Query 018420
Match_columns 356
No_of_seqs 140 out of 1483
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 14:59:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xti_A Probable ATP-dependent 100.0 3.2E-57 1.1E-61 404.1 37.9 355 1-355 34-388 (391)
2 2db3_A ATP-dependent RNA helic 100.0 7.8E-56 2.7E-60 398.4 36.0 345 1-350 82-433 (434)
3 2j0s_A ATP-dependent RNA helic 100.0 4.2E-54 1.4E-58 386.2 35.3 344 1-349 63-407 (410)
4 1s2m_A Putative ATP-dependent 100.0 1.2E-53 4.1E-58 382.1 36.7 348 1-354 47-394 (400)
5 3eiq_A Eukaryotic initiation f 100.0 3.6E-54 1.2E-58 387.3 30.4 346 1-350 66-412 (414)
6 3fht_A ATP-dependent RNA helic 100.0 7.6E-53 2.6E-57 378.5 32.4 342 1-347 51-402 (412)
7 2i4i_A ATP-dependent RNA helic 100.0 7.4E-53 2.5E-57 379.1 31.5 344 1-349 41-407 (417)
8 3pey_A ATP-dependent RNA helic 100.0 4.8E-52 1.7E-56 371.2 33.9 338 1-345 31-378 (395)
9 1hv8_A Putative ATP-dependent 100.0 3.3E-51 1.1E-55 362.2 37.0 333 1-345 32-365 (367)
10 1fuu_A Yeast initiation factor 100.0 3.6E-53 1.2E-57 378.3 16.9 343 1-349 47-390 (394)
11 3fho_A ATP-dependent RNA helic 100.0 1.5E-51 5E-56 377.3 25.7 339 1-346 145-492 (508)
12 3fmp_B ATP-dependent RNA helic 100.0 1.3E-52 4.4E-57 383.3 16.1 341 1-346 118-468 (479)
13 2z0m_A 337AA long hypothetical 100.0 2E-49 6.9E-54 346.7 30.4 316 1-338 20-335 (337)
14 3sqw_A ATP-dependent RNA helic 100.0 1.2E-49 4.3E-54 370.9 29.0 340 1-342 47-415 (579)
15 3i5x_A ATP-dependent RNA helic 100.0 2.9E-49 9.8E-54 368.4 29.1 341 1-343 98-467 (563)
16 2v1x_A ATP-dependent DNA helic 100.0 1.7E-47 6E-52 353.4 30.7 309 1-324 48-374 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 4.8E-47 1.6E-51 347.3 27.4 306 1-324 29-343 (523)
18 3oiy_A Reverse gyrase helicase 100.0 1.9E-47 6.7E-52 343.0 22.0 313 1-338 25-376 (414)
19 1wp9_A ATP-dependent RNA helic 100.0 3.2E-44 1.1E-48 329.5 27.7 319 2-328 14-479 (494)
20 4a2p_A RIG-I, retinoic acid in 100.0 2.5E-44 8.7E-49 335.2 26.0 322 1-326 11-510 (556)
21 2ykg_A Probable ATP-dependent 100.0 1.6E-45 5.3E-50 351.6 18.0 319 1-323 17-515 (696)
22 3tbk_A RIG-I helicase domain; 100.0 2.9E-44 9.8E-49 334.8 25.7 320 1-324 8-507 (555)
23 3l9o_A ATP-dependent RNA helic 100.0 1.4E-43 4.9E-48 346.7 27.4 316 1-333 188-606 (1108)
24 2xgj_A ATP-dependent RNA helic 100.0 7.1E-43 2.4E-47 339.1 30.6 313 1-333 90-508 (1010)
25 4a2q_A RIG-I, retinoic acid in 100.0 1.9E-43 6.4E-48 340.2 25.8 321 1-325 252-750 (797)
26 2p6r_A Afuhel308 helicase; pro 100.0 1E-42 3.4E-47 331.2 25.6 308 1-324 29-388 (702)
27 4a2w_A RIG-I, retinoic acid in 100.0 2E-42 6.7E-47 336.3 26.8 321 1-325 252-750 (936)
28 2va8_A SSO2462, SKI2-type heli 100.0 5.6E-42 1.9E-46 327.1 28.7 307 1-323 34-407 (715)
29 2zj8_A DNA helicase, putative 100.0 7.7E-43 2.6E-47 332.8 22.2 329 1-347 27-407 (720)
30 4gl2_A Interferon-induced heli 100.0 8.4E-43 2.9E-47 332.9 19.7 319 1-325 11-519 (699)
31 4ddu_A Reverse gyrase; topoiso 100.0 2.1E-42 7.3E-47 338.4 22.6 313 1-338 82-503 (1104)
32 4a4z_A Antiviral helicase SKI2 100.0 2.6E-41 8.8E-46 328.2 28.7 304 1-321 43-489 (997)
33 2oca_A DAR protein, ATP-depend 100.0 1E-41 3.5E-46 313.8 17.5 305 2-322 118-453 (510)
34 2eyq_A TRCF, transcription-rep 100.0 1.8E-39 6.1E-44 319.7 32.2 303 1-323 607-921 (1151)
35 1gku_B Reverse gyrase, TOP-RG; 100.0 2E-41 6.9E-46 331.8 15.7 313 1-339 60-468 (1054)
36 1gm5_A RECG; helicase, replica 100.0 8.5E-41 2.9E-45 315.1 17.5 313 1-334 372-706 (780)
37 2fwr_A DNA repair protein RAD2 100.0 4E-41 1.4E-45 306.9 12.3 292 2-328 98-458 (472)
38 4f92_B U5 small nuclear ribonu 100.0 9.6E-40 3.3E-44 330.2 21.8 321 1-331 83-480 (1724)
39 4f92_B U5 small nuclear ribonu 100.0 7.9E-39 2.7E-43 323.6 27.9 315 1-324 930-1308(1724)
40 1yks_A Genome polyprotein [con 100.0 1.9E-41 6.5E-46 304.0 5.5 299 8-348 4-325 (440)
41 1tf5_A Preprotein translocase 100.0 4E-38 1.4E-42 291.7 27.5 315 1-326 87-547 (844)
42 2whx_A Serine protease/ntpase/ 100.0 1.9E-39 6.4E-44 300.7 18.0 304 1-346 175-502 (618)
43 2jlq_A Serine protease subunit 100.0 7.1E-39 2.4E-43 288.7 19.4 278 3-322 9-309 (451)
44 3o8b_A HCV NS3 protease/helica 100.0 3E-38 1E-42 290.1 22.0 272 2-326 222-516 (666)
45 2z83_A Helicase/nucleoside tri 100.0 8.2E-39 2.8E-43 288.7 17.6 282 2-324 11-313 (459)
46 2fsf_A Preprotein translocase 100.0 3.6E-37 1.2E-41 284.6 26.7 315 1-326 78-585 (853)
47 2wv9_A Flavivirin protease NS2 100.0 2.7E-38 9.4E-43 294.6 17.5 300 4-345 227-556 (673)
48 2v6i_A RNA helicase; membrane, 100.0 2.3E-37 7.8E-42 277.1 20.7 270 11-322 1-288 (431)
49 1nkt_A Preprotein translocase 100.0 2.1E-36 7.3E-41 279.8 27.5 315 1-326 115-619 (922)
50 3h1t_A Type I site-specific re 100.0 1.2E-37 4.2E-42 291.0 17.8 305 2-324 183-558 (590)
51 3dmq_A RNA polymerase-associat 100.0 5.4E-37 1.8E-41 298.5 19.3 314 2-321 158-610 (968)
52 2xau_A PRE-mRNA-splicing facto 100.0 1.2E-36 4.3E-41 288.7 17.3 305 2-323 98-442 (773)
53 1z63_A Helicase of the SNF2/RA 100.0 7.6E-36 2.6E-40 274.0 21.2 299 2-319 42-446 (500)
54 3rc3_A ATP-dependent RNA helic 100.0 8.3E-34 2.9E-38 263.7 23.9 263 10-314 153-432 (677)
55 3mwy_W Chromo domain-containin 100.0 2.8E-33 9.5E-38 268.8 24.3 328 2-339 241-700 (800)
56 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 6.9E-33 2.4E-37 267.8 24.2 298 2-314 276-695 (1038)
57 1z3i_X Similar to RAD54-like; 100.0 9.4E-32 3.2E-36 252.1 30.3 326 2-336 60-541 (644)
58 3jux_A Protein translocase sub 100.0 3E-30 1E-34 234.1 29.0 303 9-325 87-588 (822)
59 1t6n_A Probable ATP-dependent 100.0 4.3E-31 1.5E-35 216.1 18.1 180 1-180 40-219 (220)
60 1vec_A ATP-dependent RNA helic 100.0 2.4E-30 8.2E-35 209.5 19.2 177 1-179 29-205 (206)
61 3fe2_A Probable ATP-dependent 100.0 1.1E-30 3.9E-35 216.5 16.4 181 1-184 55-240 (242)
62 2oxc_A Probable ATP-dependent 100.0 2.3E-30 8E-35 212.9 17.3 178 1-180 50-227 (230)
63 3iuy_A Probable ATP-dependent 100.0 4.1E-30 1.4E-34 211.4 16.2 176 1-180 46-227 (228)
64 3bor_A Human initiation factor 100.0 3.4E-30 1.2E-34 212.8 15.5 179 1-181 56-234 (237)
65 1q0u_A Bstdead; DEAD protein, 100.0 4.5E-30 1.5E-34 209.8 15.1 180 1-182 30-212 (219)
66 3ber_A Probable ATP-dependent 100.0 9.3E-30 3.2E-34 211.4 17.1 178 1-181 69-247 (249)
67 1qde_A EIF4A, translation init 100.0 9.9E-30 3.4E-34 208.6 16.8 178 1-182 40-217 (224)
68 3fmo_B ATP-dependent RNA helic 100.0 1E-29 3.6E-34 216.5 15.7 178 1-182 118-298 (300)
69 1t5i_A C_terminal domain of A 100.0 3.7E-29 1.3E-33 195.5 15.9 166 190-355 4-169 (172)
70 2gxq_A Heat resistant RNA depe 100.0 6E-29 2.1E-33 201.5 17.6 176 1-181 27-205 (207)
71 1wrb_A DJVLGB; RNA helicase, D 100.0 8.7E-29 3E-33 206.7 17.2 181 1-184 49-242 (253)
72 2pl3_A Probable ATP-dependent 100.0 5.9E-29 2E-33 205.6 15.2 178 1-182 51-233 (236)
73 3ly5_A ATP-dependent RNA helic 100.0 5.1E-29 1.8E-33 208.6 13.8 174 1-177 80-258 (262)
74 3dkp_A Probable ATP-dependent 100.0 6.1E-29 2.1E-33 206.7 12.9 183 1-184 55-243 (245)
75 2hjv_A ATP-dependent RNA helic 100.0 4.8E-27 1.7E-31 182.1 18.9 155 189-344 7-161 (163)
76 1fuk_A Eukaryotic initiation f 100.0 6.2E-27 2.1E-31 182.0 19.5 158 191-349 3-161 (165)
77 2p6n_A ATP-dependent RNA helic 100.0 2.4E-27 8.1E-32 188.0 16.3 176 172-349 11-186 (191)
78 2ipc_A Preprotein translocase 99.9 1.2E-25 4.2E-30 207.8 27.8 123 1-132 83-215 (997)
79 2rb4_A ATP-dependent RNA helic 99.9 1.5E-26 5.1E-31 181.6 18.6 157 189-346 5-168 (175)
80 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.5E-26 5.3E-31 182.6 15.5 161 188-349 16-177 (185)
81 1c4o_A DNA nucleotide excision 99.9 3.2E-25 1.1E-29 207.7 26.9 108 216-324 438-550 (664)
82 2d7d_A Uvrabc system protein B 99.9 7.5E-25 2.6E-29 205.1 26.2 108 216-324 444-556 (661)
83 3eaq_A Heat resistant RNA depe 99.9 1.1E-25 3.8E-30 181.9 17.2 152 193-345 7-158 (212)
84 3i32_A Heat resistant RNA depe 99.9 9.8E-25 3.4E-29 184.2 17.7 152 193-345 4-155 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 1.1E-26 3.6E-31 181.5 0.0 152 193-345 5-157 (170)
86 2vl7_A XPD; helicase, unknown 99.9 2.6E-23 8.9E-28 191.1 15.1 102 216-323 383-520 (540)
87 3b6e_A Interferon-induced heli 99.9 8.4E-24 2.9E-28 172.3 6.6 157 1-160 37-216 (216)
88 3crv_A XPD/RAD3 related DNA he 99.9 6.7E-21 2.3E-25 175.7 24.2 299 8-324 18-531 (551)
89 1rif_A DAR protein, DNA helica 99.9 5.3E-22 1.8E-26 168.1 8.8 148 2-164 118-265 (282)
90 3llm_A ATP-dependent RNA helic 99.9 2.5E-21 8.4E-26 159.3 10.7 164 1-176 65-231 (235)
91 4a15_A XPD helicase, ATP-depen 99.8 3.3E-20 1.1E-24 172.4 16.0 103 217-323 448-583 (620)
92 2fz4_A DNA repair protein RAD2 99.8 1.1E-19 3.7E-24 149.3 12.6 134 1-164 97-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 1.8E-18 6.2E-23 144.3 13.7 124 201-324 94-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 3.6E-09 1.2E-13 98.4 6.9 143 2-160 154-298 (608)
95 4b3f_X DNA-binding protein smu 98.5 5.7E-08 2E-12 91.3 5.3 62 2-66 194-256 (646)
96 3e1s_A Exodeoxyribonuclease V, 98.4 4.6E-07 1.6E-11 83.5 7.6 118 2-160 194-315 (574)
97 2gk6_A Regulator of nonsense t 98.4 8.2E-07 2.8E-11 83.0 9.1 63 2-66 185-247 (624)
98 3lfu_A DNA helicase II; SF1 he 98.4 1.3E-05 4.5E-10 75.6 16.6 77 2-80 14-92 (647)
99 2xzl_A ATP-dependent helicase 98.3 2E-06 6.8E-11 82.3 10.2 63 2-66 365-427 (802)
100 2wjy_A Regulator of nonsense t 98.3 3.4E-06 1.2E-10 80.6 11.6 63 2-66 361-423 (800)
101 3upu_A ATP-dependent DNA helic 98.2 2.1E-06 7E-11 77.4 7.6 60 2-63 30-94 (459)
102 3hgt_A HDA1 complex subunit 3; 98.0 8.1E-05 2.8E-09 62.4 12.6 129 203-336 109-249 (328)
103 3vkw_A Replicase large subunit 97.6 0.00014 4.8E-09 63.9 8.3 107 14-160 163-269 (446)
104 2orw_A Thymidine kinase; TMTK, 97.5 0.00022 7.5E-09 55.4 6.5 39 12-53 3-41 (184)
105 1xx6_A Thymidine kinase; NESG, 97.3 0.00046 1.6E-08 53.8 6.1 40 11-53 7-46 (191)
106 3te6_A Regulatory protein SIR3 97.2 0.00096 3.3E-08 56.3 7.7 44 119-163 132-175 (318)
107 3ec2_A DNA replication protein 97.2 0.00038 1.3E-08 53.9 4.8 18 12-29 38-55 (180)
108 2j9r_A Thymidine kinase; TK1, 97.2 0.00044 1.5E-08 54.4 4.9 40 12-54 28-67 (214)
109 2o0j_A Terminase, DNA packagin 97.1 0.0034 1.2E-07 54.5 10.6 69 2-71 168-236 (385)
110 2b8t_A Thymidine kinase; deoxy 97.1 0.00026 9.1E-09 56.5 3.3 91 12-132 12-102 (223)
111 1uaa_A REP helicase, protein ( 97.1 0.0002 6.8E-09 67.8 2.8 77 2-80 7-86 (673)
112 3cpe_A Terminase, DNA packagin 97.1 0.006 2.1E-07 56.6 12.5 69 2-71 168-236 (592)
113 2chg_A Replication factor C sm 97.0 0.0027 9.2E-08 50.6 8.8 41 118-160 101-141 (226)
114 1l8q_A Chromosomal replication 97.0 0.0014 4.8E-08 55.9 7.3 17 13-29 38-54 (324)
115 1a5t_A Delta prime, HOLB; zinc 97.0 0.0021 7.1E-08 55.1 8.2 41 118-160 107-147 (334)
116 3bos_A Putative DNA replicatio 97.0 0.00061 2.1E-08 55.3 4.3 18 12-29 52-69 (242)
117 1pjr_A PCRA; DNA repair, DNA r 96.9 0.00055 1.9E-08 65.2 4.3 77 2-80 16-94 (724)
118 2gno_A DNA polymerase III, gam 96.8 0.0031 1E-07 53.2 7.6 39 118-158 81-119 (305)
119 2z4s_A Chromosomal replication 96.8 0.0065 2.2E-07 54.1 10.0 18 12-29 130-147 (440)
120 2orv_A Thymidine kinase; TP4A 96.8 0.0023 7.8E-08 50.9 6.1 40 12-54 19-58 (234)
121 3kl4_A SRP54, signal recogniti 96.8 0.0053 1.8E-07 54.1 9.0 55 118-172 178-234 (433)
122 2kjq_A DNAA-related protein; s 96.8 0.0011 3.9E-08 49.3 4.1 19 11-29 35-53 (149)
123 1w4r_A Thymidine kinase; type 96.7 0.0007 2.4E-08 52.4 2.7 38 12-52 20-57 (195)
124 3co5_A Putative two-component 96.7 0.00091 3.1E-08 49.5 3.2 18 11-28 26-43 (143)
125 3n70_A Transport activator; si 96.6 0.0047 1.6E-07 45.7 6.6 39 121-161 78-116 (145)
126 3u4q_A ATP-dependent helicase/ 96.6 0.0015 5.2E-08 65.9 4.7 64 2-67 15-81 (1232)
127 2zpa_A Uncharacterized protein 96.4 0.006 2.1E-07 56.5 7.0 108 2-162 180-289 (671)
128 3u61_B DNA polymerase accessor 96.4 0.007 2.4E-07 51.5 7.0 39 119-158 105-143 (324)
129 3syl_A Protein CBBX; photosynt 96.4 0.0022 7.5E-08 54.2 3.6 18 12-29 67-84 (309)
130 2w58_A DNAI, primosome compone 96.4 0.011 3.7E-07 46.5 7.4 17 13-29 55-71 (202)
131 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0012 4.1E-08 51.9 1.7 40 12-54 28-67 (219)
132 1iqp_A RFCS; clamp loader, ext 96.3 0.009 3.1E-07 50.8 7.4 41 118-160 109-149 (327)
133 3dm5_A SRP54, signal recogniti 96.3 0.018 6.1E-07 50.8 9.0 35 13-50 101-135 (443)
134 2v1u_A Cell division control p 96.2 0.0091 3.1E-07 52.1 6.7 18 12-29 44-61 (387)
135 1sxj_D Activator 1 41 kDa subu 96.1 0.007 2.4E-07 52.1 5.6 40 119-160 133-172 (353)
136 1fnn_A CDC6P, cell division co 96.1 0.0074 2.5E-07 52.7 5.9 16 14-29 46-61 (389)
137 1d2n_A N-ethylmaleimide-sensit 96.1 0.03 1E-06 46.2 9.3 18 13-30 65-82 (272)
138 2qby_B CDC6 homolog 3, cell di 96.1 0.012 4.2E-07 51.3 7.1 18 12-29 45-62 (384)
139 3eie_A Vacuolar protein sortin 95.9 0.015 5E-07 49.5 6.7 18 12-29 51-68 (322)
140 3h4m_A Proteasome-activating n 95.8 0.042 1.4E-06 45.7 8.9 19 11-29 50-68 (285)
141 1njg_A DNA polymerase III subu 95.7 0.048 1.6E-06 43.8 8.8 16 14-29 47-62 (250)
142 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.062 2.1E-06 43.9 9.5 18 12-29 39-56 (262)
143 1gm5_A RECG; helicase, replica 95.7 0.031 1.1E-06 53.3 8.5 79 217-295 417-500 (780)
144 1g5t_A COB(I)alamin adenosyltr 95.7 0.013 4.5E-07 45.3 4.9 136 13-168 29-170 (196)
145 1sxj_E Activator 1 40 kDa subu 95.7 0.039 1.3E-06 47.5 8.5 43 118-162 133-175 (354)
146 1sxj_B Activator 1 37 kDa subu 95.7 0.014 4.7E-07 49.6 5.4 39 119-159 107-145 (323)
147 2q6t_A DNAB replication FORK h 95.6 0.03 1E-06 50.0 7.7 114 12-133 200-324 (444)
148 3pvs_A Replication-associated 95.5 0.024 8.2E-07 50.5 6.4 17 13-29 51-67 (447)
149 1sxj_C Activator 1 40 kDa subu 95.4 0.028 9.7E-07 48.1 6.6 39 118-158 109-147 (340)
150 4a1f_A DNAB helicase, replicat 95.2 0.013 4.5E-07 49.8 3.8 51 12-66 46-96 (338)
151 2chq_A Replication factor C sm 95.1 0.0092 3.1E-07 50.5 2.5 16 14-29 40-55 (319)
152 3pfi_A Holliday junction ATP-d 95.0 0.088 3E-06 44.9 8.4 17 13-29 56-72 (338)
153 2r6a_A DNAB helicase, replicat 95.0 0.032 1.1E-06 49.9 5.6 49 12-63 203-251 (454)
154 2qby_A CDC6 homolog 1, cell di 94.8 0.022 7.4E-07 49.6 4.0 18 12-29 45-62 (386)
155 1jr3_A DNA polymerase III subu 94.6 0.083 2.8E-06 45.7 7.2 39 118-158 118-156 (373)
156 3hjh_A Transcription-repair-co 94.3 0.18 6.2E-06 45.2 8.9 75 206-293 372-446 (483)
157 3hu3_A Transitional endoplasmi 94.3 0.068 2.3E-06 48.1 6.1 19 12-30 238-256 (489)
158 3oiy_A Reverse gyrase helicase 94.2 0.11 3.9E-06 45.6 7.5 79 216-294 63-148 (414)
159 1t6n_A Probable ATP-dependent 93.9 0.29 9.9E-06 38.7 8.7 73 218-293 83-166 (220)
160 3cmu_A Protein RECA, recombina 93.3 0.075 2.6E-06 55.6 4.9 41 11-54 1426-1466(2050)
161 2hjv_A ATP-dependent RNA helic 93.2 0.6 2.1E-05 34.8 8.9 72 45-127 37-111 (163)
162 2oap_1 GSPE-2, type II secreti 93.2 0.077 2.6E-06 48.0 4.5 28 10-38 258-285 (511)
163 2px0_A Flagellar biosynthesis 92.9 0.21 7.1E-06 41.7 6.4 22 12-33 105-126 (296)
164 3ber_A Probable ATP-dependent 92.8 1.1 3.8E-05 36.1 10.5 74 216-293 110-194 (249)
165 2eyq_A TRCF, transcription-rep 92.7 0.29 9.9E-06 49.1 8.1 78 216-293 651-733 (1151)
166 2dr3_A UPF0273 protein PH0284; 92.7 0.062 2.1E-06 43.4 2.9 50 11-64 22-71 (247)
167 3cf2_A TER ATPase, transitiona 92.6 0.18 6E-06 48.2 6.1 17 13-29 239-255 (806)
168 1fuk_A Eukaryotic initiation f 92.6 0.98 3.3E-05 33.7 9.3 72 45-127 32-106 (165)
169 2fna_A Conserved hypothetical 92.5 2.1 7.2E-05 36.3 12.5 17 13-29 31-47 (357)
170 2p6n_A ATP-dependent RNA helic 92.4 1.1 3.7E-05 34.6 9.6 70 45-125 56-128 (191)
171 2qgz_A Helicase loader, putati 91.9 0.08 2.7E-06 44.6 2.7 19 12-30 152-170 (308)
172 1t5i_A C_terminal domain of A 91.8 1.8 6.1E-05 32.6 10.0 72 45-127 33-107 (172)
173 3b85_A Phosphate starvation-in 91.7 0.087 3E-06 41.5 2.5 27 3-29 13-39 (208)
174 2gza_A Type IV secretion syste 91.6 0.17 5.7E-06 43.7 4.4 28 10-38 173-200 (361)
175 2rb4_A ATP-dependent RNA helic 91.6 0.96 3.3E-05 34.2 8.3 95 15-125 11-108 (175)
176 4ddu_A Reverse gyrase; topoiso 91.4 0.38 1.3E-05 48.0 7.3 79 216-294 120-205 (1104)
177 1oyw_A RECQ helicase, ATP-depe 91.3 0.58 2E-05 42.6 7.9 59 217-275 65-123 (523)
178 3e70_C DPA, signal recognition 91.2 1.7 5.9E-05 36.7 10.2 51 119-169 211-261 (328)
179 1vec_A ATP-dependent RNA helic 91.1 1.4 4.6E-05 34.2 9.0 118 217-338 71-200 (206)
180 2z43_A DNA repair and recombin 91.0 0.23 7.9E-06 42.1 4.7 53 12-64 107-163 (324)
181 2pt7_A CAG-ALFA; ATPase, prote 91.0 0.21 7.1E-06 42.5 4.3 28 10-38 169-196 (330)
182 3bh0_A DNAB-like replicative h 90.9 0.27 9.3E-06 41.5 5.0 52 12-67 68-119 (315)
183 3vaa_A Shikimate kinase, SK; s 90.8 0.13 4.3E-06 40.1 2.6 21 10-30 23-43 (199)
184 1kgd_A CASK, peripheral plasma 90.7 0.13 4.3E-06 39.4 2.5 19 11-29 4-22 (180)
185 2qor_A Guanylate kinase; phosp 90.6 0.12 4.1E-06 40.5 2.3 23 8-30 8-30 (204)
186 1jbk_A CLPB protein; beta barr 90.5 0.13 4.5E-06 39.4 2.5 18 12-29 43-60 (195)
187 1ls1_A Signal recognition part 90.5 1.4 4.6E-05 36.7 8.8 21 12-32 98-118 (295)
188 1tue_A Replication protein E1; 90.3 0.11 3.6E-06 40.6 1.7 17 13-29 59-75 (212)
189 2oxc_A Probable ATP-dependent 90.3 0.54 1.8E-05 37.4 6.1 72 216-292 91-173 (230)
190 2eyu_A Twitching motility prot 90.3 0.12 3.9E-06 42.4 2.0 20 10-29 23-42 (261)
191 2jgn_A DBX, DDX3, ATP-dependen 90.2 0.97 3.3E-05 34.6 7.2 89 22-125 29-120 (185)
192 3u4q_B ATP-dependent helicase/ 90.1 0.1 3.4E-06 52.7 1.9 50 15-65 4-53 (1166)
193 2v1x_A ATP-dependent DNA helic 90.1 0.66 2.3E-05 42.9 7.2 59 217-275 84-144 (591)
194 3eaq_A Heat resistant RNA depe 90.1 1.9 6.4E-05 33.8 8.9 70 45-125 33-105 (212)
195 1p9r_A General secretion pathw 90.0 0.15 5.3E-06 44.7 2.8 26 12-38 167-192 (418)
196 2bjv_A PSP operon transcriptio 90.0 0.28 9.6E-06 40.1 4.2 19 11-29 28-46 (265)
197 2i1q_A DNA repair and recombin 90.0 0.27 9.1E-06 41.6 4.2 54 12-65 98-165 (322)
198 4b4t_M 26S protease regulatory 90.0 0.14 4.8E-06 45.1 2.4 18 12-29 215-232 (434)
199 2p65_A Hypothetical protein PF 89.8 0.12 4E-06 39.5 1.7 19 12-30 43-61 (187)
200 1lvg_A Guanylate kinase, GMP k 89.8 0.16 5.5E-06 39.5 2.5 19 11-29 3-21 (198)
201 3fe2_A Probable ATP-dependent 89.8 1.9 6.4E-05 34.5 8.9 73 217-293 102-184 (242)
202 2zts_A Putative uncharacterize 89.8 0.069 2.4E-06 43.2 0.3 51 12-65 30-80 (251)
203 3nbx_X ATPase RAVA; AAA+ ATPas 89.7 0.12 4.1E-06 46.6 1.9 23 7-29 36-58 (500)
204 2cvh_A DNA repair and recombin 89.7 0.15 5.2E-06 40.2 2.3 36 11-52 19-54 (220)
205 2r44_A Uncharacterized protein 89.6 0.12 4.1E-06 43.9 1.7 22 8-29 42-63 (331)
206 1u0j_A DNA replication protein 89.6 0.22 7.4E-06 40.7 3.1 17 14-30 106-122 (267)
207 3trf_A Shikimate kinase, SK; a 89.6 0.18 6.1E-06 38.6 2.6 20 12-31 5-24 (185)
208 3iij_A Coilin-interacting nucl 89.6 0.16 5.4E-06 38.8 2.3 21 10-30 9-29 (180)
209 4b4t_J 26S protease regulatory 89.6 0.16 5.4E-06 44.2 2.4 18 12-29 182-199 (405)
210 3tau_A Guanylate kinase, GMP k 89.4 0.19 6.5E-06 39.4 2.6 19 11-29 7-25 (208)
211 3io5_A Recombination and repai 89.3 0.09 3.1E-06 44.1 0.6 43 14-57 30-72 (333)
212 3cf0_A Transitional endoplasmi 89.3 0.18 6E-06 42.3 2.5 19 12-30 49-67 (301)
213 1e9r_A Conjugal transfer prote 89.3 0.17 5.8E-06 44.9 2.5 44 11-57 52-95 (437)
214 2qmh_A HPR kinase/phosphorylas 89.2 0.18 6.1E-06 39.1 2.2 19 12-30 34-52 (205)
215 3a8t_A Adenylate isopentenyltr 89.2 0.16 5.5E-06 43.0 2.1 20 13-32 41-60 (339)
216 1qhx_A CPT, protein (chloramph 89.2 0.2 6.9E-06 38.0 2.6 19 12-30 3-21 (178)
217 1w36_B RECB, exodeoxyribonucle 89.2 0.47 1.6E-05 47.9 5.7 55 13-67 17-80 (1180)
218 1xti_A Probable ATP-dependent 89.1 2.3 7.8E-05 36.6 9.6 74 217-293 76-160 (391)
219 1zp6_A Hypothetical protein AT 89.0 0.14 4.9E-06 39.4 1.6 21 9-29 6-26 (191)
220 1c9k_A COBU, adenosylcobinamid 89.0 0.27 9.4E-06 37.5 3.1 47 15-68 2-48 (180)
221 3b9p_A CG5977-PA, isoform A; A 89.0 0.19 6.4E-06 41.9 2.5 18 12-29 54-71 (297)
222 1n0w_A DNA repair protein RAD5 89.0 0.32 1.1E-05 39.0 3.7 41 12-52 24-67 (243)
223 2w0m_A SSO2452; RECA, SSPF, un 89.0 0.14 4.6E-06 40.9 1.5 50 11-64 22-71 (235)
224 2gxq_A Heat resistant RNA depe 88.9 2 6.9E-05 33.2 8.4 74 216-293 71-152 (207)
225 4b4t_L 26S protease subunit RP 88.9 0.19 6.3E-06 44.4 2.4 18 12-29 215-232 (437)
226 4b4t_K 26S protease regulatory 88.9 0.18 6.3E-06 44.3 2.4 18 12-29 206-223 (428)
227 2ffh_A Protein (FFH); SRP54, s 88.9 2.9 9.9E-05 36.7 9.9 36 12-50 98-133 (425)
228 3hr8_A Protein RECA; alpha and 88.9 0.14 4.7E-06 44.0 1.5 42 12-56 61-102 (356)
229 2j37_W Signal recognition part 88.8 2 7E-05 38.6 9.1 35 14-51 103-137 (504)
230 2j41_A Guanylate kinase; GMP, 88.7 0.22 7.6E-06 38.8 2.5 20 10-29 4-23 (207)
231 3tr0_A Guanylate kinase, GMP k 88.7 0.22 7.6E-06 38.8 2.5 20 10-29 5-24 (205)
232 1xwi_A SKD1 protein; VPS4B, AA 88.6 0.21 7.1E-06 42.3 2.5 18 13-30 46-63 (322)
233 3t15_A Ribulose bisphosphate c 88.6 0.2 6.7E-06 41.8 2.3 17 13-29 37-53 (293)
234 3lw7_A Adenylate kinase relate 88.5 0.17 5.8E-06 38.2 1.7 17 14-30 3-19 (179)
235 2r2a_A Uncharacterized protein 88.3 0.24 8.1E-06 38.6 2.4 23 14-36 7-29 (199)
236 1kag_A SKI, shikimate kinase I 88.3 0.26 8.9E-06 37.2 2.6 18 12-29 4-21 (173)
237 1y63_A LMAJ004144AAA protein; 88.3 0.26 8.7E-06 37.8 2.6 20 11-30 9-28 (184)
238 3uk6_A RUVB-like 2; hexameric 88.1 0.23 7.7E-06 42.9 2.4 18 13-30 71-88 (368)
239 3ney_A 55 kDa erythrocyte memb 88.1 0.26 9E-06 38.2 2.5 19 11-29 18-36 (197)
240 3hws_A ATP-dependent CLP prote 88.1 0.24 8.4E-06 42.7 2.6 19 12-30 51-69 (363)
241 3exa_A TRNA delta(2)-isopenten 88.0 0.22 7.4E-06 41.7 2.1 19 13-31 4-22 (322)
242 1lv7_A FTSH; alpha/beta domain 87.9 0.26 8.9E-06 40.1 2.6 18 12-29 45-62 (257)
243 1u94_A RECA protein, recombina 87.9 0.17 6E-06 43.4 1.5 40 12-54 63-102 (356)
244 1ofh_A ATP-dependent HSL prote 87.8 0.26 9E-06 41.2 2.6 18 12-29 50-67 (310)
245 4ag6_A VIRB4 ATPase, type IV s 87.8 0.29 9.8E-06 42.7 2.9 41 11-54 34-74 (392)
246 4b4t_I 26S protease regulatory 87.7 0.24 8.3E-06 43.3 2.3 18 12-29 216-233 (437)
247 4gp7_A Metallophosphoesterase; 87.7 0.15 5.3E-06 38.6 1.0 20 11-30 8-27 (171)
248 2d7d_A Uvrabc system protein B 87.7 9 0.00031 35.9 13.1 91 45-146 447-540 (661)
249 1z6g_A Guanylate kinase; struc 87.7 0.3 1E-05 38.7 2.7 20 10-29 21-40 (218)
250 1v5w_A DMC1, meiotic recombina 87.6 0.37 1.3E-05 41.2 3.4 42 12-53 122-166 (343)
251 2zr9_A Protein RECA, recombina 87.6 0.23 7.8E-06 42.6 2.1 39 12-53 61-99 (349)
252 1c4o_A DNA nucleotide excision 87.4 7.4 0.00025 36.5 12.4 92 45-147 441-535 (664)
253 3i5x_A ATP-dependent RNA helic 87.4 14 0.00047 33.7 14.1 75 45-127 341-418 (563)
254 3bor_A Human initiation factor 87.4 1.6 5.4E-05 34.9 6.9 74 216-292 97-180 (237)
255 4b4t_H 26S protease regulatory 87.3 0.23 7.8E-06 44.0 1.9 18 12-29 243-260 (467)
256 2qp9_X Vacuolar protein sortin 87.3 0.29 1E-05 42.0 2.6 18 12-29 84-101 (355)
257 1kht_A Adenylate kinase; phosp 87.3 0.31 1.1E-05 37.4 2.6 19 12-30 3-21 (192)
258 2l82_A Designed protein OR32; 87.3 3.3 0.00011 27.8 7.0 51 220-270 5-55 (162)
259 2ewv_A Twitching motility prot 87.3 0.23 7.7E-06 43.1 1.9 19 11-29 135-153 (372)
260 2l8b_A Protein TRAI, DNA helic 87.3 0.097 3.3E-06 39.7 -0.4 58 2-61 39-98 (189)
261 2ze6_A Isopentenyl transferase 87.2 0.27 9.2E-06 40.0 2.2 17 14-30 3-19 (253)
262 2ius_A DNA translocase FTSK; n 87.1 0.48 1.6E-05 42.7 3.9 44 9-52 164-208 (512)
263 3foz_A TRNA delta(2)-isopenten 87.1 0.28 9.6E-06 40.9 2.3 19 14-32 12-30 (316)
264 3ly5_A ATP-dependent RNA helic 87.1 2.5 8.4E-05 34.4 8.0 73 216-292 125-208 (262)
265 3jvv_A Twitching mobility prot 87.1 0.27 9.3E-06 42.2 2.2 25 12-37 123-147 (356)
266 3cm0_A Adenylate kinase; ATP-b 87.0 0.22 7.7E-06 38.1 1.6 20 11-30 3-22 (186)
267 1nlf_A Regulatory protein REPA 87.0 0.58 2E-05 38.5 4.2 24 9-32 27-50 (279)
268 2c9o_A RUVB-like 1; hexameric 87.0 0.3 1E-05 43.6 2.5 18 13-30 64-81 (456)
269 1s96_A Guanylate kinase, GMP k 86.9 0.34 1.2E-05 38.4 2.6 22 8-29 12-33 (219)
270 3a00_A Guanylate kinase, GMP k 86.9 0.34 1.2E-05 37.1 2.6 17 13-29 2-18 (186)
271 2r62_A Cell division protease 86.8 0.16 5.5E-06 41.6 0.7 18 12-29 44-61 (268)
272 1ex7_A Guanylate kinase; subst 86.6 0.3 1E-05 37.6 2.0 17 13-29 2-18 (186)
273 2xxa_A Signal recognition part 86.6 3.2 0.00011 36.6 8.9 34 14-50 102-136 (433)
274 1ly1_A Polynucleotide kinase; 86.5 0.32 1.1E-05 36.8 2.2 17 14-30 4-20 (181)
275 3umf_A Adenylate kinase; rossm 86.5 0.25 8.6E-06 39.0 1.6 20 11-30 28-47 (217)
276 3kb2_A SPBC2 prophage-derived 86.5 0.32 1.1E-05 36.5 2.2 17 14-30 3-19 (173)
