Query 018419
Match_columns 356
No_of_seqs 192 out of 420
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 14:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 1.4E-29 4.9E-34 194.8 6.4 62 13-75 1-62 (64)
2 2cu7_A KIAA1915 protein; nucle 88.1 1.2 4.1E-05 33.4 6.1 54 15-74 5-58 (72)
3 2yum_A ZZZ3 protein, zinc fing 87.8 0.84 2.9E-05 34.3 5.1 57 15-74 4-63 (75)
4 1x41_A Transcriptional adaptor 87.1 1.6 5.3E-05 31.7 6.0 51 15-71 4-55 (60)
5 2hzd_A Transcriptional enhance 85.4 1.2 4.1E-05 35.8 5.0 58 15-74 2-76 (82)
6 2yus_A SWI/SNF-related matrix- 85.0 1.8 6E-05 33.7 5.7 46 18-69 17-62 (79)
7 2xag_B REST corepressor 1; ami 82.0 2.1 7.1E-05 43.7 6.4 54 16-75 377-430 (482)
8 2iw5_B Protein corest, REST co 80.9 2.4 8.3E-05 39.8 5.9 56 13-74 127-182 (235)
9 2cqq_A RSGI RUH-037, DNAJ homo 78.7 2.6 8.9E-05 32.4 4.5 50 17-72 6-58 (72)
10 2elk_A SPCC24B10.08C protein; 69.4 4.7 0.00016 29.1 3.7 47 19-70 9-56 (58)
11 2cqr_A RSGI RUH-043, DNAJ homo 66.6 11 0.00037 29.0 5.4 50 19-71 18-68 (73)
12 3sjm_A Telomeric repeat-bindin 66.3 14 0.00049 27.3 5.9 53 12-67 4-56 (64)
13 1ity_A TRF1; helix-turn-helix, 63.3 16 0.00054 26.9 5.7 52 15-70 6-58 (69)
14 2ba2_A D12_ORF131, hypothetica 62.2 29 0.00098 28.1 7.2 42 115-159 32-73 (85)
15 2d9a_A B-MYB, MYB-related prot 59.3 8.1 0.00028 27.6 3.3 51 14-69 3-53 (60)
16 1guu_A C-MYB, MYB proto-oncoge 57.3 24 0.00082 24.3 5.4 46 19-69 3-48 (52)
17 1gvd_A MYB proto-oncogene prot 55.3 21 0.00073 24.6 4.9 46 19-69 3-48 (52)
18 3uun_A Dystrophin; triple heli 54.2 42 0.0014 25.3 6.8 56 131-186 38-93 (119)
19 3uul_A Utrophin; spectrin repe 51.3 56 0.0019 24.6 7.2 55 132-186 39-93 (118)
20 2kes_A Synphilin-1; synphillin 49.9 14 0.00049 26.8 3.2 24 126-149 15-42 (48)
21 2yqk_A Arginine-glutamic acid 48.1 17 0.00057 26.8 3.5 47 15-66 5-51 (63)
22 1wgx_A KIAA1903 protein; MYB D 47.6 26 0.00089 27.2 4.7 49 21-72 10-59 (73)
23 2lm1_A Lysine-specific demethy 43.9 8.1 0.00028 30.7 1.3 48 24-72 44-97 (107)
24 2dim_A Cell division cycle 5-l 43.6 62 0.0021 23.6 6.1 51 14-69 4-54 (70)
25 4eef_G F-HB80.4, designed hema 42.5 9.9 0.00034 30.0 1.6 47 18-67 19-66 (74)
26 2cjj_A Radialis; plant develop 41.2 41 0.0014 26.9 5.1 49 19-72 8-59 (93)
27 1c20_A DEAD ringer protein; DN 40.2 10 0.00034 31.4 1.4 47 25-72 53-106 (128)
28 2eqr_A N-COR1, N-COR, nuclear 40.1 24 0.00082 25.6 3.3 46 15-66 8-53 (61)
29 2eqy_A RBP2 like, jumonji, at 39.1 12 0.00041 30.9 1.7 49 25-74 43-97 (122)
30 2cxy_A BAF250B subunit, HBAF25 39.0 11 0.00036 31.2 1.3 48 25-73 52-105 (125)
31 2jrz_A Histone demethylase jar 37.5 11 0.00039 30.7 1.3 49 25-74 41-95 (117)
32 2li6_A SWI/SNF chromatin-remod 37.2 10 0.00035 30.9 1.0 48 25-75 50-101 (116)
33 2jxj_A Histone demethylase jar 34.1 12 0.0004 29.3 0.8 46 25-71 37-88 (96)
34 1ig6_A MRF-2, modulator recogn 33.9 9.7 0.00033 30.4 0.3 50 24-74 33-89 (107)
