Query 018417
Match_columns 356
No_of_seqs 189 out of 1024
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018417.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018417hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 7.2E-50 1.6E-54 383.8 13.2 304 1-353 2-313 (408)
2 PF03547 Mem_trans: Membrane t 100.0 2.5E-36 5.5E-41 299.0 24.8 295 9-348 1-300 (385)
3 TIGR00946 2a69 he Auxin Efflux 100.0 5.1E-28 1.1E-32 235.4 20.9 225 6-346 2-232 (321)
4 PRK09903 putative transporter 100.0 4.2E-27 9.1E-32 228.6 22.7 221 7-347 2-224 (314)
5 COG0679 Predicted permeases [G 100.0 8.1E-27 1.8E-31 226.6 21.3 214 7-345 2-217 (311)
6 TIGR00841 bass bile acid trans 96.9 0.018 4E-07 55.5 13.6 105 14-127 140-248 (286)
7 COG0385 Predicted Na+-dependen 95.8 0.23 5E-06 48.8 13.8 148 2-169 158-306 (319)
8 PF13593 DUF4137: SBF-like CPA 95.0 0.43 9.3E-06 46.8 12.6 108 15-127 165-279 (313)
9 TIGR00832 acr3 arsenical-resis 94.7 0.5 1.1E-05 46.6 12.3 50 77-127 250-299 (328)
10 COG3329 Predicted permease [Ge 92.3 9.9 0.00021 37.3 16.1 21 259-279 213-233 (372)
11 PF05684 DUF819: Protein of un 89.5 9.6 0.00021 38.4 14.0 83 11-96 22-108 (378)
12 TIGR00783 ccs citrate carrier 81.2 14 0.00029 37.0 10.2 88 17-107 207-300 (347)
13 TIGR00807 malonate_madL malona 80.2 17 0.00037 30.7 8.8 80 15-98 38-117 (125)
14 PF03817 MadL: Malonate transp 72.0 32 0.00069 29.2 8.3 79 15-97 38-116 (125)
15 PF11299 DUF3100: Protein of u 64.8 70 0.0015 30.3 9.9 89 14-102 21-113 (241)
16 COG5505 Predicted integral mem 64.1 60 0.0013 32.1 9.6 86 31-119 47-136 (384)
17 KOG2532 Permease of the major 61.4 62 0.0013 33.5 10.0 59 100-171 158-218 (466)
18 PF03616 Glt_symporter: Sodium 60.7 1.5E+02 0.0033 29.7 12.3 83 80-172 101-187 (368)
19 PF05684 DUF819: Protein of un 59.6 2E+02 0.0044 29.0 14.0 133 15-166 241-374 (378)
20 PRK04972 putative transporter; 51.3 2.2E+02 0.0048 30.2 12.3 164 12-180 12-197 (558)
21 TIGR03802 Asp_Ala_antiprt aspa 48.1 1.3E+02 0.0028 32.0 10.0 153 11-171 9-187 (562)
22 KOG1965 Sodium/hydrogen exchan 47.0 49 0.0011 35.2 6.4 76 11-86 38-140 (575)
23 KOG1650 Predicted K+/H+-antipo 44.6 1.8E+02 0.004 32.2 10.7 94 31-127 295-388 (769)
24 PF03956 DUF340: Membrane prot 43.0 88 0.0019 28.5 6.8 48 65-114 47-95 (191)
25 PF03390 2HCT: 2-hydroxycarbox 42.7 3.2E+02 0.007 28.1 11.3 79 26-107 283-367 (414)
26 COG3493 CitS Na+/citrate sympo 39.7 3.8E+02 0.0082 27.5 11.0 90 16-108 292-387 (438)
27 PF09971 DUF2206: Predicted me 37.9 2.6E+02 0.0057 28.1 9.8 115 2-121 111-238 (367)
28 COG3493 CitS Na+/citrate sympo 36.3 4.9E+02 0.011 26.7 14.0 93 31-124 91-192 (438)
29 PRK03818 putative transporter; 35.5 5.7E+02 0.012 27.2 14.7 93 73-172 91-186 (552)
30 TIGR00783 ccs citrate carrier 35.0 4.4E+02 0.0095 26.5 10.7 95 31-126 5-108 (347)
31 COG2991 Uncharacterized protei 34.4 32 0.0007 26.5 2.1 28 5-34 2-29 (77)
32 PRK05326 potassium/proton anti 32.5 2.4E+02 0.0052 29.8 9.0 53 17-72 247-299 (562)
33 PRK12460 2-keto-3-deoxyglucona 32.3 2.7E+02 0.0057 27.6 8.6 100 15-123 167-267 (312)
34 PF03390 2HCT: 2-hydroxycarbox 31.5 5.9E+02 0.013 26.2 14.0 102 22-126 67-177 (414)
35 TIGR03802 Asp_Ala_antiprt aspa 31.2 6.7E+02 0.014 26.7 14.1 125 15-157 420-549 (562)
36 PF03977 OAD_beta: Na+-transpo 30.5 4.1E+02 0.0088 26.7 9.5 82 13-97 211-297 (360)
37 COG4794 EscS Type III secretor 29.0 90 0.0019 25.0 3.8 50 262-320 22-71 (89)
38 COG2855 Predicted membrane pro 28.7 6E+02 0.013 25.4 11.7 119 38-171 62-181 (334)
39 KOG2533 Permease of the major 27.2 7.4E+02 0.016 25.9 12.5 20 12-33 318-337 (495)
40 PF11045 YbjM: Putative inner 25.0 1.1E+02 0.0023 26.2 3.9 44 265-317 64-107 (125)
41 PF11120 DUF2636: Protein of u 24.8 1.2E+02 0.0025 22.8 3.6 26 1-29 1-26 (62)
42 PF04531 Phage_holin_1: Bacter 24.1 2.4E+02 0.0052 22.1 5.5 22 260-281 7-28 (84)
43 PF12794 MscS_TM: Mechanosensi 23.7 7.1E+02 0.015 24.5 18.8 53 44-100 129-181 (340)
44 PLN03159 cation/H(+) antiporte 23.6 9.7E+02 0.021 26.9 12.1 85 37-124 313-400 (832)
45 PF04235 DUF418: Protein of un 22.1 5E+02 0.011 22.2 9.8 89 11-101 59-151 (163)
46 COG0798 ACR3 Arsenite efflux p 21.6 8.3E+02 0.018 24.5 11.9 47 80-127 254-300 (342)
47 PRK01844 hypothetical protein; 21.4 1.6E+02 0.0035 22.7 3.9 24 73-96 4-27 (72)
48 TIGR00831 a_cpa1 Na+/H+ antipo 21.2 5.2E+02 0.011 27.1 9.0 52 17-73 25-76 (525)
49 PRK01658 holin-like protein; V 21.2 4.8E+02 0.01 22.0 7.2 54 41-98 60-115 (122)
50 COG5505 Predicted integral mem 20.4 3.9E+02 0.0084 26.7 7.1 80 39-127 270-349 (384)
51 KOG3614 Ca2+/Mg2+-permeable ca 20.4 6.4E+02 0.014 29.9 9.8 85 78-170 931-1040(1381)
52 COG3763 Uncharacterized protei 20.1 1.8E+02 0.004 22.3 3.9 23 73-95 4-26 (71)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=7.2e-50 Score=383.81 Aligned_cols=304 Identities=51% Similarity=0.932 Sum_probs=240.5
Q ss_pred CChHHHHHHHH--HHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHH
Q 018417 1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN 78 (356)
Q Consensus 1 m~~~~~~~~~l--~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~ 78 (356)
|++++.+..+- ..+++++++..+||++++++.|+++++++|.+|++++++|+|||||+.+++++|.+++.++|++|+.
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 67777666555 7899999999999999966679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHH
Q 018417 79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 158 (356)
Q Consensus 79 ~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~i 158 (356)
..++.+++.++||++.|++|.|++.|+..+.+|+|+|+|+||+.++.++|++++.|||+.+.|..+|+.|+++++.+..+
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcChh-hhHhhhhc---CCCCCCc-ccccccccchhhhhhccCCCCCcccchhhhccCCCCCCCcccccc
Q 018417 159 FIWSYSYQLIKQSSV-RYKALAQA---AEPEEVP-KEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIV 233 (356)
Q Consensus 159 l~wT~G~~ll~~~~~-~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (356)
++|||+|.++.+... .....+++ .+.+.++ +.+++|++++.+.++....++++ ++.
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~-----------------~~~-- 222 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRN-----------------NQV-- 222 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCC-----------------Cce--
Confidence 999999997765532 11111110 0000011 11112222211111111111111 000
Q ss_pred ccccchhhhhhhhhHHHHH-HHHHHHHhhhChHHHHHHHHHHHHhhhhHhHhhcCCCCcchhHHHHHHHhchhhhhhhhh
Q 018417 234 PQASHLQTRKESFWKRSLE-FLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFY 312 (356)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl~~i~~~~~~lG~~~~~~~~~ 312 (356)
..++.+..+|.+. ..+..+|.+++||++|+++|++++++||||+++|++++|+++++|+++.+|
T Consensus 223 ------~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG--------- 287 (408)
T KOG2722|consen 223 ------VGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLG--------- 287 (408)
T ss_pred ------eeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhc---------
Confidence 0011111111111 123457899999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccCCCcchhHHHHHHHhHcccCccccccCC
Q 018417 313 CFVGWLATSSFSYCRDGTIPCITLILGGNLIQGENTTLSNF 353 (356)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~vPl~llilG~~L~~~~~~~~~~~ 353 (356)
++++||+|++||+||.+|+..|....