277 2i4i_A ATP-dependent RNA helic 86.5 4.8 0.00016 35.0 10.1 70 45-125 278-350 (417)
278 2bwj_A Adenylate kinase 5; pho 86.4 0.42 1.4E-05 36.9 2.9 22 8-29 8-29 (199)
279 1um8_A ATP-dependent CLP prote 86.3 0.35 1.2E-05 41.9 2.6 19 12-30 72-90 (376)
280 3vfd_A Spastin; ATPase, microt 86.2 0.62 2.1E-05 40.6 4.1 19 12-30 148-166 (389)
281 3sqw_A ATP-dependent RNA helic 86.2 17 0.0006 33.2 14.1 76 45-128 290-368 (579)
282 3cmw_A Protein RECA, recombina 86.2 0.19 6.7E-06 51.8 1.0 45 12-59 1431-1475(1706)
283 4eun_A Thermoresistant glucoki 86.0 0.41 1.4E-05 37.2 2.6 18 12-29 29-46 (200)
284 3d8b_A Fidgetin-like protein 1 85.9 0.37 1.3E-05 41.4 2.5 19 12-30 117-135 (357)
285 3bgw_A DNAB-like replicative h 85.8 0.35 1.2E-05 42.9 2.4 51 12-66 197-247 (444)
286 2c95_A Adenylate kinase 1; tra 85.8 0.43 1.5E-05 36.8 2.6 21 10-30 7-27 (196)
287 1znw_A Guanylate kinase, GMP k 85.8 0.42 1.4E-05 37.4 2.6 21 9-29 17-37 (207)
288 2r8r_A Sensor protein; KDPD, P 85.8 0.39 1.3E-05 38.1 2.4 27 14-40 8-34 (228)
289 3lnc_A Guanylate kinase, GMP k 85.6 0.29 9.9E-06 39.1 1.6 19 11-29 26-44 (231)
290 3iuy_A Probable ATP-dependent 85.6 2.4 8.1E-05 33.5 7.0 74 216-293 93-175 (228)
291 1xp8_A RECA protein, recombina 85.6 0.34 1.2E-05 41.8 2.1 40 12-54 74-113 (366)
292 1knq_A Gluconate kinase; ALFA/ 85.6 0.36 1.2E-05 36.5 2.1 18 12-29 8-25 (175)
293 2v54_A DTMP kinase, thymidylat 85.5 0.39 1.3E-05 37.3 2.3 21 11-31 3-23 (204)
294 3crm_A TRNA delta(2)-isopenten 85.5 0.38 1.3E-05 40.5 2.3 18 14-31 7-24 (323)
295 2iut_A DNA translocase FTSK; n 85.4 0.7 2.4E-05 42.1 4.1 44 10-53 212-256 (574)
296 1qde_A EIF4A, translation init 85.2 1.6 5.4E-05 34.4 5.8 73 216-293 81-163 (224)
297 2pl3_A Probable ATP-dependent 85.1 2.7 9.1E-05 33.4 7.2 72 216-292 96-178 (236)
298 3nwj_A ATSK2; P loop, shikimat 85.1 0.56 1.9E-05 38.0 3.0 20 11-30 47-66 (250)
299 2ehv_A Hypothetical protein PH 85.0 0.39 1.3E-05 38.7 2.1 20 11-30 29-48 (251)
300 1cr0_A DNA primase/helicase; R 84.9 0.42 1.4E-05 39.8 2.4 39 11-51 34-72 (296)
301 1gvn_B Zeta; postsegregational 84.9 0.34 1.2E-05 40.2 1.7 18 13-30 34-51 (287)
302 2rhm_A Putative kinase; P-loop 84.8 0.35 1.2E-05 37.2 1.7 19 12-30 5-23 (193)
303 1zuh_A Shikimate kinase; alpha 84.8 0.47 1.6E-05 35.5 2.4 19 13-31 8-26 (168)
304 1in4_A RUVB, holliday junction 84.8 0.44 1.5E-05 40.5 2.5 17 13-29 52-68 (334)
305 2qt1_A Nicotinamide riboside k 84.8 0.27 9.1E-06 38.5 1.0 21 9-29 18-38 (207)
306 1ojl_A Transcriptional regulat 84.8 0.33 1.1E-05 40.7 1.6 18 12-29 25-42 (304)
307 2zan_A Vacuolar protein sortin 84.8 0.44 1.5E-05 42.4 2.5 19 12-30 167-185 (444)
308 3uie_A Adenylyl-sulfate kinase 84.8 0.41 1.4E-05 37.2 2.1 18 12-29 25-42 (200)
309 1ixz_A ATP-dependent metallopr 84.7 0.47 1.6E-05 38.4 2.5 17 13-29 50-66 (254)
310 1via_A Shikimate kinase; struc 84.5 0.5 1.7E-05 35.7 2.5 18 13-30 5-22 (175)
311 1wrb_A DJVLGB; RNA helicase, D 84.4 7.1 0.00024 31.2 9.5 73 217-293 100-182 (253)
312 1hqc_A RUVB; extended AAA-ATPa 84.3 0.46 1.6E-05 40.0 2.4 17 13-29 39-55 (324)
313 1vma_A Cell division protein F 84.2 0.45 1.5E-05 39.8 2.2 22 12-33 104-125 (306)
314 3d3q_A TRNA delta(2)-isopenten 84.1 0.48 1.6E-05 40.2 2.3 17 14-30 9-25 (340)
315 1aky_A Adenylate kinase; ATP:A 84.0 0.57 1.9E-05 37.0 2.6 19 12-30 4-22 (220)
316 1rj9_A FTSY, signal recognitio 83.9 0.69 2.4E-05 38.7 3.2 19 12-30 102-120 (304)
317 2v9p_A Replication protein E1; 83.9 0.5 1.7E-05 39.5 2.3 19 11-29 125-143 (305)
318 1zd8_A GTP:AMP phosphotransfer 83.9 0.54 1.8E-05 37.3 2.5 20 11-30 6-25 (227)
319 4fcw_A Chaperone protein CLPB; 83.9 0.47 1.6E-05 39.7 2.2 17 13-29 48-64 (311)
320 1ye8_A Protein THEP1, hypothet 83.7 0.57 1.9E-05 35.7 2.4 16 14-29 2-17 (178)
321 2iyv_A Shikimate kinase, SK; t 83.7 0.61 2.1E-05 35.5 2.6 18 13-30 3-20 (184)
322 2bdt_A BH3686; alpha-beta prot 83.6 0.4 1.4E-05 36.8 1.5 18 14-31 4-21 (189)
323 3c8u_A Fructokinase; YP_612366 83.6 0.54 1.8E-05 36.8 2.3 18 12-29 22-39 (208)
324 1g8p_A Magnesium-chelatase 38 83.6 0.42 1.4E-05 40.8 1.8 18 12-29 45-62 (350)
325 3t61_A Gluconokinase; PSI-biol 83.5 0.57 1.9E-05 36.4 2.4 18 13-30 19-36 (202)
326 3fb4_A Adenylate kinase; psych 83.4 0.57 2E-05 36.8 2.4 17 14-30 2-18 (216)
327 4a74_A DNA repair and recombin 83.4 0.4 1.4E-05 38.0 1.5 20 12-31 25-44 (231)
328 2vli_A Antibiotic resistance p 83.3 0.61 2.1E-05 35.4 2.5 21 11-31 4-24 (183)
329 1zak_A Adenylate kinase; ATP:A 83.2 0.59 2E-05 36.9 2.4 19 12-30 5-23 (222)
330 3sr0_A Adenylate kinase; phosp 83.2 0.6 2.1E-05 36.5 2.4 18 14-31 2-19 (206)
331 2plr_A DTMP kinase, probable t 83.1 0.51 1.7E-05 36.8 2.0 20 11-30 3-22 (213)
332 3pey_A ATP-dependent RNA helic 83.1 20 0.0007 30.5 12.5 74 45-129 245-321 (395)
333 3dl0_A Adenylate kinase; phosp 83.1 0.6 2E-05 36.7 2.4 18 14-31 2-19 (216)
334 2cdn_A Adenylate kinase; phosp 83.1 0.66 2.3E-05 36.0 2.6 19 12-30 20-38 (201)
335 2x8a_A Nuclear valosin-contain 83.0 0.56 1.9E-05 38.6 2.3 17 13-29 45-61 (274)
336 1tev_A UMP-CMP kinase; ploop, 83.0 0.53 1.8E-05 36.1 2.0 19 12-30 3-21 (196)
337 3i32_A Heat resistant RNA depe 83.0 4.4 0.00015 33.7 7.8 70 45-125 30-102 (300)
338 1nks_A Adenylate kinase; therm 82.8 0.57 2E-05 35.9 2.2 17 14-30 3-19 (194)
339 1e6c_A Shikimate kinase; phosp 82.7 0.67 2.3E-05 34.8 2.5 18 13-30 3-20 (173)
340 3lda_A DNA repair protein RAD5 82.7 0.95 3.2E-05 39.5 3.7 42 12-53 178-222 (400)
341 3eph_A TRNA isopentenyltransfe 82.4 0.57 1.9E-05 40.7 2.1 17 14-30 4-20 (409)
342 1iy2_A ATP-dependent metallopr 82.3 0.69 2.3E-05 38.1 2.6 17 13-29 74-90 (278)
343 2wwf_A Thymidilate kinase, put 82.3 0.69 2.4E-05 36.1 2.5 20 11-30 9-28 (212)
344 1pzn_A RAD51, DNA repair and r 82.3 0.68 2.3E-05 39.6 2.6 41 12-52 131-174 (349)
345 1q0u_A Bstdead; DEAD protein, 82.1 1.4 4.6E-05 34.7 4.2 72 217-292 72-157 (219)
346 1nn5_A Similar to deoxythymidy 82.1 0.69 2.4E-05 36.2 2.4 21 11-31 8-28 (215)
347 3be4_A Adenylate kinase; malar 82.0 0.74 2.5E-05 36.3 2.5 19 12-30 5-23 (217)
348 2i3b_A HCR-ntpase, human cance 82.0 0.79 2.7E-05 35.3 2.6 18 12-29 1-18 (189)
349 4g1u_C Hemin import ATP-bindin 81.9 1.2 4.1E-05 36.4 3.9 18 11-28 36-53 (266)
350 1q57_A DNA primase/helicase; d 81.9 0.6 2.1E-05 42.2 2.2 51 12-65 242-292 (503)
351 1zu4_A FTSY; GTPase, signal re 81.8 0.64 2.2E-05 39.2 2.2 22 12-33 105-126 (320)
352 3f9v_A Minichromosome maintena 81.8 0.48 1.6E-05 43.8 1.5 15 14-28 329-343 (595)
353 1cke_A CK, MSSA, protein (cyti 81.7 0.74 2.5E-05 36.4 2.5 18 13-30 6-23 (227)
354 4f4c_A Multidrug resistance pr 81.7 2.1 7.2E-05 43.7 6.2 27 11-38 443-469 (1321)
355 3tif_A Uncharacterized ABC tra 81.5 0.54 1.9E-05 37.7 1.6 18 11-28 30-47 (235)
356 1ak2_A Adenylate kinase isoenz 81.5 0.8 2.7E-05 36.5 2.6 20 12-31 16-35 (233)
357 2yvu_A Probable adenylyl-sulfa 81.4 0.68 2.3E-05 35.4 2.1 19 12-30 13-31 (186)
358 2pt5_A Shikimate kinase, SK; a 81.3 0.8 2.7E-05 34.2 2.4 17 14-30 2-18 (168)
359 1qf9_A UMP/CMP kinase, protein 81.1 0.72 2.5E-05 35.3 2.2 17 14-30 8-24 (194)
360 1sxj_A Activator 1 95 kDa subu 81.1 0.73 2.5E-05 41.8 2.5 43 118-162 147-190 (516)
361 2pez_A Bifunctional 3'-phospho 81.1 0.71 2.4E-05 35.0 2.1 19 11-29 4-22 (179)
362 3nh6_A ATP-binding cassette SU 81.1 0.67 2.3E-05 38.8 2.1 18 11-28 79-96 (306)
363 2jaq_A Deoxyguanosine kinase; 81.1 0.79 2.7E-05 35.4 2.4 17 14-30 2-18 (205)
364 3vkg_A Dynein heavy chain, cyt 81.0 1.2 4.1E-05 49.1 4.3 46 6-53 900-947 (3245)
365 1g41_A Heat shock protein HSLU 81.0 0.8 2.7E-05 40.4 2.6 19 12-30 50-68 (444)
366 3b9q_A Chloroplast SRP recepto 80.9 0.72 2.5E-05 38.5 2.2 19 11-29 99-117 (302)
367 1e4v_A Adenylate kinase; trans 80.8 0.78 2.7E-05 36.0 2.3 17 14-30 2-18 (214)
368 3pxg_A Negative regulator of g 80.6 0.86 2.9E-05 40.8 2.7 19 12-30 201-219 (468)
369 2vhj_A Ntpase P4, P4; non- hyd 80.5 0.58 2E-05 39.3 1.5 23 12-34 123-145 (331)
370 3fmo_B ATP-dependent RNA helic 80.4 2.8 9.6E-05 34.9 5.7 114 217-337 162-289 (300)
371 3asz_A Uridine kinase; cytidin 80.4 0.74 2.5E-05 36.0 2.0 19 11-29 5-23 (211)
372 3k1j_A LON protease, ATP-depen 80.3 0.94 3.2E-05 42.0 3.0 21 9-29 57-77 (604)
373 1mv5_A LMRA, multidrug resista 80.3 1.1 3.6E-05 36.2 2.9 18 11-28 27-44 (243)
374 2yjt_D ATP-dependent RNA helic 81.3 0.34 1.2E-05 36.5 0.0 70 45-125 32-104 (170)
375 3a4m_A L-seryl-tRNA(SEC) kinas 80.2 0.77 2.6E-05 37.4 2.1 19 12-30 4-22 (260)
376 3tlx_A Adenylate kinase 2; str 80.1 0.78 2.7E-05 36.9 2.1 19 12-30 29-47 (243)
377 3ice_A Transcription terminati 80.1 0.55 1.9E-05 40.6 1.2 20 10-29 172-191 (422)
378 4akg_A Glutathione S-transfera 79.9 0.76 2.6E-05 50.0 2.4 24 7-30 918-941 (2695)
379 1ukz_A Uridylate kinase; trans 79.7 0.89 3E-05 35.2 2.3 17 13-29 16-32 (203)
380 1m7g_A Adenylylsulfate kinase; 79.7 0.82 2.8E-05 35.8 2.1 19 11-29 24-42 (211)
381 2db3_A ATP-dependent RNA helic 79.6 9.1 0.00031 33.6 9.1 70 45-125 302-374 (434)
382 2cbz_A Multidrug resistance-as 79.6 0.81 2.8E-05 36.7 2.0 18 11-28 30-47 (237)
383 2p5t_B PEZT; postsegregational 79.4 0.66 2.3E-05 37.6 1.5 18 13-30 33-50 (253)
384 2if2_A Dephospho-COA kinase; a 79.4 0.93 3.2E-05 35.1 2.3 16 14-29 3-18 (204)
385 1gku_B Reverse gyrase, TOP-RG; 79.3 3.9 0.00013 40.7 7.1 76 216-293 98-183 (1054)
386 2bbw_A Adenylate kinase 4, AK4 79.3 1 3.5E-05 36.2 2.6 18 12-29 27-44 (246)
387 3fht_A ATP-dependent RNA helic 79.3 7.6 0.00026 33.6 8.4 70 45-125 268-340 (412)
388 1jjv_A Dephospho-COA kinase; P 79.2 0.93 3.2E-05 35.2 2.3 18 14-31 4-21 (206)
389 1f2t_A RAD50 ABC-ATPase; DNA d 79.2 0.78 2.7E-05 33.7 1.7 15 14-28 25-39 (149)
390 2ce7_A Cell division protein F 79.2 0.95 3.2E-05 40.5 2.5 17 13-29 50-66 (476)
391 3nwn_A Kinesin-like protein KI 79.2 0.83 2.8E-05 39.1 2.0 26 5-30 96-123 (359)
392 3tqc_A Pantothenate kinase; bi 79.0 1.5 5.2E-05 36.9 3.5 15 15-29 95-109 (321)
393 2ixe_A Antigen peptide transpo 78.8 1.2 4.2E-05 36.4 2.9 18 11-28 44-61 (271)
394 2pbr_A DTMP kinase, thymidylat 78.8 0.98 3.4E-05 34.6 2.3 17 14-30 2-18 (195)
395 3bfn_A Kinesin-like protein KI 78.8 1.2 4E-05 38.6 2.8 26 5-30 90-117 (388)
396 4e22_A Cytidylate kinase; P-lo 78.7 1.1 3.7E-05 36.3 2.6 18 12-29 27-44 (252)
397 1wp9_A ATP-dependent RNA helic 78.7 4.5 0.00015 35.8 6.9 73 45-128 363-446 (494)
398 1hv8_A Putative ATP-dependent 78.5 13 0.00045 31.3 9.6 71 45-126 240-313 (367)
399 2j0s_A ATP-dependent RNA helic 78.5 8.3 0.00028 33.4 8.4 70 45-125 278-350 (410)
400 2pcj_A ABC transporter, lipopr 78.4 0.75 2.6E-05 36.5 1.4 18 11-28 29-46 (224)
401 2xb4_A Adenylate kinase; ATP-b 78.2 1 3.5E-05 35.6 2.3 17 14-30 2-18 (223)
402 2z0h_A DTMP kinase, thymidylat 78.1 1.1 3.6E-05 34.5 2.3 16 15-30 3-18 (197)
403 1bg2_A Kinesin; motor protein, 78.1 0.98 3.4E-05 38.1 2.1 26 5-30 69-96 (325)
404 3m6a_A ATP-dependent protease 78.0 1.1 3.6E-05 41.1 2.5 18 12-29 108-125 (543)
405 1nij_A Hypothetical protein YJ 77.9 2 6.7E-05 36.2 4.0 16 14-29 6-21 (318)
406 1sgw_A Putative ABC transporte 77.8 1 3.4E-05 35.5 2.0 19 10-28 33-51 (214)
407 2og2_A Putative signal recogni 77.7 1 3.4E-05 38.6 2.2 18 12-29 157-174 (359)
408 2ff7_A Alpha-hemolysin translo 77.7 0.97 3.3E-05 36.5 2.0 18 11-28 34-51 (247)
409 1htw_A HI0065; nucleotide-bind 77.7 0.96 3.3E-05 33.6 1.8 18 11-28 32-49 (158)
410 1s2m_A Putative ATP-dependent 77.7 9.9 0.00034 32.7 8.6 70 45-125 260-332 (400)
411 2f1r_A Molybdopterin-guanine d 77.3 0.64 2.2E-05 35.1 0.7 16 14-29 4-19 (171)
412 2pze_A Cystic fibrosis transme 77.3 1 3.5E-05 35.9 1.9 18 11-28 33-50 (229)
413 2ghi_A Transport protein; mult 77.3 1 3.5E-05 36.7 2.0 18 11-28 45-62 (260)
414 3kta_A Chromosome segregation 77.3 0.9 3.1E-05 34.5 1.6 16 14-29 28-43 (182)
415 1j8m_F SRP54, signal recogniti 77.2 1.2 4E-05 37.1 2.4 22 12-33 98-119 (297)
416 1g6h_A High-affinity branched- 77.2 0.87 3E-05 37.0 1.5 18 11-28 32-49 (257)
417 3gfo_A Cobalt import ATP-bindi 77.0 1 3.5E-05 37.1 1.9 18 11-28 33-50 (275)
418 1goj_A Kinesin, kinesin heavy 77.0 1.1 3.7E-05 38.4 2.1 25 6-30 73-99 (355)
419 1ji0_A ABC transporter; ATP bi 76.9 0.9 3.1E-05 36.5 1.5 18 11-28 31-48 (240)
420 4akg_A Glutathione S-transfera 76.9 0.96 3.3E-05 49.2 2.1 20 10-29 1265-1284(2695)
421 3qf7_A RAD50; ABC-ATPase, ATPa 76.9 0.92 3.1E-05 39.1 1.7 16 14-29 25-40 (365)
422 3tqf_A HPR(Ser) kinase; transf 76.8 1.1 3.8E-05 33.8 1.9 23 11-33 15-37 (181)
423 2v3c_C SRP54, signal recogniti 76.8 0.87 3E-05 40.2 1.5 35 13-50 100-134 (432)
424 3lre_A Kinesin-like protein KI 76.7 1.1 3.8E-05 38.3 2.1 25 5-29 97-123 (355)
425 1b0u_A Histidine permease; ABC 76.7 0.94 3.2E-05 37.0 1.6 18 11-28 31-48 (262)
426 1t5c_A CENP-E protein, centrom 76.4 1.1 3.8E-05 38.2 2.0 26 5-30 69-96 (349)
427 2vvg_A Kinesin-2; motor protei 76.3 1.2 4E-05 38.0 2.1 24 6-29 82-107 (350)
428 3dc4_A Kinesin-like protein NO 76.3 1.1 3.8E-05 38.1 2.0 25 5-29 86-112 (344)
429 3b6u_A Kinesin-like protein KI 76.3 1.1 3.9E-05 38.5 2.0 24 6-29 94-119 (372)
430 3gbj_A KIF13B protein; kinesin 76.3 1.1 3.9E-05 38.2 2.0 26 5-30 84-111 (354)
431 3cob_A Kinesin heavy chain-lik 76.2 1.2 4.1E-05 38.3 2.2 26 5-30 71-98 (369)
432 3pxi_A Negative regulator of g 76.2 1.3 4.6E-05 42.3 2.7 19 12-30 201-219 (758)
433 1f9v_A Kinesin-like protein KA 76.1 1.5 5.1E-05 37.4 2.7 26 5-30 76-103 (347)
434 1uf9_A TT1252 protein; P-loop, 76.1 1.3 4.3E-05 34.3 2.2 18 14-31 10-27 (203)
435 2nr8_A Kinesin-like protein KI 76.0 1.2 4E-05 38.2 2.0 25 5-29 95-121 (358)
436 1svm_A Large T antigen; AAA+ f 76.0 1.3 4.5E-05 38.2 2.4 19 11-29 168-186 (377)
437 1v8k_A Kinesin-like protein KI 75.9 1.2 4.3E-05 38.7 2.2 26 5-30 146-173 (410)
438 1x88_A Kinesin-like protein KI 75.7 1.2 4E-05 38.2 2.0 26 5-30 80-107 (359)
439 2y65_A Kinesin, kinesin heavy 75.7 1.2 4.2E-05 38.1 2.1 25 5-29 76-102 (365)
440 4etp_A Kinesin-like protein KA 75.7 1.5 5.2E-05 38.2 2.7 26 5-30 132-159 (403)
441 2zfi_A Kinesin-like protein KI 75.7 1.2 4.2E-05 38.2 2.1 24 6-29 82-107 (366)
442 3t0q_A AGR253WP; kinesin, alph 75.6 1.5 5.2E-05 37.3 2.7 26 5-30 77-104 (349)
443 2yz2_A Putative ABC transporte 75.6 1 3.6E-05 36.8 1.6 18 11-28 32-49 (266)
444 2nq2_C Hypothetical ABC transp 75.5 1 3.4E-05 36.6 1.5 18 11-28 30-47 (253)
445 1yks_A Genome polyprotein [con 75.5 3.8 0.00013 36.3 5.3 67 45-124 179-245 (440)
446 2h58_A Kinesin-like protein KI 75.4 1.5 5.1E-05 37.1 2.5 26 5-30 72-99 (330)
447 2zu0_C Probable ATP-dependent 75.3 1.3 4.5E-05 36.2 2.2 19 10-28 44-62 (267)
448 1xjc_A MOBB protein homolog; s 75.3 1.5 5.1E-05 33.0 2.2 16 14-29 6-21 (169)
449 4a14_A Kinesin, kinesin-like p 75.2 1.3 4.6E-05 37.6 2.2 25 5-29 75-101 (344)
450 1tf5_A Preprotein translocase 75.2 8.4 0.00029 36.9 7.7 73 213-291 120-209 (844)
451 2d2e_A SUFC protein; ABC-ATPas 75.1 1.3 4.5E-05 35.7 2.1 18 11-28 28-45 (250)
452 2grj_A Dephospho-COA kinase; T 75.0 1.5 5.1E-05 33.8 2.3 17 15-31 15-31 (192)
453 4f4c_A Multidrug resistance pr 75.0 2.2 7.5E-05 43.6 4.0 28 10-38 1103-1130(1321)
454 1rz3_A Hypothetical protein rb 74.9 1.3 4.5E-05 34.3 2.0 17 13-29 23-39 (201)
455 1vht_A Dephospho-COA kinase; s 74.9 1.3 4.5E-05 34.7 2.0 19 13-31 5-23 (218)
456 1tf7_A KAIC; homohexamer, hexa 74.7 1.6 5.5E-05 39.7 2.8 49 11-63 280-328 (525)
457 2qi9_C Vitamin B12 import ATP- 74.5 1.3 4.6E-05 35.7 1.9 19 10-28 24-42 (249)
458 1vpl_A ABC transporter, ATP-bi 74.4 1.4 4.7E-05 35.8 2.0 18 11-28 40-57 (256)
459 2wbe_C Bipolar kinesin KRP-130 74.2 1.3 4.5E-05 38.1 1.9 25 6-30 93-119 (373)
460 2dhr_A FTSH; AAA+ protein, hex 74.1 1.5 5E-05 39.5 2.3 17 13-29 65-81 (499)
461 3u06_A Protein claret segregat 74.0 1.6 5.6E-05 38.0 2.5 25 5-29 130-156 (412)
462 2ihy_A ABC transporter, ATP-bi 73.8 1.4 4.8E-05 36.3 1.9 18 11-28 46-63 (279)
463 2jeo_A Uridine-cytidine kinase 73.8 1.4 4.8E-05 35.4 2.0 18 12-29 25-42 (245)
464 2yhs_A FTSY, cell division pro 73.8 1.3 4.4E-05 39.7 1.8 18 12-29 293-310 (503)
465 2olj_A Amino acid ABC transpor 73.8 1.4 4.9E-05 35.8 2.0 18 11-28 49-66 (263)
466 3auy_A DNA double-strand break 73.8 1.2 4.1E-05 38.5 1.6 15 14-28 27-41 (371)
467 1ypw_A Transitional endoplasmi 73.6 1.3 4.3E-05 42.8 1.8 18 12-29 238-255 (806)
468 3bs4_A Uncharacterized protein 73.6 1.6 5.5E-05 35.5 2.2 51 12-66 21-71 (260)
469 2heh_A KIF2C protein; kinesin, 73.4 1.5 5.3E-05 37.8 2.2 26 5-30 126-153 (387)
470 4eaq_A DTMP kinase, thymidylat 73.0 1.6 5.5E-05 34.7 2.1 19 11-29 25-43 (229)
471 1np6_A Molybdopterin-guanine d 73.0 1.8 6.2E-05 32.7 2.3 17 13-29 7-23 (174)
472 1odf_A YGR205W, hypothetical 3 72.9 1.7 5.8E-05 36.0 2.2 16 14-29 33-48 (290)
473 1ltq_A Polynucleotide kinase; 72.9 1.7 5.7E-05 36.1 2.2 18 14-31 4-21 (301)
474 3cf2_A TER ATPase, transitiona 72.9 1.8 6.2E-05 41.4 2.7 25 12-37 511-535 (806)
475 2rep_A Kinesin-like protein KI 72.8 1.9 6.4E-05 37.2 2.5 26 5-30 107-134 (376)
476 2v6i_A RNA helicase; membrane, 72.7 5.8 0.0002 34.9 5.8 53 45-103 173-225 (431)
477 1nkt_A Preprotein translocase 72.7 11 0.00037 36.4 7.7 59 211-275 146-208 (922)
478 2owm_A Nckin3-434, related to 72.6 1.6 5.5E-05 38.5 2.1 25 6-30 129-155 (443)
479 3cmu_A Protein RECA, recombina 72.4 1.9 6.4E-05 45.6 2.8 46 11-60 1080-1125(2050)
480 1gtv_A TMK, thymidylate kinase 72.3 0.89 3.1E-05 35.5 0.4 16 14-29 2-17 (214)
481 3b5x_A Lipid A export ATP-bind 72.2 2.8 9.7E-05 38.6 3.8 18 11-28 368-385 (582)
482 3cmw_A Protein RECA, recombina 72.0 1.6 5.5E-05 45.3 2.2 40 12-54 34-73 (1706)
483 1q3t_A Cytidylate kinase; nucl 71.8 2.1 7.2E-05 34.1 2.5 20 11-30 15-34 (236)
484 2bbs_A Cystic fibrosis transme 71.7 1.7 5.7E-05 36.1 1.9 18 11-28 63-80 (290)
485 3r20_A Cytidylate kinase; stru 71.7 2.2 7.5E-05 34.0 2.6 19 12-30 9-27 (233)
486 3aez_A Pantothenate kinase; tr 71.6 1.8 6.1E-05 36.3 2.1 19 11-29 89-107 (312)
487 1uj2_A Uridine-cytidine kinase 71.6 1.9 6.5E-05 34.8 2.3 17 14-30 24-40 (252)
488 3qks_A DNA double-strand break 71.4 1.6 5.5E-05 34.0 1.7 16 14-29 25-40 (203)
489 2fsf_A Preprotein translocase 71.3 9.9 0.00034 36.4 7.1 57 213-275 111-171 (853)
490 2f6r_A COA synthase, bifunctio 71.3 1.9 6.4E-05 35.6 2.2 20 14-33 77-96 (281)
491 3p32_A Probable GTPase RV1496/ 70.6 40 0.0014 28.6 10.5 18 14-31 81-98 (355)
492 3qf4_B Uncharacterized ABC tra 70.5 2.7 9.4E-05 38.9 3.3 18 11-28 380-397 (598)
493 3fvq_A Fe(3+) IONS import ATP- 70.3 2 6.7E-05 36.8 2.1 18 11-28 29-46 (359)
494 1a7j_A Phosphoribulokinase; tr 70.3 1.7 5.7E-05 36.1 1.6 16 14-29 7-22 (290)
495 2oca_A DAR protein, ATP-depend 70.2 32 0.0011 30.7 10.4 75 45-129 349-426 (510)
496 1r6b_X CLPA protein; AAA+, N-t 70.2 2.1 7.3E-05 40.9 2.6 18 12-29 207-224 (758)
497 1ry6_A Internal kinesin; kines 69.8 2 7E-05 36.7 2.1 20 11-30 82-103 (360)
498 3gk5_A Uncharacterized rhodane 69.6 4 0.00014 27.8 3.3 35 216-250 54-88 (108)
499 2yl4_A ATP-binding cassette SU 69.5 2.9 0.0001 38.6 3.2 18 11-28 369-386 (595)
500 3pxi_A Negative regulator of g 69.2 2.1 7.1E-05 41.0 2.3 16 14-29 523-538 (758)
No 1
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.2e-57 Score=404.12 Aligned_cols=355 Identities=74% Similarity=1.194 Sum_probs=322.8
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.++++++....+++++..+.|
T Consensus 34 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g 113 (391)
T 1xti_A 34 VQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG 113 (391)
T ss_dssp HHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECT
T ss_pred HHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeC
Confidence 48999999999999999999999999999999988876665555899999999999999999999988777899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.........+..+.++|+|+||+.+...+.+....+.++++||+||||++..+.++...+..+....+...+++++|||
T Consensus 114 ~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 193 (391)
T 1xti_A 114 GLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 193 (391)
T ss_dssp TSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESS
T ss_pred CCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEee
Confidence 98887777777766679999999999999888888889999999999999987667778888888888888999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~ 240 (356)
++.........++.+|..+................+.......+...+..++.....+++||||++++.+..+++.|...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~ 273 (391)
T 1xti_A 194 LSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ 273 (391)
T ss_dssp CCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC
Confidence 99998889999999998887766665566667777777788888888888888888899999999999999999999999
Q ss_pred CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 241 NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
+..+..+||++++.+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|+|...|.||+||+||.|++|.++++
T Consensus 274 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 353 (391)
T 1xti_A 274 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 353 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEE
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCChHHHHHHHHHhcccCcccCcccccCCCCC
Q 018420 321 VSSASDSDILNQVQARFEVDIKELPEQIDTSTYMP 355 (356)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (356)
+.+.++..+++.+++.++..+.++|.+++...|++
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (391)
T 1xti_A 354 VSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 388 (391)
T ss_dssp ECSHHHHHHHHHHHHHTTCCCEECCSCCCGGGTSC
T ss_pred EcccchHHHHHHHHHHhcCChhhCCccccHHHHhh
Confidence 99877888899999999999999999998887775
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=7.8e-56 Score=398.38 Aligned_cols=345 Identities=30% Similarity=0.529 Sum_probs=303.1
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-----CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
+|+++++.+++++++++++|||||||++|+++++..+... ...++++|++|+++|+.|+.++++++.... ++++
T Consensus 82 iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~ 160 (434)
T 2db3_A 82 IQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFES-YLKI 160 (434)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTS-SCCC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccC-CcEE
Confidence 4899999999999999999999999999999888765322 234589999999999999999999987665 7888
Q ss_pred EEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhC--CCCCc
Q 018420 76 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT--PHDKQ 153 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~--~~~~~ 153 (356)
..+.|+.....+...+..+ ++|+|+||+.+..++.+....+.+++++|+||||++.+ .++...+..+.... .+..|
T Consensus 161 ~~~~gg~~~~~~~~~l~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~-~gf~~~~~~i~~~~~~~~~~q 238 (434)
T 2db3_A 161 GIVYGGTSFRHQNECITRG-CHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLD-MGFSEDMRRIMTHVTMRPEHQ 238 (434)
T ss_dssp CEECTTSCHHHHHHHHTTC-CSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTS-TTTHHHHHHHHHCTTSCSSCE
T ss_pred EEEECCCCHHHHHHHhhcC-CCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhc-cCcHHHHHHHHHhcCCCCCce
Confidence 9999998877766666554 69999999999999988888889999999999999987 67888888888764 56789
Q ss_pred EEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHH
Q 018420 154 VMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 233 (356)
Q Consensus 154 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~ 233 (356)
++++|||++..+..+...++.++..+...... .....+.+.+.......+...+..++.....+ +||||++++.+..+
T Consensus 239 ~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l 316 (434)
T 2db3_A 239 TLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKRSKLIEILSEQADG-TIVFVETKRGADFL 316 (434)
T ss_dssp EEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHH
T ss_pred EEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHH
Confidence 99999999999999999999888777665433 23345566677777777888888888776544 99999999999999
Q ss_pred HHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCC
Q 018420 234 NKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT 313 (356)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 313 (356)
++.|.+.+..+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+
T Consensus 317 ~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~ 396 (434)
T 2db3_A 317 ASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGN 396 (434)
T ss_dssp HHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTC
T ss_pred HHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEccCCChHHHHHHHHHhcccCcccCccccc
Q 018420 314 KGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 350 (356)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (356)
.|.+++++++.++....+.+.+.+....+++|+.+..