35 1w0t_A Telomeric repeat bindin 33.3 1.2E+02 0.004 20.9 5.9 48 19-69 2-49 (53)
36 2crg_A Metastasis associated p 30.5 45 0.0015 25.1 3.5 48 14-66 3-50 (70)
37 2rq5_A Protein jumonji; develo 29.7 20 0.00069 29.9 1.6 49 25-74 43-98 (121)
38 2kk0_A AT-rich interactive dom 28.4 22 0.00076 30.1 1.6 47 25-72 65-118 (145)
39 1kkx_A Transcription regulator 28.3 21 0.00073 29.6 1.5 47 25-74 49-99 (123)
40 2aje_A Telomere repeat-binding 27.7 1.1E+02 0.0036 25.1 5.5 51 15-68 9-61 (105)
41 1gv2_A C-MYB, MYB proto-oncoge 26.5 1E+02 0.0035 23.8 5.0 46 19-69 4-49 (105)
42 3ok8_A Brain-specific angiogen 25.7 1.1E+02 0.0037 28.3 5.8 43 115-157 71-122 (222)
43 2k9n_A MYB24; R2R3 domain, DNA 24.9 1.1E+02 0.0037 24.0 5.0 48 18-71 52-99 (107)
44 2din_A Cell division cycle 5-l 22.6 2E+02 0.0069 20.6 5.7 49 16-71 6-54 (66)
45 1h8a_C AMV V-MYB, MYB transfor 22.0 1.6E+02 0.0054 23.6 5.5 49 16-69 24-72 (128)
46 1gv2_A C-MYB, MYB proto-oncoge 20.6 2.2E+02 0.0074 21.9 5.9 46 18-69 55-100 (105)
47 3kdq_A Uncharacterized conserv 20.4 83 0.0028 27.3 3.7 28 114-148 3-30 (154)
48 2ltp_A Nuclear receptor corepr 22.7 27 0.00092 27.2 0.0 51 16-72 13-63 (89)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=1.4e-29 Score=194.83 Aligned_cols=62 Identities=42% Similarity=0.792 Sum_probs=59.1
Q ss_pred ccCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhcccc
Q 018419 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75 (356)
Q Consensus 13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~~~~ 75 (356)
++++|||++||+|||++||+||++|| .++||||.||++|+|+|||++||+|||||||+..++
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999 799999999999999999999999999999998764
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=88.06 E-value=1.2 Score=33.40 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=42.6
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhccc
Q 018419 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74 (356)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~~~ 74 (356)
+...+-.||+|=++.|+++|..+|- .=..|-+. +||=|-.+|+.|.++|-....
T Consensus 5 p~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 5 SSGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp CSSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHHS
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999992 33556565 478999999999999855443
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.76 E-value=0.84 Score=34.28 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=42.6
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCCCc---hhHHhhhCCCCccHHhHHHhhhhhhhccc
Q 018419 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATP---KSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74 (356)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtP---K~IL~lM~v~GLT~~hVKSHLQKYRl~~~ 74 (356)
+...+-.||+|=+.+|++||..+| .+...| ..|-+.| +|=|-.+|+.|.++|-....
