Query 018420
Match_columns 356
No_of_seqs 140 out of 1483
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 08:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018420.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018420hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 8.6E-57 1.9E-61 367.5 26.4 340 1-345 87-427 (476)
2 PRK11776 ATP-dependent RNA hel 100.0 1.5E-55 3.2E-60 399.0 36.3 337 1-342 30-366 (460)
3 KOG0331 ATP-dependent RNA heli 100.0 3.6E-56 7.7E-61 386.6 30.2 345 1-349 117-472 (519)
4 PTZ00110 helicase; Provisional 100.0 2.8E-55 6.1E-60 400.7 34.5 345 1-349 156-508 (545)
5 PRK04837 ATP-dependent RNA hel 100.0 9.1E-55 2E-59 389.7 34.6 339 1-344 34-381 (423)
6 PRK11634 ATP-dependent RNA hel 100.0 1.7E-54 3.7E-59 398.7 35.9 340 1-344 32-371 (629)
7 COG0513 SrmB Superfamily II DN 100.0 2.1E-54 4.6E-59 391.1 34.6 340 1-342 55-398 (513)
8 PRK10590 ATP-dependent RNA hel 100.0 3.7E-54 8.1E-59 388.0 36.1 337 1-342 27-369 (456)
9 PRK01297 ATP-dependent RNA hel 100.0 9.3E-54 2E-58 388.1 36.2 341 1-345 113-463 (475)
10 PRK04537 ATP-dependent RNA hel 100.0 9.7E-54 2.1E-58 391.7 35.5 338 1-343 35-382 (572)
11 PLN00206 DEAD-box ATP-dependen 100.0 8E-54 1.7E-58 390.2 34.7 348 1-354 147-504 (518)
12 PRK11192 ATP-dependent RNA hel 100.0 4.1E-53 8.9E-58 380.9 36.8 336 1-341 27-368 (434)
13 PTZ00424 helicase 45; Provisio 100.0 1.4E-52 3E-57 375.1 35.8 343 1-348 54-397 (401)
14 KOG0328 Predicted ATP-dependen 100.0 2E-53 4.4E-58 333.8 25.8 342 1-347 53-395 (400)
15 KOG0345 ATP-dependent RNA heli 100.0 7.4E-52 1.6E-56 346.3 29.2 341 1-343 32-382 (567)
16 KOG0326 ATP-dependent RNA heli 100.0 6.7E-53 1.4E-57 336.4 20.4 348 1-354 111-458 (459)
17 KOG0342 ATP-dependent RNA heli 100.0 6.4E-52 1.4E-56 348.7 27.0 331 1-334 108-446 (543)
18 KOG0343 RNA Helicase [RNA proc 100.0 5.6E-51 1.2E-55 347.2 25.3 339 1-344 95-441 (758)
19 KOG0338 ATP-dependent RNA heli 100.0 1E-50 2.2E-55 342.6 22.8 331 1-336 207-544 (691)
20 KOG0335 ATP-dependent RNA heli 100.0 5.6E-50 1.2E-54 342.1 27.1 347 1-350 100-469 (482)
21 KOG0333 U5 snRNP-like RNA heli 100.0 1.2E-49 2.6E-54 337.1 28.6 345 1-349 271-649 (673)
22 KOG0336 ATP-dependent RNA heli 100.0 2.2E-49 4.7E-54 326.3 25.3 343 1-348 246-595 (629)
23 KOG0340 ATP-dependent RNA heli 100.0 9.2E-49 2E-53 316.8 25.1 344 1-348 33-384 (442)
24 KOG0348 ATP-dependent RNA heli 100.0 1.1E-48 2.3E-53 332.1 22.4 334 1-337 163-566 (708)
25 KOG0346 RNA helicase [RNA proc 100.0 2.7E-48 5.9E-53 322.3 23.7 325 1-327 45-413 (569)
26 TIGR03817 DECH_helic helicase/ 100.0 1.1E-47 2.3E-52 360.4 30.7 334 1-346 40-409 (742)
27 TIGR00614 recQ_fam ATP-depende 100.0 5E-47 1.1E-51 342.7 31.6 308 1-325 15-334 (470)
28 PLN03137 ATP-dependent DNA hel 100.0 3.8E-46 8.3E-51 348.9 31.1 309 1-324 464-787 (1195)
29 PRK11057 ATP-dependent DNA hel 100.0 9.6E-46 2.1E-50 342.6 31.1 307 1-325 29-344 (607)
30 TIGR01389 recQ ATP-dependent D 100.0 1.5E-45 3.2E-50 342.6 29.8 307 1-324 17-331 (591)
31 KOG4284 DEAD box protein [Tran 100.0 1.1E-45 2.3E-50 320.3 24.6 323 1-326 51-381 (980)
32 KOG0339 ATP-dependent RNA heli 100.0 1.1E-44 2.3E-49 306.0 28.1 344 1-349 249-599 (731)
33 KOG0332 ATP-dependent RNA heli 100.0 3.3E-45 7.2E-50 298.1 22.9 339 1-345 116-464 (477)
34 KOG0329 ATP-dependent RNA heli 100.0 1.2E-46 2.7E-51 291.6 13.5 319 1-355 68-386 (387)
35 KOG0350 DEAD-box ATP-dependent 100.0 1.2E-44 2.5E-49 305.2 23.1 334 1-336 163-552 (620)
36 KOG0341 DEAD-box protein abstr 100.0 4.9E-46 1.1E-50 304.7 13.8 342 1-346 196-550 (610)
37 PRK13767 ATP-dependent helicas 100.0 1.7E-43 3.7E-48 338.5 31.0 317 1-322 36-396 (876)
38 KOG0327 Translation initiation 100.0 4.3E-44 9.4E-49 293.5 22.5 342 1-348 52-393 (397)
39 COG1111 MPH1 ERCC4-like helica 100.0 1.3E-42 2.7E-47 294.9 27.6 306 12-324 29-481 (542)
40 PRK02362 ski2-like helicase; P 100.0 1.3E-42 2.7E-47 329.7 28.2 332 1-348 27-419 (737)
41 TIGR00580 mfd transcription-re 100.0 9.3E-42 2E-46 323.4 33.8 315 1-335 455-783 (926)
42 KOG0334 RNA helicase [RNA proc 100.0 6.2E-43 1.3E-47 319.6 24.7 343 1-348 391-743 (997)
43 COG0514 RecQ Superfamily II DN 100.0 4E-42 8.7E-47 304.7 26.0 309 2-325 22-338 (590)
44 KOG0347 RNA helicase [RNA proc 100.0 3.2E-43 6.9E-48 299.8 16.8 334 1-340 207-585 (731)
45 PRK10689 transcription-repair 100.0 3E-41 6.5E-46 326.5 32.7 314 1-335 604-932 (1147)
46 COG1201 Lhr Lhr-like helicases 100.0 1.3E-41 2.9E-46 312.1 27.0 317 1-323 26-361 (814)
47 PRK10917 ATP-dependent DNA hel 100.0 1.5E-40 3.2E-45 311.3 33.6 315 1-335 265-600 (681)
48 KOG0344 ATP-dependent RNA heli 100.0 2.8E-42 6.1E-47 297.2 20.2 346 1-348 162-518 (593)
49 TIGR00643 recG ATP-dependent D 100.0 2E-40 4.2E-45 308.6 32.3 317 1-334 239-576 (630)
50 PRK00254 ski2-like helicase; P 100.0 3.5E-41 7.5E-46 319.2 27.6 309 1-324 27-388 (720)
51 PRK09751 putative ATP-dependen 100.0 3.6E-40 7.8E-45 320.8 30.7 322 17-344 1-406 (1490)
52 PRK01172 ski2-like helicase; P 100.0 2.6E-40 5.6E-45 312.0 26.4 307 1-323 26-377 (674)
53 PHA02558 uvsW UvsW helicase; P 100.0 1.3E-39 2.9E-44 295.8 27.8 306 1-326 118-454 (501)
54 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.4E-39 7.4E-44 297.8 30.5 310 1-321 19-388 (844)
55 KOG0337 ATP-dependent RNA heli 100.0 2.8E-40 6E-45 273.4 18.7 327 1-331 47-375 (529)
56 PHA02653 RNA helicase NPH-II; 100.0 4.8E-39 1E-43 295.2 26.9 307 1-326 168-516 (675)
57 TIGR01587 cas3_core CRISPR-ass 100.0 3.1E-39 6.6E-44 284.4 22.9 298 14-323 1-335 (358)
58 PRK11664 ATP-dependent RNA hel 100.0 2.4E-37 5.2E-42 291.2 29.6 300 4-323 12-338 (812)
59 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.6E-37 3.6E-42 291.7 27.1 300 4-323 9-335 (819)
60 KOG0354 DEAD-box like helicase 100.0 1.3E-37 2.9E-42 279.3 25.3 314 2-323 67-528 (746)
61 TIGR00603 rad25 DNA repair hel 100.0 5.8E-37 1.2E-41 280.4 27.0 308 2-334 260-617 (732)
62 COG1204 Superfamily II helicas 100.0 1.7E-37 3.7E-42 288.7 23.9 310 2-321 36-405 (766)
63 TIGR03158 cas3_cyano CRISPR-as 100.0 4.4E-36 9.6E-41 261.3 29.2 292 2-309 2-357 (357)
64 PRK13766 Hef nuclease; Provisi 100.0 1.4E-35 3E-40 285.1 34.0 316 2-325 20-480 (773)
65 COG1205 Distinct helicase fami 100.0 4E-36 8.6E-41 283.4 27.0 315 2-322 75-420 (851)
66 KOG0352 ATP-dependent DNA heli 100.0 3.6E-37 7.9E-42 255.6 16.1 316 1-334 24-371 (641)
67 PRK09401 reverse gyrase; Revie 100.0 1.6E-35 3.4E-40 287.5 28.0 292 1-310 84-430 (1176)
68 COG1061 SSL2 DNA or RNA helica 100.0 2.9E-35 6.3E-40 262.2 24.4 288 1-311 40-376 (442)
69 PRK12898 secA preprotein trans 100.0 1.2E-34 2.6E-39 262.2 27.3 309 1-323 107-585 (656)
70 KOG0952 DNA/RNA helicase MER3/ 100.0 3.4E-35 7.4E-40 267.6 23.0 324 1-333 114-500 (1230)
71 PRK14701 reverse gyrase; Provi 100.0 1.4E-34 3.1E-39 286.6 29.0 303 1-318 83-450 (1638)
72 COG1202 Superfamily II helicas 100.0 9.7E-35 2.1E-39 249.6 22.4 312 2-324 221-553 (830)
73 KOG0351 ATP-dependent DNA heli 100.0 4.8E-35 1E-39 274.3 22.0 314 2-328 269-596 (941)
74 PRK09200 preprotein translocas 100.0 9.7E-34 2.1E-38 261.7 27.3 309 2-323 83-540 (790)
75 TIGR03714 secA2 accessory Sec 100.0 1.5E-33 3.2E-38 258.2 28.1 312 2-324 73-537 (762)
76 TIGR00963 secA preprotein tran 100.0 1.3E-33 2.8E-38 256.9 26.8 309 2-324 61-517 (745)
77 COG1200 RecG RecG-like helicas 100.0 1.6E-32 3.5E-37 243.2 28.2 316 2-336 267-603 (677)
78 TIGR00595 priA primosomal prot 100.0 4.3E-33 9.4E-38 251.1 22.4 293 16-326 1-383 (505)
79 PRK05580 primosome assembly pr 100.0 2.3E-32 5.1E-37 255.1 24.8 306 2-325 149-550 (679)
80 PRK04914 ATP-dependent helicas 100.0 1.3E-31 2.7E-36 253.7 29.7 330 2-339 157-617 (956)
81 TIGR01054 rgy reverse gyrase. 100.0 1.1E-31 2.5E-36 261.1 28.2 278 1-296 82-409 (1171)
82 PRK11131 ATP-dependent RNA hel 100.0 8.7E-31 1.9E-35 251.5 29.0 294 4-323 81-410 (1294)
83 PRK09694 helicase Cas3; Provis 100.0 7.8E-31 1.7E-35 246.8 26.3 297 11-313 300-664 (878)
84 COG1197 Mfd Transcription-repa 100.0 1.8E-30 3.9E-35 242.7 28.0 313 2-336 599-927 (1139)
85 KOG0353 ATP-dependent DNA heli 100.0 4.8E-31 1E-35 216.7 18.5 310 1-324 98-467 (695)
86 COG4098 comFA Superfamily II D 100.0 2.6E-30 5.6E-35 209.4 22.2 302 6-335 110-426 (441)
87 PRK11448 hsdR type I restricti 100.0 3.1E-30 6.7E-35 249.4 26.7 314 2-324 418-815 (1123)
88 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.9E-30 1.3E-34 246.6 25.7 299 4-324 74-404 (1283)
89 KOG0349 Putative DEAD-box RNA 100.0 1.9E-29 4.1E-34 210.4 19.7 306 41-348 284-670 (725)
90 KOG0951 RNA helicase BRR2, DEA 100.0 2.4E-29 5.1E-34 232.9 21.5 313 2-322 314-700 (1674)
91 PRK13104 secA preprotein trans 100.0 3.5E-28 7.6E-33 224.7 27.3 300 15-326 98-589 (896)
92 KOG0947 Cytoplasmic exosomal R 100.0 1.1E-28 2.5E-33 223.1 21.0 299 1-318 301-715 (1248)
93 PRK12904 preprotein translocas 100.0 8.3E-28 1.8E-32 222.0 26.3 300 15-326 97-575 (830)
94 PLN03142 Probable chromatin-re 100.0 1.6E-27 3.5E-32 226.7 26.7 326 2-337 174-613 (1033)
95 PRK12906 secA preprotein trans 100.0 1.3E-27 2.8E-32 219.8 24.1 298 16-325 97-554 (796)
96 COG4581 Superfamily II RNA hel 100.0 4.6E-28 9.9E-33 226.5 21.0 307 1-322 123-535 (1041)
97 COG1203 CRISPR-associated heli 100.0 1.3E-27 2.9E-32 225.4 20.8 319 2-324 200-550 (733)
98 KOG0948 Nuclear exosomal RNA h 100.0 2.7E-28 5.9E-33 215.7 14.8 311 1-329 133-544 (1041)
99 TIGR00348 hsdR type I site-spe 100.0 3.5E-26 7.6E-31 213.7 28.1 302 13-331 264-655 (667)
100 cd00268 DEADc DEAD-box helicas 100.0 3.3E-27 7.2E-32 191.4 17.0 176 1-179 25-202 (203)
101 COG1643 HrpA HrpA-like helicas 99.9 5.5E-26 1.2E-30 211.2 23.9 302 4-323 57-386 (845)
102 PRK13107 preprotein translocas 99.9 1.4E-25 3E-30 207.0 24.2 301 14-326 97-593 (908)
103 PF00270 DEAD: DEAD/DEAH box h 99.9 1.1E-26 2.3E-31 183.0 13.6 163 1-166 3-167 (169)
104 PRK12899 secA preprotein trans 99.9 4E-25 8.6E-30 204.4 24.4 125 1-132 96-228 (970)
105 COG1198 PriA Primosomal protei 99.9 1.6E-25 3.4E-30 205.2 20.9 308 2-326 203-605 (730)
106 KOG0922 DEAH-box RNA helicase 99.9 9.2E-25 2E-29 192.4 22.3 302 4-323 58-389 (674)
107 COG4096 HsdR Type I site-speci 99.9 4.9E-25 1.1E-29 198.7 18.0 305 2-327 170-548 (875)
108 KOG0385 Chromatin remodeling c 99.9 2.1E-23 4.5E-28 185.6 23.2 324 2-337 172-613 (971)
109 COG1110 Reverse gyrase [DNA re 99.9 8.3E-23 1.8E-27 187.4 26.5 275 2-295 87-416 (1187)
110 KOG0950 DNA polymerase theta/e 99.9 2.8E-23 6.1E-28 189.3 20.8 331 2-349 228-632 (1008)
111 KOG0920 ATP-dependent RNA heli 99.9 4.3E-23 9.2E-28 191.4 21.3 314 2-327 178-547 (924)
112 KOG0949 Predicted helicase, DE 99.9 5.8E-23 1.3E-27 186.9 19.4 157 1-164 515-674 (1330)
113 TIGR01407 dinG_rel DnaQ family 99.9 1.5E-21 3.2E-26 188.3 30.3 122 216-338 673-829 (850)
114 KOG0923 mRNA splicing factor A 99.9 1.9E-22 4.1E-27 176.9 21.6 304 4-324 272-606 (902)
115 KOG0924 mRNA splicing factor A 99.9 1.4E-22 3E-27 178.2 17.0 300 3-323 362-696 (1042)
116 TIGR00631 uvrb excinuclease AB 99.9 1.9E-20 4E-25 173.5 31.0 108 216-324 441-553 (655)
117 KOG0387 Transcription-coupled 99.9 2.1E-21 4.6E-26 173.6 23.0 307 2-320 210-652 (923)
118 PRK12326 preprotein translocas 99.9 1.8E-21 3.9E-26 176.0 22.4 298 15-325 94-548 (764)
119 PRK12900 secA preprotein trans 99.9 8.8E-22 1.9E-26 183.0 20.5 128 195-324 574-711 (1025)
120 PRK13103 secA preprotein trans 99.9 6.3E-21 1.4E-25 176.6 22.8 299 14-325 97-592 (913)
121 KOG1123 RNA polymerase II tran 99.9 5.9E-22 1.3E-26 168.7 13.8 307 2-335 307-664 (776)
122 PRK07246 bifunctional ATP-depe 99.9 7.7E-20 1.7E-24 174.2 29.3 121 216-339 646-799 (820)
123 COG0556 UvrB Helicase subunit 99.9 2.2E-20 4.8E-25 160.6 22.8 119 204-323 432-556 (663)
124 TIGR03117 cas_csf4 CRISPR-asso 99.9 2.6E-19 5.7E-24 163.3 30.7 124 209-335 463-627 (636)
125 KOG0926 DEAH-box RNA helicase 99.9 5.8E-21 1.3E-25 170.9 17.4 308 3-323 262-703 (1172)
126 KOG0390 DNA repair protein, SN 99.9 1.4E-19 3E-24 165.6 25.7 297 14-320 265-701 (776)
127 PRK12903 secA preprotein trans 99.9 1.7E-19 3.7E-24 165.6 23.2 297 15-324 94-539 (925)
128 COG4889 Predicted helicase [Ge 99.9 3.2E-21 7E-26 174.1 11.4 303 2-312 166-573 (1518)
129 smart00487 DEXDc DEAD-like hel 99.9 1.1E-19 2.3E-24 147.2 18.8 180 1-183 12-192 (201)
130 KOG0384 Chromodomain-helicase 99.8 2.7E-19 6E-24 166.9 22.4 315 9-338 386-826 (1373)
131 PRK08074 bifunctional ATP-depe 99.8 4E-18 8.6E-23 165.4 30.7 123 216-338 751-908 (928)
132 KOG1000 Chromatin remodeling p 99.8 4.4E-19 9.5E-24 151.1 20.7 321 2-337 203-617 (689)
133 CHL00122 secA preprotein trans 99.8 1.1E-18 2.5E-23 161.1 24.1 261 12-284 89-491 (870)
134 KOG0389 SNF2 family DNA-depend 99.8 2.1E-19 4.6E-24 160.8 18.6 128 207-334 765-898 (941)
135 KOG4150 Predicted ATP-dependen 99.8 9.8E-21 2.1E-25 163.8 9.8 348 1-351 290-668 (1034)
136 KOG0392 SNF2 family DNA-depend 99.8 4.1E-19 8.9E-24 165.5 20.3 313 2-325 980-1455(1549)
137 cd00079 HELICc Helicase superf 99.8 6.9E-19 1.5E-23 132.3 15.0 118 203-320 12-131 (131)
138 cd00046 DEXDc DEAD-like helica 99.8 2E-18 4.2E-23 131.8 15.3 144 13-161 1-144 (144)
139 KOG0953 Mitochondrial RNA heli 99.8 1.4E-18 3E-23 150.1 15.8 283 12-343 191-491 (700)
140 PRK12902 secA preprotein trans 99.8 6.4E-17 1.4E-21 149.5 24.5 260 13-284 99-506 (939)
141 PRK05298 excinuclease ABC subu 99.8 7.3E-18 1.6E-22 157.5 17.7 132 216-348 445-589 (652)
142 TIGR02562 cas3_yersinia CRISPR 99.8 1.9E-17 4.1E-22 155.2 19.2 305 1-313 412-881 (1110)
143 PF04851 ResIII: Type III rest 99.8 1.4E-18 3E-23 138.8 10.0 149 2-162 8-183 (184)
144 PF00271 Helicase_C: Helicase 99.8 1.1E-18 2.3E-23 118.1 7.9 78 235-312 1-78 (78)
145 PRK11747 dinG ATP-dependent DN 99.8 1.5E-15 3.3E-20 143.1 30.8 105 217-324 534-674 (697)
146 COG0610 Type I site-specific r 99.7 3.7E-16 8.1E-21 150.9 23.5 288 12-311 273-636 (962)
147 KOG0925 mRNA splicing factor A 99.7 7.8E-17 1.7E-21 137.4 16.3 294 6-323 56-386 (699)
148 COG1199 DinG Rad3-related DNA 99.7 5.6E-16 1.2E-20 147.1 23.1 113 207-323 470-616 (654)
149 PRK14873 primosome assembly pr 99.7 3.6E-17 7.8E-22 151.4 14.3 282 16-322 164-537 (665)
150 KOG0951 RNA helicase BRR2, DEA 99.7 4.3E-16 9.4E-21 146.0 21.2 306 1-327 1147-1497(1674)
151 TIGR00604 rad3 DNA repair heli 99.7 3.3E-15 7.2E-20 142.0 25.9 107 217-324 522-674 (705)
152 KOG0386 Chromatin remodeling c 99.7 3.6E-17 7.7E-22 150.2 11.8 302 12-322 413-834 (1157)
153 KOG1002 Nucleotide excision re 99.7 6.9E-16 1.5E-20 131.9 18.6 120 216-335 637-760 (791)
154 KOG4439 RNA polymerase II tran 99.7 9.9E-16 2.1E-20 136.0 19.7 119 216-334 745-868 (901)
155 PRK12901 secA preprotein trans 99.7 2.3E-15 5E-20 140.8 20.1 128 196-326 605-743 (1112)
156 KOG0388 SNF2 family DNA-depend 99.7 1.1E-15 2.5E-20 135.8 16.9 103 216-318 1043-1146(1185)
157 PF02399 Herpes_ori_bp: Origin 99.7 1E-14 2.2E-19 133.8 20.7 291 13-324 50-388 (824)
158 KOG0391 SNF2 family DNA-depend 99.7 8.2E-15 1.8E-19 136.5 20.0 108 216-323 1275-1386(1958)
159 smart00490 HELICc helicase sup 99.7 5.3E-16 1.2E-20 106.2 8.7 81 232-312 2-82 (82)
160 PF07652 Flavi_DEAD: Flaviviru 99.5 8.4E-14 1.8E-18 101.3 9.5 137 11-165 3-140 (148)
161 KOG1015 Transcription regulato 99.5 2.9E-12 6.4E-17 117.8 18.2 105 216-320 1141-1271(1567)
162 COG0653 SecA Preprotein transl 99.4 1.9E-12 4E-17 119.9 14.3 298 13-323 94-544 (822)
163 PF00176 SNF2_N: SNF2 family N 99.4 1.3E-13 2.8E-18 118.9 6.2 146 12-164 25-175 (299)
164 COG0553 HepA Superfamily II DN 99.4 6E-12 1.3E-16 124.4 18.7 102 219-320 713-816 (866)
165 PF06862 DUF1253: Protein of u 99.4 8.3E-10 1.8E-14 96.7 25.6 226 96-323 132-414 (442)
166 PRK15483 type III restriction- 99.3 5.6E-10 1.2E-14 106.1 21.2 74 267-340 501-583 (986)
167 KOG1016 Predicted DNA helicase 99.1 1.8E-08 3.9E-13 91.7 21.7 106 217-322 719-845 (1387)
168 smart00488 DEXDc2 DEAD-like he 99.1 3.1E-10 6.8E-15 96.1 8.9 62 5-66 20-84 (289)
169 smart00489 DEXDc3 DEAD-like he 99.1 3.1E-10 6.8E-15 96.1 8.9 62 5-66 20-84 (289)
170 COG3587 Restriction endonuclea 99.0 6.1E-08 1.3E-12 89.4 20.6 74 266-339 482-567 (985)
171 KOG0921 Dosage compensation co 99.0 6.6E-10 1.4E-14 102.2 8.0 308 5-322 386-772 (1282)
172 KOG2340 Uncharacterized conser 99.0 3.8E-09 8.1E-14 92.1 10.9 321 1-323 220-667 (698)
173 PF13307 Helicase_C_2: Helicas 98.9 5.6E-09 1.2E-13 81.2 7.7 112 210-324 3-150 (167)
174 PF07517 SecA_DEAD: SecA DEAD- 98.9 2.2E-08 4.8E-13 82.6 11.3 111 15-132 93-210 (266)
175 KOG1132 Helicase of the DEAD s 98.8 1.7E-06 3.8E-11 80.4 22.7 105 218-323 562-721 (945)
176 KOG0952 DNA/RNA helicase MER3/ 98.8 1.6E-09 3.5E-14 101.4 3.0 216 12-236 943-1172(1230)
177 KOG1001 Helicase-like transcri 98.8 3.3E-08 7E-13 92.0 10.9 101 219-319 541-643 (674)
178 KOG1131 RNA polymerase II tran 98.8 1.3E-06 2.7E-11 76.6 18.2 106 217-322 530-679 (755)
179 PF13086 AAA_11: AAA domain; P 98.7 4.7E-08 1E-12 81.0 7.5 64 2-65 6-75 (236)
180 TIGR00596 rad1 DNA repair prot 98.7 1E-06 2.2E-11 84.2 16.4 67 96-163 8-74 (814)
181 PF02562 PhoH: PhoH-like prote 98.6 5.2E-08 1.1E-12 77.1 5.2 133 2-160 9-155 (205)
182 COG3421 Uncharacterized protei 98.5 4.5E-07 9.7E-12 80.7 9.3 144 17-163 2-167 (812)
183 PF13604 AAA_30: AAA domain; P 98.5 1.9E-07 4.2E-12 74.6 6.5 118 2-160 6-130 (196)
184 PF13245 AAA_19: Part of AAA d 98.5 4.9E-07 1.1E-11 59.7 5.7 58 5-63 2-62 (76)
185 PF09848 DUF2075: Uncharacteri 98.4 1.5E-06 3.2E-11 76.4 9.2 95 14-133 3-97 (352)
186 smart00492 HELICc3 helicase su 98.4 4.2E-06 9E-11 62.7 9.6 94 230-323 4-137 (141)
187 KOG1802 RNA helicase nonsense 98.4 1.7E-06 3.6E-11 78.1 8.6 72 2-80 415-486 (935)
188 TIGR01447 recD exodeoxyribonuc 98.4 2E-06 4.4E-11 79.8 9.2 139 1-160 149-295 (586)
189 KOG1803 DNA helicase [Replicat 98.4 8.3E-07 1.8E-11 79.3 6.3 59 2-63 190-249 (649)
190 PRK10875 recD exonuclease V su 98.3 1.4E-06 3E-11 81.1 7.9 138 1-160 156-301 (615)
191 PF13872 AAA_34: P-loop contai 98.3 4.2E-06 9.1E-11 69.5 9.6 142 13-164 63-223 (303)
192 smart00491 HELICc2 helicase su 98.3 4.1E-06 8.8E-11 62.9 8.6 95 229-323 3-138 (142)
193 PRK10536 hypothetical protein; 98.3 6.1E-06 1.3E-10 67.4 8.8 52 2-54 64-115 (262)
194 KOG1513 Nuclear helicase MOP-3 98.2 2.3E-06 5E-11 78.6 6.7 141 15-160 292-453 (1300)
195 TIGR01448 recD_rel helicase, p 98.2 5.1E-06 1.1E-10 79.5 8.7 120 2-160 328-452 (720)
196 PF12340 DUF3638: Protein of u 98.1 2.2E-05 4.8E-10 62.9 8.3 127 2-133 28-186 (229)
197 PF00580 UvrD-helicase: UvrD/R 97.9 9.2E-06 2E-10 70.5 3.9 118 2-129 5-125 (315)
198 PF13401 AAA_22: AAA domain; P 97.9 2.1E-05 4.6E-10 58.6 5.1 120 11-161 3-125 (131)
199 PRK04296 thymidine kinase; Pro 97.8 2.5E-05 5.4E-10 62.2 4.9 36 13-51 3-38 (190)
200 TIGR02768 TraA_Ti Ti-type conj 97.8 7.8E-05 1.7E-09 71.8 8.9 116 2-158 357-474 (744)
201 PF13871 Helicase_C_4: Helicas 97.8 6E-05 1.3E-09 62.5 7.0 65 258-322 52-125 (278)
202 PRK06526 transposase; Provisio 97.8 3.8E-05 8.2E-10 63.8 5.8 47 118-164 158-204 (254)
203 PRK12723 flagellar biosynthesi 97.8 0.0002 4.3E-09 63.0 9.7 121 13-163 175-299 (388)
204 KOG1133 Helicase of the DEAD s 97.8 0.00032 7E-09 64.2 11.0 109 211-323 624-779 (821)
205 PRK14974 cell division protein 97.8 0.0003 6.4E-09 60.8 10.4 131 13-172 141-275 (336)
206 KOG0298 DEAD box-containing he 97.8 8.8E-05 1.9E-09 72.1 7.7 147 12-167 374-556 (1394)
207 COG1419 FlhF Flagellar GTP-bin 97.7 0.00044 9.6E-09 60.1 11.0 137 11-176 202-339 (407)
208 KOG1805 DNA replication helica 97.7 0.00012 2.6E-09 69.3 7.3 121 2-134 674-811 (1100)
209 KOG0383 Predicted helicase [Ge 97.7 5.6E-06 1.2E-10 76.7 -1.5 64 216-280 630-696 (696)
210 PF00448 SRP54: SRP54-type pro 97.7 0.00029 6.3E-09 56.2 8.4 124 14-166 3-130 (196)
211 PRK13889 conjugal transfer rel 97.7 0.00017 3.8E-09 70.6 8.4 118 2-160 351-470 (988)
212 smart00382 AAA ATPases associa 97.7 0.00024 5.2E-09 53.5 7.6 41 12-55 2-42 (148)
213 cd00009 AAA The AAA+ (ATPases 97.6 0.00038 8.2E-09 52.8 8.7 25 12-37 19-43 (151)
214 COG1875 NYN ribonuclease and A 97.6 8.4E-05 1.8E-09 63.0 4.4 137 2-157 233-384 (436)
215 PRK13826 Dtr system oriT relax 97.6 0.00035 7.6E-09 69.0 8.9 118 2-160 386-505 (1102)
216 PRK14722 flhF flagellar biosyn 97.5 0.00036 7.8E-09 60.9 8.0 125 11-164 136-260 (374)
217 PRK08181 transposase; Validate 97.5 0.00043 9.4E-09 57.9 7.8 110 9-164 103-212 (269)
218 PRK11889 flhF flagellar biosyn 97.5 0.0022 4.7E-08 56.1 11.5 129 13-172 242-374 (436)
219 KOG0989 Replication factor C, 97.5 0.00022 4.8E-09 59.1 5.2 49 113-163 123-171 (346)
220 TIGR00376 DNA helicase, putati 97.5 0.00016 3.4E-09 68.4 4.9 61 2-65 162-223 (637)
221 PRK14956 DNA polymerase III su 97.4 0.0007 1.5E-08 60.9 8.3 22 14-35 42-63 (484)
222 KOG0701 dsRNA-specific nucleas 97.4 0.00017 3.7E-09 72.8 4.4 93 219-311 294-398 (1606)
223 PF00308 Bac_DnaA: Bacterial d 97.3 0.00085 1.8E-08 54.7 6.9 48 118-165 96-144 (219)
224 PF14617 CMS1: U3-containing 9 97.3 0.00093 2E-08 54.9 7.1 88 41-130 124-212 (252)
225 PRK05703 flhF flagellar biosyn 97.3 0.0043 9.4E-08 55.8 11.8 129 12-172 221-354 (424)
226 PRK05642 DNA replication initi 97.3 0.00092 2E-08 55.1 6.7 44 119-162 97-140 (234)
227 PF05127 Helicase_RecD: Helica 97.3 0.00066 1.4E-08 52.6 5.4 124 16-162 1-124 (177)
228 COG2256 MGS1 ATPase related to 97.2 0.0017 3.7E-08 56.1 8.2 18 13-30 49-66 (436)
229 PRK08727 hypothetical protein; 97.2 0.001 2.2E-08 54.8 6.7 48 118-165 92-140 (233)
230 TIGR02760 TraI_TIGR conjugativ 97.2 0.01 2.2E-07 63.4 14.9 130 2-160 434-566 (1960)
231 PRK10919 ATP-dependent DNA hel 97.2 0.00032 6.9E-09 67.1 3.6 77 2-80 7-86 (672)
232 PLN03025 replication factor C 97.1 0.0037 8E-08 54.3 9.5 38 119-158 99-136 (319)
233 PRK06731 flhF flagellar biosyn 97.1 0.0087 1.9E-07 50.2 11.0 129 13-172 76-208 (270)
234 PRK08084 DNA replication initi 97.1 0.0016 3.5E-08 53.8 6.6 43 120-162 98-142 (235)
235 PRK06893 DNA replication initi 97.1 0.0015 3.3E-08 53.7 6.5 46 118-163 90-136 (229)
236 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.0017 3.7E-08 53.4 6.7 20 12-31 38-57 (226)
237 PRK00149 dnaA chromosomal repl 97.1 0.0017 3.7E-08 59.2 7.3 47 13-61 149-195 (450)
238 PRK14087 dnaA chromosomal repl 97.1 0.0012 2.5E-08 59.9 6.1 109 13-163 142-251 (450)
239 PRK14964 DNA polymerase III su 97.1 0.0036 7.8E-08 57.0 8.9 21 13-33 36-56 (491)
240 PRK07764 DNA polymerase III su 97.0 0.0037 8.1E-08 60.7 9.5 39 118-158 119-157 (824)
241 PF13177 DNA_pol3_delta2: DNA 97.0 0.0033 7.3E-08 48.5 7.4 44 118-163 101-144 (162)
242 cd01120 RecA-like_NTPases RecA 97.0 0.005 1.1E-07 47.5 8.3 39 15-56 2-40 (165)
243 PRK12402 replication factor C 97.0 0.0037 8.1E-08 54.8 8.3 40 118-159 124-163 (337)
244 TIGR00362 DnaA chromosomal rep 97.0 0.0025 5.4E-08 57.4 7.3 38 13-51 137-174 (405)
245 PF13173 AAA_14: AAA domain 97.0 0.012 2.5E-07 43.6 9.7 38 119-160 61-98 (128)
246 PRK07952 DNA replication prote 97.0 0.0038 8.2E-08 51.5 7.7 45 118-163 161-207 (244)
247 PRK07003 DNA polymerase III su 97.0 0.0051 1.1E-07 58.3 9.2 40 118-159 118-157 (830)
248 PRK14088 dnaA chromosomal repl 97.0 0.0039 8.6E-08 56.5 8.3 38 13-51 131-168 (440)
249 PRK14958 DNA polymerase III su 96.9 0.0042 9E-08 57.3 8.5 39 118-158 118-156 (509)
250 PRK00771 signal recognition pa 96.9 0.017 3.7E-07 52.0 12.1 51 121-171 177-227 (437)
251 KOG2028 ATPase related to the 96.9 0.0053 1.1E-07 52.5 8.3 48 13-63 163-210 (554)
252 PRK14960 DNA polymerase III su 96.9 0.007 1.5E-07 56.6 9.8 39 118-158 117-155 (702)
253 PRK12323 DNA polymerase III su 96.9 0.0063 1.4E-07 56.8 9.4 41 118-160 123-163 (700)
254 PRK09183 transposase/IS protei 96.9 0.0036 7.9E-08 52.4 7.3 46 9-58 99-144 (259)
255 COG3972 Superfamily I DNA and 96.9 0.0073 1.6E-07 53.6 9.2 121 11-133 176-309 (660)
256 PRK14949 DNA polymerase III su 96.9 0.0062 1.3E-07 58.8 9.3 38 118-157 118-155 (944)
257 PF05970 PIF1: PIF1-like helic 96.9 0.0011 2.3E-08 58.7 3.9 52 2-56 6-63 (364)
258 TIGR01075 uvrD DNA helicase II 96.8 0.001 2.2E-08 64.5 3.7 77 2-80 9-87 (715)
259 PF05496 RuvB_N: Holliday junc 96.8 0.0025 5.4E-08 51.1 5.2 17 13-29 51-67 (233)
260 cd01124 KaiC KaiC is a circadi 96.8 0.0041 8.8E-08 49.4 6.6 48 15-66 2-49 (187)
261 PRK14712 conjugal transfer nic 96.8 0.0046 9.9E-08 63.6 8.3 57 2-59 840-900 (1623)
262 TIGR01074 rep ATP-dependent DN 96.8 0.0012 2.5E-08 63.6 3.9 77 2-80 6-85 (664)
263 PRK12377 putative replication 96.8 0.0044 9.5E-08 51.3 6.7 45 13-61 102-146 (248)
264 PRK11773 uvrD DNA-dependent he 96.8 0.0013 2.7E-08 63.8 4.1 77 2-80 14-92 (721)
265 PRK14952 DNA polymerase III su 96.8 0.007 1.5E-07 56.5 8.6 39 118-158 117-155 (584)
266 PRK06921 hypothetical protein; 96.8 0.0048 1E-07 51.9 6.9 44 12-58 117-160 (266)
267 PRK14086 dnaA chromosomal repl 96.8 0.0052 1.1E-07 57.1 7.6 47 118-164 376-423 (617)
268 PRK12422 chromosomal replicati 96.8 0.0079 1.7E-07 54.5 8.6 49 118-166 201-250 (445)
269 PRK14951 DNA polymerase III su 96.7 0.01 2.2E-07 55.7 9.5 21 14-34 40-60 (618)
270 PF00004 AAA: ATPase family as 96.7 0.014 3E-07 43.2 8.7 15 15-29 1-15 (132)
271 PRK11054 helD DNA helicase IV; 96.7 0.0017 3.6E-08 62.0 4.0 67 12-79 209-276 (684)
272 TIGR01425 SRP54_euk signal rec 96.7 0.036 7.9E-07 49.6 12.1 35 14-51 102-136 (429)
273 PRK13709 conjugal transfer nic 96.7 0.0071 1.5E-07 63.1 8.5 56 2-59 972-1032(1747)
274 PRK14723 flhF flagellar biosyn 96.6 0.013 2.7E-07 56.1 9.4 132 12-172 185-317 (767)
275 TIGR00064 ftsY signal recognit 96.6 0.028 6.1E-07 47.4 10.6 47 118-164 153-205 (272)
276 PRK14962 DNA polymerase III su 96.6 0.0084 1.8E-07 54.7 7.7 20 13-32 37-56 (472)
277 PRK05707 DNA polymerase III su 96.6 0.011 2.5E-07 51.2 8.2 35 1-35 7-45 (328)
278 PRK00411 cdc6 cell division co 96.6 0.0084 1.8E-07 53.9 7.7 37 13-50 56-92 (394)
279 PRK14963 DNA polymerase III su 96.6 0.0095 2.1E-07 54.8 8.0 19 14-32 38-56 (504)
280 PRK14961 DNA polymerase III su 96.6 0.012 2.5E-07 52.2 8.4 20 14-33 40-59 (363)
281 PRK12726 flagellar biosynthesi 96.6 0.012 2.6E-07 51.4 8.1 121 11-162 205-328 (407)
282 TIGR02785 addA_Gpos recombinat 96.6 0.0048 1E-07 63.3 6.6 119 2-130 6-126 (1232)
283 PRK06835 DNA replication prote 96.5 0.0084 1.8E-07 51.9 7.0 44 12-59 183-226 (329)
284 TIGR02881 spore_V_K stage V sp 96.5 0.0051 1.1E-07 51.8 5.5 18 13-30 43-60 (261)
285 PRK07994 DNA polymerase III su 96.5 0.012 2.7E-07 55.3 8.5 38 118-157 118-155 (647)
286 PRK08903 DnaA regulatory inact 96.5 0.011 2.3E-07 48.7 7.2 18 12-29 42-59 (227)
287 PRK07471 DNA polymerase III su 96.5 0.013 2.7E-07 51.7 7.9 43 117-161 139-181 (365)
288 PTZ00112 origin recognition co 96.5 0.039 8.5E-07 53.3 11.4 16 15-30 784-799 (1164)
289 COG0593 DnaA ATPase involved i 96.5 0.0061 1.3E-07 53.7 5.8 47 119-165 175-222 (408)
290 cd00984 DnaB_C DnaB helicase C 96.5 0.012 2.5E-07 49.0 7.4 40 10-51 11-50 (242)
291 PRK09111 DNA polymerase III su 96.5 0.014 3E-07 54.8 8.5 40 117-158 130-169 (598)
292 KOG0739 AAA+-type ATPase [Post 96.5 0.051 1.1E-06 45.4 10.6 55 6-67 155-214 (439)
293 PRK12727 flagellar biosynthesi 96.5 0.023 5E-07 51.9 9.4 26 10-35 348-373 (559)
294 PRK14965 DNA polymerase III su 96.5 0.022 4.8E-07 53.6 9.7 39 118-158 118-156 (576)
295 PRK14721 flhF flagellar biosyn 96.5 0.034 7.5E-07 49.7 10.4 132 11-172 190-323 (420)
296 PRK06645 DNA polymerase III su 96.4 0.019 4E-07 52.8 8.9 22 13-34 44-65 (507)
297 PRK00440 rfc replication facto 96.4 0.035 7.5E-07 48.3 10.4 38 119-158 102-139 (319)
298 PRK08691 DNA polymerase III su 96.4 0.014 3E-07 55.1 8.1 39 118-158 118-156 (709)
299 PRK14955 DNA polymerase III su 96.4 0.022 4.7E-07 51.1 9.1 21 13-33 39-59 (397)
300 PHA02544 44 clamp loader, smal 96.4 0.022 4.7E-07 49.5 8.9 39 119-158 100-138 (316)
301 cd01122 GP4d_helicase GP4d_hel 96.4 0.03 6.6E-07 47.4 9.6 53 11-66 29-81 (271)
302 PRK14873 primosome assembly pr 96.4 0.06 1.3E-06 51.3 12.2 128 203-333 172-311 (665)
303 PRK14957 DNA polymerase III su 96.4 0.015 3.3E-07 53.7 8.0 39 118-158 118-156 (546)
304 PF03354 Terminase_1: Phage Te 96.4 0.014 3E-07 53.7 7.7 146 1-157 2-159 (477)
305 COG2909 MalT ATP-dependent tra 96.3 0.043 9.3E-07 52.3 10.5 42 120-162 130-171 (894)
306 PRK14959 DNA polymerase III su 96.3 0.033 7.2E-07 52.2 9.7 24 13-36 39-62 (624)
307 PRK14954 DNA polymerase III su 96.3 0.02 4.3E-07 54.0 8.3 22 13-34 39-60 (620)
308 PRK10917 ATP-dependent DNA hel 96.3 0.02 4.3E-07 55.2 8.6 78 216-293 309-391 (681)
309 PRK08451 DNA polymerase III su 96.3 0.02 4.4E-07 52.8 8.1 39 118-158 116-154 (535)
310 PRK05580 primosome assembly pr 96.3 0.054 1.2E-06 52.1 11.4 78 216-294 189-267 (679)
311 COG0470 HolB ATPase involved i 96.3 0.019 4.2E-07 50.0 7.9 40 118-159 108-147 (325)
312 PRK14969 DNA polymerase III su 96.3 0.032 7E-07 51.8 9.5 39 118-158 118-156 (527)
313 TIGR00678 holB DNA polymerase 96.3 0.011 2.5E-07 46.9 5.9 21 13-33 15-35 (188)
314 PF05621 TniB: Bacterial TniB 96.3 0.017 3.6E-07 48.7 6.9 54 13-66 62-119 (302)
315 PRK05563 DNA polymerase III su 96.2 0.034 7.4E-07 52.1 9.6 21 13-33 39-59 (559)
316 PF06745 KaiC: KaiC; InterPro 96.2 0.0087 1.9E-07 49.2 5.2 51 12-66 19-70 (226)
317 TIGR03015 pepcterm_ATPase puta 96.2 0.05 1.1E-06 46.0 9.8 23 14-37 45-67 (269)
318 PRK04195 replication factor C 96.2 0.022 4.9E-07 52.5 8.1 19 12-30 39-57 (482)
319 PRK10867 signal recognition pa 96.2 0.057 1.2E-06 48.6 10.2 35 14-50 102-136 (433)
320 PRK13341 recombination factor 96.1 0.04 8.6E-07 53.1 9.6 18 13-30 53-70 (725)
321 PRK09112 DNA polymerase III su 96.1 0.022 4.9E-07 49.9 7.3 42 118-161 140-181 (351)
322 PHA03372 DNA packaging termina 96.1 0.067 1.4E-06 49.3 10.3 128 12-160 202-336 (668)
323 TIGR00595 priA primosomal prot 96.1 0.089 1.9E-06 48.7 11.5 77 216-293 24-101 (505)
324 TIGR01547 phage_term_2 phage t 96.1 0.019 4.2E-07 51.6 7.1 141 14-166 3-145 (396)
325 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.04 8.6E-07 42.1 7.6 134 14-168 4-145 (159)
326 PRK06067 flagellar accessory p 96.1 0.011 2.4E-07 48.9 5.1 51 12-66 25-75 (234)
327 PHA00729 NTP-binding motif con 96.0 0.054 1.2E-06 43.9 8.6 18 13-30 18-35 (226)
328 TIGR01073 pcrA ATP-dependent D 96.0 0.006 1.3E-07 59.3 3.8 77 2-80 9-87 (726)
329 PRK13342 recombination factor 96.0 0.06 1.3E-06 48.7 9.9 18 13-30 37-54 (413)
330 KOG0991 Replication factor C, 96.0 0.012 2.6E-07 47.2 4.4 23 13-35 49-71 (333)
331 TIGR02782 TrbB_P P-type conjug 96.0 0.012 2.6E-07 50.4 4.8 45 10-55 130-174 (299)
332 PRK08116 hypothetical protein; 96.0 0.036 7.8E-07 46.7 7.6 43 14-60 116-158 (268)
333 TIGR00767 rho transcription te 96.0 0.023 5E-07 50.0 6.6 30 10-40 166-195 (415)
334 PRK14950 DNA polymerase III su 95.9 0.038 8.2E-07 52.2 8.5 21 13-33 39-59 (585)
335 PRK10416 signal recognition pa 95.9 0.16 3.5E-06 43.9 11.7 47 118-164 195-247 (318)
336 PRK05896 DNA polymerase III su 95.9 0.043 9.3E-07 51.2 8.6 22 13-34 39-60 (605)
337 PRK14948 DNA polymerase III su 95.9 0.041 8.8E-07 52.1 8.6 23 13-35 39-61 (620)
338 PRK13851 type IV secretion sys 95.9 0.01 2.2E-07 51.7 4.2 41 11-55 161-201 (344)
339 COG0378 HypB Ni2+-binding GTPa 95.9 0.42 9.1E-06 37.5 12.3 53 121-173 145-197 (202)
340 PRK06995 flhF flagellar biosyn 95.9 0.082 1.8E-06 48.2 9.9 24 12-35 256-279 (484)
341 PRK13833 conjugal transfer pro 95.8 0.011 2.3E-07 51.0 4.1 45 10-55 142-186 (323)
342 PRK07940 DNA polymerase III su 95.8 0.063 1.4E-06 47.9 8.9 41 118-160 116-156 (394)
343 COG1435 Tdk Thymidine kinase [ 95.8 0.081 1.7E-06 41.4 8.2 105 12-147 4-108 (201)
344 PHA03333 putative ATPase subun 95.8 0.14 3E-06 48.2 11.1 55 12-68 187-241 (752)
345 TIGR00643 recG ATP-dependent D 95.8 0.038 8.2E-07 52.8 7.9 78 216-293 283-365 (630)
346 TIGR02760 TraI_TIGR conjugativ 95.8 0.029 6.3E-07 60.1 7.7 56 2-59 1024-1084(1960)
347 TIGR02012 tigrfam_recA protein 95.8 0.013 2.9E-07 50.3 4.3 44 12-58 55-98 (321)
348 TIGR03600 phage_DnaB phage rep 95.8 0.036 7.8E-07 50.3 7.4 114 12-133 194-319 (421)
349 cd03115 SRP The signal recogni 95.8 0.089 1.9E-06 41.1 8.7 21 15-35 3-23 (173)
350 PRK12724 flagellar biosynthesi 95.8 0.12 2.6E-06 46.1 10.2 55 118-172 298-356 (432)
351 PTZ00293 thymidine kinase; Pro 95.7 0.015 3.2E-07 46.5 4.2 39 12-53 4-42 (211)
352 cd01121 Sms Sms (bacterial rad 95.7 0.025 5.4E-07 50.0 6.0 51 12-66 82-132 (372)
353 PF01443 Viral_helicase1: Vira 95.7 0.0054 1.2E-07 50.7 1.8 16 15-30 1-16 (234)
354 PRK11823 DNA repair protein Ra 95.7 0.023 5E-07 51.7 5.9 51 12-66 80-130 (446)
355 TIGR02397 dnaX_nterm DNA polym 95.7 0.058 1.3E-06 47.7 8.4 18 13-30 37-54 (355)
356 PRK08506 replicative DNA helic 95.7 0.048 1E-06 50.0 7.8 113 12-133 192-316 (472)
357 PF03796 DnaB_C: DnaB-like hel 95.7 0.024 5.2E-07 47.7 5.5 115 12-134 19-145 (259)
358 COG2805 PilT Tfp pilus assembl 95.7 0.0089 1.9E-07 49.8 2.7 33 15-49 128-160 (353)
359 PRK05298 excinuclease ABC subu 95.6 0.055 1.2E-06 51.8 8.3 61 2-68 17-82 (652)
360 COG1200 RecG RecG-like helicas 95.6 0.081 1.7E-06 49.4 8.9 78 216-293 310-392 (677)
361 PRK09354 recA recombinase A; P 95.6 0.017 3.7E-07 50.1 4.4 44 12-58 60-103 (349)
362 PRK06647 DNA polymerase III su 95.6 0.07 1.5E-06 49.9 8.6 22 13-34 39-60 (563)
363 PHA03368 DNA packaging termina 95.6 0.06 1.3E-06 50.3 8.0 136 11-161 253-390 (738)
364 PHA02533 17 large terminase pr 95.6 0.042 9.1E-07 51.0 7.1 69 2-71 64-132 (534)
365 PRK08699 DNA polymerase III su 95.6 0.091 2E-06 45.6 8.7 41 118-160 112-152 (325)
366 PRK14953 DNA polymerase III su 95.6 0.068 1.5E-06 49.1 8.4 21 14-34 40-60 (486)
367 PF01695 IstB_IS21: IstB-like 95.6 0.0094 2E-07 46.8 2.5 46 10-59 45-90 (178)
368 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.015 3.2E-07 48.2 3.8 51 12-66 21-71 (237)
369 PRK11331 5-methylcytosine-spec 95.5 0.036 7.9E-07 49.6 6.1 27 4-30 186-212 (459)
370 PRK07133 DNA polymerase III su 95.4 0.064 1.4E-06 51.2 7.9 21 13-33 41-61 (725)
371 PF05729 NACHT: NACHT domain 95.4 0.098 2.1E-06 40.3 7.9 20 14-33 2-21 (166)
372 COG1702 PhoH Phosphate starvat 95.4 0.0053 1.2E-07 52.1 0.7 49 2-51 133-181 (348)
373 TIGR00959 ffh signal recogniti 95.4 0.16 3.5E-06 45.7 10.0 22 14-35 101-122 (428)
374 PRK13900 type IV secretion sys 95.4 0.019 4.2E-07 49.9 4.1 40 11-54 159-198 (332)
375 PRK08939 primosomal protein Dn 95.4 0.09 1.9E-06 45.2 8.1 19 12-30 156-174 (306)
376 TIGR02928 orc1/cdc6 family rep 95.4 0.04 8.7E-07 49.0 6.3 17 13-29 41-57 (365)
377 PF01637 Arch_ATPase: Archaeal 95.4 0.031 6.7E-07 46.0 5.2 25 12-37 20-44 (234)
378 PRK07004 replicative DNA helic 95.4 0.048 1E-06 49.8 6.7 114 12-133 213-338 (460)
379 TIGR00580 mfd transcription-re 95.3 0.071 1.5E-06 52.9 8.2 78 216-293 499-581 (926)
380 PRK13894 conjugal transfer ATP 95.3 0.02 4.4E-07 49.4 3.9 46 9-55 145-190 (319)
381 KOG0744 AAA+-type ATPase [Post 95.3 0.13 2.9E-06 43.5 8.4 67 12-80 177-257 (423)
382 cd01128 rho_factor Transcripti 95.3 0.047 1E-06 45.3 5.8 32 8-40 12-43 (249)
383 PRK06904 replicative DNA helic 95.3 0.086 1.9E-06 48.3 7.9 115 12-133 221-348 (472)
384 COG3973 Superfamily I DNA and 95.2 0.031 6.8E-07 51.1 4.8 52 12-63 226-280 (747)
385 PRK09376 rho transcription ter 95.2 0.031 6.7E-07 49.0 4.6 31 8-39 165-195 (416)
386 PRK06964 DNA polymerase III su 95.2 0.15 3.2E-06 44.5 8.8 41 118-160 131-171 (342)
387 COG0552 FtsY Signal recognitio 95.2 0.44 9.5E-06 40.8 11.1 129 14-170 141-278 (340)
388 TIGR00665 DnaB replicative DNA 95.2 0.079 1.7E-06 48.3 7.5 113 12-133 195-319 (434)
389 PRK05986 cob(I)alamin adenolsy 95.2 0.058 1.3E-06 42.4 5.6 143 11-168 21-165 (191)
390 PRK09165 replicative DNA helic 95.1 0.14 3E-06 47.3 9.0 115 12-133 217-355 (497)
391 COG0467 RAD55 RecA-superfamily 95.1 0.025 5.5E-07 47.6 3.9 52 11-66 22-73 (260)
392 COG1198 PriA Primosomal protei 95.1 0.13 2.8E-06 49.3 8.6 91 202-293 228-321 (730)
393 PRK08769 DNA polymerase III su 95.0 0.084 1.8E-06 45.5 6.8 42 118-161 112-153 (319)
394 COG1484 DnaC DNA replication p 95.0 0.037 8.1E-07 46.2 4.6 49 11-63 104-152 (254)
395 COG4626 Phage terminase-like p 95.0 0.078 1.7E-06 48.3 6.7 144 1-159 65-223 (546)
396 TIGR03878 thermo_KaiC_2 KaiC d 95.0 0.042 9.2E-07 46.1 4.8 37 12-51 36-72 (259)
397 cd01393 recA_like RecA is a b 94.9 0.034 7.4E-07 45.7 4.1 42 12-53 19-63 (226)
398 PF05876 Terminase_GpA: Phage 94.9 0.099 2.2E-06 49.0 7.5 141 13-164 34-182 (557)
399 COG1132 MdlB ABC-type multidru 94.9 0.24 5.3E-06 46.9 10.3 53 10-67 353-405 (567)
400 PRK05973 replicative DNA helic 94.9 0.034 7.4E-07 45.6 3.9 52 11-66 63-114 (237)
401 TIGR02868 CydC thiol reductant 94.9 0.31 6.8E-06 45.8 10.9 28 10-38 359-386 (529)
402 PRK04841 transcriptional regul 94.9 0.15 3.2E-06 51.4 9.2 42 120-162 122-163 (903)
403 COG4962 CpaF Flp pilus assembl 94.9 0.031 6.7E-07 47.7 3.6 42 12-57 173-214 (355)
404 PRK08760 replicative DNA helic 94.9 0.12 2.6E-06 47.4 7.8 112 12-132 229-352 (476)
405 PRK06305 DNA polymerase III su 94.9 0.13 2.8E-06 46.9 7.9 23 13-35 40-62 (451)
406 PRK14971 DNA polymerase III su 94.8 0.18 3.8E-06 47.9 9.0 40 117-158 119-158 (614)
407 PRK08058 DNA polymerase III su 94.8 0.097 2.1E-06 45.7 6.8 40 118-159 109-148 (329)
408 PRK08006 replicative DNA helic 94.8 0.13 2.7E-06 47.2 7.7 115 12-133 224-350 (471)
409 PLN03187 meiotic recombination 94.8 0.1 2.2E-06 45.6 6.7 42 12-53 126-170 (344)
410 TIGR02525 plasmid_TraJ plasmid 94.8 0.033 7.1E-07 49.1 3.7 37 12-49 149-185 (372)
411 cd01126 TraG_VirD4 The TraG/Tr 94.7 0.05 1.1E-06 48.7 4.9 46 14-64 1-46 (384)
412 TIGR03499 FlhF flagellar biosy 94.7 0.076 1.6E-06 45.2 5.8 25 12-36 194-218 (282)
413 PF02572 CobA_CobO_BtuR: ATP:c 94.7 0.31 6.8E-06 37.7 8.5 139 15-168 6-146 (172)
414 COG2804 PulE Type II secretory 94.7 0.03 6.6E-07 50.4 3.3 26 15-41 261-286 (500)
415 PRK10689 transcription-repair 94.7 0.14 3.1E-06 52.1 8.4 78 216-293 648-730 (1147)
416 TIGR02238 recomb_DMC1 meiotic 94.7 0.11 2.5E-06 44.7 6.7 43 12-54 96-141 (313)
417 COG1110 Reverse gyrase [DNA re 94.7 0.13 2.9E-06 50.1 7.6 72 205-276 113-190 (1187)
418 TIGR00708 cobA cob(I)alamin ad 94.7 0.076 1.6E-06 41.1 5.0 133 14-168 7-147 (173)
419 cd01131 PilT Pilus retraction 94.6 0.035 7.6E-07 44.5 3.4 37 14-52 3-39 (198)
420 KOG0058 Peptide exporter, ABC 94.6 0.037 7.9E-07 51.9 3.8 35 117-152 620-654 (716)
421 PF03266 NTPase_1: NTPase; In 94.6 0.0044 9.5E-08 48.1 -1.8 23 14-37 1-23 (168)
422 PRK05636 replicative DNA helic 94.5 0.14 3E-06 47.3 7.4 113 12-133 265-389 (505)
423 PHA00350 putative assembly pro 94.5 0.2 4.3E-06 44.5 7.9 26 15-40 4-30 (399)
424 PHA02542 41 41 helicase; Provi 94.5 0.094 2E-06 48.0 6.1 50 12-65 190-239 (473)
425 PRK14970 DNA polymerase III su 94.5 0.22 4.7E-06 44.3 8.4 18 13-30 40-57 (367)
426 TIGR01420 pilT_fam pilus retra 94.5 0.052 1.1E-06 47.7 4.3 41 12-54 122-162 (343)
427 PRK07399 DNA polymerase III su 94.4 0.16 3.4E-06 43.9 7.1 60 97-160 103-162 (314)
428 PRK04328 hypothetical protein; 94.4 0.047 1E-06 45.5 3.8 51 12-66 23-73 (249)
429 COG1197 Mfd Transcription-repa 94.4 0.29 6.2E-06 48.8 9.4 85 208-292 633-723 (1139)
430 TIGR02639 ClpA ATP-dependent C 94.4 0.2 4.3E-06 48.9 8.4 18 12-29 203-220 (731)
431 PRK07414 cob(I)yrinic acid a,c 94.3 0.23 4.9E-06 38.6 7.0 135 14-168 23-165 (178)
432 PF00437 T2SE: Type II/IV secr 94.3 0.029 6.2E-07 47.6 2.3 42 11-55 126-167 (270)
433 PRK04301 radA DNA repair and r 94.3 0.16 3.5E-06 44.1 7.0 42 12-53 102-146 (317)
434 COG0630 VirB11 Type IV secreto 94.3 0.055 1.2E-06 46.7 4.0 44 7-54 138-181 (312)
435 PRK06871 DNA polymerase III su 94.3 0.25 5.3E-06 42.8 7.9 41 118-160 106-146 (325)
436 PHA00012 I assembly protein 94.2 0.46 1E-05 40.6 9.1 26 15-40 4-29 (361)
437 PRK08533 flagellar accessory p 94.2 0.066 1.4E-06 44.1 4.2 51 11-65 23-73 (230)
438 PRK06321 replicative DNA helic 94.2 0.32 6.9E-06 44.6 8.9 112 12-132 226-349 (472)
439 cd01123 Rad51_DMC1_radA Rad51_ 94.2 0.15 3.2E-06 42.1 6.4 42 12-53 19-63 (235)
440 PF03237 Terminase_6: Terminas 94.2 0.84 1.8E-05 40.5 11.7 43 16-58 1-43 (384)
441 KOG0741 AAA+-type ATPase [Post 94.2 0.23 5E-06 45.1 7.5 22 118-139 597-618 (744)
442 PF12846 AAA_10: AAA-like doma 94.2 0.036 7.9E-07 47.7 2.8 40 12-54 1-40 (304)
443 COG1219 ClpX ATP-dependent pro 94.2 0.033 7.1E-07 46.9 2.2 18 13-30 98-115 (408)
444 PRK08840 replicative DNA helic 94.2 0.2 4.4E-06 45.8 7.5 114 12-132 217-342 (464)
445 cd01130 VirB11-like_ATPase Typ 94.1 0.074 1.6E-06 42.2 4.1 28 10-38 23-50 (186)
446 PRK05748 replicative DNA helic 94.1 0.12 2.7E-06 47.2 6.0 113 12-132 203-327 (448)
447 COG2812 DnaX DNA polymerase II 94.0 0.081 1.8E-06 48.4 4.7 40 117-160 117-156 (515)
448 COG1474 CDC6 Cdc6-related prot 94.0 0.25 5.5E-06 43.6 7.6 27 13-40 43-69 (366)
449 TIGR02788 VirB11 P-type DNA tr 94.0 0.071 1.5E-06 46.1 4.1 28 11-39 143-170 (308)
450 PRK09087 hypothetical protein; 94.0 0.14 3E-06 42.0 5.6 17 13-29 45-61 (226)
451 PF08423 Rad51: Rad51; InterP 94.0 0.11 2.4E-06 43.5 5.1 41 15-55 41-84 (256)
452 PRK06090 DNA polymerase III su 93.9 0.3 6.6E-06 42.2 7.7 43 117-161 106-148 (319)
453 PF13481 AAA_25: AAA domain; P 93.9 0.099 2.1E-06 41.7 4.6 57 11-68 31-94 (193)
454 TIGR02640 gas_vesic_GvpN gas v 93.9 0.046 1E-06 46.0 2.7 29 4-32 13-41 (262)
455 TIGR02237 recomb_radB DNA repa 93.8 0.05 1.1E-06 44.1 2.8 38 12-52 12-49 (209)
456 KOG0344 ATP-dependent RNA heli 93.8 1.4 3E-05 40.6 11.7 100 21-131 366-468 (593)
457 PRK10436 hypothetical protein; 93.8 0.067 1.4E-06 48.7 3.7 26 12-38 218-243 (462)
458 TIGR03881 KaiC_arch_4 KaiC dom 93.8 0.089 1.9E-06 43.3 4.2 50 11-64 19-68 (229)
459 cd01129 PulE-GspE PulE/GspE Th 93.8 0.079 1.7E-06 44.6 3.9 25 13-38 81-105 (264)
460 PF06733 DEAD_2: DEAD_2; Inte 93.8 0.034 7.3E-07 43.6 1.6 38 96-133 120-159 (174)
461 TIGR03880 KaiC_arch_3 KaiC dom 93.8 0.094 2E-06 43.0 4.3 51 12-66 16-66 (224)
462 PRK12608 transcription termina 93.8 0.12 2.6E-06 45.3 5.0 28 10-38 131-158 (380)
463 COG2109 BtuR ATP:corrinoid ade 93.8 0.4 8.6E-06 37.4 7.2 139 15-168 31-172 (198)
464 COG1444 Predicted P-loop ATPas 93.7 0.26 5.7E-06 47.1 7.5 134 5-162 222-357 (758)
465 PF02534 T4SS-DNA_transf: Type 93.7 0.11 2.5E-06 47.8 5.2 48 13-65 45-92 (469)
466 TIGR02858 spore_III_AA stage I 93.7 0.77 1.7E-05 38.7 9.6 26 13-39 112-137 (270)
467 PF03969 AFG1_ATPase: AFG1-lik 93.6 0.26 5.7E-06 43.4 6.9 109 12-164 62-171 (362)
468 PRK11034 clpA ATP-dependent Cl 93.6 0.27 5.8E-06 47.9 7.5 19 12-30 207-225 (758)
469 COG1074 RecB ATP-dependent exo 93.5 0.096 2.1E-06 53.6 4.5 58 12-69 16-75 (1139)
470 PRK07993 DNA polymerase III su 93.4 0.23 5.1E-06 43.3 6.3 41 118-160 107-147 (334)
471 TIGR03345 VI_ClpV1 type VI sec 93.4 0.35 7.5E-06 48.0 8.1 123 2-170 192-333 (852)
472 PRK05800 cobU adenosylcobinami 93.4 0.56 1.2E-05 36.5 7.8 50 13-68 2-51 (170)
473 TIGR01243 CDC48 AAA family ATP 93.4 0.54 1.2E-05 46.1 9.3 18 12-29 212-229 (733)
474 KOG0742 AAA+-type ATPase [Post 93.3 0.2 4.3E-06 43.9 5.5 17 13-29 385-401 (630)
475 cd00544 CobU Adenosylcobinamid 93.3 0.57 1.2E-05 36.4 7.7 49 15-69 2-50 (169)
476 TIGR02784 addA_alphas double-s 93.3 0.14 3E-06 52.7 5.5 58 12-69 10-67 (1141)
477 TIGR02533 type_II_gspE general 93.3 0.097 2.1E-06 48.2 3.9 25 14-39 244-268 (486)
478 cd01394 radB RadB. The archaea 93.3 0.076 1.6E-06 43.3 2.9 36 12-50 19-54 (218)
479 PF13555 AAA_29: P-loop contai 93.3 0.063 1.4E-06 33.6 1.8 18 12-29 23-40 (62)
480 PRK05595 replicative DNA helic 93.2 0.23 4.9E-06 45.4 6.2 112 12-133 201-325 (444)
481 TIGR00763 lon ATP-dependent pr 93.2 0.68 1.5E-05 45.6 9.8 18 12-29 347-364 (775)
482 PRK07773 replicative DNA helic 93.2 0.25 5.5E-06 49.3 6.9 113 12-133 217-341 (886)
483 PRK13897 type IV secretion sys 93.1 0.18 4E-06 47.5 5.5 49 12-65 158-206 (606)
484 PRK10865 protein disaggregatio 93.1 0.41 9E-06 47.5 8.2 19 12-30 199-217 (857)
485 TIGR00614 recQ_fam ATP-depende 93.1 1.7 3.6E-05 40.2 11.7 77 217-293 51-135 (470)
486 KOG1807 Helicases [Replication 93.1 0.079 1.7E-06 49.9 3.0 63 2-64 383-448 (1025)
487 TIGR02880 cbbX_cfxQ probable R 93.1 0.1 2.3E-06 44.4 3.6 18 12-29 58-75 (284)
488 TIGR02524 dot_icm_DotB Dot/Icm 93.1 0.11 2.4E-06 45.7 3.8 27 11-38 133-159 (358)
489 COG1618 Predicted nucleotide k 93.0 0.17 3.7E-06 38.3 4.1 28 12-40 5-32 (179)
490 KOG2228 Origin recognition com 93.0 2.2 4.8E-05 36.8 11.0 18 12-29 49-66 (408)
491 TIGR03346 chaperone_ClpB ATP-d 93.0 0.44 9.5E-06 47.4 8.2 19 12-30 194-212 (852)
492 PLN02165 adenylate isopentenyl 93.0 0.067 1.4E-06 46.1 2.2 22 10-31 41-62 (334)
493 cd00983 recA RecA is a bacter 92.9 0.12 2.6E-06 44.6 3.7 45 12-59 55-99 (325)
494 TIGR02655 circ_KaiC circadian 92.8 0.11 2.5E-06 47.9 3.7 51 12-66 263-313 (484)
495 PF02456 Adeno_IVa2: Adenoviru 92.7 0.16 3.4E-06 42.8 3.9 40 15-55 90-129 (369)
496 CHL00095 clpC Clp protease ATP 92.7 0.34 7.4E-06 48.0 7.0 19 12-30 200-218 (821)
497 PF01078 Mg_chelatase: Magnesi 92.7 0.069 1.5E-06 42.5 1.8 19 11-29 21-39 (206)
498 PF13207 AAA_17: AAA domain; P 92.7 0.084 1.8E-06 38.4 2.2 16 15-30 2-17 (121)
499 COG1222 RPT1 ATP-dependent 26S 92.7 0.16 3.6E-06 43.6 4.0 40 12-58 185-224 (406)
500 PF04665 Pox_A32: Poxvirus A32 92.6 0.14 3E-06 42.0 3.6 41 8-51 8-49 (241)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-57 Score=367.49 Aligned_cols=340 Identities=36% Similarity=0.622 Sum_probs=314.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|++++|.++.|++++..|.||||||.+|++++++.+...+..+.+++++|+|+|+.|+.+.++.+.... ++.+..+.|
T Consensus 87 IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvG 165 (476)
T KOG0330|consen 87 IQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVG 165 (476)
T ss_pred hhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEec
Confidence 6999999999999999999999999999999999999999888999999999999999999999998877 999999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHh-cCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALAR-DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~-~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
|.+...+...+... ++|+|+||..+..++. ...+++..++++|+|||+++.+ .+|...+..+++.++...|.+++||
T Consensus 166 G~~m~~q~~~L~kk-PhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd-~dF~~~ld~ILk~ip~erqt~LfsA 243 (476)
T KOG0330|consen 166 GMDMMLQANQLSKK-PHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLD-MDFEEELDYILKVIPRERQTFLFSA 243 (476)
T ss_pred CchHHHHHHHhhcC-CCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhh-hhhHHHHHHHHHhcCccceEEEEEe
Confidence 99988877776665 6999999999999998 5667889999999999999998 8999999999999999999999999
Q ss_pred cCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
|++..+.++....+.+|..+...... .....+.+.|...+...+...+..+++...++.+||||++-..+..++-.|..
T Consensus 244 TMt~kv~kL~rasl~~p~~v~~s~ky-~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~ 322 (476)
T KOG0330|consen 244 TMTKKVRKLQRASLDNPVKVAVSSKY-QTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRN 322 (476)
T ss_pred ecchhhHHHHhhccCCCeEEeccchh-cchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHh
Confidence 99999999988888888877665443 45566788899999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEE
Q 018420 240 CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 319 (356)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~ 319 (356)
.|..+..+||.|++..|.-.++.|++|.++||+||+++++|+|+|.+++||+||.|.+..+|++|+||++|.|..|.++.
T Consensus 323 lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~It 402 (476)
T KOG0330|consen 323 LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAIT 402 (476)
T ss_pred cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCChHHHHHHHHHhcccCcccC
Q 018420 320 FVSSASDSDILNQVQARFEVDIKELP 345 (356)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (356)
++.. -|-+.+..++..+++.+.+.+
T Consensus 403 lVtq-yDve~~qrIE~~~gkkl~~~~ 427 (476)
T KOG0330|consen 403 LVTQ-YDVELVQRIEHALGKKLPEYK 427 (476)
T ss_pred EEeh-hhhHHHHHHHHHHhcCCCccC
Confidence 9995 777888899988888876543
No 2
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.5e-55 Score=398.95 Aligned_cols=337 Identities=34% Similarity=0.591 Sum_probs=300.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.+|++.+++++++++++|||||||++|+++++..+......++++|++|+++|+.|+.++++.+....+++.+..+.|
T Consensus 30 iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~G 109 (460)
T PRK11776 30 IQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCG 109 (460)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 59999999999999999999999999999999999886655555899999999999999999999887666889999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.+...+...+..+ ++|+|+||+.+..++.+....++++++||+||||++.+ .++...+..+....+...|++++|||
T Consensus 110 g~~~~~~~~~l~~~-~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~-~g~~~~l~~i~~~~~~~~q~ll~SAT 187 (460)
T PRK11776 110 GVPMGPQIDSLEHG-AHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLD-MGFQDAIDAIIRQAPARRQTLLFSAT 187 (460)
T ss_pred CCChHHHHHHhcCC-CCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhC-cCcHHHHHHHHHhCCcccEEEEEEec
Confidence 99887777666644 69999999999999998888899999999999999987 78889999999999999999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~ 240 (356)
+++....+...++.+|..+....... ...+.+.+.......+...+..++......++||||++++.++.+++.|...
T Consensus 188 ~~~~~~~l~~~~~~~~~~i~~~~~~~--~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~ 265 (460)
T PRK11776 188 YPEGIAAISQRFQRDPVEVKVESTHD--LPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ 265 (460)
T ss_pred CcHHHHHHHHHhcCCCEEEEECcCCC--CCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC
Confidence 99998888999999998777655432 3345666777777778888888888777789999999999999999999999
Q ss_pred CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 241 NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.++++
T Consensus 266 ~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l 345 (460)
T PRK11776 266 GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSL 345 (460)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCChHHHHHHHHHhcccCc
Q 018420 321 VSSASDSDILNQVQARFEVDIK 342 (356)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~ 342 (356)
+.+ .+...++.+++.+...++
T Consensus 346 ~~~-~e~~~~~~i~~~~~~~~~ 366 (460)
T PRK11776 346 VAP-EEMQRANAIEDYLGRKLN 366 (460)
T ss_pred Ech-hHHHHHHHHHHHhCCCCc
Confidence 985 456666777777766544
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-56 Score=386.59 Aligned_cols=345 Identities=33% Similarity=0.565 Sum_probs=313.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC------CCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
||.+.|+.++.|++++..+.||||||++|+++++.++.. .++.|.+++++|||+|+.|+.+.+..+.... .++
T Consensus 117 IQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~-~~~ 195 (519)
T KOG0331|consen 117 IQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSL-RLR 195 (519)
T ss_pred hhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCC-Ccc
Confidence 699999999999999999999999999999999988775 3456789999999999999999999998876 688
Q ss_pred EEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhC-CCCCc
Q 018420 75 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQ 153 (356)
Q Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~ 153 (356)
..++.||.....+...+..+ .+|+|+||..+..++......++.+.++|+|||+++.+ .+|...+..+.... ++..|
T Consensus 196 ~~cvyGG~~~~~Q~~~l~~g-vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMld-mGFe~qI~~Il~~i~~~~rQ 273 (519)
T KOG0331|consen 196 STCVYGGAPKGPQLRDLERG-VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLD-MGFEPQIRKILSQIPRPDRQ 273 (519)
T ss_pred EEEEeCCCCccHHHHHHhcC-CcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhc-cccHHHHHHHHHhcCCCccc
Confidence 99999999999999988887 69999999999999999999999999999999999998 89999999999999 55558
Q ss_pred EEEEEecCccchHHHHHhhcCCCeEEEeccc-cccccccceEEEEEcChhHHHHHHHHHHhcc---CCCeEEEEecchhh
Q 018420 154 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDE-AKLTLHGLVQHYIKLSELEKNRKLNDLLDAL---DFNQVVIFVKSVSR 229 (356)
Q Consensus 154 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivf~~~~~~ 229 (356)
.++.|||.+..++.++..++.+|..+.+... .......+.+....+....+...+..++... ..+++||||.++..
T Consensus 274 tlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~ 353 (519)
T KOG0331|consen 274 TLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRT 353 (519)
T ss_pred EEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhh
Confidence 9999999999999999999999998887755 5555666677777777777877777777665 56799999999999
Q ss_pred HHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhcccccc
Q 018420 230 AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 309 (356)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 309 (356)
|..+...+...++++..+||+.++.+|..+++.|++|+..|||||+++++|+|+|++++||+|++|.+.++|+||+||+|
T Consensus 354 ~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTG 433 (519)
T KOG0331|consen 354 CDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTG 433 (519)
T ss_pred HHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEccCCChHHHHHHHHHhcccCcccCcccc
Q 018420 310 RFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 349 (356)
Q Consensus 310 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (356)
|.|+.|.+++++.. .+......+.+.++...+.++.++.
T Consensus 434 Ra~~~G~A~tfft~-~~~~~a~~l~~~l~e~~q~v~~~l~ 472 (519)
T KOG0331|consen 434 RAGKKGTAITFFTS-DNAKLARELIKVLREAGQTVPPDLL 472 (519)
T ss_pred cCCCCceEEEEEeH-HHHHHHHHHHHHHHHccCCCChHHH
Confidence 99999999999995 5667777888887777777776654
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.8e-55 Score=400.68 Aligned_cols=345 Identities=31% Similarity=0.538 Sum_probs=296.4
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-----CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
+|.++++.+++|+++++++|||||||++|+++++..+... ..++.++|++|+++|+.|+.+.++.+.... ++++
T Consensus 156 iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~ 234 (545)
T PTZ00110 156 IQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASS-KIRN 234 (545)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhccc-CccE
Confidence 5999999999999999999999999999999887654321 234579999999999999999999987765 7888
Q ss_pred EEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEE
Q 018420 76 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 155 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (356)
..+.|+.....+...+..+ .+|+|+||+.|..++......++.+++||+||||++.+ .++...+..+...+++..|++
T Consensus 235 ~~~~gg~~~~~q~~~l~~~-~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld-~gf~~~i~~il~~~~~~~q~l 312 (545)
T PTZ00110 235 TVAYGGVPKRGQIYALRRG-VEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLD-MGFEPQIRKIVSQIRPDRQTL 312 (545)
T ss_pred EEEeCCCCHHHHHHHHHcC-CCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhh-cchHHHHHHHHHhCCCCCeEE
Confidence 8888888877666666655 69999999999999988888889999999999999987 688888999999888899999
Q ss_pred EEEecCccchHHHHHhhcC-CCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHH
Q 018420 156 MFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAE 232 (356)
Q Consensus 156 ~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~ 232 (356)
++|||++..+..+...++. ++..+............+.+.+.......+...+..++... ...++||||++++.++.
T Consensus 313 ~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~ 392 (545)
T PTZ00110 313 MWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADF 392 (545)
T ss_pred EEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHH
Confidence 9999999988888887775 46666554443333344555565556666667777777654 56799999999999999
Q ss_pred HHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCC
Q 018420 233 LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 312 (356)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 312 (356)
+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|
T Consensus 393 l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 393 LTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred HHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEccCCChHHHHHHHHHhcccCcccCcccc
Q 018420 313 TKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 349 (356)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (356)
+.|.+++|+.+ ++....+.+.+.+....+++|+.+.
T Consensus 473 ~~G~ai~~~~~-~~~~~~~~l~~~l~~~~q~vp~~l~ 508 (545)
T PTZ00110 473 AKGASYTFLTP-DKYRLARDLVKVLREAKQPVPPELE 508 (545)
T ss_pred CCceEEEEECc-chHHHHHHHHHHHHHccCCCCHHHH
Confidence 99999999985 5667778888888888888886653
No 5
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.1e-55 Score=389.73 Aligned_cols=339 Identities=31% Similarity=0.487 Sum_probs=289.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-------CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-------PGQVTALVLCHTRELAYQICHEFERFSTYLPDI 73 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~ 73 (356)
+|.+|++.+++|+++++.||||||||++|+++++..+... ...++++|++|+++|+.|+.+.+..+.... ++
T Consensus 34 iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~-~~ 112 (423)
T PRK04837 34 IQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQAT-GL 112 (423)
T ss_pred HHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccC-Cc
Confidence 5999999999999999999999999999999988655322 223589999999999999999999888776 88
Q ss_pred eEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCC--C
Q 018420 74 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH--D 151 (356)
Q Consensus 74 ~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~--~ 151 (356)
.+..+.|+.....+...+..+ ++|+|+||+.+..++....+.+.+++++|+||||++.+ .++...+..++...+. .
T Consensus 113 ~v~~~~gg~~~~~~~~~l~~~-~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~-~~f~~~i~~i~~~~~~~~~ 190 (423)
T PRK04837 113 KLGLAYGGDGYDKQLKVLESG-VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFD-LGFIKDIRWLFRRMPPANQ 190 (423)
T ss_pred eEEEEECCCCHHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhh-cccHHHHHHHHHhCCCccc
Confidence 999999998877776666554 69999999999999988888899999999999999987 6788888888877764 4
Q ss_pred CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHH
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAA 231 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~ 231 (356)
.+.+++|||++..........+.+|..+....... ....+.+.+.......+...+..++......++||||++++.++
T Consensus 191 ~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~ 269 (423)
T PRK04837 191 RLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQK-TGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCE 269 (423)
T ss_pred eeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCc-CCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 56799999999988888888888887776543322 23344445555555667777777777777789999999999999
Q ss_pred HHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCC
Q 018420 232 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 311 (356)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 311 (356)
.++..|.+.+.++..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.
T Consensus 270 ~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~ 349 (423)
T PRK04837 270 EIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA 349 (423)
T ss_pred HHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEccCCChHHHHHHHHHhcccCccc
Q 018420 312 GTKGLAITFVSSASDSDILNQVQARFEVDIKEL 344 (356)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (356)
|+.|.+++|+.+ .+...+..+++.+...+...
T Consensus 350 G~~G~ai~~~~~-~~~~~~~~i~~~~~~~~~~~ 381 (423)
T PRK04837 350 GASGHSISLACE-EYALNLPAIETYIGHSIPVS 381 (423)
T ss_pred CCCeeEEEEeCH-HHHHHHHHHHHHhCCCCCCc
Confidence 999999999985 45556777777777665443
No 6
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.7e-54 Score=398.72 Aligned_cols=340 Identities=35% Similarity=0.636 Sum_probs=301.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+++++++++.||||||||++|+++++..+......+++||++|+++|+.|+++.+..+....+++.+..++|
T Consensus 32 iQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~g 111 (629)
T PRK11634 32 IQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYG 111 (629)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 59999999999999999999999999999999988776555556899999999999999999999988777899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.....+...+..+ ++|+|+||+.++.++.+..+.++++++||+||||++.. .++...+..+...++...|++++|||
T Consensus 112 G~~~~~q~~~l~~~-~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~-~gf~~di~~Il~~lp~~~q~llfSAT 189 (629)
T PRK11634 112 GQRYDVQLRALRQG-PQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSAT 189 (629)
T ss_pred CcCHHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhh-cccHHHHHHHHHhCCCCCeEEEEEcc
Confidence 98887777666654 69999999999999998888899999999999999987 68888899999999999999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~ 240 (356)
+++.+..+...++.+|..+.+.... .....+.+.+.......+...+..++......++||||+++..+..+++.|...
T Consensus 190 ~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~ 268 (629)
T PRK11634 190 MPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN 268 (629)
T ss_pred CChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC
Confidence 9999999999999998877655433 233445566666666677788888888777789999999999999999999999
Q ss_pred CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 241 NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
++.+..+||++++.+|.++++.|++|+++|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.++++
T Consensus 269 g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 269 GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCChHHHHHHHHHhcccCccc
Q 018420 321 VSSASDSDILNQVQARFEVDIKEL 344 (356)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~ 344 (356)
+.+ .+...++.+++.+...+.++
T Consensus 349 v~~-~e~~~l~~ie~~~~~~i~~~ 371 (629)
T PRK11634 349 VEN-RERRLLRNIERTMKLTIPEV 371 (629)
T ss_pred ech-HHHHHHHHHHHHhCCCccee
Confidence 984 56677888888777776554
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-54 Score=391.14 Aligned_cols=340 Identities=40% Similarity=0.659 Sum_probs=309.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC--CCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP--NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~--~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|.+++|.++.|++++..|+||||||++|.+++++.+.. ......++|++|||+|+.|+.+.++.+....+++.+..+
T Consensus 55 IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i 134 (513)
T COG0513 55 IQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVV 134 (513)
T ss_pred HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEE
Confidence 599999999999999999999999999999999999763 222212899999999999999999999887656889999
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
.||.....+...+..+ ++|+|+||..++.++.+..+.++.+.++|+|||+++.+ .+|...+..+...++.+.|++++|
T Consensus 135 ~GG~~~~~q~~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd-~Gf~~~i~~I~~~~p~~~qtllfS 212 (513)
T COG0513 135 YGGVSIRKQIEALKRG-VDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD-MGFIDDIEKILKALPPDRQTLLFS 212 (513)
T ss_pred ECCCCHHHHHHHHhcC-CCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc-CCCHHHHHHHHHhCCcccEEEEEe
Confidence 9999999888888876 89999999999999999999999999999999999999 699999999999999999999999
Q ss_pred ecCccchHHHHHhhcCCCeEEEeccc-cccccccceEEEEEcChhH-HHHHHHHHHhccCCCeEEEEecchhhHHHHHHH
Q 018420 159 ATLSKEIRPVCKKFMQDPMEIYVDDE-AKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKL 236 (356)
Q Consensus 159 aT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~ 236 (356)
||+++.+..+...++.+|..+.+... .......+.+.+..+.... +...+..++......++||||++...+..++..
T Consensus 213 AT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~ 292 (513)
T COG0513 213 ATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAES 292 (513)
T ss_pred cCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHH
Confidence 99999999999999999987777632 2236677888888888765 999999999988878899999999999999999
Q ss_pred HHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcce
Q 018420 237 LVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 316 (356)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~ 316 (356)
|...|+++..+||++++.+|.+.++.|++|+.+|||||+++++|+|+|++++||+|+.|.+.+.|+||+||+||.|..|.
T Consensus 293 l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ 372 (513)
T COG0513 293 LRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGV 372 (513)
T ss_pred HHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCChHHHHHHHHHhcccCc
Q 018420 317 AITFVSSASDSDILNQVQARFEVDIK 342 (356)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (356)
++.|+.+..+...+..+++.+...+.
T Consensus 373 ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 373 AISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999975578888888887666533
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.7e-54 Score=388.01 Aligned_cols=337 Identities=33% Similarity=0.583 Sum_probs=292.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCC------CCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP------GQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~------~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
+|.++++.+++++++++++|||||||++|+++++..+.... ...+++|++|+++|+.|+.+.++.+.... ++.
T Consensus 27 iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~-~~~ 105 (456)
T PRK10590 27 IQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIR 105 (456)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccC-CCE
Confidence 59999999999999999999999999999999988764322 23479999999999999999999988776 788
Q ss_pred EEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcE
Q 018420 75 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 154 (356)
Q Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (356)
+..++|+.....+...+... ++|+|+||+.++.+.......++.+++||+||||++.+ .++...+..++..++...|.
T Consensus 106 ~~~~~gg~~~~~~~~~l~~~-~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~-~~~~~~i~~il~~l~~~~q~ 183 (456)
T PRK10590 106 SLVVFGGVSINPQMMKLRGG-VDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLD-MGFIHDIRRVLAKLPAKRQN 183 (456)
T ss_pred EEEEECCcCHHHHHHHHcCC-CcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhc-cccHHHHHHHHHhCCccCeE
Confidence 88899998877766555544 69999999999999888888899999999999999987 67888888888888888999
Q ss_pred EEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHH
Q 018420 155 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELN 234 (356)
Q Consensus 155 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~ 234 (356)
+++|||++.....+...++.+|..+...... .....+.+.+.......+...+..++......++||||++++.++.++
T Consensus 184 l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~ 262 (456)
T PRK10590 184 LLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLA 262 (456)
T ss_pred EEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHH
Confidence 9999999998888888888888776654332 223445555666666666777777777777789999999999999999
Q ss_pred HHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCc
Q 018420 235 KLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK 314 (356)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~ 314 (356)
+.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|..
T Consensus 263 ~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~ 342 (456)
T PRK10590 263 EQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAAT 342 (456)
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEccCCChHHHHHHHHHhcccCc
Q 018420 315 GLAITFVSSASDSDILNQVQARFEVDIK 342 (356)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (356)
|.+++++.. ++...++.+++.+..++.
T Consensus 343 G~ai~l~~~-~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 343 GEALSLVCV-DEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred eeEEEEecH-HHHHHHHHHHHHhcCCCc
Confidence 999999985 566777888887766653
No 9
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.3e-54 Score=388.08 Aligned_cols=341 Identities=30% Similarity=0.585 Sum_probs=293.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCC-------CCeeEEEEcCchHHHHHHHHHHHHHhccCCCc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-------GQVTALVLCHTRELAYQICHEFERFSTYLPDI 73 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~ 73 (356)
+|.++++.+.+|+++++.+|||||||++|+++++..+...+ +.++++|++|+++|+.|+.+.++.+.... ++
T Consensus 113 iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~-~~ 191 (475)
T PRK01297 113 IQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-GL 191 (475)
T ss_pred HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccC-CC
Confidence 59999999999999999999999999999999988765442 13589999999999999999999887766 78
Q ss_pred eEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCC--C
Q 018420 74 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH--D 151 (356)
Q Consensus 74 ~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~--~ 151 (356)
.+..+.|+.......+.+....++|+|+||++++.+..++...++++++|||||+|++.+ .++...+..+....+. .
T Consensus 192 ~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~-~~~~~~l~~i~~~~~~~~~ 270 (475)
T PRK01297 192 NVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD-MGFIPQVRQIIRQTPRKEE 270 (475)
T ss_pred EEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHh-cccHHHHHHHHHhCCCCCC
Confidence 999999998877777766666679999999999998888888899999999999999987 6777778888777653 5
Q ss_pred CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHH
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAA 231 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~ 231 (356)
.|++++|||++.+.......+..+|..+...... .......+.+.......+...+..++......++||||++++.++
T Consensus 271 ~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~ 349 (475)
T PRK01297 271 RQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVR 349 (475)
T ss_pred ceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHH
Confidence 6899999999988888888888888776554332 222333445555555666777777777777789999999999999
Q ss_pred HHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCC
Q 018420 232 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 311 (356)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 311 (356)
.+++.|...+..+..+||++++.+|.++++.|++|++++||||+++++|+|+|++++||+++.|.|..+|+||+||+||.
T Consensus 350 ~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~ 429 (475)
T PRK01297 350 RIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRA 429 (475)
T ss_pred HHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEccCCChHHHHHHHHHhcccC-cccC
Q 018420 312 GTKGLAITFVSSASDSDILNQVQARFEVDI-KELP 345 (356)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 345 (356)
|++|.+++++.. +|..++..+++.+...+ +++|
T Consensus 430 g~~g~~i~~~~~-~d~~~~~~~~~~~~~~~~~~~~ 463 (475)
T PRK01297 430 GASGVSISFAGE-DDAFQLPEIEELLGRKISCEMP 463 (475)
T ss_pred CCCceEEEEecH-HHHHHHHHHHHHhCCCCcccCC
Confidence 999999999985 57777888988888776 3444
No 10
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.7e-54 Score=391.72 Aligned_cols=338 Identities=30% Similarity=0.523 Sum_probs=289.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-------CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-------PGQVTALVLCHTRELAYQICHEFERFSTYLPDI 73 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~ 73 (356)
+|.++++.+++++++++.+|||||||++|+++++..+... ...+++||++|+++|+.|+.+.+..+.... ++
T Consensus 35 iQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~-~i 113 (572)
T PRK04537 35 IQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GL 113 (572)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccC-Cc
Confidence 5999999999999999999999999999999998765321 123589999999999999999999988776 88
Q ss_pred eEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC-CcccCCccEEEEeccccccccccchhHHHHHHhhCCC--
Q 018420 74 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH-- 150 (356)
Q Consensus 74 ~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~-- 150 (356)
.+..++|+.....+.+.+... ++|+|+||+.|+.++.+. .+.+..+++||+||||++.+ .++...+..++..++.