T Consensus 288 ---------------~~~IP~illvLGgnL~~g~~ss~~~~ 313 (408)
T KOG2722|consen 288 ---------------DGAIPCILLVLGGNLIQGLRSSALKT 313 (408)
T ss_pred ---------------cccchhhhhhhccccccCchhcccCc
Confidence 99999999999999999998776543
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=2.5e-36 Score=299.05 Aligned_cols=295 Identities=27% Similarity=0.498 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018417 9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGI 88 (356)
Q Consensus 9 ~~l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~~l 88 (356)
+++++++|+++++++||+++ |+|+++++..+.+|++++++++|||+|++++++.+.+++.++|.+++.+++.++++++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLL 78 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 36789999999999999999 9999999999999999999999999999999987889999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 018417 89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168 (356)
Q Consensus 89 l~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~wT~G~~ll 168 (356)
+++++.|++|.++++++.+..+++|+|++++|+|+++++ ||+ +|..|+++|.++++++.|++|+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l-------~g~------~~~~~~~~~~~~~~i~~~~~~~~l~ 145 (385)
T PF03547_consen 79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQAL-------FGE------RGVAYAIIFDVVNNIILWSLGYFLL 145 (385)
T ss_pred HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHH-------hcc------hhhhhehHHHHhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999 886 7999999999999999999999999
Q ss_pred hcChhhhHhhhhcC-CCCCCcc-cccccccchhhh-hhccCCCCCcccchhhhccCCCCCCCcccc-ccccccchhhhhh
Q 018417 169 KQSSVRYKALAQAA-EPEEVPK-EVNKDFDANAQT-QLLRGTTDDQEDVSVLVASTKSSSDPECQI-IVPQASHLQTRKE 244 (356)
Q Consensus 169 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 244 (356)
+.++++.+..++++ +.++..+ ++++++...+.+ +...+++.++++..... +..++++..... ..++.+.....+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (385)
T PF03547_consen 146 ESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSST-PSQSSASAPSSVSTSPSPSNSTGAEQ 224 (385)
T ss_pred cccccccccccccccccccccccccCCccccCCcccccccccccccCCccccc-ccccccccchhhccCCcccccchhhh
Confidence 86644322211110 0000000 000000000000 00000000000100000 000000000000 0011111111111
Q ss_pred hhhHHHHHHH-HHHHHhhhChHHHHHHHHHHHHhhhhHhHhhcCCCCcchhHHHHHHHhchhhhhhhhhhhccccccccc
Q 018417 245 SFWKRSLEFL-HQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSF 323 (356)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl~~i~~~~~~lG~~~~~~~~~~~~~~~~~~~~ 323 (356)
+.+++.++.. +..++.++|||++|+++|++++++|+.+++++. .++.++++++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg-------------------- 279 (385)
T PF03547_consen 225 KSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLG-------------------- 279 (385)
T ss_pred hhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHH--------------------
Confidence 2222222222 233678999999999999999999998876554 69999999999
Q ss_pred ccCCCcchhHHHHHHHhHcccCccc
Q 018417 324 SYCRDGTIPCITLILGGNLIQGENT 348 (356)
Q Consensus 324 ~~~~~~~vPl~llilG~~L~~~~~~ 348 (356)
++++|++|+++|++|++++.+
T Consensus 280 ----~~~~pl~l~~lG~~l~~~~~~ 300 (385)
T PF03547_consen 280 ----AAAVPLALFVLGASLARGPRK 300 (385)
T ss_pred ----hhhHHHHHHHHHHHHhcCCcc
Confidence 999999999999999987654
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.96 E-value=5.1e-28 Score=235.39 Aligned_cols=225 Identities=19% Similarity=0.209 Sum_probs=178.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Q 018417 6 FFEVASMPIVQVLLISVLGALM-ATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFL 84 (356)
Q Consensus 6 ~~~~~l~~vl~vflli~vG~~l-~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~l 84 (356)
+++..+++++|+++++++||++ + |+|+++++..+.+|++++|+++||++|+++.+....+.....+...+......+
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999 9 999999999999999999999999999999986322123333444444556667
Q ss_pred HHHHHHHHHHH-HhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhh---HHHHHHHHHHhHHHH
Q 018417 85 IGGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVG---LSYASFSMALGGFFI 160 (356)
Q Consensus 85 l~~ll~~lv~r-l~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g---~~Y~~iy~iv~~il~ 160 (356)
..++++|.+.| .+|.++++++.+.+++.|+|++|+|+|+++++ ||+ +| +.|+..+.+.++++.
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~------~~~~~~~~~~~~~~~~~~~~ 146 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGE------EGAKILIAALFIDTGAVLMT 146 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcc------cchhhhHHHHHHHhccchhH
Confidence 78889999998 77888899999999999999999999999999 997 35 788899999999999
Q ss_pred HHHHHHHHhcChhhhHhhhhcCCCCCCcccccccccchhhhhhccCCCCCcccchhhhccCCCCCCCccccccccccchh
Q 018417 161 WSYSYQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQ 240 (356)
Q Consensus 161 wT~G~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (356)
|++|+.+.....++. + +
T Consensus 147 ~~~~~~~~~~~~~~~----~--------------------------------~--------------------------- 163 (321)
T TIGR00946 147 IALGLFLVSEDGAGG----E--------------------------------G--------------------------- 163 (321)
T ss_pred HHHHHHHhccccccc----c--------------------------------c---------------------------
Confidence 999988764321100 0 0
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhhhHhHhhcCCCCcc-hhHHHHHHHhchhhhhhhhhhhccccc
Q 018417 241 TRKESFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGYVFVSAQFYCFVGWLA 319 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl-~~i~~~~~~lG~~~~~~~~~~~~~~~~ 319 (356)
+.++.++..+ +...+.++||+++|.++|+++...++ ++ .++.++++++|
T Consensus 164 -~~~~~~~~~~---~~~~~~~~nP~iia~i~Gl~~~~~~i----------~lP~~l~~~l~~lg---------------- 213 (321)
T TIGR00946 164 -SGESTRLMLI---FVWKKLIKFPPLWAPLLSVILSLVGF----------KMPGLILKSISILS---------------- 213 (321)
T ss_pred -cchhHHHHHH---HHHHHHHhCCChHHHHHHHHHHHHhh----------cCcHHHHHHHHHHH----------------
Confidence 0001111111 11235678999999999999999985 44 59999999999
Q ss_pred ccccccCCCcchhHHHHHHHhHcccCc
Q 018417 320 TSSFSYCRDGTIPCITLILGGNLIQGE 346 (356)
Q Consensus 320 ~~~~~~~~~~~vPl~llilG~~L~~~~ 346 (356)
++++|++|+++|+.+....
T Consensus 214 --------~~~~plaLl~lG~~l~~~~ 232 (321)
T TIGR00946 214 --------GATTPMALFSLGLALSPRK 232 (321)
T ss_pred --------HHHHHHHHHHHHHhhChhh
Confidence 9999999999999998543
No 4
>PRK09903 putative transporter YfdV; Provisional
Probab=99.95 E-value=4.2e-27 Score=228.61 Aligned_cols=221 Identities=16% Similarity=0.216 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 018417 7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (356)
Q Consensus 7 ~~~~l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~ 86 (356)
+...+++++|+|+++++||+++ |+|++++++.+.+|++++|+++||++|+++.+. +.+++...+...+..++.++++
T Consensus 2 ~~~~~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (314)
T PRK09903 2 LTFFIGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGC 78 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHH
Confidence 3456788999999999999999 999999999999999999999999999999886 5665553344456667777788
Q ss_pred HHHHHHHHH-HhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 018417 87 GILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY 165 (356)
Q Consensus 87 ~ll~~lv~r-l~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~wT~G~ 165 (356)
+++++++.| .+|.++++++.....+.++|+||+|+|+++++ ||++. ..|+.|+..+. +.+++.|++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~---~~~~~~a~~~~-~~~~~~~~~g~ 147 (314)
T PRK09903 79 FFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSV---STGLVVAIISI-IVNAITIPIGL 147 (314)
T ss_pred HHHHHHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchh---hhhhHHHHHHH-HHHHHHHHHHH
Confidence 888888876 55667677788889999999999999999999 99731 01565666554 57999999999
Q ss_pred HHHhcChhhhHhhhhcCCCCCCcccccccccchhhhhhccCCCCCcccchhhhccCCCCCCCccccccccccchhhhhhh
Q 018417 166 QLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKES 245 (356)
Q Consensus 166 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (356)
++++..+.+ + + + ++.
T Consensus 148 ~~~~~~~~~--~--~--------------------------------~-----------------------------~~~ 162 (314)
T PRK09903 148 YLLNPSSGA--D--G--------------------------------K-----------------------------KNS 162 (314)
T ss_pred HHHcccccc--c--c--------------------------------c-----------------------------cch
Confidence 998643210 0 0 0 001
Q ss_pred hhHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhhhHhHhhcCCCCcc-hhHHHHHHHhchhhhhhhhhhhcccccccccc
Q 018417 246 FWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGYVFVSAQFYCFVGWLATSSFS 324 (356)
Q Consensus 246 ~~~~~~~~~~~~~~~~~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl-~~i~~~~~~lG~~~~~~~~~~~~~~~~~~~~~ 324 (356)
.++ ..++.+.||+++|.++|+++.+.+. ++ .++.++++++|
T Consensus 163 ~~~-------~l~~~~~nP~iia~~~gl~~~l~~i----------~lP~~i~~~l~~lg--------------------- 204 (314)
T PRK09903 163 NLS-------ALISAAKEPVVWAPVLATILVLVGV----------KIPAAWDPTFNLIA--------------------- 204 (314)
T ss_pred HHH-------HHHHHHhchHHHHHHHHHHHHHcCC----------CCCHHHHHHHHHHH---------------------
Confidence 111 2235688999999999999988763 45 59999999999
Q ss_pred cCCCcchhHHHHHHHhHcccCcc
Q 018417 325 YCRDGTIPCITLILGGNLIQGEN 347 (356)
Q Consensus 325 ~~~~~~vPl~llilG~~L~~~~~ 347 (356)
++++|++|+.+|++|++.+.
T Consensus 205 ---~~~~PlaL~~iG~~L~~~~~ 224 (314)
T PRK09903 205 ---KANSGVAVFAAGLTLAAHKF 224 (314)
T ss_pred ---HHHHHHHHHHHHHHHhhccc
Confidence 99999999999999988644
No 5
>COG0679 Predicted permeases [General function prediction only]
Probab=99.95 E-value=8.1e-27 Score=226.62 Aligned_cols=214 Identities=22% Similarity=0.349 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 018417 7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (356)
Q Consensus 7 ~~~~l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~ 86 (356)
+..++..++|+++++++||+++ |.+.++++..+.+|++++|+++|||+|+++.++. .+...+...+. ..+...++.