T Consensus 397 ~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 397 NGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp CEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred CCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 9999999998888888999999999999999987653
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.2e-54 Score=386.22 Aligned_cols=344 Identities=36% Similarity=0.644 Sum_probs=301.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|+++++.+++++++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.++++++.... ++.+..+.|
T Consensus 63 ~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g 141 (410)
T 2j0s_A 63 IQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIG 141 (410)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECT
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEEC
Confidence 4899999999999999999999999999999999887655555589999999999999999999987665 788999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.....+...+..+ .+|+|+||+.+...+.+....+..+++||+||+|++.+ .++...+..+....++..+++++|||
T Consensus 142 ~~~~~~~~~~~~~~-~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT 219 (410)
T 2j0s_A 142 GTNVGEDIRKLDYG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN-KGFKEQIYDVYRYLPPATQVVLISAT 219 (410)
T ss_dssp TSCHHHHHHHHHHC-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS-TTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred CCCHHHHHHHhhcC-CCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh-hhhHHHHHHHHHhCccCceEEEEEcC
Confidence 88877776666554 59999999999999988888888999999999999887 67788888888888888999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcCh-hHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
++.........++.+|..+...... .....+.+.+..... ..+...+..++.....+++||||++++.++.+++.|.+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~ 298 (410)
T 2j0s_A 220 LPHEILEMTNKFMTDPIRILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE 298 (410)
T ss_dssp CCHHHHTTGGGTCSSCEEECCCGGG-CSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEecCcc-ccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHh
Confidence 9988777888888888766544332 333444555555444 34677788888777778999999999999999999999
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEE
Q 018420 240 CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 319 (356)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~ 319 (356)
.+..+..+||++++.+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|.+...|.||+||+||.|+.|.+++
T Consensus 299 ~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~ 378 (410)
T 2j0s_A 299 ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAIN 378 (410)
T ss_dssp TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCChHHHHHHHHHhcccCcccCcccc
Q 018420 320 FVSSASDSDILNQVQARFEVDIKELPEQID 349 (356)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (356)
++.+ .+...++.+++.+...++++|.++.
T Consensus 379 ~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (410)
T 2j0s_A 379 FVKN-DDIRILRDIEQYYSTQIDEMPMNVA 407 (410)
T ss_dssp EEEG-GGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred EecH-HHHHHHHHHHHHhCCCceecccchh
Confidence 9984 6778889999999999999987654
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.2e-53 Score=382.07 Aligned_cols=348 Identities=39% Similarity=0.640 Sum_probs=303.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.+.++++.... ++.+..+.|
T Consensus 47 ~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g 125 (400)
T 1s2m_A 47 IQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTG 125 (400)
T ss_dssp HHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECS
T ss_pred HHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeC
Confidence 4899999999999999999999999999999998877665555589999999999999999999987765 788888888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.....+...... .++|+|+||+.+...+.+....+.++++||+||+|++.. .++...+..+....++..+++++|||
T Consensus 126 ~~~~~~~~~~~~~-~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~-~~~~~~~~~i~~~~~~~~~~i~lSAT 203 (400)
T 1s2m_A 126 GTNLRDDILRLNE-TVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLS-RDFKTIIEQILSFLPPTHQSLLFSAT 203 (400)
T ss_dssp SSCHHHHHHHTTS-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS-HHHHHHHHHHHTTSCSSCEEEEEESC
T ss_pred CcchHHHHHHhcC-CCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhh-hchHHHHHHHHHhCCcCceEEEEEec
Confidence 8776655444433 469999999999998888777789999999999999876 56777788888888888999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~ 240 (356)
++......+...+..|..+..... .........+.......+...+..++.....+++||||++++.++.+++.|.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~ 281 (400)
T 1s2m_A 204 FPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL 281 (400)
T ss_dssp CCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc
Confidence 999888888888888765544322 334455566666677777788888888888889999999999999999999999
Q ss_pred CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 241 NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
+..+..+||++++.+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|.+...|.||+||+||.|++|.++++
T Consensus 282 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l 361 (400)
T 1s2m_A 282 GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINL 361 (400)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEE
T ss_pred CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCChHHHHHHHHHhcccCcccCcccccCCCC
Q 018420 321 VSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 354 (356)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (356)
+++ .+...++.+++.+...++++|..+....|+
T Consensus 362 ~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 394 (400)
T 1s2m_A 362 INW-NDRFNLYKIEQELGTEIAAIPATIDKSLYV 394 (400)
T ss_dssp ECG-GGHHHHHHHHHHHTCCCEECCSSCCGGGTC
T ss_pred ecc-chHHHHHHHHHHhCCCccccccccccccee
Confidence 985 566778899999999999999888766554
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.6e-54 Score=387.29 Aligned_cols=346 Identities=38% Similarity=0.655 Sum_probs=287.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+++++++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.+.++++.... +..+....|
T Consensus 66 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~ 144 (414)
T 3eiq_A 66 IQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIG 144 (414)
T ss_dssp HHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCC
T ss_pred HHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhccc-CceEEEEEC
Confidence 4899999999999999999999999999999999887766555589999999999999999999987765 788888888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.........+....++|+|+||+.+...+......+..+++||+||||++.+ .++...+..+....+...+++++|||
T Consensus 145 ~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT 223 (414)
T 3eiq_A 145 GTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS-RGFKDQIYDIFQKLNSNTQVVLLSAT 223 (414)
T ss_dssp CTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHH-TTTHHHHHHHHTTSCTTCEEEEECSC
T ss_pred CcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhc-cCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 88877777777766689999999999999988888888899999999999876 57788888999888889999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcCh-hHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
++.........++.++..+...... .....+...+..... ..+...+..++.....+++||||++++.++.+++.|..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 302 (414)
T 3eiq_A 224 MPSDVLEVTKKFMRDPIRILVKKEE-LTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA 302 (414)
T ss_dssp CCHHHHHHHTTTCSSCEEECCCCCC-CCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHcCCCEEEEecCCc-cCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHh
Confidence 9998888888888888776554433 333444555554443 44778888888888888999999999999999999999
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEE
Q 018420 240 CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 319 (356)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~ 319 (356)
.+..+..+||++++.+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|.+..+|.||+||+||.|++|.+++
T Consensus 303 ~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~ 382 (414)
T 3eiq_A 303 RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAIN 382 (414)
T ss_dssp TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEE
T ss_pred cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCChHHHHHHHHHhcccCcccCccccc
Q 018420 320 FVSSASDSDILNQVQARFEVDIKELPEQIDT 350 (356)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (356)
++.+ .+...++.+++.++..++++|..+.+
T Consensus 383 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 383 MVTE-EDKRTLRDIETFYNTSIEEMPLNVAD 412 (414)
T ss_dssp EECS-THHHHHHHHHHHTTCCCEECCC----
T ss_pred EEcH-HHHHHHHHHHHHHcCCccccChhhhh
Confidence 9984 67778899999999999999877654
No 6
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=7.6e-53 Score=378.47 Aligned_cols=342 Identities=34% Similarity=0.560 Sum_probs=293.2
Q ss_pred CccccHhhHhcC--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|.++++.+.++ +++++.+|||+|||++++++++..+......++++|++|+++|+.|+.+.++++....++..+...
T Consensus 51 ~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 130 (412)
T 3fht_A 51 IQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYA 130 (412)
T ss_dssp HHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEE
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEe
Confidence 489999999987 899999999999999999999988877666668999999999999999999999887778888888
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc-CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
.++....... ....+|+|+||+.+...+.+ ....+.++++||+||||++....++...+..+....+...+++++
T Consensus 131 ~~~~~~~~~~----~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 206 (412)
T 3fht_A 131 VRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLF 206 (412)
T ss_dssp CTTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEE
T ss_pred ecCcchhhhh----cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEE
Confidence 8876644322 23468999999999998855 556678999999999999977567778888888888889999999
Q ss_pred EecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcC-hhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHH
Q 018420 158 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS-ELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKL 236 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~ 236 (356)
|||++.........++.++..+....... ........+.... ...+...+..++.....+++||||++++.+..+++.
T Consensus 207 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~ 285 (412)
T 3fht_A 207 SATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAE 285 (412)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEECCCGGGS-SCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHH
T ss_pred EeecCHHHHHHHHHhcCCCeEEeeccccc-cccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHH
Confidence 99999988888889888887766554433 3344445554443 455677777888877888999999999999999999
Q ss_pred HHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCC------CChhhhhhccccccC
Q 018420 237 LVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGR 310 (356)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R 310 (356)
|...+..+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.| .+..+|+||+||+||
T Consensus 286 L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR 365 (412)
T 3fht_A 286 LSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGR 365 (412)
T ss_dssp HHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSC
T ss_pred HHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999 467899999999999
Q ss_pred CCCcceEEEEEccCCChHHHHHHHHHhcccCcccCcc
Q 018420 311 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 347 (356)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (356)
.|+.|.+++++++.++...++.+++.+...+++++.+
T Consensus 366 ~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 366 FGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp TTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC---
T ss_pred CCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCc
Confidence 9999999999997777888999999999998888743
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.4e-53 Score=379.05 Aligned_cols=344 Identities=32% Similarity=0.516 Sum_probs=289.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC------------------CCCeeEEEEcCchHHHHHHHHH
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN------------------PGQVTALVLCHTRELAYQICHE 62 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~------------------~~~~~vlii~P~~~l~~q~~~~ 62 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+... ...++++|++|+++|+.|+.++
T Consensus 41 ~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 120 (417)
T 2i4i_A 41 VQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEE 120 (417)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHH
Confidence 4899999999999999999999999999998888654321 1224799999999999999999
Q ss_pred HHHHhccCCCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHH
Q 018420 63 FERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQ 142 (356)
Q Consensus 63 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~ 142 (356)
++++.... ++.+..+.|+.........+..+ ++|+|+||+.+...+......+..+++||+||+|++.. .++...+.
T Consensus 121 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~-~~~~~~~~ 197 (417)
T 2i4i_A 121 ARKFSYRS-RVRPCVVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD-MGFEPQIR 197 (417)
T ss_dssp HHHHHTTS-SCCEEEECSSSCHHHHHHHHTTC-CSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH-TTCHHHHH
T ss_pred HHHHhCcC-CceEEEEECCCCHHHHHHHhhCC-CCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc-cCcHHHHH
Confidence 99987665 78899999998877766666554 69999999999999988888889999999999999887 56788888
Q ss_pred HHHhhC--CC--CCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc-CC
Q 018420 143 EIFKMT--PH--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL-DF 217 (356)
Q Consensus 143 ~~~~~~--~~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 217 (356)
.+.... +. ..+++++|||++.........++.++..+...... .....+...+.......+...+..+++.. .+
T Consensus 198 ~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~ 276 (417)
T 2i4i_A 198 RIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDKRSFLLDLLNATGKD 276 (417)
T ss_dssp HHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTT
T ss_pred HHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccHhHHHHHHHHHHhcCCC
Confidence 887642 22 57899999999998888888888888766554332 23344556667777777788888888776 56
Q ss_pred CeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCC
Q 018420 218 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDS 297 (356)
Q Consensus 218 ~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s 297 (356)
+++||||++++.++.+++.|.+.+..+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.+
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s 356 (417)
T 2i4i_A 277 SLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSD 356 (417)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSS
T ss_pred CeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcccCcccc
Q 018420 298 ADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 349 (356)
Q Consensus 298 ~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (356)
...|.||+||+||.|+.|.+++++.+ .+....+.+.+.+.....++|..+.
T Consensus 357 ~~~~~Qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~ 407 (417)
T 2i4i_A 357 IEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPSWLE 407 (417)
T ss_dssp HHHHHHHHTTBCC--CCEEEEEEECG-GGGGGHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHhcCccccCCCCceEEEEEcc-ccHHHHHHHHHHHHHhcCcCCHHHH
Confidence 99999999999999999999999985 5666677788777777777775543
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=4.8e-52 Score=371.18 Aligned_cols=338 Identities=30% Similarity=0.553 Sum_probs=288.9
Q ss_pred CccccHhhHhcC--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|.++++.+.++ +++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.+.++++.... ++.+...
T Consensus 31 ~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~ 109 (395)
T 3pey_A 31 IQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFT-KITSQLI 109 (395)
T ss_dssp HHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEE
Confidence 489999999987 8999999999999999999998887765555689999999999999999999987654 6777777
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
.++...... ...++|+|+||+.+...+.+....+.++++||+||||++....++...+..+....+...+++++|
T Consensus 110 ~~~~~~~~~-----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 184 (395)
T 3pey_A 110 VPDSFEKNK-----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFS 184 (395)
T ss_dssp STTSSCTTS-----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEE
T ss_pred ecCchhhhc-----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEE
Confidence 765432221 223699999999999999888888899999999999999876677788888888888889999999
Q ss_pred ecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEc-ChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHH
Q 018420 159 ATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL 237 (356)
Q Consensus 159 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l 237 (356)
||+++........++.++..+...... .........+... ....+...+..++.....+++||||++++.++.+++.|
T Consensus 185 AT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 263 (395)
T 3pey_A 185 ATFADAVRQYAKKIVPNANTLELQTNE-VNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKL 263 (395)
T ss_dssp SCCCHHHHHHHHHHSCSCEEECCCGGG-CSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHhCCCCeEEEccccc-cccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHH
Confidence 999998888888888887766554433 2333444445444 44556777778888778899999999999999999999
Q ss_pred HhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC------ChhhhhhccccccCC
Q 018420 238 VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------SADTYLHRVGRAGRF 311 (356)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~------s~~~~~Q~~GR~~R~ 311 (356)
++.+..+..+||++++.+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|. |..+|.||+||+||.
T Consensus 264 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~ 343 (395)
T 3pey_A 264 KSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 343 (395)
T ss_dssp HHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCT
T ss_pred HhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred CCcceEEEEEccCCChHHHHHHHHHhc-ccCcccC
Q 018420 312 GTKGLAITFVSSASDSDILNQVQARFE-VDIKELP 345 (356)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 345 (356)
|+.|.+++++...++....+.+++.+. ..+..++
T Consensus 344 g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 344 GRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp TCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred CCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 999999999998778888888888877 6666655
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.3e-51 Score=362.23 Aligned_cols=333 Identities=37% Similarity=0.595 Sum_probs=287.8
Q ss_pred CccccHhhHhcC-CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQAILG-MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+|.++++.+.++ +++++.+|||+|||++++.+++..+...++. ++++++|+++|+.|+.++++++.... ++.+....
T Consensus 32 ~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~ 109 (367)
T 1hv8_A 32 IQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGI-EAIILTPTRELAIQVADEIESLKGNK-NLKIAKIY 109 (367)
T ss_dssp HHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSC-CEEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEEC
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCC-cEEEEcCCHHHHHHHHHHHHHHhCCC-CceEEEEE
Confidence 489999999988 6999999999999999988888776654333 79999999999999999999988764 77888999
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
|+.........+.. .+|+|+||+.+...+......+.++++||+||+|++.. .++...+..+....+...+++++||
T Consensus 110 ~~~~~~~~~~~~~~--~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SA 186 (367)
T 1hv8_A 110 GGKAIYPQIKALKN--ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN-MGFIKDVEKILNACNKDKRILLFSA 186 (367)
T ss_dssp TTSCHHHHHHHHHT--CSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT-TTTHHHHHHHHHTSCSSCEEEEECS
T ss_pred CCcchHHHHhhcCC--CCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh-hchHHHHHHHHHhCCCCceEEEEee
Confidence 98877666555553 59999999999999888877889999999999999977 5677888888888888899999999
Q ss_pred cCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
|++.........++.++..+..... ..+...+.......+...+..++. ..+.++||||++++.++.+++.|.+
T Consensus 187 T~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~ 260 (367)
T 1hv8_A 187 TMPREILNLAKKYMGDYSFIKAKIN-----ANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRD 260 (367)
T ss_dssp SCCHHHHHHHHHHCCSEEEEECCSS-----SSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCCeEEEecCC-----CCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHh
Confidence 9999888888888777655443222 244555666667777777777776 4557899999999999999999999
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEE
Q 018420 240 CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 319 (356)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~ 319 (356)
.+..+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|.|..+|.||+||+||.|++|.+++
T Consensus 261 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~ 340 (367)
T 1hv8_A 261 IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAIS 340 (367)
T ss_dssp TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEE
T ss_pred cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCChHHHHHHHHHhcccCcccC
Q 018420 320 FVSSASDSDILNQVQARFEVDIKELP 345 (356)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (356)
++++ .+...++.+++.++.++++++
T Consensus 341 ~~~~-~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 341 IINR-REYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp EECT-TSHHHHHHHHHHHTCCCCCBC
T ss_pred EEcH-HHHHHHHHHHHHhCCCCceec
Confidence 9984 677888999999888887764
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.6e-53 Score=378.34 Aligned_cols=343 Identities=38% Similarity=0.648 Sum_probs=155.2
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+......++++|++|+++|+.|+.+.++++.... ++.+..+.|
T Consensus 47 ~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g 125 (394)
T 1fuu_A 47 IQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIG 125 (394)
T ss_dssp HHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECS
T ss_pred HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeC
Confidence 4899999999999999999999999999999988877666555689999999999999999999887665 788999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.........+.. .+|+|+||+.+...+.+....+.++++||+||+|++.. .++...+..+....++..+++++|||
T Consensus 126 ~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~-~~~~~~~~~~~~~~~~~~~~i~~SAT 202 (394)
T 1fuu_A 126 GTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS-SGFKEQIYQIFTLLPPTTQVVLLSAT 202 (394)
T ss_dssp SCCHHHHHHHHHH--CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH-TTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred CCchHHHHhhcCC--CCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhC-CCcHHHHHHHHHhCCCCceEEEEEEe
Confidence 8887666555543 58999999999998888877788999999999999876 57788888888888888999999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChh-HHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL-EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
+++........++..|..+....... ....+...+...... .+...+..++.....+++||||++++.++.+++.|.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~ 281 (394)
T 1fuu_A 203 MPNDVLEVTTKFMRNPVRILVKKDEL-TLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN 281 (394)
T ss_dssp CCHHHHHHHHHHCCSCEEEEECC---------------------------------------------------------
T ss_pred cCHHHHHHHHHhcCCCeEEEecCccc-cCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHH
Confidence 99988888888888887776544322 222233333333322 2455566666666778999999999999999999999
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEE
Q 018420 240 CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT 319 (356)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~ 319 (356)
.+..+..+||++++.+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|.+...|.||+||+||.|++|.+++
T Consensus 282 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~ 361 (394)
T 1fuu_A 282 DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN 361 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCChHHHHHHHHHhcccCcccCcccc
Q 018420 320 FVSSASDSDILNQVQARFEVDIKELPEQID 349 (356)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (356)
++.+ ++...++.+++.+...++++|.++.
T Consensus 362 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 362 FVTN-EDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp ------------------------------
T ss_pred EEch-hHHHHHHHHHHHhCCcccccCcchh
Confidence 9985 5667788888988999888887653
No 11
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-51 Score=377.28 Aligned_cols=339 Identities=32% Similarity=0.559 Sum_probs=257.9
Q ss_pred CccccHhhHhcC--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|.+|++.+.++ +++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.++++++.... +..+...
T Consensus 145 ~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~ 223 (508)
T 3fho_A 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYT-EVKTAFG 223 (508)
T ss_dssp TTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTS-SCCEEC-
T ss_pred HHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCcc-CeeEEEE
Confidence 599999999998 9999999999999999999999888776656689999999999999999999987654 4454444
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
.++..... ....++|+|+||+.+...+.+....+..+++||+||+|++....++...+..+....+...+++++|
T Consensus 224 ~~~~~~~~-----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lS 298 (508)
T 3fho_A 224 IKDSVPKG-----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFS 298 (508)
T ss_dssp --------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEE
T ss_pred eCCccccc-----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEe
Confidence 44322211 1224699999999999988888888899999999999999876678888888888888899999999
Q ss_pred ecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEc-ChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHH
Q 018420 159 ATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL-SELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL 237 (356)
Q Consensus 159 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l 237 (356)
||+++........+..++..+....... ........+... ....+...+..++.....+++||||++++.+..+++.|
T Consensus 299 AT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 299 ATFSERVEKYAERFAPNANEIRLKTEEL-SVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp SCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCCeEEEeccccC-CcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 9999888888888888887665443332 223333444333 34556677777777778899999999999999999999
Q ss_pred HhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCC------CChhhhhhccccccCC
Q 018420 238 VECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRF 311 (356)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~ 311 (356)
.+.+..+..+||++++.+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.| .|...|.||+||+||.
T Consensus 378 ~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~ 457 (508)
T 3fho_A 378 TADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRF 457 (508)
T ss_dssp TTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC--
T ss_pred HhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999 7899999999999999
Q ss_pred CCcceEEEEEccCCChHHHHHHHHHhcccCcccCc
Q 018420 312 GTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 346 (356)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (356)
|++|.+++++.+..+...++.+++.+...++.++.
T Consensus 458 g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 458 GRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp ---CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 99999999999888888899999999998888874
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.3e-52 Score=383.30 Aligned_cols=341 Identities=34% Similarity=0.558 Sum_probs=151.4
Q ss_pred CccccHhhHhcC--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|.++++.++++ +++++.+|||||||++|+++++..+......++++|++|+++|+.|+.+.++++....+++.+...
T Consensus 118 ~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~ 197 (479)
T 3fmp_B 118 IQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYA 197 (479)
T ss_dssp HHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEE
T ss_pred HHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 489999999986 899999999999999999999999887776668999999999999999999998887777888888
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc-CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
.++....... ....+|+|+||+.+..++.+ ..+.+.++++||+||+|++....++...+..+....+..++++++
T Consensus 198 ~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 273 (479)
T 3fmp_B 198 VRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (479)
T ss_dssp STTCCCCTTC----CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEE
T ss_pred eCCccccccc----cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEE
Confidence 8766543222 22358999999999998865 456678999999999999976557777788888888889999999
Q ss_pred EecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcCh-hHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHH
Q 018420 158 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSE-LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKL 236 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~ 236 (356)
|||++.....+...++.+|..+....... ......+.+..... ..+...+..++.....+++||||++.+.+..++..
T Consensus 274 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~ 352 (479)
T 3fmp_B 274 SATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAE 352 (479)
T ss_dssp ESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------------------
T ss_pred eCCCCHHHHHHHHHHcCCCeEEecccccc-CcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHH
Confidence 99999988888888888887776654432 22333333333322 34555666666666678999999999999999999
Q ss_pred HHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC------ChhhhhhccccccC
Q 018420 237 LVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD------SADTYLHRVGRAGR 310 (356)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~------s~~~~~Q~~GR~~R 310 (356)
|...+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|+||+||+||
T Consensus 353 L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR 432 (479)
T 3fmp_B 353 LSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGR 432 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999994 66899999999999
Q ss_pred CCCcceEEEEEccCCChHHHHHHHHHhcccCcccCc
Q 018420 311 FGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 346 (356)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (356)
.|+.|.+++++++.++..+++.+++.+...++.++.
T Consensus 433 ~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 433 FGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp ------------------------------------
T ss_pred CCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 999999999999888888899999999888887763
No 13
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-49 Score=346.72 Aligned_cols=316 Identities=34% Similarity=0.546 Sum_probs=263.1
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
.|+++++.+.+++++++.+|||+|||++++.+++.. ..++++++|+++|+.|+.++++++.... +..+..+.|
T Consensus 20 ~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~ 92 (337)
T 2z0m_A 20 VQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYM-DTKVAEVYG 92 (337)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECT
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhc-CCcEEEEEC
Confidence 389999999999999999999999999998888764 2279999999999999999999887665 778999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.........+.. ++|+|+||+.+...+......+.++++||+||+|++.. .++...+..+....+...+++++|||
T Consensus 93 ~~~~~~~~~~~~~--~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~-~~~~~~~~~~~~~~~~~~~~~~~SAT 169 (337)
T 2z0m_A 93 GMPYKAQINRVRN--ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE-MGFIDDIKIILAQTSNRKITGLFSAT 169 (337)
T ss_dssp TSCHHHHHHHHTT--CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH-TTCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred CcchHHHHhhcCC--CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc-cccHHHHHHHHhhCCcccEEEEEeCc
Confidence 8877666555544 59999999999998888777788999999999999977 57778888888888888899999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~ 240 (356)
+++.....+..++.++..+... .........+.......+ .....+....++++||||++++.++.+++.|.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~-- 241 (337)
T 2z0m_A 170 IPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWR--SKVQALRENKDKGVIVFVRTRNRVAKLVRLFD-- 241 (337)
T ss_dssp CCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSH--HHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT--
T ss_pred CCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHH--HHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh--
Confidence 9998888888888877655332 222333444444433322 22244555677899999999999999988876
Q ss_pred CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEE
Q 018420 241 NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 320 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~ 320 (356)
.+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|.|...|.||+||+||.|++|.++++
T Consensus 242 --~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~ 319 (337)
T 2z0m_A 242 --NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITF 319 (337)
T ss_dssp --TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEE
T ss_pred --hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEE
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCChHHHHHHHHHhc
Q 018420 321 VSSASDSDILNQVQARFE 338 (356)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~ 338 (356)
+. .+...++.+++.++
T Consensus 320 ~~--~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 320 IL--NEYWLEKEVKKVSQ 335 (337)
T ss_dssp ES--SCHHHHHHHC----
T ss_pred Ee--CcHHHHHHHHHHhc
Confidence 98 56666777766544
No 14
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.2e-49 Score=370.86 Aligned_cols=340 Identities=24% Similarity=0.422 Sum_probs=272.9
Q ss_pred CccccHhhHh--cCCcEEEEccCCCccchHhHHHhhcCcCCC----CCCeeEEEEcCchHHHHHHHHHHHHHhc---cCC
Q 018420 1 MQHECIPQAI--LGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLCHTRELAYQICHEFERFST---YLP 71 (356)
Q Consensus 1 ~Q~~~~~~~~--~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~vlii~P~~~l~~q~~~~~~~~~~---~~~ 71 (356)
+|.++++.++ .++++++.+|||+|||++|+++++..+... ...++++|++|+++|+.|+.++++++.. ..+
T Consensus 47 ~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~ 126 (579)
T 3sqw_A 47 VQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLK 126 (579)
T ss_dssp HHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhccccc
Confidence 4899999999 688999999999999999999988765433 2334899999999999999999998764 234
Q ss_pred CceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC-CcccCCccEEEEeccccccccccchhHHHHHHhhC--
Q 018420 72 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-- 148 (356)
Q Consensus 72 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-- 148 (356)
...+..+.|+.........+....++|+|+||+.+..++... ...++.+++||+||||++.+ .++...+..+...+
T Consensus 127 ~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~gf~~~~~~i~~~l~~ 205 (579)
T 3sqw_A 127 KYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE-IGFRDDLETISGILNE 205 (579)
T ss_dssp TSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS-TTTHHHHHHHHHHHHH
T ss_pred ceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhc-CCCHHHHHHHHHHhhh
Confidence 567888889888777776666555799999999999877654 34578899999999999987 46777766665443
Q ss_pred -----CCCCcEEEEEecCccchHHHHHhhcCCCeEEEecccc---ccccccceEEEEEcChh-H-HHH---HHHHHHhc-
Q 018420 149 -----PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEA---KLTLHGLVQHYIKLSEL-E-KNR---KLNDLLDA- 214 (356)
Q Consensus 149 -----~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~-~~~---~~~~~~~~- 214 (356)
...++++++|||+++.+...+..++..+..+...... ......+...+...... . ... .+...+..
T Consensus 206 ~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (579)
T 3sqw_A 206 KNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER 285 (579)
T ss_dssp HCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT
T ss_pred hhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhc
Confidence 2367999999999998888888888888766554322 12223333444333321 1 222 22222332
Q ss_pred cCCCeEEEEecchhhHHHHHHHHHhC---CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEE
Q 018420 215 LDFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 291 (356)
Q Consensus 215 ~~~~~~ivf~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~ 291 (356)
....++||||++++.++.+++.|.+. +..+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~ 365 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 365 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE
Confidence 45689999999999999999999987 899999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCc
Q 018420 292 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIK 342 (356)
Q Consensus 292 ~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (356)
+++|.+...|+||+||+||.|+.|.+++++.+ .+..+++.+++.....+.
T Consensus 366 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 366 IGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIA 415 (579)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCC
T ss_pred cCCCCCHHHhhhhccccccCCCCceEEEEEcc-cHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999995 577778888877665554
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.9e-49 Score=368.36 Aligned_cols=341 Identities=25% Similarity=0.432 Sum_probs=271.6
Q ss_pred CccccHhhHh--cCCcEEEEccCCCccchHhHHHhhcCcCCCC----CCeeEEEEcCchHHHHHHHHHHHHHhcc---CC
Q 018420 1 MQHECIPQAI--LGMDVICQAKSGMGKTAVFVLSTLQQTEPNP----GQVTALVLCHTRELAYQICHEFERFSTY---LP 71 (356)
Q Consensus 1 ~Q~~~~~~~~--~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~~~~vlii~P~~~l~~q~~~~~~~~~~~---~~ 71 (356)
+|.++++.++ .++++++++|||+|||++|+++++..+.... ..++++|++|+++|+.|+.++++++... .+
T Consensus 98 ~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~ 177 (563)
T 3i5x_A 98 VQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLK 177 (563)
T ss_dssp HHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccC
Confidence 4899999999 6789999999999999999999887654432 2347999999999999999999987543 23
Q ss_pred CceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC-CcccCCccEEEEeccccccccccchhHHHHHHhhC--
Q 018420 72 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-- 148 (356)
Q Consensus 72 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-- 148 (356)
...+..+.|+.........+....++|+|+||+.+..++.+. ...++.+++||+||||++.+ .++...+..+...+
T Consensus 178 ~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~-~~f~~~~~~i~~~l~~ 256 (563)
T 3i5x_A 178 KYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE-IGFRDDLETISGILNE 256 (563)
T ss_dssp TSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS-TTTHHHHHHHHHHHHH
T ss_pred ceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhc-cchHHHHHHHHHhhhh
Confidence 567888888888777666665555799999999999877654 33567899999999999987 45777666665443
Q ss_pred -----CCCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccc---cccccceEEEEEcChh-HH-H---HHHHHHHhc-
Q 018420 149 -----PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAK---LTLHGLVQHYIKLSEL-EK-N---RKLNDLLDA- 214 (356)
Q Consensus 149 -----~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~- 214 (356)
....|++++|||+++.+......++..+..+....... .....+...+...... .. . ..+...+..
T Consensus 257 ~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 336 (563)
T 3i5x_A 257 KNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER 336 (563)
T ss_dssp HCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT
T ss_pred ccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhc
Confidence 34678999999999988888888888877666543221 2223333444333321 21 1 222222222
Q ss_pred cCCCeEEEEecchhhHHHHHHHHHhC---CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEE
Q 018420 215 LDFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN 291 (356)
Q Consensus 215 ~~~~~~ivf~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~ 291 (356)
..++++||||+++..++.+++.|.+. +..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~ 416 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 416 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE
Confidence 46689999999999999999999986 889999999999999999999999999999999999999999999999999
Q ss_pred ecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcc
Q 018420 292 YDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 343 (356)
Q Consensus 292 ~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (356)
++.|.+...|+||+||+||.|+.|.+++++.+ .+...++.+++.....++.
T Consensus 417 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~-~e~~~~~~l~~~~~~~~~~ 467 (563)
T 3i5x_A 417 IGVPSELANYIHRIGRTARSGKEGSSVLFICK-DELPFVRELEDAKNIVIAK 467 (563)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEG-GGHHHHHHHHHHHCCCCCE
T ss_pred ECCCCchhhhhhhcCccccCCCCceEEEEEch-hHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999995 5677788887776655543
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.7e-47 Score=353.41 Aligned_cols=309 Identities=18% Similarity=0.223 Sum_probs=244.3
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+++++++++.+|||+|||++|+++++..- .+++|++|+++|+.|+.+.++.+ ++.+..+.|
T Consensus 48 ~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~------g~~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~ 116 (591)
T 2v1x_A 48 LQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSD------GFTLVICPLISLMEDQLMVLKQL-----GISATMLNA 116 (591)
T ss_dssp THHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSS------SEEEEECSCHHHHHHHHHHHHHH-----TCCEEECCS
T ss_pred HHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcC------CcEEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeC
Confidence 5999999999999999999999999999999998642 28999999999999999999886 678888888
Q ss_pred CcchHHhHHHH-----hcCCCcEEEechHHHH------HHHhcCCcccCCccEEEEecccccccc-ccchhHHHH---HH
Q 018420 81 GVNIKIHKDLL-----KNECPQIVVGTPGRIL------ALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQE---IF 145 (356)
Q Consensus 81 ~~~~~~~~~~~-----~~~~~~i~v~T~~~l~------~~~~~~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~---~~ 145 (356)
+.......... ..+..+|+++||+++. ..+.. ...+..+++|||||||+++.+ ++|+..+.. +.
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~ 195 (591)
T 2v1x_A 117 SSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILK 195 (591)
T ss_dssp SCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHH
T ss_pred CCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECcccccccccccHHHHHHHHHHH
Confidence 87765444332 2456799999999874 22222 234568899999999999865 345555433 33
Q ss_pred hhCCCCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcC--hhHHHHHHHHHHhc-cCCCeEEE
Q 018420 146 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLS--ELEKNRKLNDLLDA-LDFNQVVI 222 (356)
Q Consensus 146 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~iv 222 (356)
... +..+++++|||+++.....+..++..+......... ...++...+.... .......+..++.. ..++++||
T Consensus 196 ~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~--~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IV 272 (591)
T 2v1x_A 196 RQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTFTASF--NRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGII 272 (591)
T ss_dssp HHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCC--CCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEE
T ss_pred HhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCC--CCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEE
Confidence 333 468899999999988777777766654433322211 1122222222221 22344555566653 36789999
Q ss_pred EecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhh
Q 018420 223 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 302 (356)
Q Consensus 223 f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~ 302 (356)
||++++.++.+++.|...+..+..+|+++++.+|..+++.|.+|+.+|||||+++++|+|+|++++||+++.|.|...|+
T Consensus 273 f~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~ 352 (591)
T 2v1x_A 273 YCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYY 352 (591)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHH
T ss_pred EeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCCcceEEEEEccC
Q 018420 303 HRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 303 Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
|++||+||.|++|.+++++.+.
T Consensus 353 Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 353 QESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp HHHTTSCTTSSCEEEEEEECHH
T ss_pred HHhccCCcCCCCceEEEEEChH
Confidence 9999999999999999998753
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=4.8e-47 Score=347.25 Aligned_cols=306 Identities=18% Similarity=0.265 Sum_probs=242.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
.|.++++.+++++++++.+|||+|||++|+++++..- .+++|++|+++|+.|+.+.++.+ ++.+..+++
T Consensus 29 ~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~------g~~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~ 97 (523)
T 1oyw_A 29 GQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLN------GLTVVVSPLISLMKDQVDQLQAN-----GVAAACLNS 97 (523)
T ss_dssp THHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSS------SEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECT
T ss_pred HHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhC------CCEEEECChHHHHHHHHHHHHHc-----CCcEEEEeC
Confidence 5999999999999999999999999999999888542 27999999999999999998875 678888888
Q ss_pred CcchHHhH---HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc-ccchhHHHH---HHhhCCCCCc
Q 018420 81 GVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQE---IFKMTPHDKQ 153 (356)
Q Consensus 81 ~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~---~~~~~~~~~~ 153 (356)
+....... ..+..+..+|+++||+.+........+...++++|||||||+++.+ ++++..+.. +.... +..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~ 176 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLP 176 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSC
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCC
Confidence 76654433 2334456799999999995322222233467889999999999865 345555443 33344 4578
Q ss_pred EEEEEecCccchHHHHHhhc--CCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHH
Q 018420 154 VMMFSATLSKEIRPVCKKFM--QDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAA 231 (356)
Q Consensus 154 ~i~~SaT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~ 231 (356)
++++|||+++.....+...+ .++.. ....... .++ .+.......+...+..++....++++||||++++.++
T Consensus 177 ~i~lSAT~~~~~~~~i~~~l~~~~~~~-~~~~~~r---~~l--~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e 250 (523)
T 1oyw_A 177 FMALTATADDTTRQDIVRLLGLNDPLI-QISSFDR---PNI--RYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVE 250 (523)
T ss_dssp EEEEESCCCHHHHHHHHHHHTCCSCEE-EECCCCC---TTE--EEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHhCCCCCeE-EeCCCCC---Cce--EEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHH
Confidence 99999999987655444433 33433 2222211 122 2222223344566777777777789999999999999
Q ss_pred HHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCC
Q 018420 232 ELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 311 (356)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 311 (356)
.+++.|.+.+..+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|.|...|.|++||+||.