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHH
Confidence 445566899999999999999999 222222 3444554 68999999999999976543
No 4
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=87.12 E-value=1.6 Score=31.75 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=40.5
Q ss_pred CCCCccccChHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCccHHhHHHhhhhhhh
Q 018419 15 DAKPRLKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 (356)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl 71 (356)
..-.+-.||+|=..+|++||..+| +- =+.|-+.| +|=|-.+++.|.++|-.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGN----WQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTC----HHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCc----HHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 445667899999999999999999 22 35666666 67899999999988754
No 5
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=85.38 E-value=1.2 Score=35.76 Aligned_cols=58 Identities=26% Similarity=0.355 Sum_probs=37.5
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhh---h-C-----------C--CCccHHhHHHhhhhhhhccc
Q 018419 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRV---M-G-----------I--PGLTLYHLKSHLQKYRLGKS 74 (356)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~l---M-~-----------v--~GLT~~hVKSHLQKYRl~~~ 74 (356)
|.+..-+|.++|-..|++|+...-=.... |-+|.. | | . +-=|+.+|.||||.-|..+.
T Consensus 2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 2 DNDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp CGGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 45567789999999999999977411122 222211 1 1 1 23477889999998765544
No 6
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=84.99 E-value=1.8 Score=33.68 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=38.5
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018419 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (356)
Q Consensus 18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY 69 (356)
.+-.||++=+.+|++||...|+- =+.|-+.| ++=|..+++.|.++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G~~----W~~IA~~v--~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYKDD----WNKVSEHV--GSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSSSC----HHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhCCC----HHHHHHHc--CCCCHHHHHHHHHHh
Confidence 46789999999999999999942 36677766 478999999999977
No 7
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=82.00 E-value=2.1 Score=43.66 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=44.5
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhcccc
Q 018419 16 AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75 (356)
Q Consensus 16 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~~~~ 75 (356)
.+..-+||++=|..|++||...|- .=+.|-++++- =|..+|++|.++||.....
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTTH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHHhCh
Confidence 456789999999999999999983 35677777665 4999999999999887654
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=80.88 E-value=2.4 Score=39.75 Aligned_cols=56 Identities=21% Similarity=0.286 Sum_probs=45.4
Q ss_pred ccCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhccc
Q 018419 13 STDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74 (356)
Q Consensus 13 st~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~~~ 74 (356)
.+..+..-+||+|=++.|++|+...|-- =..|-++ |++=|..+|++|..+||....
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGKD----W~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGRD----FQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 4445778899999999999999999922 4566666 578999999999999986644
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=78.68 E-value=2.6 Score=32.36 Aligned_cols=50 Identities=14% Similarity=0.309 Sum_probs=38.7
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCCCchh---HHhhhCCCCccHHhHHHhhhhhhhc
Q 018419 17 KPRLKWTPELHQRFVDAVNHLGGPDKATPKS---LMRVMGIPGLTLYHLKSHLQKYRLG 72 (356)
Q Consensus 17 KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~v~GLT~~hVKSHLQKYRl~ 72 (356)
...-.||.|=+.+|+.|+..+++ -||.+ |-..| |=|..+|+.|.+++.-.