T Consensus 114 ~v~~l~Gg~~~~~q~~~l~~~-~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld-~gf~~~i~~il~~lp~~~ 191 (572)
T PRK04537 114 RFALVYGGVDYDKQRELLQQG-VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFD-LGFIKDIRFLLRRMPERG 191 (572)
T ss_pred eEEEEECCCCHHHHHHHHhCC-CCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhh-cchHHHHHHHHHhccccc
Confidence 999999999887777666554 699999999999988764 46678899999999999987 6788888888877765
Q ss_pred CCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhH
Q 018420 151 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRA 230 (356)
Q Consensus 151 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~ 230 (356)
..|++++|||++..+......++..|..+...... .....+.+.+.......+...+..++......++||||++++.+
T Consensus 192 ~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~a 270 (572)
T PRK04537 192 TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFV 270 (572)
T ss_pred CceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHH
Confidence 67999999999998888888888887666554332 23344555566666667777788888777778999999999999
Q ss_pred HHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccC
Q 018420 231 AELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 310 (356)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 310 (356)
+.+++.|...++.+..+||++++.+|.++++.|++|+++|||||+++++|+|+|++++||+|+.|.+..+|+||+||+||
T Consensus 271 e~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR 350 (572)
T PRK04537 271 ERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR 350 (572)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEccCCChHHHHHHHHHhcccCcc
Q 018420 311 FGTKGLAITFVSSASDSDILNQVQARFEVDIKE 343 (356)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (356)
.|+.|.+++|++. .+...+..+++.+..++..
T Consensus 351 ~G~~G~ai~~~~~-~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 351 LGEEGDAISFACE-RYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred CCCCceEEEEecH-HHHHHHHHHHHHHcCCCCc
Confidence 9999999999985 4555677777776665543
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8e-54 Score=390.17 Aligned_cols=348 Identities=32% Similarity=0.499 Sum_probs=293.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC-------CCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-------NPGQVTALVLCHTRELAYQICHEFERFSTYLPDI 73 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-------~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~ 73 (356)
+|.++++.+++|+++++.+|||||||++|+++++..+.. ...+++++|++|+++|+.|+.+.++.+.... ++
T Consensus 147 iQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~ 225 (518)
T PLN00206 147 IQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL-PF 225 (518)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-Cc
Confidence 599999999999999999999999999999998865421 1234589999999999999999998887766 67
Q ss_pred eEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCc
Q 018420 74 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 153 (356)
Q Consensus 74 ~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~ 153 (356)
.+..+.|+.....+...+..+ .+|+|+||+.+..++.+....++++++||+||||++.+ .++...+..+....+ ..|
T Consensus 226 ~~~~~~gG~~~~~q~~~l~~~-~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~-~gf~~~i~~i~~~l~-~~q 302 (518)
T PLN00206 226 KTALVVGGDAMPQQLYRIQQG-VELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLE-RGFRDQVMQIFQALS-QPQ 302 (518)
T ss_pred eEEEEECCcchHHHHHHhcCC-CCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhh-cchHHHHHHHHHhCC-CCc
Confidence 888888888777666656554 69999999999999988888899999999999999987 678888888877774 679
Q ss_pred EEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHH
Q 018420 154 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAA 231 (356)
Q Consensus 154 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~ 231 (356)
++++|||+++.+..+...+..++..+...... .......+.+.......+...+..++... ...++||||+++..++
T Consensus 303 ~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~ 381 (518)
T PLN00206 303 VLLFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGAD 381 (518)
T ss_pred EEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHH
Confidence 99999999999888888888888766654432 22233344455555555666666666543 2368999999999999
Q ss_pred HHHHHHHh-CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccC
Q 018420 232 ELNKLLVE-CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 310 (356)
Q Consensus 232 ~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 310 (356)
.+++.|.. .+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||
T Consensus 382 ~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR 461 (518)
T PLN00206 382 LLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASR 461 (518)
T ss_pred HHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcccccc
Confidence 99999975 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEccCCChHHHHHHHHHhcccCcccCcccccCCCC
Q 018420 311 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 354 (356)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (356)
.|..|.+++++.. ++...+..+.+.++...+.+|+++.++.++
T Consensus 462 ~g~~G~ai~f~~~-~~~~~~~~l~~~l~~~~~~vp~~l~~~~~~ 504 (518)
T PLN00206 462 MGEKGTAIVFVNE-EDRNLFPELVALLKSSGAAIPRELANSRYL 504 (518)
T ss_pred CCCCeEEEEEEch-hHHHHHHHHHHHHHHcCCCCCHHHHhChhh
Confidence 9999999999985 556677788888888888999988877665
No 12
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.1e-53 Score=380.89 Aligned_cols=336 Identities=35% Similarity=0.570 Sum_probs=286.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC----CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~ 76 (356)
+|.++++.+++++++++++|||+|||++|+++++..+... ....+++|++|+++|+.|+.+.++.+.... ++.+.
T Consensus 27 iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~-~~~v~ 105 (434)
T PRK11192 27 IQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHT-HLDIA 105 (434)
T ss_pred HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccC-CcEEE
Confidence 5999999999999999999999999999999988765321 223489999999999999999999988776 78999
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEE
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 156 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~ 156 (356)
.+.|+.....+...+... ++|+|+||+.|+.++....+.++.+++||+||||++.+ .++...+..+....+...|+++
T Consensus 106 ~~~gg~~~~~~~~~l~~~-~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~-~~~~~~~~~i~~~~~~~~q~~~ 183 (434)
T PRK11192 106 TITGGVAYMNHAEVFSEN-QDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD-MGFAQDIETIAAETRWRKQTLL 183 (434)
T ss_pred EEECCCCHHHHHHHhcCC-CCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC-CCcHHHHHHHHHhCccccEEEE
Confidence 999998887776665544 68999999999999998888889999999999999987 6788888888888888889999
Q ss_pred EEecCcc-chHHHHHhhcCCCeEEEeccccccccccceEEEEEcC-hhHHHHHHHHHHhccCCCeEEEEecchhhHHHHH
Q 018420 157 FSATLSK-EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELN 234 (356)
Q Consensus 157 ~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~ 234 (356)
+|||++. ....+...++.+|..+....... ....+.+.+.... ...+...+..++......++||||++++.++.++
T Consensus 184 ~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~ 262 (434)
T PRK11192 184 FSATLEGDAVQDFAERLLNDPVEVEAEPSRR-ERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELA 262 (434)
T ss_pred EEeecCHHHHHHHHHHHccCCEEEEecCCcc-cccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHH
Confidence 9999975 46777777788887765544322 2334445555444 3556777777777767789999999999999999
Q ss_pred HHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCc
Q 018420 235 KLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK 314 (356)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~ 314 (356)
..|...++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.+...|+||+||+||.|..
T Consensus 263 ~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~ 342 (434)
T PRK11192 263 GWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRK 342 (434)
T ss_pred HHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEccCCChHHHHHHHHHhcccC
Q 018420 315 GLAITFVSSASDSDILNQVQARFEVDI 341 (356)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (356)
|.+++++.. .+...+..+++.+...+
T Consensus 343 g~ai~l~~~-~d~~~~~~i~~~~~~~~ 368 (434)
T PRK11192 343 GTAISLVEA-HDHLLLGKIERYIEEPL 368 (434)
T ss_pred ceEEEEecH-HHHHHHHHHHHHHhccc
Confidence 999999984 55666677776555443
No 13
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.4e-52 Score=375.13 Aligned_cols=343 Identities=38% Similarity=0.666 Sum_probs=290.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+.+++++++.+|||||||++|+++++..+.......+++|++|+++|+.|+.+.+..+.... ...+....|
T Consensus 54 ~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g 132 (401)
T PTZ00424 54 IQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYL-KVRCHACVG 132 (401)
T ss_pred HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEEC
Confidence 5999999999999999999999999999999998887655445589999999999999999888887654 677777888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.....+...+..+ .+|+|+||+.+...+......++++++||+||+|++.. .++...+..++...++..|++++|||
T Consensus 133 ~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT 210 (401)
T PTZ00424 133 GTVVRDDINKLKAG-VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLS-RGFKGQIYDVFKKLPPDVQVALFSAT 210 (401)
T ss_pred CcCHHHHHHHHcCC-CCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHh-cchHHHHHHHHhhCCCCcEEEEEEec
Confidence 87766655555554 58999999999998888888889999999999999876 56777788888888888999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcCh-hHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
++.........++.+|..+...... .........+..... ..+...+..+.......++||||++++.++.+++.|.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~ 289 (401)
T PTZ00424 211 MPNEILELTTKFMRDPKRILVKKDE-LTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHE 289 (401)
T ss_pred CCHHHHHHHHHHcCCCEEEEeCCCC-cccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHH
Confidence 9988888888888887766543322 223344444444433 33455666666666668999999999999999999999
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEE
Q 018420 240 CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 319 (356)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~ 319 (356)
.+..+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|.+..+|.||+||+||.|+.|.++.
T Consensus 290 ~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~ 369 (401)
T PTZ00424 290 RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAIN 369 (401)
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCChHHHHHHHHHhcccCcccCccc
Q 018420 320 FVSSASDSDILNQVQARFEVDIKELPEQI 348 (356)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
++.+ .+...+..+++.+...+++.+.+.
T Consensus 370 l~~~-~~~~~~~~~e~~~~~~~~~~~~~~ 397 (401)
T PTZ00424 370 FVTP-DDIEQLKEIERHYNTQIEEMPMEV 397 (401)
T ss_pred EEcH-HHHHHHHHHHHHHCCcccccCcch
Confidence 9984 567778888898888888877554
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-53 Score=333.77 Aligned_cols=342 Identities=38% Similarity=0.661 Sum_probs=315.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|++|++++++|++++..+.+|+|||.+|.+.++..+.-......+++++|+|+|+.|..+.+..+.... ++.+....|
T Consensus 53 IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacig 131 (400)
T KOG0328|consen 53 IQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYM-NVQCHACIG 131 (400)
T ss_pred HHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccc-cceEEEEec
Confidence 6999999999999999999999999999988888888877766689999999999999999998888777 899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
|.+..++.+.+..+ .+++.+||..++....+..+.-+.++++|+||++.+.+ .++...+..++..+++++|++++|||
T Consensus 132 g~n~gedikkld~G-~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~-kgfk~Qiydiyr~lp~~~Qvv~~SAT 209 (400)
T KOG0328|consen 132 GKNLGEDIKKLDYG-QHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLN-KGFKEQIYDIYRYLPPGAQVVLVSAT 209 (400)
T ss_pred CCccchhhhhhccc-ceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHH-hhHHHHHHHHHHhCCCCceEEEEecc
Confidence 99999998888866 58999999999999999999999999999999999998 59999999999999999999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhH-HHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
+|.++.++...++.+|..+.....+ ...+.+.++|......+ +.+.+.++.....-..++|||+++..+..+.+.+.+
T Consensus 210 lp~eilemt~kfmtdpvrilvkrde-ltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~ 288 (400)
T KOG0328|consen 210 LPHEILEMTEKFMTDPVRILVKRDE-LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE 288 (400)
T ss_pred CcHHHHHHHHHhcCCceeEEEecCC-CchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHh
Confidence 9999999999999999988776554 45667788887776655 888999988888778999999999999999999999
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEE
Q 018420 240 CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 319 (356)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~ 319 (356)
.+..+...||++++.+|.+++.+|++|+.+||++|++.++|+|+|.++.||+||.|.+...|++|+||.||.|+.|-++-
T Consensus 289 ~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvain 368 (400)
T KOG0328|consen 289 ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN 368 (400)
T ss_pred hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCChHHHHHHHHHhcccCcccCcc
Q 018420 320 FVSSASDSDILNQVQARFEVDIKELPEQ 347 (356)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (356)
|+. .++-+.++.+++.+...++++|-.
T Consensus 369 FVk-~~d~~~lrdieq~yst~i~emp~n 395 (400)
T KOG0328|consen 369 FVK-SDDLRILRDIEQYYSTQIDEMPMN 395 (400)
T ss_pred Eec-HHHHHHHHHHHHHHhhhcccccch
Confidence 888 578888899999999999988844
No 15
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-52 Score=346.25 Aligned_cols=341 Identities=28% Similarity=0.518 Sum_probs=305.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-----CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
+|..++|.+++++++++.++||||||++|++++++.+... +...-.+||+|||+|+.|+.+.+..|...++.+++
T Consensus 32 VQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~ 111 (567)
T KOG0345|consen 32 VQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNC 111 (567)
T ss_pred HHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccce
Confidence 5889999999999999999999999999999999877221 22246899999999999999999999888889999
Q ss_pred EEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcc--cCCccEEEEeccccccccccchhHHHHHHhhCCCCCc
Q 018420 76 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS--LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 153 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~--~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~ 153 (356)
..+.||.+...+.+.+....+.|+|+||..+...+.++... ++++.++|+|||+++.+ .+|...+..++..+|...+
T Consensus 112 ~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld-mgFe~~~n~ILs~LPKQRR 190 (567)
T KOG0345|consen 112 ELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD-MGFEASVNTILSFLPKQRR 190 (567)
T ss_pred EEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc-ccHHHHHHHHHHhcccccc
Confidence 99999999999999999888899999999999999885544 55999999999999998 8999999999999999999
Q ss_pred EEEEEecCccchHHHHHhhcCCCeEEEeccccc-cccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHH
Q 018420 154 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK-LTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 232 (356)
Q Consensus 154 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~ 232 (356)
.-++|||..+.+.++....+.+|..+.+..... ..+..+...|..+...++...+.+++.+...+++|||+++=..+++
T Consensus 191 TGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeY 270 (567)
T KOG0345|consen 191 TGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEY 270 (567)
T ss_pred cccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHH
Confidence 999999999999999999999999887765543 3556678889999999999999999999988999999999999999
Q ss_pred HHHHHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccC
Q 018420 233 LNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 310 (356)
Q Consensus 233 ~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 310 (356)
+...+... +...+.+||.+.+..|..++..|.+..-.+|+||+++++|+|+|++++||++|+|.++..|.+|+||++|
T Consensus 271 f~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR 350 (567)
T KOG0345|consen 271 FGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTAR 350 (567)
T ss_pred HHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhh
Confidence 99998876 6778889999999999999999999888899999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEccCCChHHHHHHHHHhcccCcc
Q 018420 311 FGTKGLAITFVSSASDSDILNQVQARFEVDIKE 343 (356)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (356)
.|+.|.+++|+.+ .+..+++.++-.-...++.
T Consensus 351 ~gr~G~Aivfl~p-~E~aYveFl~i~~~v~le~ 382 (567)
T KOG0345|consen 351 AGREGNAIVFLNP-REEAYVEFLRIKGKVELER 382 (567)
T ss_pred ccCccceEEEecc-cHHHHHHHHHhcCccchhh
Confidence 9999999999997 7777778777653333333
No 16
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-53 Score=336.37 Aligned_cols=348 Identities=38% Similarity=0.644 Sum_probs=326.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.+++|..+.|++++..|..|+|||.+|+++.++.+.........+++||+|+|+.|+.+.++++.+.. ++.+....|
T Consensus 111 iQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttG 189 (459)
T KOG0326|consen 111 IQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTG 189 (459)
T ss_pred ccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecC
Confidence 6999999999999999999999999999999999999988887789999999999999999999999888 899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
|.+...+.-.+... .+++|+||.+++.+...+-..+++..++|+|||+.+.+ .+|...+..+...++...|+++.|||
T Consensus 190 GT~lrDDI~Rl~~~-VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs-~~F~~~~e~li~~lP~~rQillySAT 267 (459)
T KOG0326|consen 190 GTSLRDDIMRLNQT-VHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLS-VDFQPIVEKLISFLPKERQILLYSAT 267 (459)
T ss_pred CcccccceeeecCc-eEEEEcCChhHHHHHhcccccchhceEEEechhhhhhc-hhhhhHHHHHHHhCCccceeeEEecc
Confidence 99987766655554 68999999999999999988899999999999999998 89999999999999999999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~ 240 (356)
+|..+..+...++.+|..+.. .+......+.++|..+.+..+...+..++...+-+..||||++...++-+++.+.+.
T Consensus 268 FP~tVk~Fm~~~l~kPy~INL--M~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITel 345 (459)
T KOG0326|consen 268 FPLTVKGFMDRHLKKPYEINL--MEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL 345 (459)
T ss_pred cchhHHHHHHHhccCcceeeh--hhhhhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc
Confidence 999999999999999977654 445677888999999999999999999999998899999999999999999999999
Q ss_pred CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 241 NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
|+.+..+|+.|-++.|..++.+|++|.++.||||+.+.+|+|++.+++||.||.|.++.+|.+|+||.||.|+.|.++-+
T Consensus 346 GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInL 425 (459)
T KOG0326|consen 346 GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINL 425 (459)
T ss_pred cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCChHHHHHHHHHhcccCcccCcccccCCCC
Q 018420 321 VSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 354 (356)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (356)
+.. ++...+..+++.+..+++.+|..++++.|.
T Consensus 426 ity-edrf~L~~IE~eLGtEI~pip~~iDk~lyv 458 (459)
T KOG0326|consen 426 ITY-EDRFNLYRIEQELGTEIKPIPSNIDKSLYV 458 (459)
T ss_pred Eeh-hhhhhHHHHHHHhccccccCCCcCCccccc
Confidence 995 566678899999999999999999998875
No 17
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.4e-52 Score=348.70 Aligned_cols=331 Identities=30% Similarity=0.522 Sum_probs=297.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCC----CCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP----GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~ 76 (356)
+|+..++.++.|+++++.|-||+|||++|++++.+.+.+.+ +...++|+||||+|+.|.+.+.+++....++..+.
T Consensus 108 VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~ 187 (543)
T KOG0342|consen 108 VQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVG 187 (543)
T ss_pred HHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceE
Confidence 58899999999999999999999999999999998765432 44579999999999999999999999888899999
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCC-cccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEE
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 155 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (356)
.+.||.+.....+.+..+ ..|+|+||..|+.++.+.. +..+.++++|+|||+++.+ .+|...+..+.+.++...|.+
T Consensus 188 ~viGG~~~~~e~~kl~k~-~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd-~GF~~di~~Ii~~lpk~rqt~ 265 (543)
T KOG0342|consen 188 IVIGGNNFSVEADKLVKG-CNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLD-IGFEEDVEQIIKILPKQRQTL 265 (543)
T ss_pred EEeCCccchHHHHHhhcc-ccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhh-cccHHHHHHHHHhccccceee
Confidence 999999999888888884 7999999999999998754 4466778999999999998 899999999999999999999
Q ss_pred EEEecCccchHHHHHhhcCC-CeEEEeccc-cccccccceEEEEEcChhHHHHHHHHHHhccCC-CeEEEEecchhhHHH
Q 018420 156 MFSATLSKEIRPVCKKFMQD-PMEIYVDDE-AKLTLHGLVQHYIKLSELEKNRKLNDLLDALDF-NQVVIFVKSVSRAAE 232 (356)
Q Consensus 156 ~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ivf~~~~~~~~~ 232 (356)
++|||.++.++......+.. |..+..... ...+...+.+.|+-.+.......+..+++.... .++||||++......
T Consensus 266 LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~ 345 (543)
T KOG0342|consen 266 LFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKF 345 (543)
T ss_pred EeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHH
Confidence 99999999999888776664 666655443 445566778878888888888888888887755 899999999999999
Q ss_pred HHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCC
Q 018420 233 LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 312 (356)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 312 (356)
+++.|....+++..+||+.++..|..+..+|.+.+..||+||+++++|+|+|++++|+.+++|.++.+|++|+||++|.|
T Consensus 346 ~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~g 425 (543)
T KOG0342|consen 346 HAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREG 425 (543)
T ss_pred HHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEccCCChHHHHHHH
Q 018420 313 TKGLAITFVSSASDSDILNQVQ 334 (356)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~ 334 (356)
..|.++.+..+ .+..++++++
T Consensus 426 k~G~alL~l~p-~El~Flr~LK 446 (543)
T KOG0342|consen 426 KEGKALLLLAP-WELGFLRYLK 446 (543)
T ss_pred CCceEEEEeCh-hHHHHHHHHh
Confidence 99999999995 6777788887
No 18
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-51 Score=347.18 Aligned_cols=339 Identities=29% Similarity=0.524 Sum_probs=308.1
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC----CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~ 76 (356)
+|+++++..+.|++++-.|-||||||++|+.++++.+... ..+.-++||+|||+|+.|+++.+.+....- ++..+
T Consensus 95 iQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h-~fSaG 173 (758)
T KOG0343|consen 95 IQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHH-DFSAG 173 (758)
T ss_pred HHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhcc-ccccc
Confidence 5899999999999999999999999999999999876432 244568999999999999999999987776 89999
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc-CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEE
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 155 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (356)
.+.||.+.......+..- +|+||||.+++.+++. ..++-+++.++|+|||+++.+ .+|...+..+...+++..|.+
T Consensus 174 LiiGG~~~k~E~eRi~~m--NILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LD-MGFk~tL~~Ii~~lP~~RQTL 250 (758)
T KOG0343|consen 174 LIIGGKDVKFELERISQM--NILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLD-MGFKKTLNAIIENLPKKRQTL 250 (758)
T ss_pred eeecCchhHHHHHhhhcC--CeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHH-HhHHHHHHHHHHhCChhheee
Confidence 999999988887777664 8999999999999984 556678889999999999998 899999999999999999999
Q ss_pred EEEecCccchHHHHHhhcCCCeEEEecccc-ccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHH
Q 018420 156 MFSATLSKEIRPVCKKFMQDPMEIYVDDEA-KLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELN 234 (356)
Q Consensus 156 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~ 234 (356)
++|||....+..+++--+.+|.++.+.... ...+..+.+.|+.++...+.+.+-.+++.+...+.|||+++-+++..++
T Consensus 251 LFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~ 330 (758)
T KOG0343|consen 251 LFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLY 330 (758)
T ss_pred eeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHH
Confidence 999999999999999999999998877444 6677888999999999999999999999999999999999999999999
Q ss_pred HHHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCC
Q 018420 235 KLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 312 (356)
Q Consensus 235 ~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 312 (356)
+.+.+. |++...+||.|++..|.+++..|....--||+||+++++|+|+|.++|||.+|+|.++++|++|+||+.|.+
T Consensus 331 e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~ 410 (758)
T KOG0343|consen 331 EAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYK 410 (758)
T ss_pred HHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhccc
Confidence 999876 899999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEccCCChHHHHHHHHHhcccCccc
Q 018420 313 TKGLAITFVSSASDSDILNQVQARFEVDIKEL 344 (356)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (356)
..|.++++..+.+++.++..+++.. +..+++
T Consensus 411 ~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i 441 (758)
T KOG0343|consen 411 ERGESLLMLTPSEEEAMLKKLQKKK-IPIKEI 441 (758)
T ss_pred CCCceEEEEcchhHHHHHHHHHHcC-CCHHhh
Confidence 9999999999988788888888763 444443
No 19
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-50 Score=342.57 Aligned_cols=331 Identities=34% Similarity=0.610 Sum_probs=295.2
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCC---eeEEEEcCchHHHHHHHHHHHHHhccCCCceEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQ---VTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 77 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~---~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~ 77 (356)
+|..++|..+-|++++-+|.||||||.+|++++++.+...+.. -+|+++||||+|+-|+....+++.... ++.++.
T Consensus 207 IQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L 285 (691)
T KOG0338|consen 207 IQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT-DITVGL 285 (691)
T ss_pred hhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc-cceeee
Confidence 6999999999999999999999999999999999988776633 489999999999999988888777665 799999
Q ss_pred EEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC-CcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEE
Q 018420 78 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 156 (356)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~ 156 (356)
..||.+...+...+++. ++|+|+||..|..++.+. .+.++++.++|+|||++++. .+|...+.++...++.+.|.++
T Consensus 286 ~vGGL~lk~QE~~LRs~-PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLe-egFademnEii~lcpk~RQTmL 363 (691)
T KOG0338|consen 286 AVGGLDLKAQEAVLRSR-PDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLE-EGFADEMNEIIRLCPKNRQTML 363 (691)
T ss_pred eecCccHHHHHHHHhhC-CCEEEecchhHHHHhccCCCccccceeEEEechHHHHHH-HHHHHHHHHHHHhcccccccee
Confidence 99999999998888877 699999999999999874 46789999999999999998 8999999999999999999999
Q ss_pred EEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEc---ChhHHHHHHHHHHhccCCCeEEEEecchhhHHHH
Q 018420 157 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL---SELEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 233 (356)
Q Consensus 157 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~ 233 (356)
+|||+.+.+.+++.-.+.+|+.++++........ +.+.|+.. .+..+...+..++...-...+|||+.+.++|..+
T Consensus 364 FSATMteeVkdL~slSL~kPvrifvd~~~~~a~~-LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl 442 (691)
T KOG0338|consen 364 FSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPK-LTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRL 442 (691)
T ss_pred ehhhhHHHHHHHHHhhcCCCeEEEeCCccccchh-hhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHH
Confidence 9999999999999999999999998877654433 33444332 2334556666777766668999999999999999
Q ss_pred HHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCC
Q 018420 234 NKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 313 (356)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 313 (356)
.-.|.-.|.++..+||.+++.+|.+.+..|+..+++|||||+++++|+|++.+.+||+|..|.+...|++|+||+.|.|+
T Consensus 443 ~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGR 522 (691)
T KOG0338|consen 443 RILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGR 522 (691)
T ss_pred HHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEccCCChHHHHHHHHH
Q 018420 314 KGLAITFVSSASDSDILNQVQAR 336 (356)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~ 336 (356)
.|.++.++- ..+..+++.+.+.
T Consensus 523 aGrsVtlvg-E~dRkllK~iik~ 544 (691)
T KOG0338|consen 523 AGRSVTLVG-ESDRKLLKEIIKS 544 (691)
T ss_pred CcceEEEec-cccHHHHHHHHhh
Confidence 999999998 4577777777665
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-50 Score=342.12 Aligned_cols=347 Identities=33% Similarity=0.533 Sum_probs=310.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC----------CCCeeEEEEcCchHHHHHHHHHHHHHhccC
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----------PGQVTALVLCHTRELAYQICHEFERFSTYL 70 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----------~~~~~vlii~P~~~l~~q~~~~~~~~~~~~ 70 (356)
+|+.+++.+..|++++++|+||+|||.+|+++++..+... +..+.++|++||++|+.|.+.+.+++....
T Consensus 100 vQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s 179 (482)
T KOG0335|consen 100 VQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS 179 (482)
T ss_pred ceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc
Confidence 6999999999999999999999999999999999765443 134789999999999999999999998776
Q ss_pred CCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCC
Q 018420 71 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 150 (356)
Q Consensus 71 ~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~ 150 (356)
+++.....|+.+...+...+..+ .+|+|+||..+..++..+.+.+++++++|+|||+.+.+..+|...+.++......
T Consensus 180 -~~~~~~~ygg~~~~~q~~~~~~g-cdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~ 257 (482)
T KOG0335|consen 180 -GMKSVVVYGGTDLGAQLRFIKRG-CDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGM 257 (482)
T ss_pred -cceeeeeeCCcchhhhhhhhccC-ccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCC
Confidence 88999999998888887777777 5999999999999999999999999999999999999988999999999877653
Q ss_pred ----CCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccC----CC----
Q 018420 151 ----DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALD----FN---- 218 (356)
Q Consensus 151 ----~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---- 218 (356)
..|.+++|||.+..+...+..++.+..............+++.+....+.+..+...+.+++.... .+
T Consensus 258 ~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~ 337 (482)
T KOG0335|consen 258 PPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKW 337 (482)
T ss_pred CCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCccc
Confidence 679999999999999888888777754444444455666788888999999888888888887543 33
Q ss_pred -eEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCC
Q 018420 219 -QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDS 297 (356)
Q Consensus 219 -~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s 297 (356)
+++|||.+++.+..++..|...+.+..-+||..++.+|.+.++.|++|.+.+||||+++++|+|+|++.+||.|+.|.+
T Consensus 338 e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d 417 (482)
T KOG0335|consen 338 EKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPAD 417 (482)
T ss_pred ceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcccCccccc
Q 018420 298 ADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 350 (356)
Q Consensus 298 ~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (356)
..+|++|+||+||.|+.|.++.|++ ..+....+.+-+.+....+++|+-+..
T Consensus 418 ~d~YvHRIGRTGR~Gn~G~atsf~n-~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 418 IDDYVHRIGRTGRVGNGGRATSFFN-EKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred hhhHHHhccccccCCCCceeEEEec-cccchhHHHHHHHHHHhcccCcHHHHh
Confidence 9999999999999999999999999 678888888888888888888876643
No 21
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.2e-49 Score=337.12 Aligned_cols=345 Identities=34% Similarity=0.529 Sum_probs=304.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcC---------CCCCCeeEEEEcCchHHHHHHHHHHHHHhccCC
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE---------PNPGQVTALVLCHTRELAYQICHEFERFSTYLP 71 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~---------~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~ 71 (356)
+|.+|+|..++.+++|..+.||||||.+|+++++..+. ....++..+++.|+++|++|+.++-.+|...+
T Consensus 271 IqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l- 349 (673)
T KOG0333|consen 271 IQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL- 349 (673)
T ss_pred HHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc-
Confidence 68999999999999999999999999999877764332 23345689999999999999999999999888
Q ss_pred CceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCC
Q 018420 72 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 151 (356)
Q Consensus 72 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 151 (356)
++++..+.||....++--.+..+ +.|+|+||..+...+.+..+.++...+||+|||+++.+ .+|...+..++...+..
T Consensus 350 g~r~vsvigg~s~EEq~fqls~g-ceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiD-mgfE~dv~~iL~~mPss 427 (673)
T KOG0333|consen 350 GIRTVSVIGGLSFEEQGFQLSMG-CEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMID-MGFEPDVQKILEQMPSS 427 (673)
T ss_pred cceEEEEecccchhhhhhhhhcc-ceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhc-ccccHHHHHHHHhCCcc
Confidence 89999999999998887777777 49999999999999999888899999999999999998 88888888887665421
Q ss_pred -------------------------CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHH
Q 018420 152 -------------------------KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR 206 (356)
Q Consensus 152 -------------------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (356)
.|.+++|||+++.+..+++.++.+|..+.+..... ....+.+.+...++.++..
T Consensus 428 n~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk-~~~rveQ~v~m~~ed~k~k 506 (673)
T KOG0333|consen 428 NAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGK-PTPRVEQKVEMVSEDEKRK 506 (673)
T ss_pred ccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCC-CccchheEEEEecchHHHH
Confidence 47899999999999999999999999988876654 3445567777888888899
Q ss_pred HHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCC
Q 018420 207 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 286 (356)
Q Consensus 207 ~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~ 286 (356)
.+..++......++|||+|+++.|..+++.|...|+++..+||+-++++|...+..|+.|..+|||||+++++|+|+|++
T Consensus 507 kL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnV 586 (673)
T KOG0333|consen 507 KLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNV 586 (673)
T ss_pred HHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCcc
Confidence 99999998877899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcccCcccc
Q 018420 287 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 349 (356)
Q Consensus 287 ~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (356)
++||+|+.+.|..+|++|+||+||.|+.|.++.|+.+.+.+-+.+..+...+......|.++.
T Consensus 587 SlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 587 SLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred ceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhc
Confidence 999999999999999999999999999999999999888776666666666555555665553
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-49 Score=326.34 Aligned_cols=343 Identities=31% Similarity=0.520 Sum_probs=311.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC------CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
+|.||||.+++|++++-+|-||+|||++++++.+.++... ..++.++++.|+++|+.|+.-+..++.-+ ++.
T Consensus 246 IqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyn--g~k 323 (629)
T KOG0336|consen 246 IQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYN--GLK 323 (629)
T ss_pred chhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhc--Ccc
Confidence 6999999999999999999999999999999888765443 34568999999999999998888776544 888
Q ss_pred EEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcE
Q 018420 75 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 154 (356)
Q Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (356)
..++.|+.+..++.+.+..+ .+|+++||..|..+...+-+++.++.++|+|||+++++ .+|...+.+++-...++.|.
T Consensus 324 svc~ygggnR~eqie~lkrg-veiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLD-MgFEpqIrkilldiRPDRqt 401 (629)
T KOG0336|consen 324 SVCVYGGGNRNEQIEDLKRG-VEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLD-MGFEPQIRKILLDIRPDRQT 401 (629)
T ss_pred eEEEecCCCchhHHHHHhcC-ceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhc-ccccHHHHHHhhhcCCccee
Confidence 89999999999999988887 69999999999999999999999999999999999998 89999999999999999999
Q ss_pred EEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc-CCCeEEEEecchhhHHHH
Q 018420 155 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAEL 233 (356)
Q Consensus 155 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivf~~~~~~~~~~ 233 (356)
++.|||.|+.+..+...++.+|..+++............+.++...+.++...+..+..+. +..++||||.....|..+
T Consensus 402 vmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~L 481 (629)
T KOG0336|consen 402 VMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHL 481 (629)
T ss_pred eeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhc
Confidence 9999999999999999999999999998888877888888887777778888777777776 567999999999999998
Q ss_pred HHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCC
Q 018420 234 NKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 313 (356)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 313 (356)
...+.-.|+..-.+||.-.+.+|...++.|++|+++|||+|+.+++|+|+|++.||+.||.|.+..+|++|+||+||.|+
T Consensus 482 SSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr 561 (629)
T KOG0336|consen 482 SSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGR 561 (629)
T ss_pred cchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCC
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEccCCChHHHHHHHHHhcccCcccCccc
Q 018420 314 KGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 348 (356)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
.|.++.++. .++-...+.+.+.++..-+++|+++
T Consensus 562 ~G~sis~lt-~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 562 TGTSISFLT-RNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred CcceEEEEe-hhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 999999998 4566667777777788888888776
No 23
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-49 Score=316.84 Aligned_cols=344 Identities=32% Similarity=0.541 Sum_probs=303.8
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|..|+|.++.|++++=+|-||||||.+|.+++++.+.+.+.+...+++.||++|+-|.+++|..+.... ++++..+.|
T Consensus 33 iQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l-~lK~~vivG 111 (442)
T KOG0340|consen 33 IQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVG 111 (442)
T ss_pred hHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccc-cceEEEEEc
Confidence 5899999999999999999999999999999999999999988899999999999999999998887776 899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcC----CcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEE
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDK----DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 156 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~----~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~ 156 (356)
|...-.+...+... ++++++||+++..++... .+.++++.++|+|||+.+.. ..|...+..+...++...|.++
T Consensus 112 G~d~i~qa~~L~~r-PHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~-~~f~d~L~~i~e~lP~~RQtLl 189 (442)
T KOG0340|consen 112 GTDMIMQAAILSDR-PHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLA-GCFPDILEGIEECLPKPRQTLL 189 (442)
T ss_pred cHHHhhhhhhcccC-CCeEecCccccccccccCCccchhhhhceeeEEecchhhhhc-cchhhHHhhhhccCCCccceEE
Confidence 98876666555555 699999999998877654 34478899999999999988 7889999999999998899999
Q ss_pred EEecCccchHHHHHhhcCCCeEEEecc-ccccccccceEEEEEcChhHHHHHHHHHHhcc---CCCeEEEEecchhhHHH
Q 018420 157 FSATLSKEIRPVCKKFMQDPMEIYVDD-EAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL---DFNQVVIFVKSVSRAAE 232 (356)
Q Consensus 157 ~SaT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivf~~~~~~~~~ 232 (356)
+|||+.+.+......-...+....... ........+.+.|+.++..-+...+..+++.. ..+.++||+++-..++.
T Consensus 190 fSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~ 269 (442)
T KOG0340|consen 190 FSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQL 269 (442)
T ss_pred EEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHH
Confidence 999999887766555444433233222 34456677888899999888888777777655 35789999999999999
Q ss_pred HHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCC
Q 018420 233 LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 312 (356)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 312 (356)
++..|+..++.+..+|+.+++.+|...+..|+++..+|||||+++++|+|+|.++.|++++.|.++.+|++|+||..|.|
T Consensus 270 l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAG 349 (442)
T KOG0340|consen 270 LSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAG 349 (442)
T ss_pred HHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEccCCChHHHHHHHHHhcccCcccCccc
Q 018420 313 TKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 348 (356)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
+.|.++.++. ..|-+.++.+++..+.++.+++...
T Consensus 350 R~G~aiSivt-~rDv~l~~aiE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 350 RKGMAISIVT-QRDVELLQAIEEEIGKKLTEYNKVQ 384 (442)
T ss_pred CCcceEEEec-hhhHHHHHHHHHHHhcccccccccc
Confidence 9999999999 7889999999999999999888544
No 24
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-48 Score=332.08 Aligned_cols=334 Identities=29% Similarity=0.497 Sum_probs=277.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC------CCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP------NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~------~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
+|++++|.+++|++++|.++||||||++|++++...+.. +..++-.++++|||+|+.|.++.+.++.+.+-.+.
T Consensus 163 VQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIV 242 (708)
T KOG0348|consen 163 VQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIV 242 (708)
T ss_pred HhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEe
Confidence 699999999999999999999999999999999876432 44566899999999999999999999998887778
Q ss_pred EEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC-CcccCCccEEEEeccccccccccchhHHHHHHhhCCC---
Q 018420 75 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH--- 150 (356)
Q Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~--- 150 (356)
.+.+.||+.....+..++.+ ..|+|+||.+++.++.+. .+.++.+++||+||++++.+ .+|...+..+++....
T Consensus 243 Pg~lmGGEkkKSEKARLRKG-iNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlle-LGfekdit~Il~~v~~~~~ 320 (708)
T KOG0348|consen 243 PGVLMGGEKKKSEKARLRKG-INILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLE-LGFEKDITQILKAVHSIQN 320 (708)
T ss_pred eceeecccccccHHHHHhcC-ceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHh-ccchhhHHHHHHHHhhccc
Confidence 88999999999888888888 589999999999988864 46688899999999999998 8999888888766521
Q ss_pred ----------CCcEEEEEecCccchHHHHHhhcCCCeEEEecccc------------------------ccccccceEEE
Q 018420 151 ----------DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA------------------------KLTLHGLVQHY 196 (356)
Q Consensus 151 ----------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~ 196 (356)
..|.+++|||+.+.+..+...-+.+|..+..+... ...+.++.+.|
T Consensus 321 ~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry 400 (708)
T KOG0348|consen 321 AECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRY 400 (708)
T ss_pred hhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhce
Confidence 24789999999999999999999999888722211 11223344555
Q ss_pred EEcChhHHHHHHHHHH----hccCCCeEEEEecchhhHHHHHHHHHhC----------------------CCCeEEEecC
Q 018420 197 IKLSELEKNRKLNDLL----DALDFNQVVIFVKSVSRAAELNKLLVEC----------------------NFPSICIHSG 250 (356)
Q Consensus 197 ~~~~~~~~~~~~~~~~----~~~~~~~~ivf~~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~ 250 (356)
..++..-..-.+..++ +.....++|||+.+.+.++.=+..+... +.+...+||+
T Consensus 401 ~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs 480 (708)
T KOG0348|consen 401 TVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS 480 (708)
T ss_pred EecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc
Confidence 5555544444444444 3335568999999998888777666541 3457779999
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHH
Q 018420 251 MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDIL 330 (356)
Q Consensus 251 ~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~ 330 (356)
|++.+|..++..|...+-.||+||+++++|+|+|++.+||.|++|.+.++|++|+||+.|.|+.|.++.|..+. +.+++
T Consensus 481 m~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~-Eaey~ 559 (708)
T KOG0348|consen 481 MEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPS-EAEYV 559 (708)
T ss_pred hhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEeccc-HHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999975 45588
Q ss_pred HHHHHHh
Q 018420 331 NQVQARF 337 (356)
Q Consensus 331 ~~~~~~~ 337 (356)
+++++.-
T Consensus 560 ~~l~~~~ 566 (708)
T KOG0348|consen 560 NYLKKHH 566 (708)
T ss_pred HHHHhhc
Confidence 8888753
No 25
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-48 Score=322.32 Aligned_cols=325 Identities=29% Similarity=0.460 Sum_probs=285.8
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcC------CCCCCeeEEEEcCchHHHHHHHHHHHHHhccCC-Cc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE------PNPGQVTALVLCHTRELAYQICHEFERFSTYLP-DI 73 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~------~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~-~~ 73 (356)
+|+.|+|.+++|++++..|.||||||.+|++++++.+. .+..++..+|++||++|++|....+.++....+ .+
T Consensus 45 IQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~l 124 (569)
T KOG0346|consen 45 IQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDL 124 (569)
T ss_pred hhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhh
Confidence 69999999999999999999999999999999987543 334567899999999999999998888776653 44
Q ss_pred eEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCC-cccCCccEEEEeccccccccccchhHHHHHHhhCCCCC
Q 018420 74 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 152 (356)
Q Consensus 74 ~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 152 (356)
++.-+.+..+..... .+-...++|+|+||..++.++..+- ..+..++++|+|||+.+.+ .++...+..+...+++..
T Consensus 125 r~~nl~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLlls-fGYeedlk~l~~~LPr~~ 202 (569)
T KOG0346|consen 125 RAINLASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLS-FGYEEDLKKLRSHLPRIY 202 (569)
T ss_pred hhhhhhcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhh-cccHHHHHHHHHhCCchh
Confidence 555555444433333 3333447999999999999888766 6688899999999999998 899999999999999999
Q ss_pred cEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc-CCCeEEEEecchhhHH
Q 018420 153 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAA 231 (356)
Q Consensus 153 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivf~~~~~~~~ 231 (356)
|.++||||+.+++..+-+.++.+|..+...+.+.....++.++++.+.+.++.-.+..+++-. -.++.|||+|+++.+.
T Consensus 203 Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~Y 282 (569)
T KOG0346|consen 203 QCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCY 282 (569)
T ss_pred hheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhH
Confidence 999999999999999999999999999888888888888999999999888888888887643 5589999999999999
Q ss_pred HHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-----------------------------------c
Q 018420 232 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-----------------------------------L 276 (356)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-----------------------------------~ 276 (356)
.+.-.|...|++...++|.++...|-.++.+|+.|-.+++|||+ -
T Consensus 283 rLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~G 362 (569)
T KOG0346|consen 283 RLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESG 362 (569)
T ss_pred HHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhc
Confidence 99999999999999999999999999999999999999999998 2
Q ss_pred cccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCCh
Q 018420 277 VGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 327 (356)
Q Consensus 277 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 327 (356)
+++|+|+.++++|++||.|.+...|++|+||++|.+++|.++.|+.+.+..
T Consensus 363 VsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 363 VSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred hhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 468999999999999999999999999999999999999999999986555
No 26
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.1e-47 Score=360.40 Aligned_cols=334 Identities=18% Similarity=0.252 Sum_probs=251.8
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+++|+++++.+|||||||++|+++++..+...+. .+++|++|+++|+.|+.++++++. ..++++..+.|
T Consensus 40 ~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~-~~aL~l~PtraLa~q~~~~l~~l~--~~~i~v~~~~G 116 (742)
T TIGR03817 40 HQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPR-ATALYLAPTKALAADQLRAVRELT--LRGVRPATYDG 116 (742)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCC-cEEEEEcChHHHHHHHHHHHHHhc--cCCeEEEEEeC
Confidence 499999999999999999999999999999999988865443 489999999999999999999886 23788888888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhc----CCcccCCccEEEEeccccccccccchhH-------HHHHHhhCC
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARD----KDLSLKNVRHFILDECDKMLESLDMRRD-------VQEIFKMTP 149 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~----~~~~~~~~~~viiDE~H~~~~~~~~~~~-------~~~~~~~~~ 149 (356)
+.... +...+... ++|+++||+++...+.. +...++++++||+||+|.+.+ .+... +.++....+
T Consensus 117 dt~~~-~r~~i~~~-~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g--~fg~~~~~il~rL~ri~~~~g 192 (742)
T TIGR03817 117 DTPTE-ERRWAREH-ARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG--VFGSHVALVLRRLRRLCARYG 192 (742)
T ss_pred CCCHH-HHHHHhcC-CCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC--ccHHHHHHHHHHHHHHHHhcC
Confidence 77644 33444444 69999999998643221 122378899999999999865 23333 223333445
Q ss_pred CCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEc----------------ChhHHHHHHHHHHh
Q 018420 150 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL----------------SELEKNRKLNDLLD 213 (356)
Q Consensus 150 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 213 (356)
..+|++++|||+++.. .....+++.|..+........... ...+... ....+...+..++.
T Consensus 193 ~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~ 269 (742)
T TIGR03817 193 ASPVFVLASATTADPA-AAASRLIGAPVVAVTEDGSPRGAR--TVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA 269 (742)
T ss_pred CCCEEEEEecCCCCHH-HHHHHHcCCCeEEECCCCCCcCce--EEEEecCCccccccccccccccchHHHHHHHHHHHHH
Confidence 6789999999999874 456777777755432222111111 1111110 01123344555554
Q ss_pred ccCCCeEEEEecchhhHHHHHHHHHhC--------CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCC
Q 018420 214 ALDFNQVVIFVKSVSRAAELNKLLVEC--------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 285 (356)
Q Consensus 214 ~~~~~~~ivf~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~ 285 (356)
. +.++||||++++.++.++..|.+. +.++..+||++++.+|+++++.|++|++++||||+++++|+|+|+
T Consensus 270 ~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~ 347 (742)
T TIGR03817 270 E--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISG 347 (742)
T ss_pred C--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCccc
Confidence 3 479999999999999999988764 567788999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccC-CChHHHHHHHHHhcccCcccCc
Q 018420 286 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFEVDIKELPE 346 (356)
Q Consensus 286 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 346 (356)
+++||+++.|.+..+|+||+||+||.|+.|.++++...+ .+..++...++.++...++...
T Consensus 348 vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~~ 409 (742)
T TIGR03817 348 LDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATVF 409 (742)
T ss_pred ccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCcccee
Confidence 999999999999999999999999999999998887633 3344455555666665555433
No 27
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5e-47 Score=342.71 Aligned_cols=308 Identities=21% Similarity=0.261 Sum_probs=235.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+++++++++.+|||+|||++|+++++... ..++|++|+++|+.|+.+.+..+ ++.+..+.+
T Consensus 15 ~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~------~~~lVi~P~~~L~~dq~~~l~~~-----gi~~~~l~~ 83 (470)
T TIGR00614 15 VQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSD------GITLVISPLISLMEDQVLQLKAS-----GIPATFLNS 83 (470)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcC------CcEEEEecHHHHHHHHHHHHHHc-----CCcEEEEeC
Confidence 5999999999999999999999999999999987531 16899999999999998888754 677777777
Q ss_pred CcchHHhH---HHHhcCCCcEEEechHHHHHHH-hcCCc-ccCCccEEEEecccccccc-ccchhHHHHH---HhhCCCC
Q 018420 81 GVNIKIHK---DLLKNECPQIVVGTPGRILALA-RDKDL-SLKNVRHFILDECDKMLES-LDMRRDVQEI---FKMTPHD 151 (356)
Q Consensus 81 ~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~-~~~~~-~~~~~~~viiDE~H~~~~~-~~~~~~~~~~---~~~~~~~ 151 (356)
+....... ..+..+..+|+++||+.+.... ....+ ...++++|||||||+++.| ++++..+..+ ...+ ++
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~ 162 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF-PN 162 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHc-CC
Confidence 66544332 2234556799999999875322 11111 4578899999999999765 4466555443 3333 46
Q ss_pred CcEEEEEecCccchHHHHHhhcC--CCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHh-ccCCCeEEEEecchh
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQ--DPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD-ALDFNQVVIFVKSVS 228 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ivf~~~~~ 228 (356)
.+++++|||+++.....+...+. +|..... ... ..++...... ........+...+. ...+..+||||++++
T Consensus 163 ~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~~---r~nl~~~v~~-~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~ 237 (470)
T TIGR00614 163 VPIMALTATASPSVREDILRQLNLKNPQIFCT-SFD---RPNLYYEVRR-KTPKILEDLLRFIRKEFKGKSGIIYCPSRK 237 (470)
T ss_pred CceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CCC---CCCcEEEEEe-CCccHHHHHHHHHHHhcCCCceEEEECcHH
Confidence 78999999999876555544432 3333222 111 1111111111 11123334444444 445567799999999
Q ss_pred hHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccc
Q 018420 229 RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRA 308 (356)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~ 308 (356)
.++.+++.|.+.++.+..+|+++++.+|.++++.|++|+++|||||+++++|+|+|++++||++++|.|...|+|++||+
T Consensus 238 ~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRa 317 (470)
T TIGR00614 238 KSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRA 317 (470)
T ss_pred HHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEEEEccCC
Q 018420 309 GRFGTKGLAITFVSSAS 325 (356)
Q Consensus 309 ~R~~~~~~~~~~~~~~~ 325 (356)
||.|.++.+++++.+.+
T Consensus 318 GR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 318 GRDGLPSECHLFYAPAD 334 (470)
T ss_pred CCCCCCceEEEEechhH
Confidence 99999999999998643
No 28
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.8e-46 Score=348.87 Aligned_cols=309 Identities=20% Similarity=0.260 Sum_probs=236.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.+++++++.|+++++.+|||+|||++|+++++... ..++||+|+++|+.++...+... ++....+.+
T Consensus 464 ~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~------GiTLVISPLiSLmqDQV~~L~~~-----GI~Aa~L~s 532 (1195)
T PLN03137 464 NQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICP------GITLVISPLVSLIQDQIMNLLQA-----NIPAASLSA 532 (1195)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcC------CcEEEEeCHHHHHHHHHHHHHhC-----CCeEEEEEC
Confidence 4899999999999999999999999999999998642 16999999999998766655542 788888888
Q ss_pred CcchHHhHHHHhc-----CCCcEEEechHHHHH---HHhc--CCcccCCccEEEEecccccccc-ccchhHHHHH--Hhh
Q 018420 81 GVNIKIHKDLLKN-----ECPQIVVGTPGRILA---LARD--KDLSLKNVRHFILDECDKMLES-LDMRRDVQEI--FKM 147 (356)
Q Consensus 81 ~~~~~~~~~~~~~-----~~~~i~v~T~~~l~~---~~~~--~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~~--~~~ 147 (356)
+.........+.. +..+|+++||+++.. +... .......+.+|||||||+++.| ++|+..+..+ +..
T Consensus 533 ~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~ 612 (1195)
T PLN03137 533 GMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQ 612 (1195)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHH
Confidence 8776665544432 557999999999752 1111 1111245788999999999876 5677766553 222
Q ss_pred CCCCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChh-HHHHHHHHHHhc-cCCCeEEEEec
Q 018420 148 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLLDA-LDFNQVVIFVK 225 (356)
Q Consensus 148 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ivf~~ 225 (356)
.-+..+++++|||++......+...++.......... ....++ .|...... .....+..++.. .....+||||.
T Consensus 613 ~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S--f~RpNL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 613 KFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS--FNRPNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred hCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc--cCccce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeC
Confidence 2346789999999998877665555443222221111 111111 22212221 122344455543 34568999999
Q ss_pred chhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhcc
Q 018420 226 SVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRV 305 (356)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~ 305 (356)
+++.++.++..|...|+++..+||+|++.+|..+++.|..|+++|||||.++++|||+|++++||+++.|.|...|+|++
T Consensus 689 SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQri 768 (1195)
T PLN03137 689 SRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQEC 768 (1195)
T ss_pred chhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEEEEccC
Q 018420 306 GRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 306 GR~~R~~~~~~~~~~~~~~ 324 (356)
||+||.|.++.|+++++..
T Consensus 769 GRAGRDG~~g~cILlys~~ 787 (1195)
T PLN03137 769 GRAGRDGQRSSCVLYYSYS 787 (1195)
T ss_pred cccCCCCCCceEEEEecHH
Confidence 9999999999999999853
No 29
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=9.6e-46 Score=342.61 Aligned_cols=307 Identities=19% Similarity=0.270 Sum_probs=238.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
.|.++++.+++++++++.+|||+|||++|+++++.... .+++++|+++|+.|+.+.++.. ++....+.+
T Consensus 29 ~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g------~tlVisPl~sL~~dqv~~l~~~-----gi~~~~~~s 97 (607)
T PRK11057 29 GQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDG------LTLVVSPLISLMKDQVDQLLAN-----GVAAACLNS 97 (607)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCC------CEEEEecHHHHHHHHHHHHHHc-----CCcEEEEcC
Confidence 48999999999999999999999999999998885421 6899999999999999888764 667777777
Q ss_pred CcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc-ccchhHHHHH---HhhCCCCCc
Q 018420 81 GVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEI---FKMTPHDKQ 153 (356)
Q Consensus 81 ~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~~---~~~~~~~~~ 153 (356)
+........ ....+..+++++||+.+........+...++++|||||||+++.| ++++..+..+ ...+ ++.+
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~ 176 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLP 176 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCc
Confidence 665544332 234456789999999986432222233457899999999999875 4566554433 3333 4678
Q ss_pred EEEEEecCccchHHHHHhhc--CCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHH
Q 018420 154 VMMFSATLSKEIRPVCKKFM--QDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAA 231 (356)
Q Consensus 154 ~i~~SaT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~ 231 (356)
++++|||++......+...+ .+|... ...... .++ .+...........+...+....++++||||++++.++
T Consensus 177 ~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r---~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e 250 (607)
T PRK11057 177 FMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDR---PNI--RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVE 250 (607)
T ss_pred EEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCC---Ccc--eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 99999999987655444433 333322 222111 111 1211222223345556666667789999999999999
Q ss_pred HHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCC
Q 018420 232 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 311 (356)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 311 (356)
.++..|.+.++.+..+|+++++.+|..+++.|+.|+++|||||+++++|+|+|++++||+++.|.|..+|+|++||+||.
T Consensus 251 ~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~ 330 (607)
T PRK11057 251 DTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (607)
T ss_pred HHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEccCC
Q 018420 312 GTKGLAITFVSSAS 325 (356)
Q Consensus 312 ~~~~~~~~~~~~~~ 325 (356)
|.++.+++++++.+
T Consensus 331 G~~~~~ill~~~~d 344 (607)
T PRK11057 331 GLPAEAMLFYDPAD 344 (607)
T ss_pred CCCceEEEEeCHHH
Confidence 99999999998643
No 30
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.5e-45 Score=342.59 Aligned_cols=307 Identities=23% Similarity=0.298 Sum_probs=242.8
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+++|+++++.+|||+|||++|+++++... + .++|++|+++|+.|+.+.++.+ ++.+..+++
T Consensus 17 ~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~-----g-~~lVisPl~sL~~dq~~~l~~~-----gi~~~~~~s 85 (591)
T TIGR01389 17 GQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLK-----G-LTVVISPLISLMKDQVDQLRAA-----GVAAAYLNS 85 (591)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcC-----C-cEEEEcCCHHHHHHHHHHHHHc-----CCcEEEEeC
Confidence 4999999999999999999999999999999887532 1 6899999999999999888774 678888888
Q ss_pred CcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc-ccchhHHHHHH---hhCCCCCc
Q 018420 81 GVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEIF---KMTPHDKQ 153 (356)
Q Consensus 81 ~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~~~---~~~~~~~~ 153 (356)
+........ .+..+..+|+++||+.+............++++|||||||+++.| ++++..+..+. ...+ ..+
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~~ 164 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QVP 164 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC-CCC
Confidence 776654443 344566799999999986543333344568899999999999865 45666555443 3343 445
Q ss_pred EEEEEecCccchHHHHHhhcCCCe-EEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHH
Q 018420 154 VMMFSATLSKEIRPVCKKFMQDPM-EIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 232 (356)
Q Consensus 154 ~i~~SaT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~ 232 (356)
++++|||++......+...+..+. ....... ...++ .+.......+...+...+....+.++||||++++.++.
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~nl--~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~ 239 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSF---DRPNL--RFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEE 239 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC---CCCCc--EEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 999999999887766665554221 1222111 11111 12222223345566666666667899999999999999
Q ss_pred HHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCC
Q 018420 233 LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 312 (356)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 312 (356)
+++.|...++.+..+|+++++.+|..+++.|..|+++|||||+++++|+|+|++++||+++.|.|...|.|++||+||.|
T Consensus 240 la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G 319 (591)
T TIGR01389 240 LAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDG 319 (591)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEccC
Q 018420 313 TKGLAITFVSSA 324 (356)
Q Consensus 313 ~~~~~~~~~~~~ 324 (356)
+++.+++++++.
T Consensus 320 ~~~~~il~~~~~ 331 (591)
T TIGR01389 320 LPAEAILLYSPA 331 (591)
T ss_pred CCceEEEecCHH
Confidence 999999888754
No 31
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.1e-45 Score=320.26 Aligned_cols=323 Identities=34% Similarity=0.571 Sum_probs=294.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|..|+|.++.+.++||.+..|+|||++|...+++.+..+...+..+|++|||+++-|+.+.+...+..+.|+++..+.|
T Consensus 51 iQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIG 130 (980)
T KOG4284|consen 51 IQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIG 130 (980)
T ss_pred hhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEec
Confidence 68899999999999999999999999999999999998887777899999999999999999999998888999999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
|.....+...++.. +|+|+||.++..++....++.++++++|+|||+.+.....|...+..++..++...|++++|||
T Consensus 131 GT~~~~d~~rlk~~--rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SAT 208 (980)
T KOG4284|consen 131 GTAHKLDLIRLKQT--RIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSAT 208 (980)
T ss_pred Cchhhhhhhhhhhc--eEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEecc
Confidence 99988888777765 8999999999999999999999999999999999988778999999999999999999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEc-Ch-------hHHHHHHHHHHhccCCCeEEEEecchhhHHH
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SE-------LEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 232 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~ 232 (356)
.+.++...+..++.+|..+....... ..-.+.+++... .. ..+...+-.++..++...+||||+....|+-
T Consensus 209 Yp~nLdn~Lsk~mrdp~lVr~n~~d~-~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~ 287 (980)
T KOG4284|consen 209 YPRNLDNLLSKFMRDPALVRFNADDV-QLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEP 287 (980)
T ss_pred CchhHHHHHHHHhcccceeecccCCc-eeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhH
Confidence 99999999999999999887766544 333445554332 22 1256677788888888999999999999999
Q ss_pred HHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCC
Q 018420 233 LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 312 (356)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 312 (356)
++..|...|+.+.++.|.|++.+|...++.+++-.++|||+|+.-++|+|-++++.||..|+|.+...|.+|+||+||.|
T Consensus 288 ~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG 367 (980)
T KOG4284|consen 288 IATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG 367 (980)
T ss_pred HHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEccCCC
Q 018420 313 TKGLAITFVSSASD 326 (356)
Q Consensus 313 ~~~~~~~~~~~~~~ 326 (356)
..|.+++++....+
T Consensus 368 ~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 368 AHGAAVTLLEDERE 381 (980)
T ss_pred ccceeEEEeccchh
Confidence 99999999997665
No 32
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-44 Score=306.05 Aligned_cols=344 Identities=32% Similarity=0.490 Sum_probs=304.8
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-----CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
+|-++++..+.|++++=.|-||||||.+|+.+++.++... ..+|..+|+||+++|+.|+..+.++|.+.. ++++
T Consensus 249 iq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~ 327 (731)
T KOG0339|consen 249 IQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY-GLRV 327 (731)
T ss_pred ccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceE
Confidence 5889999999999999999999999999998888765432 345578999999999999999999998887 9999
Q ss_pred EEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEE
Q 018420 76 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 155 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (356)
+.++||....++.+.++.+ +.|+||||++++.++.-...++.+.+++|+||++++.+ .+|...+..+.....+..|.+
T Consensus 328 v~~ygGgsk~eQ~k~Lk~g-~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfd-mGfe~qVrSI~~hirpdrQtl 405 (731)
T KOG0339|consen 328 VAVYGGGSKWEQSKELKEG-AEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFD-MGFEPQVRSIKQHIRPDRQTL 405 (731)
T ss_pred EEeecCCcHHHHHHhhhcC-CeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhc-cccHHHHHHHHhhcCCcceEE
Confidence 9999999999999999855 79999999999999999999999999999999999998 899999999999999999999
Q ss_pred EEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEc-ChhH-HHHHHHHHHhccCCCeEEEEecchhhHHHH
Q 018420 156 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAEL 233 (356)
Q Consensus 156 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~ 233 (356)
++|||++..+...+...+.+|+.+...... .....+.+.+.-+ .+.. ....+..+......+++|+|+.....++.+
T Consensus 406 lFsaTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i 484 (731)
T KOG0339|consen 406 LFSATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEI 484 (731)
T ss_pred EeeccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHH
Confidence 999999999999999999999988776332 2334444443333 3333 345555666666789999999999999999
Q ss_pred HHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCC
Q 018420 234 NKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 313 (356)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 313 (356)
+..|+-.++.+..+||++.+.+|.+++..|+.+...||++|+...+|+|+|+...|+.+|...+.+.+.||+||.||.|.
T Consensus 485 ~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~ 564 (731)
T KOG0339|consen 485 AANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGE 564 (731)
T ss_pred HHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEccCCChHHHHHHHHHhcccCcccCcccc
Q 018420 314 KGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 349 (356)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (356)
.|.++.++.. .+.++...|.+.++-.-+++|.++-
T Consensus 565 kGvayTlvTe-KDa~fAG~LVnnLe~agQnVP~~l~ 599 (731)
T KOG0339|consen 565 KGVAYTLVTE-KDAEFAGHLVNNLEGAGQNVPDELM 599 (731)
T ss_pred cceeeEEech-hhHHHhhHHHHHHhhccccCChHHH
Confidence 9999999994 6666888888888888899987663
No 33
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-45 Score=298.06 Aligned_cols=339 Identities=32% Similarity=0.556 Sum_probs=297.5
Q ss_pred CccccHhhHhc--CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|..|+|.++. .+++|..+..|+|||.+|.+.++.+....-..|.++.++|+++|+.|+.+-+.++.+.. ++...+.
T Consensus 116 IQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~ya 194 (477)
T KOG0332|consen 116 IQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYA 194 (477)
T ss_pred HHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEE
Confidence 68999999987 47899999999999999999999998887666688889999999999999999987766 7777776
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc-CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
..+.......+. ..+|+++||..+..+... ..+.++++.++|+|||+.+.+..++...-.++....+.++|++++
T Consensus 195 ir~sk~~rG~~i----~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLF 270 (477)
T KOG0332|consen 195 IRGSKAKRGNKL----TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLF 270 (477)
T ss_pred ecCcccccCCcc----hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEee
Confidence 665532222211 138999999999998887 777889999999999999998888888889999999999999999
Q ss_pred EecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcCh-hHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHH
Q 018420 158 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKL 236 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~ 236 (356)
|||..+.+..++.....++..+...... .....+.+.|..+.. ..+...+.++.....-+..||||.++..|..++..
T Consensus 271 SATf~e~V~~Fa~kivpn~n~i~Lk~ee-l~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~ 349 (477)
T KOG0332|consen 271 SATFVEKVAAFALKIVPNANVIILKREE-LALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEE 349 (477)
T ss_pred echhHHHHHHHHHHhcCCCceeeeehhh-ccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHH
Confidence 9999999999999999998887765554 445566677766554 56788888887777778999999999999999999
Q ss_pred HHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC------ChhhhhhccccccC
Q 018420 237 LVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------SADTYLHRVGRAGR 310 (356)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~------s~~~~~Q~~GR~~R 310 (356)
|.+.|..+..+||.+...+|..+++.|+.|..+|||+|+++++|+|++.++.||.|+.|. +...|++|+||+||
T Consensus 350 m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGR 429 (477)
T KOG0332|consen 350 MRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGR 429 (477)
T ss_pred HHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999884 78899999999999
Q ss_pred CCCcceEEEEEccCCChHHHHHHHHHhcccCcccC
Q 018420 311 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 345 (356)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (356)
.|+.|.++-+++...+.+.+..+++.++.....+.
T Consensus 430 FGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 430 FGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred ccccceEEEeecccCcHHHHHHHHHHHhhcceecC
Confidence 99999999999999999999999999988776654
No 34
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-46 Score=291.63 Aligned_cols=319 Identities=78% Similarity=1.231 Sum_probs=301.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|++++|+..-|.+++..|.+|-|||.++.++.++++...++...++++|++|+|+-|+..++.+|.++.|+.++..+.|
T Consensus 68 vqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfG 147 (387)
T KOG0329|consen 68 VQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFG 147 (387)
T ss_pred hhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEc
Confidence 59999999999999999999999999999999999999888888999999999999999999999999999999999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
|...+.+.+.+++ +++|+|+||..++.+.++..+++.+++.+|+|||+.+..+.+.++.++++....+...|++.+|||
T Consensus 148 G~~Ikkdee~lk~-~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsat 226 (387)
T KOG0329|consen 148 GLFIKKDEELLKN-CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 226 (387)
T ss_pred ceeccccHHHHhC-CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeee
Confidence 9999999998888 689999999999999999999999999999999999988889999999999999999999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~ 240 (356)
++.+++...+.++.+|..++++.........+.++|.+..+.+++..+.+++....-+.++||+.+....
T Consensus 227 lskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl---------- 296 (387)
T KOG0329|consen 227 LSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRL---------- 296 (387)
T ss_pred cchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhh----------
Confidence 9999999999999999999999999999999999999999999999999999999889999999886441
Q ss_pred CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 241 NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
. | +.+ +++|+..++|+|+.+++.++.|+.|.+.++|.+|+||+||.|..|.++.+
T Consensus 297 --------------------~-f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitf 351 (387)
T KOG0329|consen 297 --------------------S-F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 351 (387)
T ss_pred --------------------h-h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeeh
Confidence 0 2 223 89999999999999999999999999999999999999999999999999
Q ss_pred EccCCChHHHHHHHHHhcccCcccCcccccCCCCC
Q 018420 321 VSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 355 (356)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (356)
++..++...+......++..+.++|+.++.+.|+.
T Consensus 352 vs~e~da~iLn~vqdRf~v~i~eLpdeid~s~y~~ 386 (387)
T KOG0329|consen 352 VSDENDAKILNPVQDRFEVNIKELPDEIDFSTYEK 386 (387)
T ss_pred hcchhhHHHhchhhHhhhccHhhcCcccchhhhhc
Confidence 99999999999999999999999999998887764
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-44 Score=305.24 Aligned_cols=334 Identities=27% Similarity=0.431 Sum_probs=270.6
Q ss_pred CccccHhhHhc---------CCcEEEEccCCCccchHhHHHhhcCcCCCC-CCeeEEEEcCchHHHHHHHHHHHHHhccC
Q 018420 1 MQHECIPQAIL---------GMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFSTYL 70 (356)
Q Consensus 1 ~Q~~~~~~~~~---------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-~~~~vlii~P~~~l~~q~~~~~~~~~~~~ 70 (356)
+|+..++.++. .+++.|.||||||||++|.+++...+..++ ...+++||+|+++|+.|+++.|.++....
T Consensus 163 VQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~t 242 (620)
T KOG0350|consen 163 VQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGT 242 (620)
T ss_pred hHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCC
Confidence 46666776643 578999999999999999999999988774 44699999999999999999999998886
Q ss_pred CCceEEEEEcCcchHHhHHHHhcCCC----cEEEechHHHHHHHh-cCCcccCCccEEEEeccccccccccchhHHHHHH
Q 018420 71 PDIKVAVFYGGVNIKIHKDLLKNECP----QIVVGTPGRILALAR-DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 145 (356)
Q Consensus 71 ~~~~v~~~~~~~~~~~~~~~~~~~~~----~i~v~T~~~l~~~~~-~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~ 145 (356)
++.|+.+.|..........+.+..+ +|+|+||++++.++. -..+.+.+++++|||||+++.+ ..|..++-...
T Consensus 243 -gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~-qsfQ~Wl~~v~ 320 (620)
T KOG0350|consen 243 -GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLD-QSFQEWLDTVM 320 (620)
T ss_pred -ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHH-HHHHHHHHHHH
Confidence 8999999999888888888887666 999999999999998 4667899999999999999975 22222221111
Q ss_pred hh----------------------------------CCCCCcEEEEEecCccchHHHHHhhcCCCeEEEecc---ccccc
Q 018420 146 KM----------------------------------TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDD---EAKLT 188 (356)
Q Consensus 146 ~~----------------------------------~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 188 (356)
.. ..+....+.+|||+.........--++.|-...+.. ..-..
T Consensus 321 ~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~rysl 400 (620)
T KOG0350|consen 321 SLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSL 400 (620)
T ss_pred HHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeec
Confidence 11 112234678888888776666666677774444332 22223
Q ss_pred cccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHH-hC---CCCeEEEecCCCHHHHHHHHHHhh
Q 018420 189 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLV-EC---NFPSICIHSGMSQEERLTRYKGFK 264 (356)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~-~~---~~~~~~~~~~~~~~~~~~~~~~f~ 264 (356)
...+....+......+.-.+..+++.....++|||+++.+.+..++..|+ .. +.++-.+.|.++...|.+.++.|+
T Consensus 401 p~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~ 480 (620)
T KOG0350|consen 401 PSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFA 480 (620)
T ss_pred ChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHh
Confidence 33444555555555677788888888888999999999999999999998 33 556667899999999999999999
Q ss_pred cCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHH
Q 018420 265 EGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 336 (356)
Q Consensus 265 ~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (356)
.|++.+|||++++++|+|+-+++.||.|++|.+...|++|+||++|.|+.|.++.+.+..+...+.+.+++.
T Consensus 481 ~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~ 552 (620)
T KOG0350|consen 481 KGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKT 552 (620)
T ss_pred cCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999987777777766654
No 36
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=4.9e-46 Score=304.68 Aligned_cols=342 Identities=30% Similarity=0.537 Sum_probs=286.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcC--------CCCCCeeEEEEcCchHHHHHHHHHHHHHhcc---
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE--------PNPGQVTALVLCHTRELAYQICHEFERFSTY--- 69 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~--------~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~--- 69 (356)
+|.+.+|.+++|++++=.|-||||||++|.++++.... ....++--+|+||+|+|+.|+.+-+..++..
T Consensus 196 IQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e 275 (610)
T KOG0341|consen 196 IQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQE 275 (610)
T ss_pred eeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999998877654321 1233457899999999999999988877643
Q ss_pred --CCCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhh
Q 018420 70 --LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 147 (356)
Q Consensus 70 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~ 147 (356)
.|.++.....||....++.+..+.+ .+|+|+||..+...+.....+++-.+++.+|||+++.+ .+|...+..++..
T Consensus 276 ~g~P~lRs~LciGG~~v~eql~~v~~G-vHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiD-mGFEddir~iF~~ 353 (610)
T KOG0341|consen 276 AGYPELRSLLCIGGVPVREQLDVVRRG-VHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMID-MGFEDDIRTIFSF 353 (610)
T ss_pred cCChhhhhhhhhcCccHHHHHHHHhcC-eeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhh-ccchhhHHHHHHH
Confidence 4678888999999999999988887 69999999999999999999998899999999999998 8999999999999
Q ss_pred CCCCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecch
Q 018420 148 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSV 227 (356)
Q Consensus 148 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~ 227 (356)
+....|.+++|||+|..+..+++..+-+|..+.+...-.....- .+.........+.-.+.+.+.. ...|++|||...
T Consensus 354 FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldV-iQevEyVkqEaKiVylLeCLQK-T~PpVLIFaEkK 431 (610)
T KOG0341|consen 354 FKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDV-IQEVEYVKQEAKIVYLLECLQK-TSPPVLIFAEKK 431 (610)
T ss_pred HhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhH-HHHHHHHHhhhhhhhHHHHhcc-CCCceEEEeccc
Confidence 99999999999999999999999999999888765543321111 1111111122222223333332 236899999999
Q ss_pred hhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhcccc
Q 018420 228 SRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 307 (356)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR 307 (356)
..+..+.++|--.|..++.+||+-.+++|...+..|+.|+.+|||||++++.|+|+|+..+||+||.|....+|++|+||
T Consensus 432 ~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGR 511 (610)
T KOG0341|consen 432 ADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGR 511 (610)
T ss_pred cChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcccCc
Q 018420 308 AGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 346 (356)
Q Consensus 308 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (356)
+||.|+.|.+.+|+....++..+-.++..+--.-+++|.
T Consensus 512 TGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~ 550 (610)
T KOG0341|consen 512 TGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPP 550 (610)
T ss_pred cCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCH
Confidence 999999999999999887777776777665555555553
No 37
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.7e-43 Score=338.50 Aligned_cols=317 Identities=24% Similarity=0.316 Sum_probs=228.3
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC------CCCeeEEEEcCchHHHHHHHHHHHHH-------h
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTRELAYQICHEFERF-------S 67 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~vlii~P~~~l~~q~~~~~~~~-------~ 67 (356)
+|.+|++.+.+|+++++++|||||||++++++++..+... ....+++|++|+++|+.|+.+++... .
T Consensus 36 iQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~ 115 (876)
T PRK13767 36 PQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIA 115 (876)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999988765321 23457999999999999998866532 2
Q ss_pred ----ccCCCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCc--ccCCccEEEEeccccccccccch---
Q 018420 68 ----TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLESLDMR--- 138 (356)
Q Consensus 68 ----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~~~~~~~viiDE~H~~~~~~~~~--- 138 (356)
...+++++...+|+.......+.+... ++|+||||+++..++..... .+.++++||+||+|.+.+ ....
T Consensus 116 ~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~-p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~-~~RG~~l 193 (876)
T PRK13767 116 KERGEELPEIRVAIRTGDTSSYEKQKMLKKP-PHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAE-NKRGVHL 193 (876)
T ss_pred HhcCCCcCCeeEEEEcCCCCHHHHHHHHhCC-CCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhcc-CccHHHH
Confidence 123367889999988776665555544 69999999999877755433 468899999999999875 2222
Q ss_pred -hHHHHHHhhCCCCCcEEEEEecCccchHHHHHhhcC-------CCeEEEeccc-cccccccc--eEEEEEcChhH----
Q 018420 139 -RDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQ-------DPMEIYVDDE-AKLTLHGL--VQHYIKLSELE---- 203 (356)
Q Consensus 139 -~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~---- 203 (356)
..+.++....+...|++++|||+++. .....++.. .+..+..... ........ ...........
T Consensus 194 ~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~ 272 (876)
T PRK13767 194 SLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEA 272 (876)
T ss_pred HHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHH
Confidence 23444444444678999999999752 333333322 1222211110 00000000 00000111111
Q ss_pred HHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC------CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCcc
Q 018420 204 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 277 (356)
Q Consensus 204 ~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~ 277 (356)
....+..++. ..+++||||+++..|+.++..|.+. +..+..+||++++.+|..+++.|++|++++||||+++
T Consensus 273 l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~L 350 (876)
T PRK13767 273 LYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSL 350 (876)
T ss_pred HHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChH
Confidence 1222333333 3478999999999999999999873 4678889999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEEecCCCChhhhhhccccccCC-CCcceEEEEEc
Q 018420 278 GRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-GTKGLAITFVS 322 (356)
Q Consensus 278 ~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-~~~~~~~~~~~ 322 (356)
++|+|+|++++||+++.|.+..+|+||+||+||. |..+.+.++..
T Consensus 351 e~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 351 ELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999996 44445555544
No 38
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-44 Score=293.50 Aligned_cols=342 Identities=40% Similarity=0.675 Sum_probs=313.2
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|++|+....+|+++.+.+.+|+|||.++...++..+........++++.|+++|+.|..+..+.+.... +..+..+.|
T Consensus 52 IQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~-~~~v~~~ig 130 (397)
T KOG0327|consen 52 IQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHM-DVSVHACIG 130 (397)
T ss_pred HHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccc-ceeeeeecC
Confidence 6999999999999999999999999999999999998776666688999999999999997777766555 788888999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.+...+...+....++|+++||..++..+....+....+.++++||++.+.. .++...+..++...+++.|++++|||
T Consensus 131 g~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs-~gfkdqI~~if~~lp~~vQv~l~SAT 209 (397)
T KOG0327|consen 131 GTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLS-RGFKDQIYDIFQELPSDVQVVLLSAT 209 (397)
T ss_pred cccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhc-cchHHHHHHHHHHcCcchhheeeccc
Confidence 99998888777776689999999999999988888888899999999999998 89999999999999999999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~ 240 (356)
.+..+....+.++.+|..+...... ...+.+.+.|.......+.+.+..+.+ .-...++||++.+.+..+...|.++
T Consensus 210 ~p~~vl~vt~~f~~~pv~i~vkk~~-ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~ 286 (397)
T KOG0327|consen 210 MPSDVLEVTKKFMREPVRILVKKDE-LTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH 286 (397)
T ss_pred CcHHHHHHHHHhccCceEEEecchh-hhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC
Confidence 9999999999999999988876666 457788888888888788888888888 4478999999999999999999999
Q ss_pred CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 241 NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
+.++..+|+.+.+.+|..+++.|+.|..+|||+|+.+++|+|+..++.|+.|+.|....+|.+|+||+||.|.+|.++.+
T Consensus 287 ~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~ 366 (397)
T KOG0327|consen 287 GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINF 366 (397)
T ss_pred CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCChHHHHHHHHHhcccCcccCccc
Q 018420 321 VSSASDSDILNQVQARFEVDIKELPEQI 348 (356)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
+. ..+...++.+++.+...++++|...
T Consensus 367 v~-~~d~~~lk~ie~~y~~~i~e~p~~~ 393 (397)
T KOG0327|consen 367 VT-EEDVRDLKDIEKFYNTPIEELPSNF 393 (397)
T ss_pred eh-HhhHHHHHhHHHhcCCcceecccch
Confidence 88 5778889999999999999999754
No 39
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-42 Score=294.92 Aligned_cols=306 Identities=22% Similarity=0.324 Sum_probs=229.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 91 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 91 (356)
.++.+++.|||-|||+++++.++..+...++ ++++++||+.|+.|+++.++++.+.. ...+..+.|..........+
T Consensus 29 ~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip-~~~i~~ltGev~p~~R~~~w 105 (542)
T COG1111 29 FKNTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIP-EDEIAALTGEVRPEEREELW 105 (542)
T ss_pred hcCeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCC-hhheeeecCCCChHHHHHHH
Confidence 4589999999999999998888888877665 79999999999999999999988664 56888999987777666666
Q ss_pred hcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccchHHH---
Q 018420 92 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV--- 168 (356)
Q Consensus 92 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~--- 168 (356)
..+ +|+|+|||.+.+-+..+.+++.++.++|+||||+..+.+.+.....+.... ..++.++++||||..+.+..
T Consensus 106 ~~~--kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-~k~~~ilgLTASPGs~~ekI~eV 182 (542)
T COG1111 106 AKK--KVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-AKNPLILGLTASPGSDLEKIQEV 182 (542)
T ss_pred hhC--CEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh-ccCceEEEEecCCCCCHHHHHHH
Confidence 665 899999999999999999999999999999999998866655555555444 45677999999996543222
Q ss_pred HHhhcCCCeEEEeccc--------------------------------------------------c------ccccc--
Q 018420 169 CKKFMQDPMEIYVDDE--------------------------------------------------A------KLTLH-- 190 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~--------------------------------------------------~------~~~~~-- 190 (356)
+.++.-..+.+..+.. . .....
T Consensus 183 ~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~ 262 (542)
T COG1111 183 VENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQI 262 (542)
T ss_pred HHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHH
Confidence 2221111111110000 0 00000
Q ss_pred cceEE-EEEc----------------------------------------------------------------------
Q 018420 191 GLVQH-YIKL---------------------------------------------------------------------- 199 (356)
Q Consensus 191 ~~~~~-~~~~---------------------------------------------------------------------- 199 (356)
+.... ....
T Consensus 263 ~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~ 342 (542)
T COG1111 263 RLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADE 342 (542)
T ss_pred HHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhcc
Confidence 00000 0000
Q ss_pred --ChhHHHHHHHH----HHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeE--EE-------ecCCCHHHHHHHHHHhh
Q 018420 200 --SELEKNRKLND----LLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSI--CI-------HSGMSQEERLTRYKGFK 264 (356)
Q Consensus 200 --~~~~~~~~~~~----~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~--~~-------~~~~~~~~~~~~~~~f~ 264 (356)
-.-.+.+.+.+ .++..+..++|||++.+++|+.+.++|...+..+. ++ ..||++.++.+++++|+
T Consensus 343 ~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr 422 (542)
T COG1111 343 SGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFR 422 (542)
T ss_pred ccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHh
Confidence 00001111111 12223456899999999999999999999987774 32 24799999999999999
Q ss_pred cCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccC
Q 018420 265 EGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 265 ~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
+|+++|||||++.++|+|+|.++.||+|++..|...++||.||+||. ++|.+++++..+
T Consensus 423 ~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 423 KGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred cCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 99999999999999999999999999999999999999999999997 789999888865
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-42 Score=329.74 Aligned_cols=332 Identities=21% Similarity=0.307 Sum_probs=233.5
Q ss_pred CccccHhh-HhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+|.+|++. +..++++++++|||||||+++.++++..+..+ .+++|++|+++|+.|..+.++++.. . ++++..+.
T Consensus 27 ~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~---~kal~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~t 101 (737)
T PRK02362 27 PQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARG---GKALYIVPLRALASEKFEEFERFEE-L-GVRVGIST 101 (737)
T ss_pred HHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcC---CcEEEEeChHHHHHHHHHHHHHhhc-C-CCEEEEEe
Confidence 59999998 67899999999999999999999988887532 2799999999999999999987643 3 78999999
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHH---hhCCCCCcEEE
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF---KMTPHDKQVMM 156 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~---~~~~~~~~~i~ 156 (356)
|+..... +.+ ..++|+|+||+++..++++....++++++||+||+|.+.+ .++...+..+. ....+..|+++
T Consensus 102 Gd~~~~~--~~l--~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d-~~rg~~le~il~rl~~~~~~~qii~ 176 (737)
T PRK02362 102 GDYDSRD--EWL--GDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDS-ANRGPTLEVTLAKLRRLNPDLQVVA 176 (737)
T ss_pred CCcCccc--ccc--CCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCC-CcchHHHHHHHHHHHhcCCCCcEEE
Confidence 8765432 112 2359999999999988887666678999999999999875 44554444433 23346789999
Q ss_pred EEecCccchHHHHHhhcCC-------CeEEEec--cccccccccceEEEEEcCh-hHHHHHHHHHHhccCCCeEEEEecc
Q 018420 157 FSATLSKEIRPVCKKFMQD-------PMEIYVD--DEAKLTLHGLVQHYIKLSE-LEKNRKLNDLLDALDFNQVVIFVKS 226 (356)
Q Consensus 157 ~SaT~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivf~~~ 226 (356)
+|||+++. .++..++... |..+... ......... ......... ......+...+. .++++||||++
T Consensus 177 lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s 252 (737)
T PRK02362 177 LSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSS 252 (737)
T ss_pred EcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchHHHHHHHHHHH--cCCCeEEEEeC
Confidence 99999753 3343333211 1111100 000000000 000000000 111222222222 45799999999
Q ss_pred hhhHHHHHHHHHhCC------------------------------------CCeEEEecCCCHHHHHHHHHHhhcCCCcE
Q 018420 227 VSRAAELNKLLVECN------------------------------------FPSICIHSGMSQEERLTRYKGFKEGNKRI 270 (356)
Q Consensus 227 ~~~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~v 270 (356)
+..++.++..|.... ..+..+|+++++.+|..+++.|++|.++|
T Consensus 253 r~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~V 332 (737)
T PRK02362 253 RRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKV 332 (737)
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeE
Confidence 999999888776431 36788999999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEE----ec-----CCCChhhhhhccccccCCCCc--ceEEEEEccCCChHHHHHHHHHhcc
Q 018420 271 LVATDLVGRGIDIERVNIVIN----YD-----MPDSADTYLHRVGRAGRFGTK--GLAITFVSSASDSDILNQVQARFEV 339 (356)
Q Consensus 271 lv~t~~~~~G~d~~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (356)
|+||+++++|+|+|...+||. |+ .|.+..+|.||+||+||.|.+ |.++++....+ +..+.+++.+..
T Consensus 333 LvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~--~~~~~~~~~l~~ 410 (737)
T PRK02362 333 ISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD--ELDELFERYIWA 410 (737)
T ss_pred EEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch--hHHHHHHHHHhC
Confidence 999999999999999988885 44 578899999999999998875 77777776422 233344444433
Q ss_pred cCcccCccc
Q 018420 340 DIKELPEQI 348 (356)
Q Consensus 340 ~~~~~~~~~ 348 (356)
....+.+.+
T Consensus 411 ~~~~i~S~l 419 (737)
T PRK02362 411 DPEDVRSKL 419 (737)
T ss_pred CCCceeecC
Confidence 433333333
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=9.3e-42 Score=323.36 Aligned_cols=315 Identities=21% Similarity=0.207 Sum_probs=237.3
Q ss_pred CccccHhhHhcC------CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
.|.+|++.+.++ ++.++++|||+|||.+++.+++..+..+. +++|++||++|+.|+++.++++...+ +++
T Consensus 455 ~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~---qvlvLvPT~~LA~Q~~~~f~~~~~~~-~i~ 530 (926)
T TIGR00580 455 DQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGK---QVAVLVPTTLLAQQHFETFKERFANF-PVT 530 (926)
T ss_pred HHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCC---eEEEEeCcHHHHHHHHHHHHHHhccC-CcE
Confidence 388999999874 68999999999999999988887765543 79999999999999999999887776 678
Q ss_pred EEEEEcCcchHHhH---HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCC
Q 018420 75 VAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 151 (356)
Q Consensus 75 v~~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 151 (356)
+..+.|........ +.+..+.++|+|+||..+ ...+.+.+++++||||+|++.. .....+.....+
T Consensus 531 v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfgv------~~~~~L~~~~~~ 599 (926)
T TIGR00580 531 IELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFGV------KQKEKLKELRTS 599 (926)
T ss_pred EEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccch------hHHHHHHhcCCC
Confidence 88888876544333 334456679999999543 3456678999999999998632 223344455667
Q ss_pred CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHH
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAA 231 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~ 231 (356)
.+++++||||.+....+......++..+....... ..+...+...........+...+ ..++++++||++++.++
T Consensus 600 ~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R---~~V~t~v~~~~~~~i~~~i~~el--~~g~qv~if~n~i~~~e 674 (926)
T TIGR00580 600 VDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR---LPVRTFVMEYDPELVREAIRREL--LRGGQVFYVHNRIESIE 674 (926)
T ss_pred CCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc---cceEEEEEecCHHHHHHHHHHHH--HcCCeEEEEECCcHHHH
Confidence 89999999987765444444444554444322221 12222232222211112222211 24578999999999999
Q ss_pred HHHHHHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC-Chhhhhhccccc
Q 018420 232 ELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD-SADTYLHRVGRA 308 (356)
Q Consensus 232 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~-s~~~~~Q~~GR~ 308 (356)
.+++.|+.. +.++..+||+|++.+|.+++.+|++|+.+|||||+++++|+|+|++++||+++++. +..++.|++||+
T Consensus 675 ~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRv 754 (926)
T TIGR00580 675 KLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRV 754 (926)
T ss_pred HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCC
Confidence 999999985 78899999999999999999999999999999999999999999999999998864 677899999999
Q ss_pred cCCCCcceEEEEEccCC--ChHHHHHHHH
Q 018420 309 GRFGTKGLAITFVSSAS--DSDILNQVQA 335 (356)
Q Consensus 309 ~R~~~~~~~~~~~~~~~--~~~~~~~~~~ 335 (356)
||.|+.|.|++++.... .+...+.++.
T Consensus 755 GR~g~~g~aill~~~~~~l~~~~~~RL~~ 783 (926)
T TIGR00580 755 GRSKKKAYAYLLYPHQKALTEDAQKRLEA 783 (926)
T ss_pred CCCCCCeEEEEEECCcccCCHHHHHHHHH
Confidence 99999999999987542 2344444443
No 42
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-43 Score=319.64 Aligned_cols=343 Identities=32% Similarity=0.550 Sum_probs=300.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-----CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
||.+|||++..|+++|..|-||||||++|+++++.+.... ..+|-.+|++|+++|+.|+.+.++.|.... ++.+
T Consensus 391 IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l-~ir~ 469 (997)
T KOG0334|consen 391 IQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL-GIRV 469 (997)
T ss_pred hhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc-CceE
Confidence 6999999999999999999999999999999988665432 246689999999999999999999999886 9999
Q ss_pred EEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCc---cEEEEeccccccccccchhHHHHHHhhCCCCC
Q 018420 76 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNV---RHFILDECDKMLESLDMRRDVQEIFKMTPHDK 152 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~---~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 152 (356)
....|+.....+...++.+ ..|+||||..+...+-.+.-.+.++ .++|+||++++.+ .+|.+....++..+++..
T Consensus 470 v~vygg~~~~~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfd-mgfePq~~~Ii~nlrpdr 547 (997)
T KOG0334|consen 470 VCVYGGSGISQQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFD-MGFEPQITRILQNLRPDR 547 (997)
T ss_pred EEecCCccHHHHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhhe-eccCcccchHHhhcchhh
Confidence 9999999999999999998 7999999999988776544444454 4999999999995 888888888999999999
Q ss_pred cEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcC-hhHHHHHHHHHHhcc-CCCeEEEEecchhhH
Q 018420 153 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLNDLLDAL-DFNQVVIFVKSVSRA 230 (356)
Q Consensus 153 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ivf~~~~~~~ 230 (356)
|.+++|||++..+..+....+..|+.+.+. ......+.+.+.+..+. +.+++..+.+++... ...++||||.+.+.|
T Consensus 548 QtvlfSatfpr~m~~la~~vl~~Pveiiv~-~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~ 626 (997)
T KOG0334|consen 548 QTVLFSATFPRSMEALARKVLKKPVEIIVG-GRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKA 626 (997)
T ss_pred hhhhhhhhhhHHHHHHHHHhhcCCeeEEEc-cceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHH
Confidence 999999999999999998889999886665 44556666677776666 788888888888655 468999999999999
Q ss_pred HHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccC
Q 018420 231 AELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 310 (356)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 310 (356)
..+.+.|.+.|+.+..+||+.++.+|...+..|+++.+++|++|+.+++|+|++.+..||+|+.|..+.+|++|.||+||
T Consensus 627 d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgr 706 (997)
T KOG0334|consen 627 DALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGR 706 (997)
T ss_pred HHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEccCCChHHHHHHHHHhcccCcccCccc
Q 018420 311 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 348 (356)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
.|+.|.+++|+.+ ++..+...|-+.++..-+..|.++
T Consensus 707 agrkg~AvtFi~p-~q~~~a~dl~~al~~~~~~~P~~l 743 (997)
T KOG0334|consen 707 AGRKGAAVTFITP-DQLKYAGDLCKALELSKQPVPKLL 743 (997)
T ss_pred CCccceeEEEeCh-HHhhhHHHHHHHHHhccCCCchHH
Confidence 9999999999997 566666666666666656665433
No 43
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-42 Score=304.65 Aligned_cols=309 Identities=22% Similarity=0.299 Sum_probs=245.7
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|.++++.+++++++++.+|||.||+++|.++++-.- + .+++|+|..+|.+.+.++++.. |+.+..+.+.
