L F + + +I
Sbjct: 16 PIIKIYLI--IGVGFGLCKMNILTVQATRSISDIVLTILLPCLSFNKIVANIEDNDIKDV 73
Query: 73 WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQG 132
+ + + F G +IV +L G ++A N+ +L + + ++ +QG
Sbjct: 74 GIICLTSVILFATGLGFAFIVRSVLPVPKRWRGGILAGGMFPNISDLPIAYLQSM--DQG 131
Query: 133 SPFGNRDVCSSVGLSYASFSMALGGFFIWSYS---YQLIKQSSVRYKALAQAAEPEEVPK 189
F + V A+ + L F I ++ ++LI ++ YK + EE
Sbjct: 132 FIFTEAEGEKGV----ANVIIFLAMFLICVFNLGGFRLI-ENDFHYK----GDDDEE--N 180
Query: 190 EVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKR 249
+ D A TQ + G + + +L +S+ VP +S E K
Sbjct: 181 TLTNDDSAQQPTQPIEGNSSSSSNQDILKEPNEST--------VPNSSQASYISEKNKKE 232
Query: 250 SLEF 253
E
Sbjct: 233 KTEL 236
>sp|A1T741|IDI2_MYCVP Isopentenyl-diphosphate delta-isomerase OS=Mycobacterium
vanbaalenii (strain DSM 7251 / PYR-1) GN=fni PE=3 SV=1
Length = 342
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 113 SGNLGNLL----LIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168
SG++G L I P + E G G VG A+ +A G W+ Q +
Sbjct: 175 SGSIGRLCDVAGAIGYPVVLKEVGHGIGAAAAAELVGCPIAAIDVAGAGGTSWARIEQFV 234
Query: 169 KQSSVRYKALAQ 180
+ VRY ALA+
Sbjct: 235 RYGDVRYPALAE 246
>sp|Q54PT1|GDAP2_DICDI Protein GDAP2 homolog OS=Dictyostelium discoideum GN=gdap2 PE=3
SV=1
Length = 568
Score = 31.6 bits (70), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 192 NKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKRSL 251
N+ A QT L R +D DVS L + +++ D I+V S L +RK+ + + L
Sbjct: 382 NEKLKAQFQTLLTRSKVEDLSDVSRLNFTLQTTDDQNRPIVVIIGSQLNSRKD-LYDQVL 440
Query: 252 EFLHQLLEELLAPPTLAAI 270
+L ++LE+ + + I
Sbjct: 441 LYLIRVLEQTIQRGNFSII 459
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,310,764
Number of Sequences: 539616
Number of extensions: 4905914
Number of successful extensions: 15726
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 15714
Number of HSP's gapped (non-prelim): 18
length of query: 356
length of database: 191,569,459
effective HSP length: 118
effective length of query: 238
effective length of database: 127,894,771
effective search space: 30438955498
effective search space used: 30438955498
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)