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~-~~~~~~~~~~~-~~~~~~~~~ 77 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATAD-LSGLADLGLIV-ASLVATLLA 77 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCC-cchhhhHHHHH-HHHHHHHHH
Confidence 4567889999999999999999 9999999999999999999999999999999973 33333444333 345555555
Q ss_pred HHHHHHHHHH-hCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHHHHHHH
Q 018417 87 GILGWIVVKL-LRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY 165 (356)
Q Consensus 87 ~ll~~lv~rl-~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~wT~G~ 165 (356)
.++.+++.|. ++.++++++.+..+.+|+|+|++|+|+...+ ||+ +|+.|+++|....++..|++|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~G~------~gl~~~~i~~~~~~~~~~~~g~ 144 (311)
T COG0679 78 FFLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------FGE------KGLAYAVIFLIIGLFLMFTLGV 144 (311)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------cCc------chHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655 5667777889999999999999999999999 996 7999999999999999999999
Q ss_pred HHHhcChhhhHhhhhcCCCCCCcccccccccchhhhhhccCCCCCcccchhhhccCCCCCCCccccccccccchhhhhhh
Q 018417 166 QLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKES 245 (356)
Q Consensus 166 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (356)
..+...+.+.+ .+
T Consensus 145 ~~l~~~~~~~~-------------------------------------------------------------------~~ 157 (311)
T COG0679 145 ILLARSGGGTN-------------------------------------------------------------------KS 157 (311)
T ss_pred HHHHHhcCCch-------------------------------------------------------------------hH
Confidence 99875532100 01
Q ss_pred hhHHHHHHHHHHHHhhhChHHHHHHHHHHHHhhhhHhHhhcCCCCcc-hhHHHHHHHhchhhhhhhhhhhcccccccccc
Q 018417 246 FWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPL-RVIQDSIEILGYVFVSAQFYCFVGWLATSSFS 324 (356)
Q Consensus 246 ~~~~~~~~~~~~~~~~~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl-~~i~~~~~~lG~~~~~~~~~~~~~~~~~~~~~ 324 (356)
.|+ ...+.+.||+++|.++|+++...+. ++ .++.++++++|
T Consensus 158 ~~~-------~~~~~~~nP~i~a~i~g~~~~~~~i----------~lP~~~~~~~~~l~--------------------- 199 (311)
T COG0679 158 LLS-------VLKKLLTNPLIIALILGLLLNLLGI----------SLPAPLDTAVDLLA--------------------- 199 (311)
T ss_pred HHH-------HHHHHHhCcHHHHHHHHHHHHHcCC----------CCcHHHHHHHHHHH---------------------
Confidence 121 2235788999999999999999874 34 59999999999
Q ss_pred cCCCcchhHHHHHHHhHcccC
Q 018417 325 YCRDGTIPCITLILGGNLIQG 345 (356)
Q Consensus 325 ~~~~~~vPl~llilG~~L~~~ 345 (356)
++++||+|+++|++|+..
T Consensus 200 ---~a~~pl~li~lG~~L~~~ 217 (311)
T COG0679 200 ---SAASPLALIALGLSLAFL 217 (311)
T ss_pred ---HhhhhHHHHHHhhhcchh
Confidence 999999999999999983
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.95 E-value=0.018 Score=55.52 Aligned_cols=105 Identities=14% Similarity=0.080 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhhhccCcCChhHHHH---HHHHHHHHHhhHHHHHHhcccCCHHHHH-HHHHHHHHHHHHHHHHHHH
Q 018417 14 IVQVLLISVLGALMATQYWNLLTADARRS---LNKMVFTVFTPSLMFASLAKTVTLEEII-SWWFMPVNVAMTFLIGGIL 89 (356)
Q Consensus 14 vl~vflli~vG~~l~~~r~gil~~~~~~~---LS~Lv~~v~lPaLIF~sl~~~~t~~~l~-~~~~~~~~~~l~~ll~~ll 89 (356)
...+++=+.+|..+| |.. + +..+. +.++.. +.+=++++..+... .+.+. +.+.+.+..++..++++++
T Consensus 140 ~~~v~vPl~lG~~~r--~~~--p-~~~~~~~~~~~~s~-~~l~liv~~~~~~~--~~~i~~~~~~~~~~~~ll~~~~~~~ 211 (286)
T TIGR00841 140 LVAVLIPVSIGMLVK--HKL--P-QIAKIILKVGLISV-FLLSVIIAVVGGIN--VENLATIGPLLLLVGILLPLAGFLL 211 (286)
T ss_pred HHHHHHHHHHHHHHH--HHh--H-HHHHHHHhCchHHH-HHHHHHHHHHHHhh--HHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 556666778888888 332 1 12222 222222 11112333333222 22232 2344455566778889999
Q ss_pred HHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhh
Q 018417 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (356)
Q Consensus 90 ~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL 127 (356)
||+++|.+|.+.++++.....+...|++ +++++....
T Consensus 212 g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~ 248 (286)
T TIGR00841 212 GYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS 248 (286)
T ss_pred HHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh
Confidence 9999999999988888999999999999 999998877
No 7
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.83 E-value=0.23 Score=48.78 Aligned_cols=148 Identities=20% Similarity=0.148 Sum_probs=83.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHH-HHHHHHHH
Q 018417 2 GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVA 80 (356)
Q Consensus 2 ~~~~~~~~~l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~-~~~~~~~~ 80 (356)
+.+++++..+. .+++=+.+|-++++.-.++. +..+..-..+-...+=+.++..++.. .+++... ..+.+..+
T Consensus 158 ~~~~m~~~i~~---~vllP~~LG~~~r~~~~~~~--~~~~~~l~~vs~~~illIv~~~~s~~--~~~~~~~~~~v~~~v~ 230 (319)
T COG0385 158 DVGGMFLSILL---QVLLPFVLGQLLRPLLPKWV--ERLKKALPPVSVLSILLIVYAAFSAA--VENGIWSGLLIFVAVI 230 (319)
T ss_pred chHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHhhhcchhhHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHH
Confidence 44565654433 33444566666662111111 11112222222333444455555443 2333222 23445567
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHH
Q 018417 81 MTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFI 160 (356)
Q Consensus 81 l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~ 160 (356)
+..+++++++|..+|.++.|++++.....+..-.|.+ +|.|+...- |+++ ....-..+|.+.+++.-
T Consensus 231 ~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~-lg~alA~~f-------~~~~-----~~alP~aif~~~q~~~~ 297 (319)
T COG0385 231 LHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG-LGAALAAAF-------FGNP-----LMALPLAIFSVWQNMSG 297 (319)
T ss_pred HHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH-HHHHHHHhc-------CCCc-----hhHhHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999998875 577777653 5522 34445566665555554
Q ss_pred HHHHHHHHh
Q 018417 161 WSYSYQLIK 169 (356)
Q Consensus 161 wT~G~~ll~ 169 (356)
=-++.+.-+
T Consensus 298 a~la~~~~~ 306 (319)
T COG0385 298 AVLAGLYAR 306 (319)
T ss_pred HHHHHHHHh
Confidence 444444433
No 8
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=94.96 E-value=0.43 Score=46.77 Aligned_cols=108 Identities=15% Similarity=0.212 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhhccCcCChh--HHHHHHHHHHHHHhhHHHHHHhcccCC---HHH--HHHHHHHHHHHHHHHHHHH
Q 018417 15 VQVLLISVLGALMATQYWNLLTAD--ARRSLNKMVFTVFTPSLMFASLAKTVT---LEE--IISWWFMPVNVAMTFLIGG 87 (356)
Q Consensus 15 l~vflli~vG~~l~~~r~gil~~~--~~~~LS~Lv~~v~lPaLIF~sl~~~~t---~~~--l~~~~~~~~~~~l~~ll~~ 87 (356)
..+++=..+|-.+| |. +.+. ..|..-+.+-...+-.+++.++...+. .++ ......+...++...++.+
T Consensus 165 ~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 240 (313)
T PF13593_consen 165 LTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVL 240 (313)
T ss_pred HHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 44555566777776 22 1111 123334444566667777777765421 111 1233334445566677778
Q ss_pred HHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhh
Q 018417 88 ILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (356)
Q Consensus 88 ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL 127 (356)
.++|..+|.++.+++++....+|++ ..+.-+|+|+...+
T Consensus 241 ~~~~~~~r~~~~~~~d~iA~~F~gs-~Ksl~~gvpl~~~l 279 (313)
T PF13593_consen 241 VLGWLAARLLGFSRPDRIAVLFCGS-QKSLALGVPLASIL 279 (313)
T ss_pred HHHHHHHhhcCCChhhEEEEEEEcC-cCcchhHHHHHHHH
Confidence 8899999999999999988888766 68888999999999
No 9
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=94.65 E-value=0.5 Score=46.64 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhh
Q 018417 77 VNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (356)
Q Consensus 77 ~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL 127 (356)
+..++..++++.++|+++|.+|.++++++...+++...|+ .+++++..+.
T Consensus 250 ~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~-~lai~lA~~~ 299 (328)
T TIGR00832 250 IPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNF-ELAIAVAISL 299 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhH-HHHHHHHHHh
Confidence 3445778889999999999999999999999999888776 4788888777
No 10
>COG3329 Predicted permease [General function prediction only]
Probab=92.29 E-value=9.9 Score=37.35 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.1
Q ss_pred HhhhChHHHHHHHHHHHHhhh
Q 018417 259 EELLAPPTLAAIVGFIFGAVV 279 (356)
Q Consensus 259 ~~~~nPp~~a~i~g~ii~~~~ 279 (356)
+.++||.+...+.|++++++.
T Consensus 213 Esflnpal~lllggl~iGlit 233 (372)
T COG3329 213 ESFLNPALVLLLGGLAIGLIT 233 (372)
T ss_pred HHHcCchHHHHHHHHHHhhee
Confidence 578999999999999999986
No 11
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=89.50 E-value=9.6 Score=38.44 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHH----HHHHHHHHHHHHH
Q 018417 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW----FMPVNVAMTFLIG 86 (356)
Q Consensus 11 l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~----~~~~~~~l~~ll~ 86 (356)
+..+-++.+++++|.++. ..|++|.+..+.+-..+....+|..++--+.+. +..++.... ...+.+.+++.++
T Consensus 22 f~~l~~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~-Dlr~i~~~g~~~l~~F~~~~~g~viG 98 (378)
T PF05684_consen 22 FKYLPGAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSA-DLRRILRLGGRLLLAFLIGAVGTVIG 98 (378)
T ss_pred HhhcCHHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456677888999999999 999995555667778888888888877766664 455554442 2333344555566
Q ss_pred HHHHHHHHHH
Q 018417 87 GILGWIVVKL 96 (356)
Q Consensus 87 ~ll~~lv~rl 96 (356)
..+++.+.+.