T Consensus 22 Q~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~--G----~TLVVSPLiSLM~DQV~~l~~~-----Gi~A~~lnS~ 90 (590)
T COG0514 22 QQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLE--G----LTLVVSPLISLMKDQVDQLEAA-----GIRAAYLNST 90 (590)
T ss_pred HHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcC--C----CEEEECchHHHHHHHHHHHHHc-----Cceeehhhcc
Confidence 889999999999999999999999999999998871 1 6899999999999999988876 7888888888
Q ss_pred cchHHhHHH---HhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc-ccchhHHHHHHhhCC--CCCcEE
Q 018420 82 VNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEIFKMTP--HDKQVM 155 (356)
Q Consensus 82 ~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~~~~~~~--~~~~~i 155 (356)
.+.++.... +..+.-++++.+|+.+..-...+.+.--.+.+++|||||+++.| ++|++.+.++..... ++.+++
T Consensus 91 l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~ 170 (590)
T COG0514 91 LSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVL 170 (590)
T ss_pred cCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEE
Confidence 776665544 44466799999999986644333334557788999999999988 788888776654332 367899
Q ss_pred EEEecCccchHHHHHhhcCCCe-EEEeccccccccccceEEEEEcC-hhHHHHHHHHHHhccCCCeEEEEecchhhHHHH
Q 018420 156 MFSATLSKEIRPVCKKFMQDPM-EIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 233 (356)
Q Consensus 156 ~~SaT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~ 233 (356)
++|||.++.+..-+...+.... .++....... ++.-...... ...+...+.. ......+..||||.++..++.+
T Consensus 171 AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp---Ni~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~i 246 (590)
T COG0514 171 ALTATATPRVRDDIREQLGLQDANIFRGSFDRP---NLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEEL 246 (590)
T ss_pred EEeCCCChHHHHHHHHHhcCCCcceEEecCCCc---hhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHH
Confidence 9999999887777666554332 2333322221 1111111111 1122222221 1244557799999999999999
Q ss_pred HHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCC
Q 018420 234 NKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 313 (356)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 313 (356)
++.|...|+.+..||++++..+|..+.+.|..++.+|+|||.+.+.|||-|++.+||+++.|.|...|.|-+||+||.|.
T Consensus 247 a~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 247 AEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGL 326 (590)
T ss_pred HHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEccCC
Q 018420 314 KGLAITFVSSAS 325 (356)
Q Consensus 314 ~~~~~~~~~~~~ 325 (356)
+..+++++++.+
T Consensus 327 ~a~aill~~~~D 338 (590)
T COG0514 327 PAEAILLYSPED 338 (590)
T ss_pred cceEEEeecccc
Confidence 999999999654
No 44
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-43 Score=299.79 Aligned_cols=334 Identities=30% Similarity=0.517 Sum_probs=262.8
Q ss_pred CccccHhhHhcC-CcEEEEccCCCccchHhHHHhhcCcCCCC-----------CCee--EEEEcCchHHHHHHHHHHHHH
Q 018420 1 MQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNP-----------GQVT--ALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 1 ~Q~~~~~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~-----------~~~~--vlii~P~~~l~~q~~~~~~~~ 66 (356)
||...+|++..| .+++=.|.||||||++|-++++..+.+.+ ..++ .+|+.|||+|+-|+.+-+...
T Consensus 207 IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai 286 (731)
T KOG0347|consen 207 IQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAI 286 (731)
T ss_pred chhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHh
Confidence 688889999988 78999999999999999999988433221 2223 899999999999999999887
Q ss_pred hccCCCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCc---ccCCccEEEEeccccccccccchhHHHH
Q 018420 67 STYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL---SLKNVRHFILDECDKMLESLDMRRDVQE 143 (356)
Q Consensus 67 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~---~~~~~~~viiDE~H~~~~~~~~~~~~~~ 143 (356)
... +++.+..+.||.....+...+.. +++|+|+||.+|+.++..... .+.+++++|+||++++.. .++...+..
T Consensus 287 ~~~-t~i~v~si~GGLavqKQqRlL~~-~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmve-kghF~Els~ 363 (731)
T KOG0347|consen 287 AEK-TQIRVASITGGLAVQKQQRLLNQ-RPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVE-KGHFEELSK 363 (731)
T ss_pred ccc-cCeEEEEeechhHHHHHHHHHhc-CCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhh-hccHHHHHH
Confidence 665 49999999999998888777776 589999999999998876544 467889999999999998 677777776
Q ss_pred HHhhCC-----CCCcEEEEEecCccc---------------------hHHHHHh--hcCCCeEEEeccccccccccceEE
Q 018420 144 IFKMTP-----HDKQVMMFSATLSKE---------------------IRPVCKK--FMQDPMEIYVDDEAKLTLHGLVQH 195 (356)
Q Consensus 144 ~~~~~~-----~~~~~i~~SaT~~~~---------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 195 (356)
+++.+. ...|.+.+|||+.-. +..+++. +.+.|..+....... ....+...
T Consensus 364 lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~-ta~~l~Es 442 (731)
T KOG0347|consen 364 LLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSA-TASTLTES 442 (731)
T ss_pred HHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchh-HHHHHHHH
Confidence 666554 346899999997422 1122222 234454333332221 22223333
Q ss_pred EEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC
Q 018420 196 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 275 (356)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~ 275 (356)
.+.++..++...+..++..++ +++|||||+++.+..+.-+|...++....+|+.|.+.+|.+.++.|++..-.|||||+
T Consensus 443 ~I~C~~~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTD 521 (731)
T KOG0347|consen 443 LIECPPLEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATD 521 (731)
T ss_pred hhcCCccccceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeeh
Confidence 344444455444444455444 7899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhccc
Q 018420 276 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVD 340 (356)
Q Consensus 276 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (356)
++++|+|+|++.|||+|-.|.+.+.|++|.||+.|.+..|.++.++.+.+ ...+..+.+.+...
T Consensus 522 VAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e-~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 522 VAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE-VGPLKKLCKTLKKK 585 (731)
T ss_pred hhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH-hHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999765 44445555544433
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3e-41 Score=326.49 Aligned_cols=314 Identities=20% Similarity=0.213 Sum_probs=239.4
Q ss_pred CccccHhhHhcC------CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
.|.+|++.+..+ ++.+++++||+|||.+++.++...+..+ .++++++||++|+.|+++.+++....+ +++
T Consensus 604 ~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g---~qvlvLvPT~eLA~Q~~~~f~~~~~~~-~v~ 679 (1147)
T PRK10689 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENH---KQVAVLVPTTLLAQQHYDNFRDRFANW-PVR 679 (1147)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHhhccC-Cce
Confidence 489999999886 7899999999999998877766555432 379999999999999999999877665 678
Q ss_pred EEEEEcCcchHHhHHHH---hcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCC
Q 018420 75 VAVFYGGVNIKIHKDLL---KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 151 (356)
Q Consensus 75 v~~~~~~~~~~~~~~~~---~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 151 (356)
+..+.++.....+.+.+ ..+..+|+|+||+.+. ..+.+.+++++||||+|++.. . ....+...+.+
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~--~----~~e~lk~l~~~ 748 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGV--R----HKERIKAMRAD 748 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcch--h----HHHHHHhcCCC
Confidence 88888887766655443 3456799999997542 345568899999999999732 2 23444556678
Q ss_pred CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhH-HHHHHHHHHhccCCCeEEEEecchhhH
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRA 230 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivf~~~~~~~ 230 (356)
.+++++||||.+....+....+.++..+........ .+........... +...+..+. .++++++||++++.+
T Consensus 749 ~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~---~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~i 822 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL---AVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENI 822 (1147)
T ss_pred CcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCC---CceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHH
Confidence 899999999987766666666777766654333221 1222222222211 222222222 457899999999999
Q ss_pred HHHHHHHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCC-CChhhhhhcccc
Q 018420 231 AELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP-DSADTYLHRVGR 307 (356)
Q Consensus 231 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR 307 (356)
+.+++.|.+. +.++..+||+|++.+|.+++..|++|+++|||||+++++|+|+|++++||+.++. .+..+|.|++||
T Consensus 823 e~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GR 902 (1147)
T PRK10689 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 (1147)
T ss_pred HHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhc
Confidence 9999999987 7889999999999999999999999999999999999999999999999976553 467789999999
Q ss_pred ccCCCCcceEEEEEccCC--ChHHHHHHHH
Q 018420 308 AGRFGTKGLAITFVSSAS--DSDILNQVQA 335 (356)
Q Consensus 308 ~~R~~~~~~~~~~~~~~~--~~~~~~~~~~ 335 (356)
+||.|+.|.|++++.... .+...+.++.
T Consensus 903 vGR~g~~g~a~ll~~~~~~~~~~~~~rl~~ 932 (1147)
T PRK10689 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 (1147)
T ss_pred cCCCCCceEEEEEeCCCcccCHHHHHHHHH
Confidence 999999999998886432 3344445443
No 46
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=312.06 Aligned_cols=317 Identities=26% Similarity=0.324 Sum_probs=247.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-----CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
.|.+|++.+.+|+|++|.||||||||.+++++++..+... ..+..++||+|.++|..++.++++...... |+++
T Consensus 26 ~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~-G~~v 104 (814)
T COG1201 26 PQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLREL-GIEV 104 (814)
T ss_pred HHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHc-CCcc
Confidence 3999999999999999999999999999999999877655 244689999999999999999999998877 9999
Q ss_pred EEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCc--ccCCccEEEEecccccccc---ccchhHHHHHHhhCCC
Q 018420 76 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLES---LDMRRDVQEIFKMTPH 150 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~~~~~~~viiDE~H~~~~~---~~~~~~~~~~~~~~~~ 150 (356)
...+|+....+..+...+ +++|++|||+++.-++..... .+.++++|||||.|.+... ....-.+.++....+
T Consensus 105 ~vRhGDT~~~er~r~~~~-PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~- 182 (814)
T COG1201 105 AVRHGDTPQSEKQKMLKN-PPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAG- 182 (814)
T ss_pred ceecCCCChHHhhhccCC-CCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCc-
Confidence 999998776665555444 479999999999877765432 3788999999999999763 112233455555555
Q ss_pred CCcEEEEEecCccchHHHHHhhcCC--CeEEEecc-ccccccccceEEEE----EcChhHHHHHHHHHHhccCCCeEEEE
Q 018420 151 DKQVMMFSATLSKEIRPVCKKFMQD--PMEIYVDD-EAKLTLHGLVQHYI----KLSELEKNRKLNDLLDALDFNQVVIF 223 (356)
Q Consensus 151 ~~~~i~~SaT~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ivf 223 (356)
..|.|++|||..+ .....+.+.+. ++.+.... .......-+..... ..........+.++++++ ..++||
T Consensus 183 ~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~--~ttLIF 259 (814)
T COG1201 183 DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH--RTTLIF 259 (814)
T ss_pred ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc--CcEEEE
Confidence 8999999999985 35566666555 34443322 22222211111100 011122345555556655 489999
Q ss_pred ecchhhHHHHHHHHHhCC-CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhh
Q 018420 224 VKSVSRAAELNKLLVECN-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 302 (356)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~ 302 (356)
+|++.+++.++..|++.+ ..+..+||.++.+.|.++.+.|++|+.+.+|||+.++-|+|+.+++.||+++.|.++..+.
T Consensus 260 ~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~l 339 (814)
T COG1201 260 TNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFL 339 (814)
T ss_pred EeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHh
Confidence 999999999999999986 8888899999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCC-CCcceEEEEEcc
Q 018420 303 HRVGRAGRF-GTKGLAITFVSS 323 (356)
Q Consensus 303 Q~~GR~~R~-~~~~~~~~~~~~ 323 (356)
||+||+|+. +.....+++...
T Consensus 340 QRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 340 QRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HhccccccccCCcccEEEEecC
Confidence 999999985 444666666654
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.5e-40 Score=311.26 Aligned_cols=315 Identities=20% Similarity=0.251 Sum_probs=230.0
Q ss_pred CccccHhhHhcC------CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
.|++|++.+.++ ++.++++|||||||.+++++++..+..+. ++++++||++|+.|+++.++++.... +++
T Consensus 265 ~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~---q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~ 340 (681)
T PRK10917 265 AQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGY---QAALMAPTEILAEQHYENLKKLLEPL-GIR 340 (681)
T ss_pred HHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCC---eEEEEeccHHHHHHHHHHHHHHHhhc-CcE
Confidence 489999999875 47899999999999999999888775433 79999999999999999999988776 789
Q ss_pred EEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCC
Q 018420 75 VAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 151 (356)
Q Consensus 75 v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 151 (356)
+..++|+........ .+.++.++|+|+||..+. ....+.++++||+||+|++.. ..+..+ ......
T Consensus 341 v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvVIDE~Hrfg~--~qr~~l----~~~~~~ 409 (681)
T PRK10917 341 VALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVIIDEQHRFGV--EQRLAL----REKGEN 409 (681)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEEEechhhhhH--HHHHHH----HhcCCC
Confidence 999999987654433 445567899999998774 334578899999999998733 222222 222345
Q ss_pred CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhc-cCCCeEEEEecch---
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA-LDFNQVVIFVKSV--- 227 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivf~~~~--- 227 (356)
++++++||||.+...... ..++.....+... +.....+...+...... ...+..+.+. ..+++++|||+.+
T Consensus 410 ~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~-p~~r~~i~~~~~~~~~~--~~~~~~i~~~~~~g~q~~v~~~~ie~s 484 (681)
T PRK10917 410 PHVLVMTATPIPRTLAMT--AYGDLDVSVIDEL-PPGRKPITTVVIPDSRR--DEVYERIREEIAKGRQAYVVCPLIEES 484 (681)
T ss_pred CCEEEEeCCCCHHHHHHH--HcCCCceEEEecC-CCCCCCcEEEEeCcccH--HHHHHHHHHHHHcCCcEEEEEcccccc
Confidence 789999999876533322 2232222121111 11112222222222221 1222222222 2557899999954
Q ss_pred -----hhHHHHHHHHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC-Chh
Q 018420 228 -----SRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD-SAD 299 (356)
Q Consensus 228 -----~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~-s~~ 299 (356)
..+..+++.|... +.++..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++++|. +..
T Consensus 485 ~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls 564 (681)
T PRK10917 485 EKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLA 564 (681)
T ss_pred cchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHH
Confidence 3456677777765 46899999999999999999999999999999999999999999999999999886 678
Q ss_pred hhhhccccccCCCCcceEEEEEccCCChHHHHHHHH
Q 018420 300 TYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 335 (356)
Q Consensus 300 ~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (356)
.+.|+.||+||.|+.|.|++++.....+...+.++.
T Consensus 565 ~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~ 600 (681)
T PRK10917 565 QLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKI 600 (681)
T ss_pred HHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHH
Confidence 899999999999999999999964434444444443
No 48
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-42 Score=297.18 Aligned_cols=346 Identities=32% Similarity=0.407 Sum_probs=282.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-----CCCeeEEEEcCchHHHHHHHHHHHHHh--ccCCCc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTRELAYQICHEFERFS--TYLPDI 73 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~vlii~P~~~l~~q~~~~~~~~~--~~~~~~ 73 (356)
+|.+|+|.+..+++++.|+|||+|||++|.++++..+... +.+.+++|+.|+++|+.|...+.+++. ... +.
T Consensus 162 iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~ 240 (593)
T KOG0344|consen 162 IQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGT-SL 240 (593)
T ss_pred ccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCC-ch
Confidence 5999999999999999999999999999999999876544 345689999999999999999999987 332 33
Q ss_pred eEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCC--cccCCccEEEEeccccccccccchhHHHHHHhhCC-C
Q 018420 74 KVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-H 150 (356)
Q Consensus 74 ~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~ 150 (356)
++.....................+++++||..+..++..+. +.++++.++|+||++.+.....|...+..++..+. +
T Consensus 241 ~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~ 320 (593)
T KOG0344|consen 241 RAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSP 320 (593)
T ss_pred hhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCc
Confidence 33332222111111111222225899999999999888765 67889999999999999885477777888877665 4
Q ss_pred CCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhH
Q 018420 151 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRA 230 (356)
Q Consensus 151 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~ 230 (356)
+..+-++|||.+..+++++.....++..+.+.........-.........+..+.-.+..++...-.-|++||+.+.+.|
T Consensus 321 ~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRa 400 (593)
T KOG0344|consen 321 DIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERA 400 (593)
T ss_pred chhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHH
Confidence 55677899999999999999999888888776654443332233345556677888888888888778999999999999
Q ss_pred HHHHHHH-HhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhcccccc
Q 018420 231 AELNKLL-VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 309 (356)
Q Consensus 231 ~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 309 (356)
.++...| ...++.+..+||+.++.+|.+.++.|+.|++.+|+||+.+++|+|+.+++.||++|.|.+..+|++|+||+|
T Consensus 401 k~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtg 480 (593)
T KOG0344|consen 401 KQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTG 480 (593)
T ss_pred HHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccC
Confidence 9999999 677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEccCCChHHHHHHHHHhcccCcccCccc
Q 018420 310 RFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 348 (356)
Q Consensus 310 R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
|.|+.|.+++||.. .+...++.+....+.+-.++|+-+
T Consensus 481 Rag~~g~Aitfytd-~d~~~ir~iae~~~~sG~evpe~~ 518 (593)
T KOG0344|consen 481 RAGRSGKAITFYTD-QDMPRIRSIAEVMEQSGCEVPEKI 518 (593)
T ss_pred CCCCCcceEEEecc-ccchhhhhHHHHHHHcCCcchHHH
Confidence 99999999999995 666777777777777777777543
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2e-40 Score=308.56 Aligned_cols=317 Identities=21% Similarity=0.257 Sum_probs=228.0
Q ss_pred CccccHhhHhcC------CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
.|++|++.+.++ .+.++++|||||||.+++++++..+..+. +++|++||++|+.|++++++++.... +++
T Consensus 239 ~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~---qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~ 314 (630)
T TIGR00643 239 AQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGY---QVALMAPTEILAEQHYNSLRNLLAPL-GIE 314 (630)
T ss_pred HHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCC---cEEEECCHHHHHHHHHHHHHHHhccc-CcE
Confidence 388999999875 35799999999999999888888776543 79999999999999999999988776 789
Q ss_pred EEEEEcCcchHHhH---HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCC
Q 018420 75 VAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 151 (356)
Q Consensus 75 v~~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 151 (356)
+..++|+....... ..+.++.++|+|+||..+. ....+.++++||+||+|++.. ..+..+...... ...
T Consensus 315 v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~-----~~~~~~~l~lvVIDEaH~fg~--~qr~~l~~~~~~-~~~ 386 (630)
T TIGR00643 315 VALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ-----EKVEFKRLALVIIDEQHRFGV--EQRKKLREKGQG-GFT 386 (630)
T ss_pred EEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh-----ccccccccceEEEechhhccH--HHHHHHHHhccc-CCC
Confidence 99999987765533 3445666899999998774 335568899999999998743 222222222111 125
Q ss_pred CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhc-cCCCeEEEEecch---
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA-LDFNQVVIFVKSV--- 227 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ivf~~~~--- 227 (356)
++++++||||.+..... ...++......... ......+...+.... .....+..+.+. ..+++++|||+..
T Consensus 387 ~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~-p~~r~~i~~~~~~~~--~~~~~~~~i~~~l~~g~q~~v~~~~i~~s 461 (630)
T TIGR00643 387 PHVLVMSATPIPRTLAL--TVYGDLDTSIIDEL-PPGRKPITTVLIKHD--EKDIVYEFIEEEIAKGRQAYVVYPLIEES 461 (630)
T ss_pred CCEEEEeCCCCcHHHHH--HhcCCcceeeeccC-CCCCCceEEEEeCcc--hHHHHHHHHHHHHHhCCcEEEEEcccccc
Confidence 78999999987643322 22222111111111 111112222222211 222222223222 2457899999876
Q ss_pred -----hhHHHHHHHHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC-Chh
Q 018420 228 -----SRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD-SAD 299 (356)
Q Consensus 228 -----~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~-s~~ 299 (356)
..+..+++.|.+. +..+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.+. +..
T Consensus 462 ~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls 541 (630)
T TIGR00643 462 EKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLS 541 (630)
T ss_pred ccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHH
Confidence 4566777777764 67899999999999999999999999999999999999999999999999999885 688
Q ss_pred hhhhccccccCCCCcceEEEEEccCCChHHHHHHH
Q 018420 300 TYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 334 (356)
Q Consensus 300 ~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~ 334 (356)
.+.|+.||+||.|+.|.|++++.........+.++
T Consensus 542 ~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~ 576 (630)
T TIGR00643 542 QLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLR 576 (630)
T ss_pred HHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHH
Confidence 89999999999999999999985444444433433
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.5e-41 Score=319.18 Aligned_cols=309 Identities=19% Similarity=0.252 Sum_probs=227.0
Q ss_pred CccccHhh-HhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+|.++++. +.+++++++++|||||||+++.++++..+.... .+++|++|+++|+.|+.+.+..+.. . ++++..++
T Consensus 27 ~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~--~~~l~l~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~ 102 (720)
T PRK00254 27 PQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREG--GKAVYLVPLKALAEEKYREFKDWEK-L-GLRVAMTT 102 (720)
T ss_pred HHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC--CeEEEEeChHHHHHHHHHHHHHHhh-c-CCEEEEEe
Confidence 58999986 788999999999999999999998887765432 2899999999999999999987643 3 78999999
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
|+..... ..+ +.++|+|+||+++..++++....++++++||+||+|.+.+ .+....+..+........|++++||
T Consensus 103 Gd~~~~~--~~~--~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~-~~rg~~le~il~~l~~~~qiI~lSA 177 (720)
T PRK00254 103 GDYDSTD--EWL--GKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGS-YDRGATLEMILTHMLGRAQILGLSA 177 (720)
T ss_pred CCCCCch--hhh--ccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCC-ccchHHHHHHHHhcCcCCcEEEEEc
Confidence 8765432 222 2369999999999988887666788999999999999876 4566777778777778899999999
Q ss_pred cCccchHHHHHhhcCCCeEEEeccccccccc--cceEEEEEcCh-------hHHHHHHHHHHhccCCCeEEEEecchhhH
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH--GLVQHYIKLSE-------LEKNRKLNDLLDALDFNQVVIFVKSVSRA 230 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ivf~~~~~~~ 230 (356)
|+++. ..+..+ ++.+.... ...+.... .....+..... ......+...+. .++++||||+++..+
T Consensus 178 Tl~n~-~~la~w-l~~~~~~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~ 251 (720)
T PRK00254 178 TVGNA-EELAEW-LNAELVVS--DWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSA 251 (720)
T ss_pred cCCCH-HHHHHH-hCCccccC--CCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHH
Confidence 99853 444443 33222111 10010000 00011111111 111122333333 357899999999999
Q ss_pred HHHHHHHHhC---------------------------------CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCcc
Q 018420 231 AELNKLLVEC---------------------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 277 (356)
Q Consensus 231 ~~~~~~l~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~ 277 (356)
+.++..|... ...+.++|+++++.+|..+++.|++|.++|||||+++
T Consensus 252 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tL 331 (720)
T PRK00254 252 EKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTL 331 (720)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHH
Confidence 8877665321 2358889999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEE-------ecCC-CChhhhhhccccccCCC--CcceEEEEEccC
Q 018420 278 GRGIDIERVNIVIN-------YDMP-DSADTYLHRVGRAGRFG--TKGLAITFVSSA 324 (356)
Q Consensus 278 ~~G~d~~~~~~vi~-------~~~~-~s~~~~~Q~~GR~~R~~--~~~~~~~~~~~~ 324 (356)
++|+|+|..++||. ++.+ .+..+|.||+||+||.| ..|.++++....
T Consensus 332 a~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 332 SAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred hhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 99999999998884 2322 35678999999999965 567888887643
No 51
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.6e-40 Score=320.83 Aligned_cols=322 Identities=21% Similarity=0.298 Sum_probs=225.2
Q ss_pred EEccCCCccchHhHHHhhcCcCCC----------CCCeeEEEEcCchHHHHHHHHHHHHHhc-----------cCCCceE
Q 018420 17 CQAKSGMGKTAVFVLSTLQQTEPN----------PGQVTALVLCHTRELAYQICHEFERFST-----------YLPDIKV 75 (356)
Q Consensus 17 i~~~tGsGKT~~~~~~~~~~~~~~----------~~~~~vlii~P~~~l~~q~~~~~~~~~~-----------~~~~~~v 75 (356)
|++|||||||+++.++++..+... +++.+++||+|+++|+.|+.++++.... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999888766432 2345899999999999999998875221 1237899
Q ss_pred EEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC-CcccCCccEEEEeccccccccc---cchhHHHHHHhhCCCC
Q 018420 76 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESL---DMRRDVQEIFKMTPHD 151 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~~~---~~~~~~~~~~~~~~~~ 151 (356)
...+|+.+.....+.+.+. ++|+|+||+++..++.+. ...++++++|||||+|.+.+.. .+...+.++....+.+
T Consensus 81 ~vrtGDt~~~eR~rll~~p-pdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~ 159 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNP-PDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTS 159 (1490)
T ss_pred EEEECCCCHHHHHHHhcCC-CCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCC
Confidence 9999998887766655544 699999999998876543 3457899999999999997621 1334566666666678
Q ss_pred CcEEEEEecCccchHHHHHhhcC-CCeEEEeccccccccccceEEEEEcChh--------------------HHHHHH-H
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQ-DPMEIYVDDEAKLTLHGLVQHYIKLSEL--------------------EKNRKL-N 209 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~-~ 209 (356)
.|+|++|||+.+ ......++.. .+..+....... ...+. .+...... .....+ .
T Consensus 160 ~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~~r--~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 160 AQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPAMR--HPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCCCc--ccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 899999999986 3555544433 344443211111 11111 11111000 000111 1
Q ss_pred HHHhc-cCCCeEEEEecchhhHHHHHHHHHhCC---------------------------------CCeEEEecCCCHHH
Q 018420 210 DLLDA-LDFNQVVIFVKSVSRAAELNKLLVECN---------------------------------FPSICIHSGMSQEE 255 (356)
Q Consensus 210 ~~~~~-~~~~~~ivf~~~~~~~~~~~~~l~~~~---------------------------------~~~~~~~~~~~~~~ 255 (356)
.++.. ...+++|||||++..|+.++..|++.. ..+..+||++++++
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkee 315 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQ 315 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHH
Confidence 22222 234789999999999999999887641 11457899999999
Q ss_pred HHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHH---H
Q 018420 256 RLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN---Q 332 (356)
Q Consensus 256 ~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~---~ 332 (356)
|..+++.|++|++++||||+.++.|||++.+++||+++.|.+..+|+||+||+||. ..+.+..++.+.+..++++ .
T Consensus 316 R~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~~~ 394 (1490)
T PRK09751 316 RAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVI 394 (1490)
T ss_pred HHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999996 2333333333333333333 2
Q ss_pred HHHHhcccCccc
Q 018420 333 VQARFEVDIKEL 344 (356)
Q Consensus 333 ~~~~~~~~~~~~ 344 (356)
++..+...++.+
T Consensus 395 ve~~l~g~iE~~ 406 (1490)
T PRK09751 395 VECMFAGRLENL 406 (1490)
T ss_pred HHHHhcCCCCcc
Confidence 344445444443
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.6e-40 Score=312.02 Aligned_cols=307 Identities=21% Similarity=0.284 Sum_probs=219.4
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|+++++.+.+++++++++|||||||+++.++++..+..+. +++|++|+++|+.|.++++.++.. . +..+....|
T Consensus 26 ~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~---k~v~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G 100 (674)
T PRK01172 26 HQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGL---KSIYIVPLRSLAMEKYEELSRLRS-L-GMRVKISIG 100 (674)
T ss_pred HHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCC---cEEEEechHHHHHHHHHHHHHHhh-c-CCeEEEEeC
Confidence 49999999999999999999999999999888887765432 799999999999999999987643 2 778888888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHH---hhCCCCCcEEEE
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF---KMTPHDKQVMMF 157 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~---~~~~~~~~~i~~ 157 (356)
+..... ..+. ..+|+|+||+++..++.++...++++++||+||+|.+.+ .++...+..+. ...++..|++++
T Consensus 101 ~~~~~~--~~~~--~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d-~~rg~~le~ll~~~~~~~~~~riI~l 175 (674)
T PRK01172 101 DYDDPP--DFIK--RYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGD-EDRGPTLETVLSSARYVNPDARILAL 175 (674)
T ss_pred CCCCCh--hhhc--cCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccC-CCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 655332 2222 259999999999888887776688999999999999865 34444444433 334567899999
Q ss_pred EecCccchHHHHHhhcCCCeEEEecccccccccc-c---eEEEEEcChhHHHHHHHHHHhc--cCCCeEEEEecchhhHH
Q 018420 158 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHG-L---VQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAA 231 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivf~~~~~~~~ 231 (356)
|||+++. .++..++ +.+... . ......... . ...+.. ........+..++.. ..++++||||++++.++
T Consensus 176 SATl~n~-~~la~wl-~~~~~~-~-~~r~vpl~~~i~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~ 250 (674)
T PRK01172 176 SATVSNA-NELAQWL-NASLIK-S-NFRPVPLKLGILYRKRLILD-GYERSQVDINSLIKETVNDGGQVLVFVSSRKNAE 250 (674)
T ss_pred eCccCCH-HHHHHHh-CCCccC-C-CCCCCCeEEEEEecCeeeec-ccccccccHHHHHHHHHhCCCcEEEEeccHHHHH
Confidence 9999753 4444433 222110 0 000000000 0 000110 000111112222222 24579999999999999
Q ss_pred HHHHHHHhCC-------------------------CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCC
Q 018420 232 ELNKLLVECN-------------------------FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 286 (356)
Q Consensus 232 ~~~~~l~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~ 286 (356)
.++..|.... ..+..+|+++++.+|..+++.|++|.++|||||+++++|+|+|..
T Consensus 251 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~ 330 (674)
T PRK01172 251 DYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR 330 (674)
T ss_pred HHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce
Confidence 9998887531 246779999999999999999999999999999999999999975
Q ss_pred CEEEEecC---------CCChhhhhhccccccCCCC--cceEEEEEcc
Q 018420 287 NIVINYDM---------PDSADTYLHRVGRAGRFGT--KGLAITFVSS 323 (356)
Q Consensus 287 ~~vi~~~~---------~~s~~~~~Q~~GR~~R~~~--~~~~~~~~~~ 323 (356)
.||+.+. |.+..+|.||+||+||.|. .|.++++...
T Consensus 331 -~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~ 377 (674)
T PRK01172 331 -LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAAS 377 (674)
T ss_pred -EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecC
Confidence 4555442 4578899999999999885 4556666553
No 53
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.3e-39 Score=295.82 Aligned_cols=306 Identities=17% Similarity=0.167 Sum_probs=213.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
.|.+|++.++.+++.++++|||+|||.++...+...+... . .++++++|+++|+.||.++++++.... ...+..+.+
T Consensus 118 ~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~-~-~~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~~~i~~ 194 (501)
T PHA02558 118 YQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENY-E-GKVLIIVPTTSLVTQMIDDFVDYRLFP-REAMHKIYS 194 (501)
T ss_pred HHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEECcHHHHHHHHHHHHHhcccc-ccceeEEec
Confidence 3889999999999999999999999987654332222222 2 279999999999999999999876432 334444445
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.... ...+|+|+|++++..... ..++++++||+||||++.+ ..+..+...+++..+++++|||
T Consensus 195 g~~~~--------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~-----~~~~~il~~~~~~~~~lGLTAT 258 (501)
T PHA02558 195 GTAKD--------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG-----KSLTSIITKLDNCKFKFGLTGS 258 (501)
T ss_pred CcccC--------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc-----hhHHHHHHhhhccceEEEEecc
Confidence 43321 225899999999875332 2457899999999999865 2345555556566789999999
Q ss_pred CccchHHH--HHhhcCCCeEEEecccccc--------------------ccccce-EEEE-----EcChhHHHHHHHHHH
Q 018420 161 LSKEIRPV--CKKFMQDPMEIYVDDEAKL--------------------TLHGLV-QHYI-----KLSELEKNRKLNDLL 212 (356)
Q Consensus 161 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~--------------------~~~~~~-~~~~-----~~~~~~~~~~~~~~~ 212 (356)
|.+..... ....++ |........... ...... ..+. ......+...+..+.
T Consensus 259 p~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~ 337 (501)
T PHA02558 259 LRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLA 337 (501)
T ss_pred CCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHH
Confidence 97542211 111222 111111100000 000000 0000 001111222333332
Q ss_pred hc--cCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEc-CccccCCCCCCCCEE
Q 018420 213 DA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDIERVNIV 289 (356)
Q Consensus 213 ~~--~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t-~~~~~G~d~~~~~~v 289 (356)
.. ..+.+++|||.+.++++.+++.|.+.+.++..+||+++..+|..+++.|++|+..|||+| +.+++|+|+|++++|
T Consensus 338 ~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~v 417 (501)
T PHA02558 338 LKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHV 417 (501)
T ss_pred HHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEE
Confidence 22 245788999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred EEecCCCChhhhhhccccccCCCCcceEEEEEccCCC
Q 018420 290 INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 290 i~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 326 (356)
|++.++.|...|+|++||++|.+..+..+.+++..++
T Consensus 418 Il~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 418 IFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred EEecCCcchhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 9999999999999999999998877665555544433
No 54
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.4e-39 Score=297.85 Aligned_cols=310 Identities=19% Similarity=0.224 Sum_probs=224.7
Q ss_pred CccccHhhHhcCC-cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCC--------
Q 018420 1 MQHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP-------- 71 (356)
Q Consensus 1 ~Q~~~~~~~~~~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~-------- 71 (356)
+|.++++.++.|+ .+++.+|||||||.++....+..........++++++|+|+|+.|.++.++++...++
T Consensus 19 iQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~ 98 (844)
T TIGR02621 19 WQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAA 98 (844)
T ss_pred HHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 5999999999998 5777899999999865433332222222233566688999999999999999886542
Q ss_pred --------------CceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHh-cC--------Cc---ccCCccEEEE
Q 018420 72 --------------DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR-DK--------DL---SLKNVRHFIL 125 (356)
Q Consensus 72 --------------~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~-~~--------~~---~~~~~~~vii 125 (356)
.+++..+.||.....+...+..+ ++|+|+|++.+.+-.- ++ .+ .+.++.++|+
T Consensus 99 ~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~-p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVL 177 (844)
T TIGR02621 99 LWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHR-PAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVH 177 (844)
T ss_pred hhhhhccccccccCCeEEEEEECCCChHHHHHhcCCC-CcEEEECHHHHcCCccccccccccccccchhhhhccceEEEE
Confidence 47889999999988777777655 6999999877654211 00 01 1567889999
Q ss_pred eccccccccccchhHHHHHHhhC--CC---CCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcC
Q 018420 126 DECDKMLESLDMRRDVQEIFKMT--PH---DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS 200 (356)
Q Consensus 126 DE~H~~~~~~~~~~~~~~~~~~~--~~---~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (356)
|||| .. .+|...+..+.... +. +.|+++||||++.........+..++..+.+.. .......+.+ +....
T Consensus 178 DEAD--Ld-~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~-~~l~a~ki~q-~v~v~ 252 (844)
T TIGR02621 178 DEAH--LE-PAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK-KRLAAKKIVK-LVPPS 252 (844)
T ss_pred ehhh--hc-cccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc-ccccccceEE-EEecC
Confidence 9999 23 67888888888854 32 269999999999887777667766665444322 2222223333 33333
Q ss_pred hhHHHHHHHHHH---hccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHH-----HHHHHhhc----CC-
Q 018420 201 ELEKNRKLNDLL---DALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERL-----TRYKGFKE----GN- 267 (356)
Q Consensus 201 ~~~~~~~~~~~~---~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~f~~----~~- 267 (356)
...+...+...+ ....++++||||++++.++.+++.|...+. ..+||++++.+|. .+++.|++ +.
T Consensus 253 ~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~ 330 (844)
T TIGR02621 253 DEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSR 330 (844)
T ss_pred hHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccc
Confidence 322222211111 123457899999999999999999998876 8899999999999 77888986 43
Q ss_pred ------CcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcc-eEEEEE
Q 018420 268 ------KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKG-LAITFV 321 (356)
Q Consensus 268 ------~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~-~~~~~~ 321 (356)
.+|||||+++++|+|++. ++||....| ..+|+||+||+||.|+.+ ..+.++
T Consensus 331 ~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 331 ARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred ccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 679999999999999986 888876544 689999999999998853 334444
No 55
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-40 Score=273.40 Aligned_cols=327 Identities=30% Similarity=0.502 Sum_probs=289.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCC-CCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP-GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~-~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+|.+.+|.++++++++-.+-||||||.++++++++.+.... .+.+.++++|+++|+.|+.+-.+.+.... +++...+.
T Consensus 47 iqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ 125 (529)
T KOG0337|consen 47 IQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT-KLRQSLLV 125 (529)
T ss_pred hhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-chhhhhhc
Confidence 68999999999999999999999999999999999887665 34589999999999999999888887765 88888888
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
|+....++-..+... +||+++||..++...-.-.+.++.+.+||+||++.+.. .+|...+.+++..++...|.+++||
T Consensus 126 ggD~~eeqf~~l~~n-pDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfe-mgfqeql~e~l~rl~~~~QTllfSa 203 (529)
T KOG0337|consen 126 GGDSIEEQFILLNEN-PDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFE-MGFQEQLHEILSRLPESRQTLLFSA 203 (529)
T ss_pred ccchHHHHHHHhccC-CCEEEecCceeeeeehheeccccceeeeeehhhhHHHh-hhhHHHHHHHHHhCCCcceEEEEec
Confidence 888888777777655 59999999999876655557788999999999999988 8999999999999999999999999
Q ss_pred cCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc-CCCeEEEEecchhhHHHHHHHHH
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLV 238 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivf~~~~~~~~~~~~~l~ 238 (356)
|+|..+-++.+..+.+|..+..+... .........++.+...++...+..++... ..+.+++|+++...++.+...|.
T Consensus 204 tlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~ 282 (529)
T KOG0337|consen 204 TLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLR 282 (529)
T ss_pred cCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHH
Confidence 99999999999999999888754443 33444566677788888888888888766 44679999999999999999999
Q ss_pred hCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEE
Q 018420 239 ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI 318 (356)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~ 318 (356)
..|..+..++|.+++..|...+..|+.++..+|+.|+.+.+|+|+|-.+.||.|+.|.+..-|.+|+||+.|.|..|.+|
T Consensus 283 ~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aY 362 (529)
T KOG0337|consen 283 DFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAY 362 (529)
T ss_pred hcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCChHHHH
Q 018420 319 TFVSSASDSDILN 331 (356)
Q Consensus 319 ~~~~~~~~~~~~~ 331 (356)
.++.+.+.....+
T Consensus 363 s~V~~~~~~yl~D 375 (529)
T KOG0337|consen 363 SLVASTDDPYLLD 375 (529)
T ss_pred EEEecccchhhhh
Confidence 9999776665544
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.8e-39 Score=295.15 Aligned_cols=307 Identities=18% Similarity=0.214 Sum_probs=220.3
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHh---------HHHhhcCc---CCCCCCeeEEEEcCchHHHHHHHHHHHHHhc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVF---------VLSTLQQT---EPNPGQVTALVLCHTRELAYQICHEFERFST 68 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~---------~~~~~~~~---~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~ 68 (356)
+|.++++.+.++++++++|+||||||.+. +++.+..+ .......++++++|+++|+.|+..++.+..+
T Consensus 168 iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 168 VQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999872 22223322 2122334799999999999999999887664
Q ss_pred c--CCCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHh
Q 018420 69 Y--LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 146 (356)
Q Consensus 69 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~ 146 (356)
. ..+..+...+|+.......... ...+++++|+... ...++++++||+||||+..... ..+..+..
T Consensus 248 ~~~~~g~~v~v~~Gg~~~~~~~t~~--k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~---DllL~llk 315 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPDELINTNP--KPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG---DIIIAVAR 315 (675)
T ss_pred ccccCCceEEEEECCcchHHhhccc--CCCCEEEEeCccc-------ccccccCCEEEccccccCccch---hHHHHHHH
Confidence 4 3466788888887622111111 2358999997531 1246789999999999986533 23333332
Q ss_pred hC-CCCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcC----------hhHHHHHHHHHHhc-
Q 018420 147 MT-PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS----------ELEKNRKLNDLLDA- 214 (356)
Q Consensus 147 ~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~- 214 (356)
.. +...|+++||||++++...+ ..++.+|..+.+.... ...+.+.+.... ...+...+..+...
T Consensus 316 ~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt---~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 316 KHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGT---LFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCc---CCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 22 23358999999998877665 6778888777664321 122333333221 11122222222222
Q ss_pred -cCCCeEEEEecchhhHHHHHHHHHhC--CCCeEEEecCCCHHHHHHHHHHh-hcCCCcEEEEcCccccCCCCCCCCEEE
Q 018420 215 -LDFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGF-KEGNKRILVATDLVGRGIDIERVNIVI 290 (356)
Q Consensus 215 -~~~~~~ivf~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~vlv~t~~~~~G~d~~~~~~vi 290 (356)
..++.+|||+++.+.++.+++.|.+. +..+..+||++++. .+.++.| ++|+.+|||||+++++|+|+|++++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 23468999999999999999999987 68899999999985 3455666 689999999999999999999999999
Q ss_pred Eec---CCC---------ChhhhhhccccccCCCCcceEEEEEccCCC
Q 018420 291 NYD---MPD---------SADTYLHRVGRAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 291 ~~~---~~~---------s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 326 (356)
+++ .|. |..++.||.||+||. ++|.|+.+++....
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 998 454 888999999999998 79999999986543
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.1e-39 Score=284.42 Aligned_cols=298 Identities=20% Similarity=0.275 Sum_probs=199.6
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHH-------
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKI------- 86 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~------- 86 (356)
++++.+|||||||.+++.+++..+...... +++|++|+++|+.|+.+++..+++. .++.+++......
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~-~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKAD-RVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCC-eEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCc
Confidence 478999999999999999988776543333 8999999999999999999987632 3444454332110
Q ss_pred ----hH-HH-Hhc----CCCcEEEechHHHHHHHhcCC----cc--cCCccEEEEeccccccccccchhHHHHHHhhC-C
Q 018420 87 ----HK-DL-LKN----ECPQIVVGTPGRILALARDKD----LS--LKNVRHFILDECDKMLESLDMRRDVQEIFKMT-P 149 (356)
Q Consensus 87 ----~~-~~-~~~----~~~~i~v~T~~~l~~~~~~~~----~~--~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~ 149 (356)
.. .. ... ....|+++||++++..+.... .. .-..++||+||+|.+... .+.. +..+...+ .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~-l~~~l~~l~~ 153 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY-TLAL-ILAVLEVLKD 153 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH-HHHH-HHHHHHHHHH
Confidence 00 00 010 125799999999988665421 11 112378999999998752 2222 33333333 3
Q ss_pred CCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEE--EEcChhHHHHHHHHHHhcc-CCCeEEEEecc
Q 018420 150 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY--IKLSELEKNRKLNDLLDAL-DFNQVVIFVKS 226 (356)
Q Consensus 150 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~ivf~~~ 226 (356)
.+.|++++|||+++....+.......+........ ... ......+ .......+...+..+++.. .++++||||++
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t 231 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-EER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNT 231 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-ccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECC
Confidence 46889999999987666555544332211111100 000 0001111 1111112333444444432 46899999999
Q ss_pred hhhHHHHHHHHHhCCC--CeEEEecCCCHHHHHH----HHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhh
Q 018420 227 VSRAAELNKLLVECNF--PSICIHSGMSQEERLT----RYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADT 300 (356)
Q Consensus 227 ~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~----~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~ 300 (356)
++.++.++..|.+.+. .+..+||++++.+|.+ +++.|++++.++||||+++++|+|++ ++.+|.+..| ..+
T Consensus 232 ~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~ 308 (358)
T TIGR01587 232 VDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDS 308 (358)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHH
Confidence 9999999999998765 4889999999999876 48899999999999999999999995 7888877544 789
Q ss_pred hhhccccccCCCCcc----eEEEEEcc
Q 018420 301 YLHRVGRAGRFGTKG----LAITFVSS 323 (356)
Q Consensus 301 ~~Q~~GR~~R~~~~~----~~~~~~~~ 323 (356)
|+||+||+||.|+.+ .++++...
T Consensus 309 ~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 309 LIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHhccccCCCCCCCCCCeEEEEeec
Confidence 999999999987643 45555553
No 58
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.4e-37 Score=291.21 Aligned_cols=300 Identities=19% Similarity=0.263 Sum_probs=226.3
Q ss_pred ccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcc
Q 018420 4 ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 83 (356)
Q Consensus 4 ~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~ 83 (356)
+.+.++.+++++++.||||||||+++.+++++..... .+++++.|++.++.|.++++.+..+...+..++...++..
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~---~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~ 88 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGIN---GKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES 88 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcC---CeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc
Confidence 4566677789999999999999999998888764322 2799999999999999999876554444667777766544
Q ss_pred hHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch-hHHHHHHhhCCCCCcEEEEEecCc
Q 018420 84 IKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~-~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
... ...+|+|+|+..+++.+.. ...++++++||+||+|...-..+.. ..+..+....+++.++++||||++
T Consensus 89 ~~~-------~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~ 160 (812)
T PRK11664 89 KVG-------PNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD 160 (812)
T ss_pred ccC-------CCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCC
Confidence 221 2258999999999987765 4568999999999999753223332 223445555667889999999998
Q ss_pred cchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHH-----HHHHHHhccCCCeEEEEecchhhHHHHHHHH
Q 018420 163 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNR-----KLNDLLDALDFNQVVIFVKSVSRAAELNKLL 237 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l 237 (356)
.. .+..++.++..+..... . ..+...|.......+.. .+..++.. ..+.+|||+++.+.++.+++.|
T Consensus 161 ~~---~l~~~~~~~~~I~~~gr-~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L 232 (812)
T PRK11664 161 ND---RLQQLLPDAPVIVSEGR-S---FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQL 232 (812)
T ss_pred HH---HHHHhcCCCCEEEecCc-c---ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHH
Confidence 54 23556655544443322 1 12334444333322221 23333332 3588999999999999999999
Q ss_pred Hh---CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC------------------
Q 018420 238 VE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------------ 296 (356)
Q Consensus 238 ~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~------------------ 296 (356)
.+ .+..+..+||++++.+|.+.+..|++|+.+|||||+++++|+|+|++++||+++.+.
T Consensus 233 ~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 312 (812)
T PRK11664 233 ASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRI 312 (812)
T ss_pred HHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEee
Confidence 97 467888899999999999999999999999999999999999999999999987653
Q ss_pred ChhhhhhccccccCCCCcceEEEEEcc
Q 018420 297 SADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 297 s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
|..++.||.||+||. .+|.|+.+++.
T Consensus 313 Skasa~QR~GRaGR~-~~G~cyrL~t~ 338 (812)
T PRK11664 313 SQASMTQRAGRAGRL-EPGICLHLYSK 338 (812)
T ss_pred chhhhhhhccccCCC-CCcEEEEecCH
Confidence 446899999999998 69999999985
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.6e-37 Score=291.65 Aligned_cols=300 Identities=19% Similarity=0.243 Sum_probs=224.6
Q ss_pred ccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcc
Q 018420 4 ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 83 (356)
Q Consensus 4 ~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~ 83 (356)
+.+..+.++++++++|+||||||+++..++++.... ..+++++.|++.++.|.++++....+...+..+++......
T Consensus 9 ~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 9 ALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 456667778999999999999999999998877632 23899999999999999999875554433566666555432
Q ss_pred hHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhH-HHHHHhhCCCCCcEEEEEecCc
Q 018420 84 IKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD-VQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~-~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
. .+..++|.|+|+..+++.+.+ ...++++++||+||+|...-..++... +..+....+++.++++||||++
T Consensus 86 ~-------~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~ 157 (819)
T TIGR01970 86 K-------VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLD 157 (819)
T ss_pred c-------cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCC
Confidence 1 122368999999999987765 456899999999999963222444332 3445555677899999999998
Q ss_pred cchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHH-----HHHHHHHHhccCCCeEEEEecchhhHHHHHHHH
Q 018420 163 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK-----NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL 237 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l 237 (356)
... +..++.++..+..... . ..+...|.......+ ...+..++.. ..+.+|||+++.+.++.+++.|
T Consensus 158 ~~~---l~~~l~~~~vI~~~gr-~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L 229 (819)
T TIGR01970 158 GER---LSSLLPDAPVVESEGR-S---FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQL 229 (819)
T ss_pred HHH---HHHHcCCCcEEEecCc-c---eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHH
Confidence 642 4556665544433221 1 122333443322222 1223333333 3578999999999999999999
Q ss_pred Hh---CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC------------------
Q 018420 238 VE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------------ 296 (356)
Q Consensus 238 ~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~------------------ 296 (356)
.+ .++.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.+.
T Consensus 230 ~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~i 309 (819)
T TIGR01970 230 AERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRI 309 (819)
T ss_pred HhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEE
Confidence 87 367888999999999999999999999999999999999999999999999998764
Q ss_pred ChhhhhhccccccCCCCcceEEEEEcc
Q 018420 297 SADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 297 s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
|..++.||.||+||. .+|.|+.+++.
T Consensus 310 Skasa~QR~GRAGR~-~~G~cyrL~t~ 335 (819)
T TIGR01970 310 SQASATQRAGRAGRL-EPGVCYRLWSE 335 (819)
T ss_pred CHHHHHhhhhhcCCC-CCCEEEEeCCH
Confidence 345689999999998 79999999985
No 60
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.3e-37 Score=279.28 Aligned_cols=314 Identities=22% Similarity=0.325 Sum_probs=222.3
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|.+.+...+ +++++|++|||+|||++++..+++++...+++ ++++++|++.|+.|+.+.+..++.. ..+....|+
T Consensus 67 Q~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~-KiVF~aP~~pLv~QQ~a~~~~~~~~---~~~T~~l~~ 141 (746)
T KOG0354|consen 67 QEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKG-KVVFLAPTRPLVNQQIACFSIYLIP---YSVTGQLGD 141 (746)
T ss_pred HHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcc-eEEEeeCCchHHHHHHHHHhhccCc---ccceeeccC
Confidence 556666667 99999999999999999999999999988886 8999999999999998777666532 345555555
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcc-cCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLS-LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~-~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
.........+... .+|+++||+.+.+-+..+... ++.+.++||||||+....+.+...+...........|++++|||
T Consensus 142 ~~~~~~r~~i~~s-~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTAS 220 (746)
T KOG0354|consen 142 TVPRSNRGEIVAS-KRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTAS 220 (746)
T ss_pred ccCCCchhhhhcc-cceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecC
Confidence 3333333333333 499999999999877765544 58899999999999998777777777777776666699999999
Q ss_pred CccchHHHHHh---hcCC----------------------CeEEE----------------------------------e
Q 018420 161 LSKEIRPVCKK---FMQD----------------------PMEIY----------------------------------V 181 (356)
Q Consensus 161 ~~~~~~~~~~~---~~~~----------------------~~~~~----------------------------------~ 181 (356)
|..+....... +... |..+. .
T Consensus 221 pG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~ 300 (746)
T KOG0354|consen 221 PGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTS 300 (746)
T ss_pred CCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCcccccccccc
Confidence 96542211111 0000 00000 0
Q ss_pred ccc-----cccccccc--eEE--E-----------------EE--------------c----------------------
Q 018420 182 DDE-----AKLTLHGL--VQH--Y-----------------IK--------------L---------------------- 199 (356)
Q Consensus 182 ~~~-----~~~~~~~~--~~~--~-----------------~~--------------~---------------------- 199 (356)
... ........ .+. + +. .
T Consensus 301 ~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m 380 (746)
T KOG0354|consen 301 YEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENM 380 (746)
T ss_pred ccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHH
Confidence 000 00000000 000 0 00 0
Q ss_pred ----------C-hhHHHHHHHHHH----hccCCCeEEEEecchhhHHHHHHHHHh---CCCCeEEEec--------CCCH
Q 018420 200 ----------S-ELEKNRKLNDLL----DALDFNQVVIFVKSVSRAAELNKLLVE---CNFPSICIHS--------GMSQ 253 (356)
Q Consensus 200 ----------~-~~~~~~~~~~~~----~~~~~~~~ivf~~~~~~~~~~~~~l~~---~~~~~~~~~~--------~~~~ 253 (356)
+ +..+...+..++ ...+..++|||+.+++.|..+..+|.. .+++..++-| +|++
T Consensus 381 ~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtq 460 (746)
T KOG0354|consen 381 NELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQ 460 (746)
T ss_pred HhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCH
Confidence 0 000111111111 223456899999999999999999883 2556665544 6899
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEcc
Q 018420 254 EERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 254 ~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
.++.++++.|++|+++|||||++++||+|++.|+.||-|+...|+..++||.|| ||. +.|.++.++..
T Consensus 461 k~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~ 528 (746)
T KOG0354|consen 461 KEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTG 528 (746)
T ss_pred HHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999999 996 57778777773
No 61
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.8e-37 Score=280.35 Aligned_cols=308 Identities=18% Similarity=0.173 Sum_probs=210.0
Q ss_pred ccccHhhHhc-C--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 2 QHECIPQAIL-G--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 2 Q~~~~~~~~~-~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
|++|+..+.. + ++.++++|||+|||++.+.++... . .++||+||+..|++||.+++.++.... ...+..+
T Consensus 260 Q~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-~-----k~tLILvps~~Lv~QW~~ef~~~~~l~-~~~I~~~ 332 (732)
T TIGR00603 260 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-K-----KSCLVLCTSAVSVEQWKQQFKMWSTID-DSQICRF 332 (732)
T ss_pred HHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-C-----CCEEEEeCcHHHHHHHHHHHHHhcCCC-CceEEEE
Confidence 8889988875 3 478999999999999877655443 1 169999999999999999999886442 4566677
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc--------CCcccCCccEEEEeccccccccccchhHHHHHHhhCCC
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARD--------KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 150 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~ 150 (356)
.|+..... .....|+|+|++++.....+ ..+....+++||+||||++.. ..+.++...+.
T Consensus 333 tg~~k~~~------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA-----~~fr~il~~l~- 400 (732)
T TIGR00603 333 TSDAKERF------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA-----AMFRRVLTIVQ- 400 (732)
T ss_pred ecCccccc------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH-----HHHHHHHHhcC-
Confidence 76532211 11248999999988543221 112235688999999998854 34444554443
Q ss_pred CCcEEEEEecCccchH--HHHHhhcCCCeEEEeccccccccccceEEE--------------------------EEcChh
Q 018420 151 DKQVMMFSATLSKEIR--PVCKKFMQDPMEIYVDDEAKLTLHGLVQHY--------------------------IKLSEL 202 (356)
Q Consensus 151 ~~~~i~~SaT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 202 (356)
....+++||||..... ..+..+++ |........+......+.... ....+.
T Consensus 401 a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np 479 (732)
T TIGR00603 401 AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNP 479 (732)
T ss_pred cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhCh
Confidence 3458999999964321 11222222 222211111100000000000 001122
Q ss_pred HHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcC-CCcEEEEcCcccc
Q 018420 203 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NKRILVATDLVGR 279 (356)
Q Consensus 203 ~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~vlv~t~~~~~ 279 (356)
.+...+..+++.+ .+.++||||.+.+.+..++..|. +..++|.+++.+|.++++.|+.| .+++||+|+++.+
T Consensus 480 ~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgde 554 (732)
T TIGR00603 480 NKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDT 554 (732)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEeccccc
Confidence 3344444455544 66899999999999998888773 45689999999999999999875 7899999999999
Q ss_pred CCCCCCCCEEEEecCC-CChhhhhhccccccCCCCcceE-------EEEEccCCChHHHHHHH
Q 018420 280 GIDIERVNIVINYDMP-DSADTYLHRVGRAGRFGTKGLA-------ITFVSSASDSDILNQVQ 334 (356)
Q Consensus 280 G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~~~~~-------~~~~~~~~~~~~~~~~~ 334 (356)
|+|+|.+++||+++.| .|..+|+||+||++|.+..+.+ +.+++.+..+.....=+
T Consensus 555 GIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~R 617 (732)
T TIGR00603 555 SIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKR 617 (732)
T ss_pred ccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHH
Confidence 9999999999999987 5999999999999998766553 67777666655543333
No 62
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=288.67 Aligned_cols=310 Identities=23% Similarity=0.303 Sum_probs=222.5
Q ss_pred ccccHhhHh-cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 2 QHECIPQAI-LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
|+.++.... +++|++|++|||||||++++++++..+.++. .+++|+||+++|+++.++++.++.. + |++|...+|
T Consensus 36 qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~--~k~vYivPlkALa~Ek~~~~~~~~~-~-GirV~~~Tg 111 (766)
T COG1204 36 QQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGG--GKVVYIVPLKALAEEKYEEFSRLEE-L-GIRVGISTG 111 (766)
T ss_pred HHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcC--CcEEEEeChHHHHHHHHHHhhhHHh-c-CCEEEEecC
Confidence 445555554 4699999999999999999999999988762 2799999999999999999984433 3 999999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHH---hhCCCCCcEEEE
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF---KMTPHDKQVMMF 157 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~---~~~~~~~~~i~~ 157 (356)
+..... +.+.. ++|+|+||+++-.+.++....+..+++|||||+|.+.+. .....+..+. .......+++++
T Consensus 112 D~~~~~--~~l~~--~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~-~RG~~lE~iv~r~~~~~~~~rivgL 186 (766)
T COG1204 112 DYDLDD--ERLAR--YDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR-TRGPVLESIVARMRRLNELIRIVGL 186 (766)
T ss_pred Ccccch--hhhcc--CCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc-ccCceehhHHHHHHhhCcceEEEEE
Confidence 766443 22222 599999999999999988878889999999999999763 2333333332 222344799999
Q ss_pred EecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcCh-------hHHHHHHHHHHhcc-CCCeEEEEecchhh
Q 018420 158 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-------LEKNRKLNDLLDAL-DFNQVVIFVKSVSR 229 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~ivf~~~~~~ 229 (356)
|||+++. .+++.++..++....+..............+..... ......+....... .+++++|||+++..
T Consensus 187 SATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~ 265 (766)
T COG1204 187 SATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKE 265 (766)
T ss_pred eeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCch
Confidence 9999964 666666665554222222222222222222222221 12222333333333 55799999999999
Q ss_pred HHHHHHHHHhC-------------------------------------CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEE
Q 018420 230 AAELNKLLVEC-------------------------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILV 272 (356)
Q Consensus 230 ~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv 272 (356)
+...++.+... ...+.++|++++..+|..+.+.|+.|.++||+
T Consensus 266 a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv 345 (766)
T COG1204 266 AEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLV 345 (766)
T ss_pred HHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEE
Confidence 99999888830 01356789999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEE----Eec-----CCCChhhhhhccccccCCCC--cceEEEEE
Q 018420 273 ATDLVGRGIDIERVNIVI----NYD-----MPDSADTYLHRVGRAGRFGT--KGLAITFV 321 (356)
Q Consensus 273 ~t~~~~~G~d~~~~~~vi----~~~-----~~~s~~~~~Q~~GR~~R~~~--~~~~~~~~ 321 (356)
||++++.|+|+|.-.++| .++ .+-+.-++.|++||+||.|- .|.++++.
T Consensus 346 ~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 346 STPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred echHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 999999999999655555 233 23467789999999999765 35566665
No 63
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4.4e-36 Score=261.26 Aligned_cols=292 Identities=17% Similarity=0.179 Sum_probs=199.0
Q ss_pred ccccHhhHhcCCc--EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccC---CCceEE
Q 018420 2 QHECIPQAILGMD--VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL---PDIKVA 76 (356)
Q Consensus 2 Q~~~~~~~~~~~~--~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~---~~~~v~ 76 (356)
|.++++++.++++ +++++|||+|||.+++++++... .++++++|+++|++|+.++++++...+ .+..+.
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~------~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGE------NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcC------CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 8999999998764 78999999999999998888531 168999999999999999999887543 245666
Q ss_pred EEEcCcchH--Hh-----------------HHHHhcCCCcEEEechHHHHHHHhcCCc--------ccCCccEEEEeccc
Q 018420 77 VFYGGVNIK--IH-----------------KDLLKNECPQIVVGTPGRILALARDKDL--------SLKNVRHFILDECD 129 (356)
Q Consensus 77 ~~~~~~~~~--~~-----------------~~~~~~~~~~i~v~T~~~l~~~~~~~~~--------~~~~~~~viiDE~H 129 (356)
.+.|....+ .. +.......+.|++|||+.|..+++.... .+.++++||+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 666652221 00 1112234578999999999766543211 24788999999999
Q ss_pred ccccccc--ch--hHHHHHHhhCCCCCcEEEEEecCccchHHHHHhh--cCCCeEEEecccccc----------------
Q 018420 130 KMLESLD--MR--RDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF--MQDPMEIYVDDEAKL---------------- 187 (356)
Q Consensus 130 ~~~~~~~--~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------------- 187 (356)
.+..+.. .. .....+........+++++|||+++.....+... .+.+...........
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 9865321 11 1222222322334689999999998766666654 444433322220000
Q ss_pred -ccccceEEEEEcChhHHHHHHH-------HHHhccCCCeEEEEecchhhHHHHHHHHHhCC--CCeEEEecCCCHHHHH
Q 018420 188 -TLHGLVQHYIKLSELEKNRKLN-------DLLDALDFNQVVIFVKSVSRAAELNKLLVECN--FPSICIHSGMSQEERL 257 (356)
Q Consensus 188 -~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~ 257 (356)
....+...+.. ....+...+. +.++...+++++|||++++.++.+++.|++.+ ..+..+||.+++.+|.
T Consensus 236 ~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~ 314 (357)
T TIGR03158 236 PVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRE 314 (357)
T ss_pred eeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHH
Confidence 00122223322 2222222222 22223356799999999999999999999864 5677899999998886
Q ss_pred HHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhcccccc
Q 018420 258 TRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAG 309 (356)
Q Consensus 258 ~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 309 (356)
+. ++.+|||||+++++|+|+|.. .|| ++ |.+...|+||+||+|
T Consensus 315 ~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 315 RA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred Hh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 44 478899999999999999876 555 45 889999999999996
No 64
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=1.4e-35 Score=285.14 Aligned_cols=316 Identities=22% Similarity=0.338 Sum_probs=224.2
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|.+++..++.+ ++++++|||+|||+++++.+...+. .+++ +++|++|+++|+.|+.+.++++.+.. ...+..+.|+
T Consensus 20 Q~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~-~~~~-~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~~g~ 95 (773)
T PRK13766 20 QQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH-KKGG-KVLILAPTKPLVEQHAEFFRKFLNIP-EEKIVVFTGE 95 (773)
T ss_pred HHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH-hCCC-eEEEEeCcHHHHHHHHHHHHHHhCCC-CceEEEEeCC
Confidence 56666665555 8999999999999988777776653 2223 89999999999999999999876442 4578888887
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
.........+.. .+|+|+||+.+...+....+.+.++++||+||||++.+...+...+.... .....+.++++||||
T Consensus 96 ~~~~~r~~~~~~--~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~-~~~~~~~il~lTaTP 172 (773)
T PRK13766 96 VSPEKRAELWEK--AKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYH-EDAKNPLVLGLTASP 172 (773)
T ss_pred CCHHHHHHHHhC--CCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHH-hcCCCCEEEEEEcCC
Confidence 665543333333 48999999999887777788888999999999999976444444444433 333456799999998
Q ss_pred ccchH---HHHHhhcCCCeEEEe------------------cc--ccc------------------------c-ccc---
Q 018420 162 SKEIR---PVCKKFMQDPMEIYV------------------DD--EAK------------------------L-TLH--- 190 (356)
Q Consensus 162 ~~~~~---~~~~~~~~~~~~~~~------------------~~--~~~------------------------~-~~~--- 190 (356)
..... ....++......+.. .. ... . ...
T Consensus 173 ~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~ 252 (773)
T PRK13766 173 GSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDV 252 (773)
T ss_pred CCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCc
Confidence 54322 112221111100000 00 000 0 000
Q ss_pred ----------cceEEEE---------------------------------------------------------------
Q 018420 191 ----------GLVQHYI--------------------------------------------------------------- 197 (356)
Q Consensus 191 ----------~~~~~~~--------------------------------------------------------------- 197 (356)
.+.....
T Consensus 253 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~ 332 (773)
T PRK13766 253 SKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRF 332 (773)
T ss_pred CHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHH
Confidence 0000000
Q ss_pred ---------EcChhHHHHHHHHHHhc----cCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecC--------CCHHHH
Q 018420 198 ---------KLSELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG--------MSQEER 256 (356)
Q Consensus 198 ---------~~~~~~~~~~~~~~~~~----~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~~~~ 256 (356)
......+...+..++.. ..++++||||++...+..+.+.|...++.+..++|. +++.+|
T Consensus 333 ~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r 412 (773)
T PRK13766 333 RKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQ 412 (773)
T ss_pred HHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHH
Confidence 00001122233333322 466899999999999999999999999999999876 888999
Q ss_pred HHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCC
Q 018420 257 LTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 325 (356)
Q Consensus 257 ~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 325 (356)
..++..|++|+.++||+|+++++|+|+|.+++||+|+++++...++||+||+||.+. +.+++++..+.
T Consensus 413 ~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 413 IEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred HHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999864 77777766443
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=4e-36 Score=283.40 Aligned_cols=315 Identities=24% Similarity=0.327 Sum_probs=242.5
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCC-CceEEEEEc
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP-DIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~-~~~v~~~~~ 80 (356)
|.+|+..+.+|++++|..|||||||.+|++++++.+...+.. +.|++.|+++|++++.++++++....+ ++.+..++|
T Consensus 75 Q~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~G 153 (851)
T COG1205 75 QVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTG 153 (851)
T ss_pred HHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecC
Confidence 889999999999999999999999999999999999988877 799999999999999999999998886 578888888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHH-hc---CCcccCCccEEEEecccccccccc--ch---hHHHHHHhhCCCC
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALA-RD---KDLSLKNVRHFILDECDKMLESLD--MR---RDVQEIFKMTPHD 151 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~-~~---~~~~~~~~~~viiDE~H~~~~~~~--~~---~~~~~~~~~~~~~ 151 (356)
+....... .+....++|++|||+++-..+ .+ +.+.++.+++||+||+|.+-+-.+ .. +.+..+....+.+
T Consensus 154 dt~~~~r~-~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~ 232 (851)
T COG1205 154 DTPPEERR-AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSP 232 (851)
T ss_pred CCChHHHH-HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCC
Confidence 77765554 444555899999999997633 32 334477799999999999865322 12 3344445555678
Q ss_pred CcEEEEEecCccchHHHHHhhcCCCeEEE-eccccccccccceEEEEEcC------h---hHHHHHHHHHHhcc--CCCe
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQDPMEIY-VDDEAKLTLHGLVQHYIKLS------E---LEKNRKLNDLLDAL--DFNQ 219 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~~~~~--~~~~ 219 (356)
.|+|++|||.... .+....+.+...... .........+ ......+ . .........+.... .+-+
T Consensus 233 ~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~---~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~ 308 (851)
T COG1205 233 LQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLR---YFVRREPPIRELAESIRRSALAELATLAALLVRNGIQ 308 (851)
T ss_pred ceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCce---EEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCce
Confidence 9999999999865 566777766665552 2222221111 2222222 1 12222222222222 4468
Q ss_pred EEEEecchhhHHHHH----HHHHhCC----CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEE
Q 018420 220 VVIFVKSVSRAAELN----KLLVECN----FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 291 (356)
Q Consensus 220 ~ivf~~~~~~~~~~~----~~l~~~~----~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~ 291 (356)
+|+|+.++..++.+. ..+...+ ..+..+++++...+|.++...|+.|+..++++|++++.|+|+.+++.||.
T Consensus 309 tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~ 388 (851)
T COG1205 309 TLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIA 388 (851)
T ss_pred EEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhh
Confidence 999999999999996 4444445 56777899999999999999999999999999999999999999999999
Q ss_pred ecCCC-ChhhhhhccccccCCCCcceEEEEEc
Q 018420 292 YDMPD-SADTYLHRVGRAGRFGTKGLAITFVS 322 (356)
Q Consensus 292 ~~~~~-s~~~~~Q~~GR~~R~~~~~~~~~~~~ 322 (356)
.+.|. +..++.|+.||+||.++.+..+++..
T Consensus 389 ~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 389 YGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred cCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999 99999999999999987776665555
No 66
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.6e-37 Score=255.63 Aligned_cols=316 Identities=16% Similarity=0.240 Sum_probs=237.8
Q ss_pred CccccHhhHhc-CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+|++|+..+.+ ++++.|++|||+||+++|.++++..-. -+++++|..+|+..+.+-+.++ .+++..+.
T Consensus 24 LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~g------ITIV~SPLiALIkDQiDHL~~L-----KVp~~SLN 92 (641)
T KOG0352|consen 24 LQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGG------ITIVISPLIALIKDQIDHLKRL-----KVPCESLN 92 (641)
T ss_pred HHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCC------eEEEehHHHHHHHHHHHHHHhc-----CCchhHhc
Confidence 58888888876 579999999999999999999887654 5899999999999998888766 56666777
Q ss_pred cCcchHHhHHHHh-----cCCCcEEEechHHHHHHHh----cCCcccCCccEEEEecccccccc-ccchhHHHHHHhhCC
Q 018420 80 GGVNIKIHKDLLK-----NECPQIVVGTPGRILALAR----DKDLSLKNVRHFILDECDKMLES-LDMRRDVQEIFKMTP 149 (356)
Q Consensus 80 ~~~~~~~~~~~~~-----~~~~~i~v~T~~~l~~~~~----~~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~~~~~~~ 149 (356)
+.....+....+. .....+++.||++...-.. +.-..-..+.++++||||..+.| ++|+..+.++.....
T Consensus 93 SKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS 172 (641)
T KOG0352|consen 93 SKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS 172 (641)
T ss_pred chhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh
Confidence 6666555544332 1335789999987643222 22233456788999999999987 888888776654322
Q ss_pred --CCCcEEEEEecCccchHHHHHh--hcCCCeEEEeccccccccccceEEEEEcC----hhHHHHHHHHHHh--------
Q 018420 150 --HDKQVMMFSATLSKEIRPVCKK--FMQDPMEIYVDDEAKLTLHGLVQHYIKLS----ELEKNRKLNDLLD-------- 213 (356)
Q Consensus 150 --~~~~~i~~SaT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------- 213 (356)
+..+.+++|||.+..+.+-+.. .+.+|+.++....-. .+.+.... -.+....+.++..
T Consensus 173 ~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR------~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~ 246 (641)
T KOG0352|consen 173 VCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR------DNLFYDNHMKSFITDCLTVLADFSSSNLGKHEK 246 (641)
T ss_pred hCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh------hhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhh
Confidence 4567999999998877655433 355665544322211 01110000 0011111222211
Q ss_pred -----ccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCE
Q 018420 214 -----ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNI 288 (356)
Q Consensus 214 -----~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~ 288 (356)
....+..||||.+++++++++-.|...|+....||.++...+|.++.+.|-++++.|+++|...+.|+|-|++..
T Consensus 247 ~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRF 326 (641)
T KOG0352|consen 247 ASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRF 326 (641)
T ss_pred hhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeE
Confidence 113367999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHH
Q 018420 289 VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 334 (356)
Q Consensus 289 vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~ 334 (356)
||+++++.|..-|.|-.||+||.|.+..|-++++. ++.+.+..+.
T Consensus 327 ViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR-~D~~~i~FLi 371 (641)
T KOG0352|consen 327 VIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSR-QDKNALNFLV 371 (641)
T ss_pred EEecCchhhhHHHHHhccccccCCCccceeeeecc-cchHHHHHHH
Confidence 99999999999999999999999999999999994 5555555443
No 67
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.6e-35 Score=287.51 Aligned_cols=292 Identities=23% Similarity=0.308 Sum_probs=217.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.++.|++++++||||+|||..++..+. .+.. .+.+++|++||++|+.|+.+.++.+.... ++.+..+.+
T Consensus 84 iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~-~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~~~~-~~~~~~~~g 159 (1176)
T PRK09401 84 LQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSL-YLAK--KGKKSYIIFPTRLLVEQVVEKLEKFGEKV-GCGVKILYY 159 (1176)
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHH-HHHh--cCCeEEEEeccHHHHHHHHHHHHHHhhhc-CceEEEEEc
Confidence 5999999999999999999999999965443332 2222 23489999999999999999999998765 667766666
Q ss_pred Ccch-----HHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc----------ccch-hHHHHH
Q 018420 81 GVNI-----KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----------LDMR-RDVQEI 144 (356)
Q Consensus 81 ~~~~-----~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~----------~~~~-~~~~~~ 144 (356)
+... ....+.+..+.++|+|+||+.+..++. .+....++++|+||||++..+ .+|. ..+..+
T Consensus 160 ~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i 237 (1176)
T PRK09401 160 HSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKA 237 (1176)
T ss_pred cCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHH
Confidence 5442 222334455567999999999988776 344566999999999999752 2443 344444
Q ss_pred HhhCCC------------------------CCcEEEEEecCccc-hHHHHHhhcCCCeEEEeccccccccccceEEEEEc
Q 018420 145 FKMTPH------------------------DKQVMMFSATLSKE-IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL 199 (356)
Q Consensus 145 ~~~~~~------------------------~~~~i~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (356)
+..++. ..|++++|||+++. ... .++.++..+.+... ....+++.+.+...
T Consensus 238 ~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~-~~~~rnI~~~yi~~ 313 (1176)
T PRK09401 238 MELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSP-VFYLRNIVDSYIVD 313 (1176)
T ss_pred HHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCc-ccccCCceEEEEEc
Confidence 444432 67899999999864 332 12233333333222 23445566666655
Q ss_pred ChhHHHHHHHHHHhccCCCeEEEEecchhh---HHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEE---
Q 018420 200 SELEKNRKLNDLLDALDFNQVVIFVKSVSR---AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA--- 273 (356)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~--- 273 (356)
. .+...+..+++... .++||||++.+. ++.+++.|...|+++..+||++ .+.++.|++|+++||||
T Consensus 314 ~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas 385 (1176)
T PRK09401 314 E--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDVLVGVAS 385 (1176)
T ss_pred c--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecC
Confidence 4 45556667776654 579999999777 9999999999999999999998 23359999999999999
Q ss_pred -cCccccCCCCCC-CCEEEEecCCC------ChhhhhhccccccC
Q 018420 274 -TDLVGRGIDIER-VNIVINYDMPD------SADTYLHRVGRAGR 310 (356)
Q Consensus 274 -t~~~~~G~d~~~-~~~vi~~~~~~------s~~~~~Q~~GR~~R 310 (356)
|+.+++|+|+|+ ++.||+++.|. ....+.+++||+..
T Consensus 386 ~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 386 YYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 689999999999 89999999998 66788999999964
No 68
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=2.9e-35 Score=262.21 Aligned_cols=288 Identities=20% Similarity=0.249 Sum_probs=201.8
Q ss_pred CccccHhhHhc----CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEE
Q 018420 1 MQHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 1 ~Q~~~~~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~ 76 (356)
.|++|+.++.+ ++..++++|||+|||.+++..+..... +++|+||+++|+.||.+.+..+... ...++
T Consensus 40 yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~--~~~~g 111 (442)
T COG1061 40 YQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLL--NDEIG 111 (442)
T ss_pred HHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCC--ccccc
Confidence 38999999998 889999999999999887666666554 4999999999999999887776533 12455
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEE
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 156 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~ 156 (356)
.+.|+...... ..|.|+|.+++...........+.+++||+|||||... ..+..+...+.....+++
T Consensus 112 ~~~~~~~~~~~--------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a-----~~~~~~~~~~~~~~~~LG 178 (442)
T COG1061 112 IYGGGEKELEP--------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA-----PSYRRILELLSAAYPRLG 178 (442)
T ss_pred eecCceeccCC--------CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc-----HHHHHHHHhhhcccceee
Confidence 55554332111 26999999999874211223334789999999998865 233333333333233999
Q ss_pred EEecCccchH---HHHHhhcCCCeEEEeccccccccccceEEE---EEc-------------------------------
Q 018420 157 FSATLSKEIR---PVCKKFMQDPMEIYVDDEAKLTLHGLVQHY---IKL------------------------------- 199 (356)
Q Consensus 157 ~SaT~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------------------- 199 (356)
+||||+.... ..+....+ |........+......+.... ...
T Consensus 179 LTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (442)
T COG1061 179 LTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAEN 257 (442)
T ss_pred eccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHH
Confidence 9999864321 11112221 222221111111101000000 000
Q ss_pred -------ChhHHHHHHHHHHhcc-CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEE
Q 018420 200 -------SELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 271 (356)
Q Consensus 200 -------~~~~~~~~~~~~~~~~-~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vl 271 (356)
....+...+..++..+ .+.+++||+.+..++..++..+...+. +..+.+..+..+|..+++.|+.|++++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~l 336 (442)
T COG1061 258 EARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVL 336 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 0111222333333333 467999999999999999999998877 8889999999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCC
Q 018420 272 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 311 (356)
Q Consensus 272 v~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 311 (356)
+++.++.+|+|+|+++++|+.++..|...|+||+||+.|.
T Consensus 337 v~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 337 VTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999999999999994
No 69
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.2e-34 Score=262.22 Aligned_cols=309 Identities=21% Similarity=0.207 Sum_probs=230.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|..+++.++.|+ +..+.||+|||+++.++++.....++ .+++++|+++|+.|.++.+..+...+ ++.++.+.|
T Consensus 107 VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~---~v~VvTptreLA~qdae~~~~l~~~l-Glsv~~i~g 180 (656)
T PRK12898 107 VQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGL---PVHVITVNDYLAERDAELMRPLYEAL-GLTVGCVVE 180 (656)
T ss_pred HHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCC---eEEEEcCcHHHHHHHHHHHHHHHhhc-CCEEEEEeC
Confidence 5888999999998 99999999999999999998765543 79999999999999999999998877 899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHH-HHHHhcCC-------------------------cccCCccEEEEecccccccc
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD-------------------------LSLKNVRHFILDECDKMLES 134 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~-------------------------~~~~~~~~viiDE~H~~~~~ 134 (356)
+.+... .....+ ++|+++|...| +.+++... .-.+.+.+.||||++.+.=+
T Consensus 181 g~~~~~--r~~~y~-~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiD 257 (656)
T PRK12898 181 DQSPDE--RRAAYG-ADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLID 257 (656)
T ss_pred CCCHHH--HHHHcC-CCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccceeec
Confidence 876432 222233 59999999887 44444331 11356788999999988500
Q ss_pred --------------c---cchhH--------------------------------HHHHHhh------------------
Q 018420 135 --------------L---DMRRD--------------------------------VQEIFKM------------------ 147 (356)
Q Consensus 135 --------------~---~~~~~--------------------------------~~~~~~~------------------ 147 (356)
. ..... +..+...
T Consensus 258 eartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~A 337 (656)
T PRK12898 258 EARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQA 337 (656)
T ss_pred cCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHH
Confidence 0 00000 0000000
Q ss_pred ------CCCC-------------------------------------------------------------CcEEEEEec
Q 018420 148 ------TPHD-------------------------------------------------------------KQVMMFSAT 160 (356)
Q Consensus 148 ------~~~~-------------------------------------------------------------~~~i~~SaT 160 (356)
+..+ .++.+||||
T Consensus 338 l~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGT 417 (656)
T PRK12898 338 LSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGT 417 (656)
T ss_pred HHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCc
Confidence 0000 046778888
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHH
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLV 238 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~ 238 (356)
.+....++...+..++..+...... .......++......+...+...+... .+.++||||++.+.++.++..|.
T Consensus 418 a~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~ 494 (656)
T PRK12898 418 AREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLR 494 (656)
T ss_pred ChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH
Confidence 8876666666666666544333322 222334455566677777788777664 35789999999999999999999
Q ss_pred hCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCC---CCC-----EEEEecCCCChhhhhhccccccC
Q 018420 239 ECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE---RVN-----IVINYDMPDSADTYLHRVGRAGR 310 (356)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R 310 (356)
+.|+++..+||.++..+ ..+..++.+...|+|||+++++|+|++ .+. +||.++.|.|...|.|++||+||
T Consensus 495 ~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGR 572 (656)
T PRK12898 495 EAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGR 572 (656)
T ss_pred HCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccC
Confidence 99999999999865444 445556666667999999999999999 555 99999999999999999999999
Q ss_pred CCCcceEEEEEcc
Q 018420 311 FGTKGLAITFVSS 323 (356)
Q Consensus 311 ~~~~~~~~~~~~~ 323 (356)
.|.+|.++.+++.
T Consensus 573 qG~~G~s~~~is~ 585 (656)
T PRK12898 573 QGDPGSYEAILSL 585 (656)
T ss_pred CCCCeEEEEEech
Confidence 9999999999985
No 70
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=267.64 Aligned_cols=324 Identities=22% Similarity=0.281 Sum_probs=227.1
Q ss_pred CccccHhhHhc-CCcEEEEccCCCccchHhHHHhhcCcCC-------CCCCeeEEEEcCchHHHHHHHHHHHHHhccCCC
Q 018420 1 MQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEP-------NPGQVTALVLCHTRELAYQICHEFERFSTYLPD 72 (356)
Q Consensus 1 ~Q~~~~~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~-------~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~ 72 (356)
+|.+++|.+.+ +.|+|||||||||||.++++++++.+.+ .++..|++||+|+++|+..+.+.+.+-+..+ |
T Consensus 114 iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~-g 192 (1230)
T KOG0952|consen 114 IQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL-G 192 (1230)
T ss_pred HHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc-c
Confidence 68899998876 6799999999999999999999987764 2355699999999999999999888777766 8
Q ss_pred ceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC---CcccCCccEEEEeccccccccccchhHHHHH-----
Q 018420 73 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK---DLSLKNVRHFILDECDKMLESLDMRRDVQEI----- 144 (356)
Q Consensus 73 ~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~---~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~----- 144 (356)
+.+..++|+....... +.. ++|+|+||+.+--.-++. ...++.+++||+||+|.+-++ ....+..+
T Consensus 193 i~v~ELTGD~ql~~te--i~~--tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~--RGpvlEtiVaRtl 266 (1230)
T KOG0952|consen 193 ISVRELTGDTQLTKTE--IAD--TQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD--RGPVLETIVARTL 266 (1230)
T ss_pred ceEEEecCcchhhHHH--HHh--cCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc--ccchHHHHHHHHH
Confidence 9999999987765544 232 599999999983222211 123667899999999998553 23333322
Q ss_pred --HhhCCCCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChh---HHHH-----HHHHHHhc
Q 018420 145 --FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL---EKNR-----KLNDLLDA 214 (356)
Q Consensus 145 --~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~ 214 (356)
........+++++|||+|+ ..+.+.++--+|..-.........+..+.+.+.-.+.. .... ......+.
T Consensus 267 r~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~ 345 (1230)
T KOG0952|consen 267 RLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEF 345 (1230)
T ss_pred HHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHH
Confidence 2333456789999999996 35555555444333222222233333334443322211 1111 11222222
Q ss_pred c-CCCeEEEEecchhhHHHHHHHHHhC----C-------------------CCeEEEecCCCHHHHHHHHHHhhcCCCcE
Q 018420 215 L-DFNQVVIFVKSVSRAAELNKLLVEC----N-------------------FPSICIHSGMSQEERLTRYKGFKEGNKRI 270 (356)
Q Consensus 215 ~-~~~~~ivf~~~~~~~~~~~~~l~~~----~-------------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~v 270 (356)
. .+.+++|||.++..+...++.|.+. | .....+|+++...+|.-..+.|..|.++|
T Consensus 346 ~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~v 425 (1230)
T KOG0952|consen 346 LQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKV 425 (1230)
T ss_pred HHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceE
Confidence 2 5579999999999999998888763 1 12445789999999999999999999999
Q ss_pred EEEcCccccCCCCCCCCEEEEecCC-----------CChhhhhhccccccCC--CCcceEEEEEccCCChHHHHHH
Q 018420 271 LVATDLVGRGIDIERVNIVINYDMP-----------DSADTYLHRVGRAGRF--GTKGLAITFVSSASDSDILNQV 333 (356)
Q Consensus 271 lv~t~~~~~G~d~~~~~~vi~~~~~-----------~s~~~~~Q~~GR~~R~--~~~~~~~~~~~~~~~~~~~~~~ 333 (356)
|+||..+++|+|+| +.+||+-+.+ .+..+.+|.+||+||. +..|.++++++.+.-..++..+
T Consensus 426 L~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 426 LCCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred EEecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 99999999999998 5555555432 2566789999999994 4567778877765444443333
No 71
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=1.4e-34 Score=286.58 Aligned_cols=303 Identities=19% Similarity=0.249 Sum_probs=227.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCC-CceEEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP-DIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~-~~~v~~~~ 79 (356)
+|.++++.+++|+++++.||||+|||++++.+++..... +.++++++|+++|+.|+.+.++.+..... ++.+..++
T Consensus 83 iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~---g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~ 159 (1638)
T PRK14701 83 IQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALK---GKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYH 159 (1638)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhc---CCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEe
Confidence 599999999999999999999999998655554443222 23799999999999999999999876541 46778888
Q ss_pred cCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc----------ccchhHHHH---
Q 018420 80 GGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----------LDMRRDVQE--- 143 (356)
Q Consensus 80 ~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~----------~~~~~~~~~--- 143 (356)
|+.....+.. .+.++.++|+|+||+.+...+... ...+++++|+||||+++.+ .+|...+..
T Consensus 160 g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~ 237 (1638)
T PRK14701 160 SNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAW 237 (1638)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHH
Confidence 8877665533 345566899999999887765532 1267899999999999753 255554432
Q ss_pred -HHh----------------------hCCCCCc-EEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEc
Q 018420 144 -IFK----------------------MTPHDKQ-VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL 199 (356)
Q Consensus 144 -~~~----------------------~~~~~~~-~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (356)
+.. ..+...+ .+.+|||++.. .....++.++..+.+.. .....+.+.+.+...
T Consensus 238 ~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~~-~~~~lr~i~~~yi~~ 314 (1638)
T PRK14701 238 KIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVGS-GRSALRNIVDVYLNP 314 (1638)
T ss_pred HhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEecC-CCCCCCCcEEEEEEC
Confidence 211 2233444 57799999863 11223345555554433 334556667777655
Q ss_pred ChhHHHHHHHHHHhccCCCeEEEEecchhh---HHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEc--
Q 018420 200 SELEKNRKLNDLLDALDFNQVVIFVKSVSR---AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-- 274 (356)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t-- 274 (356)
....+ ..+..+++.. +..+||||++.+. |+.+++.|.+.|+++..+|++ |...++.|++|+++|||||
T Consensus 315 ~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s 387 (1638)
T PRK14701 315 EKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVAT 387 (1638)
T ss_pred CHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCCEEEEecC
Confidence 54444 4566667665 4689999999775 589999999999999999985 8889999999999999999
Q ss_pred --CccccCCCCCC-CCEEEEecCCC---Chhhhhhcc-------------ccccCCCCcceEE
Q 018420 275 --DLVGRGIDIER-VNIVINYDMPD---SADTYLHRV-------------GRAGRFGTKGLAI 318 (356)
Q Consensus 275 --~~~~~G~d~~~-~~~vi~~~~~~---s~~~~~Q~~-------------GR~~R~~~~~~~~ 318 (356)
+.+++|+|+|+ +..||+++.|. +...+.|.. ||++|.|.+..++
T Consensus 388 ~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 388 YYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred CCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 47899999998 99999999998 777666655 9999999877665
No 72
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=9.7e-35 Score=249.65 Aligned_cols=312 Identities=21% Similarity=0.235 Sum_probs=231.9
Q ss_pred ccccHhh-HhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 2 QHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
|.-|+++ ++.|++.+|+.+|+||||++.-++.+..+....+ +.+++||..+|++|-.++|++-...+ ++.+.+-.|
T Consensus 221 Q~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~--KmlfLvPLVALANQKy~dF~~rYs~L-glkvairVG 297 (830)
T COG1202 221 QVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGK--KMLFLVPLVALANQKYEDFKERYSKL-GLKVAIRVG 297 (830)
T ss_pred hhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCC--eEEEEehhHHhhcchHHHHHHHhhcc-cceEEEEec
Confidence 5555555 3579999999999999999988887777665333 79999999999999999998655555 777777666
Q ss_pred CcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc---ccchhHHHHHHhhCCCCCcE
Q 018420 81 GVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES---LDMRRDVQEIFKMTPHDKQV 154 (356)
Q Consensus 81 ~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~---~~~~~~~~~~~~~~~~~~~~ 154 (356)
......... .-....+||+|+|++.+-.+++.+ ..+.+++.|||||+|.+.+. ...-..+.++...+ +..|+
T Consensus 298 ~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~-~~AQ~ 375 (830)
T COG1202 298 MSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF-PGAQF 375 (830)
T ss_pred hhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC-CCCeE
Confidence 544333221 112344799999999997777766 56789999999999998763 11223344444444 58999
Q ss_pred EEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc--------CCCeEEEEecc
Q 018420 155 MMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--------DFNQVVIFVKS 226 (356)
Q Consensus 155 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~ivf~~~ 226 (356)
|++|||..++ .++++.+..+.+..... +.+.. .+-.+...+.++.+.+..+.+.. -.+++|||+++
T Consensus 376 i~LSATVgNp-~elA~~l~a~lV~y~~R---PVplE--rHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~S 449 (830)
T COG1202 376 IYLSATVGNP-EELAKKLGAKLVLYDER---PVPLE--RHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYS 449 (830)
T ss_pred EEEEeecCCh-HHHHHHhCCeeEeecCC---CCChh--HeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecc
Confidence 9999999865 55666654444332111 11111 23334444667777777776432 45789999999
Q ss_pred hhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEE---Eec-CCCChhhhh
Q 018420 227 VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI---NYD-MPDSADTYL 302 (356)
Q Consensus 227 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi---~~~-~~~s~~~~~ 302 (356)
+..+..++..|...|+++..||++++..+|+.+..+|.++++.++|+|.+++.|+|+|.-.+++ -++ ...|+.+|.