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 44457999999999999999983 35654 55555 67999999998877544
No 10
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=69.38 E-value=4.7 Score=29.07 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=36.1
Q ss_pred ccccChHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCccHHhHHHhhhhhh
Q 018419 19 RLKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (356)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYR 70 (356)
+-.||++=..++++||...| +- =+.|-+.|+. |=|-.+++.|.++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~----W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN----WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC----HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC----HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 45699999999999999999 32 3455555531 678889999888774
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=66.63 E-value=11 Score=29.01 Aligned_cols=50 Identities=8% Similarity=0.101 Sum_probs=38.9
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCCchhHHhhh-CCCCccHHhHHHhhhhhhh
Q 018419 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVM-GIPGLTLYHLKSHLQKYRL 71 (356)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~v~GLT~~hVKSHLQKYRl 71 (356)
+-.||++=...|+.||..+|. -+|..--++= -|||=|-.+|+.|.+.+.-
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 346999999999999999982 2676544332 3589999999999987643
No 12
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=66.26 E-value=14 Score=27.30 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=36.3
Q ss_pred eccCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhh
Q 018419 12 LSTDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQ 67 (356)
Q Consensus 12 lst~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQ 67 (356)
+++....|-.||+|=-++++++|.+.|. . .=+.|.+.++++|=|-.+++-+..
T Consensus 4 ~~~~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw~ 56 (64)
T 3sjm_A 4 MTTNITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRWR 56 (64)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHHH
Confidence 3455667789999999999999999992 1 145677777777777777775443
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=63.30 E-value=16 Score=26.87 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=40.7
Q ss_pred CCCCccccChHHHHHHHHHHHHhC-CCCCCCchhHHhhhCCCCccHHhHHHhhhhhh
Q 018419 15 DAKPRLKWTPELHQRFVDAVNHLG-GPDKATPKSLMRVMGIPGLTLYHLKSHLQKYR 70 (356)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYR 70 (356)
.+++|-.||+|=-...+++|..+| |- =..|...|+..|=|-.+++-+...|-
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~----W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGN----WSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSC----HHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCc----HHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 467888999999999999999999 22 36677777654778888887766653
No 14
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=62.15 E-value=29 Score=28.12 Aligned_cols=42 Identities=33% Similarity=0.381 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 018419 115 LQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQGKYLQSVLKKA 159 (356)
Q Consensus 115 ~qI~EALr~QmEVQrrLHEQLEVQRhLQlRIEAQGKYLQsiLEKA 159 (356)
..|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+--
T Consensus 32 ~kie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~tL 73 (85)
T 2ba2_A 32 TVVMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEAL 73 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 557788887766555555665 888999999999999999843
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=59.27 E-value=8.1 Score=27.60 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=38.0
Q ss_pred cCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018419 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (356)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY 69 (356)
.+...|-.||+|=.++++++|.++|- ..=..|-+.| +|=|-.+++.|..+|
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 34567889999999999999999981 1124555554 677888888887765
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=57.30 E-value=24 Score=24.29 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=35.4
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018419 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (356)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY 69 (356)
|-.||+|=...++++|..+|. ..=+.|-+.| ||=|-.+++.|..+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999982 1235565554 678888888887765
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=55.33 E-value=21 Score=24.61 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=34.2
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018419 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (356)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY 69 (356)
+-.||+|=...++++|.+.|-. .=..|-+.| +|=|-.+++.|...|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~---~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC---hHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 4579999999999999999820 123454544 678888888887766
No 18
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=54.22 E-value=42 Score=25.26 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCCchhhhhHHHHHHHHHh
Q 018419 131 LHEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSM 186 (356)
Q Consensus 131 LHEQLEVQRhLQlRIEAQGKYLQsiLEKAqe~La~~~~~~~gieaakaeLseL~s~ 186 (356)
+..|++-++.|+--|+++..-+.+|.+.|++-+.....++.....-+..+.+|...
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~r 93 (119)
T 3uun_A 38 VKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSR 93 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34455566777788888999999999999988765444443333344455555443
No 19
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=51.34 E-value=56 Score=24.63 Aligned_cols=55 Identities=15% Similarity=0.170 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCCchhhhhHHHHHHHHHh
Q 018419 132 HEQIEVQRHLQLRIEAQGKYLQSVLKKAQETLAGYSSSSAGVELAKAELSQLVSM 186 (356)
Q Consensus 132 HEQLEVQRhLQlRIEAQGKYLQsiLEKAqe~La~~~~~~~gieaakaeLseL~s~ 186 (356)
..||+-.+.|+--|.++..-+.+|.+.|++-+.....++.....-+..|.+|...
