Query 018417
Match_columns 356
No_of_seqs 189 out of 1024
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 14:56:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018417.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018417hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 13.4 1.2E+02 0.0084 17.3 3.5 28 259-286 5-32 (34)
2 d1x64a2 g.39.1.3 (A:53-83) PDZ 9.3 22 0.0016 20.3 -0.7 13 301-313 11-23 (31)
3 d1v54g_ f.23.2.1 (G:) Mitochon 8.6 87 0.0064 21.9 2.2 22 39-60 12-33 (84)
4 d1x62a1 g.39.1.3 (A:43-73) PDZ 8.5 33 0.0024 19.6 -0.2 16 299-314 9-24 (31)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 7.5 5.3E+02 0.038 20.7 11.5 17 12-28 294-310 (447)
6 d2iuba2 f.17.3.1 (A:286-349) M 7.0 2.5E+02 0.018 17.7 4.0 24 39-63 5-28 (64)
7 d1zoqc1 a.153.1.1 (C:2065-2111 6.3 1.7E+02 0.012 17.8 2.4 15 257-271 22-37 (47)
8 d1q90r_ f.23.12.1 (R:) ISP sub 6.3 2.8E+02 0.02 16.4 3.5 28 259-286 10-37 (39)
9 d2e74f1 f.23.25.1 (F:1-32) Pet 5.7 2.6E+02 0.019 15.4 3.9 24 146-169 5-28 (32)
10 d1mmca_ g.3.1.2 (A:) Antimicro 4.2 1E+02 0.0076 16.8 0.3 11 319-329 14-24 (30)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.37 E-value=1.2e+02 Score=17.29 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=22.3
Q ss_pred HhhhChHHHHHHHHHHHHhhhhHhHhhc
Q 018417 259 EELLAPPTLAAIVGFIFGAVVWLRNLII 286 (356)
Q Consensus 259 ~~~~nPp~~a~i~g~ii~~~~~l~~~~~ 286 (356)
++++|=.+.+.+-|..++..-|+-+-|+
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcC
Confidence 5788889999999999998876655554
No 2
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.25 E-value=22 Score=20.33 Aligned_cols=13 Identities=46% Similarity=1.142 Sum_probs=9.8
Q ss_pred Hhchhhhhhhhhh
Q 018417 301 ILGYVFVSAQFYC 313 (356)
Q Consensus 301 ~lG~~~~~~~~~~ 313 (356)
.=||.||..|.||
T Consensus 11 qrG~Ffv~~~lyC 23 (31)
T d1x64a2 11 QKGYFFVEGELYC 23 (31)
T ss_dssp TSCCEEETTEEEC
T ss_pred hcceEEeccEEee
Confidence 3467888888888
No 3
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.61 E-value=87 Score=21.93 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHh
Q 018417 39 ARRSLNKMVFTVFTPSLMFASL 60 (356)
Q Consensus 39 ~~~~LS~Lv~~v~lPaLIF~sl 60 (356)
+.+.--++.+.+++||++...+
T Consensus 12 ~~~lWkkis~~va~P~i~l~~~ 33 (84)
T d1v54g_ 12 GARTWRFLTFGLALPSVALCTL 33 (84)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455557777777777765443
No 4
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.45 E-value=33 Score=19.59 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=12.2
Q ss_pred HHHhchhhhhhhhhhh
Q 018417 299 IEILGYVFVSAQFYCF 314 (356)
Q Consensus 299 ~~~lG~~~~~~~~~~~ 314 (356)
++.=||.||..|.||-
T Consensus 9 LKqrG~Ffve~~lyCE 24 (31)
T d1x62a1 9 LKQKGHFFVEDQIYCE 24 (31)
T ss_dssp HHHHCCEESSSCEECH
T ss_pred hhhcceEEeccEEehh
Confidence 3556788999999983
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=7.50 E-value=5.3e+02 Score=20.74 Aligned_cols=17 Identities=6% Similarity=-0.080 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 018417 12 MPIVQVLLISVLGALMA 28 (356)
Q Consensus 12 ~~vl~vflli~vG~~l~ 28 (356)
..+..++..+..|++..
T Consensus 294 ~~~~~~~~~~~~g~~~~ 310 (447)
T d1pw4a_ 294 YEYAGIPGTLLCGWMSD 310 (447)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhh
Confidence 33444445555666665
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.96 E-value=2.5e+02 Score=17.67 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhccc
Q 018417 39 ARRSLNKMVFTVFTPSLMFASLAKT 63 (356)
Q Consensus 39 ~~~~LS~Lv~~v~lPaLIF~sl~~~ 63 (356)
..+.|+-+. -+++|.-+++++...
T Consensus 5 ~mk~lT~it-~iflP~t~i~gifGM 28 (64)
T d2iuba2 5 VMKVLTIIA-TIFMPLTFIAGIYGM 28 (64)
T ss_dssp HHHHHHHHH-HHHHHHHHHTTSCC-
T ss_pred HHHHHHHHH-HHHHHHHHHHhhhcc
Confidence 445555444 478999888888763
No 7
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.35 E-value=1.7e+02 Score=17.80 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=9.9
Q ss_pred HHHhh-hChHHHHHHH
Q 018417 257 LLEEL-LAPPTLAAIV 271 (356)
Q Consensus 257 ~~~~~-~nPp~~a~i~ 271 (356)
.+..+ -||.++|+++
T Consensus 22 vL~ILksNP~lmaaFI 37 (47)
T d1zoqc1 22 VLNILKSNPQLMAAFI 37 (47)
T ss_dssp HHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHH
Confidence 34444 3899998874
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.25 E-value=2.8e+02 Score=16.35 Aligned_cols=28 Identities=4% Similarity=-0.115 Sum_probs=20.3
Q ss_pred HhhhChHHHHHHHHHHHHhhhhHhHhhc
Q 018417 259 EELLAPPTLAAIVGFIFGAVVWLRNLII 286 (356)
Q Consensus 259 ~~~~nPp~~a~i~g~ii~~~~~l~~~~~ 286 (356)
|+++|=.+.+++-+-..++..+.-.+|+
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFFV 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccchhhhhhccceeEEec
Confidence 4678888888888888877766555544
No 9
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.67 E-value=2.6e+02 Score=15.38 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Q 018417 146 LSYASFSMALGGFFIWSYSYQLIK 169 (356)
Q Consensus 146 ~~Y~~iy~iv~~il~wT~G~~ll~ 169 (356)
+.|+.+....-.+.-|.+|..++.
T Consensus 5 il~aa~lsfglifvgwglgalllk 28 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGVLLLK 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHHHHhh
Confidence 455666666666778999998875
No 10
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=4.20 E-value=1e+02 Score=16.76 Aligned_cols=11 Identities=45% Similarity=1.066 Sum_probs=7.6
Q ss_pred cccccccCCCc
Q 018417 319 ATSSFSYCRDG 329 (356)
Q Consensus 319 ~~~~~~~~~~~ 329 (356)
..|.|.||+..
T Consensus 14 ccsqfgycg~g 24 (30)
T d1mmca_ 14 CCSQFGYCGKG 24 (30)
T ss_dssp EECTTSCEESS
T ss_pred hhhhcCcccCC
Confidence 34778888764
Done!