T Consensus 450 Rrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~ 529 (830)
T COG1202 450 RRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQ 529 (830)
T ss_pred hhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998543322 122 235999999
Q ss_pred hccccccCCC--CcceEEEEEccC
Q 018420 303 HRVGRAGRFG--TKGLAITFVSSA 324 (356)
Q Consensus 303 Q~~GR~~R~~--~~~~~~~~~~~~ 324 (356)
|+.||+||.+ ..|.+++++.++
T Consensus 530 QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 530 QMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHhcccCCCCcccCceEEEEecCC
Confidence 9999999965 357888887764
No 73
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.8e-35 Score=274.32 Aligned_cols=314 Identities=20% Similarity=0.222 Sum_probs=240.5
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|.+++...+.|++.+|.+|||.||+++|.++++..-. -+++|.|..+|++.+...+... ++....+.++
T Consensus 269 Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~g------itvVISPL~SLm~DQv~~L~~~-----~I~a~~L~s~ 337 (941)
T KOG0351|consen 269 QLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGG------VTVVISPLISLMQDQVTHLSKK-----GIPACFLSSI 337 (941)
T ss_pred HHHHHHHHHcCCceEEEeecCCceeeEeeccccccCC------ceEEeccHHHHHHHHHHhhhhc-----Ccceeecccc
Confidence 8899999999999999999999999999887776544 6899999999999887766332 7888888887
Q ss_pred cchHHhH---HHHhcC--CCcEEEechHHHHHHHh--cCCcccCC---ccEEEEecccccccc-ccchhHHHHHHhhCC-
Q 018420 82 VNIKIHK---DLLKNE--CPQIVVGTPGRILALAR--DKDLSLKN---VRHFILDECDKMLES-LDMRRDVQEIFKMTP- 149 (356)
Q Consensus 82 ~~~~~~~---~~~~~~--~~~i~v~T~~~l~~~~~--~~~~~~~~---~~~viiDE~H~~~~~-~~~~~~~~~~~~~~~- 149 (356)
....... ..+..+ ..+|++.||+++..... .....+.. +.++||||||..+.| ++|+..+.++.....
T Consensus 338 q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~ 417 (941)
T KOG0351|consen 338 QTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR 417 (941)
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh
Confidence 7664333 233444 56899999999865221 11222333 678999999999988 788887766653322
Q ss_pred -CCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcC-hhHHHHHHHHHHhccCCCeEEEEecch
Q 018420 150 -HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLNDLLDALDFNQVVIFVKSV 227 (356)
Q Consensus 150 -~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ivf~~~~ 227 (356)
+..+++++|||....+..-+-..++-+........ ....++.-.+..-. .......+...-.......+||||.++
T Consensus 418 ~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--fnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr 495 (941)
T KOG0351|consen 418 FPGVPFIALTATATERVREDVIRSLGLRNPELFKSS--FNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSR 495 (941)
T ss_pred CCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc--CCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCc
Confidence 34679999999988776665555443322222111 11122222222222 122223333333445778999999999
Q ss_pred hhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhcccc
Q 018420 228 SRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGR 307 (356)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR 307 (356)
..++.++..|...++....||++|+..+|..+-..|-.++++|++||=+.+.|+|-|++..||+++.|.|...|.|-.||
T Consensus 496 ~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GR 575 (941)
T KOG0351|consen 496 KECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGR 575 (941)
T ss_pred chHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEEEEccCCChH
Q 018420 308 AGRFGTKGLAITFVSSASDSD 328 (356)
Q Consensus 308 ~~R~~~~~~~~~~~~~~~~~~ 328 (356)
+||.|.+..|++|+...+..+
T Consensus 576 AGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 576 AGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred cCcCCCcceeEEecchhHHHH
Confidence 999999999999999864433
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=9.7e-34 Score=261.72 Aligned_cols=309 Identities=19% Similarity=0.217 Sum_probs=222.7
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|..+...+.+|+ +..+.||+|||+++.++++.....++ .+.+++|++.|+.|.++.+..+...+ ++.++.+.|+
T Consensus 83 Ql~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~---~v~VvTpt~~LA~qd~e~~~~l~~~l-Gl~v~~i~g~ 156 (790)
T PRK09200 83 QLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGK---GVHLITVNDYLAKRDAEEMGQVYEFL-GLTVGLNFSD 156 (790)
T ss_pred HHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCC---CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCC
Confidence 445555566665 99999999999999998886555444 68999999999999999999998887 9999999998
Q ss_pred cchHHhHHHHhcCCCcEEEechHHH-HHHHhcCC------cccCCccEEEEecccccccc---------------ccchh
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES---------------LDMRR 139 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~------~~~~~~~~viiDE~H~~~~~---------------~~~~~ 139 (356)
.+.....+.... ++|+++|+..+ +.+++... ...+.+.++|+||+|.+.=+ .....
T Consensus 157 ~~~~~~r~~~y~--~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~ 234 (790)
T PRK09200 157 IDDASEKKAIYE--ADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYH 234 (790)
T ss_pred CCcHHHHHHhcC--CCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCccccHHHH
Confidence 884433443332 69999999888 44444322 24578899999999998600 00000
Q ss_pred HHHHHHhhCCC--------------------------------------------------------C------------
Q 018420 140 DVQEIFKMTPH--------------------------------------------------------D------------ 151 (356)
Q Consensus 140 ~~~~~~~~~~~--------------------------------------------------------~------------ 151 (356)
....+...+.. +
T Consensus 235 ~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~i 314 (790)
T PRK09200 235 IAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVL 314 (790)
T ss_pred HHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEE
Confidence 00000000000 0
Q ss_pred -------------------------------------------------CcEEEEEecCccchHHHHHhhcCCCeEEEec
Q 018420 152 -------------------------------------------------KQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 182 (356)
Q Consensus 152 -------------------------------------------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 182 (356)
.++.+||+|......++ ...++-+.. .+.
T Consensus 315 vD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~-~~~Y~l~v~-~IP 392 (790)
T PRK09200 315 VDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF-FEVYNMEVV-QIP 392 (790)
T ss_pred EECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-HHHhCCcEE-ECC
Confidence 03566777765433333 222332222 222
Q ss_pred cccccccccceEEEEEcChhHHHHHHHHHHhc--cCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHH
Q 018420 183 DEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRY 260 (356)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (356)
.. ....+......+......+...+...+.. ..+.++||||++.+.++.++..|.+.|+++..+|+.+.+.++..+.
T Consensus 393 t~-kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~ 471 (790)
T PRK09200 393 TN-RPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIA 471 (790)
T ss_pred CC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHH
Confidence 22 22222222333444556677777776654 3678999999999999999999999999999999999888887777
Q ss_pred HHhhcCCCcEEEEcCccccCCCC---CCCC-----EEEEecCCCChhhhhhccccccCCCCcceEEEEEcc
Q 018420 261 KGFKEGNKRILVATDLVGRGIDI---ERVN-----IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 261 ~~f~~~~~~vlv~t~~~~~G~d~---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
..+..| .|+|||+++++|+|+ |.+. +||.++.|.|...|.||+||+||.|.+|.++.+++.
T Consensus 472 ~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~ 540 (790)
T PRK09200 472 EAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISL 540 (790)
T ss_pred HcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcc
Confidence 666655 699999999999999 6888 999999999999999999999999999999999985
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.5e-33 Score=258.16 Aligned_cols=312 Identities=18% Similarity=0.180 Sum_probs=218.8
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|.|++..+.-++..++.++||+|||+++.++++.....++ .++|++|+++|+.|+++.+..+...+ ++.+....++
T Consensus 73 dVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~---~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~~~~~~ 148 (762)
T TIGR03714 73 DVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGK---GAMLVTTNDYLAKRDAEEMGPVYEWL-GLTVSLGVVD 148 (762)
T ss_pred HHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCC---ceEEeCCCHHHHHHHHHHHHHHHhhc-CCcEEEEECC
Confidence 3445555555555799999999999999999876555433 58999999999999999998888777 8888887765
Q ss_pred cc---hHHhHHHHhcCCCcEEEechHHH-HHHHhc------CCcccCCccEEEEeccccccccc---------------c
Q 018420 82 VN---IKIHKDLLKNECPQIVVGTPGRI-LALARD------KDLSLKNVRHFILDECDKMLESL---------------D 136 (356)
Q Consensus 82 ~~---~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~------~~~~~~~~~~viiDE~H~~~~~~---------------~ 136 (356)
.. .......... .++|+++||..| +.++.. ....++.+.++|+||||.+.-+. .
T Consensus 149 s~~~~~~~~~rr~~y-~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~ 227 (762)
T TIGR03714 149 DPDEEYDANEKRKIY-NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSN 227 (762)
T ss_pred CCccccCHHHHHHhC-CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchH
Confidence 22 2212222222 369999999999 454432 23446789999999999995100 0
Q ss_pred chhHHHHHHhhCCC--------------------------------------------------------C---------
Q 018420 137 MRRDVQEIFKMTPH--------------------------------------------------------D--------- 151 (356)
Q Consensus 137 ~~~~~~~~~~~~~~--------------------------------------------------------~--------- 151 (356)
.......+...+.+ +
T Consensus 228 ~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~ 307 (762)
T TIGR03714 228 LYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGE 307 (762)
T ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCE
Confidence 00000000000000 0
Q ss_pred ----------------------------------------------------CcEEEEEecCccchHHHHHhhcCCCeEE
Q 018420 152 ----------------------------------------------------KQVMMFSATLSKEIRPVCKKFMQDPMEI 179 (356)
Q Consensus 152 ----------------------------------------------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~ 179 (356)
.++.+||+|......++... ++-+. +
T Consensus 308 v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i-Y~l~v-~ 385 (762)
T TIGR03714 308 VVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET-YSLSV-V 385 (762)
T ss_pred EEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH-hCCCE-E
Confidence 04666777765444444332 22222 1
Q ss_pred EeccccccccccceEEEEEcChhHHHHHHHHHHhc--cCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHH
Q 018420 180 YVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERL 257 (356)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 257 (356)
.+... ...........+......+...+...+.. ..+.++||||++++.++.+...|.+.|+++..+|+.+.+.++.
T Consensus 386 ~IPt~-kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ 464 (762)
T TIGR03714 386 KIPTN-KPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQ 464 (762)
T ss_pred EcCCC-CCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHH
Confidence 22222 12222223334455566677777776655 3678999999999999999999999999999999999988887
Q ss_pred HHHHHhhcCCCcEEEEcCccccCCCCC---------CCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccC
Q 018420 258 TRYKGFKEGNKRILVATDLVGRGIDIE---------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 258 ~~~~~f~~~~~~vlv~t~~~~~G~d~~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
.+...++.| .|+|||+++++|+|++ ++.+|+.++.|....+ .||.||+||.|.+|.++.+++..
T Consensus 465 ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 465 IIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred HHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccc
Confidence 776666655 6999999999999999 8899999999987766 99999999999999999999863
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=1.3e-33 Score=256.89 Aligned_cols=309 Identities=20% Similarity=0.235 Sum_probs=222.4
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|..+...+..|+ +..++||+|||+++.++++.....+. .+.+++|+..|+.|.++++..+...+ ++.+..+.|+
T Consensus 61 Qlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~---~V~VvTpt~~LA~qdae~~~~l~~~L-GLsv~~i~g~ 134 (745)
T TIGR00963 61 QLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGK---GVHVVTVNDYLAQRDAEWMGQVYRFL-GLSVGLILSG 134 (745)
T ss_pred HHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCC---CEEEEcCCHHHHHHHHHHHHHHhccC-CCeEEEEeCC
Confidence 444445555554 99999999999999988854333333 58999999999999999999998887 8999999998
Q ss_pred cchHHhHHHHhcCCCcEEEechHHH-HHHHhcC------CcccCCccEEEEecccccccc--------cc-------chh
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLES--------LD-------MRR 139 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~viiDE~H~~~~~--------~~-------~~~ 139 (356)
.+......... ++|+++||..| +.+++.+ ...++.+.++|+||+|.+.-+ .+ ...
T Consensus 135 ~~~~~r~~~y~---~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~ 211 (745)
T TIGR00963 135 MSPEERREAYA---CDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYL 211 (745)
T ss_pred CCHHHHHHhcC---CCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHH
Confidence 87654443332 59999999999 7777765 345788999999999999610 00 000
Q ss_pred --------------------------------HHHHHH---------------------h---hCCCC------------
Q 018420 140 --------------------------------DVQEIF---------------------K---MTPHD------------ 151 (356)
Q Consensus 140 --------------------------------~~~~~~---------------------~---~~~~~------------ 151 (356)
.+..++ . .+..+
T Consensus 212 ~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~i 291 (745)
T TIGR00963 212 QANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVI 291 (745)
T ss_pred HHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEE
Confidence 000000 0 00000
Q ss_pred -------------------------------------------------CcEEEEEecCccchHHHHHhhcCCCeEEEec
Q 018420 152 -------------------------------------------------KQVMMFSATLSKEIRPVCKKFMQDPMEIYVD 182 (356)
Q Consensus 152 -------------------------------------------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 182 (356)
.++.+||+|......++.. .++-+... +.
T Consensus 292 vD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~-iY~l~vv~-IP 369 (745)
T TIGR00963 292 VDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEK-IYNLEVVV-VP 369 (745)
T ss_pred EECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHH-HhCCCEEE-eC
Confidence 0356677776544333333 23332222 22
Q ss_pred cccccccccceEEEEEcChhHHHHHHHHHHhc--cCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHH
Q 018420 183 DEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRY 260 (356)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (356)
...+.. +......+......+...+...+.. ..+.|+||||++++.++.+++.|.+.|++...+|++ +.+|...+
T Consensus 370 tnkp~~-R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~i 446 (745)
T TIGR00963 370 TNRPVI-RKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEI 446 (745)
T ss_pred CCCCee-eeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHH
Confidence 222211 1112223333444555555554422 267899999999999999999999999999999998 77888889
Q ss_pred HHhhcCCCcEEEEcCccccCCCCCC-------CCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccC
Q 018420 261 KGFKEGNKRILVATDLVGRGIDIER-------VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 261 ~~f~~~~~~vlv~t~~~~~G~d~~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
..|+.+...|+|||+++++|+|++. ..+||.++.|.|...+.|+.||+||.|.+|.+..+++..
T Consensus 447 i~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 447 IAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred HHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 9999999999999999999999998 459999999999999999999999999999999999964
No 77
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.6e-32 Score=243.21 Aligned_cols=316 Identities=21% Similarity=0.251 Sum_probs=234.9
Q ss_pred ccccHhhHhcC------CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 2 QHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 2 Q~~~~~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
|++++..|... .+=++.+..|||||.+++++++..+..+. .+...+||.-|++|.++++.+++..+ ++++
T Consensus 267 Q~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPTEILA~QH~~~~~~~l~~~-~i~V 342 (677)
T COG1200 267 QKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPTEILAEQHYESLRKWLEPL-GIRV 342 (677)
T ss_pred HHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccHHHHHHHHHHHHHHHhhhc-CCeE
Confidence 67777777652 23489999999999999999999988776 57888999999999999999999887 8999
Q ss_pred EEEEcCcchHHh---HHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCC
Q 018420 76 AVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 152 (356)
Q Consensus 76 ~~~~~~~~~~~~---~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 152 (356)
..+.|...-... ...+.++..+++|+|+.-+ .+...+.++.+||+||=|++.. ..+..+..-... .+
T Consensus 343 ~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHRFGV--~QR~~L~~KG~~---~P 412 (677)
T COG1200 343 ALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHRFGV--HQRLALREKGEQ---NP 412 (677)
T ss_pred EEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccccccH--HHHHHHHHhCCC---CC
Confidence 999997765444 3456678899999998877 4667788999999999998843 222222222111 57
Q ss_pred cEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc-CCCeEEEEecchhh--
Q 018420 153 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSR-- 229 (356)
Q Consensus 153 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivf~~~~~~-- 229 (356)
.++.|||||-+. .++...+++-. +..-.+.+...+.+........ .....+..+.++. .++++.+.||-+++
T Consensus 413 h~LvMTATPIPR--TLAlt~fgDld-vS~IdElP~GRkpI~T~~i~~~--~~~~v~e~i~~ei~~GrQaY~VcPLIeESE 487 (677)
T COG1200 413 HVLVMTATPIPR--TLALTAFGDLD-VSIIDELPPGRKPITTVVIPHE--RRPEVYERIREEIAKGRQAYVVCPLIEESE 487 (677)
T ss_pred cEEEEeCCCchH--HHHHHHhcccc-chhhccCCCCCCceEEEEeccc--cHHHHHHHHHHHHHcCCEEEEEeccccccc
Confidence 799999999774 33444444432 2222333333333333333322 1222222222222 66889999987654
Q ss_pred ------HHHHHHHHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCC-CChhh
Q 018420 230 ------AAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP-DSADT 300 (356)
Q Consensus 230 ------~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~-~s~~~ 300 (356)
|..+++.|+.. +.++..+||.|+.+++.+++.+|++|+++|||||.++++|+|+|+++.+++.++- ....+
T Consensus 488 ~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQ 567 (677)
T COG1200 488 KLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQ 567 (677)
T ss_pred cchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHH
Confidence 45666777754 5668899999999999999999999999999999999999999999999988754 57888
Q ss_pred hhhccccccCCCCcceEEEEEccCCChHHHHHHHHH
Q 018420 301 YLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQAR 336 (356)
Q Consensus 301 ~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (356)
+=|..||+||.+.++.|+.++.+...+.-.++++..
T Consensus 568 LHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im 603 (677)
T COG1200 568 LHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIM 603 (677)
T ss_pred HHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHH
Confidence 999999999999999999999977655545555543
No 78
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.3e-33 Score=251.13 Aligned_cols=293 Identities=20% Similarity=0.211 Sum_probs=195.8
Q ss_pred EEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhH---HHHh
Q 018420 16 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLK 92 (356)
Q Consensus 16 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~ 92 (356)
+++||||||||.+++..+...+..+. ++++++|+++|+.|+.+++++.+ +..+..++++....+.. ....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~---~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGK---SVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHH
Confidence 57899999999998766655554433 79999999999999999998765 45788888876654432 2234
Q ss_pred cCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch-----hHHHHHHhhCCCCCcEEEEEecCccchHH
Q 018420 93 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-----RDVQEIFKMTPHDKQVMMFSATLSKEIRP 167 (356)
Q Consensus 93 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 167 (356)
.+..+|+|+|+..++ ..+.++++|||||.|....+.... +.+...... ..+.+++++||||+.+...
T Consensus 74 ~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 74 NGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPSLESYH 145 (505)
T ss_pred cCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCCHHHHH
Confidence 566799999998775 357889999999999887532211 223333333 3567899999998765433
Q ss_pred HHHhhcCCCeEEEeccccccccccceEEEEEcChhH-----HHHHHHHHHhcc-CCCeEEEEecchhh------------
Q 018420 168 VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-----KNRKLNDLLDAL-DFNQVVIFVKSVSR------------ 229 (356)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~ivf~~~~~~------------ 229 (356)
.+.. +............ ........+....... ....+..+.+.. .++++|+|+|++..
T Consensus 146 ~~~~--g~~~~~~l~~r~~-~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 146 NAKQ--KAYRLLVLTRRVS-GRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred HHhc--CCeEEeechhhhc-CCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 3321 1111111110000 0000011111111110 112222222333 34689999776543
Q ss_pred ------------------------------------------------HHHHHHHHHhC--CCCeEEEecCCCHHHH--H
Q 018420 230 ------------------------------------------------AAELNKLLVEC--NFPSICIHSGMSQEER--L 257 (356)
Q Consensus 230 ------------------------------------------------~~~~~~~l~~~--~~~~~~~~~~~~~~~~--~ 257 (356)
.+.+.+.|++. +.++..+|++++...+ .
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 46777778776 6788889998876554 8
Q ss_pred HHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC------------ChhhhhhccccccCCCCcceEEEEEccCC
Q 018420 258 TRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------SADTYLHRVGRAGRFGTKGLAITFVSSAS 325 (356)
Q Consensus 258 ~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 325 (356)
.+++.|++|+.+|||+|++++.|+|+|+++.|++++... ....+.|++||+||.+++|.+++.+...+
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 899999999999999999999999999999987666432 23568999999999999999887765443
Q ss_pred C
Q 018420 326 D 326 (356)
Q Consensus 326 ~ 326 (356)
+
T Consensus 383 ~ 383 (505)
T TIGR00595 383 H 383 (505)
T ss_pred C
Confidence 3
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.3e-32 Score=255.11 Aligned_cols=306 Identities=21% Similarity=0.217 Sum_probs=208.2
Q ss_pred ccccHhhHhcC---CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 2 QHECIPQAILG---MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 2 Q~~~~~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
|+++++.+.++ ++.++.++||||||.+|+.++...+..+. ++++++|+++|+.|+.+++++.+ +..+..+
T Consensus 149 Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~---~vLvLvPt~~L~~Q~~~~l~~~f----g~~v~~~ 221 (679)
T PRK05580 149 QAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGK---QALVLVPEIALTPQMLARFRARF----GAPVAVL 221 (679)
T ss_pred HHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHHHHHHHHHh----CCCEEEE
Confidence 78889998873 78999999999999999877766665432 79999999999999999998754 5688899
Q ss_pred EcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch-----hHHHHHHhhCCC
Q 018420 79 YGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-----RDVQEIFKMTPH 150 (356)
Q Consensus 79 ~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~-----~~~~~~~~~~~~ 150 (356)
+|+.+.....+ ....+..+|+|+|+..++ ..+.++++||+||+|......... +.+... .....
T Consensus 222 ~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~-ra~~~ 293 (679)
T PRK05580 222 HSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV-RAKLE 293 (679)
T ss_pred ECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHH-Hhhcc
Confidence 98876544332 234456799999998775 457889999999999876432211 222222 23345
Q ss_pred CCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChh--------HHHHHHHHHHhcc-CCCeEE
Q 018420 151 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL--------EKNRKLNDLLDAL-DFNQVV 221 (356)
Q Consensus 151 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~i 221 (356)
+.+++++||||+......+.. +....+....... ............... -....+..+.+.. .+++++
T Consensus 294 ~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~-~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvl 370 (679)
T PRK05580 294 NIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAG-GARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVL 370 (679)
T ss_pred CCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccc-cCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEE
Confidence 788999999988654433321 1111111111100 000001111111000 0012222222222 335788
Q ss_pred EEecch------------------------------------------------------------hhHHHHHHHHHhC-
Q 018420 222 IFVKSV------------------------------------------------------------SRAAELNKLLVEC- 240 (356)
Q Consensus 222 vf~~~~------------------------------------------------------------~~~~~~~~~l~~~- 240 (356)
+|+|.+ ..++.+++.|++.
T Consensus 371 l~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f 450 (679)
T PRK05580 371 LFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF 450 (679)
T ss_pred EEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC
Confidence 877642 2456777777775
Q ss_pred -CCCeEEEecCCC--HHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC------------Chhhhhhcc
Q 018420 241 -NFPSICIHSGMS--QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------SADTYLHRV 305 (356)
Q Consensus 241 -~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~ 305 (356)
+.++..+|+++. +.++.++++.|++|+.+|||+|++++.|+|+|+++.|++++... ....+.|++
T Consensus 451 p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~ 530 (679)
T PRK05580 451 PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVA 530 (679)
T ss_pred CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHH
Confidence 678888998875 46788999999999999999999999999999999998776542 235689999
Q ss_pred ccccCCCCcceEEEEEccCC
Q 018420 306 GRAGRFGTKGLAITFVSSAS 325 (356)
Q Consensus 306 GR~~R~~~~~~~~~~~~~~~ 325 (356)
||+||.+++|.+++.....+
T Consensus 531 GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 531 GRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred hhccCCCCCCEEEEEeCCCC
Confidence 99999999999988776443
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.3e-31 Score=253.66 Aligned_cols=330 Identities=17% Similarity=0.191 Sum_probs=209.3
Q ss_pred ccccHhhHhc--CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 2 QHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
|..++..+.. ...+++...+|.|||..+.+.+...+..+... +++||||. +|..||..++.+.+ ++....+.
T Consensus 157 Ql~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~-rvLIVvP~-sL~~QW~~El~~kF----~l~~~i~~ 230 (956)
T PRK04914 157 QLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAE-RVLILVPE-TLQHQWLVEMLRRF----NLRFSLFD 230 (956)
T ss_pred HHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCC-cEEEEcCH-HHHHHHHHHHHHHh----CCCeEEEc
Confidence 3444444433 35789999999999987655554444433333 79999997 89999999997654 44555554
Q ss_pred cCcchHHhHHH-HhcCCCcEEEechHHHHHHH-hcCCcccCCccEEEEeccccccccccc-hhHHHHHHhhCCCCCcEEE
Q 018420 80 GGVNIKIHKDL-LKNECPQIVVGTPGRILALA-RDKDLSLKNVRHFILDECDKMLESLDM-RRDVQEIFKMTPHDKQVMM 156 (356)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~i~v~T~~~l~~~~-~~~~~~~~~~~~viiDE~H~~~~~~~~-~~~~~~~~~~~~~~~~~i~ 156 (356)
++......... ......+++|+|++.+.... ....+.-..+++||+||||++....+. ...+..+.........+++
T Consensus 231 ~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LL 310 (956)
T PRK04914 231 EERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLL 310 (956)
T ss_pred CcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEE
Confidence 43221111000 00012479999999886521 112222347899999999999642111 1123333222233456999
Q ss_pred EEecCccc-------------------hHHHHH-------------hhc-CCCe--------------------------
Q 018420 157 FSATLSKE-------------------IRPVCK-------------KFM-QDPM-------------------------- 177 (356)
Q Consensus 157 ~SaT~~~~-------------------~~~~~~-------------~~~-~~~~-------------------------- 177 (356)
+||||... ...+.. .++ .++.
T Consensus 311 LTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~ 390 (956)
T PRK04914 311 LTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANS 390 (956)
T ss_pred EEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcc
Confidence 99998431 000100 000 0000
Q ss_pred -----------------------EEEeccc----cccccccceEEE-EEc------------------------------
Q 018420 178 -----------------------EIYVDDE----AKLTLHGLVQHY-IKL------------------------------ 199 (356)
Q Consensus 178 -----------------------~~~~~~~----~~~~~~~~~~~~-~~~------------------------------ 199 (356)
.+.+... .... ......+ ...
T Consensus 391 ~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp-~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~~~~ 469 (956)
T PRK04914 391 DSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFP-KRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQEFE 469 (956)
T ss_pred cccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCC-cCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHHHHh
Confidence 0000000 0000 0000010 000
Q ss_pred ------ChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHH-hCCCCeEEEecCCCHHHHHHHHHHhhcC--CCcE
Q 018420 200 ------SELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLV-ECNFPSICIHSGMSQEERLTRYKGFKEG--NKRI 270 (356)
Q Consensus 200 ------~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~--~~~v 270 (356)
....+.+.+..+++.....++||||++.+.+..+.+.|. ..|+++..+||++++.+|.+.++.|+++ ..+|
T Consensus 470 ~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V 549 (956)
T PRK04914 470 DNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV 549 (956)
T ss_pred hhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE
Confidence 001133345566666667899999999999999999995 5699999999999999999999999985 5899
Q ss_pred EEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcc
Q 018420 271 LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEV 339 (356)
Q Consensus 271 lv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (356)
||||++.++|+|++.+++||+|+.|+++..|.||+||++|.|+.+.+.+++....+ ...+.+...+..
T Consensus 550 LIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~-t~~e~i~~~~~~ 617 (956)
T PRK04914 550 LLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG-TAQERLFRWYHE 617 (956)
T ss_pred EEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCC-CHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999987666554322 234444444444
No 81
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.1e-31 Score=261.13 Aligned_cols=278 Identities=18% Similarity=0.291 Sum_probs=200.4
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce---EEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK---VAV 77 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~---v~~ 77 (356)
+|+.+++.++.|+++++.||||+|||..+ +++...+.. .+.+++|++||++|+.|+.+.++.+.... ++. +..
T Consensus 82 iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~~l~~~~-~i~~~~i~~ 157 (1171)
T TIGR01054 82 IQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAK--KGKRCYIILPTTLLVIQVAEKISSLAEKA-GVGTVNIGA 157 (1171)
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHHHHHHhc-CCceeeeee
Confidence 58999999999999999999999999744 333333322 13489999999999999999999987654 443 345
Q ss_pred EEcCcchHHhH---HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc----------ccchhH-HHH
Q 018420 78 FYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----------LDMRRD-VQE 143 (356)
Q Consensus 78 ~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~----------~~~~~~-~~~ 143 (356)
++|+.+..... +.+.++.++|+|+||+.+...+.... . .++++|+||||++... .+|... +..
T Consensus 158 ~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~ 234 (1171)
T TIGR01054 158 YHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEK 234 (1171)
T ss_pred ecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHH
Confidence 77887765443 33455568999999999987765422 1 7899999999999763 234432 222
Q ss_pred HH----------------------hhCCCCCc--EEEEEecC-ccchHHHHHhhcCCCeEEEeccccccccccceEEEEE
Q 018420 144 IF----------------------KMTPHDKQ--VMMFSATL-SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK 198 (356)
Q Consensus 144 ~~----------------------~~~~~~~~--~i~~SaT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (356)
++ ...+...| ++++|||+ +..... .++.++..+.+... ....+++.+.+..
T Consensus 235 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~~-~~~~r~I~~~~~~ 310 (1171)
T TIGR01054 235 AWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGGG-SDTLRNVVDVYVE 310 (1171)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecCc-cccccceEEEEEe
Confidence 21 22333344 56789994 444332 22333433333322 2344556666654
Q ss_pred cChhHHHHHHHHHHhccCCCeEEEEecch---hhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEc-
Q 018420 199 LSELEKNRKLNDLLDALDFNQVVIFVKSV---SRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT- 274 (356)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~ivf~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t- 274 (356)
... +...+..+++.. +.++||||++. +.++.++..|...|+++..+||++++ ..++.|++|+++|||||
T Consensus 311 ~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata 383 (1171)
T TIGR01054 311 DED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVA 383 (1171)
T ss_pred ccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHcCCCCEEEEec
Confidence 433 134455666554 36799999999 99999999999999999999999873 67899999999999995
Q ss_pred ---CccccCCCCCC-CCEEEEecCCC
Q 018420 275 ---DLVGRGIDIER-VNIVINYDMPD 296 (356)
Q Consensus 275 ---~~~~~G~d~~~-~~~vi~~~~~~ 296 (356)
+.+++|+|+|+ +++||+++.|.
T Consensus 384 ~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 384 SYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred cccCcccccCCCCccccEEEEECCCC
Confidence 89999999999 89999999885
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=8.7e-31 Score=251.53 Aligned_cols=294 Identities=20% Similarity=0.257 Sum_probs=194.9
Q ss_pred ccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCch----HHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 4 ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR----ELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 4 ~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~----~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+.++.+.+++.++|+|+||||||+..-...+. ...+..+ .+++.-|++ +|+.++++++..-. +-.+++-.
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle-~g~g~~g-~I~~TQPRRlAArsLA~RVA~El~~~l----G~~VGY~v 154 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTTQLPKICLE-LGRGVKG-LIGHTQPRRLAARTVANRIAEELETEL----GGCVGYKV 154 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHHHHHHHHHH-cCCCCCC-ceeeCCCcHHHHHHHHHHHHHHHhhhh----cceeceee
Confidence 34566666778899999999999853222222 2222222 455556865 45555555444322 22333322
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccc-ccccccchhH-HHHHHhhCCCCCcEEEE
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRRD-VQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~-~~~~~~~~~~-~~~~~~~~~~~~~~i~~ 157 (356)
.... .. +..+.|+++|+..++..+.... .++++++||+||||. ..+ .++... +..+... .++.|+|++
T Consensus 155 rf~~------~~-s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn-~DfLLg~Lk~lL~~-rpdlKvILm 224 (1294)
T PRK11131 155 RFND------QV-SDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLN-IDFILGYLKELLPR-RPDLKVIIT 224 (1294)
T ss_pred cCcc------cc-CCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccc-cchHHHHHHHhhhc-CCCceEEEe
Confidence 1111 11 2346999999999999887543 488999999999995 444 555543 3333322 256899999
Q ss_pred EecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChh---HHHHHHHHHH------hccCCCeEEEEecchh
Q 018420 158 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL---EKNRKLNDLL------DALDFNQVVIFVKSVS 228 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~ivf~~~~~ 228 (356)
|||++. ..+.+.+...|. +.+.... . .+...|...... .+.+.+..++ .....+.+|||+++..
T Consensus 225 SATid~--e~fs~~F~~apv-I~V~Gr~-~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~ 297 (1294)
T PRK11131 225 SATIDP--ERFSRHFNNAPI-IEVSGRT-Y---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGER 297 (1294)
T ss_pred eCCCCH--HHHHHHcCCCCE-EEEcCcc-c---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHH
Confidence 999974 345444444443 3332221 1 122333332211 1122222221 1235578999999999
Q ss_pred hHHHHHHHHHhCCCC---eEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecC-----------
Q 018420 229 RAAELNKLLVECNFP---SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM----------- 294 (356)
Q Consensus 229 ~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~----------- 294 (356)
.+..+++.|.+.+.+ +..+||++++.+|..+++. .|..+|||||+++++|+|+|++++||+++.
T Consensus 298 EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~ 375 (1294)
T PRK11131 298 EIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK 375 (1294)
T ss_pred HHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccC
Confidence 999999999987664 5678999999999999875 477899999999999999999999999862
Q ss_pred -------CCChhhhhhccccccCCCCcceEEEEEcc
Q 018420 295 -------PDSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 295 -------~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
+.|..++.||.||+||. .+|.|+.+++.
T Consensus 376 ~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte 410 (1294)
T PRK11131 376 VQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSE 410 (1294)
T ss_pred cccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCH
Confidence 24668999999999998 69999999985
No 83
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=7.8e-31 Score=246.81 Aligned_cols=297 Identities=20% Similarity=0.225 Sum_probs=189.2
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhcc-CCCceEEEEEcCcchHHhH-
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFYGGVNIKIHK- 88 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~- 88 (356)
....++|.+|||+|||.+++.++......+.. .+++|..|++++++|++++++++... ++...+...||.......-
T Consensus 300 ~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~-~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~ 378 (878)
T PRK09694 300 QPGLTIIEAPTGSGKTEAALAYAWRLIDQGLA-DSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQ 378 (878)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCC-CeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhh
Confidence 35678999999999999987766654443333 37999999999999999999865432 2234677777754321100
Q ss_pred --------------------HHHhc-----CCCcEEEechHHHHHHHhc-CCcccCCc----cEEEEeccccccccccch
Q 018420 89 --------------------DLLKN-----ECPQIVVGTPGRILALARD-KDLSLKNV----RHFILDECDKMLESLDMR 138 (356)
Q Consensus 89 --------------------~~~~~-----~~~~i~v~T~~~l~~~~~~-~~~~~~~~----~~viiDE~H~~~~~~~~~ 138 (356)
..+.. --..|+|||+++++..... ....++.+ ++|||||+|.+... ..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD~y--m~ 456 (878)
T PRK09694 379 SLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYDAY--MY 456 (878)
T ss_pred hhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCCHH--HH
Confidence 01110 1148999999999854332 22222323 47999999998442 22
Q ss_pred hHHHHHHhhC-CCCCcEEEEEecCccchHHHHHhhcCCC----------eEEEeccc--cccc--------cccceEEEE
Q 018420 139 RDVQEIFKMT-PHDKQVMMFSATLSKEIRPVCKKFMQDP----------MEIYVDDE--AKLT--------LHGLVQHYI 197 (356)
Q Consensus 139 ~~~~~~~~~~-~~~~~~i~~SaT~~~~~~~~~~~~~~~~----------~~~~~~~~--~~~~--------~~~~~~~~~ 197 (356)
..+...+... ....++|+||||+|......+...+... ........ .... .........
T Consensus 457 ~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 536 (878)
T PRK09694 457 GLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLE 536 (878)
T ss_pred HHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEE
Confidence 2333333222 2356799999999987655443322211 00000000 0000 000001111
Q ss_pred Ec--Ch-hHHHHHHHHHHhc-cCCCeEEEEecchhhHHHHHHHHHhCC---CCeEEEecCCCHHHHH----HHHHHh-hc
Q 018420 198 KL--SE-LEKNRKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECN---FPSICIHSGMSQEERL----TRYKGF-KE 265 (356)
Q Consensus 198 ~~--~~-~~~~~~~~~~~~~-~~~~~~ivf~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~----~~~~~f-~~ 265 (356)
.. .. ......+..+.+. ..+++++||||+++.|+.+++.|++.+ ..+..+|++++..+|. ++++.| ++
T Consensus 537 ~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~ 616 (878)
T PRK09694 537 PICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKN 616 (878)
T ss_pred eeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 11 11 1112333444433 356789999999999999999999764 5789999999999884 567777 55
Q ss_pred CC---CcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCC
Q 018420 266 GN---KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 313 (356)
Q Consensus 266 ~~---~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 313 (356)
|+ ..|||+|++++.|+|+ +++.+|....| .+.++||+||++|.++
T Consensus 617 g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 617 GKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 65 4799999999999999 57988876655 6799999999999865
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.8e-30 Score=242.68 Aligned_cols=313 Identities=22% Similarity=0.243 Sum_probs=238.8
Q ss_pred ccccHhhHhc----C--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 2 QHECIPQAIL----G--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 2 Q~~~~~~~~~----~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
|..|++.+.+ + .+=+|||..|.|||-+++=++......++ .|.++|||--|++|++++|+.-+.++ .++|
T Consensus 599 Ql~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK---QVAvLVPTTlLA~QHy~tFkeRF~~f-PV~I 674 (1139)
T COG1197 599 QLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGK---QVAVLVPTTLLAQQHYETFKERFAGF-PVRI 674 (1139)
T ss_pred HHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCC---eEEEEcccHHhHHHHHHHHHHHhcCC-CeeE
Confidence 5667777765 3 45699999999999999888888887775 79999999999999999999887777 5777
Q ss_pred EEEEcCcchHHh---HHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCC
Q 018420 76 AVFYGGVNIKIH---KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 152 (356)
Q Consensus 76 ~~~~~~~~~~~~---~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 152 (356)
..+.--.+.++. .+.++++..||+|+|+.-+ ...+.+.+++++||||=|++.- .....++++ ..+.
T Consensus 675 ~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEqRFGV--k~KEkLK~L----r~~V 743 (1139)
T COG1197 675 EVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQRFGV--KHKEKLKEL----RANV 743 (1139)
T ss_pred EEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechhhcCc--cHHHHHHHH----hccC
Confidence 776654444433 4557789899999998766 5677889999999999998843 334444444 4556
Q ss_pred cEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEE-cChhHHHHHHHHHHhcc-CCCeEEEEecchhhH
Q 018420 153 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIK-LSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRA 230 (356)
Q Consensus 153 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~ivf~~~~~~~ 230 (356)
-++-|||||-+..-.+.....++-..+...+..... .+.|+. ..+.- .-..+.+.. +++.+--..|.++..
T Consensus 744 DvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~p----V~T~V~~~d~~~---ireAI~REl~RgGQvfYv~NrV~~I 816 (1139)
T COG1197 744 DVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLP----VKTFVSEYDDLL---IREAILRELLRGGQVFYVHNRVESI 816 (1139)
T ss_pred cEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcc----eEEEEecCChHH---HHHHHHHHHhcCCEEEEEecchhhH
Confidence 699999999887666655555554444333332221 222332 22211 222223333 668888889999999
Q ss_pred HHHHHHHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCC-CChhhhhhcccc
Q 018420 231 AELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP-DSADTYLHRVGR 307 (356)
Q Consensus 231 ~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR 307 (356)
+.+++.|++. .-++...||.|+..+-.+++..|.+|+.+|||||..++.|+|+|+++++|+-+.. ....++.|..||
T Consensus 817 e~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGR 896 (1139)
T COG1197 817 EKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGR 896 (1139)
T ss_pred HHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccc
Confidence 9999999987 5678889999999999999999999999999999999999999999999988765 478899999999
Q ss_pred ccCCCCcceEEEEEcc--CCChHHHHHHHHH
Q 018420 308 AGRFGTKGLAITFVSS--ASDSDILNQVQAR 336 (356)
Q Consensus 308 ~~R~~~~~~~~~~~~~--~~~~~~~~~~~~~ 336 (356)
+||.++.+.+|.++.+ .-.+...++++..
T Consensus 897 VGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI 927 (1139)
T COG1197 897 VGRSNKQAYAYFLYPPQKALTEDAEKRLEAI 927 (1139)
T ss_pred cCCccceEEEEEeecCccccCHHHHHHHHHH
Confidence 9999999999999885 3444555555543
No 85
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.98 E-value=4.8e-31 Score=216.72 Aligned_cols=310 Identities=20% Similarity=0.278 Sum_probs=230.2
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|..++++...++++++..|||.||+++|.++++..-. ..+++||..+|++.+.-+++.+ ++....+..
T Consensus 98 lq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg------~alvi~plislmedqil~lkql-----gi~as~lna 166 (695)
T KOG0353|consen 98 LQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADG------FALVICPLISLMEDQILQLKQL-----GIDASMLNA 166 (695)
T ss_pred hHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCC------ceEeechhHHHHHHHHHHHHHh-----CcchhhccC
Confidence 57889999999999999999999999999999886533 6899999999999988888876 555555555
Q ss_pred CcchHHhHHH---H--hcCCCcEEEechHHHHHHH---h--cCCcccCCccEEEEecccccccc-ccchhHHHHH--Hhh
Q 018420 81 GVNIKIHKDL---L--KNECPQIVVGTPGRILALA---R--DKDLSLKNVRHFILDECDKMLES-LDMRRDVQEI--FKM 147 (356)
Q Consensus 81 ~~~~~~~~~~---~--~~~~~~i~v~T~~~l~~~~---~--~~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~~--~~~ 147 (356)
.....+.++. + +.+...+++.||+.+.... . ........+.++-+||+|..+.| ++|+..+..+ ++.
T Consensus 167 nsske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkr 246 (695)
T KOG0353|consen 167 NSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKR 246 (695)
T ss_pred cccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHH
Confidence 4443322221 1 2345678999999874311 1 22334567888999999999977 7777765543 344
Q ss_pred CCCCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhc----cCCCeEEEE
Q 018420 148 TPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA----LDFNQVVIF 223 (356)
Q Consensus 148 ~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivf 223 (356)
.=++.+++++|||....+-.-++..+....-+.+... ....++.-. ....+....+.+.++.+. ..+...|||
T Consensus 247 qf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~--fnr~nl~ye-v~qkp~n~dd~~edi~k~i~~~f~gqsgiiy 323 (695)
T KOG0353|consen 247 QFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG--FNRPNLKYE-VRQKPGNEDDCIEDIAKLIKGDFAGQSGIIY 323 (695)
T ss_pred hCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc--cCCCCceeE-eeeCCCChHHHHHHHHHHhccccCCCcceEE
Confidence 3457789999999877655554444332211111111 111111111 122222233334444333 255679999
Q ss_pred ecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhh
Q 018420 224 VKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 303 (356)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q 303 (356)
|-+.+.++.++..|+.+|+....+|..+.+.++.-.-+.|-.|++.|+|+|-+.+.|+|-|+++.||+...|.|...|.|
T Consensus 324 c~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 324 CFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred EeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------ccccccCCCCcceEEEEEccC
Q 018420 304 -------------------------------------------RVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 304 -------------------------------------------~~GR~~R~~~~~~~~~~~~~~ 324 (356)
-.||+||.+.+..|++++...
T Consensus 404 asarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 404 ASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred HHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 679999999999999998754
No 86
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.98 E-value=2.6e-30 Score=209.40 Aligned_cols=302 Identities=16% Similarity=0.225 Sum_probs=207.7
Q ss_pred HhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchH
Q 018420 6 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 85 (356)
Q Consensus 6 ~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~ 85 (356)
+..+.+.++.+|||.||+|||-...-.+...+..+. ++.+.+|+...+...+.+++..+. +..+..++|+....
T Consensus 110 ~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~---~vciASPRvDVclEl~~Rlk~aF~---~~~I~~Lyg~S~~~ 183 (441)
T COG4098 110 VQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG---RVCIASPRVDVCLELYPRLKQAFS---NCDIDLLYGDSDSY 183 (441)
T ss_pred HHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCC---eEEEecCcccchHHHHHHHHHhhc---cCCeeeEecCCchh
Confidence 344455788999999999999876555555555444 899999999999999888886653 56888888876543
Q ss_pred HhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccch
Q 018420 86 IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI 165 (356)
Q Consensus 86 ~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 165 (356)
.. ..++|+|..++++.. +.+|++||||++.+.. ...........+........|.+||||++.+
T Consensus 184 fr--------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~-~~d~~L~~Av~~ark~~g~~IylTATp~k~l 247 (441)
T COG4098 184 FR--------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPF-SDDQSLQYAVKKARKKEGATIYLTATPTKKL 247 (441)
T ss_pred cc--------ccEEEEehHHHHHHH-------hhccEEEEeccccccc-cCCHHHHHHHHHhhcccCceEEEecCChHHH
Confidence 32 378888888887544 4678899999999865 3334444455555556667999999999776
Q ss_pred HHHHHhhcCCCeEEEeccccccccc-cceEEEEEcChhHHH-------HHHHHHHhcc--CCCeEEEEecchhhHHHHHH
Q 018420 166 RPVCKKFMQDPMEIYVDDEAKLTLH-GLVQHYIKLSELEKN-------RKLNDLLDAL--DFNQVVIFVKSVSRAAELNK 235 (356)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~ 235 (356)
...+...-..+..+. . ..... -....+....+..+. ..+...++.. .+.|++||+++++.++.+++
T Consensus 248 ~r~~~~g~~~~~klp--~--RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~ 323 (441)
T COG4098 248 ERKILKGNLRILKLP--A--RFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAA 323 (441)
T ss_pred HHHhhhCCeeEeecc--h--hhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHH
Confidence 554433211111110 0 00000 112223333332221 2444444443 45899999999999999999
Q ss_pred HHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCC--CChhhhhhccccccCC
Q 018420 236 LLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP--DSADTYLHRVGRAGRF 311 (356)
Q Consensus 236 ~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~--~s~~~~~Q~~GR~~R~ 311 (356)
.|+.. ..+....|+. ...|.+....|++|++++||+|.++++|+.+|++++.++-... .+...++|..||+||.
T Consensus 324 ~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs 401 (441)
T COG4098 324 ALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRS 401 (441)
T ss_pred HHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCC
Confidence 99654 4455667764 5678888999999999999999999999999999988865433 6888999999999996
Q ss_pred CC-cceEEEEEccCCChHHHHHHHH
Q 018420 312 GT-KGLAITFVSSASDSDILNQVQA 335 (356)
Q Consensus 312 ~~-~~~~~~~~~~~~~~~~~~~~~~ 335 (356)
-. +..-+.|+..+......+..+.
T Consensus 402 ~~~PtGdv~FFH~G~skaM~~A~ke 426 (441)
T COG4098 402 LERPTGDVLFFHYGKSKAMKQARKE 426 (441)
T ss_pred CcCCCCcEEEEeccchHHHHHHHHH
Confidence 43 4334555665555544444443
No 87
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.98 E-value=3.1e-30 Score=249.44 Aligned_cols=314 Identities=18% Similarity=0.209 Sum_probs=194.0
Q ss_pred ccccHhhHhc-----CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEE
Q 018420 2 QHECIPQAIL-----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 2 Q~~~~~~~~~-----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~ 76 (356)
|.+|++.+.+ .+++++++|||||||.+++..+...+..... .++++++|+.+|+.|+.+.+..+.... .....
T Consensus 418 Q~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~-~rVLfLvDR~~L~~Qa~~~F~~~~~~~-~~~~~ 495 (1123)
T PRK11448 418 QEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRF-RRILFLVDRSALGEQAEDAFKDTKIEG-DQTFA 495 (1123)
T ss_pred HHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCcc-CeEEEEecHHHHHHHHHHHHHhccccc-ccchh
Confidence 7778877652 3578999999999998865544443333322 389999999999999999988763211 11111
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC-----CcccCCccEEEEecccccccc--------c------cc
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-----DLSLKNVRHFILDECDKMLES--------L------DM 137 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-----~~~~~~~~~viiDE~H~~~~~--------~------~~ 137 (356)
.+.+. ..-.+........|+|+|+++|.+.+... ...+..+++||+||||+.... . ++
T Consensus 496 ~i~~i---~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~ 572 (1123)
T PRK11448 496 SIYDI---KGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDY 572 (1123)
T ss_pred hhhch---hhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhH
Confidence 11110 00011112233589999999998765321 235678999999999996420 0 11
Q ss_pred hhHHHHHHhhCCCCCcEEEEEecCccchHHHHHh--------------hcC---CCeEEEeccccc-ccc------ccce
Q 018420 138 RRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK--------------FMQ---DPMEIYVDDEAK-LTL------HGLV 193 (356)
Q Consensus 138 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~--------------~~~---~~~~~~~~~~~~-~~~------~~~~ 193 (356)
...+..++..+ +...|++||||......+... ++. .|..+....... ... ....
T Consensus 573 ~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~ 650 (1123)
T PRK11448 573 VSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVIN 650 (1123)
T ss_pred HHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcc
Confidence 24455555544 256899999997543222111 111 011111100000 000 0000
Q ss_pred E---EE--EEcCh--------hHH-------H----HHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC------C--
Q 018420 194 Q---HY--IKLSE--------LEK-------N----RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC------N-- 241 (356)
Q Consensus 194 ~---~~--~~~~~--------~~~-------~----~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~------~-- 241 (356)
. .+ ...+. ..+ . ..+...+.....+++||||.+.++|..+++.|.+. +
T Consensus 651 ~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~ 730 (1123)
T PRK11448 651 TQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVE 730 (1123)
T ss_pred hhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcC
Confidence 0 00 00000 000 0 01111122224479999999999999999887763 1
Q ss_pred -CCeEEEecCCCHHHHHHHHHHhhcCCC-cEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCC--cceE
Q 018420 242 -FPSICIHSGMSQEERLTRYKGFKEGNK-RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT--KGLA 317 (356)
Q Consensus 242 -~~~~~~~~~~~~~~~~~~~~~f~~~~~-~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~--~~~~ 317 (356)
..+..++|..+ ++.++++.|++++. .|+|+++++.+|+|+|.+.+|++++++.|...|.|++||+.|... ....
T Consensus 731 ~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~ 808 (1123)
T PRK11448 731 DDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTH 808 (1123)
T ss_pred ccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCce
Confidence 23455788765 45678999999876 689999999999999999999999999999999999999999765 3556
Q ss_pred EEEEccC
Q 018420 318 ITFVSSA 324 (356)
Q Consensus 318 ~~~~~~~ 324 (356)
+.+++..
T Consensus 809 f~I~D~v 815 (1123)
T PRK11448 809 FRIFDAV 815 (1123)
T ss_pred EEEEehH
Confidence 6666643
No 88
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=5.9e-30 Score=246.65 Aligned_cols=299 Identities=19% Similarity=0.236 Sum_probs=202.8
Q ss_pred ccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcc
Q 018420 4 ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 83 (356)
Q Consensus 4 ~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~ 83 (356)
+.+..+..++.++|+|+||||||+..-..++... .+.. .++++.-|++-.+..++.++....+...|-.|++-.....
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~-~~~~-~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~ 151 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQLPKICLELG-RGSH-GLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHD 151 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC-CCCC-ceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCc
Confidence 4455666678889999999999986543333322 2222 2677788999888888888876654322334443222111
Q ss_pred hHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccc-ccccccchhH-HHHHHhhCCCCCcEEEEEecC
Q 018420 84 IKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRRD-VQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~-~~~~~~~~~~-~~~~~~~~~~~~~~i~~SaT~ 161 (356)
. .+..+.|.++|+..|+..+.... .++++++||+||+|. ..+ .++... +..+... .++.++|+||||+
T Consensus 152 ~-------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~-~D~LL~lLk~il~~-rpdLKlIlmSATl 221 (1283)
T TIGR01967 152 Q-------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLN-IDFLLGYLKQLLPR-RPDLKIIITSATI 221 (1283)
T ss_pred c-------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhcc-chhHHHHHHHHHhh-CCCCeEEEEeCCc
Confidence 1 12236899999999998776543 478999999999995 443 555544 4444333 3578999999999
Q ss_pred ccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcCh------hHHHHHHHHHHh---ccCCCeEEEEecchhhHHH
Q 018420 162 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE------LEKNRKLNDLLD---ALDFNQVVIFVKSVSRAAE 232 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~---~~~~~~~ivf~~~~~~~~~ 232 (356)
+. ..+.+.+...|. +.+... ... ....|..... ......+...+. ....+.+|||+++..+++.
T Consensus 222 d~--~~fa~~F~~apv-I~V~Gr-~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~ 294 (1283)
T TIGR01967 222 DP--ERFSRHFNNAPI-IEVSGR-TYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRD 294 (1283)
T ss_pred CH--HHHHHHhcCCCE-EEECCC-ccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHH
Confidence 64 344444444443 333221 111 1222322111 111122222221 1245789999999999999
Q ss_pred HHHHHHhCCC---CeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCC--------------
Q 018420 233 LNKLLVECNF---PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP-------------- 295 (356)
Q Consensus 233 ~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~-------------- 295 (356)
+++.|...+. .+..+||.+++.++.++++.+ +..+|++||+++++|+|+|++.+||+++.+
T Consensus 295 l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L 372 (1283)
T TIGR01967 295 AAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRL 372 (1283)
T ss_pred HHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcccc
Confidence 9999998643 467799999999999886653 346899999999999999999999998833
Q ss_pred ----CChhhhhhccccccCCCCcceEEEEEccC
Q 018420 296 ----DSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 296 ----~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
.|..++.||.||+||.+ +|.|+.+++..
T Consensus 373 ~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 373 PIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred CCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 36789999999999997 99999999853
No 89
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.97 E-value=1.9e-29 Score=210.40 Aligned_cols=306 Identities=26% Similarity=0.475 Sum_probs=227.2
Q ss_pred CCCeeEEEEcCchHHHHHHHHHHHHHhccC--CCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccC
Q 018420 41 PGQVTALVLCHTRELAYQICHEFERFSTYL--PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLK 118 (356)
Q Consensus 41 ~~~~~vlii~P~~~l~~q~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~ 118 (356)
++.+..+|+-|+++|++|+..++++|.... |.++...+.|+.....+.+.+.++ .+|+|+||.++...+..+.+.+.
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g-~~ivvGtpgRl~~~is~g~~~lt 362 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDG-THIVVGTPGRLLQPISKGLVTLT 362 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcC-ceeeecCchhhhhhhhccceeee
Confidence 456788999999999999999888776554 344555778888888888888877 69999999999999999999999
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCC------CCcEEEEEecCcc-chHHHHHhhcCCCeEEEecccccccccc
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPH------DKQVMMFSATLSK-EIRPVCKKFMQDPMEIYVDDEAKLTLHG 191 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~------~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (356)
...+++.||++.+.. .++-..+.++...++. ..|.+.+|||+.. ++.++....+..|.-+.....+.....-
T Consensus 363 ~crFlvlDead~lL~-qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetv 441 (725)
T KOG0349|consen 363 HCRFLVLDEADLLLG-QGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETV 441 (725)
T ss_pred eeEEEEecchhhhhh-cccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhh
Confidence 999999999999987 6777777777766652 4689999999864 2333444444444333322221111100
Q ss_pred c---------------------------eEEEE---EcChhH--------HHHHHHHHHhccCCCeEEEEecchhhHHHH
Q 018420 192 L---------------------------VQHYI---KLSELE--------KNRKLNDLLDALDFNQVVIFVKSVSRAAEL 233 (356)
Q Consensus 192 ~---------------------------~~~~~---~~~~~~--------~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~ 233 (356)
. ...+. ..+... +.+.....++.+...++|+||.+...+..+
T Consensus 442 Hhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnL 521 (725)
T KOG0349|consen 442 HHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNL 521 (725)
T ss_pred ccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHH
Confidence 0 00000 000000 112333445556668999999999999999
Q ss_pred HHHHHhCC---CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccC
Q 018420 234 NKLLVECN---FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 310 (356)
Q Consensus 234 ~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 310 (356)
.+++.+.| +.++++||+..+.+|++.++.|+.++++.||||+++.+|+|+..+-.+|....|..-..|++|+||+||
T Consensus 522 er~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgr 601 (725)
T KOG0349|consen 522 ERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGR 601 (725)
T ss_pred HHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccch
Confidence 99999874 578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEccC-------------------------------CChHHHHHHHHHhcccCcccCccc
Q 018420 311 FGTKGLAITFVSSA-------------------------------SDSDILNQVQARFEVDIKELPEQI 348 (356)
Q Consensus 311 ~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
..+-|.++.++... ++...+.++++.++..++++...+
T Consensus 602 aermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~ 670 (725)
T KOG0349|consen 602 AERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTM 670 (725)
T ss_pred hhhcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCC
Confidence 76666666555432 244566677777777666655443
No 90
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.4e-29 Score=232.87 Aligned_cols=313 Identities=24% Similarity=0.322 Sum_probs=213.9
Q ss_pred ccccHhhHhcC-CcEEEEccCCCccchHhHHHhhcCcCCCC--------CCeeEEEEcCchHHHHHHHHHHHHHhccCCC
Q 018420 2 QHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNP--------GQVTALVLCHTRELAYQICHEFERFSTYLPD 72 (356)
Q Consensus 2 Q~~~~~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~--------~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~ 72 (356)
|.....+.+.+ .++++|||||+|||..+++.+++.+..+. ...+++|++|.++|++.|..++.+..+.+ +
T Consensus 314 QS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~-G 392 (1674)
T KOG0951|consen 314 QSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPL-G 392 (1674)
T ss_pred HHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcccc-C
Confidence 55556666654 68999999999999999999998776543 23489999999999999999998888887 9
Q ss_pred ceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCC--cccCCccEEEEeccccccccccch--h---HHHHHH
Q 018420 73 IKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLESLDMR--R---DVQEIF 145 (356)
Q Consensus 73 ~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~viiDE~H~~~~~~~~~--~---~~~~~~ 145 (356)
+.|...+|+....... + ..+.|++|||+.+--.-++.. ...+-++++|+||.|..-+..+.. . ....-.
T Consensus 393 I~V~ElTgD~~l~~~q--i--eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 393 ITVLELTGDSQLGKEQ--I--EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred cEEEEecccccchhhh--h--hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 9999999976633221 1 125899999999843333311 123457889999999884322211 1 122222
Q ss_pred hhCCCCCcEEEEEecCccchHHHHHhhcCCCe-EEEeccccccccccceEEEEEcChh---HHHHHHH-----HHHhccC
Q 018420 146 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM-EIYVDDEAKLTLHGLVQHYIKLSEL---EKNRKLN-----DLLDALD 216 (356)
Q Consensus 146 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~ 216 (356)
......++.+++|||+|+. .+...-+..++. ..+++. ...+-.+.+.++...+. .+...+. .+++...
T Consensus 469 es~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~--syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~ag 545 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDS--SYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAG 545 (1674)
T ss_pred hhcccCceeeeecccCCch-hhhHHHhccCcccccccCc--ccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCC
Confidence 3334578899999999964 333332223332 222222 22333444555443332 2222222 2234446
Q ss_pred CCeEEEEecchhhHHHHHHHHHh-------------------------------------CCCCeEEEecCCCHHHHHHH
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVE-------------------------------------CNFPSICIHSGMSQEERLTR 259 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~-------------------------------------~~~~~~~~~~~~~~~~~~~~ 259 (356)
.++++||+.+++.+...++.++. .....+.+|+||++.+|..+
T Consensus 546 k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~ 625 (1674)
T KOG0951|consen 546 KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELV 625 (1674)
T ss_pred CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHH
Confidence 68999999999888888777763 12457778999999999999
Q ss_pred HHHhhcCCCcEEEEcCccccCCCCCCCCEEE----EecC------CCChhhhhhccccccCCCCc--ceEEEEEc
Q 018420 260 YKGFKEGNKRILVATDLVGRGIDIERVNIVI----NYDM------PDSADTYLHRVGRAGRFGTK--GLAITFVS 322 (356)
Q Consensus 260 ~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi----~~~~------~~s~~~~~Q~~GR~~R~~~~--~~~~~~~~ 322 (356)
.+.|++|+++|+++|..+++|+|+|.-.++| .+++ +.++.+..||+||+||.+.+ |..+++.+
T Consensus 626 EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 626 EDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred HHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 9999999999999999999999998544444 2222 24788999999999997554 44444444
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.5e-28 Score=224.72 Aligned_cols=300 Identities=19% Similarity=0.245 Sum_probs=216.3
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcC
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 94 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 94 (356)
-+..++||+|||+++.++++.....+. .+.+++|++.|+.|.++++..+...+ ++.++.+.|+.+........
T Consensus 98 ~Iaem~TGeGKTL~a~Lpa~~~al~G~---~V~VvTpn~yLA~qd~e~m~~l~~~l-GLtv~~i~gg~~~~~r~~~y--- 170 (896)
T PRK13104 98 NIAEMRTGEGKTLVATLPAYLNAISGR---GVHIVTVNDYLAKRDSQWMKPIYEFL-GLTVGVIYPDMSHKEKQEAY--- 170 (896)
T ss_pred ccccccCCCCchHHHHHHHHHHHhcCC---CEEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCHHHHHHHh---
Confidence 478999999999999999987665443 58999999999999999999998887 89999999987766654443
Q ss_pred CCcEEEechHHH-HHHHhcC-Cccc-----CCccEEEEecccccccc---------------ccchhHHHHHHhhCCC--
Q 018420 95 CPQIVVGTPGRI-LALARDK-DLSL-----KNVRHFILDECDKMLES---------------LDMRRDVQEIFKMTPH-- 150 (356)
Q Consensus 95 ~~~i~v~T~~~l-~~~~~~~-~~~~-----~~~~~viiDE~H~~~~~---------------~~~~~~~~~~~~~~~~-- 150 (356)
.++|+++||..| +.+++.. ...+ +.+.++|+||+|.+.=+ ......+..+...+..
T Consensus 171 ~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~ 250 (896)
T PRK13104 171 KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQE 250 (896)
T ss_pred CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhcc
Confidence 259999999999 8888766 3333 57899999999998610 0000000000000000
Q ss_pred ------------CC------------------------------------------------------------------
Q 018420 151 ------------DK------------------------------------------------------------------ 152 (356)
Q Consensus 151 ------------~~------------------------------------------------------------------ 152 (356)
..
T Consensus 251 ~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~i 330 (896)
T PRK13104 251 EEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVI 330 (896)
T ss_pred ccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEE
Confidence 00
Q ss_pred --------------------------------------------------cEEEEEecCccchHHHHHhhcCCCeEEEec
Q 018420 153 --------------------------------------------------QVMMFSATLSKEIRPVCKKFMQDPMEIYVD 182 (356)
Q Consensus 153 --------------------------------------------------~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 182 (356)
++-+||+|......++...| +-+ +...
T Consensus 331 VDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY-~l~--Vv~I 407 (896)
T PRK13104 331 VDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIY-NLE--VVVI 407 (896)
T ss_pred EECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHh-CCC--EEEC
Confidence 23444444443323322222 211 1112
Q ss_pred cccccccccceEEEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHH
Q 018420 183 DEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRY 260 (356)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 260 (356)
+......+......+......+...+...+... .+.|+||||++++.++.+++.|.+.|++...+|+.+.+.++..+.
T Consensus 408 Ptnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia 487 (896)
T PRK13104 408 PTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIA 487 (896)
T ss_pred CCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHH
Confidence 222222223333345555666666665555332 678999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcEEEEcCccccCCCCCCC--------------------------------------CEEEEecCCCChhhhh
Q 018420 261 KGFKEGNKRILVATDLVGRGIDIERV--------------------------------------NIVINYDMPDSADTYL 302 (356)
Q Consensus 261 ~~f~~~~~~vlv~t~~~~~G~d~~~~--------------------------------------~~vi~~~~~~s~~~~~ 302 (356)
+.|+.|. |+|||+++++|+|+.-- -+||....+.|..--.
T Consensus 488 ~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~ 565 (896)
T PRK13104 488 EAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDN 565 (896)
T ss_pred hCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHH
Confidence 9999995 99999999999999632 1677777888999999
Q ss_pred hccccccCCCCcceEEEEEccCCC
Q 018420 303 HRVGRAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 303 Q~~GR~~R~~~~~~~~~~~~~~~~ 326 (356)
|..||+||+|.+|.+..+++-+++
T Consensus 566 QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 566 QLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HhccccccCCCCCceEEEEEcCcH
Confidence 999999999999999999886443
No 92
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=223.12 Aligned_cols=299 Identities=19% Similarity=0.233 Sum_probs=216.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|++|+.++.+|.+++|.|+|.+|||+++-.++.....+.. +.+|-+|-++|-+|-++.|+..++. ++.++|
T Consensus 301 FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~T---R~iYTSPIKALSNQKfRDFk~tF~D-----vgLlTG 372 (1248)
T KOG0947|consen 301 FQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMT---RTIYTSPIKALSNQKFRDFKETFGD-----VGLLTG 372 (1248)
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhcc---ceEecchhhhhccchHHHHHHhccc-----cceeec
Confidence 59999999999999999999999999987766665544433 7999999999999998888876543 347888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+...... +..+|+|.+.|.+.+-++.--++++.+||+||+|.+.+ ......+.+..-.++...++|++|||
T Consensus 373 DvqinPe--------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND-~eRGvVWEEViIMlP~HV~~IlLSAT 443 (1248)
T KOG0947|consen 373 DVQINPE--------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIND-VERGVVWEEVIIMLPRHVNFILLSAT 443 (1248)
T ss_pred ceeeCCC--------cceEeehHHHHHHHHhcccchhhccceEEEeeeeeccc-ccccccceeeeeeccccceEEEEecc
Confidence 7665433 57899999999998888887789999999999998876 77778889999999999999999999
Q ss_pred CccchHHHHHhhcC---CCeEEEecccccccccc----------------------ceEE---------EEE--------
Q 018420 161 LSKEIRPVCKKFMQ---DPMEIYVDDEAKLTLHG----------------------LVQH---------YIK-------- 198 (356)
Q Consensus 161 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------------------~~~~---------~~~-------- 198 (356)
.|+. .+++.|... +.+++......+.+... +... +..
T Consensus 444 VPN~-~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~ 522 (1248)
T KOG0947|consen 444 VPNT-LEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARG 522 (1248)
T ss_pred CCCh-HHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccc
Confidence 9865 345444321 22222111000000000 0000 000
Q ss_pred ---------------c--------ChhHH---HHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCC----------
Q 018420 199 ---------------L--------SELEK---NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF---------- 242 (356)
Q Consensus 199 ---------------~--------~~~~~---~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~---------- 242 (356)
. .+..+ ...+...++...--|+|+||-++..|+..+++|...+.
T Consensus 523 ~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~ 602 (1248)
T KOG0947|consen 523 GRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVH 602 (1248)
T ss_pred cccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHH
Confidence 0 00000 11222222333445899999999999999999886322
Q ss_pred -----------------------------CeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEec
Q 018420 243 -----------------------------PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 293 (356)
Q Consensus 243 -----------------------------~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~ 293 (356)
..+.+||++=+--+.-+.-.|..|-++||+||.+++.|+|.|.-.+|+ -.
T Consensus 603 lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF-~S 681 (1248)
T KOG0947|consen 603 LFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF-SS 681 (1248)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe-ee
Confidence 355678999888888888899999999999999999999998655554 32
Q ss_pred CC---------CChhhhhhccccccCCCCcceEE
Q 018420 294 MP---------DSADTYLHRVGRAGRFGTKGLAI 318 (356)
Q Consensus 294 ~~---------~s~~~~~Q~~GR~~R~~~~~~~~ 318 (356)
.. ..+.+|.|+.||+||.|-+....
T Consensus 682 l~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGT 715 (1248)
T KOG0947|consen 682 LRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGT 715 (1248)
T ss_pred hhhccCcceeecCChhHHhhhccccccccCcCce
Confidence 21 36889999999999998765443
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=8.3e-28 Score=221.99 Aligned_cols=300 Identities=20% Similarity=0.241 Sum_probs=219.5
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcC
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 94 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 94 (356)
-+..+.||+|||+++.++++.....+. .+-+++|+..|+.|.++++..+...+ ++.++.+.|+.+.........
T Consensus 97 ~Iaem~TGeGKTLva~lpa~l~aL~G~---~V~IvTpn~yLA~rd~e~~~~l~~~L-Glsv~~i~~~~~~~er~~~y~-- 170 (830)
T PRK12904 97 KIAEMKTGEGKTLVATLPAYLNALTGK---GVHVVTVNDYLAKRDAEWMGPLYEFL-GLSVGVILSGMSPEERREAYA-- 170 (830)
T ss_pred chhhhhcCCCcHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHHhhc-CCeEEEEcCCCCHHHHHHhcC--
Confidence 488999999999999988864333333 47799999999999999999998887 999999999888776665543
Q ss_pred CCcEEEechHHH-HHHHhcCCc------ccCCccEEEEecccccccc---------------ccchhHHHHHHhhCCC--
Q 018420 95 CPQIVVGTPGRI-LALARDKDL------SLKNVRHFILDECDKMLES---------------LDMRRDVQEIFKMTPH-- 150 (356)
Q Consensus 95 ~~~i~v~T~~~l-~~~~~~~~~------~~~~~~~viiDE~H~~~~~---------------~~~~~~~~~~~~~~~~-- 150 (356)
++|+++|+..| +.++++... ..+.+.++|+||++.+.=+ ......+..+...+..
T Consensus 171 -~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~ 249 (830)
T PRK12904 171 -ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEG 249 (830)
T ss_pred -CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCC
Confidence 59999999999 888876542 3677899999999998600 0000000111100000
Q ss_pred ------------------------------------------------------C-------------------------
Q 018420 151 ------------------------------------------------------D------------------------- 151 (356)
Q Consensus 151 ------------------------------------------------------~------------------------- 151 (356)
+
T Consensus 250 dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ 329 (830)
T PRK12904 250 DYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRR 329 (830)
T ss_pred CeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCc
Confidence 0
Q ss_pred ------------------------------------CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEE
Q 018420 152 ------------------------------------KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH 195 (356)
Q Consensus 152 ------------------------------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (356)
.++.+||+|......++...+ +-... .+ +......+.....
T Consensus 330 ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY-~l~vv-~I-Ptnkp~~r~d~~d 406 (830)
T PRK12904 330 YSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY-NLDVV-VI-PTNRPMIRIDHPD 406 (830)
T ss_pred cchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh-CCCEE-Ec-CCCCCeeeeeCCC
Confidence 035667777654433333333 22221 11 1112222222233
Q ss_pred EEEcChhHHHHHHHHHHhc--cCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEE
Q 018420 196 YIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA 273 (356)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~--~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~ 273 (356)
.+......+...+...+.. ..+.|+||||++++.++.+++.|.+.+++...+|+. +.+|...+..|+.+...|+||
T Consensus 407 ~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIA 484 (830)
T PRK12904 407 LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIA 484 (830)
T ss_pred eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEe
Confidence 4455666677777777755 467899999999999999999999999999999995 778888899999999999999
Q ss_pred cCccccCCCCCCC--------------------------------------CEEEEecCCCChhhhhhccccccCCCCcc
Q 018420 274 TDLVGRGIDIERV--------------------------------------NIVINYDMPDSADTYLHRVGRAGRFGTKG 315 (356)
Q Consensus 274 t~~~~~G~d~~~~--------------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~ 315 (356)
|+++++|+|++-- -+||....+.|..--.|..||+||+|.+|
T Consensus 485 TNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpG 564 (830)
T PRK12904 485 TNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPG 564 (830)
T ss_pred cccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCC
Confidence 9999999999754 16777778899999999999999999999
Q ss_pred eEEEEEccCCC
Q 018420 316 LAITFVSSASD 326 (356)
Q Consensus 316 ~~~~~~~~~~~ 326 (356)
.+-.+++-+++
T Consensus 565 ss~f~lSleD~ 575 (830)
T PRK12904 565 SSRFYLSLEDD 575 (830)
T ss_pred ceeEEEEcCcH
Confidence 99999886443
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=1.6e-27 Score=226.70 Aligned_cols=326 Identities=19% Similarity=0.217 Sum_probs=209.1
Q ss_pred ccccHhhHh----cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEE
Q 018420 2 QHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 77 (356)
Q Consensus 2 Q~~~~~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~ 77 (356)
|.+++..+. ++.+.|+...+|.|||+..+..+...........++|||||. ++..||.+++.++. |.+.+..
T Consensus 174 QleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~---p~l~v~~ 249 (1033)
T PLN03142 174 QLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFC---PVLRAVK 249 (1033)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHC---CCCceEE
Confidence 566666654 467899999999999987544333222222222268999996 67899999999886 4667888
Q ss_pred EEcCcchHHh--HHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEE
Q 018420 78 FYGGVNIKIH--KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 155 (356)
Q Consensus 78 ~~~~~~~~~~--~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (356)
++|....... ......+..+|+|+|++.+...... +.--.+++||+||||++.+. .....+....+. ....+
T Consensus 250 ~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~---~Sklskalr~L~-a~~RL 323 (1033)
T PLN03142 250 FHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE---NSLLSKTMRLFS-TNYRL 323 (1033)
T ss_pred EeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH---HHHHHHHHHHhh-cCcEE
Confidence 8875432211 1222334578999999998764321 22235788999999998553 233344444443 34478
Q ss_pred EEEecCccch-HHHH---H--------------hhcCC------------------CeEEEe---ccccccccccceEEE
Q 018420 156 MFSATLSKEI-RPVC---K--------------KFMQD------------------PMEIYV---DDEAKLTLHGLVQHY 196 (356)
Q Consensus 156 ~~SaT~~~~~-~~~~---~--------------~~~~~------------------~~~~~~---~~~~~~~~~~~~~~~ 196 (356)
++||||-.+. .++. . .++.. |..+.. ......+.......+
T Consensus 324 LLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~ 403 (1033)
T PLN03142 324 LITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILK 403 (1033)
T ss_pred EEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEe
Confidence 9999985331 1100 0 00000 000000 000000000000000
Q ss_pred EEcC-------------------------------------------------------------hhHHHHHHHHHHhcc
Q 018420 197 IKLS-------------------------------------------------------------ELEKNRKLNDLLDAL 215 (356)
Q Consensus 197 ~~~~-------------------------------------------------------------~~~~~~~~~~~~~~~ 215 (356)
+..+ ...+...+..++...
T Consensus 404 v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~L 483 (1033)
T PLN03142 404 VGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKL 483 (1033)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHH
Confidence 0000 011222233333322
Q ss_pred --CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcC---CCcEEEEcCccccCCCCCCCCEEE
Q 018420 216 --DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG---NKRILVATDLVGRGIDIERVNIVI 290 (356)
Q Consensus 216 --~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~---~~~vlv~t~~~~~G~d~~~~~~vi 290 (356)
.+.++|||+.....+..+.++|...++....++|+++..+|...++.|+.. ...+|++|.+.+.|+|+..+++||
T Consensus 484 k~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VI 563 (1033)
T PLN03142 484 KERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVI 563 (1033)
T ss_pred HhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEE
Confidence 457999999999999999999999999999999999999999999999764 235789999999999999999999
Q ss_pred EecCCCChhhhhhccccccCCCCcceEEEE--EccC-CChHHHHHHHHHh
Q 018420 291 NYDMPDSADTYLHRVGRAGRFGTKGLAITF--VSSA-SDSDILNQVQARF 337 (356)
Q Consensus 291 ~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~--~~~~-~~~~~~~~~~~~~ 337 (356)
+++++|++....|++||+.|.|+...|.++ +..+ -++.++....+++
T Consensus 564 iyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl 613 (1033)
T PLN03142 564 LYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKL 613 (1033)
T ss_pred EeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 999999999999999999999998876543 3322 3444554444433
No 95
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.3e-27 Score=219.83 Aligned_cols=298 Identities=17% Similarity=0.209 Sum_probs=211.0
Q ss_pred EEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcCC
Q 018420 16 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 95 (356)
Q Consensus 16 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 95 (356)
+..+.||+|||+++.+++......+. .+-+++|+..|+.|.++.+..+...+ |+.++.+.++...........
T Consensus 97 iaEm~TGEGKTLvA~l~a~l~al~G~---~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl~vg~i~~~~~~~~r~~~y~--- 169 (796)
T PRK12906 97 IAEMKTGEGKTLTATLPVYLNALTGK---GVHVVTVNEYLSSRDATEMGELYRWL-GLTVGLNLNSMSPDEKRAAYN--- 169 (796)
T ss_pred cccccCCCCCcHHHHHHHHHHHHcCC---CeEEEeccHHHHHhhHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHhc---
Confidence 89999999999998888887777665 58899999999999999999999888 999999988766554443332
Q ss_pred CcEEEechHHH-HHHHhcCC------cccCCccEEEEecccccccc---------------ccchhHHHHHHhhCCC---
Q 018420 96 PQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES---------------LDMRRDVQEIFKMTPH--- 150 (356)
Q Consensus 96 ~~i~v~T~~~l-~~~~~~~~------~~~~~~~~viiDE~H~~~~~---------------~~~~~~~~~~~~~~~~--- 150 (356)
++|+++|...| +.+++... ...+.+.+.||||++.+.=+ ......+..+...+..
T Consensus 170 ~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~ 249 (796)
T PRK12906 170 CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEA 249 (796)
T ss_pred CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhh
Confidence 48999999877 33444321 12456788999999988510 0000000011000000
Q ss_pred ----------------CC--------------------------------------------------------------
Q 018420 151 ----------------DK-------------------------------------------------------------- 152 (356)
Q Consensus 151 ----------------~~-------------------------------------------------------------- 152 (356)
..
T Consensus 250 ~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~ 329 (796)
T PRK12906 250 EDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDE 329 (796)
T ss_pred ccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeC
Confidence 00
Q ss_pred -----------------------------------------------cEEEEEecCccchHHHHHhhcCCCeEEEecccc
Q 018420 153 -----------------------------------------------QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA 185 (356)
Q Consensus 153 -----------------------------------------------~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (356)
++.+||+|......++. ..++-+... + +..
T Consensus 330 ~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~-~iY~l~vv~-I-Ptn 406 (796)
T PRK12906 330 FTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFR-EIYNMEVIT-I-PTN 406 (796)
T ss_pred CCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH-HHhCCCEEE-c-CCC
Confidence 24455555543322232 222222211 1 111
Q ss_pred ccccccceEEEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHh
Q 018420 186 KLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGF 263 (356)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 263 (356)
....+......+......+...+...+... .+.|+||||++++.++.++..|.+.+++...+|+++...++..+...+
T Consensus 407 kp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag 486 (796)
T PRK12906 407 RPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAG 486 (796)
T ss_pred CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcC
Confidence 122222223334445556666776666443 778999999999999999999999999999999998877777777666
Q ss_pred hcCCCcEEEEcCccccCCCCC---CCC-----EEEEecCCCChhhhhhccccccCCCCcceEEEEEccCC
Q 018420 264 KEGNKRILVATDLVGRGIDIE---RVN-----IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 325 (356)
Q Consensus 264 ~~~~~~vlv~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 325 (356)
+.|. |+|||+++++|+|++ .+. +||.++.|.|...+.|+.||+||.|.+|.+..+++..+
T Consensus 487 ~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 487 QRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 6666 999999999999995 677 99999999999999999999999999999999998653
No 96
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=4.6e-28 Score=226.50 Aligned_cols=307 Identities=19% Similarity=0.222 Sum_probs=222.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|++|+..+.++.+++++||||+|||.+.-.++...+..+. +++|..|.++|.+|-.+++....+.. .-.++.++|
T Consensus 123 fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL~TG 198 (1041)
T COG4581 123 FQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGLMTG 198 (1041)
T ss_pred HHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhhh-hhhccceec
Confidence 59999999999999999999999999998888887777665 69999999999999998887655433 335688888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+...+. ++.++|+|.+.|.+.+.++...+..+..||+||+|.+.+ ......+.+....++...+++++|||
T Consensus 199 Dv~IN~--------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D-~eRG~VWEE~Ii~lP~~v~~v~LSAT 269 (1041)
T COG4581 199 DVSINP--------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGD-RERGVVWEEVIILLPDHVRFVFLSAT 269 (1041)
T ss_pred ceeeCC--------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccc-cccchhHHHHHHhcCCCCcEEEEeCC
Confidence 766543 357888888999998888888889999999999999877 56677788888899888899999999
Q ss_pred CccchHHHHHhhc---CCCeEEEeccccccccccceE---EEEE-cChh-------------------------------
Q 018420 161 LSKEIRPVCKKFM---QDPMEIYVDDEAKLTLHGLVQ---HYIK-LSEL------------------------------- 202 (356)
Q Consensus 161 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~------------------------------- 202 (356)
.++. .++..|+. ..|..+......+.+...... ..+. ..+.
T Consensus 270 v~N~-~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~ 348 (1041)
T COG4581 270 VPNA-EEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVG 348 (1041)
T ss_pred CCCH-HHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccc
Confidence 9865 44444432 233333322221111110000 0000 0000
Q ss_pred ----------------HHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC--------------------------
Q 018420 203 ----------------EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC-------------------------- 240 (356)
Q Consensus 203 ----------------~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~-------------------------- 240 (356)
.....+...+......|+|+|+-++..|+..+..+...
T Consensus 349 ~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~e 428 (1041)
T COG4581 349 RYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEE 428 (1041)
T ss_pred cccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChh
Confidence 00122333333345568999999999998887666531
Q ss_pred --CC-------------CeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEec---------CCC
Q 018420 241 --NF-------------PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD---------MPD 296 (356)
Q Consensus 241 --~~-------------~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~---------~~~ 296 (356)
+. ....+|+++=+..+..+...|..|-++|+++|.+++.|+|+|--.+|+ .. ...
T Consensus 429 d~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K~dG~~~r~L 507 (1041)
T COG4581 429 DRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSKFDGNGHRWL 507 (1041)
T ss_pred hhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEEecCCceeec
Confidence 11 133578899999999999999999999999999999999999666555 22 124
Q ss_pred ChhhhhhccccccCCCCc--ceEEEEEc
Q 018420 297 SADTYLHRVGRAGRFGTK--GLAITFVS 322 (356)
Q Consensus 297 s~~~~~Q~~GR~~R~~~~--~~~~~~~~ 322 (356)
+..+|.|+.||+||.|.+ |.+++...
T Consensus 508 ~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 508 SPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred ChhHHHHhhhhhccccccccceEEEecC
Confidence 788999999999999876 45555433
No 97
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.96 E-value=1.3e-27 Score=225.44 Aligned_cols=319 Identities=18% Similarity=0.226 Sum_probs=203.9
Q ss_pred ccccHhhHhc---CC-cEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEE
Q 018420 2 QHECIPQAIL---GM-DVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 2 Q~~~~~~~~~---~~-~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~ 76 (356)
|..+++.+.+ .. .+++.||||+|||.+.+..+...... .....+++++.|++++.+++.+++++..+.. +....
T Consensus 200 ~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~-~~~~~ 278 (733)
T COG1203 200 QEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF-SVIGK 278 (733)
T ss_pred HHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-ccccc
Confidence 4455555544 34 67899999999999988877776665 3344589999999999999999999877654 22222
Q ss_pred EEEcCcchHHhHHH-------------HhcCCCcEEEechHHHHHH-HhcCCcc---cCCccEEEEeccccccccccchh
Q 018420 77 VFYGGVNIKIHKDL-------------LKNECPQIVVGTPGRILAL-ARDKDLS---LKNVRHFILDECDKMLESLDMRR 139 (356)
Q Consensus 77 ~~~~~~~~~~~~~~-------------~~~~~~~i~v~T~~~l~~~-~~~~~~~---~~~~~~viiDE~H~~~~~~~~~~ 139 (356)
..++.......... ....-..+.++|+...... ....... .-..+++|+||+|.+........
T Consensus 279 ~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~ 358 (733)
T COG1203 279 SLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAA 358 (733)
T ss_pred cccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHH
Confidence 13443322211110 0000012333344333331 1111111 11246799999999976322333
Q ss_pred HHHHHHhhCCCCCcEEEEEecCccchHHHHHhhcCCCeEEEecccccccccc--ceEE-EEEcChhHHHHHHHHHH-hcc
Q 018420 140 DVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHG--LVQH-YIKLSELEKNRKLNDLL-DAL 215 (356)
Q Consensus 140 ~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~-~~~ 215 (356)
....+......+.++++||||+|......+.....+...+............ .... ................. ...
T Consensus 359 l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (733)
T COG1203 359 LLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVK 438 (733)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhc
Confidence 3333333333567899999999999888888877766555443221100000 0000 11111110001122222 223
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhh----cCCCcEEEEcCccccCCCCCCCCEEEE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK----EGNKRILVATDLVGRGIDIERVNIVIN 291 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~vlv~t~~~~~G~d~~~~~~vi~ 291 (356)
.+++++|.||++..|..++..|+..+.++..+||.+...+|.+.++.+. .+...|+|||++++.|+|+ +.+++|
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mI- 516 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLI- 516 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeee-
Confidence 5689999999999999999999998888999999999999998887554 4678899999999999999 477775
Q ss_pred ecCCCChhhhhhccccccCCC--CcceEEEEEccC
Q 018420 292 YDMPDSADTYLHRVGRAGRFG--TKGLAITFVSSA 324 (356)
Q Consensus 292 ~~~~~s~~~~~Q~~GR~~R~~--~~~~~~~~~~~~ 324 (356)
..+...++++||+||++|.| .+|.++++....
T Consensus 517 -Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 517 -TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred -ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 33567889999999999999 566677666643
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=2.7e-28 Score=215.69 Aligned_cols=311 Identities=19% Similarity=0.233 Sum_probs=224.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|++|+.-+-++.+++|.|.|.+|||.++-.++...+..+. +|+|-+|-++|.+|-++++..-++ .|+..+|
T Consensus 133 FQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~-----DVGLMTG 204 (1041)
T KOG0948|consen 133 FQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK-----DVGLMTG 204 (1041)
T ss_pred hHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc-----ccceeec
Confidence 58899999999999999999999999998888888887665 899999999999999887765443 5666677
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+...... +.-+|+|.+.|.+.+-++..-.+.+.+||+||+|.+-+ ......+.+-+-.++.+.+.+++|||
T Consensus 205 DVTInP~--------ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRD-kERGVVWEETIIllP~~vr~VFLSAT 275 (1041)
T KOG0948|consen 205 DVTINPD--------ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRD-KERGVVWEETIILLPDNVRFVFLSAT 275 (1041)
T ss_pred ceeeCCC--------CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccc-cccceeeeeeEEeccccceEEEEecc
Confidence 6654432 46788999999888877777788999999999999876 55566677777888899999999999
Q ss_pred CccchHHHHHh---hcCCCeEEEeccccccccccceE-----E-EEEcChh------H----------------------
Q 018420 161 LSKEIRPVCKK---FMQDPMEIYVDDEAKLTLHGLVQ-----H-YIKLSEL------E---------------------- 203 (356)
Q Consensus 161 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~------~---------------------- 203 (356)
+|+. .+++.| .-..|+.+......+.+.+...- . |.-..+. .
T Consensus 276 iPNA-~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~ 354 (1041)
T KOG0948|consen 276 IPNA-RQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANK 354 (1041)
T ss_pred CCCH-HHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccc
Confidence 9975 344444 34456554433332222221100 0 0000000 0
Q ss_pred ---------------HHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCC---------------------------
Q 018420 204 ---------------KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN--------------------------- 241 (356)
Q Consensus 204 ---------------~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~--------------------------- 241 (356)
....+...+-.....|+|||+-+++.|+.++-.+....
T Consensus 355 k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~ 434 (1041)
T KOG0948|consen 355 KGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRE 434 (1041)
T ss_pred ccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhcc
Confidence 01112222222244689999999999999987766521
Q ss_pred ------------CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecC--------CCChhhh
Q 018420 242 ------------FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM--------PDSADTY 301 (356)
Q Consensus 242 ------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~--------~~s~~~~ 301 (356)
.....+|+++=+--+..+.-.|..|-+++|+||.+.+.|+|.|.-.+|+..-. .-|-.+|
T Consensus 435 LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEY 514 (1041)
T KOG0948|consen 435 LPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEY 514 (1041)
T ss_pred chHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccce
Confidence 13556789999988888888999999999999999999999986655552211 1266789
Q ss_pred hhccccccCCCCc--ceEEEEEccCCChHH
Q 018420 302 LHRVGRAGRFGTK--GLAITFVSSASDSDI 329 (356)
Q Consensus 302 ~Q~~GR~~R~~~~--~~~~~~~~~~~~~~~ 329 (356)
+|+.||+||.|.+ |.|++.++...+...
T Consensus 515 IQMSGRAGRRG~DdrGivIlmiDekm~~~~ 544 (1041)
T KOG0948|consen 515 IQMSGRAGRRGIDDRGIVILMIDEKMEPQV 544 (1041)
T ss_pred EEecccccccCCCCCceEEEEecCcCCHHH
Confidence 9999999999875 566677776555443
No 99
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.95 E-value=3.5e-26 Score=213.68 Aligned_cols=302 Identities=17% Similarity=0.176 Sum_probs=177.3
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 92 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 92 (356)
+..++++|||||||++++..+...... ...+++++++|+.+|..|+.+.+..+.... . .+..+.......+.
T Consensus 264 ~~gli~~~TGsGKT~t~~~la~~l~~~-~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~--~-----~~~~s~~~L~~~l~ 335 (667)
T TIGR00348 264 RGGLIWHTQGSGKTLTMLFAARKALEL-LKNPKVFFVVDRRELDYQLMKEFQSLQKDC--A-----ERIESIAELKRLLE 335 (667)
T ss_pred ceeEEEEecCCCccHHHHHHHHHHHhh-cCCCeEEEEECcHHHHHHHHHHHHhhCCCC--C-----cccCCHHHHHHHHh
Confidence 578999999999998876655544432 333489999999999999999998875311 1 11112222233444
Q ss_pred cCCCcEEEechHHHHHHHhcC--CcccCCc-cEEEEeccccccccccchhHHHHHH-hhCCCCCcEEEEEecCccchH--
Q 018420 93 NECPQIVVGTPGRILALARDK--DLSLKNV-RHFILDECDKMLESLDMRRDVQEIF-KMTPHDKQVMMFSATLSKEIR-- 166 (356)
Q Consensus 93 ~~~~~i~v~T~~~l~~~~~~~--~~~~~~~-~~viiDE~H~~~~~~~~~~~~~~~~-~~~~~~~~~i~~SaT~~~~~~-- 166 (356)
.....|+|+|.++|...+... ....... .+||+||||+... ..+...+ ..+ ++...+++||||.....
T Consensus 336 ~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~-----~~~~~~l~~~~-p~a~~lGfTaTP~~~~d~~ 409 (667)
T TIGR00348 336 KDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY-----GELAKNLKKAL-KNASFFGFTGTPIFKKDRD 409 (667)
T ss_pred CCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc-----hHHHHHHHhhC-CCCcEEEEeCCCccccccc
Confidence 444689999999997643321 1111112 2799999997643 2333333 344 45679999999964211
Q ss_pred --HHHHhhcCCCeEEEeccccccccccceEE--EEE------c--------------------ChhH-------------
Q 018420 167 --PVCKKFMQDPMEIYVDDEAKLTLHGLVQH--YIK------L--------------------SELE------------- 203 (356)
Q Consensus 167 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~--------------------~~~~------------- 203 (356)
.......+++...+.- ........... |.. . .+..