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~r 93 (118)
T 3uul_A 39 KEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNAR 93 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Confidence 3445556677778888999999999999987765444443333445556665554
No 20
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=49.88 E-value=14 Score=26.83 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=18.0
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHhh
Q 018419 126 EVQRKLHEQ----IEVQRHLQLRIEAQG 149 (356)
Q Consensus 126 EVQrrLHEQ----LEVQRhLQlRIEAQG 149 (356)
.+-|.|+|| +.+|.+||.-+|+|.
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455677777 568999998888873
No 21
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.10 E-value=17 Score=26.79 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=31.6
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhh
Q 018419 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHL 66 (356)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHL 66 (356)
+...+-.||++=|..|.+|+...|= + =..|-+.| |+.=|..+|..+.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK-N---FFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS-C---HHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc-c---HHHHHHHH-cCCCcHHHHHHHH
Confidence 4455679999999999999999982 1 12333211 5667777776444
No 22
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=47.63 E-value=26 Score=27.20 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=38.3
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCCchhHHhhh-CCCCccHHhHHHhhhhhhhc
Q 018419 21 KWTPELHQRFVDAVNHLGGPDKATPKSLMRVM-GIPGLTLYHLKSHLQKYRLG 72 (356)
Q Consensus 21 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~v~GLT~~hVKSHLQKYRl~ 72 (356)
.||.+=+.+|..|+..++ +.+|-+--++= -|+|=|.+.|..|......+
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 599999999999999886 34787654432 47899999999888766433
No 23
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=43.87 E-value=8.1 Score=30.75 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc--HHhHHHhhhhhhhc
Q 018419 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLG 72 (356)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT--~~hVKSHLQKYRl~ 72 (356)
-+||.-|.. |..+||.++.+- +.|.+.||+|.-| -..++.|..||=+.
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 378888865 788999877654 4678889997533 35678888887543
No 24
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.59 E-value=62 Score=23.60 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=38.4
Q ss_pred cCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018419 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (356)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY 69 (356)
.+...|-.||+|=.++++++|..+|- ..=+.|-..|+ |=|-.+++-|...|
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 34556778999999999999999981 12356666664 77888888777766
No 25
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=42.49 E-value=9.9 Score=30.03 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=35.5
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCCchhHHhhh-CCCCccHHhHHHhhh
Q 018419 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVM-GIPGLTLYHLKSHLQ 67 (356)
Q Consensus 18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM-~v~GLT~~hVKSHLQ 67 (356)
.--.||.+=.+.|..|+...+ +-||.+--++- -|||=|...|+.|.|
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 344699999999999998874 55676654443 368999999999987
No 26
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=41.24 E-value=41 Score=26.89 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=37.9
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCCchh---HHhhhCCCCccHHhHHHhhhhhhhc
Q 018419 19 RLKWTPELHQRFVDAVNHLGGPDKATPKS---LMRVMGIPGLTLYHLKSHLQKYRLG 72 (356)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~v~GLT~~hVKSHLQKYRl~ 72 (356)
.-.||+|=...|+.|+..+| .+ +|.+ |-.. |||=|-.+|+.|.+.+.-.
T Consensus 8 ~~~WT~eEd~~L~~al~~~~-~~--~~~rW~~IA~~--vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYD-KD--TPDRWANVARA--VEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSC-TT--CTTHHHHHHHH--STTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CC--CCchHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 44799999999999999998 22 5643 4343 4799999999999887533
No 27
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=40.24 E-value=10 Score=31.40 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCc-c--HHhHHHhhhhhhhc
Q 018419 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGL-T--LYHLKSHLQKYRLG 72 (356)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GL-T--~~hVKSHLQKYRl~ 72 (356)
+||.-|.. |..+||.++.+- +.|.+.||+|.- | ...++.|..||=+.