T Consensus 251 ~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~ 330 (523)
T 1oyw_A 251 DTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (523)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTT
T ss_pred HHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEccC
Q 018420 312 GTKGLAITFVSSA 324 (356)
Q Consensus 312 ~~~~~~~~~~~~~ 324 (356)
|++|.+++++++.
T Consensus 331 g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 331 GLPAEAMLFYDPA 343 (523)
T ss_dssp SSCEEEEEEECHH
T ss_pred CCCceEEEEeCHH
Confidence 9999999999853
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.9e-47 Score=342.97 Aligned_cols=313 Identities=20% Similarity=0.324 Sum_probs=242.4
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+++++++++.+|||+|||++++++++.....+ ++++|++|+++|+.|+.+.++.+.. .++++..++|
T Consensus 25 ~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~---~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~~~~g 99 (414)
T 3oiy_A 25 YQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKG---KKSALVFPTVTLVKQTLERLQKLAD--EKVKIFGFYS 99 (414)
T ss_dssp HHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTT---CCEEEEESSHHHHHHHHHHHHHHCC--SSCCEEECCT
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCC---CEEEEEECCHHHHHHHHHHHHHHcc--CCceEEEEEC
Confidence 4899999999999999999999999998888877766332 3899999999999999999999876 3889999999
Q ss_pred Ccch---HHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc----------ccchhH-HHHHHh
Q 018420 81 GVNI---KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----------LDMRRD-VQEIFK 146 (356)
Q Consensus 81 ~~~~---~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~----------~~~~~~-~~~~~~ 146 (356)
+... ......+..+.++|+|+||+.+...+.. ....++++||+||||++..+ .++... +..+..
T Consensus 100 ~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~ 177 (414)
T 3oiy_A 100 SMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFS 177 (414)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHH
Confidence 9887 3444555556579999999999887664 55678999999999987543 344444 556665
Q ss_pred hCC-----------CCCcEEEEEec-CccchH-HHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHh
Q 018420 147 MTP-----------HDKQVMMFSAT-LSKEIR-PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD 213 (356)
Q Consensus 147 ~~~-----------~~~~~i~~SaT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (356)
.++ ...+++++||| ++.... .+...+.... . .........+.+.+.... +...+..++.
T Consensus 178 ~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~i~~~~~~~~---~~~~l~~~l~ 249 (414)
T 3oiy_A 178 TIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFT----V-GRLVSVARNITHVRISSR---SKEKLVELLE 249 (414)
T ss_dssp HHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCC----S-SCCCCCCCSEEEEEESSC---CHHHHHHHHH
T ss_pred hcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccC----c-CccccccccchheeeccC---HHHHHHHHHH
Confidence 544 67899999999 454433 2333332211 0 111122233444444432 3344555555
Q ss_pred ccCCCeEEEEecchhhHHHHHHHHHhCCCCeE-EEecCCCHHHHHHHHHHhhcCCCcEEEE----cCccccCCCCCC-CC
Q 018420 214 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CIHSGMSQEERLTRYKGFKEGNKRILVA----TDLVGRGIDIER-VN 287 (356)
Q Consensus 214 ~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~vlv~----t~~~~~G~d~~~-~~ 287 (356)
.. ++++||||++++.++.+++.|...+..+. .+||. +++ ++.|++|+++|||| |+++++|+|+|+ ++
T Consensus 250 ~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~-----~r~-~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~ 322 (414)
T 3oiy_A 250 IF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIK 322 (414)
T ss_dssp HH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH-----HHH-HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCC
T ss_pred Hc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc-----chH-HHHHhCCCCeEEEEecCcCchhhccCccccccC
Confidence 53 38999999999999999999999999998 88884 334 99999999999999 999999999999 99
Q ss_pred EEEEecCC--CChhhhhhccccccCCC----CcceEEEEEccCCChHHHHHHHHHhc
Q 018420 288 IVINYDMP--DSADTYLHRVGRAGRFG----TKGLAITFVSSASDSDILNQVQARFE 338 (356)
Q Consensus 288 ~vi~~~~~--~s~~~~~Q~~GR~~R~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (356)
+||+++.| .+..+|+||+||+||.| +.|.+++++ .+...++.+++.+.
T Consensus 323 ~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~---~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 323 YVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE---ccHHHHHHHHHHhc
Confidence 99999999 99999999999999987 467788777 56677777877766
No 19
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.2e-44 Score=329.45 Aligned_cols=319 Identities=19% Similarity=0.290 Sum_probs=236.5
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|.++++.+.++ ++++.+|||+|||++++.++...+. . ...+++|++|+++|+.||.++++++.+. +...+..++|+
T Consensus 14 Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~-~-~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~ 89 (494)
T 1wp9_A 14 QEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT-K-YGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIVALTGE 89 (494)
T ss_dssp HHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH-H-SCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSC
T ss_pred HHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh-c-CCCeEEEEECCHHHHHHHHHHHHHHhCc-chhheEEeeCC
Confidence 88999999988 9999999999999998888777654 1 2227999999999999999999988743 35689999998
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
............ ++|+|+||+.+...+........++++||+||||++.+...+...+ .......+..+++++||||
T Consensus 90 ~~~~~~~~~~~~--~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~-~~~~~~~~~~~~l~lTaTp 166 (494)
T 1wp9_A 90 KSPEERSKAWAR--AKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIA-REYKRQAKNPLVIGLTASP 166 (494)
T ss_dssp SCHHHHHHHHHH--CSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHH-HHHHHHCSSCCEEEEESCS
T ss_pred cchhhhhhhccC--CCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHH-HHHHhcCCCCeEEEEecCC
Confidence 776654443333 5899999999999888877788899999999999997633333333 3333344678899999999
Q ss_pred ccchH---HHHHhhcCCCeEEEecccccc--ccccceEEEE--Ec-----------------------------------
Q 018420 162 SKEIR---PVCKKFMQDPMEIYVDDEAKL--TLHGLVQHYI--KL----------------------------------- 199 (356)
Q Consensus 162 ~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~----------------------------------- 199 (356)
..+.. .+...+...+........... ........+. ..
T Consensus 167 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (494)
T 1wp9_A 167 GSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDI 246 (494)
T ss_dssp CSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTS
T ss_pred CCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCc
Confidence 85432 222222211111110000000 0000000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 018420 200 -------------------------------------------------------------------------------- 199 (356)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (356)
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (494)
T 1wp9_A 247 PKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMK 326 (494)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHH
T ss_pred chhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHH
Confidence
Q ss_pred -------------ChhHHHHHHHHHHhc----cCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEec--------CCCHH
Q 018420 200 -------------SELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHS--------GMSQE 254 (356)
Q Consensus 200 -------------~~~~~~~~~~~~~~~----~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~ 254 (356)
....+...+..++.. ..++++||||++++.+..+++.|...+..+..+|| +++..
T Consensus 327 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~ 406 (494)
T 1wp9_A 327 KAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQR 406 (494)
T ss_dssp HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CC
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHH
Confidence 111233344444444 46789999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChH
Q 018420 255 ERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSD 328 (356)
Q Consensus 255 ~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~ 328 (356)
+|.++++.|++|+.+|||+|+++++|+|+|.+++||++++|+++..|.||+||+||.|+ |.++.++..++.++
T Consensus 407 ~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 407 EQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp HHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred HHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 89998888654433
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2.5e-44 Score=335.16 Aligned_cols=322 Identities=21% Similarity=0.254 Sum_probs=191.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCC--CeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
.|.++++.+++++++++.+|||+|||++++++++..+...+. ..+++|++|+++|+.||.+.++++.... ++.+..+
T Consensus 11 ~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~ 89 (556)
T 4a2p_A 11 YQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGI 89 (556)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEE
Confidence 489999999999999999999999999999998887665431 3489999999999999999999988765 7899999
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCc-ccCCccEEEEeccccccccccchhHHHHHHhh----CCCCCc
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM----TPHDKQ 153 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~----~~~~~~ 153 (356)
+|+.........+..+ ++|+|+||+.+...+..... .+..+++||+||||++.++..+...+..+... ..+..+
T Consensus 90 ~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (556)
T 4a2p_A 90 SGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQ 168 (556)
T ss_dssp CCC-----CHHHHHHH-CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCE
T ss_pred eCCCCcchhHHHhhCC-CCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCCCCe
Confidence 9988665544444333 59999999999999988776 78899999999999997754333333333322 135678
Q ss_pred EEEEEecCccc----hHH-------H------------------HHhhcCCCeEEEecccccccc--cc-----------
Q 018420 154 VMMFSATLSKE----IRP-------V------------------CKKFMQDPMEIYVDDEAKLTL--HG----------- 191 (356)
Q Consensus 154 ~i~~SaT~~~~----~~~-------~------------------~~~~~~~~~~~~~~~~~~~~~--~~----------- 191 (356)
++++||||+.. ... . +..+...|............. ..
T Consensus 169 ~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (556)
T 4a2p_A 169 ILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEA 248 (556)
T ss_dssp EEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHH
Confidence 99999999532 111 1 111112222111110000000 00
Q ss_pred c----e--EEEEE-----c-------------------------------------------------------------
Q 018420 192 L----V--QHYIK-----L------------------------------------------------------------- 199 (356)
Q Consensus 192 ~----~--~~~~~-----~------------------------------------------------------------- 199 (356)
. . ..+.. .
T Consensus 249 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 328 (556)
T 4a2p_A 249 LMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALS 328 (556)
T ss_dssp HHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 0 0 00000 0
Q ss_pred ----------------------------------------ChhHHHHHHHHHHhc----cCCCeEEEEecchhhHHHHHH
Q 018420 200 ----------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNK 235 (356)
Q Consensus 200 ----------------------------------------~~~~~~~~~~~~~~~----~~~~~~ivf~~~~~~~~~~~~ 235 (356)
....+...+..++.. ..+.++||||+++..+..+++
T Consensus 329 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~ 408 (556)
T 4a2p_A 329 YLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKK 408 (556)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHH
Confidence 001122333333332 456899999999999999999
Q ss_pred HHHhC------------CCCeEEEecCCCHHHHHHHHHHhhc-CCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhh
Q 018420 236 LLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 302 (356)
Q Consensus 236 ~l~~~------------~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~ 302 (356)
.|.+. |.....+||++++.+|.++++.|++ |+++|||||+++++|+|+|++++||++++|+|+..|+
T Consensus 409 ~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~ 488 (556)
T 4a2p_A 409 CMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMI 488 (556)
T ss_dssp HHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHH
T ss_pred HHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHH
Confidence 99875 4455556788999999999999999 9999999999999999999999999999999999999
Q ss_pred hccccccCCCCcceEEEEEccCCC
Q 018420 303 HRVGRAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 303 Q~~GR~~R~~~~~~~~~~~~~~~~ 326 (356)
||+|| ||. ++|.+++++...+.
T Consensus 489 Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 489 QVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp HC----------CCEEEEESCHHH
T ss_pred HhcCC-CCC-CCceEEEEEeCcch
Confidence 99999 998 78999999886433
No 21
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.6e-45 Score=351.56 Aligned_cols=319 Identities=20% Similarity=0.280 Sum_probs=205.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCC--CeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
.|.++++.+++++++++++|||+|||++++++++..+...+. ..++++++|+++|+.||.+.++++.... ++.+..+
T Consensus 17 ~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~ 95 (696)
T 2ykg_A 17 YQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERH-GYRVTGI 95 (696)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccC-CceEEEE
Confidence 389999999999999999999999999999988876544321 2389999999999999999999988654 7899999
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCc-ccCCccEEEEeccccccccccchhHHHHHHhh-----CCCCC
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM-----TPHDK 152 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~-----~~~~~ 152 (356)
.|+.........+... ++|+|+||+.+...+..... .+..+++||+||||++.+...+...+...+.. ..+..
T Consensus 96 ~g~~~~~~~~~~~~~~-~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~ 174 (696)
T 2ykg_A 96 SGATAENVPVEQIVEN-NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLP 174 (696)
T ss_dssp CSSSCSSSCHHHHHHT-CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCC
T ss_pred eCCccccccHHHhccC-CCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCC
Confidence 9987655444444433 69999999999998887766 68889999999999998755444444333332 24568
Q ss_pred cEEEEEecCcc-------c-hHHHH---------------------HhhcCCCeEEEeccccccc-------------cc
Q 018420 153 QVMMFSATLSK-------E-IRPVC---------------------KKFMQDPMEIYVDDEAKLT-------------LH 190 (356)
Q Consensus 153 ~~i~~SaT~~~-------~-~~~~~---------------------~~~~~~~~~~~~~~~~~~~-------------~~ 190 (356)
+++++||||.. . ...+. ..+...|............ ..
T Consensus 175 ~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~ 254 (696)
T 2ykg_A 175 QVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTE 254 (696)
T ss_dssp EEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHH
T ss_pred eEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHH
Confidence 99999999972 1 11111 1111222221110000000 00
Q ss_pred --------------------------------------------------------------------------------
Q 018420 191 -------------------------------------------------------------------------------- 190 (356)
Q Consensus 191 -------------------------------------------------------------------------------- 190 (356)
T Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~ 334 (696)
T 2ykg_A 255 SLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDA 334 (696)
T ss_dssp HHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHH
Confidence
Q ss_pred -----------------cceEEEEE----------------cChhHHHHHHHHHHhcc----CCCeEEEEecchhhHHHH
Q 018420 191 -----------------GLVQHYIK----------------LSELEKNRKLNDLLDAL----DFNQVVIFVKSVSRAAEL 233 (356)
Q Consensus 191 -----------------~~~~~~~~----------------~~~~~~~~~~~~~~~~~----~~~~~ivf~~~~~~~~~~ 233 (356)
...+.+.. .....+...+..++... .++++||||++++.++.+
T Consensus 335 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l 414 (696)
T 2ykg_A 335 LDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDAL 414 (696)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHH
Confidence 00000000 00122344455555443 567999999999999999
Q ss_pred HHHHHhCC----CCeEEE--------ecCCCHHHHHHHHHHhhc-CCCcEEEEcCccccCCCCCCCCEEEEecCCCChhh
Q 018420 234 NKLLVECN----FPSICI--------HSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMPDSADT 300 (356)
Q Consensus 234 ~~~l~~~~----~~~~~~--------~~~~~~~~~~~~~~~f~~-~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~ 300 (356)
++.|...+ +++..+ |+++++.+|.++++.|++ |+.+|||||+++++|+|+|++++||++++|.|..+
T Consensus 415 ~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~ 494 (696)
T 2ykg_A 415 KNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIK 494 (696)
T ss_dssp HHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCC
T ss_pred HHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHH
Confidence 99999987 788888 559999999999999998 99999999999999999999999999999999999
Q ss_pred hhhccccccCCCCcceEEEEEcc
Q 018420 301 YLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 301 ~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
|+||+|| ||. ++|.++.++..
T Consensus 495 ~~Qr~GR-GR~-~~g~~~~l~~~ 515 (696)
T 2ykg_A 495 MIQTRGR-GRA-RGSKCFLLTSN 515 (696)
T ss_dssp C-----------CCCEEEEEESC
T ss_pred HHHhhcc-CcC-CCceEEEEecC
Confidence 9999999 997 78888888874
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.9e-44 Score=334.78 Aligned_cols=320 Identities=21% Similarity=0.253 Sum_probs=215.1
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCC--CeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
.|.++++.+++++++++.+|||+|||++++++++..+...+. ..+++|++|+++|+.||.+.++++.... ++.+..+
T Consensus 8 ~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~ 86 (555)
T 3tbk_A 8 YQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GYNIASI 86 (555)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-CcEEEEE
Confidence 489999999999999999999999999999999887765431 3489999999999999999999998766 7899999
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCc-ccCCccEEEEeccccccccccchhHHHHHHhhC-----CCCC
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-----PHDK 152 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-----~~~~ 152 (356)
+|+.........+..+ ++|+|+||+.+...+..... .+.++++||+||||++.+...+...+....... .+..
T Consensus 87 ~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (555)
T 3tbk_A 87 SGATSDSVSVQHIIED-NDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLP 165 (555)
T ss_dssp CTTTGGGSCHHHHHHH-CSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCC
T ss_pred cCCCcchhhHHHHhcC-CCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCC
Confidence 9988766554444433 59999999999998887776 688899999999999987544444444444332 2457
Q ss_pred cEEEEEecCccch----H---HHH---HhhcC-------------------CCeEEEecccccccc--c-----------
Q 018420 153 QVMMFSATLSKEI----R---PVC---KKFMQ-------------------DPMEIYVDDEAKLTL--H----------- 190 (356)
Q Consensus 153 ~~i~~SaT~~~~~----~---~~~---~~~~~-------------------~~~~~~~~~~~~~~~--~----------- 190 (356)
+++++||||.... . ..+ ...+. .|............. .
T Consensus 166 ~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (555)
T 3tbk_A 166 QVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETE 245 (555)
T ss_dssp EEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHH
T ss_pred eEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHH
Confidence 8999999995421 1 111 11111 111111100000000 0
Q ss_pred cc--------------e-E---------EEEE------------------------------------------------
Q 018420 191 GL--------------V-Q---------HYIK------------------------------------------------ 198 (356)
Q Consensus 191 ~~--------------~-~---------~~~~------------------------------------------------ 198 (356)
.. . . +...
T Consensus 246 ~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 325 (555)
T 3tbk_A 246 KLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDA 325 (555)
T ss_dssp HHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 00 0 0 0000
Q ss_pred -----------------------------------------cChhHHHHHHHHHHhc----cCCCeEEEEecchhhHHHH
Q 018420 199 -----------------------------------------LSELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAEL 233 (356)
Q Consensus 199 -----------------------------------------~~~~~~~~~~~~~~~~----~~~~~~ivf~~~~~~~~~~ 233 (356)
.....+...+..++.. ...+++||||+++..+..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l 405 (555)
T 3tbk_A 326 LNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDAL 405 (555)
T ss_dssp HHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHH
Confidence 0001122333333332 3568999999999999999
Q ss_pred HHHHHhCC------------CCeEEEecCCCHHHHHHHHHHhhc-CCCcEEEEcCccccCCCCCCCCEEEEecCCCChhh
Q 018420 234 NKLLVECN------------FPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMPDSADT 300 (356)
Q Consensus 234 ~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~~f~~-~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~ 300 (356)
++.|...+ .....+||++++.+|.++++.|++ |+++|||||+++++|+|+|++++||++++|+|+..
T Consensus 406 ~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~ 485 (555)
T 3tbk_A 406 KKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIK 485 (555)
T ss_dssp HHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCC
T ss_pred HHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHH
Confidence 99999864 334445669999999999999999 99999999999999999999999999999999999
Q ss_pred hhhccccccCCCCcceEEEEEccC
Q 018420 301 YLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 301 ~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
|+||+|| ||. ++|.+++++.+.
T Consensus 486 ~~Qr~GR-gR~-~~g~~~~l~~~~ 507 (555)
T 3tbk_A 486 MIQTRGR-GRA-RDSKCFLLTSSA 507 (555)
T ss_dssp EECSSCC-CTT-TSCEEEEEESCH
T ss_pred HHHhcCc-CcC-CCceEEEEEcCC
Confidence 9999999 998 889999998854
No 23
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-43 Score=346.73 Aligned_cols=316 Identities=19% Similarity=0.228 Sum_probs=241.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.+|++.+.++++++++||||||||+++.++++..+..+. +++|++|+++|+.|+++.+.+..+ .++.+.|
T Consensus 188 ~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~---rvlvl~PtraLa~Q~~~~l~~~~~-----~VglltG 259 (1108)
T 3l9o_A 188 FQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKALSNQKYRELLAEFG-----DVGLMTG 259 (1108)
T ss_dssp HHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHHHHTS-----SEEEECS
T ss_pred HHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEcCcHHHHHHHHHHHHHHhC-----CccEEeC
Confidence 48999999999999999999999999999999988875433 899999999999999999998763 6777888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.... ..++|+|+||+.|.+.+.+....++++++||+||||++.+ .++...+..+...++...+++++|||
T Consensus 260 d~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d-~~rg~~~e~ii~~l~~~~qvl~lSAT 330 (1108)
T 3l9o_A 260 DITIN--------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD-KERGVVWEETIILLPDKVRYVFLSAT 330 (1108)
T ss_dssp SCBCC--------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS-HHHHHHHHHHHHHSCTTSEEEEEECS
T ss_pred ccccC--------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc-cchHHHHHHHHHhcCCCceEEEEcCC
Confidence 76633 3369999999999998888777788999999999999976 56777788888888999999999999
Q ss_pred Cccc--hHHHHHhhcCCCeEEEeccccccccccce--------EEEEEcCh-----------------------------
Q 018420 161 LSKE--IRPVCKKFMQDPMEIYVDDEAKLTLHGLV--------QHYIKLSE----------------------------- 201 (356)
Q Consensus 161 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~----------------------------- 201 (356)
+++. ...++......|..+.............. ........
T Consensus 331 ipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 410 (1108)
T 3l9o_A 331 IPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRG 410 (1108)
T ss_dssp CSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---------------
T ss_pred CCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccc
Confidence 8875 33555555566665544333222211100 00000000
Q ss_pred ---------------hHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCC------------------------
Q 018420 202 ---------------LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNF------------------------ 242 (356)
Q Consensus 202 ---------------~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~------------------------ 242 (356)
......+...+.....+++||||+++..+..++..|...+.
T Consensus 411 ~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d 490 (1108)
T 3l9o_A 411 KKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETD 490 (1108)
T ss_dssp --------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHT
T ss_pred ccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhh
Confidence 11222233333444567999999999999999998865322
Q ss_pred ---------------CeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCC--------CChh
Q 018420 243 ---------------PSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMP--------DSAD 299 (356)
Q Consensus 243 ---------------~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~--------~s~~ 299 (356)
.+..+||++++.+|..+++.|++|.++|||||+++++|+|+|.+++||.++.+ .|..
T Consensus 491 ~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~ 570 (1108)
T 3l9o_A 491 RELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGG 570 (1108)
T ss_dssp TCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHH
T ss_pred hhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHH
Confidence 16889999999999999999999999999999999999999999999966543 3677
Q ss_pred hhhhccccccCCC--CcceEEEEEccCCChHHHHHH
Q 018420 300 TYLHRVGRAGRFG--TKGLAITFVSSASDSDILNQV 333 (356)
Q Consensus 300 ~~~Q~~GR~~R~~--~~~~~~~~~~~~~~~~~~~~~ 333 (356)
+|+||+||+||.| ..|.+++++.+..+...++.+
T Consensus 571 eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 571 EYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp HHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred HHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 8999999999999 577788888766555444433
No 24
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-43 Score=339.08 Aligned_cols=313 Identities=20% Similarity=0.238 Sum_probs=242.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+.+++++++++|||+|||+++.++++..+..+ .+++|++|+++|+.|+.+++.+... .++.++|
T Consensus 90 ~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g---~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vglltG 161 (1010)
T 2xgj_A 90 FQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKALSNQKYRELLAEFG-----DVGLMTG 161 (1010)
T ss_dssp HHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHS-----CEEEECS
T ss_pred HHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC---CeEEEECChHHHHHHHHHHHHHHhC-----CEEEEeC
Confidence 4899999999999999999999999999988888766433 3899999999999999999998763 6778888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+..... ..+|+|+||+.+.+.+.+....+.++++||+||+|++.+ ..+...+..+...++...+++++|||
T Consensus 162 d~~~~~--------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d-~~rg~~~e~il~~l~~~~~il~LSAT 232 (1010)
T 2xgj_A 162 DITINP--------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD-KERGVVWEETIILLPDKVRYVFLSAT 232 (1010)
T ss_dssp SCEECT--------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-TTTHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CCccCC--------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc-cchhHHHHHHHHhcCCCCeEEEEcCC
Confidence 766432 358999999999998887777789999999999999976 45667778888888889999999999
Q ss_pred Cccch--HHHHHhhcCCCeEEEeccccccccccceEEEEEc---------Ch----------------------------
Q 018420 161 LSKEI--RPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKL---------SE---------------------------- 201 (356)
Q Consensus 161 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---------------------------- 201 (356)
+++.. ..++....+.+..+......... +...+... ..
T Consensus 233 i~n~~e~a~~l~~~~~~~~~vi~~~~rp~p---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 309 (1010)
T 2xgj_A 233 IPNAMEFAEWICKIHSQPCHIVYTNFRPTP---LQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTD 309 (1010)
T ss_dssp CTTHHHHHHHHHHHHTSCEEEEEECCCSSC---EEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----------
T ss_pred CCCHHHHHHHHHhhcCCCeEEEecCCCccc---ceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccc
Confidence 98642 23333334555554433222211 11111100 00
Q ss_pred ------------------hHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCC--------------------
Q 018420 202 ------------------LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFP-------------------- 243 (356)
Q Consensus 202 ------------------~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~-------------------- 243 (356)
......+...+......++||||+++..++.++..|...+..
T Consensus 310 ~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 389 (1010)
T 2xgj_A 310 SRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLP 389 (1010)
T ss_dssp -------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSC
T ss_pred cccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcc
Confidence 011122333333445568999999999999999998775432
Q ss_pred -------------------eEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEE----ecC----CC
Q 018420 244 -------------------SICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YDM----PD 296 (356)
Q Consensus 244 -------------------~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~----~~~----~~ 296 (356)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|.+++||. |+. |.
T Consensus 390 ~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~ 469 (1010)
T 2xgj_A 390 ETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWV 469 (1010)
T ss_dssp GGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEEC
T ss_pred hhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccC
Confidence 678999999999999999999999999999999999999999999998 887 88
Q ss_pred ChhhhhhccccccCCCC--cceEEEEEccCCChHHHHHH
Q 018420 297 SADTYLHRVGRAGRFGT--KGLAITFVSSASDSDILNQV 333 (356)
Q Consensus 297 s~~~~~Q~~GR~~R~~~--~~~~~~~~~~~~~~~~~~~~ 333 (356)
|..+|.||+||+||.|. .|.+++++.+..+...++.+
T Consensus 470 s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 470 SGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp CHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 99999999999999987 48888888865454443333
No 25
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.9e-43 Score=340.16 Aligned_cols=321 Identities=21% Similarity=0.250 Sum_probs=198.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCC--CeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
.|.++++.+++++++++++|||+|||++++++++..+...+. ..+++|++|+++|+.|+.+.++++.... ++++..+
T Consensus 252 ~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~ 330 (797)
T 4a2q_A 252 YQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGI 330 (797)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccC-CceEEEE
Confidence 389999999999999999999999999999998887765431 3489999999999999999999998765 7899999
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCc-ccCCccEEEEeccccccccccchhHHHHHHhh----CCCCCc
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM----TPHDKQ 153 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~----~~~~~~ 153 (356)
+|+.........+..+ ++|+|+||+.+...+..... .+.++++||+||||++.....+...+..+... ..+..+
T Consensus 331 ~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 409 (797)
T 4a2q_A 331 SGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQ 409 (797)
T ss_dssp CCC-----CHHHHHHT-CSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCE
T ss_pred eCCcchhhhHHHhhCC-CCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCe
Confidence 9988766554444444 69999999999998887776 68889999999999998744444444344332 245688
Q ss_pred EEEEEecCccc-----------hHH------------------HHHhhcCCCeEEEecccccc--ccc------------
Q 018420 154 VMMFSATLSKE-----------IRP------------------VCKKFMQDPMEIYVDDEAKL--TLH------------ 190 (356)
Q Consensus 154 ~i~~SaT~~~~-----------~~~------------------~~~~~~~~~~~~~~~~~~~~--~~~------------ 190 (356)
++++||||... +.. .+..+...|........... ...
T Consensus 410 ~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 489 (797)
T 4a2q_A 410 ILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEA 489 (797)
T ss_dssp EEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHH
Confidence 99999999531 111 11112222221111110000 000
Q ss_pred ---c---------ceEEEE-E------c----------------------------------------------------
Q 018420 191 ---G---------LVQHYI-K------L---------------------------------------------------- 199 (356)
Q Consensus 191 ---~---------~~~~~~-~------~---------------------------------------------------- 199 (356)
. ...... . .
T Consensus 490 ~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 569 (797)
T 4a2q_A 490 LMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALS 569 (797)
T ss_dssp HHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHH
Confidence 0 000000 0 0
Q ss_pred ----------------------------------------ChhHHHHHHHHHHhc----cCCCeEEEEecchhhHHHHHH
Q 018420 200 ----------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNK 235 (356)
Q Consensus 200 ----------------------------------------~~~~~~~~~~~~~~~----~~~~~~ivf~~~~~~~~~~~~ 235 (356)
....+...+..++.. ..+.++||||+++..+..+++
T Consensus 570 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~ 649 (797)
T 4a2q_A 570 YLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKK 649 (797)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHH
Confidence 001122233333332 456899999999999999999
Q ss_pred HHHhC------------CCCeEEEecCCCHHHHHHHHHHhhc-CCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhh
Q 018420 236 LLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 302 (356)
Q Consensus 236 ~l~~~------------~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~ 302 (356)
.|.+. |.....+||++++.+|.++++.|++ |+++|||||+++++|+|+|.+++||++++|+|+..|+
T Consensus 650 ~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~i 729 (797)
T 4a2q_A 650 CMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMI 729 (797)
T ss_dssp HHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHH
T ss_pred HHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHH
Confidence 99873 4455567888999999999999999 9999999999999999999999999999999999999
Q ss_pred hccccccCCCCcceEEEEEccCC
Q 018420 303 HRVGRAGRFGTKGLAITFVSSAS 325 (356)
Q Consensus 303 Q~~GR~~R~~~~~~~~~~~~~~~ 325 (356)
||+|| ||. ++|.++.++...+
T Consensus 730 Qr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 730 QVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp TC---------CCCEEEEECCHH
T ss_pred HhcCC-CCC-CCceEEEEEeCCc
Confidence 99999 998 7899999987543
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1e-42 Score=331.18 Aligned_cols=308 Identities=17% Similarity=0.259 Sum_probs=229.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+.+++++++++|||||||+++.++++..+..+ .+++|++|+++|+.|++++++.+. .. ++++..+.|
T Consensus 29 ~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~l~i~P~r~La~q~~~~~~~~~-~~-g~~v~~~~G 103 (702)
T 2p6r_A 29 PQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG---GKSLYVVPLRALAGEKYESFKKWE-KI-GLRIGISTG 103 (702)
T ss_dssp CCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHTTTT-TT-TCCEEEECS
T ss_pred HHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CcEEEEeCcHHHHHHHHHHHHHHH-hc-CCEEEEEeC
Confidence 5999999999999999999999999999988888766532 289999999999999999996443 23 789999998
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhh---CCCCCcEEEE
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM---TPHDKQVMMF 157 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~---~~~~~~~i~~ 157 (356)
+....... ...++|+|+||+++..++.+....++++++||+||+|.+.+ ......+..+... ..++.+++++
T Consensus 104 ~~~~~~~~----~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~-~~r~~~~~~ll~~l~~~~~~~~ii~l 178 (702)
T 2p6r_A 104 DYESRDEH----LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDS-EKRGATLEILVTKMRRMNKALRVIGL 178 (702)
T ss_dssp SCBCCSSC----STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGC-TTTHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCCcchhh----ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCC-CCcccHHHHHHHHHHhcCcCceEEEE
Confidence 76654321 12469999999999998888766688999999999999865 3344444333332 3567899999
Q ss_pred EecCccchHHHHHhhcCCCeEEEeccccccccc-----cceEEEEEcC-----hhHHHHHHHHHHhccCCCeEEEEecch
Q 018420 158 SATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH-----GLVQHYIKLS-----ELEKNRKLNDLLDALDFNQVVIFVKSV 227 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ivf~~~~ 227 (356)
|||+++ ...+.. +++.+. +.. ........ .....+.... .......+...+. .++++||||+++
T Consensus 179 SATl~n-~~~~~~-~l~~~~-~~~-~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~ 252 (702)
T 2p6r_A 179 SATAPN-VTEIAE-WLDADY-YVS-DWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTR 252 (702)
T ss_dssp ECCCTT-HHHHHH-HTTCEE-EEC-CCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSH
T ss_pred CCCcCC-HHHHHH-HhCCCc-ccC-CCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCH
Confidence 999985 344444 333221 111 11000000 0000111100 0013344444443 458999999999
Q ss_pred hhHHHHHHHHHhC------------------------------CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCcc
Q 018420 228 SRAAELNKLLVEC------------------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLV 277 (356)
Q Consensus 228 ~~~~~~~~~l~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~ 277 (356)
+.++.++..|.+. +..+..+||++++.+|..+++.|++|+++|||||+++
T Consensus 253 ~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l 332 (702)
T 2p6r_A 253 RGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTL 332 (702)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTT
T ss_pred HHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHH
Confidence 9999999988753 1357789999999999999999999999999999999
Q ss_pred ccCCCCCCCCEEEE----ec---CCCChhhhhhccccccCCCC--cceEEEEEccC
Q 018420 278 GRGIDIERVNIVIN----YD---MPDSADTYLHRVGRAGRFGT--KGLAITFVSSA 324 (356)
Q Consensus 278 ~~G~d~~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~~~--~~~~~~~~~~~ 324 (356)
++|+|+|.+.+||. |+ .|.|..+|.||+||+||.|. .|.|++++...
T Consensus 333 ~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 333 AAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 388 (702)
T ss_dssp TSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred hccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCc
Confidence 99999999999998 54 68899999999999999884 67788887753
No 27
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2e-42 Score=336.28 Aligned_cols=321 Identities=21% Similarity=0.250 Sum_probs=199.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCC--CeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPG--QVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
.|.++++.+++++++++++|||+|||++++++++..+...+. ..+++|++|+++|+.||.++++++.... ++.+..+
T Consensus 252 ~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~~~ 330 (936)
T 4a2w_A 252 YQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGI 330 (936)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEE
Confidence 389999999999999999999999999999999888776541 3479999999999999999999988765 7899999
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCc-ccCCccEEEEeccccccccccchhHHHHHHhh----CCCCCc
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL-SLKNVRHFILDECDKMLESLDMRRDVQEIFKM----TPHDKQ 153 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~-~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~----~~~~~~ 153 (356)
+|+.........+... ++|+|+||+.+...+.+... .+.++++||+||||++.....+...+..+... ..+..+
T Consensus 331 ~G~~~~~~~~~~~~~~-~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 409 (936)
T 4a2w_A 331 SGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQ 409 (936)
T ss_dssp CCC-----CCHHHHHH-CSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCE
T ss_pred ECCcchhhHHHHhccC-CCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCe
Confidence 9987655433333332 59999999999998887766 67889999999999998754444444444332 245678
Q ss_pred EEEEEecCccc-----------hHH------------------HHHhhcCCCeEEEeccccccc--cc------------
Q 018420 154 VMMFSATLSKE-----------IRP------------------VCKKFMQDPMEIYVDDEAKLT--LH------------ 190 (356)
Q Consensus 154 ~i~~SaT~~~~-----------~~~------------------~~~~~~~~~~~~~~~~~~~~~--~~------------ 190 (356)
++++||||... +.. .+..+...|............ ..
T Consensus 410 ~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~ 489 (936)
T 4a2w_A 410 ILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEA 489 (936)
T ss_dssp EEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHH
Confidence 99999999531 111 111122222222211110000 00
Q ss_pred ---c---------ceEEEE-E------c----------------------------------------------------
Q 018420 191 ---G---------LVQHYI-K------L---------------------------------------------------- 199 (356)
Q Consensus 191 ---~---------~~~~~~-~------~---------------------------------------------------- 199 (356)
. ...... . .