T Consensus 410 t~~~f~~~fg~~i~~Y~~--~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 487 (667)
T TIGR00348 410 TSLTFAYVFGRYLHRYFI--TDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKK 487 (667)
T ss_pred ccccccCCCCCeEEEeeH--HHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHh
Confidence 1111111122211100 00000000000 000 0 0000
Q ss_pred ------H-HHHHHHHH----hc--cCCCeEEEEecchhhHHHHHHHHHhC-----CCCeEEEecCCCHH-----------
Q 018420 204 ------K-NRKLNDLL----DA--LDFNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQE----------- 254 (356)
Q Consensus 204 ------~-~~~~~~~~----~~--~~~~~~ivf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~----------- 254 (356)
. ......++ .. ...++++|+|.++..|..+++.|.+. +...+.+++..+..
T Consensus 488 ~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~ 567 (667)
T TIGR00348 488 ILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIR 567 (667)
T ss_pred hhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhc
Confidence 0 00000111 11 12479999999999999999888664 23444555443221
Q ss_pred ----------HHHHHHHHhhc-CCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCC-CCcceEEEEEc
Q 018420 255 ----------ERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF-GTKGLAITFVS 322 (356)
Q Consensus 255 ----------~~~~~~~~f~~-~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-~~~~~~~~~~~ 322 (356)
...++++.|+. +.++|||+++++.+|+|.|.++++++..+..+. .++|.+||+.|. ........+++
T Consensus 568 ~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvD 646 (667)
T TIGR00348 568 TKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVD 646 (667)
T ss_pred cccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEE
Confidence 22467788865 688999999999999999999999988876765 589999999994 44444444555
Q ss_pred cCCChHHHH
Q 018420 323 SASDSDILN 331 (356)
Q Consensus 323 ~~~~~~~~~ 331 (356)
.....+.++
T Consensus 647 y~g~~~~l~ 655 (667)
T TIGR00348 647 YRGLEKSLI 655 (667)
T ss_pred CcChHHHHH
Confidence 444444333
No 100
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=3.3e-27 Score=191.40 Aligned_cols=176 Identities=41% Similarity=0.715 Sum_probs=152.1
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC--CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN--PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~--~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|.++++.+.+++++++++|||+|||++++++++..+... .++++++|++|+++|+.|+.+.++.+.... ++.+..+
T Consensus 25 ~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~-~~~~~~~ 103 (203)
T cd00268 25 IQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT-NLKVVVI 103 (203)
T ss_pred HHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC-CceEEEE
Confidence 4899999999999999999999999999999988887766 455689999999999999999999887664 7888899
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
.|+.......+... ...+|+|+|++.+...+.+....+.+++++|+||+|.+.+ .++...+..+...++..++++++|
T Consensus 104 ~~~~~~~~~~~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~-~~~~~~~~~~~~~l~~~~~~~~~S 181 (203)
T cd00268 104 YGGTSIDKQIRKLK-RGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD-MGFEDQIREILKLLPKDRQTLLFS 181 (203)
T ss_pred ECCCCHHHHHHHhc-CCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc-cChHHHHHHHHHhCCcccEEEEEe
Confidence 99887766655554 3368999999999998888878888999999999999875 667788888888888889999999
Q ss_pred ecCccchHHHHHhhcCCCeEE
Q 018420 159 ATLSKEIRPVCKKFMQDPMEI 179 (356)
Q Consensus 159 aT~~~~~~~~~~~~~~~~~~~ 179 (356)
||+++........++.+|..+
T Consensus 182 AT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 182 ATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccCCHHHHHHHHHHCCCCEEe
Confidence 999998888888888888654
No 101
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.95 E-value=5.5e-26 Score=211.20 Aligned_cols=302 Identities=17% Similarity=0.186 Sum_probs=217.4
Q ss_pred ccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcc
Q 018420 4 ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 83 (356)
Q Consensus 4 ~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~ 83 (356)
+.+.++.+++.++|.+|||||||+..-...++... ... .++.+.-|+|--+...++++.+-.+...|-.|++..-.++
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~-g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~ 134 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIA-GKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFES 134 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccC-CeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeec
Confidence 45667777889999999999999876666665554 222 2788999999888888888887666555666666443322
Q ss_pred hHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhH-HHHHHhhCCCCCcEEEEEecCc
Q 018420 84 IKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRD-VQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~-~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
.. +..+.|-++|...|+..+.+... ++.+++||+||+|+-+-..++.-. +..+....+++.++|.||||+.
T Consensus 135 ~~-------s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld 206 (845)
T COG1643 135 KV-------SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLD 206 (845)
T ss_pred cC-------CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccC
Confidence 21 22368999999999998875553 689999999999987655555544 3454666666799999999988
Q ss_pred cchHHHHHhhcCCCeEEEeccccccccccceEEEEEcC-hhH-HHHHHHHHH---hccCCCeEEEEecchhhHHHHHHHH
Q 018420 163 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELE-KNRKLNDLL---DALDFNQVVIFVKSVSRAAELNKLL 237 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~---~~~~~~~~ivf~~~~~~~~~~~~~l 237 (356)
.+ .+..++++...+.+....- .+...|.... ... ....+...+ .....+.++||.+.....+..++.|
T Consensus 207 ~~---rfs~~f~~apvi~i~GR~f----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L 279 (845)
T COG1643 207 AE---RFSAYFGNAPVIEIEGRTY----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWL 279 (845)
T ss_pred HH---HHHHHcCCCCEEEecCCcc----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHH
Confidence 54 3445555433333322211 1122221111 111 222222222 2335688999999999999999999
Q ss_pred Hh----CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecC------------------C
Q 018420 238 VE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM------------------P 295 (356)
Q Consensus 238 ~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~------------------~ 295 (356)
.+ ....+..+||.++..++.++++.-..|..+|++||+++++++.+|++..||.-+. |
T Consensus 280 ~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ 359 (845)
T COG1643 280 EKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEP 359 (845)
T ss_pred HhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEE
Confidence 98 2356777999999999999887777776779999999999999999999996663 3
Q ss_pred CChhhhhhccccccCCCCcceEEEEEcc
Q 018420 296 DSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 296 ~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
-|..+..||.||+||.+ +|.|+-+++.
T Consensus 360 ISqAsA~QRaGRAGR~~-pGicyRLyse 386 (845)
T COG1643 360 ISKASADQRAGRAGRTG-PGICYRLYSE 386 (845)
T ss_pred echhhhhhhccccccCC-CceEEEecCH
Confidence 37888999999999974 9999999985
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.4e-25 Score=207.04 Aligned_cols=301 Identities=18% Similarity=0.224 Sum_probs=212.3
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 93 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 93 (356)
.-+..++||+|||+++.++++.....+. .+.|++|+..|+.|.++++..+...+ |+.++++.++.+.... ...
T Consensus 97 G~IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~~~l-Glsv~~i~~~~~~~~r---~~~ 169 (908)
T PRK13107 97 NRIAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLFEFL-GLTVGINVAGLGQQEK---KAA 169 (908)
T ss_pred CccccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEecCCCCHHHH---Hhc
Confidence 3588999999999999998887665544 58999999999999999999988887 9999999988775332 222
Q ss_pred CCCcEEEechHHH-HHHHhcC-Cccc-----CCccEEEEecccccccccc---------------chhHHH----HHHhh
Q 018420 94 ECPQIVVGTPGRI-LALARDK-DLSL-----KNVRHFILDECDKMLESLD---------------MRRDVQ----EIFKM 147 (356)
Q Consensus 94 ~~~~i~v~T~~~l-~~~~~~~-~~~~-----~~~~~viiDE~H~~~~~~~---------------~~~~~~----~~~~~ 147 (356)
..++|+++|+..| +.+++.. .... +.+.++||||++.+.-+.. ....+. .+...
T Consensus 170 Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~ 249 (908)
T PRK13107 170 YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQ 249 (908)
T ss_pred CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhh
Confidence 2359999999999 8887766 3332 6788999999998862100 000000 00000
Q ss_pred ------------------------------------C----------------------------------CCCC-----
Q 018420 148 ------------------------------------T----------------------------------PHDK----- 152 (356)
Q Consensus 148 ------------------------------------~----------------------------------~~~~----- 152 (356)
+ ..+.
T Consensus 250 ~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~ 329 (908)
T PRK13107 250 DKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQ 329 (908)
T ss_pred hhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 0 0000
Q ss_pred --------------------------------------------------------cEEEEEecCccchHHHHHhhcCCC
Q 018420 153 --------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQDP 176 (356)
Q Consensus 153 --------------------------------------------------------~~i~~SaT~~~~~~~~~~~~~~~~ 176 (356)
++-+||+|......++...+..+.
T Consensus 330 dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~V 409 (908)
T PRK13107 330 DNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDT 409 (908)
T ss_pred CCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCE
Confidence 234444444433222222221111
Q ss_pred eEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHH
Q 018420 177 MEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQE 254 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 254 (356)
...+......+......+......+...+..-+... .+.|+||||.+++.++.++..|...+++...+|+..++.
T Consensus 410 ---v~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~ 486 (908)
T PRK13107 410 ---VVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHER 486 (908)
T ss_pred ---EECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHH
Confidence 111111122222222233444455555555444432 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEcCccccCCCCCCC-------------------------------------CEEEEecCCCC
Q 018420 255 ERLTRYKGFKEGNKRILVATDLVGRGIDIERV-------------------------------------NIVINYDMPDS 297 (356)
Q Consensus 255 ~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~-------------------------------------~~vi~~~~~~s 297 (356)
++..+.+.|+.|. |+|||+++++|+|+.-- -+||....+.|
T Consensus 487 Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheS 564 (908)
T PRK13107 487 EAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHES 564 (908)
T ss_pred HHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCch
Confidence 9999999999998 99999999999999632 16777788889
Q ss_pred hhhhhhccccccCCCCcceEEEEEccCCC
Q 018420 298 ADTYLHRVGRAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 298 ~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 326 (356)
..--.|..||+||+|.+|.+..+++-+++
T Consensus 565 rRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 565 RRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 99999999999999999999999886444
No 103
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=1.1e-26 Score=182.99 Aligned_cols=163 Identities=24% Similarity=0.454 Sum_probs=133.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|+++++.+.+++++++.+|||+|||++++.+++..+.+. ...++++++|+++|++|..+++..+... .+.++..+++
T Consensus 3 ~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~ 80 (169)
T PF00270_consen 3 LQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLHG 80 (169)
T ss_dssp HHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEEST
T ss_pred HHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccc-cccccccccc
Confidence 4899999999999999999999999999999999887766 3338999999999999999999998876 3788999998
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCC--CCCcEEEEE
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP--HDKQVMMFS 158 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~--~~~~~i~~S 158 (356)
+.............+++|+|+||++|...+......+..+++||+||+|.+..+ .+...+..+..... .+.+++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 887653333333444799999999999988876557777999999999999873 55666666666653 358899999
Q ss_pred ecCccchH
Q 018420 159 ATLSKEIR 166 (356)
Q Consensus 159 aT~~~~~~ 166 (356)
||++..++
T Consensus 160 AT~~~~~~ 167 (169)
T PF00270_consen 160 ATLPSNVE 167 (169)
T ss_dssp SSSTHHHH
T ss_pred eCCChhHh
Confidence 99985443
No 104
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=4e-25 Score=204.38 Aligned_cols=125 Identities=18% Similarity=0.292 Sum_probs=106.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+..+++++..++||+|||++|+++++..+..+. .+++++|+++|+.|.++.+..+.... ++.+..+.|
T Consensus 96 ~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~G 171 (970)
T PRK12899 96 YDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVS 171 (970)
T ss_pred HHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeC
Confidence 36788999999999999999999999999999997665432 47899999999999999999988776 899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHH-HHHHhcCCcccC-------CccEEEEecccccc
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKDLSLK-------NVRHFILDECDKML 132 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~~~~~-------~~~~viiDE~H~~~ 132 (356)
+.+...+...+ .++|+|+||..| +.+++...+..+ .+.++|+|||+.+.
T Consensus 172 G~~~~eq~~~y---~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 172 GSPLEKRKEIY---QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CCCHHHHHHHc---CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 98888776554 269999999999 998887755544 56899999999986
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.6e-25 Score=205.20 Aligned_cols=308 Identities=21% Similarity=0.225 Sum_probs=205.0
Q ss_pred ccccHhhHhcC----CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEE
Q 018420 2 QHECIPQAILG----MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 77 (356)
Q Consensus 2 Q~~~~~~~~~~----~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~ 77 (356)
|..|++.+.+. +..++.+.||||||-+|+-++...+.+++ .+++++|-++|..|+.++++..+ +.++..
T Consensus 203 Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF----g~~v~v 275 (730)
T COG1198 203 QQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF----GAKVAV 275 (730)
T ss_pred HHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh----CCChhh
Confidence 66777777665 56899999999999999999999988876 69999999999999999999776 567888
Q ss_pred EEcCcchHHhH---HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccccc-----chhHHHHHHhhCC
Q 018420 78 FYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD-----MRRDVQEIFKMTP 149 (356)
Q Consensus 78 ~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~-----~~~~~~~~~~~~~ 149 (356)
+|++.+..... ....++...|+|+|-..++ .++.++++|||||=|..+.... ..+.+..+....
T Consensus 276 lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~- 347 (730)
T COG1198 276 LHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK- 347 (730)
T ss_pred hcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH-
Confidence 88876654433 3344577899999998887 6789999999999998764422 223444444443
Q ss_pred CCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccc-c-ccccceEEEEEcChhH----HHHHHHHHHhcc-CCCeEEE
Q 018420 150 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK-L-TLHGLVQHYIKLSELE----KNRKLNDLLDAL-DFNQVVI 222 (356)
Q Consensus 150 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~iv 222 (356)
.++++|+-||||.-+....+.. +............ . .......++....... ....+..+-+.. .+.++|+
T Consensus 348 ~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~ll 425 (730)
T COG1198 348 ENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLL 425 (730)
T ss_pred hCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEE
Confidence 5688999999998654444322 2111221111111 0 1111111111111111 112222222222 4467777
Q ss_pred EecchhhHHH------------------------------------------------------------HHHHHHhC--
Q 018420 223 FVKSVSRAAE------------------------------------------------------------LNKLLVEC-- 240 (356)
Q Consensus 223 f~~~~~~~~~------------------------------------------------------------~~~~l~~~-- 240 (356)
|.|.+..+.. +.+.|++.
T Consensus 426 flnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP 505 (730)
T COG1198 426 FLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFP 505 (730)
T ss_pred EEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCC
Confidence 7777555433 33333332
Q ss_pred CCCeEEEecCCC--HHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC------------Chhhhhhccc
Q 018420 241 NFPSICIHSGMS--QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------------SADTYLHRVG 306 (356)
Q Consensus 241 ~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~G 306 (356)
+.+++.+.++.+ +..-+..+..|.+|+.+|||+|+++..|.|+|++..|...+... ....+.|..|
T Consensus 506 ~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaG 585 (730)
T COG1198 506 GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAG 585 (730)
T ss_pred CCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHh
Confidence 334444444433 34466778999999999999999999999999999888776432 3445679999
Q ss_pred cccCCCCcceEEEEEccCCC
Q 018420 307 RAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 307 R~~R~~~~~~~~~~~~~~~~ 326 (356)
|+||.+.+|.+++-+...+.
T Consensus 586 RAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 586 RAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred hhccCCCCCeEEEEeCCCCc
Confidence 99999999999888775443
No 106
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.94 E-value=9.2e-25 Score=192.41 Aligned_cols=302 Identities=15% Similarity=0.161 Sum_probs=210.3
Q ss_pred ccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcc
Q 018420 4 ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 83 (356)
Q Consensus 4 ~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~ 83 (356)
+.+..+.+++-++|.|+||||||+..--.+.+..-...+ ++-+.-|+|--+-.++.+...-.+...|-.|++..--.+
T Consensus 58 ~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed 135 (674)
T KOG0922|consen 58 QILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFED 135 (674)
T ss_pred HHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecc
Confidence 456677778889999999999998755555444443333 588888999888888888775444333556665443222
Q ss_pred hHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCcc
Q 018420 84 IKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 163 (356)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 163 (356)
.. +..+.|.+.|-..|++...... .++++++||+||||.-.-..+....+.+-.-...++.++|.+|||+..
T Consensus 136 ~t-------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda 207 (674)
T KOG0922|consen 136 ST-------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDA 207 (674)
T ss_pred cC-------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecH
Confidence 22 1236899999999998665443 468999999999997654344333333333333456789999999874
Q ss_pred chHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHH----HHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh
Q 018420 164 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKN----RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
+.+..++.....+.+.... . .+...|...+..+-. ..+..+....+.+.++||....++.+..++.|.+
T Consensus 208 ---~kfS~yF~~a~i~~i~GR~-f---PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e 280 (674)
T KOG0922|consen 208 ---EKFSEYFNNAPILTIPGRT-F---PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRE 280 (674)
T ss_pred ---HHHHHHhcCCceEeecCCC-C---ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 3445555553333332221 1 112223222222211 2222333345668899999999999999999887
Q ss_pred C----C----CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecC-----------------
Q 018420 240 C----N----FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM----------------- 294 (356)
Q Consensus 240 ~----~----~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~----------------- 294 (356)
. + ..+..+||.++.+++.++++.-..|..+|+++|+++++.+.+|+...||.-+.
T Consensus 281 ~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v 360 (674)
T KOG0922|consen 281 RAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIV 360 (674)
T ss_pred HhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeE
Confidence 5 1 12356899999999999988888899999999999999999999999996552
Q ss_pred -CCChhhhhhccccccCCCCcceEEEEEcc
Q 018420 295 -PDSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 295 -~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
|-|..+-.||.||+||.+ +|.|+-++..
T Consensus 361 ~~ISkasA~QRaGRAGRt~-pGkcyRLYte 389 (674)
T KOG0922|consen 361 VPISKASANQRAGRAGRTG-PGKCYRLYTE 389 (674)
T ss_pred EechHHHHhhhcccCCCCC-CceEEEeeeH
Confidence 348889999999999975 9999999985
No 107
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.93 E-value=4.9e-25 Score=198.69 Aligned_cols=305 Identities=18% Similarity=0.225 Sum_probs=190.4
Q ss_pred ccccHhhHhc----C-CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEE
Q 018420 2 QHECIPQAIL----G-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 2 Q~~~~~~~~~----~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~ 76 (356)
|..|+..+.+ | +.+|+++.||+|||.+++ +++..+.+.....+||+++.+++|+.|....+..+.... ..+.
T Consensus 170 Q~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~--~~~n 246 (875)
T COG4096 170 QIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG--TKMN 246 (875)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc--ccee
Confidence 5556555543 4 458999999999998854 444444444333489999999999999988887776442 2333
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC-----CcccCCccEEEEeccccccccccchhHHHHHHhhCCCC
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-----DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 151 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-----~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 151 (356)
.+.+.... .+++|+++|++++....... .+....+|+|||||||+-+. .....++..+..
T Consensus 247 ~i~~~~~~---------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~-----~~~~~I~dYFdA- 311 (875)
T COG4096 247 KIEDKKGD---------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY-----SEWSSILDYFDA- 311 (875)
T ss_pred eeecccCC---------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH-----hhhHHHHHHHHH-
Confidence 33332111 13589999999998876644 23455699999999997543 334455555432
Q ss_pred CcEEEEEecCccchHHHHHhhc-CCCeEEEeccc--------------------------------cccccccc--eEEE
Q 018420 152 KQVMMFSATLSKEIRPVCKKFM-QDPMEIYVDDE--------------------------------AKLTLHGL--VQHY 196 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~-~~~~~~~~~~~--------------------------------~~~~~~~~--~~~~ 196 (356)
-.+++||||.+.....--.++ +.|...+.... ....-+.+ ....
T Consensus 312 -~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~ 390 (875)
T COG4096 312 -ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQN 390 (875)
T ss_pred -HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccccc
Confidence 245569999774332222233 44444431000 00000000 0000
Q ss_pred EEcChh-------HHH----HHHHHHHhc--c--CCCeEEEEecchhhHHHHHHHHHhC-----CCCeEEEecCCCHHHH
Q 018420 197 IKLSEL-------EKN----RKLNDLLDA--L--DFNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEER 256 (356)
Q Consensus 197 ~~~~~~-------~~~----~~~~~~~~~--~--~~~~~ivf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~ 256 (356)
....+. ... ..+.+.+.. . ..+|+||||.+..+|+.+...|... +.-+..+.++..+..
T Consensus 391 ~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q- 469 (875)
T COG4096 391 FEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ- 469 (875)
T ss_pred ccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH-
Confidence 000000 011 122233333 1 1468999999999999999998875 344555666544333
Q ss_pred HHHHHHhhcC--CCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCC-------CcceEEEEEccCCCh
Q 018420 257 LTRYKGFKEG--NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG-------TKGLAITFVSSASDS 327 (356)
Q Consensus 257 ~~~~~~f~~~--~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~-------~~~~~~~~~~~~~~~ 327 (356)
..++.|... -.+|.++++++.+|+|+|.|..++++....|...|.|++||+-|.. ++...+.+++..+.-
T Consensus 470 -~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~ 548 (875)
T COG4096 470 -ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNT 548 (875)
T ss_pred -HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhhhhh
Confidence 335556543 3468889999999999999999999999999999999999999953 234567777654443
No 108
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.92 E-value=2.1e-23 Score=185.59 Aligned_cols=324 Identities=21% Similarity=0.296 Sum_probs=212.9
Q ss_pred ccccHhhHh----cCCcEEEEccCCCccchHhHH--HhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 2 QHECIPQAI----LGMDVICQAKSGMGKTAVFVL--STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 2 Q~~~~~~~~----~~~~~li~~~tGsGKT~~~~~--~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
|.+.++.+. .|-+.|+...+|-|||+..+. ..+.... +-.+ +.+|+||... ..+|..++++|+ |++++
T Consensus 172 QveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~-~~~G-PfLVi~P~St-L~NW~~Ef~rf~---P~l~~ 245 (971)
T KOG0385|consen 172 QLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRK-GIPG-PFLVIAPKST-LDNWMNEFKRFT---PSLNV 245 (971)
T ss_pred hhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhc-CCCC-CeEEEeeHhh-HHHHHHHHHHhC---CCcce
Confidence 445555544 367899999999999965432 2222222 2222 5899999765 566999999887 68899
Q ss_pred EEEEcCcchH--HhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCc
Q 018420 76 AVFYGGVNIK--IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ 153 (356)
Q Consensus 76 ~~~~~~~~~~--~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~ 153 (356)
..++|+.... ...+.+..+..+|+|||++..+.--. .+.--.++++||||||++.+ ....+.+.+..+... .
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~--~lk~~~W~ylvIDEaHRiKN---~~s~L~~~lr~f~~~-n 319 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS--FLKKFNWRYLVIDEAHRIKN---EKSKLSKILREFKTD-N 319 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH--HHhcCCceEEEechhhhhcc---hhhHHHHHHHHhccc-c
Confidence 9999976422 22233445678999999999876322 22223578899999999955 344555666555433 3
Q ss_pred EEEEEecCccc-h------------------HHHHHhhc----------------------------------CCC--eE
Q 018420 154 VMMFSATLSKE-I------------------RPVCKKFM----------------------------------QDP--ME 178 (356)
Q Consensus 154 ~i~~SaT~~~~-~------------------~~~~~~~~----------------------------------~~~--~~ 178 (356)
.+++|+||-.+ + +.+-.++. ... ..
T Consensus 320 rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~ 399 (971)
T KOG0385|consen 320 RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELI 399 (971)
T ss_pred eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceee
Confidence 78999998332 0 00000000 000 00
Q ss_pred EEe----------------------ccc--ccccccc--------ceEEEEE---------------cChhHHHHHHHHH
Q 018420 179 IYV----------------------DDE--AKLTLHG--------LVQHYIK---------------LSELEKNRKLNDL 211 (356)
Q Consensus 179 ~~~----------------------~~~--~~~~~~~--------~~~~~~~---------------~~~~~~~~~~~~~ 211 (356)
+++ ... ......+ ..+.|.. +.+..+...+..+
T Consensus 400 iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkL 479 (971)
T KOG0385|consen 400 IYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKL 479 (971)
T ss_pred EeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHH
Confidence 000 000 0000000 0011110 0111233344555
Q ss_pred Hhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCC---CcEEEEcCccccCCCCCCC
Q 018420 212 LDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN---KRILVATDLVGRGIDIERV 286 (356)
Q Consensus 212 ~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~vlv~t~~~~~G~d~~~~ 286 (356)
+... .+.+++||..--.....+.+++.-+++....+.|.++.++|.+.++.|.... .-.|++|.+.+.|+|+-.+
T Consensus 480 L~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aA 559 (971)
T KOG0385|consen 480 LPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAA 559 (971)
T ss_pred HHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccc
Confidence 5443 6689999999999999999999999999999999999999999999998764 3368999999999999999
Q ss_pred CEEEEecCCCChhhhhhccccccCCCCcceEEEE--Ec-cCCChHHHHHHHHHh
Q 018420 287 NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF--VS-SASDSDILNQVQARF 337 (356)
Q Consensus 287 ~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~--~~-~~~~~~~~~~~~~~~ 337 (356)
++||+||..|++..-.|..-|++|-|+...|.++ +. ..-++.+++....++
T Consensus 560 DtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 560 DTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred cEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 9999999999999999999999999998887655 22 233444445444443
No 109
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=8.3e-23 Score=187.42 Aligned_cols=275 Identities=19% Similarity=0.276 Sum_probs=192.8
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEE-EEc
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV-FYG 80 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~-~~~ 80 (356)
|+-....+.+|+++-+.||||.|||+..++..+-...+++ ++++|+||..|+.|..+.+.++.....+..+.. +|+
T Consensus 87 QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgk---r~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~ 163 (1187)
T COG1110 87 QRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGK---RVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHS 163 (1187)
T ss_pred HHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCC---eEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeecc
Confidence 5556667788999999999999999776666665555443 899999999999999999999875543344333 677
Q ss_pred CcchH---HhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccccc----------ch---------
Q 018420 81 GVNIK---IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD----------MR--------- 138 (356)
Q Consensus 81 ~~~~~---~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~----------~~--------- 138 (356)
..... +..+.+.+++.+|+|+|.+-+...++.-.. -++++|++|+++.+.-... +.
T Consensus 164 ~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~ 241 (1187)
T COG1110 164 ALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYE 241 (1187)
T ss_pred ccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHH
Confidence 64443 345667788899999999888765543221 4789999999998863211 00
Q ss_pred --------------hHHHHHHh--------hCCCCCcEEEEEecCccch--HHHHHhhcCCCeEEEeccccccccccceE
Q 018420 139 --------------RDVQEIFK--------MTPHDKQVMMFSATLSKEI--RPVCKKFMQDPMEIYVDDEAKLTLHGLVQ 194 (356)
Q Consensus 139 --------------~~~~~~~~--------~~~~~~~~i~~SaT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (356)
..+.+... .-....+++..|||..+.- ......+++... .......+++..
T Consensus 242 ~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev-----G~~~~~LRNIvD 316 (1187)
T COG1110 242 LIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV-----GSGGEGLRNIVD 316 (1187)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc-----Cccchhhhheee
Confidence 00111100 1123356999999976532 233344443221 112233455555
Q ss_pred EEEEcChhHHHHHHHHHHhccCCCeEEEEecc---hhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEE
Q 018420 195 HYIKLSELEKNRKLNDLLDALDFNQVVIFVKS---VSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 271 (356)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vl 271 (356)
.|... ........+++... ..+|||++. ++.++.+++.|+.+|+++..+|++ ..+.++.|..|++++|
T Consensus 317 ~y~~~---~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvL 387 (1187)
T COG1110 317 IYVES---ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVL 387 (1187)
T ss_pred eeccC---ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEE
Confidence 55554 33455556666665 468999999 999999999999999999999983 3667899999999999
Q ss_pred EEc----CccccCCCCCC-CCEEEEecCC
Q 018420 272 VAT----DLVGRGIDIER-VNIVINYDMP 295 (356)
Q Consensus 272 v~t----~~~~~G~d~~~-~~~vi~~~~~ 295 (356)
|++ ..+.+|+|+|. +..+|+++.|
T Consensus 388 VGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 388 VGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEecccccceeecCCchhheeEEEEecCC
Confidence 877 56889999997 7788888876
No 110
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=2.8e-23 Score=189.33 Aligned_cols=331 Identities=18% Similarity=0.238 Sum_probs=213.6
Q ss_pred ccccH--hhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 2 QHECI--PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~--~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
|.+++ +.++.+++.+..+||+.|||+++-+.++........ .++.+.|-.+.++.-...+..+.... |+++..+.
T Consensus 228 q~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vsiv~Ek~~~l~~~~~~~-G~~ve~y~ 304 (1008)
T KOG0950|consen 228 QAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVSIVQEKISALSPFSIDL-GFPVEEYA 304 (1008)
T ss_pred HHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceeehhHHHHhhhhhhcccc-CCcchhhc
Confidence 44443 456678999999999999999887766665544333 68999999988888777777777776 88888888
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhc--CCcccCCccEEEEeccccccccccchhHHHHHH-----hhCCCCC
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARD--KDLSLKNVRHFILDECDKMLESLDMRRDVQEIF-----KMTPHDK 152 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~-----~~~~~~~ 152 (356)
|........+ .-.+.|||.++-..+... +.-.+..+++|||||.|.+.+ .+....+..+. .......
T Consensus 305 g~~~p~~~~k-----~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d-~~rg~~lE~~l~k~~y~~~~~~~ 378 (1008)
T KOG0950|consen 305 GRFPPEKRRK-----RESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD-KGRGAILELLLAKILYENLETSV 378 (1008)
T ss_pred ccCCCCCccc-----ceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec-cccchHHHHHHHHHHHhccccce
Confidence 6544332221 137999999987665542 122346788999999999987 44444433332 2222336
Q ss_pred cEEEEEecCccchHHHHHhhcCCCeEEEeccccccccc---cceEEEEEcChhHHH----------------HHHHHHHh
Q 018420 153 QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH---GLVQHYIKLSELEKN----------------RKLNDLLD 213 (356)
Q Consensus 153 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----------------~~~~~~~~ 213 (356)
|+|+||||+++. ..+..++....+.. ...+.... ..-............ +.+..+..
T Consensus 379 ~iIGMSATi~N~--~lL~~~L~A~~y~t--~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~t 454 (1008)
T KOG0950|consen 379 QIIGMSATIPNN--SLLQDWLDAFVYTT--RFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCT 454 (1008)
T ss_pred eEeeeecccCCh--HHHHHHhhhhheec--ccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehh
Confidence 799999999864 23333332211111 11110000 000111111000000 11111111
Q ss_pred c-c-CCCeEEEEecchhhHHHHHHHHHh--------------------------------------CCCCeEEEecCCCH
Q 018420 214 A-L-DFNQVVIFVKSVSRAAELNKLLVE--------------------------------------CNFPSICIHSGMSQ 253 (356)
Q Consensus 214 ~-~-~~~~~ivf~~~~~~~~~~~~~l~~--------------------------------------~~~~~~~~~~~~~~ 253 (356)
. . .+..+||||+++..++.++..+.. ....+..+|.+++.
T Consensus 455 et~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~ 534 (1008)
T KOG0950|consen 455 ETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTS 534 (1008)
T ss_pred hhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceeccccccc
Confidence 1 1 334599999999999988755443 12356778999999
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEec----CCCChhhhhhccccccCCCCc--ceEEEEEccCCCh
Q 018420 254 EERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD----MPDSADTYLHRVGRAGRFGTK--GLAITFVSSASDS 327 (356)
Q Consensus 254 ~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~----~~~s~~~~~Q~~GR~~R~~~~--~~~~~~~~~~~~~ 327 (356)
++|..+...|+.|-+.|+++|+.+..|+|+|...+++-.. ...+-.+|.|++||+||+|.+ |.++++....+..
T Consensus 535 eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~ 614 (1008)
T KOG0950|consen 535 EEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKK 614 (1008)
T ss_pred chHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchh
Confidence 9999999999999999999999999999999877776443 234778999999999998764 6777777754443
Q ss_pred HHHHHHHHHhcccCcccCcccc
Q 018420 328 DILNQVQARFEVDIKELPEQID 349 (356)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~ 349 (356)
.. ++.+...++.+.+.+.
T Consensus 615 ~~----~~lv~~~~~~~~S~l~ 632 (1008)
T KOG0950|consen 615 RV----RELVNSPLKPLNSCLS 632 (1008)
T ss_pred HH----HHHHhccccccccccc
Confidence 33 3555555565555553
No 111
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=4.3e-23 Score=191.45 Aligned_cols=314 Identities=18% Similarity=0.201 Sum_probs=221.3
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
+++.+.++.+++.++|.+.||+|||+...-.+++....+....++++--|+|--+-.+++++..-.....+-.|++-...
T Consensus 178 r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl 257 (924)
T KOG0920|consen 178 RDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRL 257 (924)
T ss_pred HHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEee
Confidence 45667788888999999999999998776667765443335557888889988888888877655444445555554432
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
.+. ......+++||...+++.+.. ...+.++..+|+||+|.-.-..++...+.+..-...+..++|+||||.
T Consensus 258 ~~~-------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~ 329 (924)
T KOG0920|consen 258 ESK-------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATL 329 (924)
T ss_pred ecc-------cCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeec
Confidence 221 222258999999999998876 456788999999999998877788777777777777899999999998
Q ss_pred ccchHHHHHhhcCCCeEEEeccccc---------------cccccceEE------------EEEcChhHHHHHHHHHH--
Q 018420 162 SKEIRPVCKKFMQDPMEIYVDDEAK---------------LTLHGLVQH------------YIKLSELEKNRKLNDLL-- 212 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~------------~~~~~~~~~~~~~~~~~-- 212 (356)
..+ ....+++....+.+....- ......... ..........+.+..++
T Consensus 330 dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~ 406 (924)
T KOG0920|consen 330 DAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEY 406 (924)
T ss_pred chH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHh
Confidence 733 3344443332222111100 000000000 00000112223333333
Q ss_pred --hccCCCeEEEEecchhhHHHHHHHHHhC-------CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCC
Q 018420 213 --DALDFNQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDI 283 (356)
Q Consensus 213 --~~~~~~~~ivf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~ 283 (356)
+....+.+|||.|..+....+.+.|... ..-+..+|+.++..+++.++.....|..+|+++|++++..+.+
T Consensus 407 I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITI 486 (924)
T KOG0920|consen 407 IDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITI 486 (924)
T ss_pred cccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccc
Confidence 3445689999999999999999999753 1345568999999999999998889999999999999999999
Q ss_pred CCCCEEEEecCC------------------CChhhhhhccccccCCCCcceEEEEEccCCCh
Q 018420 284 ERVNIVINYDMP------------------DSADTYLHRVGRAGRFGTKGLAITFVSSASDS 327 (356)
Q Consensus 284 ~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 327 (356)
+++-.||..+.. -|.....||.||+||. ++|.|+.++.....+
T Consensus 487 dDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 487 DDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred cCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 999999976632 2666778999999996 699999998864433
No 112
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=5.8e-23 Score=186.92 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=112.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
||.+.+..+-++++++|+|||.+|||++...++-..++....+ .++++.|+++|+.|...++........-.+...+.|
T Consensus 515 WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~-VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g 593 (1330)
T KOG0949|consen 515 WQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSD-VVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLG 593 (1330)
T ss_pred HHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCC-EEEEecchHHHhhhhhHHHHHhhccCccccchhhHh
Confidence 5777777777899999999999999998777777777666555 799999999999999998886553221234445555
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhc---CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARD---KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~---~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
..+.+..... -.++|+||-|+.+-+.+.. .......++++|+||+|.+.. ..-...+..+.... .|+++++
T Consensus 594 ~ltqEYsinp---~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~-~ed~l~~Eqll~li--~CP~L~L 667 (1330)
T KOG0949|consen 594 DLTQEYSINP---WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN-EEDGLLWEQLLLLI--PCPFLVL 667 (1330)
T ss_pred hhhHHhcCCc---hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccc-cccchHHHHHHHhc--CCCeeEE
Confidence 4333322221 1248999999999887665 445578899999999998866 33333444444433 4779999
Q ss_pred EecCccc
Q 018420 158 SATLSKE 164 (356)
Q Consensus 158 SaT~~~~ 164 (356)
|||..+.
T Consensus 668 SATigN~ 674 (1330)
T KOG0949|consen 668 SATIGNP 674 (1330)
T ss_pred ecccCCH
Confidence 9997643
No 113
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.91 E-value=1.5e-21 Score=188.32 Aligned_cols=122 Identities=16% Similarity=0.166 Sum_probs=88.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCC--CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCC--EEEE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECN--FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVN--IVIN 291 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~--~vi~ 291 (356)
..++++||+++.+.++.++..|.... .....+..+.. ..|.++++.|+.++..||++|+..++|+|+|+.. .||+
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 44789999999999999999998621 12223333333 4778899999999999999999999999999855 7777
Q ss_pred ecCCCC------------------------------hhhhhhccccccCCCCcceEEEEEccC-CChHHHHHHHHHhc
Q 018420 292 YDMPDS------------------------------ADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFE 338 (356)
Q Consensus 292 ~~~~~s------------------------------~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 338 (356)
.+.|.. ...+.|.+||+.|..++..++++.+.. ....+-+.+.+.+.
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 776631 133469999999998887788888754 23334444444443
No 114
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.9e-22 Score=176.88 Aligned_cols=304 Identities=16% Similarity=0.151 Sum_probs=206.3
Q ss_pred ccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcc
Q 018420 4 ECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN 83 (356)
Q Consensus 4 ~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~ 83 (356)
+.+.++..++-++|.|.||||||+..--.+.+.... .++.++-.--|+|--+-.++.++..-.+-.-|-.|++-.--++
T Consensus 272 ell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEd 350 (902)
T KOG0923|consen 272 ELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFED 350 (902)
T ss_pred HHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-cCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEecc
Confidence 456677778889999999999998754444443333 2332578888999888888887765432211334444332111
Q ss_pred hHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCcc
Q 018420 84 IKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 163 (356)
Q Consensus 84 ~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 163 (356)
... ..+.+-++|-.+|+..+..+ ..+.+++++||||||.-.-..+....+-.-...+.++.+++.+|||+..
T Consensus 351 cTS-------ekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DA 422 (902)
T KOG0923|consen 351 CTS-------EKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDA 422 (902)
T ss_pred ccC-------cceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCH
Confidence 111 12478899999998866433 3568899999999997654344444444444556678899999999874
Q ss_pred chHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhc----cCCCeEEEEecchhhHHHHHHHHHh
Q 018420 164 EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
. .+..++.+...+.+. .... .....|...++..-.+.....+.+ .+.+-+|||....+..+...+.|.+
T Consensus 423 e---kFS~fFDdapIF~iP-GRRy---PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~ 495 (902)
T KOG0923|consen 423 E---KFSAFFDDAPIFRIP-GRRY---PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKE 495 (902)
T ss_pred H---HHHHhccCCcEEecc-Cccc---ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHH
Confidence 3 334444443222221 1111 122334444444433333333322 2568899999999888888777765
Q ss_pred C----C-----CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecC----------------
Q 018420 240 C----N-----FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM---------------- 294 (356)
Q Consensus 240 ~----~-----~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~---------------- 294 (356)
. | +.+..+++.++.+.+..+++.-..|-.+|++||+++++.+.++++..||.-+.
T Consensus 496 ~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~ 575 (902)
T KOG0923|consen 496 RCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLL 575 (902)
T ss_pred HHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEE
Confidence 3 2 34556899999999999988888888999999999999999999999996542
Q ss_pred --CCChhhhhhccccccCCCCcceEEEEEccC
Q 018420 295 --PDSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 295 --~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
|-|-.+..||.||+||.| +|.|+-++..-
T Consensus 576 v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 576 VTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred EeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 347778899999999987 99999998853
No 115
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.4e-22 Score=178.21 Aligned_cols=300 Identities=16% Similarity=0.166 Sum_probs=203.8
Q ss_pred cccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCc
Q 018420 3 HECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV 82 (356)
Q Consensus 3 ~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~ 82 (356)
.+.+..+..++-++|.+.||||||+...-.+.+......+ -+-+--|+|.-+-.++.++..-.+..-|-.|++..--+
T Consensus 362 ~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFE 439 (1042)
T KOG0924|consen 362 DQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFE 439 (1042)
T ss_pred HHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccceEEEee
Confidence 4556667778889999999999998765555554443332 45666799998888888877544332255555544322
Q ss_pred chHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 83 NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
.... ..+.|-+.|-..|+....... .+.++++||+||||.-+-..+....+.+..-....+.++|.+|||+.
T Consensus 440 dvT~-------~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 440 DVTS-------EDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD 511 (1042)
T ss_pred ecCC-------CceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc
Confidence 2221 225788999999887443332 35789999999999876555544444444444446788999999987
Q ss_pred cchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHh-------ccCCCeEEEEecchhhHHHHHH
Q 018420 163 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD-------ALDFNQVVIFVKSVSRAAELNK 235 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivf~~~~~~~~~~~~ 235 (356)
.. .+.+++++...+.+....- . ...+.... ...+.+...++ ....+.++||....+..+-.+.
T Consensus 512 a~---kf~nfFgn~p~f~IpGRTy-P----V~~~~~k~--p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~ 581 (1042)
T KOG0924|consen 512 AQ---KFSNFFGNCPQFTIPGRTY-P----VEIMYTKT--PVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCD 581 (1042)
T ss_pred HH---HHHHHhCCCceeeecCCcc-c----eEEEeccC--chHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHH
Confidence 43 4455555333333322211 0 11111111 11223333322 2245789999998887776665
Q ss_pred HHHhC----------CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEec------------
Q 018420 236 LLVEC----------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD------------ 293 (356)
Q Consensus 236 ~l~~~----------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~------------ 293 (356)
.++.. +..+..+++.++..-+.+++..-..|..+++|||+++++.+.+|+...||..+
T Consensus 582 ~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G 661 (1042)
T KOG0924|consen 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIG 661 (1042)
T ss_pred HHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccc
Confidence 55542 46677899999999999998888888899999999999999999999999766
Q ss_pred ------CCCChhhhhhccccccCCCCcceEEEEEcc
Q 018420 294 ------MPDSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 294 ------~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
.|-|.+..-||.||+||.| +|.|+-++..
T Consensus 662 ~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 662 MDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred cceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 2457888899999999986 9999988875
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.90 E-value=1.9e-20 Score=173.48 Aligned_cols=108 Identities=23% Similarity=0.383 Sum_probs=101.4
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEec--
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD-- 293 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~-- 293 (356)
.+.+++|||++.+.++.+++.|.+.|+++..+|+++++.+|.++++.|+.|+++|||||+.+++|+|+|.+++|++++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ---CCCChhhhhhccccccCCCCcceEEEEEccC
Q 018420 294 ---MPDSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 294 ---~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
.|.+..+|+|++||+||. ..|.++.+.+..
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 688999999999999997 688888888843
No 117
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.1e-21 Score=173.61 Aligned_cols=307 Identities=19% Similarity=0.199 Sum_probs=202.2
Q ss_pred ccccHhhHhc----CCcEEEEccCCCccchHh--HHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 2 QHECIPQAIL----GMDVICQAKSGMGKTAVF--VLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 2 Q~~~~~~~~~----~~~~li~~~tGsGKT~~~--~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
|++.+..+.+ ++-.|+-..+|-|||... .++++....... .+++||||. .+..||..++..+. |.+++
T Consensus 210 QreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~--~paLIVCP~-Tii~qW~~E~~~w~---p~~rv 283 (923)
T KOG0387|consen 210 QREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLT--KPALIVCPA-TIIHQWMKEFQTWW---PPFRV 283 (923)
T ss_pred HHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccccc--CceEEEccH-HHHHHHHHHHHHhC---cceEE
Confidence 5666666554 566899999999999443 233333332112 279999995 79999988887765 67799
Q ss_pred EEEEcCcch---------HHhHHHHh---cCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHH
Q 018420 76 AVFYGGVNI---------KIHKDLLK---NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQE 143 (356)
Q Consensus 76 ~~~~~~~~~---------~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~ 143 (356)
..+|+.... ..+...+. ..+..|+++|++.|.-.- ..+.-..++++|+||.|.+-++ ...+..
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~--d~l~~~~W~y~ILDEGH~IrNp---ns~isl 358 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG--DDLLGILWDYVILDEGHRIRNP---NSKISL 358 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC--cccccccccEEEecCcccccCC---ccHHHH
Confidence 999986552 11112111 234579999999885321 2233346789999999999553 334444
Q ss_pred HHhhCCCCCcEEEEEecCccc-hHH-------------------------------------------------------
Q 018420 144 IFKMTPHDKQVMMFSATLSKE-IRP------------------------------------------------------- 167 (356)
Q Consensus 144 ~~~~~~~~~~~i~~SaT~~~~-~~~------------------------------------------------------- 167 (356)
....++ ..+.|.+|+||-.+ +.+
T Consensus 359 ackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~ 437 (923)
T KOG0387|consen 359 ACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLIS 437 (923)
T ss_pred HHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhH
Confidence 444443 45678889997332 000
Q ss_pred -HHHh---------hc-CCCeEEEe------------------------ccc-----------------cccc----ccc
Q 018420 168 -VCKK---------FM-QDPMEIYV------------------------DDE-----------------AKLT----LHG 191 (356)
Q Consensus 168 -~~~~---------~~-~~~~~~~~------------------------~~~-----------------~~~~----~~~ 191 (356)
++.. .+ .+...+.+ ... .... ...
T Consensus 438 PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~~ 517 (923)
T KOG0387|consen 438 PYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDEK 517 (923)
T ss_pred HHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCcccccc
Confidence 0000 00 00000000 000 0000 000
Q ss_pred ceEEE-EEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHH-hCCCCeEEEecCCCHHHHHHHHHHhhcCC
Q 018420 192 LVQHY-IKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLV-ECNFPSICIHSGMSQEERLTRYKGFKEGN 267 (356)
Q Consensus 192 ~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 267 (356)
....+ -......+...+..++... .+.++++|..++.....+...|. ..++....+.|..+...|..+++.|+.++
T Consensus 518 ~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~ 597 (923)
T KOG0387|consen 518 QGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDE 597 (923)
T ss_pred cCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCC
Confidence 00001 1111122445555555543 56799999999999999999999 57999999999999999999999999875
Q ss_pred C-c-EEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 268 K-R-ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 268 ~-~-vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
. . .|++|.+.+.|+|+-+++-||+|||.|++..-.|..-|+.|.|+...|+++
T Consensus 598 s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 598 SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 4 3 578889999999999999999999999999999999999999998776544
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=1.8e-21 Score=176.02 Aligned_cols=298 Identities=19% Similarity=0.195 Sum_probs=201.0
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcC
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 94 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 94 (356)
-+..+.||+|||+++.+++......+. .|.+++|+..|+.|.++++..+...+ |+.++.+.++.+........ .
T Consensus 94 ~VaEM~TGEGKTLvA~l~a~l~AL~G~---~VhvvT~NdyLA~RDae~m~~ly~~L-GLsvg~i~~~~~~~err~aY-~- 167 (764)
T PRK12326 94 DVIEMATGEGKTLAGAIAAAGYALQGR---RVHVITVNDYLARRDAEWMGPLYEAL-GLTVGWITEESTPEERRAAY-A- 167 (764)
T ss_pred CcccccCCCCHHHHHHHHHHHHHHcCC---CeEEEcCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCCCHHHHHHHH-c-
Confidence 477999999999998888877665554 68999999999999999999988887 99999998876655444333 2
Q ss_pred CCcEEEechHHH-HHHHhcCC------cccCCccEEEEecccccccc--------------ccchhHHHHHHhhC-----
Q 018420 95 CPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES--------------LDMRRDVQEIFKMT----- 148 (356)
Q Consensus 95 ~~~i~v~T~~~l-~~~~~~~~------~~~~~~~~viiDE~H~~~~~--------------~~~~~~~~~~~~~~----- 148 (356)
++|+++|...| +.+++... ...+.+.+.||||++.+.-+ ......+..+...+
T Consensus 168 -~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~d 246 (764)
T PRK12326 168 -CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKD 246 (764)
T ss_pred -CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCc
Confidence 48999998876 33443322 12466889999999988600 00000000000000
Q ss_pred ----------------------------------------------------CCC-------------------------
Q 018420 149 ----------------------------------------------------PHD------------------------- 151 (356)
Q Consensus 149 ----------------------------------------------------~~~------------------------- 151 (356)
..+
T Consensus 247 y~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grr 326 (764)
T PRK12326 247 YEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQR 326 (764)
T ss_pred EEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCc
Confidence 000
Q ss_pred ------------------------------------CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEE
Q 018420 152 ------------------------------------KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQH 195 (356)
Q Consensus 152 ------------------------------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (356)
.++-+||+|......++.+.+ +-+.. .+....+. .+.....
T Consensus 327 wsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY-~l~Vv-~IPtnkp~-~R~d~~d 403 (764)
T PRK12326 327 WPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY-DLGVS-VIPPNKPN-IREDEAD 403 (764)
T ss_pred cChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh-CCcEE-ECCCCCCc-eeecCCC
Confidence 046778888765544443333 33322 22222222 2222233
Q ss_pred EEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCC-CcEEE
Q 018420 196 YIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN-KRILV 272 (356)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~vlv 272 (356)
.+......+...+..-+... .+.|+||.+.+++..+.+.+.|.+.+++...+++.....+ .+++. +.|+ -.|.|
T Consensus 404 ~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTI 480 (764)
T PRK12326 404 RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTV 480 (764)
T ss_pred ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHH--hcCCCCcEEE
Confidence 33444445555554444332 7789999999999999999999999999999998744333 33332 3443 35999
Q ss_pred EcCccccCCCCCCC---------------CEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCC
Q 018420 273 ATDLVGRGIDIERV---------------NIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 325 (356)
Q Consensus 273 ~t~~~~~G~d~~~~---------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 325 (356)
||+++++|.|+.-- -+||....+.|..--.|..||+||+|.+|.+..+++-++
T Consensus 481 ATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 481 STQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred EecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 99999999999632 278888889999999999999999999999999988543
No 119
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=8.8e-22 Score=182.95 Aligned_cols=128 Identities=22% Similarity=0.290 Sum_probs=110.9
Q ss_pred EEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEE
Q 018420 195 HYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 272 (356)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv 272 (356)
..+......+...+...+... .+.|+||||++++.++.+.+.|...+++...+|+ .+.+|...+..|+.+...|+|
T Consensus 574 d~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtI 651 (1025)
T PRK12900 574 DLVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTI 651 (1025)
T ss_pred CeEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEE
Confidence 344555666777777777544 6789999999999999999999999999999997 577888889999999999999
Q ss_pred EcCccccCCCCCC---CC-----EEEEecCCCChhhhhhccccccCCCCcceEEEEEccC
Q 018420 273 ATDLVGRGIDIER---VN-----IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 273 ~t~~~~~G~d~~~---~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
||+++++|+|++- +. +||....|.|...+.|++||+||.|.+|.+..+++..
T Consensus 652 ATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSle 711 (1025)
T PRK12900 652 ATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLE 711 (1025)
T ss_pred eccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechh
Confidence 9999999999993 33 4477888999999999999999999999999999864
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=6.3e-21 Score=176.59 Aligned_cols=299 Identities=17% Similarity=0.176 Sum_probs=200.5
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 93 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 93 (356)
--+..+.||+|||+++.++++.....+. .|.+++|+..|+.+.++++..+...+ |+.++++.++.+.......+.
T Consensus 97 G~iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT~ndyLA~RD~e~m~~l~~~l-Gl~v~~i~~~~~~~err~~Y~- 171 (913)
T PRK13103 97 GKIAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVTVNDYLARRDANWMRPLYEFL-GLSVGIVTPFQPPEEKRAAYA- 171 (913)
T ss_pred CccccccCCCCChHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHhccc-CCEEEEECCCCCHHHHHHHhc-
Confidence 3588999999999998888876666555 68999999999999999999998887 999999988776555444443
Q ss_pred CCCcEEEechHHH-HHHHhcCCc------ccCCccEEEEecccccccc---------------ccchhHHHHHHhhC---
Q 018420 94 ECPQIVVGTPGRI-LALARDKDL------SLKNVRHFILDECDKMLES---------------LDMRRDVQEIFKMT--- 148 (356)
Q Consensus 94 ~~~~i~v~T~~~l-~~~~~~~~~------~~~~~~~viiDE~H~~~~~---------------~~~~~~~~~~~~~~--- 148 (356)
.+|+++|...| +.+++.... ..+.+.++||||+|.+.=+ ......+..+...+
T Consensus 172 --~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~ 249 (913)
T PRK13103 172 --ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQH 249 (913)
T ss_pred --CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhh
Confidence 59999999887 333433211 2377899999999998610 00000000000000
Q ss_pred -----------------------------------------------------------------------CCCC-----
Q 018420 149 -----------------------------------------------------------------------PHDK----- 152 (356)
Q Consensus 149 -----------------------------------------------------------------------~~~~----- 152 (356)
..+.
T Consensus 250 ~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~ 329 (913)
T PRK13103 250 IEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQ 329 (913)
T ss_pred hhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 0000
Q ss_pred --------------------------------------------------------cEEEEEecCccchHHHHHhhcCCC
Q 018420 153 --------------------------------------------------------QVMMFSATLSKEIRPVCKKFMQDP 176 (356)
Q Consensus 153 --------------------------------------------------------~~i~~SaT~~~~~~~~~~~~~~~~ 176 (356)
++-+||+|......++...+ +-+
T Consensus 330 dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY-~l~ 408 (913)
T PRK13103 330 DGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIY-GLD 408 (913)
T ss_pred CCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHh-CCC
Confidence 24445555543333322222 222
Q ss_pred eEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHH
Q 018420 177 MEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQE 254 (356)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 254 (356)
.. ..+......+......+.....++...+..-+... .+.|+||-+.+++..+.+.+.|...+++.-.++......
T Consensus 409 Vv--~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~ 486 (913)
T PRK13103 409 VV--VIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEK 486 (913)
T ss_pred EE--ECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchh
Confidence 11 11222222222233334455556666665555433 678999999999999999999999999988888764433
Q ss_pred HHHHHHHHhhcCC-CcEEEEcCccccCCCCCC-------------------------------------CCEEEEecCCC
Q 018420 255 ERLTRYKGFKEGN-KRILVATDLVGRGIDIER-------------------------------------VNIVINYDMPD 296 (356)
Q Consensus 255 ~~~~~~~~f~~~~-~~vlv~t~~~~~G~d~~~-------------------------------------~~~vi~~~~~~ 296 (356)
+ .+++. +.|. -.|.|||+++++|.|+.- --+||-...+.
T Consensus 487 E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerhe 563 (913)
T PRK13103 487 E-AEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHE 563 (913)
T ss_pred H-HHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCc
Confidence 3 23332 4453 359999999999999941 12677788889
Q ss_pred ChhhhhhccccccCCCCcceEEEEEccCC
Q 018420 297 SADTYLHRVGRAGRFGTKGLAITFVSSAS 325 (356)
Q Consensus 297 s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 325 (356)
|.+--.|..||+||+|.+|.+-.+++-++
T Consensus 564 SrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 564 SRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred hHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 99999999999999999999999988643
No 121
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=5.9e-22 Score=168.73 Aligned_cols=307 Identities=19% Similarity=0.171 Sum_probs=196.2
Q ss_pred ccccHhhHhc---CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 2 QHECIPQAIL---GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 2 Q~~~~~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
|.++++.++. .++.+|+.|.|+|||++.+.++..-.. +++++|.+...++||..++..+...- .-.++.+
T Consensus 307 QEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK------~clvLcts~VSVeQWkqQfk~wsti~-d~~i~rF 379 (776)
T KOG1123|consen 307 QEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKK------SCLVLCTSAVSVEQWKQQFKQWSTIQ-DDQICRF 379 (776)
T ss_pred HHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecc------cEEEEecCccCHHHHHHHHHhhcccC-ccceEEe
Confidence 7788888875 367899999999999876544443322 78999999999999999999887664 4466666
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC--------CcccCCccEEEEeccccccccccchhHHHHHHhhCCC
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--------DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 150 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~ 150 (356)
+++.. ......+.|+|+|+.++..--.+. .+.-+.++++++||+|.+.. .-|++.+.-...++
T Consensus 380 Tsd~K------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA-~MFRRVlsiv~aHc-- 450 (776)
T KOG1123|consen 380 TSDAK------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA-KMFRRVLSIVQAHC-- 450 (776)
T ss_pred ecccc------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH-HHHHHHHHHHHHHh--
Confidence 65322 122233689999998874322111 11245678899999998865 44555544444443
Q ss_pred CCcEEEEEecCccchHHHH-HhhcCCCeEEEeccc-----------------------------cccccccceEEEEEcC
Q 018420 151 DKQVMMFSATLSKEIRPVC-KKFMQDPMEIYVDDE-----------------------------AKLTLHGLVQHYIKLS 200 (356)
Q Consensus 151 ~~~~i~~SaT~~~~~~~~~-~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 200 (356)
.+++|||+-....... .+++-.|........ .....+.+.- ...
T Consensus 451 ---KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lL---yvM 524 (776)
T KOG1123|consen 451 ---KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLL---YVM 524 (776)
T ss_pred ---hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhee---eec
Confidence 5799999854322111 112222211110000 0001111111 112
Q ss_pred hhHHHHHHHHHHhc--cCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcC-CCcEEEEcCcc
Q 018420 201 ELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NKRILVATDLV 277 (356)
Q Consensus 201 ~~~~~~~~~~~~~~--~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~vlv~t~~~ 277 (356)
+..++....-+++. .++.++|||..++-.....+-.|. .-+++|..++.+|.++++.|+.+ .++.++.+.+.
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 22333333333332 277899999988777666655543 23578999999999999999865 67889999999
Q ss_pred ccCCCCCCCCEEEEecCC-CChhhhhhccccccCCCCc----ce--EEEEEccCCChHHHHHHHH
Q 018420 278 GRGIDIERVNIVINYDMP-DSADTYLHRVGRAGRFGTK----GL--AITFVSSASDSDILNQVQA 335 (356)
Q Consensus 278 ~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~~----~~--~~~~~~~~~~~~~~~~~~~ 335 (356)
...+|+|.++++|..... .|..+-.||+||+.|..+. -. .+.+++.+..+.+...-+.
T Consensus 600 DtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ 664 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQ 664 (776)
T ss_pred CccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhh
Confidence 999999999999988654 5888999999999995331 12 2455665555444433333
No 122
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.88 E-value=7.7e-20 Score=174.18 Aligned_cols=121 Identities=15% Similarity=0.164 Sum_probs=87.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCC--CCEEEEec
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER--VNIVINYD 293 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~--~~~vi~~~ 293 (356)
.+++++|++++.+.++.+++.|....... ...|... .+.++++.|+.++-.||++|+...||+|+|. ...||+.+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 45899999999999999999997654433 3334222 2456788999988899999999999999974 55667777
Q ss_pred CCC------------------------------ChhhhhhccccccCCCCcceEEEEEccC-CChHHHHHHHHHhcc
Q 018420 294 MPD------------------------------SADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFEV 339 (356)
Q Consensus 294 ~~~------------------------------s~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 339 (356)
.|. -...+.|.+||..|...+..++++.+.. ....+-+.+.+.+..
T Consensus 723 LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 723 LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLAE 799 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCCC
Confidence 653 1234569999999988777788888864 334444555555443
No 123
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.2e-20 Score=160.62 Aligned_cols=119 Identities=22% Similarity=0.375 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcc-CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCC
Q 018420 204 KNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGID 282 (356)
Q Consensus 204 ~~~~~~~~~~~~-~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d 282 (356)
..+.+.++.... .+.+++|-+-+++.|+.+.++|.+.|+++..+|++....+|.+++++++.|+++|||+-+.+-+|+|
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLD 511 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCC
Confidence 334444444432 5589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecCC-----CChhhhhhccccccCCCCcceEEEEEcc
Q 018420 283 IERVNIVINYDMP-----DSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 283 ~~~~~~vi~~~~~-----~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
+|-++.|.++|.. .|..+++|.+||+.|. -.|.++.+.+.
T Consensus 512 iPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 512 LPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred CcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 9999999999864 5999999999999995 47788877764
No 124
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.88 E-value=2.6e-19 Score=163.32 Aligned_cols=124 Identities=17% Similarity=0.156 Sum_probs=88.7
Q ss_pred HHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhc----CCCcEEEEcCccccCCCC-
Q 018420 209 NDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE----GNKRILVATDLVGRGIDI- 283 (356)
Q Consensus 209 ~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~----~~~~vlv~t~~~~~G~d~- 283 (356)
..++.. .+++++|.+.+...++.+++.|...-...+.+.|..+ .+..+++.|+. ++-.||++|+.+.+|+|+
T Consensus 463 ~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~ 539 (636)
T TIGR03117 463 AAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLT 539 (636)
T ss_pred HHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccC
Confidence 333333 4478999999999999999999765334444555432 33456667766 478899999999999999
Q ss_pred -------CC--CCEEEEecCCC-------------------------ChhhhhhccccccCCCCc--ceEEEEEccCCCh
Q 018420 284 -------ER--VNIVINYDMPD-------------------------SADTYLHRVGRAGRFGTK--GLAITFVSSASDS 327 (356)
Q Consensus 284 -------~~--~~~vi~~~~~~-------------------------s~~~~~Q~~GR~~R~~~~--~~~~~~~~~~~~~ 327 (356)
|+ ++.||+...|. ....+.|-+||..|...+ ..++++.++.-..
T Consensus 540 ~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~ 619 (636)
T TIGR03117 540 HKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHW 619 (636)
T ss_pred CccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCc
Confidence 33 88999888763 123457999999998877 7788888876555
Q ss_pred HHHHHHHH
Q 018420 328 DILNQVQA 335 (356)
Q Consensus 328 ~~~~~~~~ 335 (356)
.+-+.+..
T Consensus 620 ~yg~~~~~ 627 (636)
T TIGR03117 620 PYMESWQE 627 (636)
T ss_pred hhHHHHHH
Confidence 55554444
No 125
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=5.8e-21 Score=170.86 Aligned_cols=308 Identities=19% Similarity=0.154 Sum_probs=195.6
Q ss_pred cccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcC---CCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 3 HECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTE---PNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 3 ~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~---~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
++..++|..+--+||||.||||||+..---+.+..- ..+.+.-+=|--|+|.-+-.++++...-.+.+ +-.|++..
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYqI 340 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQI 340 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEEE
Confidence 356678888888999999999999764333333221 12223356777799988888888776544444 44555433
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch-hHHHHHH---hhCC------
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-RDVQEIF---KMTP------ 149 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~-~~~~~~~---~~~~------ 149 (356)
--.. -....+.|.++|-+-|+..+.+.. .+..+++||+||||.-+-..+.. ..+.++. ....
T Consensus 341 Rfd~-------ti~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~ 412 (1172)
T KOG0926|consen 341 RFDG-------TIGEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQI 412 (1172)
T ss_pred Eecc-------ccCCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 2111 112235899999999998776544 46889999999999875433322 1222222 1111
Q ss_pred CCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcCh-h---HHHHHHHHHHhccCCCeEEEEec
Q 018420 150 HDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-L---EKNRKLNDLLDALDFNQVVIFVK 225 (356)
Q Consensus 150 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~ivf~~ 225 (356)
.+.+.|.||||+.-.-..--+.++..|..+......+.... .++..-.. . +.+.....+-+..+.+.++||+.
T Consensus 413 kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVs---IHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 413 KPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVS---IHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVT 489 (1172)
T ss_pred CceeEEEEeeeEEecccccCceecCCCCceeeeecccCceE---EEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEe
Confidence 25679999999864322212333333322222222221111 11111111 1 12233334445668899999999
Q ss_pred chhhHHHHHHHHHhCC----------------------------------------------------------------
Q 018420 226 SVSRAAELNKLLVECN---------------------------------------------------------------- 241 (356)
Q Consensus 226 ~~~~~~~~~~~l~~~~---------------------------------------------------------------- 241 (356)
....+.++.+.|++..
T Consensus 490 GQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~ 569 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFN 569 (1172)
T ss_pred ChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhh
Confidence 9999999999988720
Q ss_pred -----------------------------------CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCC
Q 018420 242 -----------------------------------FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 286 (356)
Q Consensus 242 -----------------------------------~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~ 286 (356)
..+..+++-++...+.++++.-..|..-++|+|+++++.+.+|++
T Consensus 570 ~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgI 649 (1172)
T KOG0926|consen 570 ALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGI 649 (1172)
T ss_pred ccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCe
Confidence 012223444557777777777778888889999999999999999
Q ss_pred CEEEEecCC------------------CChhhhhhccccccCCCCcceEEEEEcc
Q 018420 287 NIVINYDMP------------------DSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 287 ~~vi~~~~~------------------~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
..||..+.. -|.++--||.||+||.| +|.||-+|+.
T Consensus 650 kYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 650 KYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred eEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 999977632 15566679999999987 8999988775
No 126
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.87 E-value=1.4e-19 Score=165.57 Aligned_cols=297 Identities=15% Similarity=0.149 Sum_probs=189.5
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCC-----CeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhH
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPG-----QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 88 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~-----~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 88 (356)
..|+...+|+|||+..+..+...+...++ . +.+||+|. +|+..|+++|.++.... .+....+.+.... .+.
T Consensus 265 GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~-k~lVV~P~-sLv~nWkkEF~KWl~~~-~i~~l~~~~~~~~-~w~ 340 (776)
T KOG0390|consen 265 GCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLIN-KPLVVAPS-SLVNNWKKEFGKWLGNH-RINPLDFYSTKKS-SWI 340 (776)
T ss_pred ceEeeCCCCcchHHHHHHHHHHHHHhCcCcccccc-ccEEEccH-HHHHHHHHHHHHhcccc-ccceeeeecccch-hhh
Confidence 36888999999998877666666666655 4 78999995 79999999999998742 4566666665543 111
Q ss_pred HH-------HhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 89 DL-------LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 89 ~~-------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
+. ......-|++.+++.+....+. +....++++|+||.|+.-+ ....+...+..+ ...+.|++|+||
T Consensus 341 ~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN---~~s~~~kaL~~l-~t~rRVLLSGTp 414 (776)
T KOG0390|consen 341 KLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKN---SDSLTLKALSSL-KTPRRVLLTGTP 414 (776)
T ss_pred hhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccc---hhhHHHHHHHhc-CCCceEEeeCCc
Confidence 10 1112246788899998765553 3346789999999998743 334444444444 356689999997
Q ss_pred ccc-hHHHH---------------------------------------------------HhhcCC----------Ce--
Q 018420 162 SKE-IRPVC---------------------------------------------------KKFMQD----------PM-- 177 (356)
Q Consensus 162 ~~~-~~~~~---------------------------------------------------~~~~~~----------~~-- 177 (356)
-.+ +.++. ..+... |.
T Consensus 415 ~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~ 494 (776)
T KOG0390|consen 415 IQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKY 494 (776)
T ss_pred ccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCce
Confidence 322 11000 000000 00
Q ss_pred -EEE-eccc--------------------------------------------------------cccccccceEEEEEc
Q 018420 178 -EIY-VDDE--------------------------------------------------------AKLTLHGLVQHYIKL 199 (356)
Q Consensus 178 -~~~-~~~~--------------------------------------------------------~~~~~~~~~~~~~~~ 199 (356)
.+. .... ...............
T Consensus 495 e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 574 (776)
T KOG0390|consen 495 EYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDG 574 (776)
T ss_pred eEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccc
Confidence 000 0000 000000000000000
Q ss_pred ChhHHHHHHHHHHhcc---CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCC--c-EEEE
Q 018420 200 SELEKNRKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK--R-ILVA 273 (356)
Q Consensus 200 ~~~~~~~~~~~~~~~~---~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~-vlv~ 273 (356)
....+...+..++... ...++++..|-....+.+...+.-.|..+..++|.++..+|..+++.|+...- . .|.+
T Consensus 575 ~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlS 654 (776)
T KOG0390|consen 575 SKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLS 654 (776)
T ss_pred hhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEe
Confidence 1111222233332222 22345555566666666666666679999999999999999999999987533 3 5667
Q ss_pred cCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 274 TDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 274 t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
+.+.++|+|+=+++.||++|+.|+++.-.|.++|+.|.|+...|+++
T Consensus 655 sKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 655 SKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred cccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 78999999999999999999999999999999999999999998755
No 127
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=1.7e-19 Score=165.60 Aligned_cols=297 Identities=19% Similarity=0.246 Sum_probs=193.2
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcC
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 94 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 94 (356)
-+..+.||.|||+++.+++......++ .|-++...-.|+..-++++..+...+ |+.+++..++...........
T Consensus 94 ~IAEMkTGEGKTLvAtLpayLnAL~Gk---gVhVVTvNdYLA~RDae~mg~vy~fL-GLsvG~i~~~~~~~~rr~aY~-- 167 (925)
T PRK12903 94 SVAEMKTGEGKTITSIAPVYLNALTGK---GVIVSTVNEYLAERDAEEMGKVFNFL-GLSVGINKANMDPNLKREAYA-- 167 (925)
T ss_pred CeeeecCCCCccHHHHHHHHHHHhcCC---ceEEEecchhhhhhhHHHHHHHHHHh-CCceeeeCCCCChHHHHHhcc--
Confidence 478999999999998887765544444 57777888899988888888777776 999998887655554443332
Q ss_pred CCcEEEechHHH-HHHHhcCC------cccCCccEEEEecccccccc---------------ccchhHHHHHHhhCCC--
Q 018420 95 CPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLES---------------LDMRRDVQEIFKMTPH-- 150 (356)
Q Consensus 95 ~~~i~v~T~~~l-~~~~~~~~------~~~~~~~~viiDE~H~~~~~---------------~~~~~~~~~~~~~~~~-- 150 (356)
++|+++|...| +.+++... .-.+.+.+.||||++.+.=+ ......+..+...+..
T Consensus 168 -~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~d 246 (925)
T PRK12903 168 -CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDD 246 (925)
T ss_pred -CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccc
Confidence 58999999877 44554332 12467788999999988600 0000000111110000
Q ss_pred -----C--------------------------------------------------------------------------
Q 018420 151 -----D-------------------------------------------------------------------------- 151 (356)
Q Consensus 151 -----~-------------------------------------------------------------------------- 151 (356)
.
T Consensus 247 y~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrw 326 (925)
T PRK12903 247 YKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSY 326 (925)
T ss_pred eEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCcc
Confidence 0
Q ss_pred -----------------------------------CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEE
Q 018420 152 -----------------------------------KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHY 196 (356)
Q Consensus 152 -----------------------------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (356)
.++-+||+|......++...+ +-... ..+......+......
T Consensus 327 sdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY-~l~Vv--~IPTnkP~~R~D~~d~ 403 (925)
T PRK12903 327 SEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIY-NMRVN--VVPTNKPVIRKDEPDS 403 (925)
T ss_pred chHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHh-CCCEE--ECCCCCCeeeeeCCCc
Confidence 034556666544333333322 22211 1111111112222223
Q ss_pred EEcChhHHHHHHHHHHhc-c-CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCC-CcEEEE
Q 018420 197 IKLSELEKNRKLNDLLDA-L-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN-KRILVA 273 (356)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~-~-~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~vlv~ 273 (356)
+......+...+..-+.. + .+.|+||.|.+++..+.+++.|.+.|++...+++.....+ .+++. ++|. -.|.||
T Consensus 404 iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~E-A~IIa--~AG~~GaVTIA 480 (925)
T PRK12903 404 IFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNARE-AEIIA--KAGQKGAITIA 480 (925)
T ss_pred EEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhH-HHHHH--hCCCCCeEEEe
Confidence 334454555555544433 2 6789999999999999999999999999999998644332 22332 4564 459999
Q ss_pred cCccccCCCCCCCC--------EEEEecCCCChhhhhhccccccCCCCcceEEEEEccC
Q 018420 274 TDLVGRGIDIERVN--------IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 274 t~~~~~G~d~~~~~--------~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
|+++++|.|+.--. +||....+.|.+--.|..||+||.|.+|.+..+++-.
T Consensus 481 TNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 481 TNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred cccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 99999999996432 8888888999998999999999999999998888854
No 128
>COG4889 Predicted helicase [General function prediction only]
Probab=99.85 E-value=3.2e-21 Score=174.05 Aligned_cols=303 Identities=16% Similarity=0.170 Sum_probs=181.3
Q ss_pred ccccHhhHhc----CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEE
Q 018420 2 QHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 77 (356)
Q Consensus 2 Q~~~~~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~ 77 (356)
|++|+.+..+ +.+.=+.+.+|+|||++.+ .+.+.+.. .++++++|+.+|..|+.+++..-.. + .++...
T Consensus 166 Qq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~----~~iL~LvPSIsLLsQTlrew~~~~~-l-~~~a~a 238 (1518)
T COG4889 166 QQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA----ARILFLVPSISLLSQTLREWTAQKE-L-DFRASA 238 (1518)
T ss_pred HHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh----hheEeecchHHHHHHHHHHHhhccC-c-cceeEE
Confidence 7778887766 3445667788999998854 44444443 2899999999999998776643221 1 445555
Q ss_pred EEcCcchH------------------------HhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 78 FYGGVNIK------------------------IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 78 ~~~~~~~~------------------------~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
++++.... ......+...-.|+++|++++.........-+..+++||+||||+..+
T Consensus 239 VcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 239 VCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred EecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhcccc
Confidence 55543321 111222223346899999999887776666778999999999999875
Q ss_pred cccchhH----HHHHHhh-CCCCCcEEEEEecCccchH---HHH------------------------------HhhcCC
Q 018420 134 SLDMRRD----VQEIFKM-TPHDKQVMMFSATLSKEIR---PVC------------------------------KKFMQD 175 (356)
Q Consensus 134 ~~~~~~~----~~~~~~~-~~~~~~~i~~SaT~~~~~~---~~~------------------------------~~~~~~ 175 (356)
- ..... +.+.... .-...+.+.|||||.-..+ ..+ +.++.+
T Consensus 319 a-~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTD 397 (1518)
T COG4889 319 A-TLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTD 397 (1518)
T ss_pred c-eecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhcc
Confidence 3 22211 1111111 1123467889999842211 111 111222
Q ss_pred CeEEEeccccccccccceEEEEEcChhHHHHHHHHHH-------hcc--------------CCCeEEEEecchhhHHHHH
Q 018420 176 PMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLL-------DAL--------------DFNQVVIFVKSVSRAAELN 234 (356)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--------------~~~~~ivf~~~~~~~~~~~ 234 (356)
...+.....+......+........+.-..+....++ ++. +..++|-||.+++....++
T Consensus 398 YKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~ 477 (1518)
T COG4889 398 YKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIA 477 (1518)
T ss_pred ceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHH
Confidence 2222111111111110000000001011111111111 110 1136789999988888887
Q ss_pred HHHHh-------------CCCCeEE--EecCCCHHHHHHHHH---HhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC
Q 018420 235 KLLVE-------------CNFPSIC--IHSGMSQEERLTRYK---GFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD 296 (356)
Q Consensus 235 ~~l~~-------------~~~~~~~--~~~~~~~~~~~~~~~---~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~ 296 (356)
+.+.+ .++.+.+ ..|.|+-.+|.+.+. .|...+++||--..++++|+|+|.++.||++++..
T Consensus 478 ~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~ 557 (1518)
T COG4889 478 ESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRS 557 (1518)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCch
Confidence 66553 1333333 457888888865544 34567899988889999999999999999999999
Q ss_pred ChhhhhhccccccCCC
Q 018420 297 SADTYLHRVGRAGRFG 312 (356)
Q Consensus 297 s~~~~~Q~~GR~~R~~ 312 (356)
+..+.+|.+||+.|..
T Consensus 558 smVDIVQaVGRVMRKa 573 (1518)
T COG4889 558 SMVDIVQAVGRVMRKA 573 (1518)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999999964
No 129
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.85 E-value=1.1e-19 Score=147.20 Aligned_cols=180 Identities=33% Similarity=0.469 Sum_probs=138.3
Q ss_pred CccccHhhHhcC-CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
.|.++++.+..+ +.+++.+|||+|||.++...+.......+.. ++++++|+.+++.|+..++..............+.
T Consensus 12 ~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~-~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (201)
T smart00487 12 YQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGK-RVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYG 90 (201)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCC-cEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeC
Confidence 388999999988 9999999999999998888888877765433 79999999999999999998877554223344444
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
+ ...............+++++|++.+.............++++|+||+|.+.. ......+..+........+++++||
T Consensus 91 ~-~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~~~~~~~~~~~~v~~sa 168 (201)
T smart00487 91 G-DSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD-GGFGDQLEKLLKLLPKNVQLLLLSA 168 (201)
T ss_pred C-cchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc-CCcHHHHHHHHHhCCccceEEEEec
Confidence 4 3323333334444349999999999998887776777889999999999975 2566777777777777889999999
Q ss_pred cCccchHHHHHhhcCCCeEEEecc
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYVDD 183 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~~~ 183 (356)
||+.........+......+....
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 169 TPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CCchhHHHHHHHhcCCCEEEeCCc
Confidence 999887777777777655554443
No 130
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.85 E-value=2.7e-19 Score=166.94 Aligned_cols=315 Identities=18% Similarity=0.238 Sum_probs=204.0
Q ss_pred HhcCCcEEEEccCCCccchH---hHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchH
Q 018420 9 AILGMDVICQAKSGMGKTAV---FVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 85 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~---~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~ 85 (356)
+.+++++|+.-.+|-|||.. ++..+....... + ..|+|+|... +..|.+++..+. ++++.+++|.....
T Consensus 386 W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~--g-pflvvvplst-~~~W~~ef~~w~----~mn~i~y~g~~~sr 457 (1373)
T KOG0384|consen 386 WYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIH--G-PFLVVVPLST-ITAWEREFETWT----DMNVIVYHGNLESR 457 (1373)
T ss_pred HHhcccceehhhcCCCcchHHHHHHHHHHHhhhcc--C-CeEEEeehhh-hHHHHHHHHHHh----hhceeeeecchhHH
Confidence 34588999999999999943 333333333211 2 5899999865 556888888876 77999999975533
Q ss_pred HhHHH---HhcC-----CCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 86 IHKDL---LKNE-----CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 86 ~~~~~---~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
.-... .... .+++++||++.++.-.. .+.--.+.+++|||||++.+. ...+...+..+.- ...+++
T Consensus 458 ~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~---~~~l~~~l~~f~~-~~rlli 531 (1373)
T KOG0384|consen 458 QLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND---ESKLYESLNQFKM-NHRLLI 531 (1373)
T ss_pred HHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch---HHHHHHHHHHhcc-cceeee
Confidence 22221 1112 36899999999975221 111224567999999999542 2333333444432 347899
Q ss_pred EecCccc-hHHHHHhhc--CCCeEEE-----------------------------------eccccccccccc-------
Q 018420 158 SATLSKE-IRPVCKKFM--QDPMEIY-----------------------------------VDDEAKLTLHGL------- 192 (356)
Q Consensus 158 SaT~~~~-~~~~~~~~~--~~~~~~~-----------------------------------~~~~~~~~~~~~------- 192 (356)
|+||-.+ ++++. .++ ..|..+. +....+.....+
T Consensus 532 tgTPlQNsikEL~-sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~ 610 (1373)
T KOG0384|consen 532 TGTPLQNSLKELW-SLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSD 610 (1373)
T ss_pred cCCCccccHHHHH-HHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhH
Confidence 9998543 11111 111 1111110 000000000000
Q ss_pred ---------------------------------------eEEEEEcChhH----H------HHHHHHHHhc---------
Q 018420 193 ---------------------------------------VQHYIKLSELE----K------NRKLNDLLDA--------- 214 (356)
Q Consensus 193 ---------------------------------------~~~~~~~~~~~----~------~~~~~~~~~~--------- 214 (356)
.+.|......+ . ...+..++..
T Consensus 611 lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDK 690 (1373)
T KOG0384|consen 611 LQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDK 690 (1373)
T ss_pred HHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHH
Confidence 00011000000 0 1122222221
Q ss_pred ------cCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcC---CCcEEEEcCccccCCCCCC
Q 018420 215 ------LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG---NKRILVATDLVGRGIDIER 285 (356)
Q Consensus 215 ------~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~---~~~vlv~t~~~~~G~d~~~ 285 (356)
..++++|||..-+.....++++|..++++.-.+.|.+..+.|+..++-|.+. .+..|++|.+.+.|||+-.
T Consensus 691 LL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLat 770 (1373)
T KOG0384|consen 691 LLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLAT 770 (1373)
T ss_pred HHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccc
Confidence 1568999999999999999999999999999999999999999999999764 5678999999999999999
Q ss_pred CCEEEEecCCCChhhhhhccccccCCCCcceE--EEEEccC-CChHHHHHHHHHhc
Q 018420 286 VNIVINYDMPDSADTYLHRVGRAGRFGTKGLA--ITFVSSA-SDSDILNQVQARFE 338 (356)
Q Consensus 286 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~ 338 (356)
+++||+||..|++..-.|...||+|-|+...| |-++..+ -++++++..+.++.
T Consensus 771 ADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~Kmv 826 (1373)
T KOG0384|consen 771 ADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMV 826 (1373)
T ss_pred cceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhh
Confidence 99999999999999999999999999998765 4445543 34555666655544
No 131
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.84 E-value=4e-18 Score=165.42 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=91.2
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCC--CeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCC--CCEEEE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNF--PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER--VNIVIN 291 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~--~~~vi~ 291 (356)
.+++++|++++.+..+.+++.|..... ....+.-+++...+.++++.|+.++-.||++|....+|+|+|+ +.+||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 447899999999999999999986532 1223333444456788899999888889999999999999997 578988
Q ss_pred ecCCC------------------------------ChhhhhhccccccCCCCcceEEEEEccC-CChHHHHHHHHHhc
Q 018420 292 YDMPD------------------------------SADTYLHRVGRAGRFGTKGLAITFVSSA-SDSDILNQVQARFE 338 (356)
Q Consensus 292 ~~~~~------------------------------s~~~~~Q~~GR~~R~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 338 (356)
.+.|. ....+.|.+||..|..++..++++.+.. ....+-+.+-+.+.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 88664 1223469999999998887778888764 34444455554443
No 132
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.84 E-value=4.4e-19 Score=151.12 Aligned_cols=321 Identities=15% Similarity=0.203 Sum_probs=210.2
Q ss_pred ccccHhhH-hcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 2 QHECIPQA-ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~-~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
|.+.+... .+|..+++...+|-|||+.++..+.....+. ..+|+||. ++...|++.+++|+...- .+....+
T Consensus 203 QreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw----plliVcPA-svrftWa~al~r~lps~~--pi~vv~~ 275 (689)
T KOG1000|consen 203 QREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW----PLLIVCPA-SVRFTWAKALNRFLPSIH--PIFVVDK 275 (689)
T ss_pred hhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC----cEEEEecH-HHhHHHHHHHHHhccccc--ceEEEec
Confidence 55555554 4588999999999999987655444444444 58999995 688889999999986542 2334444
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.....+- .. .+.|.|.+++.+..+... ..-..+.+||+||+|++.+ +.....+..........++|++|+|
T Consensus 276 ~~D~~~~~---~t-~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~--sktkr~Ka~~dllk~akhvILLSGT 347 (689)
T KOG1000|consen 276 SSDPLPDV---CT-SNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKD--SKTKRTKAATDLLKVAKHVILLSGT 347 (689)
T ss_pred ccCCcccc---cc-CCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhc--cchhhhhhhhhHHHHhhheEEecCC
Confidence 33222111 11 147899999988665442 2224578899999999865 3344455666666566789999999
Q ss_pred Cccc-------------------hHHHHHhhcCCC-eEEEecc--------------------------ccccccccceE
Q 018420 161 LSKE-------------------IRPVCKKFMQDP-MEIYVDD--------------------------EAKLTLHGLVQ 194 (356)
Q Consensus 161 ~~~~-------------------~~~~~~~~~~~~-~~~~~~~--------------------------~~~~~~~~~~~ 194 (356)
|.-. ..++...++... .....+. ..+...++...
T Consensus 348 PavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~V 427 (689)
T KOG1000|consen 348 PAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREV 427 (689)
T ss_pred cccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEE
Confidence 8321 223333333211 1111000 01111111111
Q ss_pred EEEEcC--------------------hhH----------------HHHHHHHHHh------ccCCCeEEEEecchhhHHH
Q 018420 195 HYIKLS--------------------ELE----------------KNRKLNDLLD------ALDFNQVVIFVKSVSRAAE 232 (356)
Q Consensus 195 ~~~~~~--------------------~~~----------------~~~~~~~~~~------~~~~~~~ivf~~~~~~~~~ 232 (356)
.+.... ..+ +...+.+.+- ..++.+.+||+........
T Consensus 428 v~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~ 507 (689)
T KOG1000|consen 428 VYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDT 507 (689)
T ss_pred EEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHH
Confidence 111100 000 0001111111 1255789999999999999
Q ss_pred HHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcC-CCcE-EEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccC
Q 018420 233 LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NKRI-LVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 310 (356)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~v-lv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R 310 (356)
+...+.++++..+.+.|..+...|....+.|+.+ +..| +++..+.+.|+++...+.|++...++++.-++|.=.|+.|
T Consensus 508 Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHR 587 (689)
T KOG1000|consen 508 IQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHR 587 (689)
T ss_pred HHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhh
Confidence 9999999999999999999999999999999865 4555 4566889999999999999999999999999999999999
Q ss_pred CCCcceEEE--EEccC-CChHHHHHHHHHh
Q 018420 311 FGTKGLAIT--FVSSA-SDSDILNQVQARF 337 (356)
Q Consensus 311 ~~~~~~~~~--~~~~~-~~~~~~~~~~~~~ 337 (356)
.|+...+.+ ++..+ .|+..+..+.+++
T Consensus 588 iGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 588 IGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred ccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 999877643 33332 4445555666554
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.84 E-value=1.1e-18 Score=161.10 Aligned_cols=261 Identities=19% Similarity=0.211 Sum_probs=163.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 91 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 91 (356)
.+.-+..+.||.|||+++.+++......+. .|.+++++..|+.+-++++..+...+ |+.+++..++.+........
T Consensus 89 ~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~---~VhVvT~NdyLA~RD~e~m~pvy~~L-GLsvg~i~~~~~~~err~aY 164 (870)
T CHL00122 89 NDGKIAEMKTGEGKTLVATLPAYLNALTGK---GVHIVTVNDYLAKRDQEWMGQIYRFL-GLTVGLIQEGMSSEERKKNY 164 (870)
T ss_pred cCCccccccCCCCchHHHHHHHHHHHhcCC---ceEEEeCCHHHHHHHHHHHHHHHHHc-CCceeeeCCCCChHHHHHhc
Confidence 455789999999999998887754433333 68999999999999999988888877 99999988876665444433
Q ss_pred hcCCCcEEEechHHH-HHHHhcCCc------ccCCccEEEEeccccccccc-----------------------------
Q 018420 92 KNECPQIVVGTPGRI-LALARDKDL------SLKNVRHFILDECDKMLESL----------------------------- 135 (356)
Q Consensus 92 ~~~~~~i~v~T~~~l-~~~~~~~~~------~~~~~~~viiDE~H~~~~~~----------------------------- 135 (356)
. ++|+++|...| +.+++.... ..+.+.+.||||++.+.=+.
T Consensus 165 ~---~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~~~~~~v~~L~ 241 (870)
T CHL00122 165 L---KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLE 241 (870)
T ss_pred C---CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCccchHHHHHHHHHHHhcC
Confidence 3 48999999766 334443221 24668899999999886000
Q ss_pred ---cc---------------hhHHHHHH-----------------h------hCCCC-----------------------
Q 018420 136 ---DM---------------RRDVQEIF-----------------K------MTPHD----------------------- 151 (356)
Q Consensus 136 ---~~---------------~~~~~~~~-----------------~------~~~~~----------------------- 151 (356)
++ ...+..++ . .+..+
T Consensus 242 ~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iVDe~TGR~m~g 321 (870)
T CHL00122 242 KNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIVDEFTGRIMPG 321 (870)
T ss_pred cCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCC
Confidence 00 00000000 0 00000
Q ss_pred --------------------------------------CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccce
Q 018420 152 --------------------------------------KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 193 (356)
Q Consensus 152 --------------------------------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (356)
.++.+||+|......++ ...++-.... +....+..... .
T Consensus 322 rrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef-~~iY~l~vv~-IPtnkp~~R~d-~ 398 (870)
T CHL00122 322 RRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEF-EKIYNLEVVC-IPTHRPMLRKD-L 398 (870)
T ss_pred CccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHH-HHHhCCCEEE-CCCCCCcccee-C
Confidence 04667777776543333 2333322222 22222222222 2
Q ss_pred EEEEEcChhHHHHHHHHHH-hcc-CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCC-CHHHHHHHHHHhhcCCC-c
Q 018420 194 QHYIKLSELEKNRKLNDLL-DAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM-SQEERLTRYKGFKEGNK-R 269 (356)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~-~ 269 (356)
...+......+...+..-+ ..+ .+.|++|-+.+++..+.+++.|.+.|++...+++.- ....-.+++. ++|.. .
T Consensus 399 ~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA--~AG~~G~ 476 (870)
T CHL00122 399 PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVA--QAGRKGS 476 (870)
T ss_pred CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHH--hcCCCCc
Confidence 2233444444444444333 332 678999999999999999999999999999999863 2233334443 24543 5
Q ss_pred EEEEcCccccCCCCC
Q 018420 270 ILVATDLVGRGIDIE 284 (356)
Q Consensus 270 vlv~t~~~~~G~d~~ 284 (356)
|.|||+++++|.|+.
T Consensus 477 VTIATNMAGRGTDI~ 491 (870)
T CHL00122 477 ITIATNMAGRGTDII 491 (870)
T ss_pred EEEeccccCCCcCee
Confidence 999999999999984
No 134
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.84 E-value=2.1e-19 Score=160.81 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=104.9
Q ss_pred HHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCC-C-cEEEEcCccccCCC
Q 018420 207 KLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN-K-RILVATDLVGRGID 282 (356)
Q Consensus 207 ~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~-~vlv~t~~~~~G~d 282 (356)
.+..++... .+.++++|...-.....+...|..++++...+.|...-.+|..+++.|..++ + -.|++|.+.+.|+|
T Consensus 765 ~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GIN 844 (941)
T KOG0389|consen 765 KLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGIN 844 (941)
T ss_pred HHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceec
Confidence 333444433 4578999999888888888899999999999999999999999999998764 3 35789999999999
Q ss_pred CCCCCEEEEecCCCChhhhhhccccccCCCCcceEE--EEEccCCChHHHHHHH
Q 018420 283 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAI--TFVSSASDSDILNQVQ 334 (356)
Q Consensus 283 ~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~--~~~~~~~~~~~~~~~~ 334 (356)
+-++++||++|...++-.-.|.--|++|.|+...|. -++..+.-++.+..+.