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 78888865 789999877654 567888998752 2 46788888888554
No 28
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.12 E-value=24 Score=25.61 Aligned_cols=46 Identities=11% Similarity=-0.003 Sum_probs=33.8
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhh
Q 018419 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHL 66 (356)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHL 66 (356)
.++..-.||++=|+.|++|+...|- + =..|-.+ +|+=|..+|.-|.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk--~--w~~Ia~~--l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK--N--FGLIASY--LERKSVPDCVLYY 53 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT--C--HHHHHHH--CTTSCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC--C--HHHHHHH--cCCCCHHHHHHHH
Confidence 3566789999999999999999982 1 2444443 5678888877553
No 29
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.07 E-value=12 Score=30.88 Aligned_cols=49 Identities=18% Similarity=0.134 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc--HHhHHHhhhhhhhccc
Q 018419 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLGKS 74 (356)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT--~~hVKSHLQKYRl~~~ 74 (356)
+|++-|.. |..+||.++.+- +.|.+.||+|.-+ ...++.|..||=+...
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE 97 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYN 97 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHH
Confidence 78887755 889999876554 5678899997533 2578888888855433
No 30
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=38.97 E-value=11 Score=31.20 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc--HHhHHHhhhhhhhcc
Q 018419 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLGK 73 (356)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT--~~hVKSHLQKYRl~~ 73 (356)
+||.-|.. |..+||.++.+- +.|.+.||++.-| -..++.|..||=+..
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~y 105 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAF 105 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 68887755 789999876653 4678899998643 356788888775543
No 31
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=37.49 E-value=11 Score=30.73 Aligned_cols=49 Identities=16% Similarity=0.088 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc--HHhHHHhhhhhhhccc
Q 018419 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRLGKS 74 (356)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT--~~hVKSHLQKYRl~~~ 74 (356)
+|+.-|.. |..+||.++.+- +.|.+.||+|.-| ...++.|..||=+...
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 68887755 789999876654 5678899987433 3568888888855433
No 32
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.22 E-value=10 Score=30.89 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCccHHhHHHhhhhhhhcccc
Q 018419 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLTLYHLKSHLQKYRLGKSQ 75 (356)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT~~hVKSHLQKYRl~~~~ 75 (356)
+|+.-|. +|..+||.++.+. +.|.+.||+|. -..++.|..||=+....
T Consensus 50 DL~~Ly~-~V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~yE~ 101 (116)
T 2li6_A 50 NLFYLYM-LVQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLPYER 101 (116)
T ss_dssp STTHHHH-HHHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHSHHHH
T ss_pred cHHHHHH-HHHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHHHHHH
Confidence 6777775 4789999877654 57789999988 67899999988665443
No 33
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=34.13 E-value=12 Score=29.26 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc--HHhHHHhhhhhhh
Q 018419 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT--LYHLKSHLQKYRL 71 (356)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT--~~hVKSHLQKYRl 71 (356)
+|+.-|. +|..+||.++.+- +.|.+.|++|.-+ ...++.|..||=+
T Consensus 37 DL~~Ly~-~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 37 DLYALSK-IVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp CCHHHHH-HHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred cHHHHHH-HHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 6777775 4789999877654 5678889986532 3467777777743
No 34
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=33.94 E-value=9.7 Score=30.42 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCc-c--HHhHHHhhhhhhhccc
Q 018419 24 PELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGL-T--LYHLKSHLQKYRLGKS 74 (356)
Q Consensus 24 ~ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GL-T--~~hVKSHLQKYRl~~~ 74 (356)
-+|+.-|.. |..+||.++.+- +.|.+.||++.- | -.+++.|..||=+...