T Consensus 490 ~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~ 569 (936)
T 4a2w_A 490 LMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALS 569 (936)
T ss_dssp HHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Confidence 0 000000 0 0
Q ss_pred ----------------------------------------ChhHHHHHHHHHHhc----cCCCeEEEEecchhhHHHHHH
Q 018420 200 ----------------------------------------SELEKNRKLNDLLDA----LDFNQVVIFVKSVSRAAELNK 235 (356)
Q Consensus 200 ----------------------------------------~~~~~~~~~~~~~~~----~~~~~~ivf~~~~~~~~~~~~ 235 (356)
....+...+..++.. ..+.++||||+++..+..+++
T Consensus 570 ~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~ 649 (936)
T 4a2w_A 570 YLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKK 649 (936)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHH
Confidence 001122223334433 356899999999999999999
Q ss_pred HHHhC------------CCCeEEEecCCCHHHHHHHHHHhhc-CCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhh
Q 018420 236 LLVEC------------NFPSICIHSGMSQEERLTRYKGFKE-GNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYL 302 (356)
Q Consensus 236 ~l~~~------------~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~ 302 (356)
.|.+. |.....+||++++.+|.++++.|++ |+++|||||+++++|+|+|.+++||++++|+|+..|+
T Consensus 650 ~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~i 729 (936)
T 4a2w_A 650 CMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMI 729 (936)
T ss_dssp HHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHH
T ss_pred HHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHH
Confidence 99986 4455556888999999999999999 9999999999999999999999999999999999999
Q ss_pred hccccccCCCCcceEEEEEccCC
Q 018420 303 HRVGRAGRFGTKGLAITFVSSAS 325 (356)
Q Consensus 303 Q~~GR~~R~~~~~~~~~~~~~~~ 325 (356)
||+|| ||. ++|.++.++...+
T Consensus 730 Qr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 730 QVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp CC---------CCCEEEEESCHH
T ss_pred HhcCC-CCC-CCCEEEEEEeCCC
Confidence 99999 998 7888888887543
No 28
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.6e-42 Score=327.06 Aligned_cols=307 Identities=21% Similarity=0.232 Sum_probs=225.4
Q ss_pred CccccHhh-HhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+|.++++. +.+++++++++|||||||+++.++++..+.... .+++|++|+++|+.|++++++.+.. . +.++..+.
T Consensus 34 ~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~--~~il~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~ 109 (715)
T 2va8_A 34 PQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG--GKAIYVTPLRALTNEKYLTFKDWEL-I-GFKVAMTS 109 (715)
T ss_dssp HHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--SEEEEECSCHHHHHHHHHHHGGGGG-G-TCCEEECC
T ss_pred HHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC--CeEEEEeCcHHHHHHHHHHHHHhhc-C-CCEEEEEe
Confidence 48899999 778999999999999999999888887654221 2899999999999999999964433 3 78899988
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
|+....... .. .++|+|+||+.+..++.+....++++++||+||+|.+.+ ..+...+..+....+ +.+++++||
T Consensus 110 G~~~~~~~~--~~--~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~-~~~~~~l~~i~~~~~-~~~ii~lSA 183 (715)
T 2va8_A 110 GDYDTDDAW--LK--NYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND-PERGPVVESVTIRAK-RRNLLALSA 183 (715)
T ss_dssp SCSSSCCGG--GG--GCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC-TTTHHHHHHHHHHHH-TSEEEEEES
T ss_pred CCCCCchhh--cC--CCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC-cccchHHHHHHHhcc-cCcEEEEcC
Confidence 876554321 12 369999999999998887766688999999999999865 355555665555544 788999999
Q ss_pred cCccchHHHHHhhcCCCeEEEeccccccccccc---------eEEEEEcC--------hhHHHHHHHHHHhccCCCeEEE
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL---------VQHYIKLS--------ELEKNRKLNDLLDALDFNQVVI 222 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~iv 222 (356)
|+++. ..+..++ +.+. +.. .......... ........ .......+...+. .++++||
T Consensus 184 Tl~n~-~~~~~~l-~~~~-~~~-~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LV 257 (715)
T 2va8_A 184 TISNY-KQIAKWL-GAEP-VAT-NWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLV 257 (715)
T ss_dssp CCTTH-HHHHHHH-TCEE-EEC-CCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEE
T ss_pred CCCCH-HHHHHHh-CCCc-cCC-CCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEE
Confidence 99752 4444433 3221 110 0000000000 00000000 1223334444333 4589999
Q ss_pred EecchhhHHHHHHHHHhCC------------------------------------CCeEEEecCCCHHHHHHHHHHhhcC
Q 018420 223 FVKSVSRAAELNKLLVECN------------------------------------FPSICIHSGMSQEERLTRYKGFKEG 266 (356)
Q Consensus 223 f~~~~~~~~~~~~~l~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~f~~~ 266 (356)
||++++.++.++..|.+.. ..+..+||++++.+|..+++.|++|
T Consensus 258 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g 337 (715)
T 2va8_A 258 FRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQR 337 (715)
T ss_dssp ECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT
T ss_pred EECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcC
Confidence 9999999999999998752 2488899999999999999999999
Q ss_pred CCcEEEEcCccccCCCCCCCCEEEE----ec-------CCCChhhhhhccccccCCCC--cceEEEEEcc
Q 018420 267 NKRILVATDLVGRGIDIERVNIVIN----YD-------MPDSADTYLHRVGRAGRFGT--KGLAITFVSS 323 (356)
Q Consensus 267 ~~~vlv~t~~~~~G~d~~~~~~vi~----~~-------~~~s~~~~~Q~~GR~~R~~~--~~~~~~~~~~ 323 (356)
.++|||||+++++|+|+|.+.+||. |+ .|.|..+|.||+||+||.|. .|.|++++..
T Consensus 338 ~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 338 KIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp CSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred CCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 9999999999999999999999998 88 78999999999999999874 6778888764
No 29
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.7e-43 Score=332.83 Aligned_cols=329 Identities=19% Similarity=0.206 Sum_probs=237.6
Q ss_pred CccccHhh-HhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQ-AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~-~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+|.++++. +.+++++++++|||||||+++.++++..+... +.+++|++|+++|+.|++++++++.. . ++++..++
T Consensus 27 ~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~ 102 (720)
T 2zj8_A 27 PQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEK-I-GLRVAMAT 102 (720)
T ss_dssp HHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGG-G-TCCEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHh-c-CCEEEEec
Confidence 48999998 78899999999999999999988888665422 12899999999999999999965543 2 78999999
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
|+....... . ..++|+|+||+++..++.+....++++++||+||+|.+.+ ......+..+...+..+.+++++||
T Consensus 103 G~~~~~~~~--~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~-~~r~~~~~~ll~~l~~~~~ii~lSA 177 (720)
T 2zj8_A 103 GDYDSKDEW--L--GKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGS-RDRGATLEVILAHMLGKAQIIGLSA 177 (720)
T ss_dssp SCSSCCCGG--G--GGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC-TTTHHHHHHHHHHHBTTBEEEEEEC
T ss_pred CCCCccccc--c--CCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCC-CcccHHHHHHHHHhhcCCeEEEEcC
Confidence 976543321 1 2369999999999998887666678999999999999865 3555666666665555789999999
Q ss_pred cCccchHHHHHhhcCCCeEEEeccccccccccc---eEEEEEcC-----hhHHHHHHHHHHhccCCCeEEEEecchhhHH
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL---VQHYIKLS-----ELEKNRKLNDLLDALDFNQVVIFVKSVSRAA 231 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~ 231 (356)
|+++. ..+..+ ++.+. ............. ........ .......+...+. .++++||||++++.++
T Consensus 178 Tl~n~-~~~~~~-l~~~~--~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~ 251 (720)
T 2zj8_A 178 TIGNP-EELAEW-LNAEL--IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAE 251 (720)
T ss_dssp CCSCH-HHHHHH-TTEEE--EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHH
T ss_pred CcCCH-HHHHHH-hCCcc--cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHH
Confidence 99853 444443 33211 1111000000000 00000000 1122233333333 4589999999999999
Q ss_pred HHHHHHHhC---------------------------------CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccc
Q 018420 232 ELNKLLVEC---------------------------------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVG 278 (356)
Q Consensus 232 ~~~~~l~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~ 278 (356)
.++..|.+. ...+..+||++++.+|..+++.|++|.++|||||++++
T Consensus 252 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~ 331 (720)
T 2zj8_A 252 RVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLS 331 (720)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTG
T ss_pred HHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhh
Confidence 999988753 12488899999999999999999999999999999999
Q ss_pred cCCCCCCCCEEEE----ec----CCCChhhhhhccccccCCCC--cceEEEEEccCCChHHHHHHHHHhcccCcccCcc
Q 018420 279 RGIDIERVNIVIN----YD----MPDSADTYLHRVGRAGRFGT--KGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 347 (356)
Q Consensus 279 ~G~d~~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (356)
+|+|+|.+++||. |+ .|.|..+|.||+||+||.|. .|.+++++...+ ....+++.+......+.+.
T Consensus 332 ~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~---~~~~~~~~~~~~~~~i~s~ 407 (720)
T 2zj8_A 332 AGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDD---PREVMNHYIFGKPEKLFSQ 407 (720)
T ss_dssp GGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSC---HHHHHHHHTTSCCCCCCCC
T ss_pred ccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCcc---HHHHHHHHhcCCCCCcEee
Confidence 9999999999997 55 58899999999999999874 677888877543 2233444444444444433
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=8.4e-43 Score=332.89 Aligned_cols=319 Identities=22% Similarity=0.292 Sum_probs=216.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCC---CCeeEEEEcCchHHHHHH-HHHHHHHhccCCCceEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTRELAYQI-CHEFERFSTYLPDIKVA 76 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~---~~~~vlii~P~~~l~~q~-~~~~~~~~~~~~~~~v~ 76 (356)
.|.++++.+++++++++.+|||+|||++++++++..+..+. ...+++|++|+++|+.|| .++++++... ++.+.
T Consensus 11 ~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~--~~~v~ 88 (699)
T 4gl2_A 11 YQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--WYRVI 88 (699)
T ss_dssp HHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--TSCEE
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--CceEE
Confidence 38999999999999999999999999999998887654432 113799999999999999 9999998754 47999
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHH------hcCCcccCCccEEEEeccccccccccchhHHHHHHhhC--
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALA------RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-- 148 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~------~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-- 148 (356)
.++|+.........+... .+|+|+||+.+...+ ......+..+++||+||||++.....+...+..+....
T Consensus 89 ~~~g~~~~~~~~~~~~~~-~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~ 167 (699)
T 4gl2_A 89 GLSGDTQLKISFPEVVKS-CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLK 167 (699)
T ss_dssp EEC----CCCCHHHHHHS-CSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHH
T ss_pred EEeCCcchhhHHHhhhcC-CCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhhhc
Confidence 999987765544444333 699999999999877 44556778899999999999865444444444333221
Q ss_pred -----------CCCCcEEEEEecCccc-----------hHHHHHhh------------------cCCCeEEEeccccccc
Q 018420 149 -----------PHDKQVMMFSATLSKE-----------IRPVCKKF------------------MQDPMEIYVDDEAKLT 188 (356)
Q Consensus 149 -----------~~~~~~i~~SaT~~~~-----------~~~~~~~~------------------~~~~~~~~~~~~~~~~ 188 (356)
.+.++++++||||... +......+ ...|............
T Consensus 168 ~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 247 (699)
T 4gl2_A 168 NNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATRE 247 (699)
T ss_dssp HHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC----
T ss_pred ccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccC
Confidence 1557899999999863 11111111 1122211110000000
Q ss_pred ----------------------cccce-----E-----------------------------------------------
Q 018420 189 ----------------------LHGLV-----Q----------------------------------------------- 194 (356)
Q Consensus 189 ----------------------~~~~~-----~----------------------------------------------- 194 (356)
..... .
T Consensus 248 ~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 327 (699)
T 4gl2_A 248 DPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLE 327 (699)
T ss_dssp -CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0
Q ss_pred -------------------EEEEcC--------------------------hhHH----HHHHHHHHhccC-CCeEEEEe
Q 018420 195 -------------------HYIKLS--------------------------ELEK----NRKLNDLLDALD-FNQVVIFV 224 (356)
Q Consensus 195 -------------------~~~~~~--------------------------~~~~----~~~~~~~~~~~~-~~~~ivf~ 224 (356)
...... ...+ ...+...+.... ++++||||
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~ 407 (699)
T 4gl2_A 328 TFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFT 407 (699)
T ss_dssp HHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEEC
T ss_pred HHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEE
Confidence 000000 0000 011111122223 68999999
Q ss_pred cchhhHHHHHHHHHhC------CCCeEEEecC--------CCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEE
Q 018420 225 KSVSRAAELNKLLVEC------NFPSICIHSG--------MSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVI 290 (356)
Q Consensus 225 ~~~~~~~~~~~~l~~~------~~~~~~~~~~--------~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi 290 (356)
++++.++.+++.|.+. |+++..+||+ +++.+|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 408 ~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI 487 (699)
T 4gl2_A 408 KTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI 487 (699)
T ss_dssp SCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCE
T ss_pred CcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEE
Confidence 9999999999999987 8999999999 9999999999999999999999999999999999999999
Q ss_pred EecCCCChhhhhhccccccCCCCcceEEEEEccCC
Q 018420 291 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 325 (356)
Q Consensus 291 ~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 325 (356)
++++|+|+..|+||+||+||.| .+++++...+
T Consensus 488 ~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~~~ 519 (699)
T 4gl2_A 488 RYGLVTNEIAMVQARGRARADE---STYVLVAHSG 519 (699)
T ss_dssp EESCCCCHHHHHHHHTTSCSSS---CEEEEEEESS
T ss_pred EeCCCCCHHHHHHHcCCCCCCC---ceEEEEEeCC
Confidence 9999999999999999976644 4444444333
No 31
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.1e-42 Score=338.40 Aligned_cols=313 Identities=19% Similarity=0.319 Sum_probs=241.6
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.++++++++++||||||||++++.+++..+..+ .+++|++|+++|+.|+.+.++.+. . .++++..++|
T Consensus 82 iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~---~~~Lil~PtreLa~Q~~~~l~~l~-~-~~i~v~~l~G 156 (1104)
T 4ddu_A 82 YQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKG---KKSALVFPTVTLVKQTLERLQKLA-D-EKVKIFGFYS 156 (1104)
T ss_dssp HHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTT---CCEEEEESSHHHHHHHHHHHHTTS-C-TTSCEEEECT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---CeEEEEechHHHHHHHHHHHHHhh-C-CCCeEEEEeC
Confidence 4899999999999999999999999998888777766333 379999999999999999999966 3 3889999999
Q ss_pred Ccch---HHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc----------ccchhH-HHHHHh
Q 018420 81 GVNI---KIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES----------LDMRRD-VQEIFK 146 (356)
Q Consensus 81 ~~~~---~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~----------~~~~~~-~~~~~~ 146 (356)
+... ......+..+.++|+|+||+.+..++.. +.+.++++||+||||++... .++... +..+..
T Consensus 157 g~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~ 234 (1104)
T 4ddu_A 157 SMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFS 234 (1104)
T ss_dssp TCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHH
Confidence 9887 4555666666689999999999887664 56678999999999987642 244444 666666
Q ss_pred hCC-----------CCCcEEEEEecC-ccchH-HHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHh
Q 018420 147 MTP-----------HDKQVMMFSATL-SKEIR-PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD 213 (356)
Q Consensus 147 ~~~-----------~~~~~i~~SaT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (356)
.++ ...|++++|||+ +.... ......+.- .. .........+.+.+... .+...+..++.
T Consensus 235 ~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i----~v-~~~~~~~~~i~~~~~~~---~k~~~L~~ll~ 306 (1104)
T 4ddu_A 235 TIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF----TV-GRLVSVARNITHVRISS---RSKEKLVELLE 306 (1104)
T ss_dssp HHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCC----CC-CBCCCCCCCEEEEEESC---CCHHHHHHHHH
T ss_pred hcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeE----Ee-ccCCCCcCCceeEEEec---CHHHHHHHHHH
Confidence 554 678999999994 44433 223333321 11 11122233444555444 23444555555
Q ss_pred ccCCCeEEEEecchhhHHHHHHHHHhCCCCeE-EEecCCCHHHHHHHHHHhhcCCCcEEEE----cCccccCCCCCC-CC
Q 018420 214 ALDFNQVVIFVKSVSRAAELNKLLVECNFPSI-CIHSGMSQEERLTRYKGFKEGNKRILVA----TDLVGRGIDIER-VN 287 (356)
Q Consensus 214 ~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~vlv~----t~~~~~G~d~~~-~~ 287 (356)
.. ++++||||++++.++.++..|...+..+. .+|| +|++ ++.|++|+.+|||| |+++++|+|+|+ ++
T Consensus 307 ~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~ 379 (1104)
T 4ddu_A 307 IF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIK 379 (1104)
T ss_dssp HH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCC
T ss_pred hc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCC
Confidence 53 38999999999999999999999999998 8898 3555 99999999999999 999999999999 99
Q ss_pred EEEEecCCC-----------------------------------------------------------------------
Q 018420 288 IVINYDMPD----------------------------------------------------------------------- 296 (356)
Q Consensus 288 ~vi~~~~~~----------------------------------------------------------------------- 296 (356)
+||+++.|.
T Consensus 380 ~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~ 459 (1104)
T 4ddu_A 380 YVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELII 459 (1104)
T ss_dssp EEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEE
T ss_pred EEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEe
Confidence 999999998
Q ss_pred -ChhhhhhccccccCCCCc----ceEEEEEccCCChHHHHHHHHHhc
Q 018420 297 -SADTYLHRVGRAGRFGTK----GLAITFVSSASDSDILNQVQARFE 338 (356)
Q Consensus 297 -s~~~~~Q~~GR~~R~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 338 (356)
+..+|+||+||+||.+.. |.+++++ ++...++.+++.+.
T Consensus 460 pd~~tYihr~GRtgR~~~gg~~~Glsi~~~---~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 460 PDVYTYIQASGRSSRILNGVLVKGVSVIFE---EDEEIFESLKTRLL 503 (1104)
T ss_dssp ECHHHHHHHHHTTCCEETTEECCEEEEEEC---CCHHHHHHHHHHHH
T ss_pred cChhhhhcccCchhcccCCCcccceEEEEE---ecHHHHHHHHHHHh
Confidence 778999999999997654 3445544 56677777777664
No 32
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.6e-41 Score=328.21 Aligned_cols=304 Identities=19% Similarity=0.235 Sum_probs=231.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
.|.++++.+.+++++++.+|||+|||+++++++......+ .+++|++|+++|+.|++++++++. +++.+..++|
T Consensus 43 ~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g---~~vlvl~PtraLa~Q~~~~l~~~~---~~~~v~~l~G 116 (997)
T 4a4z_A 43 FQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM---TKTIYTSPIKALSNQKFRDFKETF---DDVNIGLITG 116 (997)
T ss_dssp HHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHTTC-----CCEEEECS
T ss_pred HHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHHc---CCCeEEEEeC
Confidence 4899999999999999999999999999888777665433 279999999999999999888754 3678899998
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.... ...+|+|+||+.+.+.+......+.++++||+||+|++.+ .++...+.++...+++..+++++|||
T Consensus 117 ~~~~~--------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d-~~~g~~~e~ii~~l~~~v~iIlLSAT 187 (997)
T 4a4z_A 117 DVQIN--------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND-QDRGVVWEEVIIMLPQHVKFILLSAT 187 (997)
T ss_dssp SCEEC--------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT-TCTTCCHHHHHHHSCTTCEEEEEECC
T ss_pred CCccC--------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc-cchHHHHHHHHHhcccCCCEEEEcCC
Confidence 76543 2368999999999998887777788999999999998877 56777788888888889999999999
Q ss_pred CccchHHHHHhhc---CCCeEEEeccccccccccce------E-------------------------------------
Q 018420 161 LSKEIRPVCKKFM---QDPMEIYVDDEAKLTLHGLV------Q------------------------------------- 194 (356)
Q Consensus 161 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~------~------------------------------------- 194 (356)
+++.. .+..++. ..+..+.............. .
T Consensus 188 ~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 266 (997)
T 4a4z_A 188 VPNTY-EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGR 266 (997)
T ss_dssp CTTHH-HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---------------
T ss_pred CCChH-HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccc
Confidence 87642 3333322 12222221111110000000 0
Q ss_pred -----------------------------------------------EEEEcChhHHHHHHHHHHhccCCCeEEEEecch
Q 018420 195 -----------------------------------------------HYIKLSELEKNRKLNDLLDALDFNQVVIFVKSV 227 (356)
Q Consensus 195 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~ 227 (356)
++...........+...+......++||||+++
T Consensus 267 ~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr 346 (997)
T 4a4z_A 267 GGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSK 346 (997)
T ss_dssp --------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCH
Confidence 000001112234555566666678999999999
Q ss_pred hhHHHHHHHHHhCCC---------------------------------------CeEEEecCCCHHHHHHHHHHhhcCCC
Q 018420 228 SRAAELNKLLVECNF---------------------------------------PSICIHSGMSQEERLTRYKGFKEGNK 268 (356)
Q Consensus 228 ~~~~~~~~~l~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~f~~~~~ 268 (356)
+.++.++..|...+. .+..+|+++++.+|..+++.|+.|.+
T Consensus 347 ~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~ 426 (997)
T 4a4z_A 347 KRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFI 426 (997)
T ss_dssp HHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCC
Confidence 999999999977655 46889999999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEecCCC---------ChhhhhhccccccCCCC--cceEEEEE
Q 018420 269 RILVATDLVGRGIDIERVNIVINYDMPD---------SADTYLHRVGRAGRFGT--KGLAITFV 321 (356)
Q Consensus 269 ~vlv~t~~~~~G~d~~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~~~--~~~~~~~~ 321 (356)
+|||||+++++|+|+|. ..||+.+.+. |..+|+|++||+||.|. .|.+++++
T Consensus 427 kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 427 KVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp SEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred cEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 99999999999999999 6666655544 99999999999999885 45555555
No 33
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1e-41 Score=313.76 Aligned_cols=305 Identities=16% Similarity=0.173 Sum_probs=222.5
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|.+|++.+.+++++++++|||+|||++++.++...+.... .+++|++|+++|+.||.++++++... ++..+..+.++
T Consensus 118 Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~-~~~~v~~~~~~ 194 (510)
T 2oca_A 118 QKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLF-SHAMIKKIGGG 194 (510)
T ss_dssp HHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSS-CGGGEEECGGG
T ss_pred HHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcC-CccceEEEecC
Confidence 8899999999999999999999999999887776654322 28999999999999999999887443 36688888887
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
...... .....+|+|+|++.+.. .....+.++++||+||+|++.. ..+..+...+....+++++||||
T Consensus 195 ~~~~~~----~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 195 ASKDDK----YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp CCTTGG----GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH-----HHHHHHGGGCTTCCEEEEEESCG
T ss_pred Cccccc----cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc-----ccHHHHHHhcccCcEEEEEEeCC
Confidence 665443 23446999999997753 2334567899999999998854 44667777777778999999999
Q ss_pred ccchHHHHH-hhcCCCeEEEeccccc-----cccccceEEEEEcCh---------------------hHHHHHHHHHHhc
Q 018420 162 SKEIRPVCK-KFMQDPMEIYVDDEAK-----LTLHGLVQHYIKLSE---------------------LEKNRKLNDLLDA 214 (356)
Q Consensus 162 ~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~ 214 (356)
+........ ..+..+.......... .............+. ..+...+..++..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 342 (510)
T 2oca_A 263 RDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIK 342 (510)
T ss_dssp GGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHH
Confidence 765322111 1111222111111000 000000011111110 1122233344433
Q ss_pred c---CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEc-CccccCCCCCCCCEEE
Q 018420 215 L---DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT-DLVGRGIDIERVNIVI 290 (356)
Q Consensus 215 ~---~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t-~~~~~G~d~~~~~~vi 290 (356)
. .+.++++|++ .+.+..+++.|.+.+.++..+||++++.+|.++++.|++|+.+||||| +++++|+|+|++++||
T Consensus 343 ~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi 421 (510)
T 2oca_A 343 LAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVV 421 (510)
T ss_dssp HHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEE
T ss_pred HHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEE
Confidence 3 3445566665 899999999999998899999999999999999999999999999999 9999999999999999
Q ss_pred EecCCCChhhhhhccccccCCCCcceEEEEEc
Q 018420 291 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 322 (356)
Q Consensus 291 ~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~ 322 (356)
++++|++...|.|++||+||.|+.+..+++++
T Consensus 422 ~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 422 LAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp ESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999998875555544
No 34
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.8e-39 Score=319.72 Aligned_cols=303 Identities=18% Similarity=0.166 Sum_probs=230.5
Q ss_pred CccccHhhHhc----CC--cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAIL----GM--DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~----~~--~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
.|.+|++.+.+ ++ ++++++|||+|||.+++.+++.....+. +++|++|+++|+.|+.+++++..... +++
T Consensus 607 ~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~---~vlvlvPt~~La~Q~~~~~~~~~~~~-~i~ 682 (1151)
T 2eyq_A 607 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK---QVAVLVPTTLLAQQHYDNFRDRFANW-PVR 682 (1151)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHSTTT-TCC
T ss_pred HHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCC---eEEEEechHHHHHHHHHHHHHHhhcC-CCe
Confidence 38889998876 55 8999999999999998877776655433 89999999999999999999877665 678
Q ss_pred EEEEEcCcchHHhH---HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCC
Q 018420 75 VAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 151 (356)
Q Consensus 75 v~~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 151 (356)
+..+.+........ +.+..+..+|+|+||+.+. ....+.++++||+||+|++.. .....+.....+
T Consensus 683 v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g~------~~~~~l~~l~~~ 751 (1151)
T 2eyq_A 683 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFGV------RHKERIKAMRAN 751 (1151)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSCH------HHHHHHHHHHTT
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhcCh------HHHHHHHHhcCC
Confidence 88888765544433 3345566899999998663 345678999999999998632 233334444466
Q ss_pred CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHH
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAA 231 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~ 231 (356)
.+++++||||.+...........++..+. ........+...+...........+...+ ..+++++|||++++.++
T Consensus 752 ~~vl~lSATp~p~~l~~~~~~~~~~~~i~---~~~~~r~~i~~~~~~~~~~~i~~~il~~l--~~g~qvlvf~~~v~~~~ 826 (1151)
T 2eyq_A 752 VDILTLTATPIPRTLNMAMSGMRDLSIIA---TPPARRLAVKTFVREYDSMVVREAILREI--LRGGQVYYLYNDVENIQ 826 (1151)
T ss_dssp SEEEEEESSCCCHHHHHHHTTTSEEEECC---CCCCBCBCEEEEEEECCHHHHHHHHHHHH--TTTCEEEEECCCSSCHH
T ss_pred CCEEEEcCCCChhhHHHHHhcCCCceEEe---cCCCCccccEEEEecCCHHHHHHHHHHHH--hcCCeEEEEECCHHHHH
Confidence 88999999998765555444433322211 11111122222233333222222222221 25689999999999999
Q ss_pred HHHHHHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecC-CCChhhhhhccccc
Q 018420 232 ELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM-PDSADTYLHRVGRA 308 (356)
Q Consensus 232 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~-~~s~~~~~Q~~GR~ 308 (356)
.+++.|++. +.++..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++. +.+..++.|++||+
T Consensus 827 ~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRv 906 (1151)
T 2eyq_A 827 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 906 (1151)
T ss_dssp HHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhcc
Confidence 999999987 789999999999999999999999999999999999999999999999999987 57899999999999
Q ss_pred cCCCCcceEEEEEcc
Q 018420 309 GRFGTKGLAITFVSS 323 (356)
Q Consensus 309 ~R~~~~~~~~~~~~~ 323 (356)
||.|+.|.+++++.+
T Consensus 907 gR~g~~g~~~ll~~~ 921 (1151)
T 2eyq_A 907 GRSHHQAYAWLLTPH 921 (1151)
T ss_dssp CBTTBCEEEEEEECC
T ss_pred CcCCCceEEEEEECC
Confidence 999999999988875
No 35
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2e-41 Score=331.75 Aligned_cols=313 Identities=18% Similarity=0.289 Sum_probs=232.8
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCc----eEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDI----KVA 76 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~----~v~ 76 (356)
+|.++++.+++|+++++.+|||||||+ +.++++..+... +++++|++|+++|+.|+.+.++++.... ++ .+.
T Consensus 60 iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l~~~~-~i~~~~~v~ 135 (1054)
T 1gku_B 60 IQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKYAEKA-GVGTENLIG 135 (1054)
T ss_dssp HHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHHHTTT-CCSGGGSEE
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHHHhhc-CCCccceEE
Confidence 489999999999999999999999998 666666554432 2379999999999999999999988765 66 899
Q ss_pred EEEcCcchHHhH---HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhC-----
Q 018420 77 VFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT----- 148 (356)
Q Consensus 77 ~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~----- 148 (356)
.++|+.....+. ..+.. ++|+|+||+.+..++.+ ++++++||+||||++.+ +...+..+...+
T Consensus 136 ~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~---~~~~~~~i~~~lgf~~~ 206 (1054)
T 1gku_B 136 YYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK---ASKNVDKLLHLLGFHYD 206 (1054)
T ss_dssp ECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT---STHHHHHHHHHTTEEEE
T ss_pred EEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh---ccccHHHHHHHhCcchh
Confidence 999988876642 22333 69999999999987665 56899999999999865 455555555544
Q ss_pred ------CCCCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEE
Q 018420 149 ------PHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVI 222 (356)
Q Consensus 149 ------~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 222 (356)
+...+++++|||++.. ......++.++..+.... .......+.+.+.. ..+...+..++... ++++||
T Consensus 207 ~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~-~~~~~~~i~~~~~~---~~k~~~L~~ll~~~-~~~~LV 280 (1054)
T 1gku_B 207 LKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGS-SRITVRNVEDVAVN---DESISTLSSILEKL-GTGGII 280 (1054)
T ss_dssp TTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSC-CEECCCCEEEEEES---CCCTTTTHHHHTTS-CSCEEE
T ss_pred hhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccC-cccCcCCceEEEec---hhHHHHHHHHHhhc-CCCEEE
Confidence 3457899999999876 422222222222221111 11222333343332 23344555666554 478999
Q ss_pred EecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEE----cCccccCCCCCCC-CEEEEecCC--
Q 018420 223 FVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVA----TDLVGRGIDIERV-NIVINYDMP-- 295 (356)
Q Consensus 223 f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~----t~~~~~G~d~~~~-~~vi~~~~~-- 295 (356)
||++++.++.+++.|... +.+..+||++. .+++.|++|+.+|||| |+++++|+|+|++ ++||+++.|
T Consensus 281 F~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~ 354 (1054)
T 1gku_B 281 YARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSF 354 (1054)
T ss_dssp EESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEE
T ss_pred EEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcc
Confidence 999999999999999988 89999999873 6678899999999999 8999999999996 999999999
Q ss_pred ---------------------------------------------------------------------CChhhhhhccc
Q 018420 296 ---------------------------------------------------------------------DSADTYLHRVG 306 (356)
Q Consensus 296 ---------------------------------------------------------------------~s~~~~~Q~~G 306 (356)
.+..+|+||+|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~G 434 (1054)
T 1gku_B 355 RVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSG 434 (1054)
T ss_dssp EEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHH
T ss_pred cccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhc
Confidence 68999999999
Q ss_pred cccCCCCcc--eEEEEEccCCChHHHHHHHHHhcc
Q 018420 307 RAGRFGTKG--LAITFVSSASDSDILNQVQARFEV 339 (356)
Q Consensus 307 R~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 339 (356)
|+||.|..| .+++++.. ++...++.+++.+..
T Consensus 435 RagR~g~~g~~~g~~~~~~-~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 435 RTSRLFAGGLTKGASFLLE-DDSELLSAFIERAKL 468 (1054)
T ss_dssp TTCCEETTEECCEEEEEEC-SCHHHHHHHHHHHHT
T ss_pred hhhhccCCCCceEEEEEEe-cCHHHHHHHHHHHhh
Confidence 999987775 36777664 466677777776664
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.5e-41 Score=315.08 Aligned_cols=313 Identities=22% Similarity=0.241 Sum_probs=226.2
Q ss_pred CccccHhhHhcC------CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAILG------MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
.|+++++.+.++ +++++++|||||||++++++++..+..+. ++++++|+++|+.|+.++++++.... +++
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~---qvlvlaPtr~La~Q~~~~l~~~~~~~-gi~ 447 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF---QTAFMVPTSILAIQHYRRTVESFSKF-NIH 447 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS---CEEEECSCHHHHHHHHHHHHHHHTCS-SCC
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHHHHHHHHHhhhc-Cce
Confidence 388899988774 58999999999999999999888765432 79999999999999999999988765 789
Q ss_pred EEEEEcCcchHHhH---HHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCC
Q 018420 75 VAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHD 151 (356)
Q Consensus 75 v~~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~ 151 (356)
+..++|+....... ..+.++..+|+|+||+.+.. ...+.++++||+||+|++... .+ ..+......
T Consensus 448 v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~--qr----~~l~~~~~~ 516 (780)
T 1gm5_A 448 VALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK--QR----EALMNKGKM 516 (780)
T ss_dssp EEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-----------CCCCSSSSC
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH--HH----HHHHHhCCC
Confidence 99999988765543 33456668999999987753 456788999999999987431 11 111222346
Q ss_pred CcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc-CCCeEEEEecch---
Q 018420 152 KQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSV--- 227 (356)
Q Consensus 152 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivf~~~~--- 227 (356)
++++++||||.+..... ...++.......... .....+...+. ........+..+.+.. .+++++|||+..
T Consensus 517 ~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p-~~r~~i~~~~~--~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~s 591 (780)
T 1gm5_A 517 VDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMP-PGRKEVQTMLV--PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEES 591 (780)
T ss_dssp CCEEEEESSCCCHHHHH--HHTCCSSCEEECCCC-SSCCCCEECCC--CSSTHHHHHHHHHHHTTTSCCBCCBCCCC---
T ss_pred CCEEEEeCCCCHHHHHH--HHhCCcceeeeeccC-CCCcceEEEEe--ccchHHHHHHHHHHHHhcCCcEEEEecchhhh
Confidence 78999999987653332 223332222221111 11111111111 1112222222232222 557899999965
Q ss_pred -----hhHHHHHHHHHh---CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCC-Ch
Q 018420 228 -----SRAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPD-SA 298 (356)
Q Consensus 228 -----~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~-s~ 298 (356)
..+..+++.|.+ .+..+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++++|. +.
T Consensus 592 e~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l 671 (780)
T 1gm5_A 592 DKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGL 671 (780)
T ss_dssp -----CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCT
T ss_pred hhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCH
Confidence 457788888888 477889999999999999999999999999999999999999999999999999985 78
Q ss_pred hhhhhccccccCCCCcceEEEEEccCCChHHHHHHH
Q 018420 299 DTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQ 334 (356)
Q Consensus 299 ~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~ 334 (356)
..+.|++||+||.|++|.|++++.+ .+....+.++
T Consensus 672 ~~l~Qr~GRaGR~g~~g~~ill~~~-~~~~~~~rl~ 706 (780)
T 1gm5_A 672 AQLHQLRGRVGRGGQEAYCFLVVGD-VGEEAMERLR 706 (780)
T ss_dssp THHHHHHHTSCCSSTTCEEECCCCS-CCHHHHHHHH
T ss_pred HHHHHHhcccCcCCCCCEEEEEECC-CChHHHHHHH
Confidence 8999999999999999999999873 3444334443
No 37
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4e-41 Score=306.90 Aligned_cols=292 Identities=21% Similarity=0.259 Sum_probs=213.0
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce-EEEEEc
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK-VAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~-v~~~~~ 80 (356)
|.++++.+.+++++++++|||+|||++++.++... +.+++|++|+++|+.||.++++++ +.+ +..++|
T Consensus 98 Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~-----~~~~v~~~~g 166 (472)
T 2fwr_A 98 QEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GEEYVGEFSG 166 (472)
T ss_dssp HHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG-----CGGGEEEBSS
T ss_pred HHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC-----CCcceEEECC
Confidence 88999999999999999999999999988877765 127999999999999999998884 667 888888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+... ..+|+|+|++.+....... ...+++||+||+|++.+ ..+. .+...+ ...+++++|||
T Consensus 167 ~~~~----------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~-~~~~----~~~~~~-~~~~~l~lSAT 227 (472)
T 2fwr_A 167 RIKE----------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPA-ESYV----QIAQMS-IAPFRLGLTAT 227 (472)
T ss_dssp SCBC----------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTS-TTTH----HHHHTC-CCSEEEEEESC
T ss_pred CcCC----------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCC-hHHH----HHHHhc-CCCeEEEEecC
Confidence 6543 2589999999998755421 24589999999999876 3333 234444 45779999999
Q ss_pred Cccc-------------------hHHHHHhhcCCCeEE--Eecccccc--c---------------------cccceEEE
Q 018420 161 LSKE-------------------IRPVCKKFMQDPMEI--YVDDEAKL--T---------------------LHGLVQHY 196 (356)
Q Consensus 161 ~~~~-------------------~~~~~~~~~~~~~~~--~~~~~~~~--~---------------------~~~~~~~~ 196 (356)
|... .......++..+... ........ . .......+
T Consensus 228 p~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 307 (472)
T 2fwr_A 228 FEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIV 307 (472)
T ss_dssp CCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTT
T ss_pred ccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHH
Confidence 9732 222211112211111 00000000 0 00000000
Q ss_pred ---------------------EEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHH
Q 018420 197 ---------------------IKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEE 255 (356)
Q Consensus 197 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 255 (356)
.......+...+..++....++++||||++.+.++.+++.|. +..+||+++..+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~ 382 (472)
T 2fwr_A 308 MASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREE 382 (472)
T ss_dssp TTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHH
Confidence 001122345667777777778999999999999999999884 556899999999
Q ss_pred HHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCc-ceEE--EEEccCCChH
Q 018420 256 RLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK-GLAI--TFVSSASDSD 328 (356)
Q Consensus 256 ~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~-~~~~--~~~~~~~~~~ 328 (356)
|.++++.|++|+.+|||+|+++++|+|+|++++||++++|+|...|.|++||+||.|+. +.++ .++..+..++
T Consensus 383 R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 383 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp HHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--
T ss_pred HHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999865 4444 3455443333
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.6e-40 Score=330.17 Aligned_cols=321 Identities=23% Similarity=0.322 Sum_probs=230.0
Q ss_pred CccccHhhHhc-CCcEEEEccCCCccchHhHHHhhcCcCCC--------CCCeeEEEEcCchHHHHHHHHHHHHHhccCC
Q 018420 1 MQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPN--------PGQVTALVLCHTRELAYQICHEFERFSTYLP 71 (356)
Q Consensus 1 ~Q~~~~~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~--------~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~ 71 (356)
+|.++++.++. ++|++++||||||||+++.++++..+.+. ..+.+++|++|+++|+.|..+.+++.....