T Consensus 845 Lt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA 898 (941)
T KOG0389|consen 845 LTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLA 898 (941)
T ss_pred ccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHH
Confidence 999999999999999999999999999999877764 4555555444444443
No 135
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=9.8e-21 Score=163.81 Aligned_cols=348 Identities=15% Similarity=0.074 Sum_probs=227.1
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCC---CceEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP---DIKVAV 77 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~---~~~v~~ 77 (356)
+|-+++..+-+|++.++.-.+.+||.+++.+++.......+.. ..+++.|+.++.+...+.+.-.....+ +-.|..
T Consensus 290 ~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~ 368 (1034)
T KOG4150|consen 290 ISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHAT-NSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEM 368 (1034)
T ss_pred hhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCccc-ceecchhHHHHhhccCCceEEEEEehhhhhcceeec
Confidence 3667788888899999999999999999998888777666554 689999999988776543221111111 222333
Q ss_pred EEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc----CCcccCCccEEEEeccccccccccch--hHHHHHHhhC---
Q 018420 78 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD----KDLSLKNVRHFILDECDKMLESLDMR--RDVQEIFKMT--- 148 (356)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~----~~~~~~~~~~viiDE~H~~~~~~~~~--~~~~~~~~~~--- 148 (356)
..+..... ...+.....+++++.++........ +...+-...++++||+|.+....+.. ..+.++...+
T Consensus 369 ~D~~sE~~--~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F 446 (1034)
T KOG4150|consen 369 SDKLSETT--KSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGF 446 (1034)
T ss_pred ccCCCchh--HHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHH
Confidence 33333322 3334444468999999888664432 22333445679999999987643211 2223332222
Q ss_pred --CCCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcCh---hHHHHHH---HHHHhcc--CCC
Q 018420 149 --PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE---LEKNRKL---NDLLDAL--DFN 218 (356)
Q Consensus 149 --~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~--~~~ 218 (356)
+.+.+++-.+||..+........+..+..........+...+....+...... .++...+ ..++.+. .+-
T Consensus 447 ~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~ 526 (1034)
T KOG4150|consen 447 EASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGL 526 (1034)
T ss_pred HhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCC
Confidence 24678999999998876554443333444444444433333333333222111 1121211 1222111 346
Q ss_pred eEEEEecchhhHHHHHHHHHh----CCC----CeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEE
Q 018420 219 QVVIFVKSVSRAAELNKLLVE----CNF----PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 290 (356)
Q Consensus 219 ~~ivf~~~~~~~~~~~~~l~~----~~~----~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi 290 (356)
++|.||+.+.-++.+....++ .+. .+.-+.|+....+|+++..++-.|+..-+|+|++++.|+|+..++.|+
T Consensus 527 R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl 606 (1034)
T KOG4150|consen 527 RCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL 606 (1034)
T ss_pred cEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE
Confidence 899999999999877655443 222 233477999999999999999999999999999999999999999999
Q ss_pred EecCCCChhhhhhccccccCCCCcceEEEEEcc-CCChHHHHHHHHHhcccCcccCcccccC
Q 018420 291 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS-ASDSDILNQVQARFEVDIKELPEQIDTS 351 (356)
Q Consensus 291 ~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (356)
..+.|.|...+.|..||+||.+++..++++... .-+..++.--...++....+|-.+.++.
T Consensus 607 ~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N~ 668 (1034)
T KOG4150|consen 607 HLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQNK 668 (1034)
T ss_pred EccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEecccH
Confidence 999999999999999999999998877655443 3444555555566677766666555543
No 136
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.83 E-value=4.1e-19 Score=165.46 Aligned_cols=313 Identities=17% Similarity=0.189 Sum_probs=202.4
Q ss_pred ccccHhhHhc----CCcEEEEccCCCccchHhHHHhhcCcCCC------CCCeeEEEEcCchHHHHHHHHHHHHHhccCC
Q 018420 2 QHECIPQAIL----GMDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTRELAYQICHEFERFSTYLP 71 (356)
Q Consensus 2 Q~~~~~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~ 71 (356)
|++.++.+.- +-+.|+|..+|-|||+..+..+......+ -.....+||||+ .|+..|..++.+|..
T Consensus 980 QqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~p--- 1055 (1549)
T KOG0392|consen 980 QQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFP--- 1055 (1549)
T ss_pred HHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcc---
Confidence 5666655542 56889999999999977654444333222 122358999996 799999999999874
Q ss_pred CceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCC
Q 018420 72 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 151 (356)
Q Consensus 72 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 151 (356)
-+++..+.|+........... ...+|+|++++.+.+-+..-. -..+.++|+||.|-+. +-...+.+..+.+..+
T Consensus 1056 fL~v~~yvg~p~~r~~lR~q~-~~~~iiVtSYDv~RnD~d~l~--~~~wNYcVLDEGHVik---N~ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1056 FLKVLQYVGPPAERRELRDQY-KNANIIVTSYDVVRNDVDYLI--KIDWNYCVLDEGHVIK---NSKTKLTKAVKQLRAN 1129 (1549)
T ss_pred hhhhhhhcCChHHHHHHHhhc-cccceEEeeHHHHHHHHHHHH--hcccceEEecCcceec---chHHHHHHHHHHHhhc
Confidence 457777777544333322222 225999999999975443211 1356789999999884 4455666666666544
Q ss_pred CcEEEEEecCccc-hH-----------------HHHHhhcCCCeEEE---------------------------------
Q 018420 152 KQVMMFSATLSKE-IR-----------------PVCKKFMQDPMEIY--------------------------------- 180 (356)
Q Consensus 152 ~~~i~~SaT~~~~-~~-----------------~~~~~~~~~~~~~~--------------------------------- 180 (356)
. .+.+|+||-.+ +. .....-+++|+...
T Consensus 1130 h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlK 1208 (1549)
T KOG0392|consen 1130 H-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLK 1208 (1549)
T ss_pred c-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4 77889998433 00 00011111111110
Q ss_pred eccccccccccceEEEEEcChh----------------------------------------------------------
Q 018420 181 VDDEAKLTLHGLVQHYIKLSEL---------------------------------------------------------- 202 (356)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 202 (356)
.+.-...+++.+..+|+...+.
T Consensus 1209 edVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~ 1288 (1549)
T KOG0392|consen 1209 EDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPD 1288 (1549)
T ss_pred HHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcch
Confidence 0000111112222222221110
Q ss_pred ---------------------HHHHHHHHHHhcc----------------CCCeEEEEecchhhHHHHHHHHHhC---CC
Q 018420 203 ---------------------EKNRKLNDLLDAL----------------DFNQVVIFVKSVSRAAELNKLLVEC---NF 242 (356)
Q Consensus 203 ---------------------~~~~~~~~~~~~~----------------~~~~~ivf~~~~~~~~~~~~~l~~~---~~ 242 (356)
.|..++..++... .+++++|||.-+..+..+.+.|.+. +.
T Consensus 1289 la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsV 1368 (1549)
T KOG0392|consen 1289 LAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSV 1368 (1549)
T ss_pred HHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCce
Confidence 0112233333211 3468999999999999887777654 44
Q ss_pred CeEEEecCCCHHHHHHHHHHhhcC-CCcEEE-EcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceE--E
Q 018420 243 PSICIHSGMSQEERLTRYKGFKEG-NKRILV-ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA--I 318 (356)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~f~~~-~~~vlv-~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~--~ 318 (356)
..+.+.|..++.+|.++.+.|+++ .++||+ +|.+.+.|+|+.++++||+++-.|++=.-.|.+-||+|.|+...+ +
T Consensus 1369 tymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1369 TYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVY 1448 (1549)
T ss_pred eEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeee
Confidence 555789999999999999999998 788875 668999999999999999999999999999999999999987654 4
Q ss_pred EEEccCC
Q 018420 319 TFVSSAS 325 (356)
Q Consensus 319 ~~~~~~~ 325 (356)
-++..+.
T Consensus 1449 RlItrGT 1455 (1549)
T KOG0392|consen 1449 RLITRGT 1455 (1549)
T ss_pred eehhccc
Confidence 4454443
No 137
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.82 E-value=6.9e-19 Score=132.30 Aligned_cols=118 Identities=45% Similarity=0.646 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccC
Q 018420 203 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 280 (356)
Q Consensus 203 ~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G 280 (356)
.+...+..++... .++++||||++...++.+++.|.+.+..+..+||++++.++..+++.|+++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 4556666666655 47899999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 281 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 281 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
+|+|.++++++++++++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999988877653
No 138
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.80 E-value=2e-18 Score=131.77 Aligned_cols=144 Identities=37% Similarity=0.498 Sum_probs=106.0
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 92 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 92 (356)
+++++.+|||+|||..++..+.......... ++++++|++.+++|+.+.+...... +..+..+.+......... ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~-~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGG-QVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEK-LL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCC-CEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHH-Hh
Confidence 4689999999999998887777766553333 8999999999999999988877643 467777777655443332 22
Q ss_pred cCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 93 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 93 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
....+++++|++.+.............++++|+||+|.+... .................+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ-GFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc-chHHHHHHHHhhCCccceEEEEeccC
Confidence 344699999999998877766555678899999999999763 22222122333345678899999997
No 139
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.80 E-value=1.4e-18 Score=150.08 Aligned_cols=283 Identities=19% Similarity=0.246 Sum_probs=181.7
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 91 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 91 (356)
.+-++-++||.||||.- +++.+...+ ..+|..|.+-|+..+++++... ++.+..++|.+.......
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCC--
Confidence 44567799999999954 344444333 4589999999999998887665 888888888654332221
Q ss_pred hcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccchHHHHHh
Q 018420 92 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK 171 (356)
Q Consensus 92 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 171 (356)
...+..+-||.++.- --..+++.|+||++.+.++..-......++.......+ +.+-|. +-++++.
T Consensus 257 -~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiH---LCGeps--vldlV~~ 322 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIH---LCGEPS--VLDLVRK 322 (700)
T ss_pred -CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhh---ccCCch--HHHHHHH
Confidence 223467778877763 12467889999999998754323333444443333222 223322 2223333
Q ss_pred h---cCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCC-eEEE
Q 018420 172 F---MQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP-SICI 247 (356)
Q Consensus 172 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~-~~~~ 247 (356)
. .++...+ ..|....+....+.+..-+.+...+-++| |-+++....+...+.+.+.. +.++
T Consensus 323 i~k~TGd~vev--------------~~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVI 387 (700)
T KOG0953|consen 323 ILKMTGDDVEV--------------REYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVI 387 (700)
T ss_pred HHhhcCCeeEE--------------EeecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEE
Confidence 2 2333222 22322232222233333344454444444 33557777888888887655 9999
Q ss_pred ecCCCHHHHHHHHHHhhc--CCCcEEEEcCccccCCCCCCCCEEEEecCC---------CChhhhhhccccccCCCCc--
Q 018420 248 HSGMSQEERLTRYKGFKE--GNKRILVATDLVGRGIDIERVNIVINYDMP---------DSADTYLHRVGRAGRFGTK-- 314 (356)
Q Consensus 248 ~~~~~~~~~~~~~~~f~~--~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~---------~s~~~~~Q~~GR~~R~~~~-- 314 (356)
+|+++++.|...-..|++ ++++|||||++++.|+|+ +.+.||+++.. -+..+..|..||+||.|..
T Consensus 388 YGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 388 YGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 999999999999999987 899999999999999998 78888887743 3677889999999998643
Q ss_pred -ceEEEEEccCCChHHHHHHHHHhcccCcc
Q 018420 315 -GLAITFVSSASDSDILNQVQARFEVDIKE 343 (356)
Q Consensus 315 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (356)
|.+..+.. +.+..+++.+....+.
T Consensus 467 ~G~vTtl~~-----eDL~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 467 QGEVTTLHS-----EDLKLLKRILKRPVEP 491 (700)
T ss_pred CceEEEeeH-----hhHHHHHHHHhCCchH
Confidence 43444433 3455666655544443
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=6.4e-17 Score=149.49 Aligned_cols=260 Identities=18% Similarity=0.212 Sum_probs=162.1
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 92 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 92 (356)
+--+..+.||.|||+++.+++......++ .|-+|+++..|+..-++++..+...+ |+.+++..++.+........
T Consensus 99 ~G~IAEM~TGEGKTL~atlpaylnAL~Gk---gVhVVTvNdYLA~RDae~m~~vy~~L-GLtvg~i~~~~~~~err~aY- 173 (939)
T PRK12902 99 EGQIAEMKTGEGKTLVATLPSYLNALTGK---GVHVVTVNDYLARRDAEWMGQVHRFL-GLSVGLIQQDMSPEERKKNY- 173 (939)
T ss_pred CCceeeecCCCChhHHHHHHHHHHhhcCC---CeEEEeCCHHHHHhHHHHHHHHHHHh-CCeEEEECCCCChHHHHHhc-
Confidence 34588999999999998887776655544 58899999999999999888887777 99999988766554433322
Q ss_pred cCCCcEEEechHHH-HHHHhc------CCcccCCccEEEEecccccccc-----------c----cchhHHHHHHhhCCC
Q 018420 93 NECPQIVVGTPGRI-LALARD------KDLSLKNVRHFILDECDKMLES-----------L----DMRRDVQEIFKMTPH 150 (356)
Q Consensus 93 ~~~~~i~v~T~~~l-~~~~~~------~~~~~~~~~~viiDE~H~~~~~-----------~----~~~~~~~~~~~~~~~ 150 (356)
.++|+++|...| +.+++. .....+.+.+.||||++.+.=+ . ........+...+..
T Consensus 174 --~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~~~~~~~~~L~~ 251 (939)
T PRK12902 174 --ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAAEVAAALQR 251 (939)
T ss_pred --CCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCccchHHHHHHHHHHHHhhh
Confidence 259999999877 333332 1223567888999999988610 0 000000000000000
Q ss_pred --------------CC----------------------------------------------------------------
Q 018420 151 --------------DK---------------------------------------------------------------- 152 (356)
Q Consensus 151 --------------~~---------------------------------------------------------------- 152 (356)
..
T Consensus 252 ~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TG 331 (939)
T PRK12902 252 KDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRNGEVVIVDEFTG 331 (939)
T ss_pred hcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEECCEEEEEECCCC
Confidence 00
Q ss_pred --------------------------------------------cEEEEEecCccchHHHHHhhcCCCeEEEeccccccc
Q 018420 153 --------------------------------------------QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLT 188 (356)
Q Consensus 153 --------------------------------------------~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (356)
++.+||+|......++...+ +-+.. ..+.....
T Consensus 332 R~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY-~l~Vv--~IPTnkP~ 408 (939)
T PRK12902 332 RVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTY-KLEVT--VIPTNRPR 408 (939)
T ss_pred CCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHh-CCcEE--EcCCCCCe
Confidence 34555555543333332222 22211 11111122
Q ss_pred cccceEEEEEcChhHHHHHHHHHHh-cc-CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecC-CCHHHHHHHHHHhhc
Q 018420 189 LHGLVQHYIKLSELEKNRKLNDLLD-AL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG-MSQEERLTRYKGFKE 265 (356)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~f~~ 265 (356)
.+......+......+...+..-+. .+ .+.|++|-+.+++..+.+++.|.+.|++...++.. .+...-.+++. ++
T Consensus 409 ~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa--~A 486 (939)
T PRK12902 409 RRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVA--QA 486 (939)
T ss_pred eeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHH--hc
Confidence 2222233344444455555554443 33 67899999999999999999999999999999986 33333344443 34
Q ss_pred CCC-cEEEEcCccccCCCCC
Q 018420 266 GNK-RILVATDLVGRGIDIE 284 (356)
Q Consensus 266 ~~~-~vlv~t~~~~~G~d~~ 284 (356)
|.. .|.|||+++++|.|+.
T Consensus 487 G~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 487 GRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred CCCCcEEEeccCCCCCcCEe
Confidence 544 5999999999999984
No 141
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.78 E-value=7.3e-18 Score=157.53 Aligned_cols=132 Identities=22% Similarity=0.361 Sum_probs=116.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecC-
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM- 294 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~- 294 (356)
.+.+++|||++.+.++.+++.|.+.|+++..+|+++++.+|..++..|+.|++.|+|||+.+++|+|+|.+++|++++.
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~e 524 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDAD 524 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCc
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ----CCChhhhhhccccccCCCCcceEEEEEccC--------CChHHHHHHHHHhcccCcccCccc
Q 018420 295 ----PDSADTYLHRVGRAGRFGTKGLAITFVSSA--------SDSDILNQVQARFEVDIKELPEQI 348 (356)
Q Consensus 295 ----~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
|.+..+|+||+||+||. ..|.++.+++.. .+....+.++..++.....+|..+
T Consensus 525 ifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 525 KEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred ccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 67999999999999996 688998888842 344555566667777777777554
No 142
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.78 E-value=1.9e-17 Score=155.20 Aligned_cols=305 Identities=19% Similarity=0.199 Sum_probs=176.4
Q ss_pred CccccHhhHhc----C--Cc--EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCC
Q 018420 1 MQHECIPQAIL----G--MD--VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPD 72 (356)
Q Consensus 1 ~Q~~~~~~~~~----~--~~--~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~ 72 (356)
+|.+|+..+.. . +- ++-.|.||+|||++ -.-++..+.....+.+..+....|+|.-|+-+.+++-.+.. +
T Consensus 412 WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~a-NARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~-~ 489 (1110)
T TIGR02562 412 WQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLA-NARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS-D 489 (1110)
T ss_pred hHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHH-HHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC-c
Confidence 57777777654 1 11 46689999999977 56666666666666688888999999999998888755433 2
Q ss_pred ceEEEEEcCcchHHh-------------------------------------------HHHHh-------cCCCcEEEec
Q 018420 73 IKVAVFYGGVNIKIH-------------------------------------------KDLLK-------NECPQIVVGT 102 (356)
Q Consensus 73 ~~v~~~~~~~~~~~~-------------------------------------------~~~~~-------~~~~~i~v~T 102 (356)
-...++.|+.....- ...+. --...+.|||
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 233333333211000 00000 0114799999
Q ss_pred hHHHHHHHh--cC-CcccCC----ccEEEEeccccccccccch--hHHHHHHhhCCCCCcEEEEEecCccchHHHHHh--
Q 018420 103 PGRILALAR--DK-DLSLKN----VRHFILDECDKMLESLDMR--RDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK-- 171 (356)
Q Consensus 103 ~~~l~~~~~--~~-~~~~~~----~~~viiDE~H~~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~-- 171 (356)
+++++.... +. ...+.. -+.||+||+|.+.. ..+. ..+.++... .+.++++||||+|+.....+..
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~-~~~~~L~rlL~w~~~--lG~~VlLmSATLP~~l~~~L~~Ay 646 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEP-EDLPALLRLVQLAGL--LGSRVLLSSATLPPALVKTLFRAY 646 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCH-HHHHHHHHHHHHHHH--cCCCEEEEeCCCCHHHHHHHHHHH
Confidence 999988663 21 111111 24599999998854 2222 222233333 3467999999999865433322
Q ss_pred ---------hcC---CCeEEE---ecccc-------------------------cc--ccccceEEEEEcChh-----HH
Q 018420 172 ---------FMQ---DPMEIY---VDDEA-------------------------KL--TLHGLVQHYIKLSEL-----EK 204 (356)
Q Consensus 172 ---------~~~---~~~~~~---~~~~~-------------------------~~--~~~~~~~~~~~~~~~-----~~ 204 (356)
..+ .+..+. +++.. .. ......-....++.. ..
T Consensus 647 ~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~ 726 (1110)
T TIGR02562 647 EAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENEST 726 (1110)
T ss_pred HHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHH
Confidence 122 222221 11000 00 000001111111111 11
Q ss_pred HHHHHHHH--------hcc------CCCe---EEEEecchhhHHHHHHHHHhC------CCCeEEEecCCCHHHHHHHHH
Q 018420 205 NRKLNDLL--------DAL------DFNQ---VVIFVKSVSRAAELNKLLVEC------NFPSICIHSGMSQEERLTRYK 261 (356)
Q Consensus 205 ~~~~~~~~--------~~~------~~~~---~ivf~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~ 261 (356)
...+...+ ..+ .+++ .+|-+++++.+..++..|... .+...+||+..+-..|..+.+
T Consensus 727 ~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~ 806 (1110)
T TIGR02562 727 YLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIER 806 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHH
Confidence 11111111 111 1222 588888888888888887765 234667899887666665543
Q ss_pred Hh----------------------hc----CCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCC
Q 018420 262 GF----------------------KE----GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 313 (356)
Q Consensus 262 ~f----------------------~~----~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 313 (356)
.. ++ +...|+|+|++++.|+|+ +++++| ..+.+.++++|++||+.|.+.
T Consensus 807 ~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 807 RLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred HHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 32 12 356799999999999998 577775 346889999999999999765
No 143
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.77 E-value=1.4e-18 Score=138.77 Aligned_cols=149 Identities=20% Similarity=0.197 Sum_probs=98.7
Q ss_pred ccccHhhHhc-------CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 2 QHECIPQAIL-------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 2 Q~~~~~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
|.+++..+.+ .+++++.+|||||||.+++..+..... ++++++|+.+|.+|+.+++..+........
T Consensus 8 Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~ 81 (184)
T PF04851_consen 8 QQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSEKYNFF 81 (184)
T ss_dssp HHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTTSEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhhhhhhc
Confidence 7788888874 588999999999999987765666555 799999999999999999976654321110
Q ss_pred EE---------EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCC-----------cccCCccEEEEecccccccc
Q 018420 75 VA---------VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD-----------LSLKNVRHFILDECDKMLES 134 (356)
Q Consensus 75 v~---------~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-----------~~~~~~~~viiDE~H~~~~~ 134 (356)
.. ....................+++++|++.+........ ......++||+||||++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~ 161 (184)
T PF04851_consen 82 EKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSD 161 (184)
T ss_dssp E--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCH
Confidence 00 01111111122233344556899999999987654311 22456789999999988662
Q ss_pred ccchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 135 LDMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
.. +..+.. .....++++||||.
T Consensus 162 ~~----~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 162 SS----YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp HH----HHHHHH--SSCCEEEEEESS-S
T ss_pred HH----HHHHHc--CCCCeEEEEEeCcc
Confidence 22 333333 45667999999986
No 144
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.77 E-value=1.1e-18 Score=118.08 Aligned_cols=78 Identities=45% Similarity=0.729 Sum_probs=75.2
Q ss_pred HHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCC
Q 018420 235 KLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 312 (356)
Q Consensus 235 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 312 (356)
+.|+..++++..+||++++.+|..+++.|++++..|||+|+++++|+|+|.+++|+++++|+|...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999976
No 145
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.77 E-value=1.5e-15 Score=143.10 Aligned_cols=105 Identities=17% Similarity=0.219 Sum_probs=78.5
Q ss_pred CCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhh----cCCCcEEEEcCccccCCCCCC--CCEEE
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFK----EGNKRILVATDLVGRGIDIER--VNIVI 290 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~----~~~~~vlv~t~~~~~G~d~~~--~~~vi 290 (356)
.++++|++++.+.++.++..|...........+. ..+..+++.|+ .++-.||++|....+|+|+|+ +++||
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEE
Confidence 3558999999999999999987543233444553 24556665565 467789999999999999997 78999
Q ss_pred EecCCCC------------------------------hhhhhhccccccCCCCcceEEEEEccC
Q 018420 291 NYDMPDS------------------------------ADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 291 ~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
+.+.|.. ...+.|.+||..|..++..++++.++.
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 8886641 113469999999988777778887764
No 146
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.75 E-value=3.7e-16 Score=150.94 Aligned_cols=288 Identities=17% Similarity=0.137 Sum_probs=166.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 91 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 91 (356)
++..+||+.+|||||++.+..+-..... +..++|++|+.++.|-.|+.+++..+........ ...+...-.+.+
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-----~~~s~~~Lk~~l 346 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-----KAESTSELKELL 346 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-----cccCHHHHHHHH
Confidence 3568999999999998865544444433 6666999999999999999999998865431111 344555556666
Q ss_pred hcCCCcEEEechHHHHHHHhcCC-c-ccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccchHHH-
Q 018420 92 KNECPQIVVGTPGRILALARDKD-L-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV- 168 (356)
Q Consensus 92 ~~~~~~i~v~T~~~l~~~~~~~~-~-~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~- 168 (356)
......|++||.+.|-....... . .-++--+||+||||+.-. ...-..+...++ ++..+++|+||-..-...
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~----G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~t 421 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY----GELAKLLKKALK-KAIFIGFTGTPIFKEDKDT 421 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc----cHHHHHHHHHhc-cceEEEeeCCccccccccc
Confidence 65656999999999977665431 1 122333589999997522 223333333443 467999999995432211
Q ss_pred HHhhcCCCeEEEeccccccccccceEEEEEc----------C-hh---------------------------------HH
Q 018420 169 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL----------S-EL---------------------------------EK 204 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~---------------------------------~~ 204 (356)
-...+++....+.....-.+-..+...|... . .. ..
T Consensus 422 t~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~ 501 (962)
T COG0610 422 TKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRL 501 (962)
T ss_pred hhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHH
Confidence 1223333333332111111111101111000 0 00 00
Q ss_pred H----HHHHHHHh-ccCCCeEEEEecchhhHHHHHHHHHhCCC---------C-eEEEe------c------CCCHHHHH
Q 018420 205 N----RKLNDLLD-ALDFNQVVIFVKSVSRAAELNKLLVECNF---------P-SICIH------S------GMSQEERL 257 (356)
Q Consensus 205 ~----~~~~~~~~-~~~~~~~ivf~~~~~~~~~~~~~l~~~~~---------~-~~~~~------~------~~~~~~~~ 257 (356)
. +....+.. .....++++.++++..+..+.+...+... . ...+. . ........
T Consensus 502 ~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (962)
T COG0610 502 IRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLKDEKK 581 (962)
T ss_pred HHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHHHHHh
Confidence 0 00001111 22456888888888855555444333100 0 00000 0 01122233
Q ss_pred HHHHH--hhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCC
Q 018420 258 TRYKG--FKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 311 (356)
Q Consensus 258 ~~~~~--f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 311 (356)
..... ......++||.++++-+|+|.|.++++. +|.|.-...++|.+.|++|.
T Consensus 582 ~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 582 DLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred hhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccC
Confidence 33444 3456789999999999999999999998 55567777899999999994
No 147
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=7.8e-17 Score=137.35 Aligned_cols=294 Identities=15% Similarity=0.166 Sum_probs=176.7
Q ss_pred HhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchH
Q 018420 6 IPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK 85 (356)
Q Consensus 6 ~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~ 85 (356)
...+.+++.+++++.||||||...--..+........ .|.---|++.-+-+++.+...-..-.-|-.|+....-++..
T Consensus 56 ~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~--~v~CTQprrvaamsva~RVadEMDv~lG~EVGysIrfEdC~ 133 (699)
T KOG0925|consen 56 LKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLT--GVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCT 133 (699)
T ss_pred HHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhcc--ceeecCchHHHHHHHHHHHHHHhccccchhccccccccccC
Confidence 3444567788999999999996544333332222221 45666788888888777665433111122333322211111
Q ss_pred HhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccc-hhHHHHHHhhCCCCCcEEEEEecCccc
Q 018420 86 IHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM-RRDVQEIFKMTPHDKQVMMFSATLSKE 164 (356)
Q Consensus 86 ~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~-~~~~~~~~~~~~~~~~~i~~SaT~~~~ 164 (356)
... +-+-+||-.++++...... .+..++++|+||||.-.-..+. ...++...... ++.++|.+|||...
T Consensus 134 ~~~-------T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a- 203 (699)
T KOG0925|consen 134 SPN-------TLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDA- 203 (699)
T ss_pred Chh-------HHHHHhcchHHHHHHhhCc-ccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccch-
Confidence 001 1122455555554333222 3578899999999976432222 23344554444 58899999999764
Q ss_pred hHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHH----HHHHHhccCCCeEEEEecchhhHHHHHHHHHhC
Q 018420 165 IRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRK----LNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 240 (356)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~ 240 (356)
..+..+++++..+.+....+ ....|....+.+..+. +..+......+.+++|....+..+..++.+...
T Consensus 204 --~Kfq~yf~n~Pll~vpg~~P-----vEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re 276 (699)
T KOG0925|consen 204 --EKFQRYFGNAPLLAVPGTHP-----VEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISRE 276 (699)
T ss_pred --HHHHHHhCCCCeeecCCCCc-----eEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHH
Confidence 34566666665555543221 1123333333332222 222223335688999999999999998888753
Q ss_pred ---------CCCeEEEecCCCHHHHHHHHHHhh---cC--CCcEEEEcCccccCCCCCCCCEEEEec-------------
Q 018420 241 ---------NFPSICIHSGMSQEERLTRYKGFK---EG--NKRILVATDLVGRGIDIERVNIVINYD------------- 293 (356)
Q Consensus 241 ---------~~~~~~~~~~~~~~~~~~~~~~f~---~~--~~~vlv~t~~~~~G~d~~~~~~vi~~~------------- 293 (356)
..++..++ +.++..+++... +| ..+|+|+|..++..+.++++.+||.-+
T Consensus 277 ~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRv 352 (699)
T KOG0925|consen 277 VDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRV 352 (699)
T ss_pred HHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceee
Confidence 23444455 333444433222 12 357999999999999999999998655
Q ss_pred -----CCCChhhhhhccccccCCCCcceEEEEEcc
Q 018420 294 -----MPDSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 294 -----~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
.|-|..+-.||.||+||. .+|.|+.++..
T Consensus 353 esllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 353 ESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred eeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 355788889999999996 69999998874
No 148
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.74 E-value=5.6e-16 Score=147.13 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=84.8
Q ss_pred HHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCC-eEEEecCCCHHHHHHHHHHhhcCCC-cEEEEcCccccCCCCC
Q 018420 207 KLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP-SICIHSGMSQEERLTRYKGFKEGNK-RILVATDLVGRGIDIE 284 (356)
Q Consensus 207 ~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~-~vlv~t~~~~~G~d~~ 284 (356)
.+..++...+ ++++||+++.+.++.+.+.+...... .....|..+.. +.++.|..+.- .++|++..+++|+|+|
T Consensus 470 ~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~ 545 (654)
T COG1199 470 YLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFP 545 (654)
T ss_pred HHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCC
Confidence 3444444444 58999999999999999999987653 34444444333 66777766544 8999999999999999
Q ss_pred C--CCEEEEecCCC------------------------------ChhhhhhccccccCCCCcceEEEEEcc
Q 018420 285 R--VNIVINYDMPD------------------------------SADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 285 ~--~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
+ +..||+.+.|. ....+.|.+||+.|...+..++++.+.
T Consensus 546 g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 546 GDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 8 57888888664 234557999999998777778888875
No 149
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.74 E-value=3.6e-17 Score=151.39 Aligned_cols=282 Identities=13% Similarity=0.098 Sum_probs=170.7
Q ss_pred EEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHh
Q 018420 16 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLK 92 (356)
Q Consensus 16 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~ 92 (356)
+..+.+|||||.+|+-.+...+..++ .+++++|...|+.|+.+.++..++ +..+..+|++.+.....+ ...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHh
Confidence 33444699999999888877777655 699999999999999999987763 246888998776543332 344
Q ss_pred cCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccccc-----chhHHHHHHhhCCCCCcEEEEEecCccchHH
Q 018420 93 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD-----MRRDVQEIFKMTPHDKQVMMFSATLSKEIRP 167 (356)
Q Consensus 93 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 167 (356)
++...|+|+|-..++ .++.++++|||||=|..+.... ..+.+....... .++++|+.||||+-....
T Consensus 238 ~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~-~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 238 RGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ-HGCALLIGGHARTAEAQA 309 (665)
T ss_pred CCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH-cCCcEEEECCCCCHHHHH
Confidence 677799999988886 6788999999999997764422 123333333333 567899999999866544
Q ss_pred HHHhhcCCCeEEEeccccccccccceEEEEEcCh------------hHHHHHHHHHHhccCCCeEEEEecchhhHHHHHH
Q 018420 168 VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE------------LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNK 235 (356)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~ 235 (356)
.+..- ....+..... ................ .-....+..+-+....+++|+|.|.+..+..+.
T Consensus 310 ~~~~g--~~~~~~~~~~-~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~l~- 385 (665)
T PRK14873 310 LVESG--WAHDLVAPRP-VVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPSLA- 385 (665)
T ss_pred HHhcC--cceeeccccc-cccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCeeE-
Confidence 43321 1110000000 0000000011111000 001123333333444459999999887776541
Q ss_pred HHHhCCCCeE------------------EEecCCC--------------------------------------HHHHHHH
Q 018420 236 LLVECNFPSI------------------CIHSGMS--------------------------------------QEERLTR 259 (356)
Q Consensus 236 ~l~~~~~~~~------------------~~~~~~~--------------------------------------~~~~~~~ 259 (356)
..++|.... |.+++.. ..++..+
T Consensus 386 -C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~~ 464 (665)
T PRK14873 386 -CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQV 464 (665)
T ss_pred -hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChHHH
Confidence 222221111 1111000 1123346
Q ss_pred HHHhhcCCCcEEEEcC----ccccCCCCCCCCEEEEecCCC------------ChhhhhhccccccCCCCcceEEEEEc
Q 018420 260 YKGFKEGNKRILVATD----LVGRGIDIERVNIVINYDMPD------------SADTYLHRVGRAGRFGTKGLAITFVS 322 (356)
Q Consensus 260 ~~~f~~~~~~vlv~t~----~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~~~~~~~~~~~~ 322 (356)
++.|. ++.+|||+|+ ++. ++...|++++... ....+.|..||+||..++|.+++...
T Consensus 465 l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~ 537 (665)
T PRK14873 465 VDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAE 537 (665)
T ss_pred HHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 67776 5899999999 555 3567776666431 34455799999999988999988753
No 150
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.74 E-value=4.3e-16 Score=146.05 Aligned_cols=306 Identities=17% Similarity=0.221 Sum_probs=197.3
Q ss_pred CccccHhhHhc-CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+|.+.++.+.+ +.++++.+|+|||||.++-++++..- ...+++++.|..+.+..++..+.+-.....|..+..+.
T Consensus 1147 iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~----~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1147 IQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPD----TIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred ceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCc----cceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 47788887765 67899999999999999888877721 22389999999999888777776544444588999999
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch----hHHHHHHhhCCCCCcEE
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR----RDVQEIFKMTPHDKQVM 155 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~----~~~~~~~~~~~~~~~~i 155 (356)
|....+.. .+.. .+|+|+||+++-.+ . .++.+++.|+||.|.+.+..+-. -.+..+...+.+..+++
T Consensus 1223 ge~s~~lk--l~~~--~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v 1293 (1674)
T KOG0951|consen 1223 GETSLDLK--LLQK--GQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVV 1293 (1674)
T ss_pred CccccchH--Hhhh--cceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEE
Confidence 87665433 2233 38999999999655 2 66889999999999987532211 11444444455667789
Q ss_pred EEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhH-----HHHHHHHHHh--ccCCCeEEEEecchh
Q 018420 156 MFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-----KNRKLNDLLD--ALDFNQVVIFVKSVS 228 (356)
Q Consensus 156 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~ivf~~~~~ 228 (356)
++|..+... .+. ........+.+.......+..+....+...... +.......+. ...+++.+||.++++
T Consensus 1294 ~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk 1370 (1674)
T KOG0951|consen 1294 ALSSSLANA-RDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRK 1370 (1674)
T ss_pred Eeehhhccc-hhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccch
Confidence 998887643 222 111111222222222222222222222222111 1111112222 226689999999999
Q ss_pred hHHHHHHHHHhC----------------------CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCC
Q 018420 229 RAAELNKLLVEC----------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 286 (356)
Q Consensus 229 ~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~ 286 (356)
.+..++..+-.. ..+...-|.+++..+..-+-..|..|.+.|+|...- ..|+-. ..
T Consensus 1371 ~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~-~~ 1448 (1674)
T KOG0951|consen 1371 HARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKL-KA 1448 (1674)
T ss_pred hhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccc-cc
Confidence 998876544331 112222277888888888888999999999988765 677665 35
Q ss_pred CEEEEec-----------CCCChhhhhhccccccCCCCcceEEEEEccCCCh
Q 018420 287 NIVINYD-----------MPDSADTYLHRVGRAGRFGTKGLAITFVSSASDS 327 (356)
Q Consensus 287 ~~vi~~~-----------~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~ 327 (356)
+.|+.++ .+.+.....|+.|++.| .|.|+++.+.....
T Consensus 1449 ~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~ 1497 (1674)
T KOG0951|consen 1449 HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKE 1497 (1674)
T ss_pred eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHH
Confidence 5555444 34578889999999999 55788888754443
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=3.3e-15 Score=141.97 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=80.5
Q ss_pred CCeEEEEecchhhHHHHHHHHHhCCC-------CeEEEecCCCHHHHHHHHHHhhc----CCCcEEEEc--CccccCCCC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVECNF-------PSICIHSGMSQEERLTRYKGFKE----GNKRILVAT--DLVGRGIDI 283 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~f~~----~~~~vlv~t--~~~~~G~d~ 283 (356)
++.++||+++....+.+.+.+...+. +.++.-+. ...++..+++.|+. ++-.||+|+ ..++||+|+
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf 600 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDF 600 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcccc
Confidence 47899999999999999988876432 23333332 22567788888854 455699999 889999999
Q ss_pred CC--CCEEEEecCCC-Ch------------------------------hhhhhccccccCCCCcceEEEEEccC
Q 018420 284 ER--VNIVINYDMPD-SA------------------------------DTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 284 ~~--~~~vi~~~~~~-s~------------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
++ +..||+++.|. ++ ....|.+||+.|...+..++++.|..
T Consensus 601 ~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~R 674 (705)
T TIGR00604 601 CDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDKR 674 (705)
T ss_pred CCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEehh
Confidence 98 78999998775 11 23369999999988888888888753
No 152
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=3.6e-17 Score=150.25 Aligned_cols=302 Identities=18% Similarity=0.231 Sum_probs=195.7
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchH-HhHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK-IHKDL 90 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~ 90 (356)
+-+.++...+|-|||...+..+.............+|+||+..|.. |..++..+. |++....+.|..... .....
T Consensus 413 nLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWa---PSv~~i~YkGtp~~R~~l~~q 488 (1157)
T KOG0386|consen 413 NLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWA---PSVQKIQYKGTPQQRSGLTKQ 488 (1157)
T ss_pred CcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccc---cceeeeeeeCCHHHHhhHHHH
Confidence 3467999999999996655444433333222226899999987766 877776554 677888888754422 22233
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccch-----
Q 018420 91 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI----- 165 (356)
Q Consensus 91 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~----- 165 (356)
+..+.++|+++|++.+.. +...+..-++.++||||.|++.+ ....+...+...-.....+++|+||..+-
T Consensus 489 ir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKN---a~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELW 563 (1157)
T KOG0386|consen 489 QRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKN---AICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELW 563 (1157)
T ss_pred HhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccc---hhhHHHHHhhccccchhhhhhcCChhhhccHHHH
Confidence 445778999999998864 11111222456799999999954 22333333332223344677888863220
Q ss_pred ----------H---HHHHhhcCCCe-------EE----------------------------------------------
Q 018420 166 ----------R---PVCKKFMQDPM-------EI---------------------------------------------- 179 (356)
Q Consensus 166 ----------~---~~~~~~~~~~~-------~~---------------------------------------------- 179 (356)
. ..+..|++.|. ..
T Consensus 564 aLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSa 643 (1157)
T KOG0386|consen 564 ALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSA 643 (1157)
T ss_pred HHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhh
Confidence 0 00000000000 00
Q ss_pred ---------------Eeccc-cc----------cccccceEE-EEE----------------cChhHHHHHHHHHHhcc-
Q 018420 180 ---------------YVDDE-AK----------LTLHGLVQH-YIK----------------LSELEKNRKLNDLLDAL- 215 (356)
Q Consensus 180 ---------------~~~~~-~~----------~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~~~~- 215 (356)
..+.. .. ...+.+.++ |.. .....+.+.+..++...
T Consensus 644 lQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLk 723 (1157)
T KOG0386|consen 644 LQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLK 723 (1157)
T ss_pred hhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHH
Confidence 00000 00 000000000 000 01112455566665544
Q ss_pred -CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCC---cEEEEcCccccCCCCCCCCEEEE
Q 018420 216 -DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK---RILVATDLVGRGIDIERVNIVIN 291 (356)
Q Consensus 216 -~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~vlv~t~~~~~G~d~~~~~~vi~ 291 (356)
.+++++.||.--.....+..+|.-.+++...+.|....++|-..++.|+.... .+|++|.+.+.|+|++-++.||+
T Consensus 724 atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii 803 (1157)
T KOG0386|consen 724 ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII 803 (1157)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE
Confidence 56899999999999999999999999999999999999999999999987643 36789999999999999999999
Q ss_pred ecCCCChhhhhhccccccCCCCcceEEEEEc
Q 018420 292 YDMPDSADTYLHRVGRAGRFGTKGLAITFVS 322 (356)
Q Consensus 292 ~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~ 322 (356)
|+..|++....|+--|+.|.|+...+-++..
T Consensus 804 fdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 804 FDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred ecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 9999999999999999999998877765543
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.72 E-value=6.9e-16 Score=131.95 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=97.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcC-CCcEE-EEcCccccCCCCCCCCEEEEec
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG-NKRIL-VATDLVGRGIDIERVNIVINYD 293 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~vl-v~t~~~~~G~d~~~~~~vi~~~ 293 (356)
..-+.|||...-....-+.-.|.+.|..++-+.|+|++..|...++.|.++ .+.|+ ++-.+.+..+|+--+++|+++|
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmD 716 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMD 716 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeec
Confidence 335789999888888888888999999999999999999999999999876 56665 5558999999999999999999
Q ss_pred CCCChhhhhhccccccCCCCcce--EEEEEccCCChHHHHHHHH
Q 018420 294 MPDSADTYLHRVGRAGRFGTKGL--AITFVSSASDSDILNQVQA 335 (356)
Q Consensus 294 ~~~s~~~~~Q~~GR~~R~~~~~~--~~~~~~~~~~~~~~~~~~~ 335 (356)
+.|++.--.|...|+.|.|+..+ ++.|...+.-++-+-.+++
T Consensus 717 PWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQe 760 (791)
T KOG1002|consen 717 PWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQE 760 (791)
T ss_pred ccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHH
Confidence 99999999999999999998665 4555554433333334443
No 154
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=9.9e-16 Score=136.01 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=96.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhc--CCCcEE-EEcCccccCCCCCCCCEEEEe
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE--GNKRIL-VATDLVGRGIDIERVNIVINY 292 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~~vl-v~t~~~~~G~d~~~~~~vi~~ 292 (356)
...+++|...-.....-+...|++.|....-++|.....+|.++++.|+. |..+|+ ++-.+.+.|+|+-..+|+|.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 33566776666666777778888889999999999999999999999974 445665 455899999999999999999
Q ss_pred cCCCChhhhhhccccccCCCCcceEEE--EEccCCChHHHHHHH
Q 018420 293 DMPDSADTYLHRVGRAGRFGTKGLAIT--FVSSASDSDILNQVQ 334 (356)
Q Consensus 293 ~~~~s~~~~~Q~~GR~~R~~~~~~~~~--~~~~~~~~~~~~~~~ 334 (356)
|..|++.--.|..-|+-|.|+...+++ +++.+.-+.-+..++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQ 868 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQ 868 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHH
Confidence 999999999999999999999888764 455555554444444
No 155
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=2.3e-15 Score=140.84 Aligned_cols=128 Identities=23% Similarity=0.298 Sum_probs=98.7
Q ss_pred EEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCC-cEEE
Q 018420 196 YIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK-RILV 272 (356)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~vlv 272 (356)
.+......+...+..-+... .+.|+||-+.+++..+.+.++|...|++.-.+++.....+..-+- ++|.. .|.|
T Consensus 605 ~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA---~AG~~GaVTI 681 (1112)
T PRK12901 605 LVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVA---EAGQPGTVTI 681 (1112)
T ss_pred eEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHH---hcCCCCcEEE
Confidence 34445556666555555443 778999999999999999999999999988888875544333222 33433 5899
Q ss_pred EcCccccCCCCCC--------CCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCC
Q 018420 273 ATDLVGRGIDIER--------VNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 273 ~t~~~~~G~d~~~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 326 (356)
||+|+++|.|+.- --+||....+.|.+--.|..||+||+|.+|.+-.+++-.++
T Consensus 682 ATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 682 ATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred eccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 9999999999962 23788788899999999999999999999999888886433
No 156
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.69 E-value=1.1e-15 Score=135.79 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=95.0
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCc-EEEEcCccccCCCCCCCCEEEEecC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR-ILVATDLVGRGIDIERVNIVINYDM 294 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-vlv~t~~~~~G~d~~~~~~vi~~~~ 294 (356)
.++++++|+.--+....+.++|...+++...+.|...-.+|++++++|+..++- .|++|.+.+.|+|+..++.||+|+.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 457899999999999999999999999999999999999999999999987765 4789999999999999999999999
Q ss_pred CCChhhhhhccccccCCCCcceEE
Q 018420 295 PDSADTYLHRVGRAGRFGTKGLAI 318 (356)
Q Consensus 295 ~~s~~~~~Q~~GR~~R~~~~~~~~ 318 (356)
.|++..-.|.+.|+.|.|+...+.
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvt 1146 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVT 1146 (1185)
T ss_pred CCCcchhhHHHHHHHhccCcccee
Confidence 999999999999999999876643
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.67 E-value=1e-14 Score=133.78 Aligned_cols=291 Identities=14% Similarity=0.219 Sum_probs=179.1
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 92 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 92 (356)
.-.+|.+|+|||||.+.+-++...+. .+.. +++++..+++|+.+...+++...- +++. .+...... .+.
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~-~~~~-~VLvVShRrSL~~sL~~rf~~~~l--~gFv--~Y~d~~~~-----~i~ 118 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK-NPDK-SVLVVSHRRSLTKSLAERFKKAGL--SGFV--NYLDSDDY-----IID 118 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc-CCCC-eEEEEEhHHHHHHHHHHHHhhcCC--Ccce--eeeccccc-----ccc
Confidence 44689999999999875554444433 2222 799999999999999998875421 1222 22211111 111
Q ss_pred cCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc-----ccc-hhHHHHHHhhCCCCCcEEEEEecCccchH
Q 018420 93 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-----LDM-RRDVQEIFKMTPHDKQVMMFSATLSKEIR 166 (356)
Q Consensus 93 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~-----~~~-~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 166 (356)
....+-+++..+++.+.. ...+.++|+||+||+-..... ... ...+..+...+.....+|++-|++.+..-
T Consensus 119 ~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tv 195 (824)
T PF02399_consen 119 GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTV 195 (824)
T ss_pred ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHH
Confidence 112367777888886543 224567899999999877642 111 12233344555667789999999999888
Q ss_pred HHHHhhcCCC-eEEEeccccccccccceEEEEEc----------------------------------ChhHHHHHHHHH
Q 018420 167 PVCKKFMQDP-MEIYVDDEAKLTLHGLVQHYIKL----------------------------------SELEKNRKLNDL 211 (356)
Q Consensus 167 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~ 211 (356)
+++....++. ..+................+... ...........+
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L 275 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSEL 275 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHH
Confidence 8888765543 33322221111111111111000 000111222333
Q ss_pred Hhcc-CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCC--CCE
Q 018420 212 LDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER--VNI 288 (356)
Q Consensus 212 ~~~~-~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~--~~~ 288 (356)
.... .++++-||+.+...++.+++..+....++..+++..+..+. +. .++.+|++.|+++..|+++.. .+-
T Consensus 276 ~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 276 LARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred HHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceE
Confidence 3333 45678889999999999999999999999999887655522 22 457889999999999999965 344
Q ss_pred EEEecCC----CChhhhhhccccccCCCCcceEEEEEccC
Q 018420 289 VINYDMP----DSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 289 vi~~~~~----~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
++-|=.| .+..+..|++||+.... ....+++++..
T Consensus 350 ~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 350 MFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 4444222 24456899999996653 56677777753
No 158
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.67 E-value=8.2e-15 Score=136.50 Aligned_cols=108 Identities=19% Similarity=0.249 Sum_probs=97.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCC--CcEEEEcCccccCCCCCCCCEEEEec
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN--KRILVATDLVGRGIDIERVNIVINYD 293 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~vlv~t~~~~~G~d~~~~~~vi~~~ 293 (356)
.+++++||+........+..+|..+|+..+.+.|...-++|..+++.|+.+. ...+++|-..+.|+|+-.++.||+||
T Consensus 1275 eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEec
Confidence 5678999999999999999999999999999999999999999999999874 35688999999999999999999999
Q ss_pred CCCChhhhhhccccccCCCCcceE--EEEEcc
Q 018420 294 MPDSADTYLHRVGRAGRFGTKGLA--ITFVSS 323 (356)
Q Consensus 294 ~~~s~~~~~Q~~GR~~R~~~~~~~--~~~~~~ 323 (356)
..|++..-.|.--|+.|.|+...+ |-+++.
T Consensus 1355 sDwNPtMDaQAQDrChRIGqtRDVHIYRLISe 1386 (1958)
T KOG0391|consen 1355 SDWNPTMDAQAQDRCHRIGQTRDVHIYRLISE 1386 (1958)
T ss_pred CCCCchhhhHHHHHHHhhcCccceEEEEeecc
Confidence 999999999999999998887665 444554
No 159
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.66 E-value=5.3e-16 Score=106.18 Aligned_cols=81 Identities=46% Similarity=0.762 Sum_probs=76.5
Q ss_pred HHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCC
Q 018420 232 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 311 (356)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 311 (356)
.+++.|...+..+..+||++++.+|...++.|+.++..+|++|+++++|+|+|.+++|++++++++...+.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 45677888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 018420 312 G 312 (356)
Q Consensus 312 ~ 312 (356)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 160
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.53 E-value=8.4e-14 Score=101.32 Aligned_cols=137 Identities=18% Similarity=0.155 Sum_probs=79.3
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 90 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (356)
+|+-.++...||+|||.-.+..++........ ++|++.|||.+++.+.+.++ +..+..-..-.. .
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~--rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~--~---- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRL--RVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARM--R---- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT----EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS-------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccC--eEEEecccHHHHHHHHHHHh-------cCCcccCceeee--c----
Confidence 45667899999999998655554443332222 89999999999988877664 223333222111 0
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch-hHHHHHHhhCCCCCcEEEEEecCccch
Q 018420 91 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPHDKQVMMFSATLSKEI 165 (356)
Q Consensus 91 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~-~~~~~~~~~~~~~~~~i~~SaT~~~~~ 165 (356)
...+..-|-++|+..+...+.+ .....+++++|+||||-... .... ..+....... ....+|++|||||...
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp-~sIA~rg~l~~~~~~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDP-TSIAARGYLRELAES-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SH-HHHHHHHHHHHHHHT-TS-EEEEEESS-TT--
T ss_pred cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCH-HHHhhheeHHHhhhc-cCeeEEEEeCCCCCCC
Confidence 1123357899999998887666 44568899999999996533 2211 1122222222 3467999999998653
No 161
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.48 E-value=2.9e-12 Score=117.77 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=89.6
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----------------------CCCeEEEecCCCHHHHHHHHHHhhcCC---C-c
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----------------------NFPSICIHSGMSQEERLTRYKGFKEGN---K-R 269 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----------------------~~~~~~~~~~~~~~~~~~~~~~f~~~~---~-~ 269 (356)
-+.+.|||..+......+..+|... |..-..+.|...-..|......|+.-. . -
T Consensus 1141 IGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl 1220 (1567)
T KOG1015|consen 1141 IGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARL 1220 (1567)
T ss_pred hcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEE
Confidence 4578999999999999888888752 334455778888899999999998642 2 3
Q ss_pred EEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 270 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 270 vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
.||+|.+.+.|+|+-.++.||+||..|++.--.|.+=|+.|.|+..+||++
T Consensus 1221 ~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1221 FLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 689999999999999999999999999999999999999999999988765
No 162
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.44 E-value=1.9e-12 Score=119.86 Aligned_cols=298 Identities=20% Similarity=0.262 Sum_probs=184.1
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 92 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 92 (356)
..-+..+-||.|||+++.+++.-....++ .+.++...-.|+.--++++..+...+ ++.++....+...........
T Consensus 94 ~g~iaEM~TGEGKTL~atlp~ylnaL~gk---gVhvVTvNdYLA~RDae~m~~l~~~L-GlsvG~~~~~m~~~ek~~aY~ 169 (822)
T COG0653 94 LGDIAEMRTGEGKTLVATLPAYLNALAGK---GVHVVTVNDYLARRDAEWMGPLYEFL-GLSVGVILAGMSPEEKRAAYA 169 (822)
T ss_pred CCceeeeecCCchHHHHHHHHHHHhcCCC---CcEEeeehHHhhhhCHHHHHHHHHHc-CCceeeccCCCChHHHHHHHh
Confidence 34588999999999998877766555544 46777778888888888888877777 999999998886665555444
Q ss_pred cCCCcEEEechHHH-HHHHhcC------CcccCCccEEEEecccccccc---------------ccchhHHHHHHhhCCC
Q 018420 93 NECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLES---------------LDMRRDVQEIFKMTPH 150 (356)
Q Consensus 93 ~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~viiDE~H~~~~~---------------~~~~~~~~~~~~~~~~ 150 (356)
++|.++|...| +.+++.+ ....+.+.+.|+||++.+.=. ...+..+..+...+..
T Consensus 170 ---~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~ 246 (822)
T COG0653 170 ---CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSE 246 (822)
T ss_pred ---cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCchHHHHHHHHHHHhcc
Confidence 48999998776 3333322 222456778888888877500 0011111111111100
Q ss_pred C--------C----------------------------------------------------------------------
Q 018420 151 D--------K---------------------------------------------------------------------- 152 (356)
Q Consensus 151 ~--------~---------------------------------------------------------------------- 152 (356)
. .
T Consensus 247 ~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~g 326 (822)
T COG0653 247 DEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEG 326 (822)
T ss_pred ccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccC
Confidence 0 0
Q ss_pred ---------------------------------------cEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccce
Q 018420 153 ---------------------------------------QVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 193 (356)
Q Consensus 153 ---------------------------------------~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (356)
+..+||+|......++...+..+...+ +......+...
T Consensus 327 Rr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~i---PTnrp~~R~D~ 403 (822)
T COG0653 327 RRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVI---PTNRPIIRLDE 403 (822)
T ss_pred cCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceeec---cCCCcccCCCC
Confidence 122222332222222222221111111 11111112222
Q ss_pred EEEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCC-cE
Q 018420 194 QHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK-RI 270 (356)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~v 270 (356)
..........+...+...+... .+.|+||-+.+++..+.+.+.|.+.+++...++......+-..+ . .+|.. .|
T Consensus 404 ~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Ii--a-~AG~~gaV 480 (822)
T COG0653 404 PDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEII--A-QAGQPGAV 480 (822)
T ss_pred ccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHH--h-hcCCCCcc
Confidence 2233334445555555444333 77899999999999999999999999999999887664443332 2 23433 48
Q ss_pred EEEcCccccCCCCCCCC-----------EEEEecCCCChhhhhhccccccCCCCcceEEEEEcc
Q 018420 271 LVATDLVGRGIDIERVN-----------IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 271 lv~t~~~~~G~d~~~~~-----------~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
-|||+++++|.|+.--. +||-..-..|..--.|..||+||+|-+|.+-.+++-
T Consensus 481 TiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSl 544 (822)
T COG0653 481 TIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 544 (822)
T ss_pred ccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhh
Confidence 89999999999995432 344444455666667999999999999988777764
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.44 E-value=1.3e-13 Score=118.91 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=84.7
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCC--CeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 89 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 89 (356)
.+.+++...+|+|||...+..+.......+. ..++||+||. ++..||..++.++.... ..++..+.+.........
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~~ 102 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLSK 102 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTTS
T ss_pred CCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccc-cccccccccccccccccc
Confidence 4568999999999998766555422222211 1159999998 88899999999988543 567777777651111111
Q ss_pred HHhcCCCcEEEechHHHHHHHh---cCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccc
Q 018420 90 LLKNECPQIVVGTPGRILALAR---DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE 164 (356)
Q Consensus 90 ~~~~~~~~i~v~T~~~l~~~~~---~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 164 (356)
......+++++|++.+..... ...+..-++++||+||+|.+.+ ...........+. ....+++||||-.+
T Consensus 103 -~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~---~~s~~~~~l~~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 103 -NQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN---KDSKRYKALRKLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp -SSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT---TTSHHHHHHHCCC-ECEEEEE-SS-SSS
T ss_pred -cccccceeeeccccccccccccccccccccccceeEEEeccccccc---ccccccccccccc-cceEEeeccccccc
Confidence 112336899999999981000 0111113488899999999843 2333333333344 56689999998654
No 164
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.44 E-value=6e-12 Score=124.41 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=93.1
Q ss_pred eEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcC--CCcEEEEcCccccCCCCCCCCEEEEecCCC
Q 018420 219 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG--NKRILVATDLVGRGIDIERVNIVINYDMPD 296 (356)
Q Consensus 219 ~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~--~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~ 296 (356)
++++|++.......+...+...+.....++|.++...|...++.|.++ ..-+++++.+.+.|+|+..+++||++++.+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 899999999999999999999998899999999999999999999986 344567778999999999999999999999
Q ss_pred ChhhhhhccccccCCCCcceEEEE
Q 018420 297 SADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 297 s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
++....|...|+.|.|+...+.++
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEE
Confidence 999999999999999988776544
No 165
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.38 E-value=8.3e-10 Score=96.74 Aligned_cols=226 Identities=19% Similarity=0.236 Sum_probs=155.3
Q ss_pred CcEEEechHHHHHHHhc------CCcccCCccEEEEeccccccccccchhHHHHHHhhC---C-----------------
Q 018420 96 PQIVVGTPGRILALARD------KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT---P----------------- 149 (356)
Q Consensus 96 ~~i~v~T~~~l~~~~~~------~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~---~----------------- 149 (356)
+||+|++|=.|...+.. ..-.++++.++|+|.+|.+.- .+|. .+..+++.+ +
T Consensus 132 SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M-QNW~-Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 132 SDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM-QNWE-HVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred CCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH-hhHH-HHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 69999999999877664 223378899999999998863 2222 222222111 1
Q ss_pred ----CCCcEEEEEecCccchHHHHHhhcCCCeEE-Ee--ccc----cccccccceEEEEEcCh---hH----HHH----H
Q 018420 150 ----HDKQVMMFSATLSKEIRPVCKKFMQDPMEI-YV--DDE----AKLTLHGLVQHYIKLSE---LE----KNR----K 207 (356)
Q Consensus 150 ----~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~-~~--~~~----~~~~~~~~~~~~~~~~~---~~----~~~----~ 207 (356)
.-.|.|++|+...++...+....+.+.... .. ... .......+.+.+...+- .. ... .
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~ 289 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKK 289 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHH
Confidence 124899999999988887777755443221 11 111 11222333444433221 11 111 1
Q ss_pred HHHHHh-ccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCcc--ccCCCCC
Q 018420 208 LNDLLD-ALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV--GRGIDIE 284 (356)
Q Consensus 208 ~~~~~~-~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~--~~G~d~~ 284 (356)
+...+. ....+++|||+|+.-+-..+..+|++.++....++...++.+-.+.-..|..|+.++|+.|.-+ -+-..+.
T Consensus 290 iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 290 ILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred HHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 222223 4455789999999999999999999999999999999999999999999999999999999753 3566788
Q ss_pred CCCEEEEecCCCChhhhhhccccccCCCC------cceEEEEEcc
Q 018420 285 RVNIVINYDMPDSADTYLHRVGRAGRFGT------KGLAITFVSS 323 (356)
Q Consensus 285 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~------~~~~~~~~~~ 323 (356)
++.+||+|++|..+.-|...+.-...... ...|.++++.
T Consensus 370 Gi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred CCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 89999999999999888777765555432 4678888884
No 166
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.30 E-value=5.6e-10 Score=106.06 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=59.8
Q ss_pred CCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCC--Ccc-------eEEEEEccCCChHHHHHHHHHh
Q 018420 267 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG--TKG-------LAITFVSSASDSDILNQVQARF 337 (356)
Q Consensus 267 ~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~ 337 (356)
..+.+++.+++.+|||.|++-.++.++...|...-.|.+||+.|.. +.| ..+.++......++.+.|.+-+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 6789999999999999999999999998899999999999999942 111 1355666677788888888766
Q ss_pred ccc
Q 018420 338 EVD 340 (356)
Q Consensus 338 ~~~ 340 (356)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 554
No 167
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.14 E-value=1.8e-08 Score=91.69 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=88.2
Q ss_pred CCeEEEEecchhhHHHHHHHHHhCCC------------------CeEEEecCCCHHHHHHHHHHhhcC---CCcEEEEcC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVECNF------------------PSICIHSGMSQEERLTRYKGFKEG---NKRILVATD 275 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~f~~~---~~~vlv~t~ 275 (356)
+.++|+|..+......+.+.|.+..+ ....+.|..+..+|.+++++|+.. .+-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45799999999988888888877422 223456777889999999999864 245789999
Q ss_pred ccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEc
Q 018420 276 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 322 (356)
Q Consensus 276 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~ 322 (356)
+...|+|+=..+.+++++.-|++..-.|.+-|+-|.|+...|+++=.
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 99999999999999999999999999999999999999999987643
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.11 E-value=3.1e-10 Score=96.08 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=48.3
Q ss_pred cHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCC---CeeEEEEcCchHHHHHHHHHHHHH
Q 018420 5 CIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG---QVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 5 ~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
+...+..++++++.+|||+|||++++.+++......+. ..+++|.+++.++.+|...++++.
T Consensus 20 v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 20 LKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45556668999999999999999999988755443222 237999999999999887777654
No 169
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.11 E-value=3.1e-10 Score=96.08 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=48.3
Q ss_pred cHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCC---CeeEEEEcCchHHHHHHHHHHHHH
Q 018420 5 CIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG---QVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 5 ~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~---~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
+...+..++++++.+|||+|||++++.+++......+. ..+++|.+++.++.+|...++++.
T Consensus 20 v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 20 LKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45556668999999999999999999988755443222 237999999999999887777654
No 170
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=99.04 E-value=6.1e-08 Score=89.42 Aligned_cols=74 Identities=20% Similarity=0.263 Sum_probs=57.6
Q ss_pred CCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCC--CCcce----------EEEEEccCCChHHHHHH
Q 018420 266 GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF--GTKGL----------AITFVSSASDSDILNQV 333 (356)
Q Consensus 266 ~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--~~~~~----------~~~~~~~~~~~~~~~~~ 333 (356)
...+.+++.-++.+|||=|++-.++-+....|..+=.|.+||..|. ++.|. -..++.+..+..+++.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999999999999999999999999993 22222 13445556777777777
Q ss_pred HHHhcc
Q 018420 334 QARFEV 339 (356)
Q Consensus 334 ~~~~~~ 339 (356)
.+-++.
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 765443
No 171
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.03 E-value=6.6e-10 Score=102.18 Aligned_cols=308 Identities=20% Similarity=0.204 Sum_probs=177.8
Q ss_pred cHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCC--eeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCc
Q 018420 5 CIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQ--VTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV 82 (356)
Q Consensus 5 ~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~--~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~ 82 (356)
.+.++..+..++|.+.||+|||.-+.-.+++...++... ..+.+--|++-....+++++.+-... .++-..+-.
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e----~~g~tvgy~ 461 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGE----EVGETCGYN 461 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHH----hhccccccc
Confidence 344555577789999999999998888888877766532 24566667776666666665432211 111111111
Q ss_pred chHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 83 NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
..... ........|+.||.+-+++...+.. ..+.++++||.|..-...++...+.+-.........++++|||..
T Consensus 462 vRf~S--a~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatId 536 (1282)
T KOG0921|consen 462 VRFDS--ATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATID 536 (1282)
T ss_pred ccccc--cccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccc
Confidence 11100 0111113789999999887766544 466779999999987656666555554444445566777777754
Q ss_pred cch--------------------HHHHHhhcCCCeEEEeccccccccccce-------------------EEEEE-----
Q 018420 163 KEI--------------------RPVCKKFMQDPMEIYVDDEAKLTLHGLV-------------------QHYIK----- 198 (356)
Q Consensus 163 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~----- 198 (356)
-+. ..+.......+.........+....... ..+..
T Consensus 537 Td~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~a 616 (1282)
T KOG0921|consen 537 TDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTA 616 (1282)
T ss_pred hhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhh
Confidence 321 1111111111111100000000000000 00000
Q ss_pred ---cCh-hHHHHHHHHHHhcc----CCCeEEEEecchhhHHHHHHHHHhC-------CCCeEEEecCCCHHHHHHHHHHh
Q 018420 199 ---LSE-LEKNRKLNDLLDAL----DFNQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRYKGF 263 (356)
Q Consensus 199 ---~~~-~~~~~~~~~~~~~~----~~~~~ivf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f 263 (356)
..+ ......+..++... -.+-+++|.+.......+...+..+ .......|+.+...+++++.+..
T Consensus 617 m~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~ 696 (1282)
T KOG0921|consen 617 MSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPV 696 (1282)
T ss_pred hhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcc
Confidence 000 00111222222211 2356889999998888888887765 23455678888888888888888
Q ss_pred hcCCCcEEEEcCccccCCCCCCCCEEEEecC------------------CCChhhhhhccccccCCCCcceEEEEEc
Q 018420 264 KEGNKRILVATDLVGRGIDIERVNIVINYDM------------------PDSADTYLHRVGRAGRFGTKGLAITFVS 322 (356)
Q Consensus 264 ~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~~~~~~~~~~~~ 322 (356)
..|..+++++|...+.-+-+.+...|++.+. ..|.....|+.||++|. ++|.+..+.+
T Consensus 697 p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 697 PEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred cccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 8888999999988888777766555553331 12566788999999996 5676666655
No 172
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=3.8e-09 Score=92.06 Aligned_cols=321 Identities=17% Similarity=0.219 Sum_probs=186.3
Q ss_pred CccccHhhHhcCCcEEE-EccCCCcc--chHhHHHhhcCc----------------------------CCCCCCeeEEEE
Q 018420 1 MQHECIPQAILGMDVIC-QAKSGMGK--TAVFVLSTLQQT----------------------------EPNPGQVTALVL 49 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li-~~~tGsGK--T~~~~~~~~~~~----------------------------~~~~~~~~vlii 49 (356)
+|++.+..+.+.++++- ....+.|+ +-.|++.+++++ .++-.+++|+|+
T Consensus 220 lQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpkVLiv 299 (698)
T KOG2340|consen 220 LQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPKVLIV 299 (698)
T ss_pred HHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCceEEEE
Confidence 36666666677777653 33334455 344555555431 112235799999
Q ss_pred cCchHHHHHHHHHHHHHhccCCCceEEE---------EEc--------------------CcchH-------HhHHH--H
Q 018420 50 CHTRELAYQICHEFERFSTYLPDIKVAV---------FYG--------------------GVNIK-------IHKDL--L 91 (356)
Q Consensus 50 ~P~~~l~~q~~~~~~~~~~~~~~~~v~~---------~~~--------------------~~~~~-------~~~~~--~ 91 (356)
||+|+.+-.+...+..++.+...-...+ +.| |...+ ...+. +
T Consensus 300 vpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkKtikL 379 (698)
T KOG2340|consen 300 VPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKKTIKL 379 (698)
T ss_pred ecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHHHHHH
Confidence 9999999999888887743321100000 000 00000 00111 1
Q ss_pred hc--CCCcEEEechHHHHHHHhcCCc------ccCCccEEEEeccccccccccchhHHHHHHhhCC---CC---------
Q 018420 92 KN--ECPQIVVGTPGRILALARDKDL------SLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP---HD--------- 151 (356)
Q Consensus 92 ~~--~~~~i~v~T~~~l~~~~~~~~~------~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~---~~--------- 151 (356)
.+ ..++|+||+|=.+..++.+..- .++++.++|||-+|.+.. .+|. .+..++..++ ..
T Consensus 380 ys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~-QNwE-hl~~ifdHLn~~P~k~h~~DfSRV 457 (698)
T KOG2340|consen 380 YSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM-QNWE-HLLHIFDHLNLQPSKQHDVDFSRV 457 (698)
T ss_pred HhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH-hhHH-HHHHHHHHhhcCcccccCCChhhe
Confidence 11 2359999999998877764322 267788899999998875 3433 3333333322 11
Q ss_pred ------------CcEEEEEecCccchHHHHHhhcCCCeEEEeccc---------cccccccceEEE-----EEcChhHHH
Q 018420 152 ------------KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE---------AKLTLHGLVQHY-----IKLSELEKN 205 (356)
Q Consensus 152 ------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-----~~~~~~~~~ 205 (356)
.|.+++|+--.+....+...++.+-........ ......+..+.+ ...+...-.
T Consensus 458 R~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFk 537 (698)
T KOG2340|consen 458 RMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFK 537 (698)
T ss_pred ehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHH
Confidence 145555555444444444443332211111000 001111111111 112222222
Q ss_pred HHHHHHHhcc---CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCcc--ccC
Q 018420 206 RKLNDLLDAL---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV--GRG 280 (356)
Q Consensus 206 ~~~~~~~~~~---~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~--~~G 280 (356)
.....++... ....++|+.|+.-.-..+..++++..+....+|...++..-.+.-..|-.|...+|+.|.-+ -+-
T Consensus 538 yFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR 617 (698)
T KOG2340|consen 538 YFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRR 617 (698)
T ss_pred HHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhh
Confidence 3333343333 23568999999999999999999998888888888777777777788999999999999754 467
Q ss_pred CCCCCCCEEEEecCCCChhhh---hhccccccCCCC----cceEEEEEcc
Q 018420 281 IDIERVNIVINYDMPDSADTY---LHRVGRAGRFGT----KGLAITFVSS 323 (356)
Q Consensus 281 ~d~~~~~~vi~~~~~~s~~~~---~Q~~GR~~R~~~----~~~~~~~~~~ 323 (356)
.++.++..||+|.+|..+.-| +.+.+|..-.|+ ...|.++++.
T Consensus 618 ~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 618 YHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred heecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 788999999999999987765 455566544332 2456677764
No 173
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.90 E-value=5.6e-09 Score=81.17 Aligned_cols=112 Identities=23% Similarity=0.256 Sum_probs=78.0
Q ss_pred HHHhccCCCeEEEEecchhhHHHHHHHHHhCCC--CeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC--ccccCCCCCC
Q 018420 210 DLLDALDFNQVVIFVKSVSRAAELNKLLVECNF--PSICIHSGMSQEERLTRYKGFKEGNKRILVATD--LVGRGIDIER 285 (356)
Q Consensus 210 ~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~--~~~~G~d~~~ 285 (356)
.+++..+ ++++||+++.+.++.+.+.+..... ....+.. +..+...+++.|+.++-.||+++. .+++|+|+|+
T Consensus 3 ~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 3444444 8999999999999999999887642 1222333 356778889999999999999998 9999999997
Q ss_pred --CCEEEEecCCCC------------------------------hhhhhhccccccCCCCcceEEEEEccC
Q 018420 286 --VNIVINYDMPDS------------------------------ADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 286 --~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
+..||+.+.|.. .....|.+||+.|..++..++++.+..
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 778999887741 122359999999988887778887753
No 174
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.89 E-value=2.2e-08 Score=82.62 Aligned_cols=111 Identities=22% Similarity=0.288 Sum_probs=83.7
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcC
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 94 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 94 (356)
-++...||.|||++..+++......+. .|-+++.+..|+..-++++..+...+ |+.++...++...........
T Consensus 93 ~laEm~TGEGKTli~~l~a~~~AL~G~---~V~vvT~NdyLA~RD~~~~~~~y~~L-Glsv~~~~~~~~~~~r~~~Y~-- 166 (266)
T PF07517_consen 93 RLAEMKTGEGKTLIAALPAALNALQGK---GVHVVTSNDYLAKRDAEEMRPFYEFL-GLSVGIITSDMSSEERREAYA-- 166 (266)
T ss_dssp SEEEESTTSHHHHHHHHHHHHHHTTSS----EEEEESSHHHHHHHHHHHHHHHHHT-T--EEEEETTTEHHHHHHHHH--
T ss_pred eeEEecCCCCcHHHHHHHHHHHHHhcC---CcEEEeccHHHhhccHHHHHHHHHHh-hhccccCccccCHHHHHHHHh--
Confidence 499999999999888777666655544 68899999999999999999998888 999999999877655444443
Q ss_pred CCcEEEechHHHHH-HHhcCC------cccCCccEEEEecccccc
Q 018420 95 CPQIVVGTPGRILA-LARDKD------LSLKNVRHFILDECDKML 132 (356)
Q Consensus 95 ~~~i~v~T~~~l~~-~~~~~~------~~~~~~~~viiDE~H~~~ 132 (356)
.+|+++|...|.- ++++.. ...+.++++||||++.+.
T Consensus 167 -~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 167 -ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred -CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 3799999988844 444321 114678999999999886
No 175
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.84 E-value=1.7e-06 Score=80.40 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=67.3
Q ss_pred CeEEEEecchhhHHHHHHHHHhC-------CCCeEEEecCCCHHHHHHHHHHhhcC--------CCcEEEEcCccccCCC
Q 018420 218 NQVVIFVKSVSRAAELNKLLVEC-------NFPSICIHSGMSQEERLTRYKGFKEG--------NKRILVATDLVGRGID 282 (356)
Q Consensus 218 ~~~ivf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~--------~~~vlv~t~~~~~G~d 282 (356)
..+++|+|+....+.+....+.. +.+.. +..--+..+-.+++..|.+. -.-..|+-...++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l-~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKL-VVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCc-eeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 44999999998888775554442 22332 22222444444545555332 2233455588999999
Q ss_pred CCC--CCEEEEecCCC--------------------------------------ChhhhhhccccccCCCCcceEEEEEc
Q 018420 283 IER--VNIVINYDMPD--------------------------------------SADTYLHRVGRAGRFGTKGLAITFVS 322 (356)
Q Consensus 283 ~~~--~~~vi~~~~~~--------------------------------------s~~~~~Q~~GR~~R~~~~~~~~~~~~ 322 (356)
+.+ .+.||..+.|. ..+.+.|.+||+.|..++..++++++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 976 55888888664 12344699999999877777777777
Q ss_pred c
Q 018420 323 S 323 (356)
Q Consensus 323 ~ 323 (356)
.
T Consensus 721 ~ 721 (945)
T KOG1132|consen 721 D 721 (945)
T ss_pred c
Confidence 4
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.83 E-value=1.6e-09 Score=101.45 Aligned_cols=216 Identities=18% Similarity=0.236 Sum_probs=131.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 91 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 91 (356)
..++++-+|||+|||.++.+++.......+.. +++|+.|..+|+..-.+........ +|+.+....|+...+ ....
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~-kvvyIap~kalvker~~Dw~~r~~~-~g~k~ie~tgd~~pd--~~~v 1018 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPGS-KVVYIAPDKALVKERSDDWSKRDEL-PGIKVIELTGDVTPD--VKAV 1018 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCCc-cEEEEcCCchhhcccccchhhhccc-CCceeEeccCccCCC--hhhe
Confidence 45678999999999999988888888777765 8999999999998877777654433 388888888876654 2222
Q ss_pred hcCCCcEEEechHHHHHHHhc--CCcccCCccEEEEeccccccccccchhHHHHH-------HhhCCCCCcEEEEEecCc
Q 018420 92 KNECPQIVVGTPGRILALARD--KDLSLKNVRHFILDECDKMLESLDMRRDVQEI-------FKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 92 ~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~SaT~~ 162 (356)
.. ++++|+||+++....+. ....+++++.+|+||.|.... +..+.+..+ .....+..+.+++|.-+.
T Consensus 1019 ~~--~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~--~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~ 1094 (1230)
T KOG0952|consen 1019 RE--ADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE--DRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALA 1094 (1230)
T ss_pred ec--CceEEcccccccCccccccchhhhccccceeecccccccC--CCcceEEEEeeccccCccccCcchhhhhHhhhhh
Confidence 22 58999999999887773 445578899999999998865 322222222 222333455666655444
Q ss_pred cchHHHHHhhcCCCeEEEeccccccccccceEEEE---EcCh-hHHH-HHHHHHHhccCCCeEEEEecchhhHHHHHHH
Q 018420 163 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI---KLSE-LEKN-RKLNDLLDALDFNQVVIFVKSVSRAAELNKL 236 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~-~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~ 236 (356)
. ..++..++...+..-+.....+.......+.+. .++. ..+. +....+-...+..+++||+.++.+...-+-.
T Consensus 1095 n-a~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~ 1172 (1230)
T KOG0952|consen 1095 N-ANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALD 1172 (1230)
T ss_pred c-cHHHHHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHh
Confidence 3 345555544443311111111111111111111 1111 1222 3333333344678999999987765544433
No 177
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.82 E-value=3.3e-08 Score=92.03 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=89.8
Q ss_pred eEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCC-CcE-EEEcCccccCCCCCCCCEEEEecCCC
Q 018420 219 QVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN-KRI-LVATDLVGRGIDIERVNIVINYDMPD 296 (356)
Q Consensus 219 ~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~v-lv~t~~~~~G~d~~~~~~vi~~~~~~ 296 (356)
++++|+.-...+..+...|...+.....+.|.++...|.+.+..|..+. ..+ +++..+...|+|+-.+.+|+..++-+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8999999999999888888888888888999999999999999998553 334 46779999999999999999999999
Q ss_pred ChhhhhhccccccCCCCcceEEE
Q 018420 297 SADTYLHRVGRAGRFGTKGLAIT 319 (356)
Q Consensus 297 s~~~~~Q~~GR~~R~~~~~~~~~ 319 (356)
++....|.+-|+.|-|+...+.+
T Consensus 621 np~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred ChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999998877754
No 178
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.77 E-value=1.3e-06 Score=76.64 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=67.2
Q ss_pred CCeEEEEecchhhHHHHHHHHHhCCC-------CeEEEecCCCHH---HHHHHHHHhhcCCCcEEEEc--CccccCCCCC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVECNF-------PSICIHSGMSQE---ERLTRYKGFKEGNKRILVAT--DLVGRGIDIE 284 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~---~~~~~~~~f~~~~~~vlv~t--~~~~~G~d~~ 284 (356)
.+.+++|+++.-..+.+.....+.|+ +...+.-....+ .......++.+|.-.||+++ ...++|+|+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 36789999998888888777666543 333332211111 11222335566777788665 7899999998
Q ss_pred CCC--EEEEecCCCC------------------------------hhhhhhccccccCCCCcceEEEEEc
Q 018420 285 RVN--IVINYDMPDS------------------------------ADTYLHRVGRAGRFGTKGLAITFVS 322 (356)
Q Consensus 285 ~~~--~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~~~~~~~~~ 322 (356)
+-. .|+.++.|.- ...-.|..||+.|..++....++-+
T Consensus 610 hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~K~dYg~mI~aD 679 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRGKTDYGLMIFAD 679 (755)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhccccceeeEeee
Confidence 755 8898888761 2223599999999655544445544
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.70 E-value=4.7e-08 Score=81.04 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=47.0
Q ss_pred ccccHhhHhcCCc-EEEEccCCCccchHhHHHhhcCc-----CCCCCCeeEEEEcCchHHHHHHHHHHHH
Q 018420 2 QHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQT-----EPNPGQVTALVLCHTRELAYQICHEFER 65 (356)
Q Consensus 2 Q~~~~~~~~~~~~-~li~~~tGsGKT~~~~~~~~~~~-----~~~~~~~~vlii~P~~~l~~q~~~~~~~ 65 (356)
|.+|+..+++... .+|+||+|+|||.+....+.... .....+.++++++|+...+++..+.+.+
T Consensus 6 Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 6 QREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 8889999998888 89999999999966444333331 1122333899999999999999888877
No 180
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.68 E-value=1e-06 Score=84.17 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=53.6
Q ss_pred CcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCcc
Q 018420 96 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 163 (356)
Q Consensus 96 ~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 163 (356)
..|+++||+.+..-+-.+.++++.+..+||||||++.+... ..-+.+++...++..-+.++|+.|..
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~-eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQ-EAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccccc-HHHHHHHHHHhCCCcceEEecCCCcc
Confidence 38999999999998888999999999999999999987433 33444555555556669999999854
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.62 E-value=5.2e-08 Score=77.14 Aligned_cols=133 Identities=15% Similarity=0.206 Sum_probs=68.6
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE--
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-- 79 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~-- 79 (356)
|..++.++.+.+-+++.+|.|||||+.++.++++.+..+... +++++-|..+..+. + +.+|+-.-.-+.
T Consensus 9 Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~-kiii~Rp~v~~~~~----l----GflpG~~~eK~~p~ 79 (205)
T PF02562_consen 9 QKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYD-KIIITRPPVEAGED----L----GFLPGDLEEKMEPY 79 (205)
T ss_dssp HHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S-EEEEEE-S--TT------------SS---------TT
T ss_pred HHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc-EEEEEecCCCCccc----c----ccCCCCHHHHHHHH
Confidence 788899999888899999999999999998888887775444 78888887653221 1 111211000000
Q ss_pred ------------cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhh
Q 018420 80 ------------GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 147 (356)
Q Consensus 80 ------------~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~ 147 (356)
+... -...+.+ ..|-+.....+. +. .++ -.+||+|||+.+. ...+..++.+
T Consensus 80 ~~p~~d~l~~~~~~~~---~~~~~~~--~~Ie~~~~~~iR-----Gr-t~~-~~~iIvDEaQN~t-----~~~~k~ilTR 142 (205)
T PF02562_consen 80 LRPIYDALEELFGKEK---LEELIQN--GKIEIEPLAFIR-----GR-TFD-NAFIIVDEAQNLT-----PEELKMILTR 142 (205)
T ss_dssp THHHHHHHTTTS-TTC---HHHHHHT--TSEEEEEGGGGT-----T---B--SEEEEE-SGGG-------HHHHHHHHTT
T ss_pred HHHHHHHHHHHhChHh---HHHHhhc--CeEEEEehhhhc-----Cc-ccc-ceEEEEecccCCC-----HHHHHHHHcc
Confidence 1000 0111111 144444433331 11 122 3679999999664 3678888888
Q ss_pred CCCCCcEEEEEec
Q 018420 148 TPHDKQVMMFSAT 160 (356)
Q Consensus 148 ~~~~~~~i~~SaT 160 (356)
...+++++++--.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8888877776554
No 182
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.54 E-value=4.5e-07 Score=80.72 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=80.1
Q ss_pred EEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH---Hhc
Q 018420 17 CQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKN 93 (356)
Q Consensus 17 i~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~ 93 (356)
..++||||||++....++....++.+ ..++.|....+.+.+...+-.-....--+.-.+..++.+.+...-. -.+
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYR--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchh--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccC
Confidence 46899999999987777777776655 5788888888887776654321100000011111112211111000 022
Q ss_pred CCCcEEEechHHHHHHHhcCCcc------cCCccE-EEEecccccccc------------ccchhHHHHHHhhCCCCCcE
Q 018420 94 ECPQIVVGTPGRILALARDKDLS------LKNVRH-FILDECDKMLES------------LDMRRDVQEIFKMTPHDKQV 154 (356)
Q Consensus 94 ~~~~i~v~T~~~l~~~~~~~~~~------~~~~~~-viiDE~H~~~~~------------~~~~~~~~~~~~~~~~~~~~ 154 (356)
..-.|+++|.+.+...+.+...+ +.+..+ ++-||+||+-.. ..|...+....... ++--+
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~n-kd~~~ 158 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQN-KDNLL 158 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcC-CCcee
Confidence 33579999999998876643321 333344 678999999642 11222222222222 33447
Q ss_pred EEEEecCcc
Q 018420 155 MMFSATLSK 163 (356)
Q Consensus 155 i~~SaT~~~ 163 (356)
+..|||.+.
T Consensus 159 lef~at~~k 167 (812)
T COG3421 159 LEFSATIPK 167 (812)
T ss_pred ehhhhcCCc
Confidence 788999874
No 183
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.54 E-value=1.9e-07 Score=74.57 Aligned_cols=118 Identities=17% Similarity=0.232 Sum_probs=68.0
Q ss_pred ccccHhhHhcCC--cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 2 QHECIPQAILGM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
|.+|+..++.++ -.++.+|+|+|||.+ +..+...+...+ .++++++||...+....+.. +...
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~g--~~v~~~apT~~Aa~~L~~~~--------~~~a---- 70 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAAG--KRVIGLAPTNKAAKELREKT--------GIEA---- 70 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHTT----EEEEESSHHHHHHHHHHH--------TS-E----
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhCC--CeEEEECCcHHHHHHHHHhh--------Ccch----
Confidence 788999997543 467899999999976 333444443332 37999999988777755542 2222
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCC----cccCCccEEEEeccccccccccchhHHHHHHhhCCC-CCcE
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD----LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH-DKQV 154 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~----~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (356)
.|...++....... ......+++||||+..+.. ..+..+...... +.++
T Consensus 71 ---------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~-----~~~~~ll~~~~~~~~kl 124 (196)
T PF13604_consen 71 ---------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS-----RQLARLLRLAKKSGAKL 124 (196)
T ss_dssp ---------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH-----HHHHHHHHHS-T-T-EE
T ss_pred ---------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccCH-----HHHHHHHHHHHhcCCEE
Confidence 33333332221111 1145667999999997754 455555555554 5656
Q ss_pred EEEEec
Q 018420 155 MMFSAT 160 (356)
Q Consensus 155 i~~SaT 160 (356)
|++--+
T Consensus 125 ilvGD~ 130 (196)
T PF13604_consen 125 ILVGDP 130 (196)
T ss_dssp EEEE-T
T ss_pred EEECCc
Confidence 665544
No 184
>PF13245 AAA_19: Part of AAA domain
Probab=98.46 E-value=4.9e-07 Score=59.72 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=41.1
Q ss_pred cHhhHhc-CCcEEEEccCCCccchHhHHHhhcCcC--CCCCCeeEEEEcCchHHHHHHHHHH
Q 018420 5 CIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTE--PNPGQVTALVLCHTRELAYQICHEF 63 (356)
Q Consensus 5 ~~~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~--~~~~~~~vlii~P~~~l~~q~~~~~ 63 (356)
++..... +.-++|.+|+|||||...+-.+..... ... +.++++++|++..++++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4553333 444566999999999776655555552 222 338999999999999888877
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.41 E-value=1.5e-06 Score=76.43 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=59.6
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 93 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 93 (356)
-++|.|.+|||||++++..+... .......+++++++..+|.....+.+...... ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--~~-------------------- 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--KL-------------------- 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecchHHHHHHHHHhhhccc--ch--------------------
Confidence 46899999999998865544444 11222227899999999998877776543200 00
Q ss_pred CCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 94 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 94 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
....+..+..+.............+++|||||||++..
T Consensus 60 --~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 --KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 02223344444433322234457889999999999976
No 186
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.38 E-value=4.2e-06 Score=62.70 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCC------CeEEEecCCCHHHHHHHHHHhhcCC-CcEEEEcCccccCCCCCC--CCEEEEecCCCC---
Q 018420 230 AAELNKLLVECNF------PSICIHSGMSQEERLTRYKGFKEGN-KRILVATDLVGRGIDIER--VNIVINYDMPDS--- 297 (356)
Q Consensus 230 ~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~f~~~~-~~vlv~t~~~~~G~d~~~--~~~vi~~~~~~s--- 297 (356)
++.+...+...+. ....+..+.+..+...+++.|+... ..||+++..+++|+|+|+ +..||+.+.|..
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 4445555555443 2233444455556788888898654 379999988999999997 568888886531
Q ss_pred ----------------------------hhhhhhccccccCCCCcceEEEEEcc
Q 018420 298 ----------------------------ADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 298 ----------------------------~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
...+.|.+||+.|...+..++++.+.
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 22346999999998777777777764
No 187
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.38 E-value=1.7e-06 Score=78.07 Aligned_cols=72 Identities=15% Similarity=0.170 Sum_probs=56.5
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
|..|+.+++...-.||.+|+|+|||.+....+...... ... +|++++|+.--++|+++.+.+. +++|..+.+
T Consensus 415 Q~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~-~VLvcApSNiAVDqLaeKIh~t-----gLKVvRl~a 486 (935)
T KOG1802|consen 415 QSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-HAG-PVLVCAPSNIAVDQLAEKIHKT-----GLKVVRLCA 486 (935)
T ss_pred HHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh-cCC-ceEEEcccchhHHHHHHHHHhc-----CceEeeeeh
Confidence 88999999999999999999999997754444444433 233 7999999999999999988764 566666554
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.36 E-value=2e-06 Score=79.82 Aligned_cols=139 Identities=15% Similarity=0.215 Sum_probs=83.2
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHH--HhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVL--STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~--~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|+.|+...+.++-.+|.|++|+|||++... ..+..........++.+..||---+..+.+.+......+ ...
T Consensus 149 ~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l-~~~---- 223 (586)
T TIGR01447 149 WQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL-AAA---- 223 (586)
T ss_pred HHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc-ccc----
Confidence 3788998989998999999999999976432 222222111112379999999877777766665433222 100
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc------CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCC
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARD------KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 152 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 152 (356)
...... ..+-..|..+++..... .......+++|||||+-.+.. ..+..+....++.+
T Consensus 224 ---------~~~~~~--~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~-----~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 ---------EALIAA--LPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL-----PLMAKLLKALPPNT 287 (586)
T ss_pred ---------hhhhhc--cccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH-----HHHHHHHHhcCCCC
Confidence 000000 01224555555543221 111223578999999997643 46777777788888
Q ss_pred cEEEEEec
Q 018420 153 QVMMFSAT 160 (356)
Q Consensus 153 ~~i~~SaT 160 (356)
++|++.-.
T Consensus 288 rlIlvGD~ 295 (586)
T TIGR01447 288 KLILLGDK 295 (586)
T ss_pred EEEEECCh
Confidence 77766544
No 189
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.36 E-value=8.3e-07 Score=79.30 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=47.5
Q ss_pred ccccHhhHhcCCc-EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHH
Q 018420 2 QHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 63 (356)
Q Consensus 2 Q~~~~~~~~~~~~-~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~ 63 (356)
|++|+....+.++ .++.||+|+|||.+....+.+...+++ +|++..|+..-++...+++
T Consensus 190 Qk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k---~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 190 QKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKK---RVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred HHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCC---eEEEEcCchHHHHHHHHHh
Confidence 7778887777755 578999999999886666666666554 8999999999999988854
No 190
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.35 E-value=1.4e-06 Score=81.08 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=84.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHH--HhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVL--STLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~--~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|++|+...+.++-.+|.+++|+|||.+... ..+...... ...++.+..||.--+..+.+.+....... +..
T Consensus 156 ~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~-~~~~i~l~APTgkAA~rL~e~~~~~~~~~-~~~---- 229 (615)
T PRK10875 156 WQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADG-ERCRIRLAAPTGKAAARLTESLGKALRQL-PLT---- 229 (615)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCC-CCcEEEEECCcHHHHHHHHHHHHhhhhcc-ccc----
Confidence 4888998888888899999999999976422 222222211 22378899999888887777665433222 100
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc------CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCC
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARD------KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 152 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~------~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 152 (356)
+.... . ...-..|..+++..... ...+.-..++|||||+..+. ...+..++...++.+
T Consensus 230 ------~~~~~---~--~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd-----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 ------DEQKK---R--IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD-----LPMMARLIDALPPHA 293 (615)
T ss_pred ------hhhhh---c--CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc-----HHHHHHHHHhcccCC
Confidence 00000 0 01123455555443211 11122356899999999663 356777778888888
Q ss_pred cEEEEEec
Q 018420 153 QVMMFSAT 160 (356)
Q Consensus 153 ~~i~~SaT 160 (356)
++|++.-.