T Consensus 99 ~~va~~l~~~ 108 (378)
T PF05684_consen 99 AVVAFLLFGG 108 (378)
T ss_pred HHHHHHHHhh
Confidence 6666655543
No 12
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=81.25 E-value=14 Score=36.99 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhhccCcCChhHH---HHHHHHHHHHHhhHHHH-HHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 018417 17 VLLISVLGALMATQYWNLLTADAR---RSLNKMVFTVFTPSLMF-ASLAKTVTLEEIISWW--FMPVNVAMTFLIGGILG 90 (356)
Q Consensus 17 vflli~vG~~l~~~r~gil~~~~~---~~LS~Lv~~v~lPaLIF-~sl~~~~t~~~l~~~~--~~~~~~~l~~ll~~ll~ 90 (356)
...++.+|.+++ ..|+++++-. +.+.|++.+.+++.+++ -.+... +++++.+.. ...+..+...+...+.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t-~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYI-DLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-CHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 456777888899 9999997654 45667777777877776 355543 788887754 33444455556667778
Q ss_pred HHHHHHhCCCCCccchh
Q 018417 91 WIVVKLLRPKPHLEGLV 107 (356)
Q Consensus 91 ~lv~rl~~~~~~~~~~~ 107 (356)
++++|+++.-+-+..+.
T Consensus 284 ~lvGKllG~YPiE~aIt 300 (347)
T TIGR00783 284 AFLGKLMGMYPVESAIT 300 (347)
T ss_pred HHHHHHhCCChHHHHHH
Confidence 89999998755444433
No 13
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=80.25 E-value=17 Score=30.70 Aligned_cols=80 Identities=9% Similarity=0.124 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018417 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVV 94 (356)
Q Consensus 15 l~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~~ll~~lv~ 94 (356)
+.+++++.+.-+++ |+|++++++.+.+.--. ....|..+--+-.+++ ...+..-+...+.++.+..+++++--++.
T Consensus 38 iAMlLLi~~~~~l~--k~G~l~~~te~Gi~FW~-aMYIPIVVAMAA~QNV-v~Al~gG~~Allagi~av~~~~~~i~~l~ 113 (125)
T TIGR00807 38 IAMILLIISKELLA--KRGHLPQVTQFGVGFWS-AMYIPIVVAMAAGQNV-VAALSGGMLALLASVAALIVTVLVIRWIS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChhHHhHHHHHH-ccHhHHHHHHhhhchh-HHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999 99999999888775332 3446766554444442 33444555556667777777777777777
Q ss_pred HHhC
Q 018417 95 KLLR 98 (356)
Q Consensus 95 rl~~ 98 (356)
|+-|
T Consensus 114 r~g~ 117 (125)
T TIGR00807 114 KSSY 117 (125)
T ss_pred HhCC
Confidence 6643
No 14
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=71.99 E-value=32 Score=29.16 Aligned_cols=79 Identities=9% Similarity=0.075 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018417 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVV 94 (356)
Q Consensus 15 l~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~~ll~~lv~ 94 (356)
+.+++++.+..++. |+|++++++++.+.--. ....|..+--+-.+++ ...+..-+...+.++...++++++--++.
T Consensus 38 iAMlLLI~~~~~l~--k~g~l~~~te~Gi~FW~-amYIPIVVAMAA~QNV-v~Al~gG~~Allagi~av~~~~~~ip~ls 113 (125)
T PF03817_consen 38 IAMLLLIFARLWLQ--KKGLLSKPTEQGIEFWS-AMYIPIVVAMAAQQNV-VAALSGGPVALLAGIGAVAVCFLLIPLLS 113 (125)
T ss_pred HHHHHHHHHHHHHH--HcCCCChHHHhHHHHHH-ccHHHHHHHHhhhhhh-HHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999 99999999888775332 3446766654444442 23333334445556666666666666666
Q ss_pred HHh
Q 018417 95 KLL 97 (356)
Q Consensus 95 rl~ 97 (356)
|+-
T Consensus 114 r~g 116 (125)
T PF03817_consen 114 RIG 116 (125)
T ss_pred hcC
Confidence 653
No 15
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=64.80 E-value=70 Score=30.29 Aligned_cols=89 Identities=15% Similarity=0.116 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHhhhcc----CcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018417 14 IVQVLLISVLGALMATQYW----NLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGIL 89 (356)
Q Consensus 14 vl~vflli~vG~~l~~~r~----gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~~ll 89 (356)
++|++--+.+|.++.-++. ++++++..+.-++++.-..+|...=......-+.+++.+..+.++..=+..+...++
T Consensus 21 llPmlyA~iig~~~~~~~~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGpALilQE~GnlGTill 100 (241)
T PF11299_consen 21 LLPMLYALIIGMALGPQKLKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGPALILQEFGNLGTILL 100 (241)
T ss_pred hHHHHHHHHHHHHhcchhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHHhcchhhHHH
Confidence 4677766677766642244 779999999999999888888766544444347888888888887777777788888
Q ss_pred HHHHHHHhCCCCC
Q 018417 90 GWIVVKLLRPKPH 102 (356)
Q Consensus 90 ~~lv~rl~~~~~~ 102 (356)
+.-++-+++.+|+
T Consensus 101 aLPiAllLGlkRE 113 (241)
T PF11299_consen 101 ALPIALLLGLKRE 113 (241)
T ss_pred HhHHHHHhcccHH
Confidence 8888877877654
No 16
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=64.14 E-value=60 Score=32.13 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=52.9
Q ss_pred ccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccch
Q 018417 31 YWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW----WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGL 106 (356)
Q Consensus 31 r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~----~~~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~ 106 (356)
..|+++ .......-+-+-.+|++|+--+.+- +..++... ..+.+.+....++++.+++.+.+-+..+--+.+.
T Consensus 47 t~Glfs--~~S~~y~~v~n~llpamI~lmLlqc-d~Rki~Klg~rll~ifli~sv~~vlGfIl~yp~~ksf~gd~Wka~g 123 (384)
T COG5505 47 TVGLFS--VESPVYDTVWNYLLPAMIPLMLLQC-DVRKIFKLGRRLLFIFLISSVGTVLGFILAYPLLKSFIGDLWKAGG 123 (384)
T ss_pred hccccc--ccCcHHHHHHHHHHHHHHHHHHHHc-cHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhcchHHhhhh
Confidence 588884 5566677777888999999888775 56665544 3444455566677777777776654332222233
Q ss_pred hhhhhccCCcchh
Q 018417 107 VIATCASGNLGNL 119 (356)
Q Consensus 107 ~~~~~~f~Nsg~l 119 (356)
.+.++--+-+.||
T Consensus 124 mi~gSytGGSaNm 136 (384)
T COG5505 124 MISGSYTGGSANM 136 (384)
T ss_pred heeeeeeCCcchH
Confidence 3444445555555
No 17
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=61.37 E-value=62 Score=33.54 Aligned_cols=59 Identities=20% Similarity=0.304 Sum_probs=34.1
Q ss_pred CCCccchhhhhhccCC-cc-hhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 018417 100 KPHLEGLVIATCASGN-LG-NLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQS 171 (356)
Q Consensus 100 ~~~~~~~~~~~~~f~N-sg-~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~wT~G~~ll~~~ 171 (356)
|+.+|+.+.....-++ .| .+.+|+...||+. .+|= +++.|+. +..-+.|.+--..+-.|
T Consensus 158 P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s---~~GW------~sifY~~----g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 158 PPNERSTFIAILTAGSQLGTIITMPVSGLLCES---SLGW------PSIFYVF----GIVGLIWFILWFLFYSD 218 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc---CCCC------chHHHHH----HHHHHHHHHHHHHHhcC
Confidence 6667766654333333 33 3488888888865 3563 3555543 34466777666665444
No 18
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=60.69 E-value=1.5e+02 Score=29.72 Aligned_cols=83 Identities=24% Similarity=0.367 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCccchhh----hhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHH
Q 018417 80 AMTFLIGGILGWIVVKLLRPKPHLEGLVI----ATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMAL 155 (356)
Q Consensus 80 ~l~~ll~~ll~~lv~rl~~~~~~~~~~~~----~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv 155 (356)
.+...+-.++|..+.+++..++. .+... +....+..+.+| |..+.. +|- +++.+.|+.++.+=++.
T Consensus 101 ~~~~~~Q~~vG~~la~l~gl~p~-~Gll~Gsi~f~GGhGTAaa~g-~~fe~~-------~G~-~~a~~vg~a~AT~Glv~ 170 (368)
T PF03616_consen 101 IILAFLQNIVGLGLAKLLGLDPL-FGLLAGSIGFTGGHGTAAAFG-PTFEEL-------YGW-EGATSVGMAAATFGLVV 170 (368)
T ss_pred HHHHHHHHHHHHHHHHHhCCCch-HHHHhccccccCCccHHHHHH-HHHHHh-------cCh-hhhHHHHHHHHHHHHHH
Confidence 34455667777777777766542 23211 111223333333 333333 453 33455666666666554
Q ss_pred hHHHHHHHHHHHHhcCh
Q 018417 156 GGFFIWSYSYQLIKQSS 172 (356)
Q Consensus 156 ~~il~wT~G~~ll~~~~ 172 (356)
..++==-++-+++++..
T Consensus 171 G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 171 GGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 44443334555565543
No 19
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=59.64 E-value=2e+02 Score=29.02 Aligned_cols=133 Identities=15% Similarity=0.172 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhhccCcCCh-hHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018417 15 VQVLLISVLGALMATQYWNLLTA-DARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIV 93 (356)
Q Consensus 15 l~vflli~vG~~l~~~r~gil~~-~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~~ll~~lv 93 (356)
..+..+..+|.... ..++... .+...+..+.+|++ |..+....+..++.+...+.+++++...+-.++-+.+
T Consensus 241 ~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~f-----fa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~ 313 (378)
T PF05684_consen 241 WLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYLF-----FAVIGASADISELLDAPSLFLFGFIILAIHLLLMLIL 313 (378)
T ss_pred HHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHHH-----HHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566666654 2333222 46677888777763 4556555677778775555666777777778888889
Q ss_pred HHHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 018417 94 VKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166 (356)
Q Consensus 94 ~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~wT~G~~ 166 (356)
+|++|.|.+ .... -+|.+--|-+-..+++.. +|+ + -..-|+....+=+...|.+=+.+|..