T Consensus 83 iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~- 161 (1724)
T 4f92_B 83 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATY- 161 (1724)
T ss_dssp HHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhC-
Confidence 58999998775 78999999999999999999988765431 234589999999999999999999887776
Q ss_pred CceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCc--ccCCccEEEEeccccccccccchhHHHHH-----
Q 018420 72 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDL--SLKNVRHFILDECDKMLESLDMRRDVQEI----- 144 (356)
Q Consensus 72 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~--~~~~~~~viiDE~H~~~~~~~~~~~~~~~----- 144 (356)
++.|..++|+....... . ..++|+||||+.+-.+.++... .++.+++||+||+|.+.+ +....+..+
T Consensus 162 gi~V~~~tGd~~~~~~~--~--~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d--~RG~~lE~~l~rl~ 235 (1724)
T 4f92_B 162 GITVAELTGDHQLCKEE--I--SATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD--DRGPVLEALVARAI 235 (1724)
T ss_dssp TCCEEECCSSCSSCCTT--G--GGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS--TTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCccc--c--CCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC--ccHHHHHHHHHHHH
Confidence 89999999987654321 1 2369999999998666655432 367899999999998754 333333222
Q ss_pred --HhhCCCCCcEEEEEecCccchHHHHHhhcCCCe--EEEeccccccccccceEEEEEcC---hhHHHH----HHHHHH-
Q 018420 145 --FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPM--EIYVDDEAKLTLHGLVQHYIKLS---ELEKNR----KLNDLL- 212 (356)
Q Consensus 145 --~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~- 212 (356)
....++..|+|++|||+++ ..++..++...+. ...+... ..+-.+.+.+.... ...... .+...+
T Consensus 236 ~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~--~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 312 (1724)
T 4f92_B 236 RNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNS--FRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIM 312 (1724)
T ss_dssp HHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGG--GCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCC--CccCccEEEEeccCCcchhhhhHHHHHHHHHHHH
Confidence 2345677899999999985 4555555443321 1111111 11112222222221 111122 222222
Q ss_pred hccCCCeEEEEecchhhHHHHHHHHHhC-------------------------------------CCCeEEEecCCCHHH
Q 018420 213 DALDFNQVVIFVKSVSRAAELNKLLVEC-------------------------------------NFPSICIHSGMSQEE 255 (356)
Q Consensus 213 ~~~~~~~~ivf~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~ 255 (356)
+...++++||||+++..++.+++.|.+. ...+..+||++++.+
T Consensus 313 ~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~ 392 (1724)
T 4f92_B 313 EHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVD 392 (1724)
T ss_dssp TCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHH
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHH
Confidence 2335678999999999999888877541 234778999999999
Q ss_pred HHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEE----ecC------CCChhhhhhccccccCCCC--cceEEEEEcc
Q 018420 256 RLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----YDM------PDSADTYLHRVGRAGRFGT--KGLAITFVSS 323 (356)
Q Consensus 256 ~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~~~--~~~~~~~~~~ 323 (356)
|..+.+.|++|.++||+||++++.|+|+|...+||. +++ |.+..+|.||+||+||.|. .|.++++...
T Consensus 393 R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 393 RTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 999999999999999999999999999999888874 332 4589999999999999765 5778888776
Q ss_pred CCChHHHH
Q 018420 324 ASDSDILN 331 (356)
Q Consensus 324 ~~~~~~~~ 331 (356)
.+...+..
T Consensus 473 ~~~~~~~~ 480 (1724)
T 4f92_B 473 GELQYYLS 480 (1724)
T ss_dssp TTCCHHHH
T ss_pred hhHHHHHH
Confidence 55544433
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.9e-39 Score=323.55 Aligned_cols=315 Identities=17% Similarity=0.193 Sum_probs=228.5
Q ss_pred CccccHhhHhc-CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+|.++++.+.. +++++++||||||||+++.++++..+..+++. +++|++|+++|+.|.++++++..+...+.++..+.
T Consensus 930 iQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~-kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~lt 1008 (1724)
T 4f92_B 930 IQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEG-RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLT 1008 (1724)
T ss_dssp HHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTC-CEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECC
T ss_pred HHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCC-EEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEE
Confidence 59999999975 67899999999999999999999887655444 79999999999999999998655443488999999
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCC--cccCCccEEEEeccccccccccchhHH-------HHHHhhCCC
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLESLDMRRDV-------QEIFKMTPH 150 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~viiDE~H~~~~~~~~~~~~-------~~~~~~~~~ 150 (356)
|+...+. +.... ++|+||||+.+..++++.. ..++++++||+||+|.+.+. ....+ ..+....+.
T Consensus 1009 Gd~~~~~--~~~~~--~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~--rg~~le~il~rl~~i~~~~~~ 1082 (1724)
T 4f92_B 1009 GETSTDL--KLLGK--GNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE--NGPVLEVICSRMRYISSQIER 1082 (1724)
T ss_dssp SCHHHHH--HHHHH--CSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST--THHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCcch--hhcCC--CCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC--CCccHHHHHHHHHHHHhhcCC
Confidence 8755332 22222 4999999999987776543 33678999999999988652 22222 223345567
Q ss_pred CCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChh---H----HHHHH-HHHHhccCCCeEEE
Q 018420 151 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEL---E----KNRKL-NDLLDALDFNQVVI 222 (356)
Q Consensus 151 ~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~-~~~~~~~~~~~~iv 222 (356)
+.|+|++|||+++ ..++..++...+...+..... ..+..+...+...... . ....+ ..+.....++++||
T Consensus 1083 ~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~-~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lV 1160 (1724)
T 4f92_B 1083 PIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPN-VRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIV 1160 (1724)
T ss_dssp CCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGG-GCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEE
T ss_pred CceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCC-CCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeee
Confidence 8899999999985 456666664443322221111 1111222222221111 1 11112 22233346789999
Q ss_pred EecchhhHHHHHHHHHhC----------------------------------CCCeEEEecCCCHHHHHHHHHHhhcCCC
Q 018420 223 FVKSVSRAAELNKLLVEC----------------------------------NFPSICIHSGMSQEERLTRYKGFKEGNK 268 (356)
Q Consensus 223 f~~~~~~~~~~~~~l~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 268 (356)
||+++..++..+..|... ...+..+|+++++.+|..+++.|++|.+
T Consensus 1161 F~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i 1240 (1724)
T 4f92_B 1161 FVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAI 1240 (1724)
T ss_dssp EESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSB
T ss_pred eCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCC
Confidence 999999999887766431 2357889999999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEE----ec------CCCChhhhhhccccccCCCC--cceEEEEEccC
Q 018420 269 RILVATDLVGRGIDIERVNIVIN----YD------MPDSADTYLHRVGRAGRFGT--KGLAITFVSSA 324 (356)
Q Consensus 269 ~vlv~t~~~~~G~d~~~~~~vi~----~~------~~~s~~~~~Q~~GR~~R~~~--~~~~~~~~~~~ 324 (356)
+|||||+++++|+|+|...+||. ++ .|.+..+|.||+||+||.|. .|.++++....
T Consensus 1241 ~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1241 QVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp CEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred eEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 99999999999999998887773 22 35689999999999999987 57778777743
No 40
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.9e-41 Score=304.02 Aligned_cols=299 Identities=17% Similarity=0.168 Sum_probs=195.5
Q ss_pred hHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHh
Q 018420 8 QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH 87 (356)
Q Consensus 8 ~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 87 (356)
.+.+++++++.+|||||||++++++++..+..+. .+++|++|+++|+.|+.+.++.+ .+....+....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~--~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~~~--- 71 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR--LRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAFSA--- 71 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCCCC---
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC--CeEEEEcchHHHHHHHHHHHhcC-------CeEEeccccee---
Confidence 4678999999999999999999888887554332 37999999999999998877532 33322221000
Q ss_pred HHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhC-CCCCcEEEEEecCccchH
Q 018420 88 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMMFSATLSKEIR 166 (356)
Q Consensus 88 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~~i~~SaT~~~~~~ 166 (356)
......-+-..+...+...+ .....+.++++||+||+|++. ..+...+..+.... ....+++++|||+++...
T Consensus 72 ---v~Tp~~l~~~l~~~~l~~~~-~~~~~~~~l~~vViDEah~~~--~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~ 145 (440)
T 1yks_A 72 ---HGSGREVIDAMCHATLTYRM-LEPTRVVNWEVIIMDEAHFLD--PASIAARGWAAHRARANESATILMTATPPGTSD 145 (440)
T ss_dssp ---CCCSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEETTTTCCS--HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCC
T ss_pred ---ccCCccceeeecccchhHhh-hCcccccCccEEEEECccccC--cchHHHHHHHHHHhccCCceEEEEeCCCCchhh
Confidence 11111112222333332222 223457889999999999982 22222222111111 356899999999987643
Q ss_pred HHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEE
Q 018420 167 PVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 246 (356)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~ 246 (356)
.+... ..+....... .+.......+..+.+ .+++++|||++++.++.+++.|++.+.++..
T Consensus 146 ~~~~~--~~~~~~~~~~---------------~~~~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~ 206 (440)
T 1yks_A 146 EFPHS--NGEIEDVQTD---------------IPSEPWNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVV 206 (440)
T ss_dssp SSCCC--SSCEEEEECC---------------CCSSCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred hhhhc--CCCeeEeeec---------------cChHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 22211 1111111000 000000111111222 2579999999999999999999999999999
Q ss_pred EecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEE-------------------ecCCCChhhhhhcccc
Q 018420 247 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN-------------------YDMPDSADTYLHRVGR 307 (356)
Q Consensus 247 ~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~-------------------~~~~~s~~~~~Q~~GR 307 (356)
+|| .+|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|.||+||
T Consensus 207 lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR 281 (440)
T 1yks_A 207 LNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGR 281 (440)
T ss_dssp CCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTT
T ss_pred ecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccc
Confidence 999 4677889999999999999999999999999 999986 7889999999999999
Q ss_pred ccCC-CCcceEEEEE--ccCCChHHHHHHHHHhcccCcccCccc
Q 018420 308 AGRF-GTKGLAITFV--SSASDSDILNQVQARFEVDIKELPEQI 348 (356)
Q Consensus 308 ~~R~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (356)
+||. +++|.+++++ ....+...++.+++.+.....+++...
T Consensus 282 ~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~ 325 (440)
T 1yks_A 282 IGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGM 325 (440)
T ss_dssp SSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGC
T ss_pred cCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccccc
Confidence 9997 6899999997 245666778888887766656665443
No 41
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4e-38 Score=291.71 Aligned_cols=315 Identities=18% Similarity=0.207 Sum_probs=232.8
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|..+++.+++|+ +..++||+|||++|.++++.....++ .++|++|+++|+.|.++++..+...+ ++++..+.|
T Consensus 87 VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~---~vlVltptreLA~qd~e~~~~l~~~l-gl~v~~i~g 160 (844)
T 1tf5_A 87 VQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGK---GVHVVTVNEYLASRDAEQMGKIFEFL-GLTVGLNLN 160 (844)
T ss_dssp HHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCT
T ss_pred HHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeC
Confidence 4889999999998 99999999999999999884433222 69999999999999999999988877 899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHH-HHHHhcC------CcccCCccEEEEeccccccccc---------------cch
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLESL---------------DMR 138 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~viiDE~H~~~~~~---------------~~~ 138 (356)
+.+........ + ++|+|+||..| +.++... ...++.+.++|+||||.+.-+. ++.
T Consensus 161 g~~~~~r~~~~--~-~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~ 237 (844)
T 1tf5_A 161 SMSKDEKREAY--A-ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLY 237 (844)
T ss_dssp TSCHHHHHHHH--H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHH
T ss_pred CCCHHHHHHhc--C-CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhHH
Confidence 98765443332 2 59999999999 6655543 3456889999999999987212 245
Q ss_pred hHHHHHHhhCCC---------CCcEE-----------------EEEecCccchHHH---H--HhhcC-CCeEEE------
Q 018420 139 RDVQEIFKMTPH---------DKQVM-----------------MFSATLSKEIRPV---C--KKFMQ-DPMEIY------ 180 (356)
Q Consensus 139 ~~~~~~~~~~~~---------~~~~i-----------------~~SaT~~~~~~~~---~--~~~~~-~~~~~~------ 180 (356)
..+..+...+++ ..++. ++|||.+.-.... + ..++. +..++.
T Consensus 238 ~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ 317 (844)
T 1tf5_A 238 VQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVV 317 (844)
T ss_dssp HHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEE
T ss_pred HHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeE
Confidence 566777776652 45565 6788755321111 1 11111 111110
Q ss_pred -ec---------------------------------------------------------------------------cc
Q 018420 181 -VD---------------------------------------------------------------------------DE 184 (356)
Q Consensus 181 -~~---------------------------------------------------------------------------~~ 184 (356)
++ +.
T Consensus 318 ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPt 397 (844)
T 1tf5_A 318 IVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPT 397 (844)
T ss_dssp EBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECCC
T ss_pred EeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEecC
Confidence 00 00
Q ss_pred cccccccceEEEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHH
Q 018420 185 AKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKG 262 (356)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (356)
...........++......+...+...+... .+.++||||++++.++.++..|...|+++..+||++.+.++..+...
T Consensus 398 n~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~a 477 (844)
T 1tf5_A 398 NRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEA 477 (844)
T ss_dssp SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTT
T ss_pred CCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHc
Confidence 0000000011234456667777777766542 45789999999999999999999999999999999887777655555
Q ss_pred hhcCCCcEEEEcCccccCCCCC--------CCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCC
Q 018420 263 FKEGNKRILVATDLVGRGIDIE--------RVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 263 f~~~~~~vlv~t~~~~~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 326 (356)
++.| .|+|||+++++|+|++ +..+||.++.|.|...|.||+||+||.|.+|.++.|++..++
T Consensus 478 g~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 478 GQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred CCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 5544 6999999999999999 778999999999999999999999999999999999987654
No 42
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=1.9e-39 Score=300.72 Aligned_cols=304 Identities=16% Similarity=0.127 Sum_probs=217.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|+++++.+.+++++++.+|||||||++|+++++..+... +.+++|++|+++|+.|+.+.++ +..+. +.+
T Consensus 175 iq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi~~~l~-------~~~v~-~~~ 244 (618)
T 2whx_A 175 DYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEMEEALR-------GLPIR-YQT 244 (618)
T ss_dssp CCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT-------TSCEE-ECC
T ss_pred ccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHHHHHhc-------CCcee-Eec
Confidence 3566799999999999999999999999988887665432 2379999999999999988765 23343 222
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCC-CCCcEEEEEe
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSA 159 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~~~~i~~Sa 159 (356)
... . ........+.++|.+.+...+... ..+.++++||+||||++ + .++...+..+....+ ...|++++||
T Consensus 245 ~~l-~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~-~~~~~~~~~i~~~l~~~~~q~il~SA 316 (618)
T 2whx_A 245 PAV-K----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-D-PCSVAARGYISTRVEMGEAAAIFMTA 316 (618)
T ss_dssp TTS-S----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-S-HHHHHHHHHHHHHHHHTSCEEEEECS
T ss_pred ccc-e----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-C-ccHHHHHHHHHHHhcccCccEEEEEC
Confidence 110 0 112233467788888887655443 35788999999999998 2 344445555544443 5789999999
Q ss_pred cCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
|++.....+.. .++..+....... ... ....+..+.+ ..+++||||++++.++.+++.|.+
T Consensus 317 T~~~~~~~~~~---~~~~~~~v~~~~~--~~~------------~~~ll~~l~~--~~~~~LVF~~s~~~a~~l~~~L~~ 377 (618)
T 2whx_A 317 TPPGSTDPFPQ---SNSPIEDIEREIP--ERS------------WNTGFDWITD--YQGKTVWFVPSIKAGNDIANCLRK 377 (618)
T ss_dssp SCTTCCCSSCC---CSSCEEEEECCCC--SSC------------CSSSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCchhhhhhhc---cCCceeeecccCC--HHH------------HHHHHHHHHh--CCCCEEEEECChhHHHHHHHHHHH
Confidence 99876432222 1222222211100 000 0011111222 257899999999999999999999
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEE--------------------EEecCCCChh
Q 018420 240 CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIV--------------------INYDMPDSAD 299 (356)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~v--------------------i~~~~~~s~~ 299 (356)
.+..+..+|+. +|.++++.|++|+.+|||||+++++|+|+| +++| ++++.|.+..
T Consensus 378 ~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~ 452 (618)
T 2whx_A 378 SGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPA 452 (618)
T ss_dssp TTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHH
T ss_pred cCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHH
Confidence 99999999984 677899999999999999999999999997 8888 6667789999
Q ss_pred hhhhccccccCCCC-cceEEEEEc--cCCChHHHHHHHHHhcccCcccCc
Q 018420 300 TYLHRVGRAGRFGT-KGLAITFVS--SASDSDILNQVQARFEVDIKELPE 346 (356)
Q Consensus 300 ~~~Q~~GR~~R~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 346 (356)
+|+||+||+||.|. .|.+++++. ...+...++.+++.+.....++++
T Consensus 453 ~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 453 SAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred HHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 99999999999965 888888886 245556677777766554444443
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=7.1e-39 Score=288.67 Aligned_cols=278 Identities=16% Similarity=0.134 Sum_probs=198.3
Q ss_pred cccHhhHhcCCcE-EEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 3 HECIPQAILGMDV-ICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 3 ~~~~~~~~~~~~~-li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
+++++.+++++++ ++.+|||||||++++++++...... +.+++|++|+++|+.|+.+.+. +..+......
T Consensus 9 q~~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~ 79 (451)
T 2jlq_A 9 YEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPA 79 (451)
T ss_dssp CCCCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTT
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc-------Cceeeeeecc
Confidence 3588999988776 8999999999999888877654332 2379999999999999988764 3344332221
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHH-hhCCCCCcEEEEEec
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIF-KMTPHDKQVMMFSAT 160 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~-~~~~~~~~~i~~SaT 160 (356)
... .......+.++|++.+...+... ..+.++++||+||+|++.. ........+. ....++.+++++|||
T Consensus 80 ~~~------~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~~--~~~~~~~~~~~~~~~~~~~~i~~SAT 150 (451)
T 2jlq_A 80 VKS------DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTDP--CSVAARGYISTRVEMGEAAAIFMTAT 150 (451)
T ss_dssp CSC------CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCCSH--HHHHHHHHHHHHHHTTSCEEEEECSS
T ss_pred ccc------cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccCCc--chHHHHHHHHHhhcCCCceEEEEccC
Confidence 111 11233578899999987766544 4578899999999997721 2111111111 123456899999999
Q ss_pred CccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhC
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVEC 240 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~ 240 (356)
++...... +..++..+....... ... +. . +...+.. ..+++||||++++.++.+++.|.+.
T Consensus 151 ~~~~~~~~---~~~~~~~~~~~~~~p--~~~----~~-----~----~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~ 211 (451)
T 2jlq_A 151 PPGSTDPF---PQSNSPIEDIEREIP--ERS----WN-----T----GFDWITD-YQGKTVWFVPSIKAGNDIANCLRKS 211 (451)
T ss_dssp CTTCCCSS---CCCSSCEEEEECCCC--SSC----CS-----S----SCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTT
T ss_pred CCccchhh---hcCCCceEecCccCC--chh----hH-----H----HHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHc
Confidence 98753222 223333332221100 000 00 0 0111222 2468999999999999999999999
Q ss_pred CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEec--------------------CCCChhh
Q 018420 241 NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYD--------------------MPDSADT 300 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~--------------------~~~s~~~ 300 (356)
+..+..+|+++. .++++.|++|+.+|||||+++++|+|+|+ ++||+++ .|.|..+
T Consensus 212 g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~ 286 (451)
T 2jlq_A 212 GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPAS 286 (451)
T ss_dssp TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHH
T ss_pred CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHH
Confidence 999999998754 56788999999999999999999999999 9999988 8999999
Q ss_pred hhhccccccCCCC-cceEEEEEc
Q 018420 301 YLHRVGRAGRFGT-KGLAITFVS 322 (356)
Q Consensus 301 ~~Q~~GR~~R~~~-~~~~~~~~~ 322 (356)
|.||+||+||.|+ +|.+++++.
T Consensus 287 y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 287 AAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECS
T ss_pred HHHhccccCCCCCCCccEEEEeC
Confidence 9999999999998 778877764
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3e-38 Score=290.08 Aligned_cols=272 Identities=19% Similarity=0.214 Sum_probs=202.5
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|+++++.+.+++++++.+|||||||.++.++++.. +.+++|++|+++|+.|+++++.+.. +..+....|+
T Consensus 222 q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~----g~~vg~~vG~ 291 (666)
T 3o8b_A 222 NSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH----GIDPNIRTGV 291 (666)
T ss_dssp CCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH----SCCCEEECSS
T ss_pred HHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh----CCCeeEEECc
Confidence 55666666678899999999999999998888763 2279999999999999999887665 4455666665
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCc--EEEEEe
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQ--VMMFSA 159 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~--~i~~Sa 159 (356)
.. .....+|+|+||+.|+ .+....++++++||+||+|.+. .++...+..+....+...+ ++++||
T Consensus 292 ~~--------~~~~~~IlV~TPGrLl---~~~~l~l~~l~~lVlDEAH~l~--~~~~~~l~~Il~~l~~~~~~llil~SA 358 (666)
T 3o8b_A 292 RT--------ITTGAPVTYSTYGKFL---ADGGCSGGAYDIIICDECHSTD--STTILGIGTVLDQAETAGARLVVLATA 358 (666)
T ss_dssp CE--------ECCCCSEEEEEHHHHH---HTTSCCTTSCSEEEETTTTCCS--HHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred Ee--------ccCCCCEEEECcHHHH---hCCCcccCcccEEEEccchhcC--ccHHHHHHHHHHhhhhcCCceEEEECC
Confidence 43 2334699999999984 4566677889999999998773 4566667777777765555 788899
Q ss_pred cCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE 239 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~ 239 (356)
|++.... ...+......... ......+..... +.....+++||||++++.++.+++.|++
T Consensus 359 T~~~~i~------~~~p~i~~v~~~~----~~~i~~~~~~~~----------l~~~~~~~vLVFv~Tr~~ae~la~~L~~ 418 (666)
T 3o8b_A 359 TPPGSVT------VPHPNIEEVALSN----TGEIPFYGKAIP----------IEAIRGGRHLIFCHSKKKCDELAAKLSG 418 (666)
T ss_dssp SCTTCCC------CCCTTEEEEECBS----CSSEEETTEEEC----------GGGSSSSEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCcccc------cCCcceEEEeecc----cchhHHHHhhhh----------hhhccCCcEEEEeCCHHHHHHHHHHHHh
Confidence 9987421 1122111111000 000010000000 1233568999999999999999999999
Q ss_pred CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEE----------ec-----------CCCCh
Q 018420 240 CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN----------YD-----------MPDSA 298 (356)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~----------~~-----------~~~s~ 298 (356)
.+..+..+||++++.+ |.++..+|||||+++++|+|+| +++||+ |+ .|.+.
T Consensus 419 ~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~ 490 (666)
T 3o8b_A 419 LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDA 490 (666)
T ss_dssp TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBH
T ss_pred CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCH
Confidence 9999999999999875 4556679999999999999997 999884 55 78999
Q ss_pred hhhhhccccccCCCCcceEEEEEccCCC
Q 018420 299 DTYLHRVGRAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 299 ~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 326 (356)
.+|+||+||+|| +++|. +.++.+.+.
T Consensus 491 ~syiQRiGRtGR-g~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 491 VSRSQRRGRTGR-GRRGI-YRFVTPGER 516 (666)
T ss_dssp HHHHHHHTTBCS-SSCEE-EEESCCCCB
T ss_pred HHHHHHhccCCC-CCCCE-EEEEecchh
Confidence 999999999999 88998 888776543
No 45
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=8.2e-39 Score=288.69 Aligned_cols=282 Identities=16% Similarity=0.152 Sum_probs=191.3
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|.+....+.+++++++++|||||||++|+++++..+... +.+++|++|+++|+.|+.+.++ +..+....+.
T Consensus 11 ~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~ 81 (459)
T 2z83_A 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSA 81 (459)
T ss_dssp ----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT-------TSCEEECC--
T ss_pred HHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc-------CceEeEEecc
Confidence 334445566789999999999999999988888765432 2379999999999999988775 3333322221
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
... .......+.++|...+...+... ..++++++||+||||++.........+..... .....+++++|||+
T Consensus 82 ~~~------~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-~~~~~~~il~SAT~ 153 (459)
T 2z83_A 82 VQR------EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-ELGEAAAIFMTATP 153 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSSC
T ss_pred ccc------CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-ccCCccEEEEEcCC
Confidence 110 01233467788888877655443 45789999999999985221111111111111 12578999999999
Q ss_pred ccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCC
Q 018420 162 SKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECN 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~ 241 (356)
+.....+... ..|......... .... ... ...+.. ..+++||||++++.++.+++.|...+
T Consensus 154 ~~~~~~~~~~--~~pi~~~~~~~~---~~~~---------~~~----~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g 214 (459)
T 2z83_A 154 PGTTDPFPDS--NAPIHDLQDEIP---DRAW---------SSG----YEWITE-YAGKTVWFVASVKMGNEIAMCLQRAG 214 (459)
T ss_dssp TTCCCSSCCC--SSCEEEEECCCC---SSCC---------SSC----CHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT
T ss_pred CcchhhhccC--CCCeEEecccCC---cchh---------HHH----HHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcC
Confidence 8764322111 223222111000 0000 000 111222 25799999999999999999999999
Q ss_pred CCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEE--------------------ecCCCChhhh
Q 018420 242 FPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN--------------------YDMPDSADTY 301 (356)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~--------------------~~~~~s~~~~ 301 (356)
..+..+|+. +|.++++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|
T Consensus 215 ~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~ 289 (459)
T 2z83_A 215 KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASA 289 (459)
T ss_dssp CCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHH
T ss_pred CcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHH
Confidence 999999985 6777889999999999999999999999999 99998 5699999999
Q ss_pred hhccccccCCCC-cceEEEEEccC
Q 018420 302 LHRVGRAGRFGT-KGLAITFVSSA 324 (356)
Q Consensus 302 ~Q~~GR~~R~~~-~~~~~~~~~~~ 324 (356)
+||+||+||.|. +|.+++++...
T Consensus 290 ~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 290 AQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHhccccCCCCCCCCeEEEEEccc
Confidence 999999999987 89999998864
No 46
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.6e-37 Score=284.61 Aligned_cols=315 Identities=17% Similarity=0.200 Sum_probs=217.1
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|..+++.++.|+ +..++||+|||+++.++++.....+. .+++++||++|+.|.++.+..+...+ ++++..+.|
T Consensus 78 VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~---~vlVltPTreLA~Q~~e~~~~l~~~l-gl~v~~i~G 151 (853)
T 2fsf_A 78 VQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGK---GVHVVTVNDYLAQRDAENNRPLFEFL-GLTVGINLP 151 (853)
T ss_dssp HHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSS---CCEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCT
T ss_pred HHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCC---cEEEEcCCHHHHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence 4888999999987 99999999999999999885443332 68999999999999999999998887 899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHH-HHHHhcCC------cccCCccEEEEeccccccccc---------------cch
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLKNVRHFILDECDKMLESL---------------DMR 138 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~------~~~~~~~~viiDE~H~~~~~~---------------~~~ 138 (356)
+.+...... ..+ ++|+|+||..| +.+++... ...+++.++|+||+|.+.... ++.
T Consensus 152 G~~~~~r~~--~~~-~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y 228 (853)
T 2fsf_A 152 GMPAPAKRE--AYA-ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMY 228 (853)
T ss_dssp TCCHHHHHH--HHH-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--------
T ss_pred CCCHHHHHH--hcC-CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHH
Confidence 987653332 222 59999999999 67776542 456889999999999987322 233
Q ss_pred hHHHHHHhhCCC--------------------CCcEE------------------------EEEecCccchHHH---H--
Q 018420 139 RDVQEIFKMTPH--------------------DKQVM------------------------MFSATLSKEIRPV---C-- 169 (356)
Q Consensus 139 ~~~~~~~~~~~~--------------------~~~~i------------------------~~SaT~~~~~~~~---~-- 169 (356)
..+..+...++. ..++. ++|||.+.-.... +
T Consensus 229 ~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A 308 (853)
T 2fsf_A 229 KRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRA 308 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHH
Confidence 444444444432 23332 6777754211110 0
Q ss_pred HhhcC--------C-------------------------C----eEEEeccc----------------------------
Q 018420 170 KKFMQ--------D-------------------------P----MEIYVDDE---------------------------- 184 (356)
Q Consensus 170 ~~~~~--------~-------------------------~----~~~~~~~~---------------------------- 184 (356)
..++. + + ..+.+...
T Consensus 309 ~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~t 388 (853)
T 2fsf_A 309 HALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADT 388 (853)
T ss_dssp ------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCC
T ss_pred HHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchh
Confidence 00000 0 0 00000000
Q ss_pred ------------------cccccccceEEEEEcChhHHHHHHHHHHhc--cCCCeEEEEecchhhHHHHHHHHHhCCCCe
Q 018420 185 ------------------AKLTLHGLVQHYIKLSELEKNRKLNDLLDA--LDFNQVVIFVKSVSRAAELNKLLVECNFPS 244 (356)
Q Consensus 185 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~ 244 (356)
.....+.....++......+...+...+.. ..+.++||||++++.++.+++.|...|+++
T Consensus 389 e~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~ 468 (853)
T 2fsf_A 389 EAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKH 468 (853)
T ss_dssp CHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCE
Confidence 000000111224455667788887777754 256789999999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCC-------------------------------------C
Q 018420 245 ICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERV-------------------------------------N 287 (356)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~-------------------------------------~ 287 (356)
..+|+++.+.++..+...|+.| .|+|||+++++|+|++.. .
T Consensus 469 ~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl 546 (853)
T 2fsf_A 469 NVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGL 546 (853)
T ss_dssp EECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred EEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCc
Confidence 9999998888887777788877 699999999999999874 5
Q ss_pred EEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCC
Q 018420 288 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 288 ~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 326 (356)
+||.++.|.|...|.|++||+||.|.+|.+..|++..++
T Consensus 547 ~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 547 HIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred EEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 899999999999999999999999999999999986543
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.7e-38 Score=294.64 Aligned_cols=300 Identities=18% Similarity=0.204 Sum_probs=203.3
Q ss_pred ccHhhHh------cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEE
Q 018420 4 ECIPQAI------LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 77 (356)
Q Consensus 4 ~~~~~~~------~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~ 77 (356)
++++.++ +++++++.+|||||||++|+++++..+.... .+++|++|+++|+.|+.+.++.+ + +..
T Consensus 227 ~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~--~~~lilaPTr~La~Q~~~~l~~~-----~--i~~ 297 (673)
T 2wv9_A 227 EPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR--LRTAVLAPTRVVAAEMAEALRGL-----P--VRY 297 (673)
T ss_dssp ---CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTTTS-----C--CEE
T ss_pred cchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEccHHHHHHHHHHHHhcC-----C--eee
Confidence 8888877 8999999999999999999888886644322 37999999999999998877643 2 221
Q ss_pred EEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhC-CCCCcEEE
Q 018420 78 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-PHDKQVMM 156 (356)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 156 (356)
..+... .......-+-+.+...+...+... ..+.++++||+||+|++.. .....+..+.... ....++++
T Consensus 298 ~~~~l~------~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~~~--~~~~~~~~l~~~~~~~~~~vl~ 368 (673)
T 2wv9_A 298 LTPAVQ------REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFTDP--ASIAARGYIATRVEAGEAAAIF 368 (673)
T ss_dssp CCC---------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCCCH--HHHHHHHHHHHHHHTTSCEEEE
T ss_pred eccccc------ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcccCc--cHHHHHHHHHHhccccCCcEEE
Confidence 111000 011222244555656665444433 5678999999999999821 1112222222222 25689999
Q ss_pred EEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHH
Q 018420 157 FSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKL 236 (356)
Q Consensus 157 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~ 236 (356)
+|||++..+..+... ..|....... .........+..+.+ ..+++||||++++.++.+++.
T Consensus 369 ~SAT~~~~i~~~~~~--~~~i~~v~~~---------------~~~~~~~~~l~~l~~--~~~~~lVF~~s~~~~e~la~~ 429 (673)
T 2wv9_A 369 MTATPPGTSDPFPDT--NSPVHDVSSE---------------IPDRAWSSGFEWITD--YAGKTVWFVASVKMSNEIAQC 429 (673)
T ss_dssp ECSSCTTCCCSSCCC--SSCEEEEECC---------------CCSSCCSSCCHHHHS--CCSCEEEECSSHHHHHHHHHH
T ss_pred EcCCCChhhhhhccc--CCceEEEeee---------------cCHHHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHHH
Confidence 999998764322111 1111111100 000000111112222 458999999999999999999
Q ss_pred HHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEE--------------------ecCCC
Q 018420 237 LVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVIN--------------------YDMPD 296 (356)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~--------------------~~~~~ 296 (356)
|++.+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.
T Consensus 430 L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~ 504 (673)
T 2wv9_A 430 LQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAI 504 (673)
T ss_dssp HHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEEC
T ss_pred HHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCC
Confidence 99999999999993 788899999999999999999999999999 999997 45788
Q ss_pred ChhhhhhccccccCC-CCcceEEEEEc--cCCChHHHHHHHHHhcccCcccC
Q 018420 297 SADTYLHRVGRAGRF-GTKGLAITFVS--SASDSDILNQVQARFEVDIKELP 345 (356)
Q Consensus 297 s~~~~~Q~~GR~~R~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 345 (356)
+..+|.||+||+||. ++.|.+++++. ...+...++.+++.+.....+++
T Consensus 505 s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~ 556 (673)
T 2wv9_A 505 TSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLP 556 (673)
T ss_dssp CHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBT
T ss_pred CHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCC
Confidence 999999999999998 78899999863 34566666777665543333333
No 48
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.3e-37 Score=277.06 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=184.2
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL 90 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (356)
+++++++++|||||||++++++++....... .+++|++|+++|+.|+.+.++ +..+....+... .
