Query 018417
Match_columns 356
No_of_seqs 189 out of 1024
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 14:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 96.2 0.091 3.1E-06 50.4 14.6 52 75-127 230-281 (332)
2 3zux_A Transporter, ASBTNM; tr 13.4 7.6E+02 0.026 22.7 12.7 104 1-115 6-115 (332)
3 2l8s_A Integrin alpha-1; trans 11.8 3.9E+02 0.013 18.5 4.8 25 72-96 9-33 (54)
4 2k1k_A Ephrin type-A receptor 8.5 4E+02 0.014 16.8 3.5 20 9-28 16-35 (38)
5 2knc_A Integrin alpha-IIB; tra 7.9 5.6E+02 0.019 17.6 4.9 25 72-96 12-36 (54)
6 2jwa_A Receptor tyrosine-prote 6.8 5.8E+02 0.02 16.8 4.2 24 9-34 17-40 (44)
7 1w2w_A 5-methylthioribose-1-ph 6.3 1.4E+02 0.0048 26.4 0.6 13 312-324 180-192 (211)
8 1nov_D Nodamura virus coat pro 6.2 6.3E+02 0.021 16.6 3.9 14 245-258 2-15 (44)
9 1vf5_F Protein PET M; photosyn 5.7 6.1E+02 0.021 15.9 3.9 21 76-96 9-29 (35)
10 1q90_M Cytochrome B6F complex 5.1 7.1E+02 0.024 16.0 4.4 23 75-97 9-31 (39)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.20 E-value=0.091 Score=50.40 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCCcchhHHHHHHhh
Q 018417 75 MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (356)
Q Consensus 75 ~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~Nsg~lglpli~aL 127 (356)
+.+..++..+++++++|.++|.+|.+++++....+.+...|+ -+++++....
T Consensus 230 v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~ 281 (332)
T 3zux_A 230 IFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH 281 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH
Confidence 334456677789999999999999999999999988888898 5999999888
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=13.41 E-value=7.6e+02 Score=22.71 Aligned_cols=104 Identities=12% Similarity=0.018 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHH--HHHHHhhhccCcCChhHHHHHHHHHHHHHhhHHHHHHhcccCCHHHHHHH----HH
Q 018417 1 MGFWTFFEVASMPIVQVLLISV--LGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISW----WF 74 (356)
Q Consensus 1 m~~~~~~~~~l~~vl~vflli~--vG~~l~~~r~gil~~~~~~~LS~Lv~~v~lPaLIF~sl~~~~t~~~l~~~----~~ 74 (356)
|..++.+...++.-+++.++.+ +|++.- .. .+.++. .....+..++|..-.+ .+.+++.+. ..
T Consensus 6 m~~l~~~~~~l~~~~~l~i~~~~~lg~~~P--~~-------~~~~~~-~i~~~l~~~mf~~G~~-l~~~~l~~~~~~~~~ 74 (332)
T 3zux_A 6 MNILSKISSFIGKTFSLWAALFAAAAFFAP--DT-------FKWAGP-YIPWLLGIIMFGMGLT-LKPSDFDILFKHPKV 74 (332)
T ss_dssp -CHHHHHHHHHHHTHHHHHHHHHHHHHHCG--GG-------TGGGGG-GHHHHHHHHHHHHHHH-CCGGGGHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hh-------hhhhHH-HHHHHHHHHHHHHHhC-CCHHHHHHHHhCcHH
Confidence 4555555555555555554443 444332 11 112222 2334566666654443 355555432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCccchhhhhhccCC
Q 018417 75 MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGN 115 (356)
Q Consensus 75 ~~~~~~l~~ll~~ll~~lv~rl~~~~~~~~~~~~~~~~f~N 115 (356)
.....+...++.-++++.+.+++..++.........+..+-
T Consensus 75 ~~~~l~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~ 115 (332)
T 3zux_A 75 VIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPG 115 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCc
Confidence 23333445556667888888888776655544444444443
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=11.82 E-value=3.9e+02 Score=18.46 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018417 72 WWFMPVNVAMTFLIGGILGWIVVKL 96 (356)
Q Consensus 72 ~~~~~~~~~l~~ll~~ll~~lv~rl 96 (356)
+|.+.+..+...++..++.+++-|.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3544555455555555555555554
No 4
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=8.51 E-value=4e+02 Score=16.81 Aligned_cols=20 Identities=10% Similarity=-0.034 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 018417 9 VASMPIVQVLLISVLGALMA 28 (356)
Q Consensus 9 ~~l~~vl~vflli~vG~~l~ 28 (356)
.++..+.-+.++.+++|++.
T Consensus 16 iVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 16 VIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHe
Confidence 45556666777888888887
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.93 E-value=5.6e+02 Score=17.59 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 018417 72 WWFMPVNVAMTFLIGGILGWIVVKL 96 (356)
Q Consensus 72 ~~~~~~~~~l~~ll~~ll~~lv~rl 96 (356)
+|.+.+..+...++..++.+++-|.
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3555555455555555555555543
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=6.79 E-value=5.8e+02 Score=16.77 Aligned_cols=24 Identities=21% Similarity=0.181 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCc
Q 018417 9 VASMPIVQVLLISVLGALMATQYWNL 34 (356)
Q Consensus 9 ~~l~~vl~vflli~vG~~l~~~r~gi 34 (356)
.+...++-+.+...+|++++ |+..
T Consensus 17 ~vVGvll~vi~~l~~~~~~R--RR~~ 40 (44)
T 2jwa_A 17 AVVGILLVVVLGVVFGILIK--RRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHCS
T ss_pred HHHHHHHHHHHHHHHHhhee--hhhh
Confidence 34443333334445566777 6654
No 7
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=6.30 E-value=1.4e+02 Score=26.43 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=11.1
Q ss_pred hhhcccccccccc
Q 018417 312 YCFVGWLATSSFS 324 (356)
Q Consensus 312 ~~~~~~~~~~~~~ 324 (356)
+|.-|||||+.+.
T Consensus 180 HCNtG~LAT~g~G 192 (211)
T 1w2w_A 180 ICNTGSLATSGYG 192 (211)
T ss_dssp CSCCSGGGSSSSC
T ss_pred ECCCchHhhcCcc
Confidence 8999999998653
No 8
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=6.24 E-value=6.3e+02 Score=16.59 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=9.1
Q ss_pred hhhHHHHHHHHHHH
Q 018417 245 SFWKRSLEFLHQLL 258 (356)
Q Consensus 245 ~~~~~~~~~~~~~~ 258 (356)
++|.|++.++++.+
T Consensus 2 ~mWErVk~ilks~l 15 (44)
T 1nov_D 2 TFWERVRSILKSGL 15 (44)
T ss_pred cHHHHHHHHHHHHH
Confidence 56877776665544
No 9
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=5.72 E-value=6.1e+02 Score=15.90 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018417 76 PVNVAMTFLIGGILGWIVVKL 96 (356)
Q Consensus 76 ~~~~~l~~ll~~ll~~lv~rl 96 (356)
.+..+..++++..+++++.|+
T Consensus 9 A~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 9 ALLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 444556667777888887765
No 10
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=5.13 E-value=7.1e+02 Score=15.99 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 018417 75 MPVNVAMTFLIGGILGWIVVKLL 97 (356)
Q Consensus 75 ~~~~~~l~~ll~~ll~~lv~rl~ 97 (356)
..+.++..++++..+++++.|+-
T Consensus 9 ~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455666777888888888774
Done!