T Consensus 314 ~kl~k~~l~----~~~v--AS~AnIGGpaTA~a~A~a----~~~-~-Lv~pgvL~gvlGyaiGty~G~~va~~ 374 (378)
T PF05684_consen 314 GKLFKIDLF----ELLV--ASNANIGGPATAPAVAAA----KGP-S-LVPPGVLMGVLGYAIGTYLGLAVAQL 374 (378)
T ss_pred HHHHCCCHH----HHHH--HhhcccCCcchHHHHHHh----cCC-c-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998753 2222 234444444434334332 442 1 12235555555444455554544443
No 20
>PRK04972 putative transporter; Provisional
Probab=51.30 E-value=2.2e+02 Score=30.25 Aligned_cols=164 Identities=10% Similarity=-0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcCChhHHHH----------------HHHHHHHHHhhHHHHH---HhcccCCHHHHHH-
Q 018417 12 MPIVQVLLISVLGALMATQYWNLLTADARRS----------------LNKMVFTVFTPSLMFA---SLAKTVTLEEIIS- 71 (356)
Q Consensus 12 ~~vl~vflli~vG~~l~~~r~gil~~~~~~~----------------LS~Lv~~v~lPaLIF~---sl~~~~t~~~l~~- 71 (356)
+.++.+|+.+++||++. |.++-+-+--.. +...+-++.+=..++. +....+ .+.+.+
T Consensus 12 ~~~~~lf~~i~lG~~lG--~i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~vG~~~Gp~F-~~~l~~~ 88 (558)
T PRK04972 12 NYILLLFVVLALGLCLG--KLRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNF-FSIFFRD 88 (558)
T ss_pred CChHHHHHHHHHHHhhh--ceEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhhhhHHH-HHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHH
Q 018417 72 WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASF 151 (356)
Q Consensus 72 ~~~~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~i 151 (356)
-+...+.+++..+++.++++.+.|+++.+ .-...-.++-+..|+--++-. .+++.+..-.+=.......+.++.|+..
T Consensus 89 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~aGa~T~tp~l~~a-~~~~~~~~~~~~~~~~~~~~~~vgYa~~ 166 (558)
T PRK04972 89 GKNYLMLALVMVGSALVIALGLGKLFGWD-IGLTAGMLAGSMTSTPVLVGA-GDTLRHSGAESRQLSLALDNLSLGYALT 166 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHhhccccCcHHHHHH-HHHHhccCccccchhcccCccchhHHhH
Q ss_pred HHHHhHHHHHHHH--HHHHhcChhhhHhhhh
Q 018417 152 SMALGGFFIWSYS--YQLIKQSSVRYKALAQ 180 (356)
Q Consensus 152 y~iv~~il~wT~G--~~ll~~~~~~~~~~~~ 180 (356)
|.++.-...+..- ..+++.+..+.++..+
T Consensus 167 y~~g~i~~i~~~~~~p~l~ridl~~e~~~~e 197 (558)
T PRK04972 167 YLIGLVSLIVGARYLPKLQHQDLQTSAQQIA 197 (558)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
No 21
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=48.06 E-value=1.3e+02 Score=32.03 Aligned_cols=153 Identities=15% Similarity=0.053 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcCChhHH----H------------HHHHHHHHHHhhHHHHHHhcccCCH---HHHHH
Q 018417 11 SMPIVQVLLISVLGALMATQYWNLLTADAR----R------------SLNKMVFTVFTPSLMFASLAKTVTL---EEIIS 71 (356)
Q Consensus 11 l~~vl~vflli~vG~~l~~~r~gil~~~~~----~------------~LS~Lv~~v~lPaLIF~sl~~~~t~---~~l~~ 71 (356)
-++++-+|+++++||++. |.++=+=.-- - .+...+-++.+=..+| ++.-...+ ..+..
T Consensus 9 ~~p~l~lfl~i~lG~~lG--~iki~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy-~vG~~~Gp~Ff~~l~~ 85 (562)
T TIGR03802 9 SNPEIALFLSLALGYLIG--KIKFGSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIF-AIGYEVGPQFFASLKK 85 (562)
T ss_pred HCHHHHHHHHHHHhHhhc--ceEEeeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHH-HhhhccCHHHHHHHHh
Confidence 467899999999999998 5554211100 0 1233333444433333 33222122 23333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCc---hhhhhhhHH
Q 018417 72 -WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNR---DVCSSVGLS 147 (356)
Q Consensus 72 -~~~~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~---~~~~~~g~~ 147 (356)
-+...+.+++..+++.++.+.+.++++.+.... .-+++-+..|+--|+-. .+++.+. + ..++ ....+.++.
T Consensus 86 ~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~-~Gl~aGalT~tp~l~aA-~~a~~~~-~--~~~~~~~~~~~~~avg 160 (562)
T TIGR03802 86 DGLREIILALVFAVSGLITVYALAKIFGLDKGTA-AGLAAGGLTQSAVIGTA-GDAIEKL-G--LSPEQKTAYQGNVAVA 160 (562)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHHhchhhccHHHHHH-HHHHHhc-C--CCcchhhcccccccee
Confidence 355566778888888999999999999875433 44556678888888776 3444211 1 1100 000124678
Q ss_pred HHHHHHHHhHHHHH---HHHHHHHhcC
Q 018417 148 YASFSMALGGFFIW---SYSYQLIKQS 171 (356)
Q Consensus 148 Y~~iy~iv~~il~w---T~G~~ll~~~ 171 (356)
|.+.|-+..--..+ -+...+++.+
T Consensus 161 Yav~YpfGvig~i~~~~~~~p~l~~~~ 187 (562)
T TIGR03802 161 YAVTYIFGTIGVIIVLVNILPWLMGID 187 (562)
T ss_pred eehhhhhHHHHHHHHHHHHHHHHhCCC
Confidence 88887765443342 2334455554
No 22
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=47.01 E-value=49 Score=35.22 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCcCChhHHHH----------------HHH-----------HHHHHHhhHHHHHHhccc
Q 018417 11 SMPIVQVLLISVLGALMATQYWNLLTADARRS----------------LNK-----------MVFTVFTPSLMFASLAKT 63 (356)
Q Consensus 11 l~~vl~vflli~vG~~l~~~r~gil~~~~~~~----------------LS~-----------Lv~~v~lPaLIF~sl~~~ 63 (356)
+-.++-+.+.+..||+++++|..++++..... .++ +-+.+++|..||.+-.+-
T Consensus 38 ~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~l 117 (575)
T KOG1965|consen 38 LFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYSL 117 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhccccee
Confidence 33455667778889999855555887665443 233 778899999999887764
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 018417 64 VTLEEIISWWFMPVNVAMTFLIG 86 (356)
Q Consensus 64 ~t~~~l~~~~~~~~~~~l~~ll~ 86 (356)
-...-..+...+..+++..+.++
T Consensus 118 ~k~~fF~n~~si~~fa~~Gt~IS 140 (575)
T KOG1965|consen 118 KKKQFFRNIGSILLFAIFGTFIS 140 (575)
T ss_pred chhhhhhhhHHHHHhhhcceeee
Confidence 22233344455555555444433
No 23
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=44.58 E-value=1.8e+02 Score=32.21 Aligned_cols=94 Identities=13% Similarity=0.010 Sum_probs=61.5
Q ss_pred ccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhh
Q 018417 31 YWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIAT 110 (356)
Q Consensus 31 r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~ 110 (356)
|.+-+...-...+..++..+++|+.+..+-.+. +...+..+...........+.-++.....+.++|.|. |.....+
T Consensus 295 ~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~-di~~i~~~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~--~~~l~l~ 371 (769)
T KOG1650|consen 295 HGPPLGSALIEKLEDLVSGLLLPLYFAISGLKT-DISRINKWGALIRTILIFGAVKLLSTLGTSLYCKLPL--RDSLALG 371 (769)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHhhccce-eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hHHHHHH
Confidence 445455566778999999999999998877665 4555555433333344455555555566666677765 4556667
Q ss_pred hccCCcchhHHHHHHhh
Q 018417 111 CASGNLGNLLLIIVPAI 127 (356)
Q Consensus 111 ~~f~Nsg~lglpli~aL 127 (356)
..+++=|.+-+-+...-
T Consensus 372 ~lm~~kgl~el~~~~~~ 388 (769)
T KOG1650|consen 372 LLMSTKGLVELIVLNTG 388 (769)
T ss_pred HHHHhhhHHHHHHHHHH
Confidence 67777777777666443
No 24
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=43.00 E-value=88 Score=28.52 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=29.8
Q ss_pred CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccC
Q 018417 65 TLEEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASG 114 (356)
Q Consensus 65 t~~~l~~~-~~~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~ 114 (356)
..+++.+. +...+.++...+.+.+.+++..++++.+. +.....++.|+
T Consensus 47 ~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~~--~~~lav~sG~G 95 (191)
T PF03956_consen 47 ILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLSL--KESLAVASGFG 95 (191)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHccCc
Confidence 34455522 45566677777788888888888885543 34445555553
No 25
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=42.67 E-value=3.2e+02 Score=28.09 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=54.1
Q ss_pred HHhhhccCcCCh---hHHHHHHHHHHHHHhhHHHHH-HhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018417 26 LMATQYWNLLTA---DARRSLNKMVFTVFTPSLMFA-SLAKTVTLEEIISWW--FMPVNVAMTFLIGGILGWIVVKLLRP 99 (356)
Q Consensus 26 ~l~~~r~gil~~---~~~~~LS~Lv~~v~lPaLIF~-sl~~~~t~~~l~~~~--~~~~~~~l~~ll~~ll~~lv~rl~~~ 99 (356)
+++ -.|++++ ++.+++.+++.+-++|++++- .+.- .+++++.+.. ...+.++...+...+.++++.|+++.
T Consensus 283 i~K--~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~-~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~ 359 (414)
T PF03390_consen 283 IVK--AFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAY-TDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGF 359 (414)
T ss_pred HHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455 6888885 456789999999999999885 4442 3677776653 22344556666677778889999887
Q ss_pred CCCccchh
Q 018417 100 KPHLEGLV 107 (356)
Q Consensus 100 ~~~~~~~~ 107 (356)
-+-+..+.
T Consensus 360 YPvEsAIt 367 (414)
T PF03390_consen 360 YPVESAIT 367 (414)
T ss_pred ChHHHHHH
Confidence 55444433
No 26
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=39.69 E-value=3.8e+02 Score=27.47 Aligned_cols=90 Identities=21% Similarity=0.222 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhhccCcCChh---HHHHHHHHHHHHHhhHHHHH-HhcccCCHHHHHHH--HHHHHHHHHHHHHHHHH
Q 018417 16 QVLLISVLGALMATQYWNLLTAD---ARRSLNKMVFTVFTPSLMFA-SLAKTVTLEEIISW--WFMPVNVAMTFLIGGIL 89 (356)
Q Consensus 16 ~vflli~vG~~l~~~r~gil~~~---~~~~LS~Lv~~v~lPaLIF~-sl~~~~t~~~l~~~--~~~~~~~~l~~ll~~ll 89 (356)
++..++.+=.+++ -.++++++ +.+.++++..+=++=.|++. .++-+ +++++.+. |.-.+.++...+.....