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE 89 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYE 89 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 378887755 789999887664 467888998652 2 2678999888855544
No 35
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=33.27 E-value=1.2e+02 Score=20.94 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=35.1
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018419 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (356)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY 69 (356)
|-.||+|=.+..+++|...|. ..=+.|.+.|+..|=|-.+++-+...|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999991 123567777765466777777665544
No 36
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=30.49 E-value=45 Score=25.06 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=34.0
Q ss_pred cCCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhh
Q 018419 14 TDAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHL 66 (356)
Q Consensus 14 t~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHL 66 (356)
..++..-.||++=|..|.+|+...|= + =..|-+. -||+=|...|..+.
T Consensus 3 ~~r~~~~~WT~eE~~~Fe~~l~~yGK-d---f~~I~~~-~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 3 SGSSGMEEWSASEACLFEEALEKYGK-D---FNDIRQD-FLPWKSLTSIIEYY 50 (70)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHTCS-C---HHHHHHT-TCSSSCHHHHHHHH
T ss_pred CcccCCCCCCHHHHHHHHHHHHHhCc-c---HHHHHHH-HcCCCCHHHHHHHH
Confidence 44567779999999999999999982 2 2333321 16777877777665
No 37
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=29.69 E-value=20 Score=29.87 Aligned_cols=49 Identities=27% Similarity=0.429 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCcc---HHhHHHhhhhhhhccc
Q 018419 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLT---LYHLKSHLQKYRLGKS 74 (356)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT---~~hVKSHLQKYRl~~~ 74 (356)
+|+.-| .+|..+||.++.|- +.|...|++|... ...++.|..||=+...
T Consensus 43 DL~~Ly-~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 43 DLACFF-RLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp CHHHHH-HHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred cHHHHH-HHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 567666 57788999877665 4677889987543 4678888888866543
No 38
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=28.41 E-value=22 Score=30.12 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCc-c--HHhHHHhhhhhhhc
Q 018419 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGL-T--LYHLKSHLQKYRLG 72 (356)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GL-T--~~hVKSHLQKYRl~ 72 (356)
+|+.-|.. |..+||.++.+- +.|.+.||+|.- | .+.++.|..||=+.
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 68887765 789999887654 567889998762 1 46788888887543
No 39
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=28.26 E-value=21 Score=29.63 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCc----hhHHhhhCCCCccHHhHHHhhhhhhhccc
Q 018419 25 ELHQRFVDAVNHLGGPDKATP----KSLMRVMGIPGLTLYHLKSHLQKYRLGKS 74 (356)
Q Consensus 25 ELH~rFV~AV~qLGG~dkAtP----K~IL~lM~v~GLT~~hVKSHLQKYRl~~~ 74 (356)
+|+.-|. +|..+||.++.+. +.|.+.|++|. -..++.|..||=+...
T Consensus 49 DL~~Ly~-~V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 49 NLFYLYM-LVQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLPYE 99 (123)
T ss_dssp CTTHHHH-HHTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HHHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHHHH
Confidence 6777775 5899999888775 56788999988 7788999888866544
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=27.68 E-value=1.1e+02 Score=25.12 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=38.4
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhC--CCCccHHhHHHhhhh
Q 018419 15 DAKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMG--IPGLTLYHLKSHLQK 68 (356)
Q Consensus 15 ~~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~--v~GLT~~hVKSHLQK 68 (356)
.++.|-.||+|=-+..+++|..+|. . .=+.|++.+. .+|=|--++|-+...
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdrWrn 61 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDKWKT 61 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHHHHH
Confidence 5788999999999999999999993 1 1356776552 378888888865443
No 41
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=26.49 E-value=1e+02 Score=23.82 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=34.5
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018419 19 RLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (356)
Q Consensus 19 RlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY 69 (356)
+-.||+|=..+++++|...|.. .=+.|-..| ||=|..+++.|...|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~---~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK---RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT---CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCC---cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 4579999999999999999831 123555555 678888888777665
No 42
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=25.66 E-value=1.1e+02 Score=28.30 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHH
Q 018419 115 LQIAQALQVQMEVQRKLHEQIEV---------QRHLQLRIEAQGKYLQSVLK 157 (356)
Q Consensus 115 ~qI~EALr~QmEVQrrLHEQLEV---------QRhLQlRIEAQGKYLQsiLE 157 (356)
-.|.+||.-=-|+||+|..+||. =.+|+.+||.-.||++....