T Consensus 294 rlIlvGD~ 301 (615)
T PRK10875 294 RVIFLGDR 301 (615)
T ss_pred EEEEecch
Confidence 88887655
No 191
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.33 E-value=4.2e-06 Score=69.55 Aligned_cols=142 Identities=16% Similarity=0.135 Sum_probs=90.1
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 92 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 92 (356)
.-.++=-.||.||--.....+++....+.. +.+|++.+..|.....+.++..... .+.+..+..- +.. + ..
T Consensus 63 ~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~--r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~---~~~-~-~~ 133 (303)
T PF13872_consen 63 AGFFLGDGTGVGKGRQIAGIILENWLRGRK--RAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKF---KYG-D-II 133 (303)
T ss_pred cEEEeccCCCcCccchhHHHHHHHHHcCCC--ceEEEECChhhhhHHHHHHHHhCCC--cccceechhh---ccC-c-CC
Confidence 346888899999998777777777666543 6899999999999988888766543 2233322221 000 0 01
Q ss_pred cCCCcEEEechHHHHHHHhcCCc---c---------cCCccEEEEecccccccccc-------chhHHHHHHhhCCCCCc
Q 018420 93 NECPQIVVGTPGRILALARDKDL---S---------LKNVRHFILDECDKMLESLD-------MRRDVQEIFKMTPHDKQ 153 (356)
Q Consensus 93 ~~~~~i~v~T~~~l~~~~~~~~~---~---------~~~~~~viiDE~H~~~~~~~-------~~~~~~~~~~~~~~~~~ 153 (356)
.-...|+++|+..|......... . -..-.+||+||||...+... ......++...+ ++.+
T Consensus 134 ~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~AR 212 (303)
T PF13872_consen 134 RLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNAR 212 (303)
T ss_pred CCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCc
Confidence 11247999999999876532110 0 11234799999999976422 112334444555 4566
Q ss_pred EEEEEecCccc
Q 018420 154 VMMFSATLSKE 164 (356)
Q Consensus 154 ~i~~SaT~~~~ 164 (356)
++.+|||.-.+
T Consensus 213 vvY~SATgase 223 (303)
T PF13872_consen 213 VVYASATGASE 223 (303)
T ss_pred EEEecccccCC
Confidence 99999997654
No 192
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.33 E-value=4.1e-06 Score=62.88 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhCCC---CeEEEecCCCHHHHHHHHHHhhcCCC---cEEEEcCc--cccCCCCCC--CCEEEEecCCCC-
Q 018420 229 RAAELNKLLVECNF---PSICIHSGMSQEERLTRYKGFKEGNK---RILVATDL--VGRGIDIER--VNIVINYDMPDS- 297 (356)
Q Consensus 229 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~f~~~~~---~vlv~t~~--~~~G~d~~~--~~~vi~~~~~~s- 297 (356)
.++.+++.+.+.+. ....+..+....+..++++.|+...- .||+++.- ++||+|+|+ +..||+.+.|..
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34556666665543 12223323333344677888876543 59998876 999999998 678988886631
Q ss_pred ------------------------------hhhhhhccccccCCCCcceEEEEEcc
Q 018420 298 ------------------------------ADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 298 ------------------------------~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
...+.|.+||+-|...+..++++.+.
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 12336999999998877777777764
No 193
>PRK10536 hypothetical protein; Provisional
Probab=98.26 E-value=6.1e-06 Score=67.39 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=38.0
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
|...+..+.++..+++.||+|+|||+.+...++..+..+. -.++++.-|..+
T Consensus 64 Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~-~~kIiI~RP~v~ 115 (262)
T PRK10536 64 QAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKD-VDRIIVTRPVLQ 115 (262)
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC-eeEEEEeCCCCC
Confidence 5667777777888899999999999888777776554333 336677667654
No 194
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.25 E-value=2.3e-06 Score=78.63 Aligned_cols=141 Identities=17% Similarity=0.199 Sum_probs=81.5
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcC
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 94 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 94 (356)
++|=...|.||--+....+++...++.+ +.+|++-+..|.-.-.+.++..... ++.|..+.--.--+...+...+.
T Consensus 292 fLiGDGAGVGKGRTvAgiIfeNyLkGRK--rAlW~SVSsDLKfDAERDL~DigA~--~I~V~alnK~KYakIss~en~n~ 367 (1300)
T KOG1513|consen 292 FLIGDGAGVGKGRTVAGIIFENYLKGRK--RALWFSVSSDLKFDAERDLRDIGAT--GIAVHALNKFKYAKISSKENTNT 367 (1300)
T ss_pred eeeccCcccCCCceeEEEEehhhhcccc--eeEEEEeccccccchhhchhhcCCC--CccceehhhcccccccccccCCc
Confidence 4666666666654444445554444433 7899999888887776767655432 55555443211111111111111
Q ss_pred CCcEEEechHHHHHHHhcCC------------cccCC-ccEEEEecccccccc--------ccchhHHHHHHhhCCCCCc
Q 018420 95 CPQIVVGTPGRILALARDKD------------LSLKN-VRHFILDECDKMLES--------LDMRRDVQEIFKMTPHDKQ 153 (356)
Q Consensus 95 ~~~i~v~T~~~l~~~~~~~~------------~~~~~-~~~viiDE~H~~~~~--------~~~~~~~~~~~~~~~~~~~ 153 (356)
.-.|+++|+..|........ +.-.+ -++||+||||...+. ......+..+.+.++ +.+
T Consensus 368 krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~AR 446 (1300)
T KOG1513|consen 368 KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NAR 446 (1300)
T ss_pred cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-Cce
Confidence 23799999998866444211 00111 257999999998642 223455666666675 567
Q ss_pred EEEEEec
Q 018420 154 VMMFSAT 160 (356)
Q Consensus 154 ~i~~SaT 160 (356)
++.-|||
T Consensus 447 VVYASAT 453 (1300)
T KOG1513|consen 447 VVYASAT 453 (1300)
T ss_pred EEEeecc
Confidence 9999999
No 195
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.22 E-value=5.1e-06 Score=79.46 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=71.6
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|++|+..+..++-++|.+++|+|||.+. -.++..+.......+++++.||-.-+..+.+. . +....
T Consensus 328 Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~----~----g~~a~----- 393 (720)
T TIGR01448 328 QKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEV----T----GLTAS----- 393 (720)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHh----c----CCccc-----
Confidence 7889988888888999999999999763 33333333222113688889997666544322 1 21111
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhc-----CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEE
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARD-----KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMM 156 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-----~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~ 156 (356)
|..+++..... ........++|||||++.+.. ..+..++...+..+++|+
T Consensus 394 --------------------Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~-----~~~~~Ll~~~~~~~rlil 448 (720)
T TIGR01448 394 --------------------TIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT-----WLALSLLAALPDHARLLL 448 (720)
T ss_pred --------------------cHHHHhhccCCccchhhhhccccCCEEEEeccccCCH-----HHHHHHHHhCCCCCEEEE
Confidence 11122111000 001123568899999998743 355666667777787777
Q ss_pred EEec
Q 018420 157 FSAT 160 (356)
Q Consensus 157 ~SaT 160 (356)
+--+
T Consensus 449 vGD~ 452 (720)
T TIGR01448 449 VGDT 452 (720)
T ss_pred ECcc
Confidence 6555
No 196
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.08 E-value=2.2e-05 Score=62.93 Aligned_cols=127 Identities=22% Similarity=0.224 Sum_probs=75.1
Q ss_pred ccccHhhHhc---CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 2 QHECIPQAIL---GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 2 Q~~~~~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
|.+....+.+ +++.+..+-+|.|||.+.+ +++.....++.. -+.++|| ++|.+|..+.++...+..-+-++..+
T Consensus 28 Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~-Pmla~~LAdg~~-LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~l 104 (229)
T PF12340_consen 28 QVEIAREMISPPSGKNSVMQLNMGEGKTSVIV-PMLALALADGSR-LVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHL 104 (229)
T ss_pred HHHHHHHHhCCCCCCCeEeeecccCCccchHH-HHHHHHHcCCCc-EEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEe
Confidence 4455555554 5789999999999998854 444333333333 5778888 57999999888865554434444433
Q ss_pred EcCcchH---HhH--------HHHhcCCCcEEEechHHHHHHHhc-------CCc-----------ccCCccEEEEeccc
Q 018420 79 YGGVNIK---IHK--------DLLKNECPQIVVGTPGRILALARD-------KDL-----------SLKNVRHFILDECD 129 (356)
Q Consensus 79 ~~~~~~~---~~~--------~~~~~~~~~i~v~T~~~l~~~~~~-------~~~-----------~~~~~~~viiDE~H 129 (356)
.=..... ... +...+ ..|+++||+.++++.-. +.. .++....=|+||+|
T Consensus 105 pFsR~~~~~~~~~~~~~~l~~~~~~~--~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDEsD 182 (229)
T PF12340_consen 105 PFSRSTPLTPETLEKIRQLLEECMRS--GGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDESD 182 (229)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHc--CCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeECch
Confidence 2211111 111 11222 37999999998764321 111 02223346899999
Q ss_pred cccc
Q 018420 130 KMLE 133 (356)
Q Consensus 130 ~~~~ 133 (356)
....
T Consensus 183 e~L~ 186 (229)
T PF12340_consen 183 EILS 186 (229)
T ss_pred hccC
Confidence 7754
No 197
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.92 E-value=9.2e-06 Score=70.54 Aligned_cols=118 Identities=15% Similarity=0.015 Sum_probs=69.9
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
|.+++.. ..+.++|.|++|||||.+.+..+...+... -...+++++++|+..+..+.+++...........
T Consensus 5 Q~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~------ 76 (315)
T PF00580_consen 5 QRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQES------ 76 (315)
T ss_dssp HHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC------
T ss_pred HHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccc------
Confidence 5555555 577899999999999998776665554443 2334899999999999999999988654421000
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccC--CccEEEEeccc
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLK--NVRHFILDECD 129 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~--~~~~viiDE~H 129 (356)
...............+.|+|.+.|...+-+...... .-++-++|+..
T Consensus 77 --~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 77 --SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp --TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred --cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000011111111237889999988664332211111 12345666666
No 198
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.90 E-value=2.1e-05 Score=58.59 Aligned_cols=120 Identities=10% Similarity=0.086 Sum_probs=53.7
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCC---CCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHh
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEP---NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH 87 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~---~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 87 (356)
+++.++|.||+|+|||......+...... ......+.+-+|...-...+...+....+.... . . .....-
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~-----~-~~~~~l 75 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-S-----R-QTSDEL 75 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-S-----T-S-HHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-c-----c-CCHHHH
Confidence 35678999999999997644333322110 001213344444333244455555444433211 1 0 000000
Q ss_pred HHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 88 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 88 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
. +.+...+.+... .+||+||+|++. ....+..+........-.+.+++++
T Consensus 76 ~---------------~~~~~~l~~~~~-----~~lviDe~~~l~----~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 76 R---------------SLLIDALDRRRV-----VLLVIDEADHLF----SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp H---------------HHHHHHHHHCTE-----EEEEEETTHHHH----THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred H---------------HHHHHHHHhcCC-----eEEEEeChHhcC----CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 0 123333332222 579999999973 1334444444434444466667775
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.84 E-value=2.5e-05 Score=62.19 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=24.6
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 51 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P 51 (356)
.-.++.+|+|+|||..++-.+......+. +++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~---~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGM---KVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCC---eEEEEec
Confidence 34688999999999776555554443322 6777766
No 200
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.83 E-value=7.8e-05 Score=71.75 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=66.3
Q ss_pred ccccHhhHhcC-CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 2 QHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
|++|+..+..+ +-++|.+++|+|||.+. -.+...+... +.+++++.|+--.+..+.+. . +....
T Consensus 357 Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~--g~~V~~~ApTg~Aa~~L~~~----~----g~~a~---- 421 (744)
T TIGR02768 357 QYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA--GYRVIGAALSGKAAEGLQAE----S----GIESR---- 421 (744)
T ss_pred HHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC--CCeEEEEeCcHHHHHHHHhc----c----CCcee----
Confidence 78899988874 56789999999999663 3333333222 22789999986544443221 1 22221
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHh-hCCCCCcEEEEE
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK-MTPHDKQVMMFS 158 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~-~~~~~~~~i~~S 158 (356)
|..++..........+...++|||||+..+.. ..+..++. ....+.++|++.
T Consensus 422 ---------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~-----~~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 422 ---------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS-----RQMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred ---------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH-----HHHHHHHHHHHhcCCEEEEEC
Confidence 22222211122223346788999999997754 22333443 223456666655
No 201
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.83 E-value=6e-05 Score=62.53 Aligned_cols=65 Identities=23% Similarity=0.412 Sum_probs=53.3
Q ss_pred HHHHHhhcCCCcEEEEcCccccCCCCCC--------CCEEEEecCCCChhhhhhccccccCCCCc-ceEEEEEc
Q 018420 258 TRYKGFKEGNKRILVATDLVGRGIDIER--------VNIVINYDMPDSADTYLHRVGRAGRFGTK-GLAITFVS 322 (356)
Q Consensus 258 ~~~~~f~~~~~~vlv~t~~~~~G~d~~~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~-~~~~~~~~ 322 (356)
...+.|.+|+.+|+|-+++.++|+.++. -.+-|.+.+|||++..+|.+||+.|.|+. .+.+.++.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 4456899999999999999999999973 23667789999999999999999999884 44454444
No 202
>PRK06526 transposase; Provisional
Probab=97.82 E-value=3.8e-05 Score=63.84 Aligned_cols=47 Identities=9% Similarity=-0.007 Sum_probs=27.5
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccc
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE 164 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 164 (356)
.+.+++|+||+|...........+..+.........+|+.|..+...
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~ 204 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGR 204 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHH
Confidence 45688999999977432222333444443322234577777776554
No 203
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.0002 Score=63.04 Aligned_cols=121 Identities=13% Similarity=0.132 Sum_probs=63.9
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCC-CCCeeEEEEcC-c-hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCH-T-RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 89 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~vlii~P-~-~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 89 (356)
+.+++.+|||+|||++....+....... ..+.+|.++.- + +.-+. ++++.+.... ++++...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~l-gvpv~~~----------- 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAK---KQIQTYGDIM-GIPVKAI----------- 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHH---HHHHHHhhcC-CcceEee-----------
Confidence 4678999999999988654444332211 11224544442 2 22222 2244444332 4443221
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCC-CcEEEEEecCcc
Q 018420 90 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD-KQVMMFSATLSK 163 (356)
Q Consensus 90 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~-~~~i~~SaT~~~ 163 (356)
-+++.+...+.. ..+.++|+||++.+..........+.++.....+. ..++.+|||...
T Consensus 240 -----------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~ 299 (388)
T PRK12723 240 -----------ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT 299 (388)
T ss_pred -----------CcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH
Confidence 123334333322 35678999999998743221234555555544433 457889999764
No 204
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.76 E-value=0.00032 Score=64.17 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=77.6
Q ss_pred HHhccCCCeEEEEecchhhHHHHHHHHHhCC-------CCeEEEecCCCHHHHHHHHHHh----hcCCCcEEEEc--Ccc
Q 018420 211 LLDALDFNQVVIFVKSVSRAAELNKLLVECN-------FPSICIHSGMSQEERLTRYKGF----KEGNKRILVAT--DLV 277 (356)
Q Consensus 211 ~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~f----~~~~~~vlv~t--~~~ 277 (356)
++...+ +.+++|+|+.+....+.+.+...| .+.+++-...+ -.++++.+ ..|.=.+|+|. .-+
T Consensus 624 L~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKl 699 (821)
T KOG1133|consen 624 LSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKL 699 (821)
T ss_pred HHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 334445 789999999999999998888643 34555554444 23334434 34554678777 789
Q ss_pred ccCCCCCC--CCEEEEecCCCC--------------------------------hhhhhhccccccCCCCcceEEEEEcc
Q 018420 278 GRGIDIER--VNIVINYDMPDS--------------------------------ADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 278 ~~G~d~~~--~~~vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
++|+|+.+ +..|+..+.|.. .....|.+|||.|.-++..++++++.
T Consensus 700 SEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 700 SEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred ccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 99999987 778888886641 11235999999998888889988884
No 205
>PRK14974 cell division protein FtsY; Provisional
Probab=97.76 E-value=0.0003 Score=60.77 Aligned_cols=131 Identities=15% Similarity=0.233 Sum_probs=71.2
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCc---hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT---RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 89 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~---~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 89 (356)
.-+++.+++|+|||++....+.. +.... . +++++... ....+|+......+ ++.+.....+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~-l~~~g-~-~V~li~~Dt~R~~a~eqL~~~a~~l-----gv~v~~~~~g~d------ 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYY-LKKNG-F-SVVIAAGDTFRAGAIEQLEEHAERL-----GVKVIKHKYGAD------ 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH-HHHcC-C-eEEEecCCcCcHHHHHHHHHHHHHc-----CCceecccCCCC------
Confidence 34678999999999875444332 22221 1 56555543 34455554433332 443332111111
Q ss_pred HHhcCCCcEEEechHH-HHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccchHHH
Q 018420 90 LLKNECPQIVVGTPGR-ILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV 168 (356)
Q Consensus 90 ~~~~~~~~i~v~T~~~-l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 168 (356)
|.. +...+... ...+.++|+||.+++..........+..+.....+...++.++||...+....
T Consensus 207 -------------p~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~ 271 (336)
T PRK14974 207 -------------PAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ 271 (336)
T ss_pred -------------HHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH
Confidence 111 11111110 11356789999999886545555666777666667777888899877654444
Q ss_pred HHhh
Q 018420 169 CKKF 172 (356)
Q Consensus 169 ~~~~ 172 (356)
+..+
T Consensus 272 a~~f 275 (336)
T PRK14974 272 AREF 275 (336)
T ss_pred HHHH
Confidence 4443
No 206
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.75 E-value=8.8e-05 Score=72.07 Aligned_cols=147 Identities=17% Similarity=0.147 Sum_probs=92.7
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC---------------CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEE
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---------------PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---------------~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~ 76 (356)
|+.+++.-..|.|||...+...+....+. ....-++||+|. ++..||..++...... ++.+.
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~lKv~ 450 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LLKVL 450 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cceEE
Confidence 67788889999999977665554332211 112368999995 8999999999887654 56888
Q ss_pred EEEcCcchHHhH-HHHhcCCCcEEEechHHHHHHHhcCCcc--------------cCC--cc----EEEEeccccccccc
Q 018420 77 VFYGGVNIKIHK-DLLKNECPQIVVGTPGRILALARDKDLS--------------LKN--VR----HFILDECDKMLESL 135 (356)
Q Consensus 77 ~~~~~~~~~~~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~--------------~~~--~~----~viiDE~H~~~~~~ 135 (356)
.+.|-.+..... ..+.+ .||++||++.+...+.+.... .++ .. -|++|||+......
T Consensus 451 ~Y~Girk~~~~~~~el~~--yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQ--YDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS 528 (1394)
T ss_pred EEechhhhcccCchhhhc--cCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH
Confidence 888854432221 22222 599999999997755432110 000 01 28999999885533
Q ss_pred cchhHHHHHHhhCCCCCcEEEEEecCccchHH
Q 018420 136 DMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP 167 (356)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 167 (356)
....++...++ .....+.|+||-..+..
T Consensus 529 ---S~~a~M~~rL~-~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 529 ---SAAAEMVRRLH-AINRWCVTGTPIQKIDD 556 (1394)
T ss_pred ---HHHHHHHHHhh-hhceeeecCCchhhhhh
Confidence 33333333332 23488999998665443
No 207
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.74 E-value=0.00044 Score=60.09 Aligned_cols=137 Identities=12% Similarity=0.218 Sum_probs=79.3
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 90 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (356)
+++.+.++||||.|||++..-.+.......++. +|=+|.--..-. --.++++.+...+ ++++..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~-kVaiITtDtYRI-GA~EQLk~Ya~im-~vp~~v------------- 265 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKK-KVAIITTDTYRI-GAVEQLKTYADIM-GVPLEV------------- 265 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCc-ceEEEEeccchh-hHHHHHHHHHHHh-CCceEE-------------
Confidence 366788999999999988776666655222222 344443221111 1234455555444 554444
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCcc-chHHHH
Q 018420 91 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPVC 169 (356)
Q Consensus 91 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~ 169 (356)
+-+|.-|...+. .++..++|.||=+-+-..+......+.++.....+..-.+.+|||... ++...+
T Consensus 266 ---------v~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 266 ---------VYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred ---------ecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 334444443322 345568899998876544344456677777766556668888999764 455555
Q ss_pred HhhcCCC
Q 018420 170 KKFMQDP 176 (356)
Q Consensus 170 ~~~~~~~ 176 (356)
..+..-|
T Consensus 333 ~~f~~~~ 339 (407)
T COG1419 333 KQFSLFP 339 (407)
T ss_pred HHhccCC
Confidence 5554433
No 208
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.68 E-value=0.00012 Score=69.31 Aligned_cols=121 Identities=18% Similarity=0.150 Sum_probs=72.6
Q ss_pred ccccHhhHhcCCc-EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 2 QHECIPQAILGMD-VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~~~~~~-~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
|++|+-..+..++ .+|.|-+|+|||.+....+--....++ +|++.+=|.+-++...-.++.+ ++.+..+-.
T Consensus 674 Qr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gk---kVLLtsyThsAVDNILiKL~~~-----~i~~lRLG~ 745 (1100)
T KOG1805|consen 674 QRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGK---KVLLTSYTHSAVDNILIKLKGF-----GIYILRLGS 745 (1100)
T ss_pred HHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCC---eEEEEehhhHHHHHHHHHHhcc-----CcceeecCC
Confidence 7777777776655 689999999999876554444444443 7898888888777775555443 333333333
Q ss_pred CcchHHhHHHHh----------------cCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc
Q 018420 81 GVNIKIHKDLLK----------------NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES 134 (356)
Q Consensus 81 ~~~~~~~~~~~~----------------~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~ 134 (356)
+.......+... -..+.|+.||=-.+-. .-+..+.||++|||||-.+.-+
T Consensus 746 ~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~----plf~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 746 EEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH----PLFVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred ccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc----hhhhccccCEEEEccccccccc
Confidence 332222222111 1224566665433322 2233566999999999988643
No 209
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.67 E-value=5.6e-06 Score=76.67 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=55.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhc---CCCcEEEEcCccccC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKE---GNKRILVATDLVGRG 280 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~---~~~~vlv~t~~~~~G 280 (356)
.++++++|..-.+....+..++...+ ....++|..+...|...++.|+. .....|++|.+.+.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 56899999999999999999999888 88889999999999999999984 356688999887665
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.66 E-value=0.00029 Score=56.17 Aligned_cols=124 Identities=12% Similarity=0.169 Sum_probs=68.7
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC---chHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH---TRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 90 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P---~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (356)
-+++++|||+|||++..-.+...... +. ++.+++. +..-.+| ++.+.... ++++.......+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~--~v~lis~D~~R~ga~eQ----L~~~a~~l-~vp~~~~~~~~~------- 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GK--KVALISADTYRIGAVEQ----LKTYAEIL-GVPFYVARTESD------- 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T----EEEEEESTSSTHHHHH----HHHHHHHH-TEEEEESSTTSC-------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cc--cceeecCCCCCccHHHH----HHHHHHHh-ccccchhhcchh-------
Confidence 46789999999998876655555444 22 5555553 2233333 33333322 544443221111
Q ss_pred HhcCCCcEEEechHH-HHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccchH
Q 018420 91 LKNECPQIVVGTPGR-ILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 166 (356)
Q Consensus 91 ~~~~~~~i~v~T~~~-l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 166 (356)
|.. +...+.. ...++.++|+||-+.+..........+..+.....+....+.++||......
T Consensus 68 ------------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 68 ------------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ------------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ------------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 111 1111111 1224578899999987654445556777777777666678899999876543
No 211
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.66 E-value=0.00017 Score=70.60 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=68.8
Q ss_pred ccccHhhHhcCC-cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 2 QHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~~~~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
|.+|+..+..++ -++|.+++|+|||++ +-.+...+... +.+|+.+.||--.+..+.+ -. ++..
T Consensus 351 Qr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e----~t----Gi~a----- 414 (988)
T PRK13889 351 QADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENLEG----GS----GIAS----- 414 (988)
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHHhh----cc----Ccch-----
Confidence 788999998865 468999999999976 33444333322 2268899998654443321 11 2211
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhh-CCCCCcEEEEEe
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSA 159 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~-~~~~~~~i~~Sa 159 (356)
.|..+|+.-...+...+...++|||||+..+.. ..+..++.. ...++++|++.-
T Consensus 415 --------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~-----~~m~~LL~~a~~~garvVLVGD 469 (988)
T PRK13889 415 --------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT-----RQLERVLSHAADAGAKVVLVGD 469 (988)
T ss_pred --------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH-----HHHHHHHHhhhhCCCEEEEECC
Confidence 122333221222223355678999999997744 244444443 245676777665
Q ss_pred c
Q 018420 160 T 160 (356)
Q Consensus 160 T 160 (356)
+
T Consensus 470 ~ 470 (988)
T PRK13889 470 P 470 (988)
T ss_pred H
Confidence 5
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.65 E-value=0.00024 Score=53.47 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 55 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l 55 (356)
+..+++.+|+|+|||...... +..+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccCCCC--CCEEEECCEEcc
Confidence 567899999999999775433 33333222 146777776543
No 213
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.65 E-value=0.00038 Score=52.75 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=18.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQT 37 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~ 37 (356)
++.+++.||+|+|||... ..+...+
T Consensus 19 ~~~v~i~G~~G~GKT~l~-~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA-RAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHh
Confidence 567999999999999653 3343333
No 214
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.59 E-value=8.4e-05 Score=62.98 Aligned_cols=137 Identities=15% Similarity=0.173 Sum_probs=77.0
Q ss_pred ccccHhhHhcC--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce---EE
Q 018420 2 QHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK---VA 76 (356)
Q Consensus 2 Q~~~~~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~---v~ 76 (356)
|.-|+..++.. +-+.+.++.|||||+.++.+.+.+....+.-.++++.=|+..+.+.. +.+||.. ..
T Consensus 233 Q~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dI--------GfLPG~eEeKm~ 304 (436)
T COG1875 233 QRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDI--------GFLPGTEEEKMG 304 (436)
T ss_pred HHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccccc--------CcCCCchhhhcc
Confidence 55567777764 34678999999999998888888876666555788877877655332 2222211 00
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCC----------ccEEEEeccccccccccchhHHHHHHh
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKN----------VRHFILDECDKMLESLDMRRDVQEIFK 146 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~----------~~~viiDE~H~~~~~~~~~~~~~~~~~ 146 (356)
-|.+. .....+.+.+. -=++.+.+-..+.+..+.+.. -.++|||||+.+. ...++.+..
T Consensus 305 PWmq~--i~DnLE~L~~~----~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT-----pheikTilt 373 (436)
T COG1875 305 PWMQA--IFDNLEVLFSP----NEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT-----PHELKTILT 373 (436)
T ss_pred chHHH--HHhHHHHHhcc----cccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC-----HHHHHHHHH
Confidence 01100 00001111111 011233444444443333222 2469999999764 367888888
Q ss_pred hCCCCCcEEEE
Q 018420 147 MTPHDKQVMMF 157 (356)
Q Consensus 147 ~~~~~~~~i~~ 157 (356)
...++.+++++
T Consensus 374 R~G~GsKIVl~ 384 (436)
T COG1875 374 RAGEGSKIVLT 384 (436)
T ss_pred hccCCCEEEEc
Confidence 88887766554
No 215
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.56 E-value=0.00035 Score=69.05 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=68.8
Q ss_pred ccccHhhHhc-CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 2 QHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
|.+|+..+.. ++-.+|.|+.|+|||++ +-.+...+.... .+|+.+.|+---+..+.+ .. ++...+
T Consensus 386 Q~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~G--~~V~g~ApTgkAA~~L~e----~~----Gi~a~T--- 451 (1102)
T PRK13826 386 QKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAAG--YRVVGGALAGKAAEGLEK----EA----GIQSRT--- 451 (1102)
T ss_pred HHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHcC--CeEEEEcCcHHHHHHHHH----hh----CCCeee---
Confidence 7888888865 45578999999999976 344444333222 268889998655544322 11 333222
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCC-CCCcEEEEEe
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSA 159 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa 159 (356)
...|+.....+...+..-++|||||+..+.. ..+..++.... .++++|++.-
T Consensus 452 ----------------------Ias~ll~~~~~~~~l~~~~vlVIDEAsMv~~-----~~m~~Ll~~~~~~garvVLVGD 504 (1102)
T PRK13826 452 ----------------------LSSWELRWNQGRDQLDNKTVFVLDEAGMVAS-----RQMALFVEAVTRAGAKLVLVGD 504 (1102)
T ss_pred ----------------------HHHHHhhhccCccCCCCCcEEEEECcccCCH-----HHHHHHHHHHHhcCCEEEEECC
Confidence 2222111112223456677899999997744 34444444443 4666777665
Q ss_pred c
Q 018420 160 T 160 (356)
Q Consensus 160 T 160 (356)
+
T Consensus 505 ~ 505 (1102)
T PRK13826 505 P 505 (1102)
T ss_pred H
Confidence 5
No 216
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00036 Score=60.94 Aligned_cols=125 Identities=12% Similarity=0.125 Sum_probs=62.8
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 90 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (356)
++..+++.+|||+|||++....+.......... ++.++... ....--.++++.+.... ++.+.....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~-~V~lit~D-~~R~ga~EqL~~~a~~~-gv~~~~~~~---------- 202 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGAS-KVALLTTD-SYRIGGHEQLRIFGKIL-GVPVHAVKD---------- 202 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEecc-cccccHHHHHHHHHHHc-CCceEecCC----------
Confidence 467789999999999987655554433221111 45544432 22111223344444333 444333222
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccc
Q 018420 91 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE 164 (356)
Q Consensus 91 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 164 (356)
+..+...+. .+.+.++|+||++-...........+..+.....+...++.++||....
T Consensus 203 ------------~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 203 ------------GGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred ------------cccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 222222221 2345688999999755322222233333333233334588889997654
No 217
>PRK08181 transposase; Validated
Probab=97.52 E-value=0.00043 Score=57.92 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=57.9
Q ss_pred HhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhH
Q 018420 9 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 88 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 88 (356)
+..+++++++||+|+|||-.+...+...+..+. +++++ +...|.++..... ..
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~---~v~f~-~~~~L~~~l~~a~----~~------------------- 155 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGW---RVLFT-RTTDLVQKLQVAR----RE------------------- 155 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCC---ceeee-eHHHHHHHHHHHH----hC-------------------
Confidence 345788999999999999554333332333221 44444 4455555543211 00
Q ss_pred HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccc
Q 018420 89 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE 164 (356)
Q Consensus 89 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 164 (356)
.+.+.++. .+.+.+++|+||.+...........+..++.......++|+.|-.++..
T Consensus 156 ------------~~~~~~l~-------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 156 ------------LQLESAIA-------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGE 212 (269)
T ss_pred ------------CcHHHHHH-------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 01111222 1245678999999977542222334555554433335566666555443
No 218
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.0022 Score=56.08 Aligned_cols=129 Identities=14% Similarity=0.179 Sum_probs=67.4
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC--ch-HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH--TR-ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 89 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P--~~-~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 89 (356)
+.+++.||+|+|||+.....+......+. ++.++.. .| +..+|+.. +.... ++++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk---kVglI~aDt~RiaAvEQLk~----yae~l-gipv~------------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK---TVGFITTDHSRIGTVQQLQD----YVKTI-GFEVI------------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC---cEEEEecCCcchHHHHHHHH----Hhhhc-CCcEE-------------
Confidence 56789999999999876655544433222 4544443 22 34444433 22221 33222
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCcc-chHHH
Q 018420 90 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPV 168 (356)
Q Consensus 90 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~ 168 (356)
...++..+...+..-. .-.+.++|+||-+-+..........+.++.....+...++.+|||... +....
T Consensus 301 ---------v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i 370 (436)
T PRK11889 301 ---------AVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 370 (436)
T ss_pred ---------ecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHH
Confidence 1234445544332111 112578899999987643333344455555444444445668887654 33455
Q ss_pred HHhh
Q 018420 169 CKKF 172 (356)
Q Consensus 169 ~~~~ 172 (356)
+..+
T Consensus 371 ~~~F 374 (436)
T PRK11889 371 ITNF 374 (436)
T ss_pred HHHh
Confidence 5444
No 219
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.46 E-value=0.00022 Score=59.05 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=34.7
Q ss_pred CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCcc
Q 018420 113 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 163 (356)
Q Consensus 113 ~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 163 (356)
.....+.++.+|+||||.+.. +-...+.+.....+....+++.+.-+..
T Consensus 123 ~~~~~~~fKiiIlDEcdsmts--daq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 123 DGYPCPPFKIIILDECDSMTS--DAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred cCCCCCcceEEEEechhhhhH--HHHHHHHHHHhccccceEEEEEcCChhh
Confidence 344566788999999999854 4455666666666666778887776543
No 220
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.45 E-value=0.00016 Score=68.36 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=47.7
Q ss_pred ccccHhhHhcC-CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHH
Q 018420 2 QHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 65 (356)
Q Consensus 2 Q~~~~~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~ 65 (356)
|.+|+..++.. ...+|.||+|+|||.+....+...+..+. +|++++|+..-++++.+.+..
T Consensus 162 Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~---~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 162 QKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL---RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred HHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC---CEEEEcCcHHHHHHHHHHHHh
Confidence 78888888776 56789999999999775544444443333 799999999999999888865
No 221
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.0007 Score=60.89 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=16.8
Q ss_pred cEEEEccCCCccchHhHHHhhc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQ 35 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~ 35 (356)
.++++||.|+|||.++...+..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4699999999999876544443
No 222
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=97.38 E-value=0.00017 Score=72.79 Aligned_cols=93 Identities=24% Similarity=0.383 Sum_probs=76.8
Q ss_pred eEEEEecchhhHHHHHHHHHhC-CCCeEEEecCCC-----------HHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCC
Q 018420 219 QVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMS-----------QEERLTRYKGFKEGNKRILVATDLVGRGIDIERV 286 (356)
Q Consensus 219 ~~ivf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~-----------~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~ 286 (356)
..++|++....+....+.+... ...+..+.|.+. ...+.+++..|...++++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4789999999999998888875 233333444432 2335678888999999999999999999999999
Q ss_pred CEEEEecCCCChhhhhhccccccCC
Q 018420 287 NIVINYDMPDSADTYLHRVGRAGRF 311 (356)
Q Consensus 287 ~~vi~~~~~~s~~~~~Q~~GR~~R~ 311 (356)
+.++.++.|...+.|+|..||+.+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999774
No 223
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.30 E-value=0.00085 Score=54.68 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=31.2
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhC-CCCCcEEEEEecCccch
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEI 165 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~ 165 (356)
...+++++|++|.+.+...+...+..++... ..+.++|+.|..+|...
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4678899999999876444445555555443 34567777776776543
No 224
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.30 E-value=0.00093 Score=54.85 Aligned_cols=88 Identities=30% Similarity=0.410 Sum_probs=68.5
Q ss_pred CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCc-chHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCC
Q 018420 41 PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV-NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKN 119 (356)
Q Consensus 41 ~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 119 (356)
.+.|.++||+.+---+-.+.+.++.+.+. +..+.-+++.. ...++.+.+.....+|.|+||+++..+++.+.+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 35567888888765577777777766422 34555666654 6777788888777899999999999999999999999
Q ss_pred ccEEEEecccc
Q 018420 120 VRHFILDECDK 130 (356)
Q Consensus 120 ~~~viiDE~H~ 130 (356)
+.+||+|--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998774
No 225
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.0043 Score=55.77 Aligned_cols=129 Identities=16% Similarity=0.244 Sum_probs=65.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCc-CCCCCCeeEEEEcCc--hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQT-EPNPGQVTALVLCHT--RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK 88 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~-~~~~~~~~vlii~P~--~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 88 (356)
++.+++.+|||+|||++....+.... ..... ++.++.-. +.-+ .++++.+.... ++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~--~V~li~~D~~r~~a---~eqL~~~a~~~-~vp~~~----------- 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKK--KVALITLDTYRIGA---VEQLKTYAKIM-GIPVEV----------- 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCC--eEEEEECCccHHHH---HHHHHHHHHHh-CCceEc-----------
Confidence 56788999999999977654444333 22211 45554422 2111 12333333222 333222
Q ss_pred HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHh-hCCCCCcEEEEEecCcc-chH
Q 018420 89 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK-MTPHDKQVMMFSATLSK-EIR 166 (356)
Q Consensus 89 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~-~~~~~~~~i~~SaT~~~-~~~ 166 (356)
..++..+...+.. +...++|+||.+-+..........+..+.. ...+....+.++||... ...
T Consensus 284 -----------~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 284 -----------VYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred -----------cCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 1233333333321 235789999999765332333345555555 22233457888998764 333
Q ss_pred HHHHhh
Q 018420 167 PVCKKF 172 (356)
Q Consensus 167 ~~~~~~ 172 (356)
.....+
T Consensus 349 ~~~~~f 354 (424)
T PRK05703 349 DIYKHF 354 (424)
T ss_pred HHHHHh
Confidence 433333
No 226
>PRK05642 DNA replication initiation factor; Validated
Probab=97.25 E-value=0.00092 Score=55.15 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=27.5
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
..+++++|++|...+...+...+..++.......+.+++|++.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 45779999999876544445556666655444333555666543
No 227
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.25 E-value=0.00066 Score=52.61 Aligned_cols=124 Identities=19% Similarity=0.155 Sum_probs=52.2
Q ss_pred EEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcCC
Q 018420 16 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNEC 95 (356)
Q Consensus 16 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 95 (356)
++.|+-|-|||.+.-+++......+. .++++.+|+.+-++...+.+..-.... +.+... ..............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~----~~~~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEK----KKRIGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-------------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHHHHHHHHhhcccc-cccccc----cccccccccccccc
Confidence 57899999999775444444444433 379999999987777665544332211 111100 00000001111123
Q ss_pred CcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 96 PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 96 ~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
..|-+..|+.+... ....|++|||||=.+.- ..+..+.... ..+++|.|..
T Consensus 74 ~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp~-----p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 74 QRIEFVAPDELLAE-------KPQADLLIVDEAAAIPL-----PLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp CC--B--HHHHCCT-----------SCEEECTGGGS-H-----HHHHHHHCCS----SEEEEEEEBS
T ss_pred ceEEEECCHHHHhC-------cCCCCEEEEechhcCCH-----HHHHHHHhhC----CEEEEEeecc
Confidence 46777777777421 12357899999986633 4555554333 2566677764
No 228
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0017 Score=56.10 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.2
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
.++|+|+|+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 468999999999997653
No 229
>PRK08727 hypothetical protein; Validated
Probab=97.22 E-value=0.001 Score=54.84 Aligned_cols=48 Identities=4% Similarity=0.068 Sum_probs=27.5
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCC-CCCcEEEEEecCccch
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKEI 165 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~ 165 (356)
.+.++||+||+|...........+..++.... ...++|+.|..++...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 34567999999988654333334444444332 2344666665555543
No 230
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.19 E-value=0.01 Score=63.36 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=76.0
Q ss_pred ccccHhhHhcC--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 2 QHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
|++|+..++.+ +-.+|.++.|+|||.+ +-.+...+... + .+|+.+.|+.--+..+.+.. +.....
T Consensus 434 Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~-G-~~V~~lAPTgrAA~~L~e~~--------g~~A~T-- 500 (1960)
T TIGR02760 434 NKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ-G-YEIQIITAGSLSAQELRQKI--------PRLAST-- 500 (1960)
T ss_pred HHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHHh--------cchhhh--
Confidence 78889888875 4568999999999976 33444333322 2 27999999987666555432 111111
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhC-CCCCcEEEEE
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFS 158 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~~i~~S 158 (356)
...+...+.. ..-..|.+.|+ +....+..-++|||||+..+.. ..+..++... ..+.++|++.
T Consensus 501 ----i~~~l~~l~~---~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~-----~~~~~Ll~~a~~~garvVlvG 564 (1960)
T TIGR02760 501 ----FITWVKNLFN---DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN-----NELLKLIDKAEQHNSKLILLN 564 (1960)
T ss_pred ----HHHHHHhhcc---cccchhHHHhh----cccCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHhhcCCEEEEEc
Confidence 1111111111 11223444444 2333455678999999997744 3455555433 4678888877
Q ss_pred ec
Q 018420 159 AT 160 (356)
Q Consensus 159 aT 160 (356)
-+
T Consensus 565 D~ 566 (1960)
T TIGR02760 565 DS 566 (1960)
T ss_pred Ch
Confidence 66
No 231
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.17 E-value=0.00032 Score=67.10 Aligned_cols=77 Identities=13% Similarity=0.093 Sum_probs=55.4
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEcCchHHHHHHHHHHHHHhcc--CCCceEEEE
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTY--LPDIKVAVF 78 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~P~~~l~~q~~~~~~~~~~~--~~~~~v~~~ 78 (356)
|++|+.+ ....++|.|++|||||.+....+...+.. +-.+.++++++-|+..+..+.+++....+. ..++.++++
T Consensus 7 Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~~~~~v~i~Tf 84 (672)
T PRK10919 7 QQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRKEARGLMISTF 84 (672)
T ss_pred HHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcccccCcEEEcH
Confidence 5566654 34678999999999998877766666643 323348999999999999999999877542 124556665
Q ss_pred Ec
Q 018420 79 YG 80 (356)
Q Consensus 79 ~~ 80 (356)
|+
T Consensus 85 HS 86 (672)
T PRK10919 85 HT 86 (672)
T ss_pred HH
Confidence 54
No 232
>PLN03025 replication factor C subunit; Provisional
Probab=97.13 E-value=0.0037 Score=54.33 Aligned_cols=38 Identities=16% Similarity=0.313 Sum_probs=23.0
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
..+++|+||+|.+.. .-...+.+.....+....+++.+
T Consensus 99 ~~kviiiDE~d~lt~--~aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 99 RHKIVILDEADSMTS--GAQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CeEEEEEechhhcCH--HHHHHHHHHHhcccCCceEEEEe
Confidence 467899999998854 22344455555544455444433
No 233
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.10 E-value=0.0087 Score=50.17 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=67.3
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC--c-hHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH--T-RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 89 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P--~-~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 89 (356)
..+.+.+++|+|||..+...+......+. ++.++.. . .....||...... . ++++...
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~---~v~~i~~D~~ri~~~~ql~~~~~~----~-~~~~~~~----------- 136 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKK---TVGFITTDHSRIGTVQQLQDYVKT----I-GFEVIAV----------- 136 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCC---eEEEEecCCCCHHHHHHHHHHhhh----c-CceEEec-----------
Confidence 57889999999999765544433322211 3444443 2 2455665443222 1 3332221
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCcc-chHHH
Q 018420 90 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK-EIRPV 168 (356)
Q Consensus 90 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~ 168 (356)
.++..+...+..- ....+.++|+||-+-+..........+.++.....+...++.++||... +....
T Consensus 137 -----------~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 137 -----------RDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred -----------CCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 2233333222111 0123578899999987633233344455555554444456778998654 44455
Q ss_pred HHhh
Q 018420 169 CKKF 172 (356)
Q Consensus 169 ~~~~ 172 (356)
++.+
T Consensus 205 ~~~f 208 (270)
T PRK06731 205 ITNF 208 (270)
T ss_pred HHHh
Confidence 5554
No 234
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.10 E-value=0.0016 Score=53.79 Aligned_cols=43 Identities=2% Similarity=0.074 Sum_probs=24.8
Q ss_pred ccEEEEeccccccccccchhHHHHHHhhCC-CC-CcEEEEEecCc
Q 018420 120 VRHFILDECDKMLESLDMRRDVQEIFKMTP-HD-KQVMMFSATLS 162 (356)
Q Consensus 120 ~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~-~~~i~~SaT~~ 162 (356)
.+++++||+|.+.....+...+..++.... .+ .++++.|..++
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 467999999988654444445555554432 22 34555444443
No 235
>PRK06893 DNA replication initiation factor; Validated
Probab=97.10 E-value=0.0015 Score=53.73 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=27.8
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCC-CCCcEEEEEecCcc
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSK 163 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~ 163 (356)
.+.+++++||+|.......+...+..++.... .+.+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 45678999999988653334444445444333 34456677776543
No 236
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.08 E-value=0.0017 Score=53.40 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCccchHhHH
Q 018420 12 GMDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~ 31 (356)
+..+++.||+|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46789999999999976443
No 237
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.08 E-value=0.0017 Score=59.24 Aligned_cols=47 Identities=9% Similarity=0.119 Sum_probs=26.7
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHH
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 61 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~ 61 (356)
+.++++||+|+|||... .++...+.......+++++.. ..+..+...
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~v~yi~~-~~~~~~~~~ 195 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYVTS-EKFTNDFVN 195 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHH
Confidence 45899999999999653 333333332221225666643 455554433
No 238
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.07 E-value=0.0012 Score=59.94 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=57.6
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 92 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 92 (356)
+.++++|++|+|||-. +.++...+.....+.+++++.+ ..+.......+..- .
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~-----~-------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKT-----H-------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHh-----h--------------------
Confidence 3488999999999954 3444444333222236777665 45665555444320 0
Q ss_pred cCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhC-CCCCcEEEEEecCcc
Q 018420 93 NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSK 163 (356)
Q Consensus 93 ~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~ 163 (356)
...+.+.. .....+++++||+|.+.........+..++... ....++|+.|-.+|.
T Consensus 195 --------~~~~~~~~-------~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~ 251 (450)
T PRK14087 195 --------KEIEQFKN-------EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPE 251 (450)
T ss_pred --------hHHHHHHH-------HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 00111211 124567899999998864323334444444433 234455555555443
No 239
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0036 Score=56.95 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=16.8
Q ss_pred CcEEEEccCCCccchHhHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~ 33 (356)
+.++++||.|+|||.++.+.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 568999999999997765443
No 240
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0037 Score=60.71 Aligned_cols=39 Identities=15% Similarity=0.270 Sum_probs=25.7
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
.+.+++||||+|.+.. .-...+.++++..+....+|++|
T Consensus 119 ~~~KV~IIDEad~lt~--~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTP--QGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 4678899999999854 23344555666555556566655
No 241
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.02 E-value=0.0033 Score=48.55 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCcc
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 163 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 163 (356)
...+++|+||+|.+.. .-...+.+.+..-+.+..++++|..+..
T Consensus 101 ~~~KviiI~~ad~l~~--~a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE--EAQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-H--HHHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhH--HHHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 4678999999998854 4455666777777677766666665543
No 242
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.99 E-value=0.005 Score=47.51 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=24.2
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHH
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELA 56 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~ 56 (356)
+++.||+|+|||..+...+...... +..++++.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECCcchH
Confidence 6899999999997654333333322 22677777654433
No 243
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.98 E-value=0.0037 Score=54.84 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=24.7
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
...++||+||+|.+.. .....+..+....+....+|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE--DAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH--HHHHHHHHHHHhccCCCeEEEEeC
Confidence 4567899999998743 223345555555555565665443
No 244
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.97 E-value=0.0025 Score=57.39 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=22.7
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 51 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P 51 (356)
..++++||+|+|||... .++...+.....+.+++++..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEEH
Confidence 34789999999999653 333333332221225677643
No 245
>PF13173 AAA_14: AAA domain
Probab=96.97 E-value=0.012 Score=43.56 Aligned_cols=38 Identities=8% Similarity=0.205 Sum_probs=24.9
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
.-.+|++||+|.+ .++...++.+.+.. ++.++++++..
T Consensus 61 ~~~~i~iDEiq~~---~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYL---PDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhh---ccHHHHHHHHHHhc-cCceEEEEccc
Confidence 4456999999998 45666677776654 34545554443
No 246
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.97 E-value=0.0038 Score=51.52 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=25.7
Q ss_pred CCccEEEEeccccccccccchh-HHHHHHhh-CCCCCcEEEEEecCcc
Q 018420 118 KNVRHFILDECDKMLESLDMRR-DVQEIFKM-TPHDKQVMMFSATLSK 163 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~SaT~~~ 163 (356)
...+++||||++.... ..+.. .+..++.. .....+++..|--...
T Consensus 161 ~~~dlLvIDDig~~~~-s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~ 207 (244)
T PRK07952 161 SNVDLLVIDEIGVQTE-SRYEKVIINQIVDRRSSSKRPTGMLTNSNME 207 (244)
T ss_pred ccCCEEEEeCCCCCCC-CHHHHHHHHHHHHHHHhCCCCEEEeCCCCHH
Confidence 4678899999997653 33332 34444443 3334556665554433
No 247
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.97 E-value=0.0051 Score=58.26 Aligned_cols=40 Identities=8% Similarity=0.285 Sum_probs=23.8
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
.+++++||||+|.+.. ..+. .+.+.++.-+....+|+.|.
T Consensus 118 gr~KVIIIDEah~LT~-~A~N-ALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTN-HAFN-AMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCH-HHHH-HHHHHHHhcCCCeEEEEEEC
Confidence 4578899999998854 2333 34444554444554555443
No 248
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.95 E-value=0.0039 Score=56.49 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=23.3
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 51 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P 51 (356)
+.++++||+|+|||-.. .++...+.......+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 35899999999999653 334443332222226777754
No 249
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.0042 Score=57.25 Aligned_cols=39 Identities=8% Similarity=0.238 Sum_probs=24.5
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
.+++++||||+|.+.. .. ...+.+.+...++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~-~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSG-HS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCH-HH-HHHHHHHHhccCCCeEEEEEE
Confidence 4578899999998865 22 233444555555555566655
No 250
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.95 E-value=0.017 Score=51.99 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=29.6
Q ss_pred cEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccchHHHHHh
Q 018420 121 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKK 171 (356)
Q Consensus 121 ~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 171 (356)
++||||.+-+..........+..+.....+..-++.++|+...+....+..
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 778888885443223444455555555555556777777766544333333
No 251
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.94 E-value=0.0053 Score=52.45 Aligned_cols=48 Identities=19% Similarity=0.170 Sum_probs=27.2
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHH
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 63 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~ 63 (356)
.++++|+|+|+|||..+-+.+-...... -+.+=+..+.+-++...+.+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccchHHHHHHH
Confidence 4689999999999976433333222211 14455555555444444433
No 252
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.007 Score=56.58 Aligned_cols=39 Identities=8% Similarity=0.225 Sum_probs=23.4
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
.+.+++||||+|.+.. . ....+.+.+...+....+|+.|
T Consensus 117 gk~KV~IIDEVh~LS~-~-A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLST-H-SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCH-H-HHHHHHHHHhcCCCCcEEEEEE
Confidence 3567899999998854 2 2333444555444445455544
No 253
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0063 Score=56.77 Aligned_cols=41 Identities=7% Similarity=0.284 Sum_probs=24.6
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
.+++++||||+|.+.. ..+ ..+.+.++.-+....+|+.|.-
T Consensus 123 gr~KViIIDEah~Ls~-~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTN-HAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCH-HHH-HHHHHhhccCCCCceEEEEeCC
Confidence 4678899999998854 222 2333444444445556665543
No 254
>PRK09183 transposase/IS protein; Provisional
Probab=96.92 E-value=0.0036 Score=52.40 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=27.3
Q ss_pred HhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHH
Q 018420 9 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 58 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q 58 (356)
+.++.++++.||+|+|||..+..........+. ++.++. ...+..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~---~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGI---KVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC---eEEEEe-HHHHHHH
Confidence 456788999999999999654433332222221 455543 3444443
No 255
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.92 E-value=0.0073 Score=53.60 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=70.2
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhcc----CCC---ceEEEEEcCcc
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY----LPD---IKVAVFYGGVN 83 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~----~~~---~~v~~~~~~~~ 83 (356)
.|+. -|.+-.|||||...++.+.....++++. ++++.+=++.|..++...+.+|+-. -|+ ..++.-.||.+
T Consensus 176 ~G~q-rIrGLAGSGKT~~La~Kaa~lh~knPd~-~I~~Tfftk~L~s~~r~lv~~F~f~~~e~~pdW~~~l~~h~wgG~t 253 (660)
T COG3972 176 FGKQ-RIRGLAGSGKTELLAHKAAELHSKNPDS-RIAFTFFTKILASTMRTLVPEFFFMRVEKQPDWGTKLFCHNWGGLT 253 (660)
T ss_pred Cchh-hhhcccCCCchhHHHHHHHHHhcCCCCc-eEEEEeehHHHHHHHHHHHHHHHHHHhhcCCCccceEEEeccCCCC
Confidence 3444 6788899999988777777777777777 7999999999999988887776521 122 34444445444
Q ss_pred hHHh-HH-HHhcCCCcEEEec----hHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 84 IKIH-KD-LLKNECPQIVVGT----PGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 84 ~~~~-~~-~~~~~~~~i~v~T----~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
..-. .. ....+...+-++- .......+-+...+..-+++|.|||++.+..
T Consensus 254 ~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDFP~ 309 (660)
T COG3972 254 KEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDFPQ 309 (660)
T ss_pred CCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccCCH
Confidence 2211 00 0011001111110 1112222212222356689999999998854
No 256
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.0062 Score=58.83 Aligned_cols=38 Identities=8% Similarity=0.253 Sum_probs=23.1
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
.+.+++||||+|.+.. .-...+.+.+..-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~--eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR--SSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH--HHHHHHHHHHhccCCCeEEEEE
Confidence 4577899999999853 2333444555544444545554
No 257
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.87 E-value=0.0011 Score=58.68 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=35.5
Q ss_pred ccccHhhH------hcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHH
Q 018420 2 QHECIPQA------ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELA 56 (356)
Q Consensus 2 Q~~~~~~~------~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~ 56 (356)
|++++..+ .++..++|.|+.|+|||..+ -.+...+... +..+++++||-.-+
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~~--~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRSR--GKKVLVTAPTGIAA 63 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhccc--cceEEEecchHHHH
Confidence 66776666 56888999999999999663 3333333332 22688888886433
No 258
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.83 E-value=0.001 Score=64.47 Aligned_cols=77 Identities=18% Similarity=0.210 Sum_probs=55.2
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEcCchHHHHHHHHHHHHHhccC-CCceEEEEE
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYL-PDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~-~~~~v~~~~ 79 (356)
|++|+.+ ....++|.|++|||||.+....+...+.. +-.+.++++++-|+..+..+.+++.++.+.. .++.++++|
T Consensus 9 Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~~~~~~i~TfH 86 (715)
T TIGR01075 9 QREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTSARGMWIGTFH 86 (715)
T ss_pred HHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhcccccCcEEEcHH
Confidence 5555543 24679999999999998877666665543 2233489999999999999999998876532 245566655
Q ss_pred c
Q 018420 80 G 80 (356)
Q Consensus 80 ~ 80 (356)
+
T Consensus 87 s 87 (715)
T TIGR01075 87 G 87 (715)
T ss_pred H
Confidence 3
No 259
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.82 E-value=0.0025 Score=51.08 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
.+++++||+|+|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 36899999999999664
No 260
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.82 E-value=0.0041 Score=49.43 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=32.3
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
++|.||+|+|||...+-.+...+..+. +++|+... +-.+++.++++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~---~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGE---PGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCC---cEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999776544444443332 67888753 4566676666555
No 261
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.82 E-value=0.0046 Score=63.59 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=38.1
Q ss_pred ccccHhhHhcC--CcEEEEccCCCccchHh--HHHhhcCcCCCCCCeeEEEEcCchHHHHHH
Q 018420 2 QHECIPQAILG--MDVICQAKSGMGKTAVF--VLSTLQQTEPNPGQVTALVLCHTRELAYQI 59 (356)
Q Consensus 2 Q~~~~~~~~~~--~~~li~~~tGsGKT~~~--~~~~~~~~~~~~~~~~vlii~P~~~l~~q~ 59 (356)
|++|+..++.+ +-++|.+.+|+|||++. ++.++..+.+..+ .+++.+.||-.-+..+
T Consensus 840 Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g-~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 840 QRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESER-PRVVGLGPTHRAVGEM 900 (1623)
T ss_pred HHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccC-ceEEEEechHHHHHHH
Confidence 78899998864 56789999999999763 1222222222222 2688899987655544
No 262
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.80 E-value=0.0012 Score=63.63 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=54.4
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEcCchHHHHHHHHHHHHHhccC--CCceEEEE
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYL--PDIKVAVF 78 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~--~~~~v~~~ 78 (356)
|++++.+ ...+++|.|++|||||.+....+...+.. +....++++++.++..+.++.+++.+..+.. .++.+.++
T Consensus 6 Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~~~~~v~v~Tf 83 (664)
T TIGR01074 6 QQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKGEARGLTISTF 83 (664)
T ss_pred HHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCccccCCeEEEeH
Confidence 5555543 35689999999999998877777766643 2234478999888999999999998766432 23455555
Q ss_pred Ec
Q 018420 79 YG 80 (356)
Q Consensus 79 ~~ 80 (356)
|+
T Consensus 84 Hs 85 (664)
T TIGR01074 84 HT 85 (664)
T ss_pred HH
Confidence 43
No 263
>PRK12377 putative replication protein; Provisional
Probab=96.79 E-value=0.0044 Score=51.29 Aligned_cols=45 Identities=11% Similarity=0.209 Sum_probs=26.3
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHH
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 61 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~ 61 (356)
.+++++||+|+|||..+. ++...+..... .+++ ++..+|..++..
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~~g~--~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLAKGR--SVIV-VTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHcCC--CeEE-EEHHHHHHHHHH
Confidence 578999999999996533 33333332221 3443 444566665544
No 264
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.79 E-value=0.0013 Score=63.79 Aligned_cols=77 Identities=22% Similarity=0.252 Sum_probs=54.7
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEcCchHHHHHHHHHHHHHhccC-CCceEEEEE
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYL-PDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~-~~~~v~~~~ 79 (356)
|.+|+.. ....++|.|++|||||.+....+...+.. +-.+.++++++-|+..+..+.+++.++.+.. .++.++++|
T Consensus 14 Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~~~~~~i~TfH 91 (721)
T PRK11773 14 QREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTSQGGMWVGTFH 91 (721)
T ss_pred HHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccCCCCCEEEcHH
Confidence 4555543 24679999999999998877666655542 2233479999999999999999998876532 245566655
Q ss_pred c
Q 018420 80 G 80 (356)
Q Consensus 80 ~ 80 (356)
+
T Consensus 92 s 92 (721)
T PRK11773 92 G 92 (721)
T ss_pred H
Confidence 4
No 265
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.007 Score=56.49 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
...+++||||+|.+.. .-...+.+.+...+....+|+.|
T Consensus 117 ~~~KVvIIDEah~Lt~--~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTT--AGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 4678899999998865 22233444445444455455555
No 266
>PRK06921 hypothetical protein; Provisional
Probab=96.77 E-value=0.0048 Score=51.88 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 58 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q 58 (356)
++.++++|++|+|||..+ .++...+....+ ..++++. ...+..+
T Consensus 117 ~~~l~l~G~~G~GKThLa-~aia~~l~~~~g-~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLL-TAAANELMRKKG-VPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHhhhcC-ceEEEEE-HHHHHHH
Confidence 567999999999999653 344444433211 2456655 3444444
No 267
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.77 E-value=0.0052 Score=57.14 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=29.2
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCC-CCCcEEEEEecCccc
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKE 164 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~ 164 (356)
.+.++|+|||+|.+.+.......+..+++.+. .+.++|+.|-.++..
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 45788999999988664333444555554443 356677666555544
No 268
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.76 E-value=0.0079 Score=54.51 Aligned_cols=49 Identities=10% Similarity=0.262 Sum_probs=28.6
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhC-CCCCcEEEEEecCccchH
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIR 166 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~ 166 (356)
...+++++||+|.+.+.......+..++..+ ....++|+.|.+++..+.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 3567899999998865333334444444322 234566666655555443
No 269
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.75 E-value=0.01 Score=55.68 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=16.2
Q ss_pred cEEEEccCCCccchHhHHHhh
Q 018420 14 DVICQAKSGMGKTAVFVLSTL 34 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~ 34 (356)
-++++||.|+|||.++...+.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 358999999999987655433
No 270
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.74 E-value=0.014 Score=43.20 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=13.0
Q ss_pred EEEEccCCCccchHh
Q 018420 15 VICQAKSGMGKTAVF 29 (356)
Q Consensus 15 ~li~~~tGsGKT~~~ 29 (356)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999764
No 271
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.69 E-value=0.0017 Score=61.97 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=48.0
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC-CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
..+++|.|++|||||.+....+...+... ..+.++++++.++..+..+.+++....+. .++.+.++|
T Consensus 209 ~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~-~~v~v~TFH 276 (684)
T PRK11054 209 EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT-EDITARTFH 276 (684)
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC-CCcEEEeHH
Confidence 45689999999999988766554433322 12338999999999999999998876642 245555544
No 272
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.69 E-value=0.036 Score=49.56 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=22.0
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 51 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P 51 (356)
-+++++++|+|||++....+......+. +++++..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~---kV~lV~~ 136 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGF---KPCLVCA 136 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEcC
Confidence 4678999999999776544443322221 5666654
No 273
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.67 E-value=0.0071 Score=63.06 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=37.8
Q ss_pred ccccHhhHhcC--CcEEEEccCCCccchHhHHHhhcC---cCCCCCCeeEEEEcCchHHHHHH
Q 018420 2 QHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQ---TEPNPGQVTALVLCHTRELAYQI 59 (356)
Q Consensus 2 Q~~~~~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~---~~~~~~~~~vlii~P~~~l~~q~ 59 (356)
|++|+..++.+ +-++|.+.+|+|||.+. -.+... +... .+.+++.+.||---+..+
T Consensus 972 Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~-~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 972 QRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPES-ERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcc-cCceEEEECCcHHHHHHH
Confidence 88899999875 45789999999999763 222222 2222 222688899987655543
No 274
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.013 Score=56.08 Aligned_cols=132 Identities=10% Similarity=0.147 Sum_probs=64.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 91 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 91 (356)
++-+.+.+|+|+|||+++...+.......... ++.++.....-. -..++++.+.... ++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~k-kV~lit~Dt~Ri-gA~eQL~~~a~~~-gvpv~--------------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGAD-QLALLTTDSFRI-GALEQLRIYGRIL-GVPVH--------------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCC-eEEEecCcccch-HHHHHHHHHHHhC-CCCcc---------------
Confidence 45578999999999987654444332222111 455544322110 0123333333322 33222
Q ss_pred hcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccc-hHHHHH
Q 018420 92 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE-IRPVCK 170 (356)
Q Consensus 92 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~~~~ 170 (356)
.+.+++.+...+. .+.+.++|+||=+-+..........+..+.....+...++.++||.... +.+.+.
T Consensus 247 -------~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~ 315 (767)
T PRK14723 247 -------AVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVH 315 (767)
T ss_pred -------ccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHH
Confidence 1224444444333 1235577888888765432233333444444444455677788886532 333444
Q ss_pred hh
Q 018420 171 KF 172 (356)
Q Consensus 171 ~~ 172 (356)
.+
T Consensus 316 ~f 317 (767)
T PRK14723 316 AY 317 (767)
T ss_pred HH
Confidence 43
No 275
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.63 E-value=0.028 Score=47.41 Aligned_cols=47 Identities=13% Similarity=0.408 Sum_probs=29.7
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCC------CCCcEEEEEecCccc
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP------HDKQVMMFSATLSKE 164 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~------~~~~~i~~SaT~~~~ 164 (356)
.++++|+||=+-+..........+.++..... +.-.++.++||...+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~ 205 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN 205 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH
Confidence 56788999988876443344445555554443 445578888886544
No 276
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.0084 Score=54.69 Aligned_cols=20 Identities=30% Similarity=0.313 Sum_probs=15.6
Q ss_pred CcEEEEccCCCccchHhHHH
Q 018420 13 MDVICQAKSGMGKTAVFVLS 32 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~ 32 (356)
+.++++||+|+|||..+...
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34699999999999775443
No 277
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.61 E-value=0.011 Score=51.21 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=24.4
Q ss_pred CccccHhhHhcC----CcEEEEccCCCccchHhHHHhhc
Q 018420 1 MQHECIPQAILG----MDVICQAKSGMGKTAVFVLSTLQ 35 (356)
Q Consensus 1 ~Q~~~~~~~~~~----~~~li~~~tGsGKT~~~~~~~~~ 35 (356)
||...+..+... +..+++||.|.|||..+...+..
T Consensus 7 Wl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ 45 (328)
T PRK05707 7 WQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAA 45 (328)
T ss_pred CcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHH
Confidence 466677777653 34789999999999765443333
No 278
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.60 E-value=0.0084 Score=53.92 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=22.1
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEc
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 50 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~ 50 (356)
.+++|.||+|+|||.+. -.++..+........++++.
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~~~~~~~~~v~in 92 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELEEIAVKVVYVYIN 92 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEEEE
Confidence 56899999999999764 33443332222122455553
No 279
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.0095 Score=54.84 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.2
Q ss_pred cEEEEccCCCccchHhHHH
Q 018420 14 DVICQAKSGMGKTAVFVLS 32 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~ 32 (356)
.++++||+|+|||.++...
T Consensus 38 a~Lf~GppGtGKTTlA~~l 56 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLI 56 (504)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3599999999999875443
No 280
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.59 E-value=0.012 Score=52.18 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=15.5
Q ss_pred cEEEEccCCCccchHhHHHh
Q 018420 14 DVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~ 33 (356)
.++++||+|+|||..+...+
T Consensus 40 ~~L~~Gp~G~GKTtla~~la 59 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLA 59 (363)
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 36899999999997754433
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.012 Score=51.37 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=58.9
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC--ch-HHHHHHHHHHHHHhccCCCceEEEEEcCcchHHh
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH--TR-ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH 87 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P--~~-~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 87 (356)
.++.+++.+|+|+|||......+......+. ++.++.- .+ .-.+||.. +.... ++.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~---~V~lItaDtyR~gAveQLk~----yae~l-gvpv~~---------- 266 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNR---TVGFITTDTFRSGAVEQFQG----YADKL-DVELIV---------- 266 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCccCccHHHHHHH----HhhcC-CCCEEe----------
Confidence 3566789999999999776555444333322 4554443 22 22444433 32222 332221
Q ss_pred HHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 88 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 88 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
..+|+.+...+..-. ..++.++|+||=+-+..........+..+.....+..-++.+|||..
T Consensus 267 ------------~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~ 328 (407)
T PRK12726 267 ------------ATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK 328 (407)
T ss_pred ------------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc
Confidence 123444433222111 12456889999887653323333444455444433333445555443
No 282
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.58 E-value=0.0048 Score=63.27 Aligned_cols=119 Identities=19% Similarity=0.146 Sum_probs=72.1
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|.+|+. ..+++++|.|+.|||||.+..-.++..+..+....++++++=|+..+..+.+++++.....-.- ..
T Consensus 6 Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~------~p 77 (1232)
T TIGR02785 6 QWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ------EP 77 (1232)
T ss_pred HHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc------Cc
Confidence 566665 3588999999999999988776666655444333379999999999999999888755331000 00
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCc--cEEEEecccc
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNV--RHFILDECDK 130 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~--~~viiDE~H~ 130 (356)
.. ....+.+.. -...-|+|.+.|...+-+.....-++ .+=|.||...
T Consensus 78 ~~-~~L~~q~~~-~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 78 NS-KHLRRQLAL-LNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred hh-HHHHHHHhh-ccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 11 111111222 23677899999976443322211111 2345776664
No 283
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.54 E-value=0.0084 Score=51.92 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=26.4
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 59 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~ 59 (356)
+++++++||||+|||..+...+-..+..+. .|+++ +...|..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~---~V~y~-t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGK---SVIYR-TADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEE-EHHHHHHHH
Confidence 578999999999999654333333332221 45554 445555544
No 284
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.53 E-value=0.0051 Score=51.79 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=15.2
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997653
No 285
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.53 E-value=0.012 Score=55.34 Aligned_cols=38 Identities=8% Similarity=0.249 Sum_probs=22.7
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
...+++||||+|.+.. .. ...+.+.+..-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~-~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSR-HS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCH-HH-HHHHHHHHHcCCCCeEEEEe
Confidence 4577899999998854 22 33344444544444444544
No 286
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.51 E-value=0.011 Score=48.73 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..++++||+|+|||..+
T Consensus 42 ~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999553
No 287
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.50 E-value=0.013 Score=51.73 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=25.8
Q ss_pred cCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 117 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 117 ~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
-....++||||+|.+.. .-...+.+....-+....+|++|..+
T Consensus 139 ~~~~kVviIDead~m~~--~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA--NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCH--HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 35677899999998843 33334445555544455455555554
No 288
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.50 E-value=0.039 Score=53.31 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.3
Q ss_pred EEEEccCCCccchHhH
Q 018420 15 VICQAKSGMGKTAVFV 30 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~ 30 (356)
++|.|+||+|||.+.-
T Consensus 784 LYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 784 LYISGMPGTGKTATVY 799 (1164)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3599999999997753
No 289
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.49 E-value=0.0061 Score=53.74 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=32.2
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCC-CCCcEEEEEecCccch
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKEI 165 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~ 165 (356)
+.++++||+++.+.+.......+...+..+. .+.|+++.|..+|..+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 5678999999998776555666666655544 3456777776666553
No 290
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.48 E-value=0.012 Score=49.00 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=27.3
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 51 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P 51 (356)
..|.-++|.|+||+|||...+-.+........ .+++|++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeC
Confidence 34667899999999999765555555444311 16788884
No 291
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.48 E-value=0.014 Score=54.81 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=24.7
Q ss_pred cCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 117 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 117 ~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
....+++||||+|.+.. .-...+.+.+...++...+|+.|
T Consensus 130 ~a~~KVvIIDEad~Ls~--~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLST--AAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCH--HHHHHHHHHHHhCCCCeEEEEEe
Confidence 35678899999998854 22333444455545555566655
No 292
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.051 Score=45.36 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=37.5
Q ss_pred HhhHhcCCc-----EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHh
Q 018420 6 IPQAILGMD-----VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 67 (356)
Q Consensus 6 ~~~~~~~~~-----~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~ 67 (356)
+|+++.|+. +++.+|+|+||+..+ -+..... + -.++-+.+..|+..|.-+-+++.
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLA-KAVATEA--n----STFFSvSSSDLvSKWmGESEkLV 214 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLA-KAVATEA--N----STFFSVSSSDLVSKWMGESEKLV 214 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHH-HHHHhhc--C----CceEEeehHHHHHHHhccHHHHH
Confidence 466777655 799999999999442 2222222 2 36777888899999876665554
No 293
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.46 E-value=0.023 Score=51.88 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=19.4
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhc
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQ 35 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~ 35 (356)
..++.+.+.+|+|+|||......+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44677889999999999776444433
No 294
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.022 Score=53.55 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=23.7
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
...+++||||+|.+.. +-...+.+.+..-++...+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~--~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLST--NAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCH--HHHHHHHHHHHcCCCCeEEEEEe
Confidence 5678899999998854 22334445555444445455544
No 295
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.034 Score=49.66 Aligned_cols=132 Identities=12% Similarity=0.174 Sum_probs=61.8
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 89 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 89 (356)
.++.+.+.||+|+|||+.....+...... .... ..++...+--. ...+++..+.... ++.+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~-v~~i~~d~~ri--galEQL~~~a~il-Gvp~~~v----------- 254 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADK-VALLTTDSYRI--GGHEQLRIYGKLL-GVSVRSI----------- 254 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCe-EEEEecCCcch--hHHHHHHHHHHHc-CCceecC-----------
Confidence 46678899999999997765433322211 1121 23444443111 1223333333332 4333321
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccc-hHHH
Q 018420 90 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKE-IRPV 168 (356)
Q Consensus 90 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~-~~~~ 168 (356)
.++..+...+. .+++.+.++||.+-+.-........+..+.....+...++.++||.... ..+.
T Consensus 255 -----------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 255 -----------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred -----------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 22222222221 2356678999986433211122233344333233344578899997543 3444
Q ss_pred HHhh
Q 018420 169 CKKF 172 (356)
Q Consensus 169 ~~~~ 172 (356)
...+
T Consensus 320 ~~~f 323 (420)
T PRK14721 320 ISAY 323 (420)
T ss_pred HHHh
Confidence 4443
No 296
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.44 E-value=0.019 Score=52.81 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=17.0
Q ss_pred CcEEEEccCCCccchHhHHHhh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTL 34 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~ 34 (356)
+.++++||.|+|||.++...+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk 65 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAK 65 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999977644433
No 297
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.44 E-value=0.035 Score=48.31 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=23.8
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
..++|++||+|.+.. .....+.......+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~--~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTS--DAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCH--HHHHHHHHHHhcCCCCCeEEEEe
Confidence 356899999998844 22344555555555556566544
No 298
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.43 E-value=0.014 Score=55.09 Aligned_cols=39 Identities=10% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
...+++||||+|.+.. .-...+.+.+...+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~--~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSK--SAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCH--HHHHHHHHHHHhCCCCcEEEEEe
Confidence 4568899999998753 22233445555444556566655
No 299
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.43 E-value=0.022 Score=51.15 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=16.4
Q ss_pred CcEEEEccCCCccchHhHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~ 33 (356)
+.++++||+|+|||.++...+
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHH
Confidence 347899999999997765443
No 300
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.41 E-value=0.022 Score=49.52 Aligned_cols=39 Identities=15% Similarity=0.299 Sum_probs=24.9
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
..++||+||+|.+.. ......+..+....+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~-~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGL-ADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccC-HHHHHHHHHHHHhcCCCceEEEEc
Confidence 456899999998733 233445566666666666566544
No 301
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.40 E-value=0.03 Score=47.43 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=32.4
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
.|..+++.|++|+|||......+....... +.+++|+.-- .-..++..++...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~E-~~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISLE-EPVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEcc-cCHHHHHHHHHHH
Confidence 356789999999999976554444443331 1267887643 2345555555443
No 302
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.40 E-value=0.06 Score=51.34 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhC-C-CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccc
Q 018420 203 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-N-FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 278 (356)
Q Consensus 203 ~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~ 278 (356)
.|.+....++... .++.+||.+|.+..+.++.+.|++. + ..+..+|+++++.+|.+.+....+|+.+|+|+|-.+.
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 3444444444333 4678999999999999999999876 4 6788999999999999999999999999999996533
Q ss_pred cCCCCCCCCEEEEecCCCChhhhhhccc-c-------ccCCCCcceEEEEEccCCChHHHHHH
Q 018420 279 RGIDIERVNIVINYDMPDSADTYLHRVG-R-------AGRFGTKGLAITFVSSASDSDILNQV 333 (356)
Q Consensus 279 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~G-R-------~~R~~~~~~~~~~~~~~~~~~~~~~~ 333 (356)
. .-++++..+|..+... .+|.|--+ | .-|....|..+++-+....-+.+...
T Consensus 252 F-aP~~~LgLIIvdEEhd--~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 252 F-APVEDLGLVAIWDDGD--DLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred E-eccCCCCEEEEEcCCc--hhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 2 3556778888776432 23444321 1 01223356667776766665555443
No 303
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.015 Score=53.75 Aligned_cols=39 Identities=8% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
...+++||||+|.+.. .-...+.+.+...+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~--~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSK--QSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccH--HHHHHHHHHHhcCCCCceEEEEE
Confidence 4567899999998854 23334555555544455555555
No 304
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.36 E-value=0.014 Score=53.74 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=77.2
Q ss_pred CccccHhhHhc---------CCcEEEEccCCCccchHhHHHhh-cCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccC
Q 018420 1 MQHECIPQAIL---------GMDVICQAKSGMGKTAVFVLSTL-QQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL 70 (356)
Q Consensus 1 ~Q~~~~~~~~~---------~~~~li~~~tGsGKT~~~~~~~~-~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~ 70 (356)
+|+-.+..++. -+.+++.-|=|-|||......++ ..+..+..+..++++++++.-+....+.++.+....
T Consensus 2 wQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~ 81 (477)
T PF03354_consen 2 WQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEAS 81 (477)
T ss_pred cHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 45666666552 23478888999999965443333 223333344479999999999999999888887665
Q ss_pred CCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc--CCcccCCccEEEEeccccccccccchhHHHHHHhhC
Q 018420 71 PDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD--KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT 148 (356)
Q Consensus 71 ~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~ 148 (356)
|.+.... .. +........|.......++..+.. ....-.+.+++|+||+|...+ ......+..-....
T Consensus 82 ~~l~~~~--~~-------~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~-~~~~~~l~~g~~~r 151 (477)
T PF03354_consen 82 PELRKRK--KP-------KIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKD-DELYDALESGMGAR 151 (477)
T ss_pred hhhccch--hh-------hhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCC-HHHHHHHHhhhccC
Confidence 4332111 00 000010113332222222221111 122233467899999998854 22333333333333
Q ss_pred CCCCcEEEE
Q 018420 149 PHDKQVMMF 157 (356)
Q Consensus 149 ~~~~~~i~~ 157 (356)
++++++.+
T Consensus 152 -~~pl~~~I 159 (477)
T PF03354_consen 152 -PNPLIIII 159 (477)
T ss_pred -CCceEEEE
Confidence 33434443
No 305
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.31 E-value=0.043 Score=52.34 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=35.9
Q ss_pred ccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 120 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 120 ~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
.=++|+|+.|.+.+ ......+..+.+..+++...++.|-+-|
T Consensus 130 pl~LVlDDyHli~~-~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 130 PLYLVLDDYHLISD-PALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred ceEEEeccccccCc-ccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 34699999999987 6777889999999999999999998854
No 306
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.033 Score=52.15 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=18.0
Q ss_pred CcEEEEccCCCccchHhHHHhhcC
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQ 36 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~ 36 (356)
+.+|+++|.|+|||.++...+...
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999998765544433
No 307
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.02 Score=53.99 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=16.9
Q ss_pred CcEEEEccCCCccchHhHHHhh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTL 34 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~ 34 (356)
+..|++||.|+|||.++...+.
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999977654443
No 308
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.28 E-value=0.02 Score=55.18 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=66.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-ccccCCCCCCCCEEE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 290 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-~~~~G~d~~~~~~vi 290 (356)
.+.++++.+|+.+.|.+.++.+++. +.++..++|+++..++.+.+..+.+|+.+|+|+|. .+...+.++++..||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4568999999999999888777654 68899999999999999999999999999999995 466677888888888
Q ss_pred Eec
Q 018420 291 NYD 293 (356)
Q Consensus 291 ~~~ 293 (356)
+-.
T Consensus 389 IDE 391 (681)
T PRK10917 389 IDE 391 (681)
T ss_pred Eec
Confidence 543
No 309
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.02 Score=52.76 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=25.1
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
...+++||||+|.+.. .-...+.+.+...++...+|+.|
T Consensus 116 ~~~KVvIIDEad~Lt~--~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTK--EAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCH--HHHHHHHHHHhhcCCceEEEEEE
Confidence 5678899999998854 22334455555555556566655
No 310
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.27 E-value=0.054 Score=52.14 Aligned_cols=78 Identities=17% Similarity=0.328 Sum_probs=65.2
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC-CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM 294 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~ 294 (356)
.++++++.+|+++.+.++.+.+++. +..+..+||+++..++.+.+.....|+.+|+|+|..... ..++++..+|+.+.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 3578999999999999999999874 788999999999999999999999999999999964322 45667888776653
No 311
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.27 E-value=0.019 Score=50.00 Aligned_cols=40 Identities=20% Similarity=0.440 Sum_probs=25.1
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
....+||+|||+.+.. +-...+.+....-+.+..+++.|-
T Consensus 108 ~~~kviiidead~mt~--~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE--DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH--HHHHHHHHHhccCCCCeEEEEEcC
Confidence 5678899999998854 333445555555555554555443
No 312
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.032 Score=51.84 Aligned_cols=39 Identities=10% Similarity=0.260 Sum_probs=23.6
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
...+++||||+|.+.. .. ...+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~-~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSK-SA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCH-HH-HHHHHHHHhCCCCCEEEEEEe
Confidence 4578899999998854 22 223444444444455566555
No 313
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.26 E-value=0.011 Score=46.93 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=16.0
Q ss_pred CcEEEEccCCCccchHhHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~ 33 (356)
+.+++.+|+|+|||..+...+
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~ 35 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALA 35 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 457899999999997654433
No 314
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.25 E-value=0.017 Score=48.67 Aligned_cols=54 Identities=9% Similarity=-0.019 Sum_probs=30.3
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCC----CCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
.+++++|+||-|||.+.--..-.+-... ...+.+++-+|...-....+..+-..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~ 119 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEA 119 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHH
Confidence 4689999999999976422221111111 12234556667666555555555443
No 315
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.034 Score=52.10 Aligned_cols=21 Identities=19% Similarity=0.244 Sum_probs=16.0
Q ss_pred CcEEEEccCCCccchHhHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~ 33 (356)
+..|++||.|+|||.++-..+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 447889999999997754443
No 316
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.24 E-value=0.0087 Score=49.20 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=33.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|..++|.+|+|+|||...+-.+...+.. +. +++|++-. +-.+++.++++.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge---~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGE---KVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS-S-HHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC---cEEEEEec-CCHHHHHHHHHHc
Confidence 5678999999999997766555555544 33 67888743 3346666666544
No 317
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.21 E-value=0.05 Score=46.03 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=16.8
Q ss_pred cEEEEccCCCccchHhHHHhhcCc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQT 37 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~ 37 (356)
.++++||+|+|||+... .+...+
T Consensus 45 ~~~l~G~~G~GKTtl~~-~l~~~l 67 (269)
T TIGR03015 45 FILITGEVGAGKTTLIR-NLLKRL 67 (269)
T ss_pred EEEEEcCCCCCHHHHHH-HHHHhc
Confidence 57899999999997644 334443
No 318
>PRK04195 replication factor C large subunit; Provisional
Probab=96.18 E-value=0.022 Score=52.50 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4678999999999997643
No 319
>PRK10867 signal recognition particle protein; Provisional
Probab=96.17 E-value=0.057 Score=48.60 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=22.1
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 50 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~ 50 (356)
-+++++++|+|||++....+........ . +++++.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G-~-kV~lV~ 136 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKK-K-KVLLVA 136 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcC-C-cEEEEE
Confidence 3678999999999876655554333311 1 455554
No 320
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.14 E-value=0.04 Score=53.08 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.1
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
.+++++||+|+|||..+.
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 368999999999997643
No 321
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.022 Score=49.87 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=26.0
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
...+++||||+|.+.. .-...+.+.+..-+....++++|..+
T Consensus 140 g~~rVviIDeAd~l~~--~aanaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 140 GNWRIVIIDPADDMNR--NAANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred CCceEEEEEchhhcCH--HHHHHHHHHHhcCCCCceEEEEECCh
Confidence 4677899999998854 22334555555544555566665443
No 322
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=96.10 E-value=0.067 Score=49.34 Aligned_cols=128 Identities=13% Similarity=0.183 Sum_probs=76.0
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHH-HHhccCCCceEEEEEcCcchHHhHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE-RFSTYLPDIKVAVFYGGVNIKIHKDL 90 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (356)
-|..+.--|=--|||.. +.+++..+..+-.+.++.|+++.+-.++-+.+++. +...++|.-.+....++
T Consensus 202 QkaTVFLVPRRHGKTWf-~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~--------- 271 (668)
T PHA03372 202 QKATVFLVPRRHGKTWF-IIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDN--------- 271 (668)
T ss_pred ccceEEEecccCCceeh-HHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCc---------
Confidence 34456667889999976 44555444444445589999999988888777776 34444443333322221
Q ss_pred HhcCCCcEEEechH-----HHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCC-CCCcEEEEEec
Q 018420 91 LKNECPQIVVGTPG-----RILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSAT 160 (356)
Q Consensus 91 ~~~~~~~i~v~T~~-----~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT 160 (356)
.|.+.-|. .+..-...+.+.-+.+++++|||||=+. ...+..++..+. .++++|+.|.|
T Consensus 272 ------tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~-----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 272 ------VISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK-----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred ------EEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC-----HHHHHHhhhhhcccCceEEEEeCC
Confidence 23333221 1111122334456678999999999442 234444444433 57889999888
No 323
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.10 E-value=0.089 Score=48.72 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=64.2
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC-CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEec
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD 293 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~ 293 (356)
.++++++.+|++..+.++++.|++. +..+..+||+++..+|.+.+....+|+.+|+|+|...-. ..+++++.+|+-+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 3568999999999999999999865 778899999999999999999999999999999964322 3566787777655
No 324
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.09 E-value=0.019 Score=51.60 Aligned_cols=141 Identities=13% Similarity=0.190 Sum_probs=73.7
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH-HHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHh
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE-LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK 92 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~-l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 92 (356)
-.++.++.|||||.+....++..+...+.+.+++++-++.. +...+..++......+ ++....-......... ..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~---~~ 78 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIK---IL 78 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEE---ec
Confidence 35789999999998877666655555312237888878766 6666777777665544 3321111111100000 01
Q ss_pred cCCCcEEEech-HHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccchH
Q 018420 93 NECPQIVVGTP-GRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 166 (356)
Q Consensus 93 ~~~~~i~v~T~-~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 166 (356)
.....|++..- +....+ .....++++.+|||..+.. ..+.....++.. +.....+++|.||.....
T Consensus 79 ~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~-~~~~~l~~rlr~--~~~~~~i~~t~NP~~~~~ 145 (396)
T TIGR01547 79 NTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTF-EDIKELIPRLRE--TGGKKFIIFSSNPESPLH 145 (396)
T ss_pred CCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcCH-HHHHHHHHHhhc--cCCccEEEEEcCcCCCcc
Confidence 10124444332 111111 1223368899999998844 223333333211 122225889999876433
No 325
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.08 E-value=0.04 Score=42.09 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=71.2
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHH-HHHHHHHHhccCCCceEEEEEcCc-----chHHh
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ-ICHEFERFSTYLPDIKVAVFYGGV-----NIKIH 87 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q-~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~ 87 (356)
-+.|..++|.|||.+++..++..+..+. +++++-=.+.-..+ -...++++ +++.....-.+. +....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~---~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGY---RVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCCCChHHH
Confidence 3567889999999998888888877655 56663221210000 01112222 333333321111 11111
Q ss_pred HHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccc--hhHHHHHHhhCCCCCcEEEEEecCccch
Q 018420 88 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDM--RRDVQEIFKMTPHDKQVMMFSATLSKEI 165 (356)
Q Consensus 88 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~--~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 165 (356)
.... ...+... ...+....+++||+||+-.... .++ ...+..+++..++...+|+.+..+++.+
T Consensus 77 ~~~a------------~~~~~~a-~~~~~~~~~dLlVLDEi~~a~~-~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l 142 (159)
T cd00561 77 IAAA------------AEGWAFA-KEAIASGEYDLVILDEINYALG-YGLLDVEEVVDLLKAKPEDLELVLTGRNAPKEL 142 (159)
T ss_pred HHHH------------HHHHHHH-HHHHhcCCCCEEEEechHhHhh-CCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 1100 0111111 1122345789999999998754 333 3456777777777777888777777665
Q ss_pred HHH
Q 018420 166 RPV 168 (356)
Q Consensus 166 ~~~ 168 (356)
.+.
T Consensus 143 ~e~ 145 (159)
T cd00561 143 IEA 145 (159)
T ss_pred HHh
Confidence 444
No 326
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.07 E-value=0.011 Score=48.85 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=33.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
+.-+++.+++|+|||......+...+..+. +++|+.-... .++..+++.++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~---~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGK---KVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCC---EEEEEEcCCC-HHHHHHHHHHC
Confidence 456789999999999776555555444322 6788775433 45566655554
No 327
>PHA00729 NTP-binding motif containing protein
Probab=96.05 E-value=0.054 Score=43.88 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
.++++.|++|+|||..+.
T Consensus 18 ~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 478999999999996543
No 328
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.04 E-value=0.006 Score=59.35 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=54.1
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-CCCeeEEEEcCchHHHHHHHHHHHHHhcc-CCCceEEEEE
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~vlii~P~~~l~~q~~~~~~~~~~~-~~~~~v~~~~ 79 (356)
|.+|+.+ ....++|.|++|||||.+....+...+... -.+.+++.++-|+..+..+.+++.++.+. ..++.+.++|
T Consensus 9 Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~~~~~~i~TFH 86 (726)
T TIGR01073 9 QREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGPVAEDIWISTFH 86 (726)
T ss_pred HHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhccccCCcEEEcHH
Confidence 5556543 246799999999999988777666655432 22337999999999899999998877543 2245566555
Q ss_pred c
Q 018420 80 G 80 (356)
Q Consensus 80 ~ 80 (356)
+
T Consensus 87 s 87 (726)
T TIGR01073 87 S 87 (726)
T ss_pred H
Confidence 3
No 329
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.02 E-value=0.06 Score=48.68 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.1
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
.+++++||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999997653
No 330
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.97 E-value=0.012 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=17.5
Q ss_pred CcEEEEccCCCccchHhHHHhhc
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQ 35 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~ 35 (356)
-++++.+|+|+|||++....+-.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHH
Confidence 36899999999999885444433
No 331
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.96 E-value=0.012 Score=50.44 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=30.9
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHH
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 55 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l 55 (356)
..+++++++||||||||.. +.+++..+...+...+++.+=...++
T Consensus 130 ~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 130 LARKNILVVGGTGSGKTTL-ANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HcCCeEEEECCCCCCHHHH-HHHHHHHhhccCCCceEEEECCchhh
Confidence 3467899999999999976 45566666543222367776666654
No 332
>PRK08116 hypothetical protein; Validated
Probab=95.95 E-value=0.036 Score=46.72 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=25.0
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHH
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 60 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~ 60 (356)
.++++|++|+|||..+. ++...+.... . .++++ +...+...+.
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~~-~-~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEKG-V-PVIFV-NFPQLLNRIK 158 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHcC-C-eEEEE-EHHHHHHHHH
Confidence 48999999999996643 4444443322 2 45444 3445554443
No 333
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.95 E-value=0.023 Score=50.02 Aligned_cols=30 Identities=23% Similarity=0.151 Sum_probs=22.1
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcCCC
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPN 40 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~ 40 (356)
-.|+.++|.+|+|+|||.. +..+...+..+
T Consensus 166 g~Gq~~~IvG~~g~GKTtL-~~~i~~~I~~n 195 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL-LQKIAQAITRN 195 (415)
T ss_pred CCCCEEEEECCCCCChhHH-HHHHHHhhccc
Confidence 4588899999999999976 44455555444
No 334
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.038 Score=52.24 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=16.1
Q ss_pred CcEEEEccCCCccchHhHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~ 33 (356)
+.+|++||+|+|||.++...+
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346899999999997754443
No 335
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.94 E-value=0.16 Score=43.91 Aligned_cols=47 Identities=11% Similarity=0.362 Sum_probs=29.1
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhC------CCCCcEEEEEecCccc
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMT------PHDKQVMMFSATLSKE 164 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~------~~~~~~i~~SaT~~~~ 164 (356)
.++++|+||=+-+..........+.++.... .+...++.++||...+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~ 247 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN 247 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH
Confidence 5678899999987654333344555554322 2333578888886554
No 336
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.043 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=16.9
Q ss_pred CcEEEEccCCCccchHhHHHhh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTL 34 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~ 34 (356)
+.+|++||.|+|||..+...+.