T Consensus 292 ~va~MIil~a~lk--~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~yt-dl~ev~~alt~~~vii~~~vVl~~i~~ 368 (438)
T COG3493 292 PVAFMIILVAILK--AANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYT-DLNEVAAALTWQNVIIALSVVLGAILG 368 (438)
T ss_pred hHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccc-cHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 3435555556777 78888854 56678887776666666654 34322 56776655 44455566666777788
Q ss_pred HHHHHHHhCCCCCccchhh
Q 018417 90 GWIVVKLLRPKPHLEGLVI 108 (356)
Q Consensus 90 ~~lv~rl~~~~~~~~~~~~ 108 (356)
+++++|+++.-+-+..+..
T Consensus 369 ~~f~grl~~~YPVEaAI~a 387 (438)
T COG3493 369 GAFVGRLMGFYPVEAAITA 387 (438)
T ss_pred HHHHHHHhcCCchHHHHHH
Confidence 9999999887555544443
No 27
>PF09971 DUF2206: Predicted membrane protein (DUF2206); InterPro: IPR018701 This family of predicted membrane proteins from archaea has no known function.
Probab=37.92 E-value=2.6e+02 Score=28.14 Aligned_cols=115 Identities=12% Similarity=0.023 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHH-----HhcccCCHHHHHHHHHHH
Q 018417 2 GFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFA-----SLAKTVTLEEIISWWFMP 76 (356)
Q Consensus 2 ~~~~~~~~~l~~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~-----sl~~~~t~~~l~~~~~~~ 76 (356)
+++..+...+.-....++++++.+.+- |+..-..+.. ..-+.+-+..=.++.. .++.....+++.+...+.
T Consensus 111 s~l~~i~k~i~l~~~~~i~IG~l~~~~--~~~~~k~~~~--~~Yl~fs~~~~iiLia~i~lP~fa~~mn~~RLy~itli~ 186 (367)
T PF09971_consen 111 SLLHSISKYIHLFIQFFIIIGFLALIL--KRIYKKIKFN--IEYLAFSLVSLIILIASIVLPFFASVMNPTRLYQITLIF 186 (367)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhh--HHHHHHHHHHHHHHHHHHhccchhhhcCHHHHHHHHHHH
Confidence 344455555555555666666666654 2222221111 2122221111122222 223345778888877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC--Ccc------chhhhhhccCCcchhHH
Q 018417 77 VNVAMTFLIGGILGWIVVKLLRPKP--HLE------GLVIATCASGNLGNLLL 121 (356)
Q Consensus 77 ~~~~l~~ll~~ll~~lv~rl~~~~~--~~~------~~~~~~~~f~Nsg~lgl 121 (356)
++.+..+... .+...+.|.++.+. ..+ .++......-|+|++.-
T Consensus 187 LAPf~iiG~~-~~~~~i~k~~~~~~~~~~~~~~ki~~ifl~v~lLfnsG~i~~ 238 (367)
T PF09971_consen 187 LAPFFIIGGI-TLFKLINKLFRRIWKPINKNSFKILSIFLAVFLLFNSGFIYE 238 (367)
T ss_pred HHHHHHHHHH-HHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 6655544433 33444466554322 122 23333334446776655
No 28
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=36.30 E-value=4.9e+02 Score=26.67 Aligned_cols=93 Identities=13% Similarity=0.200 Sum_probs=56.4
Q ss_pred ccCcCChhHHHHHHHHH-----HHHHhhHHHHHHhcccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Q 018417 31 YWNLLTADARRSLNKMV-----FTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHLE 104 (356)
Q Consensus 31 r~gil~~~~~~~LS~Lv-----~~v~lPaLIF~sl~~~~t~~~l~~~~-~~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~ 104 (356)
..++++++..+..+++- .+++.+||+.-|+... +.+.+.+.. -...-.++.++.+.+.+.++..++..+..+.
T Consensus 91 ~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgm-nRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d~ 169 (438)
T COG3493 91 FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGM-NRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQDT 169 (438)
T ss_pred HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChHHe
Confidence 48999999999988874 6899999999998764 344433321 1111224455556667777777777655443
Q ss_pred chh--hhhhccCC-cchhHHHHH
Q 018417 105 GLV--IATCASGN-LGNLLLIIV 124 (356)
Q Consensus 105 ~~~--~~~~~f~N-sg~lglpli 124 (356)
-.+ ...+.-+| .|-+|+..+
T Consensus 170 ~m~~vlPIM~GG~GaGavPLS~i 192 (438)
T COG3493 170 MMYVVLPIMGGGMGAGAVPLSEI 192 (438)
T ss_pred eeeEEeeeccCCCCCCcccHHHH
Confidence 222 22222222 356677766
No 29
>PRK03818 putative transporter; Validated
Probab=35.48 E-value=5.7e+02 Score=27.16 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCch-hhhhhhHHHHHH
Q 018417 73 WFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRD-VCSSVGLSYASF 151 (356)
Q Consensus 73 ~~~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~-~~~~~g~~Y~~i 151 (356)
+...+.+++..+++.++++++.++++.+.. ...-.++-+..|+--|+-.. +++ ++ .+.++ ...+-++.|...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~aGa~T~tp~l~aa~-~~~-~~----~~~~~~~~~~~a~gYa~~ 163 (552)
T PRK03818 91 LRLNLFAVLIVILGGLVTAILHKLFGIPLP-VMLGIFSGAVTNTPALGAGQ-QIL-RD----LGTPGDLVDQMGMGYAMA 163 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHhhccccccHHHHHHH-HHH-hc----cCCCccccCCcchhhHhH
Confidence 445566777778888889999888988754 22334555666766665542 222 11 11000 001246778877
Q ss_pred HHHHhHHHHHH--HHHHHHhcCh
Q 018417 152 SMALGGFFIWS--YSYQLIKQSS 172 (356)
Q Consensus 152 y~iv~~il~wT--~G~~ll~~~~ 172 (356)
|-+..-..... +...+++.+.
T Consensus 164 Yp~g~i~~il~~~~~~~~~~~~~ 186 (552)
T PRK03818 164 YPFGICGILLSMWLIRLIFRINV 186 (552)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCh
Confidence 76654433333 4566666553
No 30
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=34.97 E-value=4.4e+02 Score=26.47 Aligned_cols=95 Identities=14% Similarity=0.213 Sum_probs=60.0
Q ss_pred ccCcCChhHHHHHHHHH-----HHHHhhHHHHHHhcccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcc
Q 018417 31 YWNLLTADARRSLNKMV-----FTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIVVKLLRPKPHLE 104 (356)
Q Consensus 31 r~gil~~~~~~~LS~Lv-----~~v~lPaLIF~sl~~~~t~~~l~~~~-~~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~ 104 (356)
..|+++++..+..+++. .+++.-||+-.|+..- +.+-+.+.. ......++..+.+.+++.++..++..+..+.
T Consensus 5 ~~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m-~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~ 83 (347)
T TIGR00783 5 FYNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGM-NRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDHS 83 (347)
T ss_pred EeCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHh
Confidence 57899999988888854 4788899999998774 444443331 1112224556666777777777777654433
Q ss_pred chh--hhhhccCC-cchhHHHHHHh
Q 018417 105 GLV--IATCASGN-LGNLLLIIVPA 126 (356)
Q Consensus 105 ~~~--~~~~~f~N-sg~lglpli~a 126 (356)
-.+ ...+.=+| .|-+|+..+.+
T Consensus 84 ~~~i~lPIm~GG~GaGavPLS~~Y~ 108 (347)
T TIGR00783 84 LMYIVMPIMAGGVGAGIVPLSIIYS 108 (347)
T ss_pred hheeeehhcCCCcccchhhHHHHHH
Confidence 222 33333444 67788888755
No 31
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.39 E-value=32 Score=26.53 Aligned_cols=28 Identities=14% Similarity=0.084 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Q 018417 5 TFFEVASMPIVQVLLISVLGALMATQYWNL 34 (356)
Q Consensus 5 ~~~~~~l~~vl~vflli~vG~~l~~~r~gi 34 (356)
+.++.++...+-+.+.|.+||+.. |+-+
T Consensus 2 ~t~lltFg~Fllvi~gMsiG~I~k--rk~I 29 (77)
T COG2991 2 TTFLLTFGIFLLVIAGMSIGYIFK--RKSI 29 (77)
T ss_pred ccHHHHHHHHHHHHHHHhHhhhee--cccc
Confidence 356667777788889999999988 6654
No 32
>PRK05326 potassium/proton antiporter; Reviewed
Probab=32.53 E-value=2.4e+02 Score=29.77 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHH
Q 018417 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW 72 (356)
Q Consensus 17 vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~ 72 (356)
++....+|..+. +.....++..+...+.+.+++.|. +|..+.-..++.++.+.
T Consensus 247 ~la~~iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~ 299 (562)
T PRK05326 247 FLAVYLAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDI 299 (562)
T ss_pred HHHHHHHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHH
Confidence 445567787776 555444444555555556666765 56656555566666554
No 33
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=32.34 E-value=2.7e+02 Score=27.57 Aligned_cols=100 Identities=22% Similarity=0.254 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 018417 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW-WFMPVNVAMTFLIGGILGWIV 93 (356)
Q Consensus 15 l~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~-~~~~~~~~l~~ll~~ll~~lv 93 (356)
..+.+=+.+|.+++ . ++++.++.+.+= ..+.+|..+| .+....+.+++.+. +...+..++.+.+.+.+++++
T Consensus 167 v~lilpILiGmilG--N---ld~~~~~~l~~G-i~f~I~f~~f-~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i 239 (312)
T PRK12460 167 VAALLPLVLGMILG--N---LDPDMRKFLTKG-GPLLIPFFAF-ALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFA 239 (312)
T ss_pred HHHHHHHHHHHHHh--c---cchhhHHHHhcc-ceEeHHHHHH-HhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 34556667888887 4 444334444333 2224444443 34445688888777 444566677888889999999
Q ss_pred HHHhCCCCCccchhhhhhccCCcchhHHHH
Q 018417 94 VKLLRPKPHLEGLVIATCASGNLGNLLLII 123 (356)
Q Consensus 94 ~rl~~~~~~~~~~~~~~~~f~Nsg~lglpl 123 (356)
.|++|.+++ -....++.-+|+.-=|-.+
T Consensus 240 ~rllg~~~~--~g~li~stAGnAIcgpAAV 267 (312)
T PRK12460 240 DRLVGGTGI--AGAAASSTAGNAVATPLAI 267 (312)
T ss_pred HHHhCCChh--HHHHHHHHhhHHHHHHHHH
Confidence 999865543 2233343456654434333
No 34
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=31.48 E-value=5.9e+02 Score=26.18 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=63.0
Q ss_pred HHHHHHhhhccCcCChhHHHHHHHHH-----HHHHhhHHHHHHhcccCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 018417 22 VLGALMATQYWNLLTADARRSLNKMV-----FTVFTPSLMFASLAKTVTLEEIISWW-FMPVNVAMTFLIGGILGWIVVK 95 (356)
Q Consensus 22 ~vG~~l~~~r~gil~~~~~~~LS~Lv-----~~v~lPaLIF~sl~~~~t~~~l~~~~-~~~~~~~l~~ll~~ll~~lv~r 95 (356)
...-++. ..|+++++..+..+++. .+++.-||+-.|+..- +.+-+.+.. ......+...+.+.+++.++..