T Consensus 71 keLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K 122 (222)
T 3ok8_A 71 QILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQ 122 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667776666889998888774 35899999999999986544
No 43
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=24.88 E-value=1.1e+02 Score=23.96 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=37.4
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhh
Q 018419 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 (356)
Q Consensus 18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl 71 (356)
.+-.||+|=...++++|..+|. .=..|-+.| ||=|-.+|+.|...+.-
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHh
Confidence 3568999999999999999993 134565655 78999999988776543
No 44
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.56 E-value=2e+02 Score=20.56 Aligned_cols=49 Identities=10% Similarity=0.171 Sum_probs=37.4
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhh
Q 018419 16 AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 71 (356)
Q Consensus 16 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl 71 (356)
.-.+-.||+|=..+++++|..+|- .=..|-++ +|=|-.+++.|.+.|-.
T Consensus 6 ~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~---~gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 6 SGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPI---IGRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHH---HSSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhcc---cCcCHHHHHHHHHHHhC
Confidence 345668999999999999999982 23555564 46888999999887743
No 45
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=21.95 E-value=1.6e+02 Score=23.64 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=35.1
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018419 16 AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (356)
Q Consensus 16 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY 69 (356)
.-.+-.||+|=-.+++++|...|. . .=+.|-..| ||=|..+++.|...|
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~g~-~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKYGP-K--RWSDIAKHL--KGRIGKQCRERWHNH 72 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHTCS-C--CHHHHHHHS--SSCCHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-C--CHHHHHHHh--cCCcHHHHHHHHHHh
Confidence 345678999999999999999983 1 123555554 577878887766654
No 46
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=20.65 E-value=2.2e+02 Score=21.88 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=35.4
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhh
Q 018419 18 PRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKY 69 (356)
Q Consensus 18 pRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKY 69 (356)
.+-.||+|=...++++|.++|.- =..|-+. +||=|-.+|+.|...+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~----W~~Ia~~--l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNR----WAEIAKL--LPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSC----HHHHHTT--CTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCC----HHHHHHH--cCCCCHHHHHHHHHHH
Confidence 45689999999999999999931 2345444 5899999999887643
No 47
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=20.38 E-value=83 Score=27.31 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018419 114 DLQIAQALQVQMEVQRKLHEQIEVQRHLQLRIEAQ 148 (356)
Q Consensus 114 ~~qI~EALr~QmEVQrrLHEQLEVQRhLQlRIEAQ 148 (356)
.|.+.|||...-.+|||+ .+|+-||..-
T Consensus 3 ~MKLAEAL~lRadl~kri-------~qL~~ri~~n 30 (154)
T 3kdq_A 3 AMYLAEALAQRVEAQRRY-------SELNQLLLDV 30 (154)
T ss_dssp CCBHHHHHHHHHHHHHHH-------HHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHH-------HHHHHHHHhc
Confidence 488999999999999999 4566666543
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=22.67 E-value=27 Score=27.23 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=37.9
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCCchhHHhhhCCCCccHHhHHHhhhhhhhc
Q 018419 16 AKPRLKWTPELHQRFVDAVNHLGGPDKATPKSLMRVMGIPGLTLYHLKSHLQKYRLG 72 (356)
Q Consensus 16 ~KpRlrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~v~GLT~~hVKSHLQKYRl~ 72 (356)
.-.+-.||+|=...|+++|..+|-- =..|-.. ++|=|-.+|+.|...|.-.
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~~----W~~IA~~--l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGRN----WSAIARM--VGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 4455689999999999999999831 2334444 4788999999888877543
Done!