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g--~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~------~ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKR--LRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQ------S 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHTT-------TSCEEEC------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCcc------c
Confidence 4789999999999999999887774433222 279999999999999887664 445555444311 1
Q ss_pred HhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhh-CCCCCcEEEEEecCccchHHHH
Q 018420 91 LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKM-TPHDKQVMMFSATLSKEIRPVC 169 (356)
Q Consensus 91 ~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~-~~~~~~~i~~SaT~~~~~~~~~ 169 (356)
.......+.+.|...+...+.. ...+.++++||+||+|++.. .+......+... .+..++++++||||++....+.
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~--~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDP--ASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCSH--HHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCCc--cHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc
Confidence 2222346777888888665554 45578999999999999732 222222222222 2457899999999987532211
Q ss_pred HhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEec
Q 018420 170 KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHS 249 (356)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (356)
.. ..|....... .+.. ....+...+.. ..++++|||++++.++.+++.|.+.+..+..+||
T Consensus 143 ~~--~~~i~~~~~~---------------~~~~-~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg 203 (431)
T 2v6i_A 143 PS--NSPIIDEETR---------------IPDK-AWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNR 203 (431)
T ss_dssp CC--SSCCEEEECC---------------CCSS-CCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEEST
T ss_pred CC--CCceeecccc---------------CCHH-HHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 11 1111111000 0000 00111122222 2478999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCE-----------------EEEecCCCChhhhhhccccccCCC
Q 018420 250 GMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNI-----------------VINYDMPDSADTYLHRVGRAGRFG 312 (356)
Q Consensus 250 ~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~~ 312 (356)
+ +|.++++.|++|+.+|||||+++++|+|+| +.+ ++.++.|.+..+|.||+||+||.|
T Consensus 204 ~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 278 (431)
T 2v6i_A 204 K----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP 278 (431)
T ss_dssp T----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred c----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCC
Confidence 6 577889999999999999999999999999 655 566788899999999999999998
Q ss_pred CcceEEEEEc
Q 018420 313 TKGLAITFVS 322 (356)
Q Consensus 313 ~~~~~~~~~~ 322 (356)
..+.+++++.
T Consensus 279 ~~~~~~~~~~ 288 (431)
T 2v6i_A 279 EKLGDIYAYS 288 (431)
T ss_dssp TCCCCEEEEC
T ss_pred CCCCeEEEEc
Confidence 6554444444
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.1e-36 Score=279.85 Aligned_cols=315 Identities=21% Similarity=0.234 Sum_probs=236.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|..+++.+.+|+ +..++||+|||+++.++++.....+. .++|++|+++|+.|.++++..+...+ +++++.+.|
T Consensus 115 VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~---~v~VvTpTreLA~Qdae~m~~l~~~l-GLsv~~i~g 188 (922)
T 1nkt_A 115 VQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGN---GVHIVTVNDYLAKRDSEWMGRVHRFL-GLQVGVILA 188 (922)
T ss_dssp HHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEECCT
T ss_pred HHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeC
Confidence 4888999999987 99999999999999999864433332 69999999999999999999988887 899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHH-HHHHhcC------CcccCCccEEEEecccccccc---------------ccch
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRI-LALARDK------DLSLKNVRHFILDECDKMLES---------------LDMR 138 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~------~~~~~~~~~viiDE~H~~~~~---------------~~~~ 138 (356)
+.+........ + ++|+++||..| +.+++.. ...++.+.++|+||+|.+..+ .++.
T Consensus 189 g~~~~~r~~~y--~-~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y 265 (922)
T 1nkt_A 189 TMTPDERRVAY--N-ADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWY 265 (922)
T ss_dssp TCCHHHHHHHH--H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHH
T ss_pred CCCHHHHHHhc--C-CCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhHH
Confidence 88755433322 2 59999999999 6776654 355778999999999998732 2356
Q ss_pred hHHHHHHhhCC---------CCCcEE-----------------EEEecCccchHHH---H--HhhcC-C-------CeEE
Q 018420 139 RDVQEIFKMTP---------HDKQVM-----------------MFSATLSKEIRPV---C--KKFMQ-D-------PMEI 179 (356)
Q Consensus 139 ~~~~~~~~~~~---------~~~~~i-----------------~~SaT~~~~~~~~---~--~~~~~-~-------~~~~ 179 (356)
..+..+...++ ...++. ++|||.+.-.... + ..++. + +..+
T Consensus 266 ~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vv 345 (922)
T 1nkt_A 266 TEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVL 345 (922)
T ss_dssp HHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEE
T ss_pred HHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCceE
Confidence 67778888876 566777 7788865422211 1 11111 1 1111
Q ss_pred Eeccc---------------------------------------------------------------------------
Q 018420 180 YVDDE--------------------------------------------------------------------------- 184 (356)
Q Consensus 180 ~~~~~--------------------------------------------------------------------------- 184 (356)
.++..
T Consensus 346 iVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPt 425 (922)
T 1nkt_A 346 IVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPT 425 (922)
T ss_dssp EBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEECCC
T ss_pred EEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEEeCC
Confidence 11100
Q ss_pred cccccccceEEEEEcChhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHH
Q 018420 185 AKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKG 262 (356)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (356)
.....+.....++......+...+...+... .+.++||||++++.++.+++.|...|++...+|+++.+.++..+...
T Consensus 426 n~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~a 505 (922)
T 1nkt_A 426 NMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVA 505 (922)
T ss_dssp SSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTT
T ss_pred CCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhc
Confidence 0000000011234456667777777766542 55789999999999999999999999999999999877777766677
Q ss_pred hhcCCCcEEEEcCccccCCCCCCC----------------------------------------------------CEEE
Q 018420 263 FKEGNKRILVATDLVGRGIDIERV----------------------------------------------------NIVI 290 (356)
Q Consensus 263 f~~~~~~vlv~t~~~~~G~d~~~~----------------------------------------------------~~vi 290 (356)
|+.| .|+|||+++++|+|++.. .+||
T Consensus 506 gr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI 583 (922)
T 1nkt_A 506 GRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVL 583 (922)
T ss_dssp TSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEE
T ss_pred CCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEE
Confidence 7777 699999999999999975 4899
Q ss_pred EecCCCChhhhhhccccccCCCCcceEEEEEccCCC
Q 018420 291 NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASD 326 (356)
Q Consensus 291 ~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~ 326 (356)
.++.|.|...|.|++||+||.|.+|.+..|++..++
T Consensus 584 ~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 584 GTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp ECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred eccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 999999999999999999999999999999986443
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.2e-37 Score=291.04 Aligned_cols=305 Identities=18% Similarity=0.231 Sum_probs=185.8
Q ss_pred ccccHhhHhc----C-CcEEEEccCCCccchHhHHHhhcCcCCC------CCCeeEEEEcCchHHHHHHH-HHHHHHhcc
Q 018420 2 QHECIPQAIL----G-MDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTRELAYQIC-HEFERFSTY 69 (356)
Q Consensus 2 Q~~~~~~~~~----~-~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~vlii~P~~~l~~q~~-~~~~~~~~~ 69 (356)
|.++++.+.+ + +++++++|||+|||++++..+...+..+ ....+++|++|+++|+.|+. +.++.+
T Consensus 183 Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~--- 259 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFTPF--- 259 (590)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCTTT---
T ss_pred HHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHHhc---
Confidence 7888888765 4 6689999999999998765554443322 13348999999999999998 666544
Q ss_pred CCCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc----CCcccCCccEEEEeccccccccccchhHHHHHH
Q 018420 70 LPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARD----KDLSLKNVRHFILDECDKMLESLDMRRDVQEIF 145 (356)
Q Consensus 70 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~----~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~ 145 (356)
+..+..+.++. .....+|+|+|++.+...... ..+....+++||+||||++... ....+..+.
T Consensus 260 --~~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~--~~~~~~~il 326 (590)
T 3h1t_A 260 --GDARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSAR--DNSNWREIL 326 (590)
T ss_dssp --CSSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------CHHHH
T ss_pred --chhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCcccccc--chHHHHHHH
Confidence 22333333321 123369999999999876542 2334567899999999998652 123444555
Q ss_pred hhCCCCCcEEEEEecCccchHHHHHhhcCCCeEEEeccc----------------ccccccc--------------ceEE
Q 018420 146 KMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE----------------AKLTLHG--------------LVQH 195 (356)
Q Consensus 146 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~--------------~~~~ 195 (356)
..++ ..+++++||||..........+++.+...+.... ....... +...
T Consensus 327 ~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (590)
T 3h1t_A 327 EYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDG 405 (590)
T ss_dssp HHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC--------------------
T ss_pred HhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccc
Confidence 5554 4679999999986543333334443332211000 0000000 0000
Q ss_pred EEEcChhH-------HH----HHHHHHHhc-cCCCeEEEEecchhhHHHHHHHHHhCCC--------CeEEEecCCCHHH
Q 018420 196 YIKLSELE-------KN----RKLNDLLDA-LDFNQVVIFVKSVSRAAELNKLLVECNF--------PSICIHSGMSQEE 255 (356)
Q Consensus 196 ~~~~~~~~-------~~----~~~~~~~~~-~~~~~~ivf~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~ 255 (356)
........ +. ..+...++. ...+++||||++++.|+.+++.|.+.+. .+..+||.+++ +
T Consensus 406 ~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~ 484 (590)
T 3h1t_A 406 EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-I 484 (590)
T ss_dssp ---CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-H
T ss_pred cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-H
Confidence 00000000 11 112222333 3458999999999999999999987532 36678887654 7
Q ss_pred HHHHHHHhhcCCCc---EEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCC--cceEEEEEccC
Q 018420 256 RLTRYKGFKEGNKR---ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT--KGLAITFVSSA 324 (356)
Q Consensus 256 ~~~~~~~f~~~~~~---vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~--~~~~~~~~~~~ 324 (356)
|.++++.|++|+.+ ||++|+++++|+|+|.+++||+++++.|...|.|++||++|.+. .+..+++++..
T Consensus 485 r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 485 GKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 99999999998766 88899999999999999999999999999999999999999886 45566666654
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=5.4e-37 Score=298.54 Aligned_cols=314 Identities=18% Similarity=0.173 Sum_probs=216.3
Q ss_pred ccccHhhHhc--CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 2 QHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
|.+++..+.. +.++++.++||+|||++++..+......+... +++|+||+ +|+.||.+++.+.+ ++++..++
T Consensus 158 Q~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~-rvLIVvP~-sLl~Qw~~E~~~~f----~l~v~v~~ 231 (968)
T 3dmq_A 158 QLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAE-RVLIIVPE-TLQHQWLVEMLRRF----NLRFALFD 231 (968)
T ss_dssp HHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCC-CEEEECCT-TTHHHHHHHHHHHS----CCCCEECC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCC-eEEEEeCH-HHHHHHHHHHHHHh----CCCEEEEc
Confidence 7788887776 45789999999999999877776665544433 79999999 99999999997665 55666666
Q ss_pred cCcchHHhHHH-HhcCCCcEEEechHHHHHHHhc-CCcccCCccEEEEeccccccccccchhH-HHHHHhhCCCCCcEEE
Q 018420 80 GGVNIKIHKDL-LKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKMLESLDMRRD-VQEIFKMTPHDKQVMM 156 (356)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~~~~~~~~-~~~~~~~~~~~~~~i~ 156 (356)
++......... ......+|+|+|++.+...... ..+....+++||+||||++.+....... +..+........++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~ 311 (968)
T 3dmq_A 232 DERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLL 311 (968)
T ss_dssp HHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEE
T ss_pred cchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEE
Confidence 54322111110 0112358999999998642211 1123457899999999999764333222 2222222224456999
Q ss_pred EEecCccc----hHHHHHhhcCC-----------------------------C---------------------------
Q 018420 157 FSATLSKE----IRPVCKKFMQD-----------------------------P--------------------------- 176 (356)
Q Consensus 157 ~SaT~~~~----~~~~~~~~~~~-----------------------------~--------------------------- 176 (356)
+||||..+ ....+...... +
T Consensus 312 LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~ 391 (968)
T 3dmq_A 312 LTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANS 391 (968)
T ss_dssp SCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCC
T ss_pred EEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccc
Confidence 99999531 11111000000 0
Q ss_pred ------------------------eEEEec--cccccccccceEEEE---------------------------------
Q 018420 177 ------------------------MEIYVD--DEAKLTLHGLVQHYI--------------------------------- 197 (356)
Q Consensus 177 ------------------------~~~~~~--~~~~~~~~~~~~~~~--------------------------------- 197 (356)
..+... .......+.......
T Consensus 392 ~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pe 471 (968)
T 3dmq_A 392 DSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPE 471 (968)
T ss_dssp CSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCSG
T ss_pred hhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcChH
Confidence 000000 000000000000011
Q ss_pred ------------EcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHh-CCCCeEEEecCCCHHHHHHHHHHhh
Q 018420 198 ------------KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVE-CNFPSICIHSGMSQEERLTRYKGFK 264 (356)
Q Consensus 198 ------------~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~f~ 264 (356)
......+...+..++....++++||||++...+..++..|.+ .|+++..+||++++.+|..+++.|+
T Consensus 472 ~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~ 551 (968)
T 3dmq_A 472 RIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFA 551 (968)
T ss_dssp GGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHH
T ss_pred HHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Confidence 112223566777777777789999999999999999999995 5999999999999999999999999
Q ss_pred cCC--CcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEE
Q 018420 265 EGN--KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV 321 (356)
Q Consensus 265 ~~~--~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~ 321 (356)
+|+ ++|||||+++++|+|+|++++||++++|+++..|.|++||++|.|+.+.++++.
T Consensus 552 ~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 552 EEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp STTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred CCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 998 999999999999999999999999999999999999999999999988765553
No 52
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.2e-36 Score=288.65 Aligned_cols=305 Identities=14% Similarity=0.175 Sum_probs=212.6
Q ss_pred ccccHhhHhc-CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 2 QHECIPQAIL-GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 2 Q~~~~~~~~~-~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
|++++..+.. ++++++.||||||||+.....+.........+.++++++|+++|+.|+++++....+...+..++....
T Consensus 98 q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~ 177 (773)
T 2xau_A 98 QRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIR 177 (773)
T ss_dssp GHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEET
T ss_pred HHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceec
Confidence 6667766665 678999999999999843333322221111133699999999999999988766543322333332221
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccc-ccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDK-MLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~-~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
.... .....+|+++|++.+...+... ..+.++++||+||+|. ..+.......+..+.... +..+++++||
T Consensus 178 ~~~~-------~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SA 248 (773)
T 2xau_A 178 FENK-------TSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSA 248 (773)
T ss_dssp TEEE-------CCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEES
T ss_pred cccc-------cCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEec
Confidence 1111 1233689999999998866553 3578899999999996 333111223344444433 5788999999
Q ss_pred cCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHH----HHHHHHHHhccCCCeEEEEecchhhHHHHHH
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEK----NRKLNDLLDALDFNQVVIFVKSVSRAAELNK 235 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~ 235 (356)
|++. ..+ ..++.++..+...... ..+...+........ ...+..+......+++||||++++.++.+++
T Consensus 249 T~~~--~~l-~~~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~ 321 (773)
T 2xau_A 249 TLDA--EKF-QRYFNDAPLLAVPGRT----YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVR 321 (773)
T ss_dssp CSCC--HHH-HHHTTSCCEEECCCCC----CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHH
T ss_pred cccH--HHH-HHHhcCCCcccccCcc----cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHH
Confidence 9964 333 3444443333332221 122233332222222 2233333444467899999999999999999
Q ss_pred HHHh-----------CCCCeEEEecCCCHHHHHHHHHHhh-----cCCCcEEEEcCccccCCCCCCCCEEEEecC-----
Q 018420 236 LLVE-----------CNFPSICIHSGMSQEERLTRYKGFK-----EGNKRILVATDLVGRGIDIERVNIVINYDM----- 294 (356)
Q Consensus 236 ~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~f~-----~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~----- 294 (356)
.|.+ .+..+..+||++++.+|..+++.|. .|..+|||||+++++|+|+|++++||+++.
T Consensus 322 ~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~ 401 (773)
T 2xau_A 322 KISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKV 401 (773)
T ss_dssp HHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEE
T ss_pred HHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCcccee
Confidence 9985 4777889999999999999999999 999999999999999999999999999877
Q ss_pred -------------CCChhhhhhccccccCCCCcceEEEEEcc
Q 018420 295 -------------PDSADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 295 -------------~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
|.|..+|.||+||+||. .+|.|+.++..
T Consensus 402 yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~ 442 (773)
T 2xau_A 402 YNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 442 (773)
T ss_dssp EETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCH
T ss_pred eccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecH
Confidence 88999999999999998 78999988864
No 53
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=7.6e-36 Score=274.00 Aligned_cols=299 Identities=18% Similarity=0.229 Sum_probs=202.5
Q ss_pred ccccHhhHh----cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEE
Q 018420 2 QHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 77 (356)
Q Consensus 2 Q~~~~~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~ 77 (356)
|.++++.+. .++++++.++||+|||++++..+......+... +++||||+ +|+.||.++++++. ++.++..
T Consensus 42 Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~-~~LIv~P~-~l~~qw~~e~~~~~---~~~~v~~ 116 (500)
T 1z63_A 42 QIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELT-PSLVICPL-SVLKNWEEELSKFA---PHLRFAV 116 (500)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCS-SEEEEECS-TTHHHHHHHHHHHC---TTSCEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCC-CEEEEccH-HHHHHHHHHHHHHC---CCceEEE
Confidence 778887663 478899999999999988765555444333333 79999995 68999999999886 3567777
Q ss_pred EEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 78 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
++|+.... .....+|+|+|++.+..... +....+++||+||||++.+.. ....+....+. ..+.+++
T Consensus 117 ~~g~~~~~------~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~---~~~~~~l~~l~-~~~~l~L 183 (500)
T 1z63_A 117 FHEDRSKI------KLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ---TKIFKAVKELK-SKYRIAL 183 (500)
T ss_dssp CSSSTTSC------CGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT---SHHHHHHHTSC-EEEEEEE
T ss_pred EecCchhc------cccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh---HHHHHHHHhhc-cCcEEEE
Confidence 77754321 11235899999999965433 233467899999999996522 23333444443 4678999
Q ss_pred EecCccc-hHHH---H---------------------------------HhhcCCCeEEEecccc-----ccccccceEE
Q 018420 158 SATLSKE-IRPV---C---------------------------------KKFMQDPMEIYVDDEA-----KLTLHGLVQH 195 (356)
Q Consensus 158 SaT~~~~-~~~~---~---------------------------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 195 (356)
||||..+ ..++ + ...+ .|..+...... ..........
T Consensus 184 TaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~~~~~v 262 (500)
T 1z63_A 184 TGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDKIETNV 262 (500)
T ss_dssp CSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSEEEEEE
T ss_pred ecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCCeEEEE
Confidence 9999543 1111 0 0111 11111110000 0000000011
Q ss_pred EEEcCh-------------------------------------------------------hHHHHHHHHHHhcc--CCC
Q 018420 196 YIKLSE-------------------------------------------------------LEKNRKLNDLLDAL--DFN 218 (356)
Q Consensus 196 ~~~~~~-------------------------------------------------------~~~~~~~~~~~~~~--~~~ 218 (356)
+..... ..+...+..++... .+.
T Consensus 263 ~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~ 342 (500)
T 1z63_A 263 YCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGD 342 (500)
T ss_dssp EECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTC
T ss_pred EcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCC
Confidence 111111 11222233334332 567
Q ss_pred eEEEEecchhhHHHHHHHHHhC-CCCeEEEecCCCHHHHHHHHHHhhcC-CCc-EEEEcCccccCCCCCCCCEEEEecCC
Q 018420 219 QVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEG-NKR-ILVATDLVGRGIDIERVNIVINYDMP 295 (356)
Q Consensus 219 ~~ivf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~-vlv~t~~~~~G~d~~~~~~vi~~~~~ 295 (356)
++|||++....+..+...|... +..+..+||+++..+|.++++.|+++ ..+ +|++|+++++|+|+|.+++||++++|
T Consensus 343 k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~ 422 (500)
T 1z63_A 343 KIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRW 422 (500)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCC
T ss_pred cEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCC
Confidence 9999999999999999999985 99999999999999999999999998 555 78899999999999999999999999
Q ss_pred CChhhhhhccccccCCCCcceEEE
Q 018420 296 DSADTYLHRVGRAGRFGTKGLAIT 319 (356)
Q Consensus 296 ~s~~~~~Q~~GR~~R~~~~~~~~~ 319 (356)
+++..+.|++||++|.|+.+.+.+
T Consensus 423 ~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 423 WNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp SCC---CHHHHTTTTTTTTSCEEE
T ss_pred CCcchHHHHHHHHHHcCCCCeeEE
Confidence 999999999999999998877643
No 54
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=8.3e-34 Score=263.72 Aligned_cols=263 Identities=16% Similarity=0.165 Sum_probs=195.2
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD 89 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 89 (356)
+++++++++||||||||+.++..+... + ..+|++|+++|+.|++++++.. +.++..+.|+.......
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~~----~---~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~T- 219 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFSA----K---SGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTVQP- 219 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHS----S---SEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECCST-
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc----C---CeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEecC-
Confidence 468899999999999998555444433 1 3589999999999999998775 67888888876652110
Q ss_pred HHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCC-CCCcEEEEEecCccchHHH
Q 018420 90 LLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTP-HDKQVMMFSATLSKEIRPV 168 (356)
Q Consensus 90 ~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~-~~~~~i~~SaT~~~~~~~~ 168 (356)
.....+++++|++.+. ....+++||+||+|++.+ .++...+.......+ ...+++++|||.+ ....+
T Consensus 220 --pGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d-~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l 287 (677)
T 3rc3_A 220 --NGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRD-PARGWAWTRALLGLCAEEVHLCGEPAAID-LVMEL 287 (677)
T ss_dssp --TCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGC-TTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHH
T ss_pred --CCcccceeEecHhHhh--------hcccCCEEEEecceecCC-ccchHHHHHHHHccCccceEEEeccchHH-HHHHH
Confidence 0112578999986652 246779999999999966 667777777777666 6778999999953 23333
Q ss_pred HHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEe
Q 018420 169 CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIH 248 (356)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (356)
.. ..+.+..+...... ....+ ..... ..+.... .+.+|||++++.++.+++.|.+.+..+..+|
T Consensus 288 ~~-~~~~~~~v~~~~r~------~~l~~-~~~~l-------~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~~lH 351 (677)
T 3rc3_A 288 MY-TTGEEVEVRDYKRL------TPISV-LDHAL-------ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESAVIY 351 (677)
T ss_dssp HH-HHTCCEEEEECCCS------SCEEE-CSSCC-------CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCEEEC
T ss_pred HH-hcCCceEEEEeeec------chHHH-HHHHH-------HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCeeeee
Confidence 32 23344333221110 00001 00000 0111222 4458889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhc--CCCcEEEEcCccccCCCCCCCCEEEEecC--------------CCChhhhhhccccccCCC
Q 018420 249 SGMSQEERLTRYKGFKE--GNKRILVATDLVGRGIDIERVNIVINYDM--------------PDSADTYLHRVGRAGRFG 312 (356)
Q Consensus 249 ~~~~~~~~~~~~~~f~~--~~~~vlv~t~~~~~G~d~~~~~~vi~~~~--------------~~s~~~~~Q~~GR~~R~~ 312 (356)
|++++.+|.++++.|++ |+.+|||||+++++|+|+ +++.||+++. |.|..+|.||+||+||.|
T Consensus 352 G~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 352 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp TTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred ccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 99999999999999999 889999999999999999 8999999998 779999999999999998
Q ss_pred Cc
Q 018420 313 TK 314 (356)
Q Consensus 313 ~~ 314 (356)
+.
T Consensus 431 ~~ 432 (677)
T 3rc3_A 431 SR 432 (677)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 55
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=268.79 Aligned_cols=328 Identities=18% Similarity=0.197 Sum_probs=220.1
Q ss_pred ccccHhhHh----cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEE
Q 018420 2 QHECIPQAI----LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 77 (356)
Q Consensus 2 Q~~~~~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~ 77 (356)
|.+++..+. .++++|+..+||+|||+.++..+...........++||||| .+|+.||.+++.++. |++++..
T Consensus 241 Q~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~---p~~~v~~ 316 (800)
T 3mwy_W 241 QLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA---PDLNCIC 316 (800)
T ss_dssp HHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS---TTCCEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC---CCceEEE
Confidence 777887555 68899999999999998876555444322222226899999 678999999998886 5778888
Q ss_pred EEcCcchHHhHHH-----------HhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHh
Q 018420 78 FYGGVNIKIHKDL-----------LKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFK 146 (356)
Q Consensus 78 ~~~~~~~~~~~~~-----------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~ 146 (356)
++|+......... ......+|+|+|++.+...... +....+++||+||||++.+ ..........
T Consensus 317 ~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn---~~s~~~~~l~ 391 (800)
T 3mwy_W 317 YMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKN---AESSLYESLN 391 (800)
T ss_dssp CCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCC---SSSHHHHHHT
T ss_pred EeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcC---chhHHHHHHH
Confidence 8886654333222 1223468999999999764321 1223678899999999954 2234444444
Q ss_pred hCCCCCcEEEEEecCccc----hHHHHHhhcC-----------------------------CCeEEEeccccc---cccc
Q 018420 147 MTPHDKQVMMFSATLSKE----IRPVCKKFMQ-----------------------------DPMEIYVDDEAK---LTLH 190 (356)
Q Consensus 147 ~~~~~~~~i~~SaT~~~~----~~~~~~~~~~-----------------------------~~~~~~~~~~~~---~~~~ 190 (356)
.+. ....+++||||..+ +..++..+.. .|..+....... ....
T Consensus 392 ~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k 470 (800)
T 3mwy_W 392 SFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSK 470 (800)
T ss_dssp TSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCE
T ss_pred Hhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCc
Confidence 443 45589999999432 1111111100 011110000000 0000
Q ss_pred cceEEEEEcC----------------------------------------------------------------------
Q 018420 191 GLVQHYIKLS---------------------------------------------------------------------- 200 (356)
Q Consensus 191 ~~~~~~~~~~---------------------------------------------------------------------- 200 (356)
.....++...
T Consensus 471 ~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (800)
T 3mwy_W 471 TERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRG 550 (800)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHH
Confidence 0000000000
Q ss_pred ---hhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCC---cEEE
Q 018420 201 ---ELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK---RILV 272 (356)
Q Consensus 201 ---~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~vlv 272 (356)
...+...+..++... .+.++|||+.....+..+...|...|+....++|+++..+|.++++.|+++.. .+|+
T Consensus 551 l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~Ll 630 (800)
T 3mwy_W 551 LIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLL 630 (800)
T ss_dssp HHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEE
T ss_pred hhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEE
Confidence 011233344444443 45799999999999999999999999999999999999999999999998654 4899
Q ss_pred EcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEE--EEccC-CChHHHHHHHHHhcc
Q 018420 273 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT--FVSSA-SDSDILNQVQARFEV 339 (356)
Q Consensus 273 ~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~ 339 (356)
+|.++++|+|++.+++||++++++|+..+.|++||++|.|+...+.+ ++..+ -++.+++..+++...
T Consensus 631 St~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 631 STRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp EHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred ecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776643 44433 345555555555443
No 56
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=6.9e-33 Score=267.83 Aligned_cols=298 Identities=14% Similarity=0.119 Sum_probs=194.7
Q ss_pred ccccHhhHhc--------------CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHh
Q 018420 2 QHECIPQAIL--------------GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 67 (356)
Q Consensus 2 Q~~~~~~~~~--------------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~ 67 (356)
|.+|++.+.. +++++++++||||||+++ +.++..+...+...++++++|+++|+.|+.+++..+.
T Consensus 276 Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~ 354 (1038)
T 2w00_A 276 QIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFS 354 (1038)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHHHhc
Confidence 7788887765 367999999999999986 4444544433333489999999999999999998875
Q ss_pred ccCCCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCC--cccCCccEEEEeccccccccccchhHHHHHH
Q 018420 68 TYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD--LSLKNVRHFILDECDKMLESLDMRRDVQEIF 145 (356)
Q Consensus 68 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~ 145 (356)
... +.++.+.......+.....+|+|+|+++|...+.... ..+....+||+||||+... ......+.
T Consensus 355 ~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~----~~~~~~I~ 423 (1038)
T 2w00_A 355 PDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF----GEAQKNLK 423 (1038)
T ss_dssp TTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH----HHHHHHHH
T ss_pred ccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc----hHHHHHHH
Confidence 321 1234444444555554557999999999998766432 2356788999999998743 22344555
Q ss_pred hhCCCCCcEEEEEecCccchH----HHHHhhcCC-----------------CeEEEeccc-cccc----------cccce
Q 018420 146 KMTPHDKQVMMFSATLSKEIR----PVCKKFMQD-----------------PMEIYVDDE-AKLT----------LHGLV 193 (356)
Q Consensus 146 ~~~~~~~~~i~~SaT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~-~~~~----------~~~~~ 193 (356)
..++ +.+++++||||..... .....+++. |..+..... .... .....
T Consensus 424 ~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~ 502 (1038)
T 2w00_A 424 KKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAE 502 (1038)
T ss_dssp HHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTC
T ss_pred HhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHH
Confidence 5564 5789999999975321 111122222 222111100 0000 00000
Q ss_pred EEEEEcChhHHHHH-HHHHHh----c-------cCCCeEEEEecchhhHHHHHHHHHhCC------------CCeE-EEe
Q 018420 194 QHYIKLSELEKNRK-LNDLLD----A-------LDFNQVVIFVKSVSRAAELNKLLVECN------------FPSI-CIH 248 (356)
Q Consensus 194 ~~~~~~~~~~~~~~-~~~~~~----~-------~~~~~~ivf~~~~~~~~~~~~~l~~~~------------~~~~-~~~ 248 (356)
.... .....+... +..++. . ..+.++||||++++.|..+++.|.+.+ .++. .+|
T Consensus 503 ~~~~-l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s 581 (1038)
T 2w00_A 503 NQQA-FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFS 581 (1038)
T ss_dssp STTT-TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECC
T ss_pred HHHH-hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEe
Confidence 0000 001111112 222222 1 134589999999999999999998754 4443 444
Q ss_pred cC----------C----------CH-----------------------------HHHHHHHHHhhcCCCcEEEEcCcccc
Q 018420 249 SG----------M----------SQ-----------------------------EERLTRYKGFKEGNKRILVATDLVGR 279 (356)
Q Consensus 249 ~~----------~----------~~-----------------------------~~~~~~~~~f~~~~~~vlv~t~~~~~ 279 (356)
+. + ++ ..|.++++.|++|+++|||+|+++.+
T Consensus 582 ~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~llt 661 (1038)
T 2w00_A 582 FAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLT 661 (1038)
T ss_dssp CCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSS
T ss_pred CCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHh
Confidence 32 1 21 13778899999999999999999999
Q ss_pred CCCCCCCCEEEEecCCCChhhhhhccccccCCCCc
Q 018420 280 GIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK 314 (356)
Q Consensus 280 G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~ 314 (356)
|+|+|.+ .++.++.|.+...++|++||++|.+.+
T Consensus 662 GfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 662 GFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp SCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred CcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 9999999 566788999999999999999998653
No 57
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.4e-32 Score=252.11 Aligned_cols=326 Identities=16% Similarity=0.144 Sum_probs=212.7
Q ss_pred ccccHhhHh---------cCCcEEEEccCCCccchHhHHHhhcCcCCCC----CCeeEEEEcCchHHHHHHHHHHHHHhc
Q 018420 2 QHECIPQAI---------LGMDVICQAKSGMGKTAVFVLSTLQQTEPNP----GQVTALVLCHTRELAYQICHEFERFST 68 (356)
Q Consensus 2 Q~~~~~~~~---------~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~----~~~~vlii~P~~~l~~q~~~~~~~~~~ 68 (356)
|.+++..+. .++..|+..+||+|||+.++..+.......+ ...+++||||+ +|+.||.+++.++..
T Consensus 60 Q~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~~~~~~ 138 (644)
T 1z3i_X 60 QREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEVGKWLG 138 (644)
T ss_dssp HHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHHHHHcC
Confidence 677777763 3567899999999999887666654433321 22369999996 899999999999875
Q ss_pred cCCCceEEEEEcCcchHHhHH--HH-hc----CCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHH
Q 018420 69 YLPDIKVAVFYGGVNIKIHKD--LL-KN----ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDV 141 (356)
Q Consensus 69 ~~~~~~v~~~~~~~~~~~~~~--~~-~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~ 141 (356)
. .+.+..+.++........ .. .. ...+|+|+|++.+..... .+....+++||+||||++.+.. ...
T Consensus 139 ~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~---~~~ 211 (644)
T 1z3i_X 139 G--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD---NQT 211 (644)
T ss_dssp G--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC---HHH
T ss_pred C--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh---hHH
Confidence 4 355666666544322221 11 11 135899999999976432 3334578899999999996522 222
Q ss_pred HHHHhhCCCCCcEEEEEecCccch----H---------------HHHHhhc-----------------------------
Q 018420 142 QEIFKMTPHDKQVMMFSATLSKEI----R---------------PVCKKFM----------------------------- 173 (356)
Q Consensus 142 ~~~~~~~~~~~~~i~~SaT~~~~~----~---------------~~~~~~~----------------------------- 173 (356)
......+ .....+++||||-.+. . .+...+.
T Consensus 212 ~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 290 (644)
T 1z3i_X 212 YLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISI 290 (644)
T ss_dssp HHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHH
Confidence 2223333 3456899999985431 0 0000000
Q ss_pred CCCeEEEecccc---ccccccceEEEEEcC--------------------------------------------------
Q 018420 174 QDPMEIYVDDEA---KLTLHGLVQHYIKLS-------------------------------------------------- 200 (356)
Q Consensus 174 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------------------------------------------------- 200 (356)
-.|..+...... ..+.+.....++..+
T Consensus 291 l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~ 370 (644)
T 1z3i_X 291 VNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKC 370 (644)
T ss_dssp HHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred HHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHH
Confidence 000000000000 000000000000000
Q ss_pred --------------------------hhHHHHHHHHHHhc---cCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCC
Q 018420 201 --------------------------ELEKNRKLNDLLDA---LDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 251 (356)
Q Consensus 201 --------------------------~~~~~~~~~~~~~~---~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 251 (356)
...+...+..++.. ..+.++|||++....+..+...|...++....+||++
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~ 450 (644)
T 1z3i_X 371 LTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTM 450 (644)
T ss_dssp HHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred hcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 01122223333322 3468999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCc---EEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEE--EEccCC-
Q 018420 252 SQEERLTRYKGFKEGNKR---ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAIT--FVSSAS- 325 (356)
Q Consensus 252 ~~~~~~~~~~~f~~~~~~---vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~--~~~~~~- 325 (356)
+..+|.++++.|++++.. +|++|.++++|+|++.+++||++++|+++..+.|++||++|.|+.+.+.+ ++..+.
T Consensus 451 ~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 451 SIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred CHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCH
Confidence 999999999999998654 88999999999999999999999999999999999999999998876543 444433
Q ss_pred ChHHHHHHHHH
Q 018420 326 DSDILNQVQAR 336 (356)
Q Consensus 326 ~~~~~~~~~~~ 336 (356)
++.+.+....+
T Consensus 531 Ee~i~~~~~~K 541 (644)
T 1z3i_X 531 EEKILQRQAHK 541 (644)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 58
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.98 E-value=3e-30 Score=234.07 Aligned_cols=303 Identities=18% Similarity=0.209 Sum_probs=214.2
Q ss_pred HhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC-------
Q 018420 9 AILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG------- 81 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~------- 81 (356)
+.+|+ +..+.||+|||+++.+++......+. .+.+++|+..|+.|-++++..+...+ |+.++++.+.