T Consensus 67 f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm-~RklLika~~r~~p~il~g~~~a~~~g~lvG~ 143 (414)
T PF03390_consen 67 FVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGM-NRKLLIKAFARFIPPILGGVIGAFLLGGLVGM 143 (414)
T ss_pred HHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555 69999999999888876 5788899999988764 444443331 1122234556666777777777
Q ss_pred HhCCCCCccchh--hhhhccCC-cchhHHHHHHh
Q 018417 96 LLRPKPHLEGLV--IATCASGN-LGNLLLIIVPA 126 (356)
Q Consensus 96 l~~~~~~~~~~~--~~~~~f~N-sg~lglpli~a 126 (356)
++..+..+.-.+ ...+.=+| .|-+|+..+.+
T Consensus 144 l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya 177 (414)
T PF03390_consen 144 LFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYA 177 (414)
T ss_pred HhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHH
Confidence 777654333222 23333333 57778877743
No 35
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=31.22 E-value=6.7e+02 Score=26.68 Aligned_cols=125 Identities=13% Similarity=0.028 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhhhcc---CcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 018417 15 VQVLLISVLGALMATQYW---NLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIIS-WWFMPVNVAMTFLIGGILG 90 (356)
Q Consensus 15 l~vflli~vG~~l~~~r~---gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~-~~~~~~~~~l~~ll~~ll~ 90 (356)
.+++.=+.+|++-+ +. +-+++.+...+.++=+.+|+=|.=..+=.+- .+.+.+ .+...+.+++.+++..+++
T Consensus 420 g~l~~gl~~g~~~~--~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f--~~~l~~~G~~~~~~g~~~~~~~~~~~ 495 (562)
T TIGR03802 420 GALISGLVFGWLRS--KHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQA--VTAIKEMGLTLFLLGIVVTILPLIIT 495 (562)
T ss_pred HHHHHHHHHHHhcc--cCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHH--HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444455565543 32 2377777777888888777766644322221 122333 3455566677777787888
Q ss_pred HHHH-HHhCCCCCccchhhhhhccCCcchhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhH
Q 018417 91 WIVV-KLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGG 157 (356)
Q Consensus 91 ~lv~-rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~ 157 (356)
+++. +++|.+.. ...-..+-+..|+.-|+.. ... -+++ .-++.|...|-+.+.
T Consensus 496 ~~~~~~~~~~~~~-~~~G~~aG~~t~t~~l~~a--~~~-------~~~~----~~~~gYa~~Yp~~~i 549 (562)
T TIGR03802 496 MLIGKYVLKYDPA-LLLGALAGARTATPALGAV--LER-------AGSS----VPALGYTITYALGNV 549 (562)
T ss_pred HHHHHHHhCCCHH-HHHHHhhccCCCcHHHHHH--HHh-------cCCC----CcccchHhHHHHHHH
Confidence 8888 57887753 2222344455555554443 222 1221 135778888876433
No 36
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=30.48 E-value=4.1e+02 Score=26.70 Aligned_cols=82 Identities=9% Similarity=0.081 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHH--HHHhccc---CCHHHHHHHHHHHHHHHHHHHHHH
Q 018417 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLM--FASLAKT---VTLEEIISWWFMPVNVAMTFLIGG 87 (356)
Q Consensus 13 ~vl~vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLI--F~sl~~~---~t~~~l~~~~~~~~~~~l~~ll~~ 87 (356)
...|++.+...|-++| ..|+.+ .-.+...+-..|+.+=.|= ..+..+. ++++.+.-+..-.+.-.+.++.+.
T Consensus 211 ~a~pLig~Lm~Gnl~r--Esgv~~-rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~tl~I~~LGl~Af~~~tagGv 287 (360)
T PF03977_consen 211 SAAPLIGMLMFGNLLR--ESGVVE-RLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQTLKILVLGLVAFAFSTAGGV 287 (360)
T ss_pred chHHHHHHHHHHHHHH--HhccHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHHHHHHHHHHHHHHHHHhHHH
Confidence 3467778888899999 888744 3333333333333322221 1122221 244444433332333334455555
Q ss_pred HHHHHHHHHh
Q 018417 88 ILGWIVVKLL 97 (356)
Q Consensus 88 ll~~lv~rl~ 97 (356)
+.+++...+.
T Consensus 288 l~~k~mn~f~ 297 (360)
T PF03977_consen 288 LFAKLMNLFS 297 (360)
T ss_pred HHHHHHHHHh
Confidence 5555555544
No 37
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=28.99 E-value=90 Score=25.04 Aligned_cols=50 Identities=32% Similarity=0.608 Sum_probs=33.5
Q ss_pred hChHHHHHHHHHHHHhhhhHhHhhcCCCCcchhHHHHHHHhchhhhhhhhhhhcccccc
Q 018417 262 LAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLAT 320 (356)
Q Consensus 262 ~nPp~~a~i~g~ii~~~~~l~~~~~~~~~pl~~i~~~~~~lG~~~~~~~~~~~~~~~~~ 320 (356)
+-|.+.|+++|++++++.-+..+ .| ..+.-.++.++ |++-+...-||+..
T Consensus 22 lPpvivAsvvGllVslvQA~TQi--Qd----QTl~f~iKLl~---V~~tl~lt~~Wlg~ 71 (89)
T COG4794 22 LPPVIVASVVGLLVSLVQALTQI--QD----QTLPFGIKLLA---VSATLFLTAGWLGA 71 (89)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH--HH----hHHHHHHHHHH---HHHHHHHHhHHhHH
Confidence 45677899999999998743221 00 24555677776 77777777788764
No 38
>COG2855 Predicted membrane protein [Function unknown]
Probab=28.69 E-value=6e+02 Score=25.37 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCc
Q 018417 38 DARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFM-PVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNL 116 (356)
Q Consensus 38 ~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~-~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Ns 116 (356)
.+...-+|...++.. ++..+ +++.+++.+...- .....+.....+++++.+.|+++.|++. ....++..+=+
T Consensus 62 ~GI~fs~k~LLr~gI---vLlG~--~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld~~~--a~Lia~GssIC 134 (334)
T COG2855 62 AGITFSSKKLLRLGI---VLLGF--RLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLDKKL--ALLIAAGSSIC 134 (334)
T ss_pred cchhhhHHHHHHHHH---HHHcc--eeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHccchhh
Confidence 334445555555432 22222 3577888877433 3344566677888999999999888643 34444444444
Q ss_pred chhHHHHHHhhhhccCCCCCCchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHhcC
Q 018417 117 GNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQS 171 (356)
Q Consensus 117 g~lglpli~aL~~~~~~~fG~~~~~~~~g~~Y~~iy~iv~~il~wT~G~~ll~~~ 171 (356)
|.=.+.-++.+ .+.+++-...++..+.++.... .+.+..=+.++.-+
T Consensus 135 GasAiaA~~pv-------ika~~~eva~aIa~V~lfgtia-~llyP~l~~~l~l~ 181 (334)
T COG2855 135 GASAIAATAPV-------IKAEEEEVAVAIAVVVLFGTLA-MLLYPLLYPLLGLS 181 (334)
T ss_pred HHHHHHHhCCc-------CCCCccccceehhhHHHHHHHH-HHHHHHHHHHhCCC
Confidence 44333333333 3333333344555555555432 23444444444433
No 39
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=27.16 E-value=7.4e+02 Score=25.91 Aligned_cols=20 Identities=10% Similarity=0.086 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccC
Q 018417 12 MPIVQVLLISVLGALMATQYWN 33 (356)
Q Consensus 12 ~~vl~vflli~vG~~l~~~r~g 33 (356)
..+.-+...++.|++.- |.+
T Consensus 318 ~~~~g~v~~i~ag~lsd--r~~ 337 (495)
T KOG2533|consen 318 YDVGGIVGLILAGYLSD--RLK 337 (495)
T ss_pred HHhhhHHHHHHHHHHHH--HHh
Confidence 34556667778888777 655
No 40
>PF11045 YbjM: Putative inner membrane protein of Enterobacteriaceae; InterPro: IPR020368 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=24.96 E-value=1.1e+02 Score=26.20 Aligned_cols=44 Identities=32% Similarity=0.501 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhHhHhhcCCCCcchhHHHHHHHhchhhhhhhhhhhccc
Q 018417 265 PTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGW 317 (356)
Q Consensus 265 p~~a~i~g~ii~~~~~l~~~~~~~~~pl~~i~~~~~~lG~~~~~~~~~~~~~~ 317 (356)
|++++++|..+.++ ++.+++.+. + +..+-++|.+ ||-|.|-.|=
T Consensus 64 pL~GAllAap~clL--l~~~~~~~~---r---s~wQelAw~~-SAvFWc~lGA 107 (125)
T PF11045_consen 64 PLLGALLAAPVCLL--LMHLWFAPS---R---SFWQELAWLF-SAVFWCALGA 107 (125)
T ss_pred HHHHHHHHHHHHHH--HHHHHHccc---c---hHHHHHHHHH-HHHHHHHhHH
Confidence 56677777777766 455555432 2 2334566776 8999997763
No 41
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=24.77 E-value=1.2e+02 Score=22.80 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=18.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018417 1 MGFWTFFEVASMPIVQVLLISVLGALMAT 29 (356)
Q Consensus 1 m~~~~~~~~~l~~vl~vflli~vG~~l~~ 29 (356)
|++.+++..++ +-.++.+.+||+++|
T Consensus 1 M~i~DiiQii~---l~AlI~~pLGyl~~~ 26 (62)
T PF11120_consen 1 MNISDIIQIII---LCALIFFPLGYLARR 26 (62)
T ss_pred CCHHHHHHHHH---HHHHHHHhHHHHHHH
Confidence 78888776543 344566778999883
No 42
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.07 E-value=2.4e+02 Score=22.14 Aligned_cols=22 Identities=14% Similarity=0.073 Sum_probs=18.5
Q ss_pred hhhChHHHHHHHHHHHHhhhhH
Q 018417 260 ELLAPPTLAAIVGFIFGAVVWL 281 (356)
Q Consensus 260 ~~~nPp~~a~i~g~ii~~~~~l 281 (356)
++.||.+|.++++.++.++..+
T Consensus 7 R~kN~~~w~ali~~i~l~vq~~ 28 (84)
T PF04531_consen 7 RFKNKAFWVALISAILLLVQQV 28 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999998877643
No 43
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=23.74 E-value=7.1e+02 Score=24.54 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 018417 44 NKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPK 100 (356)
Q Consensus 44 S~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~~ll~~lv~rl~~~~ 100 (356)
-+-...+..|.+++..++...+.+...+.. .-+..++.+..++++..+++|..