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999977654433
No 337
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.041 Score=52.12 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=17.4
Q ss_pred CcEEEEccCCCccchHhHHHhhc
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQ 35 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~ 35 (356)
+.+|++||.|+|||..+...+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHH
Confidence 56799999999999775544433
No 338
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.90 E-value=0.01 Score=51.65 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=29.6
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 55 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l 55 (356)
.+++++|+||||||||+. +-+++..+.... +++.+=...+|
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i~~~~---rivtiEd~~El 201 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAIPPQE---RLITIEDTLEL 201 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHcccCCCC---CEEEECCCccc
Confidence 478999999999999966 556666665432 56666666654
No 339
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.87 E-value=0.42 Score=37.51 Aligned_cols=53 Identities=4% Similarity=-0.062 Sum_probs=33.7
Q ss_pred cEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccchHHHHHhhc
Q 018420 121 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 173 (356)
Q Consensus 121 ~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 173 (356)
+++||--.+....-..-...+.+-.+..++.++++++++.-......++.+..
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~ 197 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIE 197 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHH
Confidence 44555444443321112355666667777889999999998888777766543
No 340
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.85 E-value=0.082 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=18.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQ 35 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~ 35 (356)
++.+++.||+|+|||++....+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 556789999999999886554433
No 341
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.85 E-value=0.011 Score=50.97 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=29.6
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHH
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 55 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l 55 (356)
..+++++++|+||||||.. +-+++..+...+...+++.+=...+|
T Consensus 142 ~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCccc
Confidence 3467899999999999976 45555555333223366666555554
No 342
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.83 E-value=0.063 Score=47.86 Aligned_cols=41 Identities=10% Similarity=0.260 Sum_probs=24.0
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
.+.+++||||+|.+.. .....+.+.+..-+++..+|+.|.+
T Consensus 116 ~~~kViiIDead~m~~--~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTE--RAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCH--HHHHHHHHHhhcCCCCCeEEEEECC
Confidence 4667899999999854 2223344455544444444444444
No 343
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.081 Score=41.41 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=58.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 91 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 91 (356)
++-.++++|+.||||...+-.+.+....+. ++++..|...-.- +......+.|...
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~---~v~vfkp~iD~R~--------------~~~~V~Sr~G~~~------- 59 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGM---KVLVFKPAIDTRY--------------GVGKVSSRIGLSS------- 59 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCC---eEEEEeccccccc--------------ccceeeeccCCcc-------
Confidence 344689999999999875544444444333 6888888643111 1111221222111
Q ss_pred hcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhh
Q 018420 92 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 147 (356)
Q Consensus 92 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~ 147 (356)
.-+.|-....+...+....... ..++|.||||+=+.. .....+.++.+.
T Consensus 60 ----~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~--~~v~~l~~lad~ 108 (201)
T COG1435 60 ----EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFDE--ELVYVLNELADR 108 (201)
T ss_pred ----cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCCH--HHHHHHHHHHhh
Confidence 2455556666666555433222 278899999995532 444455555544
No 344
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.78 E-value=0.14 Score=48.18 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=39.4
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 68 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~ 68 (356)
.+-.++.+|=|.|||.+..+.+...+... +.+|+|.+|...-++++.+.++....
T Consensus 187 q~~tV~taPRqrGKS~iVgi~l~~La~f~--Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 187 KCYTAATVPRRCGKTTIMAIILAAMISFL--EIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred hcceEEEeccCCCcHHHHHHHHHHHHHhc--CCeEEEECCChhhHHHHHHHHHHHHH
Confidence 44568899999999976543333222211 23899999999989998888877765
No 345
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=95.78 E-value=0.038 Score=52.83 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=65.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-ccccCCCCCCCCEEE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 290 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-~~~~G~d~~~~~~vi 290 (356)
.+.++++.+|+...|.+.++.+.+. +.++..++|+++..++...++...+|+.+|+|+|. .+...+++.++..+|
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 4568999999999999988777653 68899999999999999999999999999999995 455677888888887
Q ss_pred Eec
Q 018420 291 NYD 293 (356)
Q Consensus 291 ~~~ 293 (356)
+-.
T Consensus 363 IDE 365 (630)
T TIGR00643 363 IDE 365 (630)
T ss_pred Eec
Confidence 544
No 346
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.77 E-value=0.029 Score=60.07 Aligned_cols=56 Identities=29% Similarity=0.295 Sum_probs=37.2
Q ss_pred ccccHhhHhcC--CcEEEEccCCCccchHhH---HHhhcCcCCCCCCeeEEEEcCchHHHHHH
Q 018420 2 QHECIPQAILG--MDVICQAKSGMGKTAVFV---LSTLQQTEPNPGQVTALVLCHTRELAYQI 59 (356)
Q Consensus 2 Q~~~~~~~~~~--~~~li~~~tGsGKT~~~~---~~~~~~~~~~~~~~~vlii~P~~~l~~q~ 59 (356)
|++|+..++.+ +-++|.++.|+|||.+.. -++...+... +.+++.+.|+-.-+..+
T Consensus 1024 Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~--g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1024 QKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESE--QLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHH
Confidence 78899998865 456789999999997641 2232322222 22688889987655544
No 347
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.76 E-value=0.013 Score=50.27 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=29.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 58 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q 58 (356)
|.-+.|.+|+|+|||..++..+......+. +++|+-.-.++-.+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~---~v~yId~E~~~~~~ 98 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGG---TAAFIDAEHALDPV 98 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC---cEEEEcccchhHHH
Confidence 456789999999999876655555544322 67888665554443
No 348
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.76 E-value=0.036 Score=50.25 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=57.7
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHhH--
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHK-- 88 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~-- 88 (356)
|.-++|.|+||+|||...+-.+........ . +++|++. -.-.+|+..++-.... ++....+. |..+...+.
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g-~-~v~~fSl-Em~~~~l~~Rl~~~~~---~v~~~~~~~~~l~~~~~~~~ 267 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREG-K-PVLFFSL-EMSAEQLGERLLASKS---GINTGNIRTGRFNDSDFNRL 267 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCC-C-cEEEEEC-CCCHHHHHHHHHHHHc---CCCHHHHhcCCCCHHHHHHH
Confidence 556789999999999765555444432221 1 5777763 3345556555543332 22222222 221211111
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 89 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 89 ----~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
..+... .+.|. |.+.+....++-......+++||||-.|.+..
T Consensus 268 ~~~~~~l~~~--~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 268 LNAVDRLSEK--DLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHhcC--CEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 122222 34443 34455443332211122578999999998864
No 349
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.75 E-value=0.089 Score=41.13 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=15.8
Q ss_pred EEEEccCCCccchHhHHHhhc
Q 018420 15 VICQAKSGMGKTAVFVLSTLQ 35 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~ 35 (356)
+++.+++|+|||......+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999775544433
No 350
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.12 Score=46.06 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=31.3
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCC---CCCcEEEEEecCcc-chHHHHHhh
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTP---HDKQVMMFSATLSK-EIRPVCKKF 172 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~---~~~~~i~~SaT~~~-~~~~~~~~~ 172 (356)
.+.++|+||=+............+..+..... +...++.++||... ........+
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f 356 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 46788999976654322333445555554432 22457888999876 334444433
No 351
>PTZ00293 thymidine kinase; Provisional
Probab=95.75 E-value=0.015 Score=46.53 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCch
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 53 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~ 53 (356)
|.-.++.+|++||||.-.+-.+.+....+. +++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~---kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEK---KCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCC---ceEEEEecc
Confidence 455689999999999764444444433332 678888865
No 352
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.74 E-value=0.025 Score=49.95 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=32.1
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|.-+++.+++|+|||...+..+......+ .+++|+... +-..|+..+.+++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECC-cCHHHHHHHHHHc
Confidence 45578999999999976554444333322 278888764 3345665555444
No 353
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.73 E-value=0.0054 Score=50.71 Aligned_cols=16 Identities=19% Similarity=0.518 Sum_probs=13.1
Q ss_pred EEEEccCCCccchHhH
Q 018420 15 VICQAKSGMGKTAVFV 30 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~ 30 (356)
++|.|++|+|||....
T Consensus 1 ~vv~G~pGsGKSt~i~ 16 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIK 16 (234)
T ss_pred CEEEcCCCCCHHHHHH
Confidence 4789999999997643
No 354
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.72 E-value=0.023 Score=51.65 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=32.8
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
+.-+++.+++|+|||+..+..+...... +.+++|+.-. +-..|+..+.+++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcc-ccHHHHHHHHHHc
Confidence 4557899999999997655444433322 2278888854 4456666655554
No 355
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.70 E-value=0.058 Score=47.72 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
+.++++||+|+|||..+.
T Consensus 37 ~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999997653
No 356
>PRK08506 replicative DNA helicase; Provisional
Probab=95.67 E-value=0.048 Score=50.02 Aligned_cols=113 Identities=17% Similarity=0.143 Sum_probs=60.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHhH--
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHK-- 88 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~-- 88 (356)
|.-++|.|.||.|||..++-.+......+ .++++++.- .-..|+..++-...... ....+ .|..+...+.
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g---~~V~~fSlE-Ms~~ql~~Rlla~~s~v---~~~~i~~~~l~~~e~~~~ 264 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQD---KGVAFFSLE-MPAEQLMLRMLSAKTSI---PLQNLRTGDLDDDEWERL 264 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcC---CcEEEEeCc-CCHHHHHHHHHHHhcCC---CHHHHhcCCCCHHHHHHH
Confidence 45578899999999977665555544322 257777643 45677777665443322 22111 1222222221
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 89 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 89 ----~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
..+... .+.|. |++.+....++-......+++||||-.+.+..
T Consensus 265 ~~a~~~l~~~--~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 265 SDACDELSKK--KLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HHHHHHHHcC--CeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 112222 34442 45555544432211123578999999998864
No 357
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.67 E-value=0.024 Score=47.68 Aligned_cols=115 Identities=15% Similarity=0.091 Sum_probs=60.8
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCc-chHHhH--
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV-NIKIHK-- 88 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~-- 88 (356)
|.-++|.|.||.|||..++-.+........ .+|+|++.-. -.+++..++-...... ....+..+. ...++.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~--~~vly~SlEm-~~~~l~~R~la~~s~v---~~~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG--YPVLYFSLEM-SEEELAARLLARLSGV---PYNKIRSGDLSDEEFERL 92 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS--SEEEEEESSS--HHHHHHHHHHHHHTS---THHHHHCCGCHHHHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC--CeEEEEcCCC-CHHHHHHHHHHHhhcc---hhhhhhccccCHHHHHHH
Confidence 445789999999999876666665554432 2688888643 2445555554433322 111111121 111111
Q ss_pred ----HHHhcCCCcEEE-e----chHHHHHHHhcCCcccCCccEEEEecccccccc
Q 018420 89 ----DLLKNECPQIVV-G----TPGRILALARDKDLSLKNVRHFILDECDKMLES 134 (356)
Q Consensus 89 ----~~~~~~~~~i~v-~----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~ 134 (356)
..+... .+++ . |++.+....+.-.....++++||||-.|.+...
T Consensus 93 ~~~~~~l~~~--~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 93 QAAAEKLSDL--PLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHTS--EEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHhhC--cEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCC
Confidence 112222 3433 2 444555544432222257789999999998763
No 358
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.65 E-value=0.0089 Score=49.83 Aligned_cols=33 Identities=12% Similarity=0.360 Sum_probs=24.4
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEE
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 49 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii 49 (356)
++|.+|||||||++ +.++++.+.++... .++-+
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~~~-HIlTI 160 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHKAK-HILTI 160 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccCCc-ceEEe
Confidence 68899999999987 67777877766544 34433
No 359
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.63 E-value=0.055 Score=51.84 Aligned_cols=61 Identities=28% Similarity=0.437 Sum_probs=44.7
Q ss_pred ccccHhhHhc----C-CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhc
Q 018420 2 QHECIPQAIL----G-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 68 (356)
Q Consensus 2 Q~~~~~~~~~----~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~ 68 (356)
|.+++..+.+ + +..++.+.+|+|||+.+. .+..... . .+++|+|+...+.|+++.++.+..
T Consensus 17 Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~~----r-~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 17 QPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARLQ----R-PTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred HHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHhC----C-CEEEEECCHHHHHHHHHHHHHhcC
Confidence 5666666643 2 256799999999997743 3333221 1 699999999999999999988864
No 360
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.62 E-value=0.081 Score=49.36 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=65.6
Q ss_pred CCCeEEEEecchhhHH----HHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEc-CccccCCCCCCCCEEE
Q 018420 216 DFNQVVIFVKSVSRAA----ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDIERVNIVI 290 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t-~~~~~G~d~~~~~~vi 290 (356)
.+..+.+..|+.=-|+ .+.+.|...|+.+.++.|.+....|+++++...+|+++++|+| ..+.+.+++.++..||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 4567888999955554 4555666679999999999999999999999999999999999 5678999999999888
Q ss_pred Eec
Q 018420 291 NYD 293 (356)
Q Consensus 291 ~~~ 293 (356)
+-.
T Consensus 390 iDE 392 (677)
T COG1200 390 IDE 392 (677)
T ss_pred Eec
Confidence 543
No 361
>PRK09354 recA recombinase A; Provisional
Probab=95.60 E-value=0.017 Score=50.09 Aligned_cols=44 Identities=18% Similarity=0.106 Sum_probs=31.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 58 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q 58 (356)
|.-+.|.+|+|+|||..++..+......+. +++|+-.-.++-..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~---~~~yId~E~s~~~~ 103 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGG---TAAFIDAEHALDPV 103 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC---cEEEECCccchHHH
Confidence 456789999999999887766655554332 68888876665543
No 362
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.58 E-value=0.07 Score=49.94 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=16.6
Q ss_pred CcEEEEccCCCccchHhHHHhh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTL 34 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~ 34 (356)
+.++++||.|+|||.++...+.
T Consensus 39 hayLf~Gp~G~GKTt~Ar~lAk 60 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARAFAR 60 (563)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999977544333
No 363
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.58 E-value=0.06 Score=50.31 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=76.6
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccC-CCceEEEEEcCcchHHhHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYL-PDIKVAVFYGGVNIKIHKD 89 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 89 (356)
+-+-.++..|=-.|||.+.. +++..+...-.+.+++|.+|.+...+...+++......+ +...+....| +....
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I~i--- 327 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETISF--- 327 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEEEE---
Confidence 34567889999999998654 333322222112289999999999999999998765532 2222333333 11100
Q ss_pred HHhcCC-CcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 90 LLKNEC-PQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 90 ~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
...++. +.|.+.+- ...+...-..++++|||||+-+.. .-+...+ -+.. ..++++|++|.|-
T Consensus 328 ~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~-~al~~il-p~l~--~~n~k~I~ISS~N 390 (738)
T PHA03368 328 SFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRP-DAVQTIM-GFLN--QTNCKIIFVSSTN 390 (738)
T ss_pred EecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCH-HHHHHHH-HHHh--ccCccEEEEecCC
Confidence 011111 24444321 112223445789999999997754 2222222 2222 2378899999883
No 364
>PHA02533 17 large terminase protein; Provisional
Probab=95.58 E-value=0.042 Score=51.00 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=48.3
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 71 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~ 71 (356)
|++.+..+..++-.++..+=..|||.+....++......++. .+++++|+..-+....+.++.+....|
T Consensus 64 Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~-~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 64 QKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDK-NVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred HHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 667777665566668889999999977654443322223333 799999999888888888877665544
No 365
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.57 E-value=0.091 Score=45.62 Aligned_cols=41 Identities=10% Similarity=0.248 Sum_probs=25.9
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
...+++|+|++|.+.. .....+.+.....+....+|++|-.
T Consensus 112 ~~~kV~iiEp~~~Ld~--~a~naLLk~LEep~~~~~~Ilvth~ 152 (325)
T PRK08699 112 GGLRVILIHPAESMNL--QAANSLLKVLEEPPPQVVFLLVSHA 152 (325)
T ss_pred CCceEEEEechhhCCH--HHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 5678899999998843 4445555566655555545554444
No 366
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.068 Score=49.12 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=15.7
Q ss_pred cEEEEccCCCccchHhHHHhh
Q 018420 14 DVICQAKSGMGKTAVFVLSTL 34 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~ 34 (356)
..+++||+|+|||.++...+.
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk 60 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAK 60 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 357899999999977654433
No 367
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.56 E-value=0.0094 Score=46.81 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=26.8
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHH
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 59 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~ 59 (356)
.+++++++.||+|+|||..+...+...+..+. .++++ +..+|.+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~---~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGY---SVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCc---ceeEe-ecCceeccc
Confidence 34788999999999999765544444444322 45554 445555553
No 368
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.54 E-value=0.015 Score=48.15 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=34.8
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|..++|.+|+|+|||..++-.+...+..+. +++|++- .+-.+|..+++..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge---~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCC---cEEEEEe-eCCHHHHHHHHHHh
Confidence 567899999999999876655555443332 6788874 44566666666554
No 369
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.49 E-value=0.036 Score=49.64 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=21.6
Q ss_pred ccHhhHhcCCcEEEEccCCCccchHhH
Q 018420 4 ECIPQAILGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 4 ~~~~~~~~~~~~li~~~tGsGKT~~~~ 30 (356)
..+..+..++++++.+|+|+|||..+.
T Consensus 186 ~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 186 TILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 345566678999999999999997654
No 370
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.44 E-value=0.064 Score=51.20 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=16.0
Q ss_pred CcEEEEccCCCccchHhHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~ 33 (356)
+.+|++||.|+|||.++...+
T Consensus 41 HAYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 346899999999997764443
No 371
>PF05729 NACHT: NACHT domain
Probab=95.43 E-value=0.098 Score=40.34 Aligned_cols=20 Identities=15% Similarity=0.229 Sum_probs=15.2
Q ss_pred cEEEEccCCCccchHhHHHh
Q 018420 14 DVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~ 33 (356)
-++|.|++|+|||......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~ 21 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLA 21 (166)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 36899999999997654333
No 372
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=95.43 E-value=0.0053 Score=52.09 Aligned_cols=49 Identities=14% Similarity=0.014 Sum_probs=36.9
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 51 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P 51 (356)
|..-++++.+..-++-.+|.|+|||..+...+...+..+.-. +++.-=|
T Consensus 133 Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~-rIiLtRP 181 (348)
T COG1702 133 QNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVR-RIILTRP 181 (348)
T ss_pred HHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccc-eeeecCc
Confidence 666677777777788899999999988777777777766544 5665555
No 373
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.42 E-value=0.16 Score=45.70 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=17.2
Q ss_pred cEEEEccCCCccchHhHHHhhc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQ 35 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~ 35 (356)
.+++++++|+|||++....+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999886655544
No 374
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.41 E-value=0.019 Score=49.86 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=27.6
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
.+++++++|+||||||.. +-+++..+.... +++.+=.+.+
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip~~~---ri~tiEd~~E 198 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIPAIE---RLITVEDARE 198 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCCCCC---eEEEecCCCc
Confidence 478999999999999976 456666665432 5655433333
No 375
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.41 E-value=0.09 Score=45.22 Aligned_cols=19 Identities=16% Similarity=0.224 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
++.+++.||+|+|||..+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578999999999996643
No 376
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.41 E-value=0.04 Score=48.97 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
.+++|.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57899999999999664
No 377
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.37 E-value=0.031 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=18.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQT 37 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~ 37 (356)
++.++|.||.|+|||.. +..+....
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 46789999999999975 44444444
No 378
>PRK07004 replicative DNA helicase; Provisional
Probab=95.36 E-value=0.048 Score=49.82 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=58.0
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHhH--
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHK-- 88 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~-- 88 (356)
|.-++|.|.||+|||..++-.+....... +. .+++++. ..-..|+..++-..... +....+ .|..+..++.
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~~-~~-~v~~fSl-EM~~~ql~~R~la~~~~---v~~~~i~~g~l~~~e~~~~ 286 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVEY-GL-PVAVFSM-EMPGTQLAMRMLGSVGR---LDQHRMRTGRLTDEDWPKL 286 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHc-CC-eEEEEeC-CCCHHHHHHHHHHhhcC---CCHHHHhcCCCCHHHHHHH
Confidence 55578999999999976554433332211 11 5666653 34466676665433322 222212 2222222222
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 89 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 89 ----~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
..+.. ..+.|. |+..+....++-......+++||||-.|.+..
T Consensus 287 ~~a~~~l~~--~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 287 THAVQKMSE--AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 22222 245553 44455443332211123578999999998863
No 379
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.34 E-value=0.071 Score=52.87 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=65.5
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-ccccCCCCCCCCEEE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 290 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-~~~~G~d~~~~~~vi 290 (356)
.+.++++.+|+...|.+.++.+++. +.++..+++..+..++.+.++.+++|+.+|+|+|. .+...+.+.++..+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999998887764 56777899999999999999999999999999995 555677888888887
Q ss_pred Eec
Q 018420 291 NYD 293 (356)
Q Consensus 291 ~~~ 293 (356)
+-.
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 543
No 380
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.33 E-value=0.02 Score=49.41 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=29.5
Q ss_pred HhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHH
Q 018420 9 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 55 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l 55 (356)
+..++++++.|+||||||.. +-+++......+...+++.+=.+.++
T Consensus 145 v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 145 VRAHRNILVIGGTGSGKTTL-VNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 34578899999999999955 44444443222222367776666654
No 381
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.13 Score=43.53 Aligned_cols=67 Identities=15% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcC--CCCC-CeeEEEEcC-----------chHHHHHHHHHHHHHhccCCCceEEE
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTE--PNPG-QVTALVLCH-----------TRELAYQICHEFERFSTYLPDIKVAV 77 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~--~~~~-~~~vlii~P-----------~~~l~~q~~~~~~~~~~~~~~~~v~~ 77 (356)
++-++++||+|+|||.. +.++.+.+. .... ..-.++=.. +--|+.++++.+.++.... +.-|..
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~-~~lVfv 254 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDR-GNLVFV 254 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CcEEEE
Confidence 44578999999999954 344443322 1111 112233333 3345666667777777664 444555
Q ss_pred EEc
Q 018420 78 FYG 80 (356)
Q Consensus 78 ~~~ 80 (356)
+..
T Consensus 255 LID 257 (423)
T KOG0744|consen 255 LID 257 (423)
T ss_pred EeH
Confidence 443
No 382
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.26 E-value=0.047 Score=45.32 Aligned_cols=32 Identities=22% Similarity=0.141 Sum_probs=23.2
Q ss_pred hHhcCCcEEEEccCCCccchHhHHHhhcCcCCC
Q 018420 8 QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN 40 (356)
Q Consensus 8 ~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~ 40 (356)
.+.+|+.+++.+|.|+|||.. +-.+.+.....
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~~~ 43 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTL-LQSIANAITKN 43 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHH-HHHHHhccccc
Confidence 345689999999999999965 44555555443
No 383
>PRK06904 replicative DNA helicase; Validated
Probab=95.25 E-value=0.086 Score=48.31 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=59.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC--cchHHhHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG--VNIKIHKD 89 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~ 89 (356)
|.-++|-|.||.|||..++-.+....... +. ++++++.- .-.+|+..++-..... +....+..+ .+..++..
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~~-g~-~Vl~fSlE-Ms~~ql~~Rlla~~s~---v~~~~i~~g~~l~~~e~~~ 294 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMAS-EK-PVLVFSLE-MPAEQIMMRMLASLSR---VDQTKIRTGQNLDQQDWAK 294 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhc-CC-eEEEEecc-CCHHHHHHHHHHhhCC---CCHHHhccCCCCCHHHHHH
Confidence 45578899999999976543333332211 11 57777653 5577777766554433 222222222 22222221
Q ss_pred ------HHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 90 ------LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 90 ------~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
.+... +.+.|. |++.+....++.......+++||||-.|.+..
T Consensus 295 ~~~a~~~l~~~-~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 295 ISSTVGMFKQK-PNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHhcC-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 12122 346553 55566544432211123578999999998853
No 384
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.21 E-value=0.031 Score=51.11 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=37.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCC---CCeeEEEEcCchHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTRELAYQICHEF 63 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~---~~~~vlii~P~~~l~~q~~~~~ 63 (356)
++-++|.|..|||||.+++..+.-.+.... +...|+++.|.+.+.+-....+
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VL 280 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVL 280 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhc
Confidence 566899999999999988765554433221 2224999999998887766544
No 385
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.19 E-value=0.031 Score=49.05 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=22.2
Q ss_pred hHhcCCcEEEEccCCCccchHhHHHhhcCcCC
Q 018420 8 QAILGMDVICQAKSGMGKTAVFVLSTLQQTEP 39 (356)
Q Consensus 8 ~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~ 39 (356)
.+-+|+..+|.+|+|+|||.. +..+...+..
T Consensus 165 PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 165 PIGKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred ccccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 345689999999999999965 3444544443
No 386
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.18 E-value=0.15 Score=44.48 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=24.9
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
...+++|||++|.+.. .-...+.+.+..-+++..+|++|..
T Consensus 131 ~~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 131 GGARVVVLYPAEALNV--AAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred CCceEEEEechhhcCH--HHHHHHHHHhcCCCcCcEEEEEECC
Confidence 5678899999999854 3334455555544444444444444
No 387
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.16 E-value=0.44 Score=40.80 Aligned_cols=129 Identities=13% Similarity=0.234 Sum_probs=69.3
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC--chH-HHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH--TRE-LAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 90 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P--~~~-l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (356)
.+++++..|+|||++..-.+.....++. +|++... .|+ -++|+ +.+.... +..+..-..|...
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~---~VllaA~DTFRAaAiEQL----~~w~er~-gv~vI~~~~G~Dp------ 206 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGK---SVLLAAGDTFRAAAIEQL----EVWGERL-GVPVISGKEGADP------ 206 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCC---eEEEEecchHHHHHHHHH----HHHHHHh-CCeEEccCCCCCc------
Confidence 3678999999999886544444444333 5555553 222 23443 3333322 5554432111110
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCC------cEEEEEecCccc
Q 018420 91 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK------QVMMFSATLSKE 164 (356)
Q Consensus 91 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~------~~i~~SaT~~~~ 164 (356)
+.|. +..+... .-+++|+|++|=|-++=+..+....+.++.....+.. .++.+=||...+
T Consensus 207 -----AaVa-------fDAi~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 207 -----AAVA-------FDAIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred -----HHHH-------HHHHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 0111 1111111 2367888999999998665666666777766655433 244447887766
Q ss_pred hHHHHH
Q 018420 165 IRPVCK 170 (356)
Q Consensus 165 ~~~~~~ 170 (356)
.-..++
T Consensus 273 al~QAk 278 (340)
T COG0552 273 ALSQAK 278 (340)
T ss_pred HHHHHH
Confidence 443333
No 388
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.16 E-value=0.079 Score=48.29 Aligned_cols=113 Identities=15% Similarity=0.079 Sum_probs=57.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHh---
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIH--- 87 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~--- 87 (356)
|.-++|.|+||+|||...+-.+........ .++++++.- .-..|+.+++....... ....+. |......+
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlE-m~~~~i~~R~~~~~~~v---~~~~~~~g~l~~~~~~~~ 268 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLE-MSAEQLAMRMLSSESRV---DSQKLRTGKLSDEDWEKL 268 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCc-CCHHHHHHHHHHHhcCC---CHHHhccCCCCHHHHHHH
Confidence 455789999999999765544444332211 157777643 34566666655444322 221111 21122111
Q ss_pred ---HHHHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 88 ---KDLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 88 ---~~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
...+... .+.+. |++.+...++.-... .++++||||-.+.+..
T Consensus 269 ~~a~~~l~~~--~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 269 TSAAGKLSEA--PLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSG 319 (434)
T ss_pred HHHHHHHhcC--CEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCC
Confidence 1122222 34442 445555443322111 2478999999998753
No 389
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.15 E-value=0.058 Score=42.43 Aligned_cols=143 Identities=14% Similarity=0.119 Sum_probs=72.7
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 90 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (356)
....+.+..++|.|||.+++..++..+..+. +|+++-=.+.-..+ .+...+ ...+++.... .+.......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~~~--GE~~~l-~~l~~v~~~~--~g~~~~~~~-- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAWST--GERNLL-EFGGGVEFHV--MGTGFTWET-- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCCcc--CHHHHH-hcCCCcEEEE--CCCCCcccC--
Confidence 3567899999999999998888888877665 56665422211111 111111 1122333222 111111000
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch--hHHHHHHhhCCCCCcEEEEEecCccchHHH
Q 018420 91 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR--RDVQEIFKMTPHDKQVMMFSATLSKEIRPV 168 (356)
Q Consensus 91 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 168 (356)
.. ..--.......+.... ..+.-..+++||+||+-.... .++. ..+..++...++..-+|+.-..+++.+.+.
T Consensus 91 -~~--~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~-~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 91 -QD--RERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALK-YGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEA 165 (191)
T ss_pred -CC--cHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHH-CCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 00 0000001111111111 122245789999999998876 3433 456667777766666666655566554443
No 390
>PRK09165 replicative DNA helicase; Provisional
Probab=95.14 E-value=0.14 Score=47.35 Aligned_cols=115 Identities=12% Similarity=0.087 Sum_probs=59.4
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC------------CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE-
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN------------PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF- 78 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~------------~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~- 78 (356)
|.-++|.|.||.|||..++-.+....... ..+.+++|++- ..-..|+..++....... ....+
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v---~~~~i~ 292 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEI---SSSKIR 292 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCC---CHHHHh
Confidence 44578999999999976554333322110 11235777754 445677777765544332 22212
Q ss_pred EcCcchHHhHH------HHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 79 YGGVNIKIHKD------LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 79 ~~~~~~~~~~~------~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
.|......+.. .+.. ..+.|. |++.+....++-... .++++||||-.|.+..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~--~~l~I~d~~~~ti~~i~~~ir~l~~~-~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQK--LPLYIDDTPALSISQLRARARRLKRQ-HGLDLLVVDYLQLIRG 355 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhc--CCeEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhccC
Confidence 22222222211 1222 234443 455555444332211 3578999999998853
No 391
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.11 E-value=0.025 Score=47.57 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=37.4
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
.|+.++|.+++|+|||...+-.+...+..+. +++|++- .+...+..+++..+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge---~vlyvs~-~e~~~~l~~~~~~~ 73 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGE---PVLYVST-EESPEELLENARSF 73 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC---cEEEEEe-cCCHHHHHHHHHHc
Confidence 4678999999999999876666666666533 6788774 45566666666654
No 392
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=95.06 E-value=0.13 Score=49.29 Aligned_cols=91 Identities=16% Similarity=0.268 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhC-CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccc
Q 018420 202 LEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 278 (356)
Q Consensus 202 ~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~ 278 (356)
..+.+....++... .++.+|+.+|.+....++.+.++.. |.++..+|+++++.+|.+.+....+|+.+|+|+|..+-
T Consensus 228 SGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl 307 (730)
T COG1198 228 SGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL 307 (730)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh
Confidence 33444444444433 5578999999999999998888876 89999999999999999999999999999999995432
Q ss_pred cCCCCCCCCEEEEec
Q 018420 279 RGIDIERVNIVINYD 293 (356)
Q Consensus 279 ~G~d~~~~~~vi~~~ 293 (356)
. .-++++..+|...
T Consensus 308 F-~Pf~~LGLIIvDE 321 (730)
T COG1198 308 F-LPFKNLGLIIVDE 321 (730)
T ss_pred c-CchhhccEEEEec
Confidence 2 3455677776443
No 393
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.04 E-value=0.084 Score=45.55 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=27.6
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
.+.+++|||++|.+.. .-...+.+.+..-+.+..+|++|..+
T Consensus 112 g~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 112 GIAQVVIVDPADAINR--AACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred CCcEEEEeccHhhhCH--HHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 4678899999998843 33444555666655566566666543
No 394
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.04 E-value=0.037 Score=46.17 Aligned_cols=49 Identities=14% Similarity=0.232 Sum_probs=33.2
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 63 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~ 63 (356)
+++++++.||+|+|||..+...+...+ ..+ .-+++++..+++.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g---~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAG---ISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC---CeEEEEEHHHHHHHHHHHH
Confidence 578999999999999976444333334 221 3455567778888776644
No 395
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.99 E-value=0.078 Score=48.31 Aligned_cols=144 Identities=10% Similarity=-0.042 Sum_probs=75.5
Q ss_pred CccccHhhHhc----------CCcEEEEccCCCccchHhH-HHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhcc
Q 018420 1 MQHECIPQAIL----------GMDVICQAKSGMGKTAVFV-LSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 69 (356)
Q Consensus 1 ~Q~~~~~~~~~----------~~~~li~~~tGsGKT~~~~-~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~ 69 (356)
+|+-++..+.. -+..+|..|=+-|||..+. +.....+.....+..+.+++|+.+-+.+.+..++.....
T Consensus 65 wQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~mv~~ 144 (546)
T COG4626 65 WQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARDMVKR 144 (546)
T ss_pred HHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHHHHHh
Confidence 35556666652 2346899999999996544 222222222233337999999998888888887776654
Q ss_pred CCCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHh--cCCcccCCccEEEEeccccccccccchhHHHHHHhh
Q 018420 70 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALAR--DKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM 147 (356)
Q Consensus 70 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~--~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~ 147 (356)
.++++.. .........|...--......+. ....+-.+..+.|+||.|.+.... ..+..+..-
T Consensus 145 ~~~l~~~------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~---~~~~~~~~g 209 (546)
T COG4626 145 DDDLRDL------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE---DMYSEAKGG 209 (546)
T ss_pred Ccchhhh------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH---HHHHHHHhh
Confidence 4311110 00111100111111111122222 223334456789999999885521 344444333
Q ss_pred CC--CCCcEEEEEe
Q 018420 148 TP--HDKQVMMFSA 159 (356)
Q Consensus 148 ~~--~~~~~i~~Sa 159 (356)
.. ++.+++..|.
T Consensus 210 ~~ar~~~l~~~ITT 223 (546)
T COG4626 210 LGARPEGLVVYITT 223 (546)
T ss_pred hccCcCceEEEEec
Confidence 22 4556777766
No 396
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.95 E-value=0.042 Score=46.10 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 51 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P 51 (356)
|.-++|.+++|+|||...+..+...+..+. +++|++-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge---~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGN---PVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCC---cEEEEEe
Confidence 566899999999999776655555444322 6788773
No 397
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.94 E-value=0.034 Score=45.66 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=27.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC---CCCeeEEEEcCch
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTR 53 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~vlii~P~~ 53 (356)
|+-+.|.+|+|+|||..++..+......+ ....+++|+....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 56678999999999977665554443332 0112678887654
No 398
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.94 E-value=0.099 Score=49.01 Aligned_cols=141 Identities=15% Similarity=0.155 Sum_probs=79.0
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHH-HHHHHHhccCCCceEEEEE---cCcchHHhH
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC-HEFERFSTYLPDIKVAVFY---GGVNIKIHK 88 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~-~~~~~~~~~~~~~~v~~~~---~~~~~~~~~ 88 (356)
+.+.+..++-+|||.+.+..+...+...+. .++++.|+...+.++. .++.-+....|.+.-.+.. .........
T Consensus 34 ~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~ 111 (557)
T PF05876_consen 34 REVVVMKSAQVGKTELLLNWIGYSIDQDPG--PMLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILY 111 (557)
T ss_pred cEEEEEEcchhhHhHHHHhhceEEEEeCCC--CEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhh
Confidence 568899999999999766666666666664 5899999999999976 5566666655544322211 000111111
Q ss_pred HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccc----cchhHHHHHHhhCCCCCcEEEEEecCccc
Q 018420 89 DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESL----DMRRDVQEIFKMTPHDKQVMMFSATLSKE 164 (356)
Q Consensus 89 ~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~----~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 164 (356)
+... + ..+.++...+- ..+....++++++||.+.+.... +-.....+-...+... ..++...||...
T Consensus 112 k~f~-g-g~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~-~K~~~~STPt~~ 182 (557)
T PF05876_consen 112 KRFP-G-GFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSN-RKILRISTPTIE 182 (557)
T ss_pred eecC-C-CEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccC-cEEEEeCCCCCC
Confidence 1111 1 23444432221 12234567889999999995421 1223333333334223 355556666544
No 399
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.92 E-value=0.24 Score=46.90 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=29.6
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHh
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 67 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~ 67 (356)
..|+.+.+++|+|||||+. +..+........+ .+++ .-..+.+=..+.+++..
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl-~~LL~r~~~~~~G--~I~i--dg~dI~~i~~~~lr~~I 405 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTL-IKLLLRLYDPTSG--EILI--DGIDIRDISLDSLRKRI 405 (567)
T ss_pred cCCCEEEEECCCCCCHHHH-HHHHhccCCCCCC--eEEE--CCEehhhcCHHHHHHhc
Confidence 4577888999999999865 3334444333222 4555 43344333334444433
No 400
>PRK05973 replicative DNA helicase; Provisional
Probab=94.90 E-value=0.034 Score=45.61 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=34.8
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
.|.-++|.|+||+|||...+-.+......+. +++|++-- +-.+|..+++..+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge---~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGR---TGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC---eEEEEEEe-CCHHHHHHHHHHc
Confidence 3566899999999999776655555544322 67777643 3356677766655
No 401
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.89 E-value=0.31 Score=45.76 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=19.9
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
..|+.+.++||+|||||+. +-.++....
T Consensus 359 ~~G~~vaIvG~SGsGKSTL-l~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTL-LMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHH-HHHHhcCCC
Confidence 3478899999999999965 334444433
No 402
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.87 E-value=0.15 Score=51.41 Aligned_cols=42 Identities=10% Similarity=0.301 Sum_probs=30.9
Q ss_pred ccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 120 VRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 120 ~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
--++|+|++|.+.+ ......+..+....+++..+|+.|-+.+
T Consensus 122 ~~~lvlDD~h~~~~-~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITN-PEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCC-hHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 34599999998854 3444567777777788888888887744
No 403
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.87 E-value=0.031 Score=47.74 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=29.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 57 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~ 57 (356)
..++++++.||||||+. +-++...+.... +++.+=.+.+|--
T Consensus 173 r~NILisGGTGSGKTTl-LNal~~~i~~~e---RvItiEDtaELql 214 (355)
T COG4962 173 RCNILISGGTGSGKTTL-LNALSGFIDSDE---RVITIEDTAELQL 214 (355)
T ss_pred ceeEEEeCCCCCCHHHH-HHHHHhcCCCcc---cEEEEeehhhhcc
Confidence 45999999999999965 445555555444 6777777665533
No 404
>PRK08760 replicative DNA helicase; Provisional
Probab=94.86 E-value=0.12 Score=47.44 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=58.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHhH--
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHK-- 88 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~-- 88 (356)
|.-++|.|.||.|||...+-.+......... ++++++.- .-..|+..++....... ....+. |..+...+.
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~--~V~~fSlE-Ms~~ql~~Rl~a~~s~i---~~~~i~~g~l~~~e~~~~ 302 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKK--GVAVFSME-MSASQLAMRLISSNGRI---NAQRLRTGALEDEDWARV 302 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCC--ceEEEecc-CCHHHHHHHHHHhhCCC---cHHHHhcCCCCHHHHHHH
Confidence 4557899999999997765544443322111 56777643 44667777766544332 211122 222222221
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEecccccc
Q 018420 89 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 132 (356)
Q Consensus 89 ----~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 132 (356)
+.+.. ..++|. |++.+....++-.. -..+++||||-.+.+.
T Consensus 303 ~~a~~~l~~--~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 303 TGAIKMLKE--TKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHhc--CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 12222 244443 45555444432211 1357899999999885
No 405
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.85 E-value=0.13 Score=46.92 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=17.1
Q ss_pred CcEEEEccCCCccchHhHHHhhc
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQ 35 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~ 35 (356)
+.++++||+|+|||.++...+..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999775544433
No 406
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.84 E-value=0.18 Score=47.94 Aligned_cols=40 Identities=10% Similarity=0.223 Sum_probs=24.2
Q ss_pred cCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 117 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 117 ~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
....+++||||+|.+.. .-...+.+.+...+....+|+.|
T Consensus 119 ~~~~KVvIIdea~~Ls~--~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQ--AAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCH--HHHHHHHHHHhCCCCCeEEEEEe
Confidence 45678899999998854 22334555555544444444433
No 407
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.83 E-value=0.097 Score=45.68 Aligned_cols=40 Identities=13% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
...+++||||+|.+.. .-...+.+.+..-++...+|++|.
T Consensus 109 ~~~kvviI~~a~~~~~--~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 109 SNKKVYIIEHADKMTA--SAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred cCceEEEeehHhhhCH--HHHHHHHHHhcCCCCCceEEEEeC
Confidence 4668899999998854 233445555555455554555444
No 408
>PRK08006 replicative DNA helicase; Provisional
Probab=94.83 E-value=0.13 Score=47.22 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=59.4
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHhHH-
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHKD- 89 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~- 89 (356)
|.-++|-|.||.|||..++-.+....... +. +|++++.- .-..|+..++-..... +....+. |..+...+..
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~-g~-~V~~fSlE-M~~~ql~~Rlla~~~~---v~~~~i~~~~l~~~e~~~~ 297 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQ-DK-PVLIFSLE-MPGEQIMMRMLASLSR---VDQTRIRTGQLDDEDWARI 297 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhc-CC-eEEEEecc-CCHHHHHHHHHHHhcC---CCHHHhhcCCCCHHHHHHH
Confidence 44568899999999976554444433211 11 56776643 4466676666544332 2222222 2222233222
Q ss_pred -----HHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 90 -----LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 90 -----~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
.+... ..+.|. |+..+....++-......+++||||-.|.+..
T Consensus 298 ~~a~~~~~~~-~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 350 (471)
T PRK08006 298 SGTMGILLEK-RNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRV 350 (471)
T ss_pred HHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccC
Confidence 12111 245543 45555444432211123578999999998853
No 409
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.79 E-value=0.1 Score=45.55 Aligned_cols=42 Identities=12% Similarity=-0.050 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCccchHhHHHhh-cCcCC--CCCCeeEEEEcCch
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTL-QQTEP--NPGQVTALVLCHTR 53 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~-~~~~~--~~~~~~vlii~P~~ 53 (356)
|.-+.|.+++|+|||...+..+. ..+.. +....+++|+..-.
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 34568999999999976554433 33322 22123789988743
No 410
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.76 E-value=0.033 Score=49.10 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=23.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEE
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVL 49 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii 49 (356)
+..+++++|||||||+. +.+++..+.......+++.+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEE
Confidence 45688999999999976 45555555433222245554
No 411
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.74 E-value=0.05 Score=48.72 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=33.6
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHH
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 64 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~ 64 (356)
++++.||||||||..++++-+.... . .++++=|.-++...+....+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~---~--s~vv~D~Kge~~~~t~~~r~ 46 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP---G--SVVVLDPKGENFELTSEHRR 46 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC---C--CEEEEccchhHHHHHHHHHH
Confidence 5789999999999887665554432 1 57888898888876655433
No 412
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.73 E-value=0.076 Score=45.20 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=18.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcC
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQ 36 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~ 36 (356)
++.+++.+|||+|||++....+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999997765444433
No 413
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.72 E-value=0.31 Score=37.74 Aligned_cols=139 Identities=16% Similarity=0.238 Sum_probs=64.6
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcC
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNE 94 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 94 (356)
+.|....|-|||.+++..++..+..+. +|+++-=.+.-. ..-+... ...++++.....-.+......... .
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~---rV~ivQFlKg~~--~~GE~~~-l~~l~~~~~~~~g~~f~~~~~~~~-~-- 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGM---RVLIVQFLKGGR--YSGELKA-LKKLPNVEIERFGKGFVWRMNEEE-E-- 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT-----EEEEESS--SS----HHHHH-HGGGT--EEEE--TT----GGGHH-H--
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCC---EEEEEEEecCCC--CcCHHHH-HHhCCeEEEEEcCCcccccCCCcH-H--
Confidence 567888999999999999998887766 677776444311 1122222 222234333221111100000000 0
Q ss_pred CCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch--hHHHHHHhhCCCCCcEEEEEecCccchHHH
Q 018420 95 CPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR--RDVQEIFKMTPHDKQVMMFSATLSKEIRPV 168 (356)
Q Consensus 95 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 168 (356)
+ ....+..+.... ..+.-..+++||+||+-.... .++. ..+..++...+...-+|+.-..+++.+.+.
T Consensus 77 --~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~-~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 77 --D--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVD-YGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp --H--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHH-TTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred --H--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhH-CCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 1 001111122111 222346789999999988876 4443 456677776666776777666666554444
No 414
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.69 E-value=0.03 Score=50.35 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=19.4
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCC
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNP 41 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~ 41 (356)
+++.||||||||++ +..++..+....
T Consensus 261 iLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 261 ILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred EEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 57899999999987 566666555443
No 415
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.69 E-value=0.14 Score=52.05 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=64.0
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-ccccCCCCCCCCEEE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 290 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-~~~~G~d~~~~~~vi 290 (356)
.+.+++|.+|+.+.|.+.++.+.+. +.++..+++..+..++.+++....+|.++|+|+|. .+...+++.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4578999999999999999888753 45677889999999999999999999999999995 455566777888877
Q ss_pred Eec
Q 018420 291 NYD 293 (356)
Q Consensus 291 ~~~ 293 (356)
+-.
T Consensus 728 IDE 730 (1147)
T PRK10689 728 VDE 730 (1147)
T ss_pred Eec
Confidence 543
No 416
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.66 E-value=0.11 Score=44.72 Aligned_cols=43 Identities=12% Similarity=-0.084 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCccchHhHHHhhc-CcCC--CCCCeeEEEEcCchH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQ-QTEP--NPGQVTALVLCHTRE 54 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~-~~~~--~~~~~~vlii~P~~~ 54 (356)
|.-+.+.+|+|+|||..++..+.. .+.. +....+++|+..-..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 355789999999999766544432 2221 122237899886543
No 417
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.66 E-value=0.13 Score=50.09 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=59.0
Q ss_pred HHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCC-----CCeEE-EecCCCHHHHHHHHHHhhcCCCcEEEEcCc
Q 018420 205 NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN-----FPSIC-IHSGMSQEERLTRYKGFKEGNKRILVATDL 276 (356)
Q Consensus 205 ~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~-----~~~~~-~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~ 276 (356)
.-.+..+.-...++++.+.+|+...+.+.++.|+... ..+.. +|+.++..++++.++.|.+|+.+|||+|+.
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3455555566677899999999999999998888753 33333 999999999999999999999999999964
No 418
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.65 E-value=0.076 Score=41.12 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=68.4
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHH-HHHHHHHHhccCCCceEEEEEcCc-----chHHh
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ-ICHEFERFSTYLPDIKVAVFYGGV-----NIKIH 87 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q-~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~ 87 (356)
-+.+..++|.|||.+++..++.....+. +|+++-=.+.-..+ -...++.+ ++.+.....+. +....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~---~v~ivQFlKg~~~~GE~~~l~~~-----~~~~~~~g~g~~~~~~~~~~~ 78 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGK---KVGVIQFIKGAWPNGERAAFEPH-----GVEFQVMGTGFTWETQNREAD 78 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCcccChHHHHHhc-----CcEEEECCCCCeecCCCcHHH
Confidence 4678899999999998888888776665 56555211110000 01111111 22222211110 11111
Q ss_pred HHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch--hHHHHHHhhCCCCCcEEEEEecCccch
Q 018420 88 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR--RDVQEIFKMTPHDKQVMMFSATLSKEI 165 (356)
Q Consensus 88 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~ 165 (356)
... ....+.... ..+.-..+++||+||+-.... .++. ..+..++...++...+|+....+|+.+
T Consensus 79 ~~~------------~~~~~~~a~-~~l~~~~~DlvVLDEi~~A~~-~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l 144 (173)
T TIGR00708 79 TAI------------AKAAWQHAK-EMLADPELDLVLLDELTYALK-YGYLDVEEVVEALQERPGHQHVIITGRGCPQDL 144 (173)
T ss_pred HHH------------HHHHHHHHH-HHHhcCCCCEEEehhhHHHHH-CCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHH
Confidence 110 111111111 122235789999999997765 3433 346667777777776777666666654
Q ss_pred HHH
Q 018420 166 RPV 168 (356)
Q Consensus 166 ~~~ 168 (356)
.+.
T Consensus 145 ~e~ 147 (173)
T TIGR00708 145 LEL 147 (173)
T ss_pred HHh
Confidence 444
No 419
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.64 E-value=0.035 Score=44.53 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=23.1
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 52 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~ 52 (356)
-+++++|||||||+.. ..++..+...... +++.+-..
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~~~-~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNKTH-HILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcCCc-EEEEEcCC
Confidence 3689999999999774 4445554433222 45555443
No 420
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=0.037 Score=51.86 Aligned_cols=35 Identities=31% Similarity=0.392 Sum_probs=25.7
Q ss_pred cCCccEEEEeccccccccccchhHHHHHHhhCCCCC
Q 018420 117 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDK 152 (356)
Q Consensus 117 ~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~ 152 (356)
+++..++|+|||-...+ ......+++.+..+..+.
T Consensus 620 lr~P~VLILDEATSALD-aeSE~lVq~aL~~~~~~r 654 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALD-AESEYLVQEALDRLMQGR 654 (716)
T ss_pred hcCCCEEEEechhhhcc-hhhHHHHHHHHHHhhcCC
Confidence 56677899999998887 555666777776666554
No 421
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.62 E-value=0.0044 Score=48.11 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=16.4
Q ss_pred cEEEEccCCCccchHhHHHhhcCc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQT 37 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~ 37 (356)
++++.+++|+|||+.. ..+++.+
T Consensus 1 ~i~iTG~pG~GKTTll-~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLL-KKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHH-HHHHHHH
T ss_pred CEEEECcCCCCHHHHH-HHHHHHh
Confidence 4789999999999774 4444544
No 422
>PRK05636 replicative DNA helicase; Provisional
Probab=94.53 E-value=0.14 Score=47.29 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=55.8
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC-cchHHhHH-
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG-VNIKIHKD- 89 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~- 89 (356)
|.-++|.|.||.|||...+-.+........ . ++++++. ..-..|+..++-..... +....+..+ .+...+..
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g-~-~v~~fSl-EMs~~ql~~R~ls~~s~---v~~~~i~~g~l~~~e~~~~ 338 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHN-K-ASVIFSL-EMSKSEIVMRLLSAEAE---VRLSDMRGGKMDEDAWEKL 338 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCC-C-eEEEEEe-eCCHHHHHHHHHHHhcC---CCHHHHhcCCCCHHHHHHH
Confidence 444688999999999765533333222211 1 5666643 34456666555443322 222222222 22222211
Q ss_pred -----HHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 90 -----LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 90 -----~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
.+.+ ..+.|. |.+.+....++-... ..+++||||-.|.+..
T Consensus 339 ~~a~~~l~~--~~l~I~d~~~~ti~~I~~~~r~~~~~-~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 339 VQRLGKIAQ--APIFIDDSANLTMMEIRSKARRLKQK-HDLKLIVVDYLQLMSS 389 (505)
T ss_pred HHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCC
Confidence 1222 245543 344454433322111 3578999999998863
No 423
>PHA00350 putative assembly protein
Probab=94.52 E-value=0.2 Score=44.47 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=19.1
Q ss_pred EEEEccCCCccchHhHH-HhhcCcCCC
Q 018420 15 VICQAKSGMGKTAVFVL-STLQQTEPN 40 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~-~~~~~~~~~ 40 (356)
.++.|.+|||||+.++. .++..+.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 57899999999977664 455555544
No 424
>PHA02542 41 41 helicase; Provisional
Probab=94.50 E-value=0.094 Score=47.97 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=31.0
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 65 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~ 65 (356)
|.-+++.|.||.|||..++-.+......+ .+|+++.- -.-..|+..++..
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g---~~Vl~fSL-EM~~~ql~~Rl~a 239 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQG---YNVLYISM-EMAEEVIAKRIDA 239 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcC---CcEEEEec-cCCHHHHHHHHHH
Confidence 34468899999999977665555544322 25666652 3335666666544
No 425
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.22 Score=44.35 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
+.++++||+|+|||..+.
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999996643
No 426
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.47 E-value=0.052 Score=47.67 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=26.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
+..+++++|||||||+.. ..++..+...... +++.+-...+
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~-~i~tiEdp~E 162 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKNAAG-HIITIEDPIE 162 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcCCCC-EEEEEcCChh
Confidence 567899999999999764 4555555433222 5666554444
No 427
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.45 E-value=0.16 Score=43.93 Aligned_cols=60 Identities=8% Similarity=0.146 Sum_probs=32.2
Q ss_pred cEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 97 QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 97 ~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
.|-|-....+...+.... .....+++|||++|.+.. .-...+.+.+..-+ ...+|++|..
T Consensus 103 ~I~id~ir~i~~~l~~~p-~~~~~kVvII~~ae~m~~--~aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPP-LEAPRKVVVIEDAETMNE--AAANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred cCcHHHHHHHHHHHccCc-ccCCceEEEEEchhhcCH--HHHHHHHHHHhCCC-CCeEEEEECC
Confidence 343434444444333222 235678999999998843 33344555555544 5545555543
No 428
>PRK04328 hypothetical protein; Provisional
Probab=94.41 E-value=0.047 Score=45.52 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=33.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|..++|.+++|+|||...+..+...+..+. +++|+.- .+-.++..++++.+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge---~~lyis~-ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGE---PGVYVAL-EEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCC---cEEEEEe-eCCHHHHHHHHHHc
Confidence 567899999999999766555555444433 5777763 34455555555554
No 429
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.41 E-value=0.29 Score=48.80 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=68.5
Q ss_pred HHHHHhc-cCCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEc-CccccCC
Q 018420 208 LNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGI 281 (356)
Q Consensus 208 ~~~~~~~-~~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t-~~~~~G~ 281 (356)
+...++. ..++.+.|.+||-=-|++=++.++++ .+++..++.-.+..+.+.+++..++|+++|+|+| ..++.++
T Consensus 633 mRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv 712 (1139)
T COG1197 633 MRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDV 712 (1139)
T ss_pred HHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCc
Confidence 3334443 36678999999977777766666664 5667777777889999999999999999999999 7899999
Q ss_pred CCCCCCEEEEe
Q 018420 282 DIERVNIVINY 292 (356)
Q Consensus 282 d~~~~~~vi~~ 292 (356)
-+.++..+|+-
T Consensus 713 ~FkdLGLlIID 723 (1139)
T COG1197 713 KFKDLGLLIID 723 (1139)
T ss_pred EEecCCeEEEe
Confidence 99999988854
No 430
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.37 E-value=0.2 Score=48.95 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
..+++++||+|+|||...
T Consensus 203 ~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCceEEECCCCCCHHHHH
Confidence 458999999999999764
No 431
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.35 E-value=0.23 Score=38.63 Aligned_cols=135 Identities=10% Similarity=0.060 Sum_probs=72.5
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC-----cchH-Hh
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG-----VNIK-IH 87 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~-----~~~~-~~ 87 (356)
-+.|.-..|-|||.+++..+++....+. +|+++-=.+.-..+-...+-+ ..+++.......+ .+.. ..
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~---rV~iiQFlKg~~~~GE~~~l~---~~~~v~~~~~g~~~~~~~~~~~~~~ 96 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGT---PVLIVQFLKGGIQQGPDRPIQ---LGQNLDWVRCDLPRCLDTPHLDESE 96 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCC---EEEEEEEecCCCcchHHHHHH---hCCCcEEEECCCCCeeeCCCcCHHH
Confidence 3567889999999999999998887766 666665333211111111111 1223333221110 0100 11
Q ss_pred HHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch--hHHHHHHhhCCCCCcEEEEEecCccch
Q 018420 88 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR--RDVQEIFKMTPHDKQVMMFSATLSKEI 165 (356)
Q Consensus 88 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~ 165 (356)
.. .....+.... ..+.-..+++||+||+-...+ .++. ..+..++...++...+|+.--.+|+.+
T Consensus 97 ~~------------~~~~~~~~a~-~~l~~~~~dlvVLDEi~~Al~-~gli~~eeVl~~L~~rp~~~evILTGR~~p~~L 162 (178)
T PRK07414 97 KK------------ALQELWQYTQ-AVVDEGRYSLVVLDELSLAIQ-FGLIPETEVLEFLEKRPSHVDVILTGPEMPESL 162 (178)
T ss_pred HH------------HHHHHHHHHH-HHHhCCCCCEEEEehhHHHHH-CCCccHHHHHHHHHhCCCCCEEEEECCCCCHHH
Confidence 11 0111111111 122235689999999998876 4443 456677777777777777666666654
Q ss_pred HHH
Q 018420 166 RPV 168 (356)
Q Consensus 166 ~~~ 168 (356)
.+.
T Consensus 163 ie~ 165 (178)
T PRK07414 163 LAI 165 (178)
T ss_pred HHh
Confidence 433
No 432
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.34 E-value=0.029 Score=47.56 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=28.6
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 55 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l 55 (356)
.+.++++.|+||||||.. +.+++..+... ..+++.+=...++
T Consensus 126 ~~~~ili~G~tGSGKTT~-l~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTL-LNALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHCHTT--TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchH-HHHHhhhcccc--ccceEEeccccce
Confidence 367899999999999976 45556655554 1267776665553
No 433
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.31 E-value=0.16 Score=44.08 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC---CCCeeEEEEcCch
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTR 53 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~vlii~P~~ 53 (356)
+.-+.|.+|+|+|||..++..+....... ....+++|+.--.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 45578999999999977665555433221 1123788887543
No 434
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.29 E-value=0.055 Score=46.66 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=32.0
Q ss_pred hhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 7 PQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 7 ~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
-++..+++++++++||||||.. +.+++..+.... +++.+=-+.+
T Consensus 138 ~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~---rivtIEdt~E 181 (312)
T COG0630 138 LAIEARKSIIICGGTASGKTTL-LNALLDFIPPEE---RIVTIEDTPE 181 (312)
T ss_pred HHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchh---cEEEEecccc
Confidence 3445689999999999999966 677777776544 5666555544
No 435
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.28 E-value=0.25 Score=42.83 Aligned_cols=41 Identities=2% Similarity=0.106 Sum_probs=25.0
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
...+++|||++|.+.. .-...+.+.+..-++...++++|..
T Consensus 106 g~~KV~iI~~a~~m~~--~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAERLTE--AAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCceEEEEechhhhCH--HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 4678899999998854 3334455555554444544444443
No 436
>PHA00012 I assembly protein
Probab=94.24 E-value=0.46 Score=40.64 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=21.4
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCC
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPN 40 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~ 40 (356)
.++.|-+|+|||+.+...+...+.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 57899999999988877777777655
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.23 E-value=0.066 Score=44.06 Aligned_cols=51 Identities=6% Similarity=0.038 Sum_probs=31.5
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 65 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~ 65 (356)
.+..+++.+++|+|||..++..+...+..+ .++++++... -..+..+++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~-~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQL-TTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCC-CHHHHHHHHHH
Confidence 356789999999999977544444433333 2678887543 33444444443
No 438
>PRK06321 replicative DNA helicase; Provisional
Probab=94.23 E-value=0.32 Score=44.63 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=58.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHhH--
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHK-- 88 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~-- 88 (356)
|.=++|.|.||.|||...+-.+....... +. ++++++. ..-..|+..++...... +....+. +......+.
T Consensus 226 G~LiiiaarPgmGKTafal~ia~~~a~~~-g~-~v~~fSL-EMs~~ql~~Rlla~~s~---v~~~~i~~~~l~~~e~~~~ 299 (472)
T PRK06321 226 SNLMILAARPAMGKTALALNIAENFCFQN-RL-PVGIFSL-EMTVDQLIHRIICSRSE---VESKKISVGDLSGRDFQRI 299 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHhc-CC-eEEEEec-cCCHHHHHHHHHHhhcC---CCHHHhhcCCCCHHHHHHH
Confidence 34468899999999976554333322111 11 5666654 34466676665543332 2222222 222222222
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEecccccc
Q 018420 89 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 132 (356)
Q Consensus 89 ----~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 132 (356)
..+.. ..++|- |.+.+....+.-.. -.++++||||-.|.+.
T Consensus 300 ~~a~~~l~~--~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 300 VSVVNEMQE--HTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHc--CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 12222 245554 45555554443221 2357899999999885
No 439
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.23 E-value=0.15 Score=42.14 Aligned_cols=42 Identities=17% Similarity=0.028 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC---CCCeeEEEEcCch
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTR 53 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~vlii~P~~ 53 (356)
|.-+.+.+|+|+|||..++..+....... ....+++|+....
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 55678999999999977665554433222 1112688887543
No 440
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.20 E-value=0.84 Score=40.50 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=25.8
Q ss_pred EEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHH
Q 018420 16 ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 58 (356)
Q Consensus 16 li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q 58 (356)
++.++.|+|||......++..+...+....++++.....+...
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~ 43 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDI 43 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHH
Confidence 5789999999988777666665555543356666555555554
No 441
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.23 Score=45.08 Aligned_cols=22 Identities=9% Similarity=0.388 Sum_probs=16.7
Q ss_pred CCccEEEEeccccccccccchh
Q 018420 118 KNVRHFILDECDKMLESLDMRR 139 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~ 139 (356)
+.++++|+|+..++.++....+
T Consensus 597 S~lsiivvDdiErLiD~vpIGP 618 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGP 618 (744)
T ss_pred CcceEEEEcchhhhhcccccCc
Confidence 5677899999999988754443
No 442
>PF12846 AAA_10: AAA-like domain
Probab=94.19 E-value=0.036 Score=47.65 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=27.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
+.++++.|+||+|||......+...+..+. .++++=|..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~---~~~i~D~~g~ 40 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGP---RVVIFDPKGD 40 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCC---CEEEEcCCch
Confidence 468999999999999876644444444442 5677655544
No 443
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.033 Score=46.91 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
-|+++.+|||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 468999999999997643
No 444
>PRK08840 replicative DNA helicase; Provisional
Probab=94.15 E-value=0.2 Score=45.79 Aligned_cols=114 Identities=15% Similarity=0.132 Sum_probs=57.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHhHH-
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHKD- 89 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~- 89 (356)
|.-++|-|.||.|||..++-.+....... +. ++++++.- .-.+|+..++-..... +....+ .|..+...+..
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~~-~~-~v~~fSlE-Ms~~ql~~Rlla~~s~---v~~~~i~~~~l~~~e~~~~ 290 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMDQ-DK-PVLIFSLE-MPAEQLMMRMLASLSR---VDQTKIRTGQLDDEDWARI 290 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhC-CC-eEEEEecc-CCHHHHHHHHHHhhCC---CCHHHHhcCCCCHHHHHHH
Confidence 45568899999999976543333332211 11 56777643 4466676665544332 222111 22222222222
Q ss_pred -----HHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEecccccc
Q 018420 90 -----LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 132 (356)
Q Consensus 90 -----~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 132 (356)
.+... ..+.|. |...+....++-......+++||||-.|.+.
T Consensus 291 ~~a~~~l~~~-~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 291 SSTMGILMEK-KNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 12111 244443 3444544333221111247899999999885
No 445
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.08 E-value=0.074 Score=42.17 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=20.5
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
..+..+++.+|||||||... -+++..+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll-~aL~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLL-NALLAFIP 50 (186)
T ss_pred hCCCEEEEECCCCCCHHHHH-HHHHhhcC
Confidence 34788999999999999763 44444444
No 446
>PRK05748 replicative DNA helicase; Provisional
Probab=94.05 E-value=0.12 Score=47.20 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=57.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE-EcCcchHHhH--
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF-YGGVNIKIHK-- 88 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~-- 88 (356)
|.-++|.|+||.|||...+-.+........ . ++++++. ..-.+|+..++....... ....+ .|......+.
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~~g-~-~v~~fSl-Ems~~~l~~R~l~~~~~v---~~~~i~~~~l~~~e~~~~ 276 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATKTD-K-NVAIFSL-EMGAESLVMRMLCAEGNI---DAQRLRTGQLTDDDWPKL 276 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHhCC-C-eEEEEeC-CCCHHHHHHHHHHHhcCC---CHHHhhcCCCCHHHHHHH
Confidence 456789999999999765544444332211 1 5667654 344667766664333222 22211 1222222221
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEecccccc
Q 018420 89 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKML 132 (356)
Q Consensus 89 ----~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 132 (356)
..+... .+.|. |++.+....++-.....++++||||-.|.+.
T Consensus 277 ~~a~~~l~~~--~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 277 TIAMGSLSDA--PIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHhcC--CEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 112222 34443 4455544333211111257889999999885
No 447
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.05 E-value=0.081 Score=48.39 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=24.5
Q ss_pred cCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 117 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 117 ~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
..++++.||||+|.++. ..|...++.+=. ++..++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~-~afNALLKTLEE---PP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSK-QAFNALLKTLEE---PPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhH-HHHHHHhccccc---CccCeEEEEec
Confidence 46788899999998865 344433333311 33446666666
No 448
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.25 Score=43.61 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=19.1
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCC
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPN 40 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~ 40 (356)
.++++.|+||+|||.+. -.+++.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHHhh
Confidence 56999999999999774 4444444433
No 449
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.01 E-value=0.071 Score=46.06 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=20.9
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCC
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEP 39 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~ 39 (356)
.+.++++.+|||||||+. +-+++..+..
T Consensus 143 ~~~~ili~G~tGsGKTTl-l~al~~~~~~ 170 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTF-LKSLVDEIPK 170 (308)
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHccCCc
Confidence 578999999999999976 3445555543
No 450
>PRK09087 hypothetical protein; Validated
Probab=94.00 E-value=0.14 Score=42.05 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=13.9
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
..++++||+|+|||-..
T Consensus 45 ~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999553
No 451
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.99 E-value=0.11 Score=43.51 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=25.5
Q ss_pred EEEEccCCCccchHhHHHhhc-CcCC--CCCCeeEEEEcCchHH
Q 018420 15 VICQAKSGMGKTAVFVLSTLQ-QTEP--NPGQVTALVLCHTREL 55 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~-~~~~--~~~~~~vlii~P~~~l 55 (356)
+=+++++|+|||..++..++. .+.. +....+++||......
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 448999999999665544333 3322 2223379999865443
No 452
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.92 E-value=0.3 Score=42.15 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=26.5
Q ss_pred cCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 117 LKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 117 ~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
....+++|||++|.+.. .-...+.+.+..-+++..+|++|..+
T Consensus 106 ~~~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 106 LNGYRLFVIEPADAMNE--SASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred cCCceEEEecchhhhCH--HHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 35678899999998843 33344555555544455455555543
No 453
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.90 E-value=0.099 Score=41.67 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=35.0
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCC-------CCCCeeEEEEcCchHHHHHHHHHHHHHhc
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEP-------NPGQVTALVLCHTRELAYQICHEFERFST 68 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~-------~~~~~~vlii~P~~~l~~q~~~~~~~~~~ 68 (356)
.|.-+++.||+|+|||...+-.+...... .....+++|+..-.. ..++.+++.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 46668999999999997765444443321 113347899887655 5567777776653
No 454
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.87 E-value=0.046 Score=46.00 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=22.2
Q ss_pred ccHhhHhcCCcEEEEccCCCccchHhHHH
Q 018420 4 ECIPQAILGMDVICQAKSGMGKTAVFVLS 32 (356)
Q Consensus 4 ~~~~~~~~~~~~li~~~tGsGKT~~~~~~ 32 (356)
+++..+..+.++++.||+|+|||..+...
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 34555666889999999999999775433
No 455
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.85 E-value=0.05 Score=44.09 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 52 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~ 52 (356)
|.-+.+.+|+|+|||...+..+......+ .+++|+.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQG---KKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECC
Confidence 56678999999999977665555444332 267887764
No 456
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.81 E-value=1.4 Score=40.56 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=73.6
Q ss_pred CCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchH---HhHHHHhcCCCc
Q 018420 21 SGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK---IHKDLLKNECPQ 97 (356)
Q Consensus 21 tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~ 97 (356)
.++||+..-++++.+.+..+-.+ .++|.+-+.+-+.|+..++. .++++++..+||+.... +..+..+.+.-.
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~P-P~lIfVQs~eRak~L~~~L~----~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKP-PVLIFVQSKERAKQLFEELE----IYDNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCC-CeEEEEecHHHHHHHHHHhh----hccCcceeeEecccchhHHHHHHHHHhccCee
Confidence 47788877777777777766555 68888888888888888775 33589999999986543 334555667778
Q ss_pred EEEechHHHHHHHhcCCcccCCccEEEEeccccc
Q 018420 98 IVVGTPGRILALARDKDLSLKNVRHFILDECDKM 131 (356)
Q Consensus 98 i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~ 131 (356)
++||| .++.++ +++.++++||-++.-..
T Consensus 441 vLicT-----dll~RG-iDf~gvn~VInyD~p~s 468 (593)
T KOG0344|consen 441 VLICT-----DLLARG-IDFKGVNLVINYDFPQS 468 (593)
T ss_pred EEEeh-----hhhhcc-ccccCcceEEecCCCch
Confidence 99999 333344 78899999999777644
No 457
>PRK10436 hypothetical protein; Provisional
Probab=93.81 E-value=0.067 Score=48.69 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=19.1
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
+.-+++++|||||||++. .+++..+.
T Consensus 218 ~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 218 QGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 345789999999999874 45555554
No 458
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.78 E-value=0.089 Score=43.31 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=30.1
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 64 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~ 64 (356)
.|..+++.+++|+|||..+...+...+..+. +++++..- +..+++.+..+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~---~~~~is~e-~~~~~i~~~~~ 68 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGD---PVIYVTTE-ESRESIIRQAA 68 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEEcc-CCHHHHHHHHH
Confidence 3667899999999999765544433333222 57777642 33445444433
No 459
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.76 E-value=0.079 Score=44.57 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=18.4
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcC
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
..+++.+|||||||.. +.+++..+.
T Consensus 81 GlilisG~tGSGKTT~-l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTT-LYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHH-HHHHHhhhC
Confidence 4578999999999976 344555554
No 460
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.76 E-value=0.034 Score=43.60 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=25.7
Q ss_pred CcEEEechHHHHHHHhcCCcc--cCCccEEEEeccccccc
Q 018420 96 PQIVVGTPGRILALARDKDLS--LKNVRHFILDECDKMLE 133 (356)
Q Consensus 96 ~~i~v~T~~~l~~~~~~~~~~--~~~~~~viiDE~H~~~~ 133 (356)
++|+|+++..++.-....... ...-.+|||||||.+.+
T Consensus 120 adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 120 ADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp -SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred CCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 699999999987643322221 12446799999999865
No 461
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.76 E-value=0.094 Score=43.00 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=34.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
+..+++.+++|+|||...+..+...+..+. +++|+... +-.++..+++..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~---~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGE---KAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECC-CCHHHHHHHHHHc
Confidence 566789999999999765555544443322 67887754 4466777766554
No 462
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.75 E-value=0.12 Score=45.25 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=20.6
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
-+|++.+|.||+|+|||... ..++..+.
T Consensus 131 GkGQR~LIvG~pGtGKTTLl-~~la~~i~ 158 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLL-QQIAAAVA 158 (380)
T ss_pred CCCceEEEECCCCCCHHHHH-HHHHHHHH
Confidence 35899999999999999764 33444443
No 463
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=93.75 E-value=0.4 Score=37.36 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=68.0
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHH-HHHHHHHhccCCCceEEEEEcCcchHHhHHHHhc
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI-CHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 93 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 93 (356)
++|.-..|-|||++++..++..+..+. ++.|+-=.+.-...- ...+..+ +..+....-+.-.........
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~---rv~vvQFiKg~~~~GE~~~~~~~-----~~~v~~~~~~~g~tw~~~~~~- 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGL---RVGVVQFIKGGWKYGEEAALEKF-----GLGVEFHGMGEGFTWETQDRE- 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCC---EEEEEEEeecCcchhHHHHHHhh-----ccceeEEecCCceeCCCcCcH-
Confidence 578889999999999999999888766 555554211111111 1112222 112221111111000000000
Q ss_pred CCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch--hHHHHHHhhCCCCCcEEEEEecCccchHHH
Q 018420 94 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR--RDVQEIFKMTPHDKQVMMFSATLSKEIRPV 168 (356)
Q Consensus 94 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~--~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 168 (356)
.++ ......+.... ..+.-..+++||+||.-.... .++. ..+..++...|....+|+..-..++.+-+.
T Consensus 102 --~d~--~aa~~~w~~a~-~~l~~~~ydlviLDEl~~al~-~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ 172 (198)
T COG2109 102 --ADI--AAAKAGWEHAK-EALADGKYDLVILDELNYALR-YGLLPLEEVVALLKARPEHTHVIITGRGAPPELIEL 172 (198)
T ss_pred --HHH--HHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHH-cCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHH
Confidence 011 11111111111 112234688999999987765 4433 456666666666666666555555554433
No 464
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.73 E-value=0.26 Score=47.10 Aligned_cols=134 Identities=14% Similarity=0.160 Sum_probs=69.6
Q ss_pred cHhhHhcC--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCc
Q 018420 5 CIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGV 82 (356)
Q Consensus 5 ~~~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~ 82 (356)
.+..+.+. +.+++.|+=|-|||.+.=+++........ ..++++..|+.+-++...+-+.+-.... |.+-.......
T Consensus 222 ~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~~l-g~~~~v~~d~~ 299 (758)
T COG1444 222 ILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAGKGLEFL-GYKRKVAPDAL 299 (758)
T ss_pred HHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHHhHHHh-CCccccccccc
Confidence 34444443 35788999999999654333321111111 3379999999998888777655433222 22111100000
Q ss_pred chHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 83 NIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 83 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
. ...........|=+.+|+... ..-+++|||||=.+.- ..+.++....+ .+++|.|..
T Consensus 300 g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIpl-----plL~~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 300 G---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIPL-----PLLHKLLRRFP----RVLFSTTIH 357 (758)
T ss_pred c---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCCh-----HHHHHHHhhcC----ceEEEeeec
Confidence 0 000000111234444544442 1257799999986632 45555555433 678888864
No 465
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.72 E-value=0.11 Score=47.84 Aligned_cols=48 Identities=25% Similarity=0.315 Sum_probs=35.1
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHH
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 65 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~ 65 (356)
.++++.||||||||..++++.+.... + .+++.=|.-+|...+....++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~---~--s~iV~D~KgEl~~~t~~~r~~ 92 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYP---G--SMIVTDPKGELYEKTAGYRKK 92 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhcc---C--CEEEEECCCcHHHHHHHHHHH
Confidence 36999999999999888777664322 2 478888988887766554443
No 466
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.68 E-value=0.77 Score=38.72 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=18.6
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCC
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEP 39 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~ 39 (356)
+++++.+|+|+|||+. +-.+...+..
T Consensus 112 ~~~~i~g~~g~GKttl-~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL-LRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHH-HHHHhCccCC
Confidence 5789999999999965 3444444443
No 467
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.57 E-value=0.26 Score=43.40 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=57.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 91 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 91 (356)
.+.+-++||.|.|||... -.....+....+. + ++.-+...++.+++..+. ++.
T Consensus 62 ~~GlYl~G~vG~GKT~Lm-d~f~~~lp~~~k~-R----~HFh~Fm~~vh~~l~~~~------------~~~--------- 114 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLM-DLFYDSLPIKRKR-R----VHFHEFMLDVHSRLHQLR------------GQD--------- 114 (362)
T ss_pred CceEEEECCCCCchhHHH-HHHHHhCCccccc-c----ccccHHHHHHHHHHHHHh------------CCC---------
Confidence 456789999999999642 2223333332222 2 244566666666665543 100
Q ss_pred hcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhh-CCCCCcEEEEEecCccc
Q 018420 92 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSATLSKE 164 (356)
Q Consensus 92 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~-~~~~~~~i~~SaT~~~~ 164 (356)
+-+ ..+...+ .....++.+||+|.. +..-.-.+.+++.. +..+.-+|++|-++|++
T Consensus 115 -----~~l----~~va~~l------~~~~~lLcfDEF~V~--DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 115 -----DPL----PQVADEL------AKESRLLCFDEFQVT--DIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred -----ccH----HHHHHHH------HhcCCEEEEeeeecc--chhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 000 0111111 134556999999954 23334444444433 34556677777777655
No 468
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.56 E-value=0.27 Score=47.86 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
..+.++.||+|+|||..+-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 469
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=93.46 E-value=0.096 Score=53.56 Aligned_cols=58 Identities=22% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC--CCCeeEEEEcCchHHHHHHHHHHHHHhcc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN--PGQVTALVLCHTRELAYQICHEFERFSTY 69 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~--~~~~~vlii~P~~~l~~q~~~~~~~~~~~ 69 (356)
+++++|.|..|||||.+....++..+... -....+++++-|++-+..+..+++.-...
T Consensus 16 ~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 16 GQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred CCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 67899999999999988877777766663 34458999999999999999988865543
No 470
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.43 E-value=0.23 Score=43.30 Aligned_cols=41 Identities=5% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
...+++|||++|.+.. .-...+.+.+..-++..-+|++|.-
T Consensus 107 g~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 107 GGAKVVWLPDAALLTD--AAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred CCceEEEEcchHhhCH--HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 5678899999998854 3334455555554444444444444
No 471
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.42 E-value=0.35 Score=47.96 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=0.0
Q ss_pred ccccHhhHhc------CCcEEEEccCCCccchHhHHHhhcCcCCCCCC-----eeEE-----EEcCchHHHHHHHHHHHH
Q 018420 2 QHECIPQAIL------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQ-----VTAL-----VLCHTRELAYQICHEFER 65 (356)
Q Consensus 2 Q~~~~~~~~~------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~vl-----ii~P~~~l~~q~~~~~~~ 65 (356)
|.+-+..+.. ..+.+++||+|+|||.+ .-.+...+..+... .+++ -+.-...-..++.++++.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal-~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ 270 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAV-VEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKS 270 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHH-HHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHH
Q ss_pred HhccCCCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccccc---chhHHH
Q 018420 66 FSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLD---MRRDVQ 142 (356)
Q Consensus 66 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~---~~~~~~ 142 (356)
.. ......+...| ++|||+|.+.. .+ -.....
T Consensus 271 ii--------------------~e~~~~~~~~I------------------------LfIDEih~l~~-~g~~~~~~d~~ 305 (852)
T TIGR03345 271 VI--------------------DEVKASPQPII------------------------LFIDEAHTLIG-AGGQAGQGDAA 305 (852)
T ss_pred HH--------------------HHHHhcCCCeE------------------------EEEeChHHhcc-CCCccccccHH
Q ss_pred HHHhhCCCCCcEEEEEecCccchHHHHH
Q 018420 143 EIFKMTPHDKQVMMFSATLSKEIRPVCK 170 (356)
Q Consensus 143 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 170 (356)
.+++..-..-.+.++.||-.+...+++.
T Consensus 306 n~Lkp~l~~G~l~~IgaTT~~e~~~~~~ 333 (852)
T TIGR03345 306 NLLKPALARGELRTIAATTWAEYKKYFE 333 (852)
T ss_pred HHhhHHhhCCCeEEEEecCHHHHhhhhh
No 472
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.42 E-value=0.56 Score=36.51 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=33.1
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhc
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 68 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~ 68 (356)
..++|.+++|||||..+...+.. .. . +++++......-.++.+++.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~-~~----~-~~~~iat~~~~~~e~~~ri~~h~~ 51 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQ-SG----L-QVLYIATAQPFDDEMAARIAHHRQ 51 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHH-cC----C-CcEeCcCCCCChHHHHHHHHHHHh
Confidence 35789999999999765544333 21 1 467777766666777777765543
No 473
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.36 E-value=0.54 Score=46.05 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
++.++++||+|+|||..+
T Consensus 212 ~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CceEEEECCCCCChHHHH
Confidence 467899999999999653
No 474
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.34 E-value=0.2 Score=43.93 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
++++..+|+|+|||..+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 57899999999999653
No 475
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.33 E-value=0.57 Score=36.42 Aligned_cols=49 Identities=6% Similarity=0.066 Sum_probs=35.0
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhcc
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 69 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~ 69 (356)
++|.+++|||||..+...+.. .. .+++|+.....+-..+.+++.+....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~--~~~~y~at~~~~d~em~~rI~~H~~~ 50 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LG--GPVTYIATAEAFDDEMAERIARHRKR 50 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cC--CCeEEEEccCcCCHHHHHHHHHHHHh
Confidence 578999999999765544433 11 26889888888877788877765433
No 476
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.33 E-value=0.14 Score=52.71 Aligned_cols=58 Identities=17% Similarity=0.085 Sum_probs=45.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhcc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTY 69 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~ 69 (356)
.++++|.|+.|||||.+....++..+..+....++++++-|+.-+..+.+++......
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~~ 67 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLGE 67 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 5789999999999998776655555544443448999999999999999998876643
No 477
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.29 E-value=0.097 Score=48.15 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=18.4
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCC
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEP 39 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~ 39 (356)
-+++.+|||||||+. +.+++..+..
T Consensus 244 lilitGptGSGKTTt-L~a~L~~l~~ 268 (486)
T TIGR02533 244 IILVTGPTGSGKTTT-LYAALSRLNT 268 (486)
T ss_pred EEEEEcCCCCCHHHH-HHHHHhccCC
Confidence 468999999999977 4445565543
No 478
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.26 E-value=0.076 Score=43.34 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 50 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~ 50 (356)
|.-++|.+++|+|||..++..+......+. +++|+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~---~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGK---KVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEE
Confidence 456789999999999776655554443322 678874
No 479
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.25 E-value=0.063 Score=33.57 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
++..++.+|+|+|||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999653
No 480
>PRK05595 replicative DNA helicase; Provisional
Probab=93.21 E-value=0.23 Score=45.40 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=57.4
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCc-CCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHhHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQT-EPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHKD 89 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~-~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~ 89 (356)
|.-++|-|.||.|||...+-.+.... ..+. ++++++.- .-.+|+..++....... ....+. |..+...+..
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~---~vl~fSlE-ms~~~l~~R~~a~~~~v---~~~~~~~~~l~~~e~~~ 273 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGK---SVAIFSLE-MSKEQLAYKLLCSEANV---DMLRLRTGNLEDKDWEN 273 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCC---cEEEEecC-CCHHHHHHHHHHHhcCC---CHHHHhcCCCCHHHHHH
Confidence 44568899999999976554443322 2221 57777653 44666776655544332 222121 2222222211
Q ss_pred ------HHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 90 ------LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 90 ------~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
.+.. ..+.|- |++.+....+.... -.++++||||-.|.+..
T Consensus 274 ~~~~~~~l~~--~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~ 325 (444)
T PRK05595 274 IARASGPLAA--AKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSG 325 (444)
T ss_pred HHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccC
Confidence 1111 134443 34444443332211 13578999999999864
No 481
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.21 E-value=0.68 Score=45.61 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..+++++|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999664
No 482
>PRK07773 replicative DNA helicase; Validated
Probab=93.19 E-value=0.25 Score=49.26 Aligned_cols=113 Identities=17% Similarity=0.105 Sum_probs=58.4
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE-cCcchHHhH--
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY-GGVNIKIHK-- 88 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~-- 88 (356)
|.-++|.|+||+|||..++-.+........ . ++++++- -.-..|+..++....... ....+. |......+.
T Consensus 217 G~livIagrPg~GKT~fal~ia~~~a~~~~-~-~V~~fSl-Ems~~ql~~R~~s~~~~i---~~~~i~~g~l~~~~~~~~ 290 (886)
T PRK07773 217 GQLIIVAARPSMGKTTFGLDFARNCAIRHR-L-AVAIFSL-EMSKEQLVMRLLSAEAKI---KLSDMRSGRMSDDDWTRL 290 (886)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhcC-C-eEEEEec-CCCHHHHHHHHHHHhcCC---CHHHHhcCCCCHHHHHHH
Confidence 455789999999999776555544433211 1 5666653 344667776665543322 211111 212221211
Q ss_pred ----HHHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 89 ----DLLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 89 ----~~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
..+.. ..+.|. |++.+....+.-.. -.++++||||-.+.+..
T Consensus 291 ~~a~~~l~~--~~i~i~d~~~~~i~~i~~~~r~~~~-~~~~~lvvIDyLql~~~ 341 (886)
T PRK07773 291 ARAMGEISE--APIFIDDTPNLTVMEIRAKARRLRQ-EANLGLIVVDYLQLMTS 341 (886)
T ss_pred HHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchhhcCC
Confidence 11222 245542 45555443322111 13578999999998864
No 483
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.14 E-value=0.18 Score=47.48 Aligned_cols=49 Identities=22% Similarity=0.062 Sum_probs=37.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 65 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~ 65 (356)
..++++.||||||||..++++-+..... -++++=|.-++...+....++
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~~~-----S~VV~DpKGEl~~~Ta~~R~~ 206 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFWED-----SVVVHDIKLENYELTSGWREK 206 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhCCC-----CEEEEeCcHHHHHHHHHHHHH
Confidence 3578999999999999888777766532 478888988888776654444
No 484
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.12 E-value=0.41 Score=47.52 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
..+.+++||+|+|||.+.-
T Consensus 199 ~~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred cCceEEECCCCCCHHHHHH
Confidence 3578999999999997653
No 485
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.11 E-value=1.7 Score=40.23 Aligned_cols=77 Identities=13% Similarity=0.210 Sum_probs=62.3
Q ss_pred CCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-cccC------C-CCCCCCE
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGRG------I-DIERVNI 288 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~~~G------~-d~~~~~~ 288 (356)
.+.+||.+|+++.+.+....|...++.+..+++..+..++..++.....++.+++++|+. +... + ....++.
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 367999999999999999999999999999999999999999999899999999999963 2222 1 3455666
Q ss_pred EEEec
Q 018420 289 VINYD 293 (356)
Q Consensus 289 vi~~~ 293 (356)
+|+-.
T Consensus 131 iViDE 135 (470)
T TIGR00614 131 IAVDE 135 (470)
T ss_pred EEEeC
Confidence 66444
No 486
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=93.10 E-value=0.079 Score=49.88 Aligned_cols=63 Identities=19% Similarity=0.071 Sum_probs=45.7
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC---CCCeeEEEEcCchHHHHHHHHHHH
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTRELAYQICHEFE 64 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~vlii~P~~~l~~q~~~~~~ 64 (356)
|..|....+..+--++.+|+|+|||++.+.++-..+... ....+++++|=|...++|....+.
T Consensus 383 q~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 383 QQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred HHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 566777777777789999999999988765544433332 233478999999888888766554
No 487
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.08 E-value=0.1 Score=44.42 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 347899999999999765
No 488
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.07 E-value=0.11 Score=45.74 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=20.0
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
.+..+++++|||||||+. +.+++..+.
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 356789999999999976 455555553
No 489
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.04 E-value=0.17 Score=38.33 Aligned_cols=28 Identities=25% Similarity=0.514 Sum_probs=20.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN 40 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~ 40 (356)
...++|.+++|+|||+. +.-+.+.+...
T Consensus 5 ~mki~ITG~PGvGKtTl-~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTL-VLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHH-HHHHHHHHHhc
Confidence 35689999999999977 45555555444
No 490
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.01 E-value=2.2 Score=36.76 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
++++++.+|-|||||...
T Consensus 49 snsviiigprgsgkT~li 66 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILI 66 (408)
T ss_pred CCceEEEccCCCCceEee
Confidence 688999999999999543
No 491
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.01 E-value=0.44 Score=47.43 Aligned_cols=19 Identities=26% Similarity=0.407 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
..+.+++||+|+|||.+.-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 4678999999999997643
No 492
>PLN02165 adenylate isopentenyltransferase
Probab=92.97 E-value=0.067 Score=46.07 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=17.2
Q ss_pred hcCCcEEEEccCCCccchHhHH
Q 018420 10 ILGMDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~ 31 (356)
..++.++|.||||||||..+..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHH
Confidence 3466789999999999976543
No 493
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=92.93 E-value=0.12 Score=44.55 Aligned_cols=45 Identities=13% Similarity=0.060 Sum_probs=31.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 59 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~ 59 (356)
|.-+.|.+|+|+|||..++..+......+. +++|+.+-.++-.+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~---~~vyId~E~~~~~~~ 99 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGG---TVAFIDAEHALDPVY 99 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC---CEEEECccccHHHHH
Confidence 456789999999999876665555444322 688888766655543
No 494
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.82 E-value=0.11 Score=47.87 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=36.7
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|..++|.+|+|+|||+..+..+...+..+. +++|++ .-+-.+|...+.+++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge---~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKE---RAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEE-eeCCHHHHHHHHHHc
Confidence 556899999999999776655555544332 688877 456677888877665
No 495
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=92.73 E-value=0.16 Score=42.79 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=25.5
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHH
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTREL 55 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l 55 (356)
.+|.||||+||+...- .++..-.-.+....|++|+|.+.-
T Consensus 90 ~~VYGPTG~GKSqLlR-NLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR-NLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHHHHH-HhhhcCcccCCCCceEEECCCCCC
Confidence 5789999999995422 222222223334479999997654
No 496
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.71 E-value=0.34 Score=47.97 Aligned_cols=19 Identities=32% Similarity=0.380 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
.++.++.||+|+|||.++-
T Consensus 200 ~~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAE 218 (821)
T ss_pred cCCeEEECCCCCCHHHHHH
Confidence 4589999999999997653
No 497
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.70 E-value=0.069 Score=42.54 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=13.6
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.++++++.+|+|+|||..+
T Consensus 21 G~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp CC--EEEES-CCCTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHH
Confidence 3689999999999999653
No 498
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.67 E-value=0.084 Score=38.39 Aligned_cols=16 Identities=25% Similarity=0.447 Sum_probs=13.6
Q ss_pred EEEEccCCCccchHhH
Q 018420 15 VICQAKSGMGKTAVFV 30 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~ 30 (356)
++|.|++|||||+.+-
T Consensus 2 I~I~G~~gsGKST~a~ 17 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAK 17 (121)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999997643
No 499
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.16 Score=43.63 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQ 58 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q 58 (356)
-+-+++.+|+|+|||+.+ -+...+... .+|=+.-.+|++.
T Consensus 185 PKGVLLYGPPGTGKTLLA-kAVA~~T~A------tFIrvvgSElVqK 224 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLA-KAVANQTDA------TFIRVVGSELVQK 224 (406)
T ss_pred CCceEeeCCCCCcHHHHH-HHHHhccCc------eEEEeccHHHHHH
Confidence 467999999999999763 444444442 3444445566654
No 500
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.65 E-value=0.14 Score=42.04 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=26.8
Q ss_pred hHhcCC-cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC
Q 018420 8 QAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 51 (356)
Q Consensus 8 ~~~~~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P 51 (356)
.++... +++|.|++|||||.. +..++....... ..+++++|
T Consensus 8 ~l~~~~fr~viIG~sGSGKT~l-i~~lL~~~~~~f--~~I~l~t~ 49 (241)
T PF04665_consen 8 SLLKDPFRMVIIGKSGSGKTTL-IKSLLYYLRHKF--DHIFLITP 49 (241)
T ss_pred HhcCCCceEEEECCCCCCHHHH-HHHHHHhhcccC--CEEEEEec
Confidence 344443 789999999999965 444444444433 26777777
Done!