T Consensus 129 l~~~~~~~~pl~~~~~~~~~~~~~~~~d~L----Grl~~ii~~~~l~~~~~~l~~~~ 181 (340)
T PF12794_consen 129 LRWLIWVLVPLLFISIFAENLPDGLARDVL----GRLAFIILLLLLAVFLWRLLRPG 181 (340)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhhhhhH----HHHHHHHHHHHHHHHHHHHHccc
Confidence 344556778988888888765444433321 22334444556777777777653
No 44
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=23.63 E-value=9.7e+02 Score=26.85 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhcc
Q 018417 37 ADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW--W-FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCAS 113 (356)
Q Consensus 37 ~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~--~-~~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f 113 (356)
.+-...+..++..+++|......=.+ .+...+.+. | .+.+..++..+.=++.+++.+++++.+.++ .+..+...
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~vGl~-idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~e--al~lG~lm 389 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAISGLK-TNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFRE--GITLGFLM 389 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhe-eeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 44566778888889999887654333 345544432 1 112222222233334566677777766543 34444445
Q ss_pred CCcchhHHHHH
Q 018417 114 GNLGNLLLIIV 124 (356)
Q Consensus 114 ~Nsg~lglpli 124 (356)
+.-|-+.+.+.
T Consensus 390 ~~kG~~~Lii~ 400 (832)
T PLN03159 390 NTKGLVEMIVL 400 (832)
T ss_pred hcccHHHHHHH
Confidence 44566666554
No 45
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=22.06 E-value=5e+02 Score=22.18 Aligned_cols=89 Identities=13% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhc----cCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH
Q 018417 11 SMPIVQVLLISVLGALMATQY----WNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (356)
Q Consensus 11 l~~vl~vflli~vG~~l~~~r----~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~ 86 (356)
....+.++.+.++..+..+++ ...+..-++-.|+..+.+..+=..+|+...-.. .+++ ..+...+.+++..++.
T Consensus 59 ~~~~~a~~y~~l~~ll~~~~~~~~~~~~l~~~GrmaLT~Yi~qsii~~~lf~~~~l~l-~~~~-~~~~~~~~~~~i~~~q 136 (163)
T PF04235_consen 59 GGPLLALGYVALLILLCQKRPRQRLLRPLAAVGRMALTNYILQSIIGTLLFYGYGLGL-FGHL-SPAQSLLIALGIWVVQ 136 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcccc-cccc-cHHHHHHHHHHHHHHH
Confidence 334455555555555555211 133445566778888888888778886554331 1111 2223344556666777
Q ss_pred HHHHHHHHHHhCCCC
Q 018417 87 GILGWIVVKLLRPKP 101 (356)
Q Consensus 87 ~ll~~lv~rl~~~~~ 101 (356)
.+++.+..|.+|..+
T Consensus 137 ~~~s~~W~~~f~~GP 151 (163)
T PF04235_consen 137 LLFSYLWLRRFRRGP 151 (163)
T ss_pred HHHHHHHHHhcCcCc
Confidence 888888888877543
No 46
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=21.60 E-value=8.3e+02 Score=24.49 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhh
Q 018417 80 AMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (356)
Q Consensus 80 ~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL 127 (356)
++...+.+.++++..|..+.+-++.....+. +-+|.--+.+++.-++
T Consensus 254 ~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft-~aSNnfeLAiAvAi~l 300 (342)
T COG0798 254 LIYFLLMFFISYFIAKALGLPYEDAAALVFT-GASNNFELAIAVAIAL 300 (342)
T ss_pred HHHHHHHHHHHHHHHHHhCCChhhhhceeee-eccccHHHHHHHHHHh
Confidence 4566677888999999999887666555543 3345445566666666
No 47
>PRK01844 hypothetical protein; Provisional
Probab=21.45 E-value=1.6e+02 Score=22.71 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018417 73 WFMPVNVAMTFLIGGILGWIVVKL 96 (356)
Q Consensus 73 ~~~~~~~~l~~ll~~ll~~lv~rl 96 (356)
|...+..+++.+++.++|++++|.
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455567777888888887764
No 48
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=21.19 E-value=5.2e+02 Score=27.12 Aligned_cols=52 Identities=23% Similarity=0.370 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHH
Q 018417 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWW 73 (356)
Q Consensus 17 vflli~vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~ 73 (356)
...++++|.++. -....+. ...=..+.+.+++|.++|..=.+. +.+++.+.+
T Consensus 25 ~v~lil~Gi~lg--~~~~~~~--~~~~~~~~~~~~Lp~lLF~~g~~~-~~~~l~~~~ 76 (525)
T TIGR00831 25 PIALILAGLLLG--LAGLLPE--VPLDREIVLFLFLPPLLFEAAMNT-DLRELRENF 76 (525)
T ss_pred HHHHHHHHHHHH--hccccCC--CCCCHHHHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 355666777776 3322211 011124567799999999876654 666665544
No 49
>PRK01658 holin-like protein; Validated
Probab=21.17 E-value=4.8e+02 Score=21.99 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhHHHHHHhcccCCHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHhC
Q 018417 41 RSLNKMVFTVFTPSLMFASLAKTVTLEEII-SWWFMPVNVAMTFLIGGIL-GWIVVKLLR 98 (356)
Q Consensus 41 ~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~-~~~~~~~~~~l~~ll~~ll-~~lv~rl~~ 98 (356)
+.+-+-.--+|.|+-+ .+... .+.+. +.+.+.+..++++++.+++ |+...++.|
T Consensus 60 ~~Ll~~m~llFVPa~V--Gi~~~--~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l~~ 115 (122)
T PRK01658 60 ETLLAELPLFFIPSAV--GVMNY--GDFLSSKGISLFLVVVISTFVVMIVTGYLTQLLAK 115 (122)
T ss_pred HHHHHHHHHHHHHhhh--HHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456778764 33332 23333 3344444445555554444 454444444
No 50
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=20.43 E-value=3.9e+02 Score=26.67 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcch
Q 018417 39 ARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGN 118 (356)
Q Consensus 39 ~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~~~~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~ 118 (356)
+...+++...|. ++.-+++.-+..++...-...++.+...+.-.++.+...|++|.+-. ....++-.|.|-
T Consensus 270 gs~elgtv~lY~-----~v~vias~Ad~~~i~taP~~i~~gf~il~~h~~v~f~~~KlF~~dL~----~i~~AslAniGG 340 (384)
T COG5505 270 GSQELGTVLLYL-----FVVVIASPADLRLIVTAPLIILFGFIILISHLAVSFAAGKLFRVDLE----EILLASLANIGG 340 (384)
T ss_pred chhhhhHHHHHH-----HHHHhccchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHhccCC
Confidence 456777776664 34445555556666665444555666666667788889999988753 333445667776
Q ss_pred hHHHHHHhh
Q 018417 119 LLLIIVPAI 127 (356)
Q Consensus 119 lglpli~aL 127 (356)
+--.=+.+.
T Consensus 341 ~~sAp~~A~ 349 (384)
T COG5505 341 PTSAPAMAI 349 (384)
T ss_pred ccchhHHHh
Confidence 633333333
No 51
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=20.42 E-value=6.4e+02 Score=29.87 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHh--hhhc-c--C--------------------
Q 018417 78 NVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA--ICHE-Q--G-------------------- 132 (356)
Q Consensus 78 ~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~a--L~~~-~--~-------------------- 132 (356)
+.++.++...++++.++|=--+.+++..... .|-|..+-|+-++.. .+++ + +
T Consensus 931 f~flfllaV~LlsfGVarQaIl~P~e~~~w~---l~R~i~y~PYlmifGeV~a~eID~~~~e~~~~~~p~~~~~s~~~~~ 1007 (1381)
T KOG3614|consen 931 FFFLFLLAVVLLSFGVARQAILRPDEPRHWW---LFRNIFYWPYLMLFGEVPADEIDTCTCEKSFCGEPLRYESSPGNPS 1007 (1381)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCchHH---HHHHHHHHHHHHHhccccHhhhhhhcccccccCCCcccCCCCCCCC
Confidence 3355555566677777763222222333333 267888888877721 0000 0 0
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHhHHHHHHHHHHHHhc
Q 018417 133 SPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQ 170 (356)
Q Consensus 133 ~~fG~~~~~~~~g~~Y~~iy~iv~~il~wT~G~~ll~~ 170 (356)
-++|+. .......+|+++.++++|-+=+.+.+.
T Consensus 1008 c~pg~w-----l~plLl~~yLLv~nILL~NLLIA~Fn~ 1040 (1381)
T KOG3614|consen 1008 CPPGSW-----LTPLLLVIYLLVTNILLVNLLIAMFSY 1040 (1381)
T ss_pred CCCcch-----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012221 245668899999999999998888864
No 52
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.12 E-value=1.8e+02 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.615 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018417 73 WFMPVNVAMTFLIGGILGWIVVK 95 (356)
Q Consensus 73 ~~~~~~~~l~~ll~~ll~~lv~r 95 (356)
|..++...++.+++++.|++++|
T Consensus 4 ~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 4 WLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556677777778877775
Done!