T Consensus 87 L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~---~vhVvT~ndyLA~rdae~m~~l~~~L-glsvg~i~~~~~~~~~~ 160 (822)
T 3jux_A 87 LHEGK--VAEMKTGEGKTLAATMPIYLNALIGK---GVHLVTVNDYLARRDALWMGPVYLFL-GLRVGVINSLGKSYEVV 160 (822)
T ss_dssp HHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHT-TCCEEEEETTTEEEEEE
T ss_pred HhCCC--hhhccCCCCccHHHHHHHHHHHhcCC---ceEEEeccHHHHHhHHHHHHHHHHHh-CCEEEEEcCCCcccccc
Confidence 34444 89999999999999988875544433 58999999999999999998888887 9999998872
Q ss_pred -------------------------------------------cchHHhHHHHhcCCCcEEEechHHH-HHHHhcC----
Q 018420 82 -------------------------------------------VNIKIHKDLLKNECPQIVVGTPGRI-LALARDK---- 113 (356)
Q Consensus 82 -------------------------------------------~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~---- 113 (356)
.+... ++..+. ++|+++|...| +.+++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e-rr~aY~--~DItYgTn~EfgFDYLRDnm~~~ 237 (822)
T 3jux_A 161 WKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEIT-RKEAYL--CDVTYGTNNEFGFDYLRDNLVLD 237 (822)
T ss_dssp ESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCC-HHHHHH--SSEEEEEHHHHHHHHHHHTSCSS
T ss_pred cccchhhhhhhcccccccccccccccccccccccccchhccccCCHHH-HHHHhc--CCCEEccCcchhhHhHHhhccCC
Confidence 11112 222222 49999999887 4455533
Q ss_pred --CcccCCccEEEEecccccccc---------------ccchh--------------------------------HHHHH
Q 018420 114 --DLSLKNVRHFILDECDKMLES---------------LDMRR--------------------------------DVQEI 144 (356)
Q Consensus 114 --~~~~~~~~~viiDE~H~~~~~---------------~~~~~--------------------------------~~~~~ 144 (356)
..-.+.+.+.||||++.+.=+ ..... .+..+
T Consensus 238 ~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~lTe~G~~~~E~~ 317 (822)
T 3jux_A 238 YNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTIILTEEGVAKAEKI 317 (822)
T ss_dssp TTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEEECHHHHHHHHHH
T ss_pred HHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEEECHHHHHHHHHH
Confidence 222467889999999988500 00000 00000
Q ss_pred H------------------------hhCCC--------------------------------------------------
Q 018420 145 F------------------------KMTPH-------------------------------------------------- 150 (356)
Q Consensus 145 ~------------------------~~~~~-------------------------------------------------- 150 (356)
+ ..+..
T Consensus 318 l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKEgv~i~~e~~tl 397 (822)
T 3jux_A 318 IGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAKEGVPIKEESITY 397 (822)
T ss_dssp HTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHHHSSCCCCCCCEE
T ss_pred hCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHHcCCCCCCCcchh
Confidence 0 00000
Q ss_pred -----------CCcEEEEEecCccchHHHHHhhcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhcc--CC
Q 018420 151 -----------DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL--DF 217 (356)
Q Consensus 151 -----------~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 217 (356)
-.++.+||||......++...+ +-. .+.+... ..................+...+...+... .+
T Consensus 398 a~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY-~l~-vv~IPtn-kp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~g 474 (822)
T 3jux_A 398 ATITFQNYFRMYEKLAGMTGTAKTEESEFVQVY-GME-VVVIPTH-KPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKG 474 (822)
T ss_dssp EEECHHHHHTTSSEEEEEESSCGGGHHHHHHHS-CCC-EEECCCS-SCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHeEECCCCchHHHHHHHHh-CCe-EEEECCC-CCcceeecCcEEEecHHHHHHHHHHHHHHHhhCC
Confidence 0158999999987665554444 332 2222222 111122222345556677777777777653 56
Q ss_pred CeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCC--------CCCEE
Q 018420 218 NQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIE--------RVNIV 289 (356)
Q Consensus 218 ~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~--------~~~~v 289 (356)
.++||||++++.++.+++.|.+.|++...+||+..+.++..+...++.| .|+|||+++++|+|++ +..+|
T Consensus 475 qpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhV 552 (822)
T 3jux_A 475 QPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCI 552 (822)
T ss_dssp CCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEE
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEE
Confidence 7999999999999999999999999999999985555555444555554 6999999999999998 55699
Q ss_pred EEecCCCChhhhhhccccccCCCCcceEEEEEccCC
Q 018420 290 INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 325 (356)
Q Consensus 290 i~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~ 325 (356)
|.++.|.|...|.||+||+||.|.+|.++.+++..+
T Consensus 553 Inte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 553 IGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred EecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 999999999999999999999999999999999654
No 59
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=4.3e-31 Score=216.12 Aligned_cols=180 Identities=78% Similarity=1.305 Sum_probs=159.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.++++++....+++++..+.|
T Consensus 40 ~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g 119 (220)
T 1t6n_A 40 VQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFG 119 (220)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESC
T ss_pred HHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeC
Confidence 48999999999999999999999999999999998877655555899999999999999999999987776889999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.....+...+..+.++|+|+||+.+...+.+....+.+++++|+||||++.++.++...+..+....+...+++++|||
T Consensus 120 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 199 (220)
T 1t6n_A 120 GLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 199 (220)
T ss_dssp CSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESC
T ss_pred CCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEee
Confidence 98877777777766679999999999999888888889999999999999976556778888888888888999999999
Q ss_pred CccchHHHHHhhcCCCeEEE
Q 018420 161 LSKEIRPVCKKFMQDPMEIY 180 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (356)
++.....+.+.++.+|..+.
T Consensus 200 ~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 200 LSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp CCTTTHHHHHTTCSSCEEEE
T ss_pred cCHHHHHHHHHHcCCCeEEe
Confidence 99999999999999987653
No 60
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=2.4e-30 Score=209.53 Aligned_cols=177 Identities=30% Similarity=0.530 Sum_probs=155.8
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
.|.++++.+.+++++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.+.++++....++..+..+.|
T Consensus 29 ~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g 108 (206)
T 1vec_A 29 IQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTG 108 (206)
T ss_dssp HHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECS
T ss_pred HHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeC
Confidence 48999999999999999999999999999999988876655556899999999999999999999987766788999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+............ .++|+|+||+.+...+.+....+.+++++|+||||++.+ .++...+..+....+...+++++|||
T Consensus 109 ~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~-~~~~~~l~~i~~~~~~~~~~l~~SAT 186 (206)
T 1vec_A 109 GTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS-QDFVQIMEDIILTLPKNRQILLYSAT 186 (206)
T ss_dssp SSCHHHHHHHTTS-CCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS-TTTHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CccHHHHHHhcCC-CCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh-hCcHHHHHHHHHhCCccceEEEEEee
Confidence 8887666555544 369999999999998888877888999999999999877 67888889998888888999999999
Q ss_pred CccchHHHHHhhcCCCeEE
Q 018420 161 LSKEIRPVCKKFMQDPMEI 179 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~ 179 (356)
++.....++..++.+|..+
T Consensus 187 ~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 187 FPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp CCHHHHHHHHHHCSSCEEE
T ss_pred CCHHHHHHHHHHcCCCeEe
Confidence 9999999999999988654
No 61
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=1.1e-30 Score=216.52 Aligned_cols=181 Identities=28% Similarity=0.469 Sum_probs=159.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-----CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKV 75 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v 75 (356)
+|.++++.+.+++++++.+|||+|||++|+++++..+... ..+++++|++|+++|+.|+.+.++++.... ++.+
T Consensus 55 ~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~ 133 (242)
T 3fe2_A 55 IQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKS 133 (242)
T ss_dssp HHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT-TCCE
T ss_pred HHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc-CceE
Confidence 4899999999999999999999999999999888765432 234479999999999999999999988776 7899
Q ss_pred EEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEE
Q 018420 76 AVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 155 (356)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (356)
..+.|+.........+..+ ++|+|+||+.+...+.+....+.+++++|+||||++.+ .++...+..+...+++..|++
T Consensus 134 ~~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~-~~~~~~~~~i~~~~~~~~q~~ 211 (242)
T 3fe2_A 134 TCIYGGAPKGPQIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTL 211 (242)
T ss_dssp EEECTTSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHH-TTCHHHHHHHHTTSCSSCEEE
T ss_pred EEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhh-hCcHHHHHHHHHhCCccceEE
Confidence 9999998887776666655 69999999999999988888889999999999999987 678999999999998899999
Q ss_pred EEEecCccchHHHHHhhcCCCeEEEeccc
Q 018420 156 MFSATLSKEIRPVCKKFMQDPMEIYVDDE 184 (356)
Q Consensus 156 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 184 (356)
++|||+++.+..++..++.+|..+.+...
T Consensus 212 ~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 212 MWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp EEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred EEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999988876543
No 62
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=2.3e-30 Score=212.94 Aligned_cols=178 Identities=35% Similarity=0.483 Sum_probs=155.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+.+++++++.+|||+|||++|+++++..+.......+++|++|+++|+.|+.++++++....+++++..+.|
T Consensus 50 ~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g 129 (230)
T 2oxc_A 50 VQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIG 129 (230)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECT
T ss_pred HHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeC
Confidence 48999999999999999999999999999998888776555455899999999999999999999887666889999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.....+...+. ..+|+|+||+.+...+......+.+++++|+||||++.++..+...+..+...++...|++++|||
T Consensus 130 ~~~~~~~~~~~~--~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT 207 (230)
T 2oxc_A 130 GTPLSQDKTRLK--KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSAT 207 (230)
T ss_dssp TSCHHHHHHHTT--SCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESC
T ss_pred CCCHHHHHHhcc--CCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEec
Confidence 888766665554 369999999999999888777788999999999999987434888889999888888999999999
Q ss_pred CccchHHHHHhhcCCCeEEE
Q 018420 161 LSKEIRPVCKKFMQDPMEIY 180 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (356)
+++....++..++.+|..+.
T Consensus 208 ~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 208 YPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp CCHHHHHHHTTTCSSCEEEC
T ss_pred cCHHHHHHHHHHcCCCeEEE
Confidence 99998899999999887654
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=4.1e-30 Score=211.40 Aligned_cols=176 Identities=28% Similarity=0.527 Sum_probs=147.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC------CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN------PGQVTALVLCHTRELAYQICHEFERFSTYLPDIK 74 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~------~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~ 74 (356)
+|.++++.+.+++++++.+|||+|||++|+++++..+... ..+++++|++|+++|+.|+.++++++.. .++.
T Consensus 46 ~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~ 123 (228)
T 3iuy_A 46 IQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY--KGLK 123 (228)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCC--TTCC
T ss_pred HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc--cCce
Confidence 4899999999999999999999999999999888765432 2344799999999999999999998753 3788
Q ss_pred EEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcE
Q 018420 75 VAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQV 154 (356)
Q Consensus 75 v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (356)
+..+.|+.........+..+ ++|+|+||+.+..+.......++++++||+||||++.+ .++...+..+....+++.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~ 201 (228)
T 3iuy_A 124 SICIYGGRNRNGQIEDISKG-VDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLD-MEFEPQIRKILLDVRPDRQT 201 (228)
T ss_dssp EEEECC------CHHHHHSC-CSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHH-TTCHHHHHHHHHHSCSSCEE
T ss_pred EEEEECCCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhc-cchHHHHHHHHHhCCcCCeE
Confidence 88999988877666666655 69999999999998888888889999999999999887 57888999999999889999
Q ss_pred EEEEecCccchHHHHHhhcCCCeEEE
Q 018420 155 MMFSATLSKEIRPVCKKFMQDPMEIY 180 (356)
Q Consensus 155 i~~SaT~~~~~~~~~~~~~~~~~~~~ 180 (356)
+++|||+++....++..++.+|..+.
T Consensus 202 l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 202 VMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp EEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred EEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999998764
No 64
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=3.4e-30 Score=212.83 Aligned_cols=179 Identities=41% Similarity=0.613 Sum_probs=146.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+++++++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.+.++++.... +..+..+.|
T Consensus 56 ~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g 134 (237)
T 3bor_A 56 IQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIG 134 (237)
T ss_dssp HHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC
T ss_pred HHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEEC
Confidence 4899999999999999999999999999999999887665555589999999999999999999987665 678888888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.........+..+.++|+|+||+.+...+.+....+..+++||+||||++.+ .++...+..+....+...+++++|||
T Consensus 135 ~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~-~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 135 GTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS-RGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp -------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHH-TTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred CCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhc-cCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 87766666566666579999999999998888777788999999999999876 57788888888888888999999999
Q ss_pred CccchHHHHHhhcCCCeEEEe
Q 018420 161 LSKEIRPVCKKFMQDPMEIYV 181 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~ 181 (356)
+++.+..++..++.+|..+.+
T Consensus 214 ~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 214 MPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp CCHHHHHHHHHHCSSCEEEC-
T ss_pred cCHHHHHHHHHHCCCCEEEEe
Confidence 999999999999999877654
No 65
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=4.5e-30 Score=209.78 Aligned_cols=180 Identities=33% Similarity=0.591 Sum_probs=153.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCC---CceEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP---DIKVAV 77 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~---~~~v~~ 77 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.++++++....+ ++.+..
T Consensus 30 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 109 (219)
T 1q0u_A 30 IQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARC 109 (219)
T ss_dssp HHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEE
T ss_pred HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEE
Confidence 48999999999999999999999999999999998877665556899999999999999999999876543 567888
Q ss_pred EEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 78 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
+.|+.......+.+. ..++|+|+||+.+...+.+....+..++++|+||||++.+ .++...+..+....+...|++++
T Consensus 110 ~~g~~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~-~~~~~~l~~i~~~~~~~~~~l~~ 187 (219)
T 1q0u_A 110 LIGGTDKQKALEKLN-VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLD-MGFITDVDQIAARMPKDLQMLVF 187 (219)
T ss_dssp ECCCSHHHHTTCCCS-SCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHH-TTCHHHHHHHHHTSCTTCEEEEE
T ss_pred EeCCCCHHHHHHHcC-CCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhh-hChHHHHHHHHHhCCcccEEEEE
Confidence 888776554433332 2468999999999998888777888999999999999987 57888888898888888999999
Q ss_pred EecCccchHHHHHhhcCCCeEEEec
Q 018420 158 SATLSKEIRPVCKKFMQDPMEIYVD 182 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~~~~~~~ 182 (356)
|||++..+..+++.++.+|..+...
T Consensus 188 SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 188 SATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp ESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred ecCCCHHHHHHHHHHcCCCeEEEee
Confidence 9999999999999999999876543
No 66
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=9.3e-30 Score=211.42 Aligned_cols=178 Identities=34% Similarity=0.643 Sum_probs=154.5
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+...+...+++|++|+++|+.|+.+.++++.... ++.+..+.|
T Consensus 69 ~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g 147 (249)
T 3ber_A 69 IQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVG 147 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECT
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEEC
Confidence 4899999999999999999999999999999998876655555589999999999999999999987765 788999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhc-CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
+.........+..+ ++|+|+||+++...+.+ ....+..+++||+||||++.+ .++...+..+...++...+++++||
T Consensus 148 ~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~-~~~~~~l~~i~~~~~~~~~~l~~SA 225 (249)
T 3ber_A 148 GIDSMSQSLALAKK-PHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN-MDFETEVDKILKVIPRDRKTFLFSA 225 (249)
T ss_dssp TSCHHHHHHHHHTC-CSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH-TTCHHHHHHHHHSSCSSSEEEEEES
T ss_pred CCChHHHHHHhcCC-CCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc-cChHHHHHHHHHhCCCCCeEEEEec
Confidence 88766655555544 69999999999998775 456688899999999999887 5888889999998888899999999
Q ss_pred cCccchHHHHHhhcCCCeEEEe
Q 018420 160 TLSKEIRPVCKKFMQDPMEIYV 181 (356)
Q Consensus 160 T~~~~~~~~~~~~~~~~~~~~~ 181 (356)
|++..+..++..++.+|..+.+
T Consensus 226 T~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 226 TMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp SCCHHHHHHHHHHCSSCEEEEC
T ss_pred cCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999987654
No 67
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=9.9e-30 Score=208.63 Aligned_cols=178 Identities=37% Similarity=0.589 Sum_probs=148.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+.......+++|++|+++|+.|+.+.++++.... ++.+..+.|
T Consensus 40 ~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g 118 (224)
T 1qde_A 40 IQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIG 118 (224)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC
T ss_pred HHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeC
Confidence 4899999999999999999999999999999998887666556689999999999999999999887665 788888888
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
+.........+.. ++|+|+||+.+...+.+....+.++++||+||||++.+ .++...+..+....+...+++++|||
T Consensus 119 ~~~~~~~~~~~~~--~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~-~~~~~~l~~i~~~~~~~~~~i~lSAT 195 (224)
T 1qde_A 119 GTSFVEDAEGLRD--AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS-SGFKEQIYQIFTLLPPTTQVVLLSAT 195 (224)
T ss_dssp ----------CTT--CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH-TTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred CcchHHHHhcCCC--CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhh-hhhHHHHHHHHHhCCccCeEEEEEee
Confidence 8776555544443 69999999999998888888888999999999999877 57888888888888888999999999
Q ss_pred CccchHHHHHhhcCCCeEEEec
Q 018420 161 LSKEIRPVCKKFMQDPMEIYVD 182 (356)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~ 182 (356)
+++.+..+++.++.+|..+.+.
T Consensus 196 ~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 196 MPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp CCHHHHHHHHHHCSSCEEEC--
T ss_pred cCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999876554
No 68
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=216.51 Aligned_cols=178 Identities=32% Similarity=0.511 Sum_probs=154.9
Q ss_pred CccccHhhHhcC--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|.++++.++++ +++++++|||||||++|+++++..+......++++|++|+++|+.|+.+.++.+....+++.+...
T Consensus 118 iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~ 197 (300)
T 3fmo_B 118 IQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYA 197 (300)
T ss_dssp HHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEE
T ss_pred HHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 489999999987 999999999999999999999998877766668999999999999999999999877778889988
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhc-CCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARD-KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
.|+....... ....+|+|+||+++..++.+ ..+.+.++++||+||||++.+..++...+..+...++..+|++++
T Consensus 198 ~~~~~~~~~~----~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~ 273 (300)
T 3fmo_B 198 VRGNKLERGQ----KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLF 273 (300)
T ss_dssp STTCCCCTTC----CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEE
T ss_pred eCCccHhhhh----cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEE
Confidence 8876643322 23468999999999998865 566788999999999999986457888888899988889999999
Q ss_pred EecCccchHHHHHhhcCCCeEEEec
Q 018420 158 SATLSKEIRPVCKKFMQDPMEIYVD 182 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~~~~~~~ 182 (356)
|||++..+..++..++.+|..+.+.
T Consensus 274 SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 274 SATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp ESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred eccCCHHHHHHHHHHCCCCeEEEec
Confidence 9999999999999999999887653
No 69
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.96 E-value=3.7e-29 Score=195.53 Aligned_cols=166 Identities=69% Similarity=1.078 Sum_probs=147.7
Q ss_pred ccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCc
Q 018420 190 HGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 269 (356)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 269 (356)
..+.+.+.......+...+..+++....+++||||++.+.+..+++.|...+..+..+||++++.+|..+++.|++|+.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~ 83 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR 83 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc
Confidence 45677888888888999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcccCcccc
Q 018420 270 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 349 (356)
Q Consensus 270 vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (356)
|||+|+++++|+|+|++++||++++|++...|.||+||+||.|+.|.+++++.+.++...++.+++.++..++++|..++
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 163 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC----
T ss_pred EEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhc
Confidence 99999999999999999999999999999999999999999999999999998766778889999999999999999998
Q ss_pred cCCCCC
Q 018420 350 TSTYMP 355 (356)
Q Consensus 350 ~~~~~~ 355 (356)
.+.|++
T Consensus 164 ~~~~~~ 169 (172)
T 1t5i_A 164 ISSYIE 169 (172)
T ss_dssp -----C
T ss_pred hhhccc
Confidence 877765
No 70
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.96 E-value=6e-29 Score=201.46 Aligned_cols=176 Identities=36% Similarity=0.580 Sum_probs=151.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC---CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAV 77 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~ 77 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+... ...++++|++|+++|+.|+.++++++.. .+++..
T Consensus 27 ~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~ 103 (207)
T 2gxq_A 27 IQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP---HLKVVA 103 (207)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT---TSCEEE
T ss_pred HHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh---cceEEE
Confidence 4899999999999999999999999999998888776532 2344899999999999999999998864 367888
Q ss_pred EEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 78 FYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
+.|+.....+...+..+ ++|+|+||+.+...+.+....+.+++++|+||||++.+ .++...+..+....+...+++++
T Consensus 104 ~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~-~~~~~~~~~i~~~~~~~~~~i~~ 181 (207)
T 2gxq_A 104 VYGGTGYGKQKEALLRG-ADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS-MGFEEEVEALLSATPPSRQTLLF 181 (207)
T ss_dssp ECSSSCSHHHHHHHHHC-CSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH-TTCHHHHHHHHHTSCTTSEEEEE
T ss_pred EECCCChHHHHHHhhCC-CCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc-cchHHHHHHHHHhCCccCeEEEE
Confidence 88888776666555544 69999999999998888888889999999999999876 57888888888888888999999
Q ss_pred EecCccchHHHHHhhcCCCeEEEe
Q 018420 158 SATLSKEIRPVCKKFMQDPMEIYV 181 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~~~~~~ 181 (356)
|||+++....+...++.+|..+.+
T Consensus 182 SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 182 SATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp CSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999977643
No 71
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.96 E-value=8.7e-29 Score=206.70 Aligned_cols=181 Identities=29% Similarity=0.517 Sum_probs=151.8
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC---------CCCeeEEEEcCchHHHHHHHHHHHHHhccCC
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---------PGQVTALVLCHTRELAYQICHEFERFSTYLP 71 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---------~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~ 71 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+... ...++++|++|+++|+.|+.++++++....
T Consensus 49 ~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~- 127 (253)
T 1wrb_A 49 IQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT- 127 (253)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccC-
Confidence 4899999999999999999999999999999888765432 123489999999999999999999987665
Q ss_pred CceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhC--C
Q 018420 72 DIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT--P 149 (356)
Q Consensus 72 ~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~--~ 149 (356)
++.+..+.|+.........+..+ ++|+|+||+.+...+......+..++++|+||||++.+ .++...+..+.... +
T Consensus 128 ~~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~ 205 (253)
T 1wrb_A 128 PLRSCVVYGGADTHSQIREVQMG-CHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD-MGFEPQIRKIIEESNMP 205 (253)
T ss_dssp SCCEEEECSSSCSHHHHHHHSSC-CSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHH-TTCHHHHHHHHHSSCCC
T ss_pred CceEEEEECCCCHHHHHHHhCCC-CCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHh-CchHHHHHHHHhhccCC
Confidence 67888899988877666655544 69999999999999988888889999999999999887 57888888888743 3
Q ss_pred C--CCcEEEEEecCccchHHHHHhhcCCCeEEEeccc
Q 018420 150 H--DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDE 184 (356)
Q Consensus 150 ~--~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 184 (356)
. ..|++++|||+++.+..+...++.+|..+.....
T Consensus 206 ~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 206 SGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp CGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred CCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 3 6789999999999999999999999987766543
No 72
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.96 E-value=5.9e-29 Score=205.57 Aligned_cols=178 Identities=26% Similarity=0.505 Sum_probs=148.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC----CCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP----NPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~----~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~ 76 (356)
+|.++++.+.+++++++.+|||+|||++++++++..+.. ...+.+++|++|+++|+.|+.+.++++.... ++.+.
T Consensus 51 ~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~ 129 (236)
T 2pl3_A 51 IQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH-DFSAG 129 (236)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTS-SCCEE
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEE
Confidence 489999999999999999999999999999888866432 1223479999999999999999999987654 68899
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC-CcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEE
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 155 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (356)
.+.|+.........+. .++|+|+||+.+...+... ...+.+++++|+||||++.+ .++...+..+...++...+++
T Consensus 130 ~~~g~~~~~~~~~~~~--~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~-~~~~~~~~~i~~~~~~~~~~l 206 (236)
T 2pl3_A 130 LIIGGKDLKHEAERIN--NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILD-MGFADTMNAVIENLPKKRQTL 206 (236)
T ss_dssp EECCC--CHHHHHHHT--TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHH-TTTHHHHHHHHHTSCTTSEEE
T ss_pred EEECCCCHHHHHHhCC--CCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhc-CCcHHHHHHHHHhCCCCCeEE
Confidence 9999887766655553 3699999999999877654 46678899999999999876 577888999999998899999
Q ss_pred EEEecCccchHHHHHhhcCCCeEEEec
Q 018420 156 MFSATLSKEIRPVCKKFMQDPMEIYVD 182 (356)
Q Consensus 156 ~~SaT~~~~~~~~~~~~~~~~~~~~~~ 182 (356)
++|||+++.+..+.+.++.+|..+.+.
T Consensus 207 ~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 207 LFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp EEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred EEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999877654
No 73
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.96 E-value=5.1e-29 Score=208.57 Aligned_cols=174 Identities=28% Similarity=0.471 Sum_probs=148.9
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC----CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN----PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~----~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~ 76 (356)
+|.++++.+..++++++++|||+|||++|+++++..+... ..+.+++|++|+++|+.|+.+.++++.... +..+.
T Consensus 80 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~ 158 (262)
T 3ly5_A 80 IQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH-VHTYG 158 (262)
T ss_dssp HHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTC-CSCEE
T ss_pred HHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhc-CceEE
Confidence 4899999999999999999999999999999888755331 123479999999999999999999988765 77888
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC-CcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEE
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDK-DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVM 155 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i 155 (356)
.+.|+.........+..+ .+|+|+||+.+...+... ...+.++++||+||||++.+ .++...+..+...++..+|++
T Consensus 159 ~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~-~~~~~~l~~i~~~~~~~~q~l 236 (262)
T 3ly5_A 159 LIMGGSNRSAEAQKLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILD-VGFEEELKQIIKLLPTRRQTM 236 (262)
T ss_dssp EECSSSCHHHHHHHHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHH-TTCHHHHHHHHHHSCSSSEEE
T ss_pred EEECCCCHHHHHHHhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhh-hhHHHHHHHHHHhCCCCCeEE
Confidence 999988877766666655 699999999999877654 36678899999999999987 578899999999998899999
Q ss_pred EEEecCccchHHHHHhhcCCCe
Q 018420 156 MFSATLSKEIRPVCKKFMQDPM 177 (356)
Q Consensus 156 ~~SaT~~~~~~~~~~~~~~~~~ 177 (356)
++|||+++.+..+.+..+.++.
T Consensus 237 ~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 237 LFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp EECSSCCHHHHHHHHHHCSSCC
T ss_pred EEEecCCHHHHHHHHHHcCCCC
Confidence 9999999999999888877653
No 74
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.1e-29 Score=206.70 Aligned_cols=183 Identities=26% Similarity=0.410 Sum_probs=146.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-CCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
+|.++++.+.+++++++.+|||+|||++|+++++..+... ..+.+++|++|+++|+.|+.++++++.... ++.+..+.
T Consensus 55 ~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~ 133 (245)
T 3dkp_A 55 IQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIH 133 (245)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCC
T ss_pred HHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEe
Confidence 4899999999999999999999999999999988776542 234479999999999999999999987765 67777777
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcC--CcccCCccEEEEecccccccc--ccchhHHHHHHhhC-CCCCcE
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDK--DLSLKNVRHFILDECDKMLES--LDMRRDVQEIFKMT-PHDKQV 154 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~viiDE~H~~~~~--~~~~~~~~~~~~~~-~~~~~~ 154 (356)
++..............++|+|+||+.+..++... ...+.+++++|+||||++.++ .++...+..+.... +...++
T Consensus 134 ~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 213 (245)
T 3dkp_A 134 KAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRR 213 (245)
T ss_dssp HHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEE
T ss_pred cCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEE
Confidence 6543332222223345699999999999988765 466889999999999999764 36677777776654 457899
Q ss_pred EEEEecCccchHHHHHhhcCCCeEEEeccc
Q 018420 155 MMFSATLSKEIRPVCKKFMQDPMEIYVDDE 184 (356)
Q Consensus 155 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 184 (356)
+++|||+++.+..++..++.+|..+.+...
T Consensus 214 ~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 214 AMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp EEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred EEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999999999999988876543
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=4.8e-27 Score=182.10 Aligned_cols=155 Identities=35% Similarity=0.616 Sum_probs=142.5
Q ss_pred cccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCC
Q 018420 189 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNK 268 (356)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 268 (356)
...+.+.+.......+...+..++.....+++||||++.+.+..+++.|...+..+..+||++++.+|..+++.|++|+.
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 86 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEY 86 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 44567788888888899999999988888899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCccc
Q 018420 269 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 344 (356)
Q Consensus 269 ~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (356)
+|||+|+++++|+|+|++++||++++|++..+|.||+||+||.|++|.+++++.+ .+...++.+++.+..+++.+
T Consensus 87 ~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~~~~ 161 (163)
T 2hjv_A 87 RYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTA-FEKRFLADIEEYIGFEIQKI 161 (163)
T ss_dssp SEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECG-GGHHHHHHHHHHHTSCCEEC
T ss_pred eEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecH-HHHHHHHHHHHHHCCCcCcc
Confidence 9999999999999999999999999999999999999999999999999999984 56777888888877776543
No 76
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=6.2e-27 Score=181.97 Aligned_cols=158 Identities=41% Similarity=0.738 Sum_probs=139.3
Q ss_pred cceEEEEEcChhH-HHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCc
Q 018420 191 GLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKR 269 (356)
Q Consensus 191 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 269 (356)
.+.+.+....... +...+..+++....+++||||++.+.+..++..|...+..+..+||++++.+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 3456676666666 888999999888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcccCcccc
Q 018420 270 ILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQID 349 (356)
Q Consensus 270 vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (356)
|||+|+++++|+|+|++++||+++.|++..+|.||+||+||.|+.|.+++++. ..+...++.+++.+...++++|.++.
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT-NEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE-TTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEc-chHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999988 45677788899999999998887653
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=188.03 Aligned_cols=176 Identities=29% Similarity=0.498 Sum_probs=143.6
Q ss_pred hcCCCeEEEeccccccccccceEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCC
Q 018420 172 FMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 251 (356)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 251 (356)
++.+|..+.+.... .....+.+.+.......+...+..++.... +++||||++.+.+..+++.|...+..+..+||++
T Consensus 11 ~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~ 88 (191)
T 2p6n_A 11 VDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGK 88 (191)
T ss_dssp ------------------CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTS
T ss_pred ccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 45566665554332 345667788888888888888888887754 6899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHH
Q 018420 252 SQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILN 331 (356)
Q Consensus 252 ~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~ 331 (356)
++.+|.++++.|++|+.+|||+|+++++|+|+|++++||++++|++...|+||+||+||.|+.|.+++++.+..+....+
T Consensus 89 ~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~ 168 (191)
T 2p6n_A 89 DQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLM 168 (191)
T ss_dssp CHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHH
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777888889
Q ss_pred HHHHHhcccCcccCcccc
Q 018420 332 QVQARFEVDIKELPEQID 349 (356)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ 349 (356)
.+++.+.....++|..+.
T Consensus 169 ~l~~~l~~~~~~~p~~l~ 186 (191)
T 2p6n_A 169 DLKALLLEAKQKVPPVLQ 186 (191)
T ss_dssp HHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHccCcCCHHHH
Confidence 999988888888886653
No 78
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=1.2e-25 Score=207.80 Aligned_cols=123 Identities=21% Similarity=0.167 Sum_probs=101.4
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG 80 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~ 80 (356)
+|..+++.+.+|+ +..+.||+|||+++.++++.....+. .+++++|++.|+.|.++.+..+...+ ++++..+.|
T Consensus 83 VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~---qv~VvTPTreLA~Qdae~m~~l~~~l-GLsv~~i~G 156 (997)
T 2ipc_A 83 VQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGK---GVHVVTVNDYLARRDAEWMGPVYRGL-GLSVGVIQH 156 (997)
T ss_dssp HHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCS---CCEEEESSHHHHHHHHHHHHHHHHTT-TCCEEECCT
T ss_pred HHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCC---CEEEEeCCHHHHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence 4888999999998 99999999999999999864433332 68999999999999999999998887 899999999
Q ss_pred CcchHHhHHHHhcCCCcEEEechHHH-HHHHhcCC------cccC---CccEEEEecccccc
Q 018420 81 GVNIKIHKDLLKNECPQIVVGTPGRI-LALARDKD------LSLK---NVRHFILDECDKML 132 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~v~T~~~l-~~~~~~~~------~~~~---~~~~viiDE~H~~~ 132 (356)
+.+........ . ++|+|+||..| +.+++... ..++ .+.++|+||+|.+.
T Consensus 157 g~~~~~r~~ay--~-~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 157 ASTPAERRKAY--L-ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TCCHHHHHHHH--T-SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred CCCHHHHHHHc--C-CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 88754333322 2 59999999999 77776552 4567 89999999999986
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.5e-26 Score=181.62 Aligned_cols=157 Identities=30% Similarity=0.591 Sum_probs=139.6
Q ss_pred cccceEEEEEcChhH-HHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCC
Q 018420 189 LHGLVQHYIKLSELE-KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGN 267 (356)
Q Consensus 189 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 267 (356)
...+.+.+..++... +...+..++.....+++||||++++.+..++..|.+.+..+..+||++++.+|..+++.|++|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~ 84 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK 84 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 456778888877655 8889999998888899999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEcCccccCCCCCCCCEEEEecCC------CChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccC
Q 018420 268 KRILVATDLVGRGIDIERVNIVINYDMP------DSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDI 341 (356)
Q Consensus 268 ~~vlv~t~~~~~G~d~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (356)
.+|||+|+++++|+|+|++++||+++.| .+..+|+||+||+||.|+.|.+++++.+ .+...++.+++.++..+
T Consensus 85 ~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~-~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 85 EKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEV-DELPSLMKIQDHFNSSI 163 (175)
T ss_dssp CSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECG-GGHHHHHHHHHHHTCCC
T ss_pred CeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEcc-chHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999 8999999999999999999999999985 45777888888888888
Q ss_pred cccCc
Q 018420 342 KELPE 346 (356)
Q Consensus 342 ~~~~~ 346 (356)
++++.
T Consensus 164 ~~~~~ 168 (175)
T 2rb4_A 164 KQLNA 168 (175)
T ss_dssp EEECS
T ss_pred cccCC
Confidence 77763
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=182.63 Aligned_cols=161 Identities=32% Similarity=0.536 Sum_probs=132.3
Q ss_pred ccccceEEEEEcChhHHHHHHHHHHhcc-CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcC
Q 018420 188 TLHGLVQHYIKLSELEKNRKLNDLLDAL-DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEG 266 (356)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 266 (356)
....+.+.+..+....+...+..++... ..+++||||+++..+..++..|...+..+..+||++++.+|..+++.|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 3456778888888888888888888876 578999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcccCc
Q 018420 267 NKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE 346 (356)
Q Consensus 267 ~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (356)
+.+|||+|+++++|+|+|++++||++++|++..+|.||+||+||.|+.|.+++++.+ .+....+.+.+.+....+++|+
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~ 174 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE-RNINITKDLLDLLVEAKQEVPS 174 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECG-GGGGGHHHHHHHHHHTTCCCCH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEch-hhHHHHHHHHHHHHhccCCCCH
Confidence 999999999999999999999999999999999999999999999999999999985 5667778888888888888886
Q ss_pred ccc
Q 018420 347 QID 349 (356)
Q Consensus 347 ~~~ 349 (356)
.+.
T Consensus 175 ~l~ 177 (185)
T 2jgn_A 175 WLE 177 (185)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=3.2e-25 Score=207.73 Aligned_cols=108 Identities=24% Similarity=0.370 Sum_probs=102.2
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecC-
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM- 294 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~- 294 (356)
.+.++||||+++..++.+++.|.+.++++..+||++++.+|.++++.|+.|+++|||||+++++|+|+|.+++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhhhhhccccccCCCCcceEEEEEccC
Q 018420 295 ----PDSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 295 ----~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
|.|..+|+||+||+||.+ .|.++++++..
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~ 550 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRV 550 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSC
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCC
Confidence 889999999999999985 78888888754
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=7.5e-25 Score=205.09 Aligned_cols=108 Identities=23% Similarity=0.383 Sum_probs=102.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCCCCEEEEecC-
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDM- 294 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~~~~vi~~~~- 294 (356)
.+.++||||++...++.+++.|.+.|+++..+||++++.+|.++++.|++|+++|||+|+++++|+|+|++++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhhhhhccccccCCCCcceEEEEEccC
Q 018420 295 ----PDSADTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 295 ----~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
|.|..+|+||+||+||. ..|.+++++++.
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~ 556 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKI 556 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSC
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCC
Confidence 89999999999999998 689999988854
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=1.1e-25 Score=181.87 Aligned_cols=152 Identities=27% Similarity=0.497 Sum_probs=137.3
Q ss_pred eEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEE
Q 018420 193 VQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 272 (356)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv 272 (356)
...........+...+..++....++++||||++++.++.+++.|...+..+..+||++++.+|..+++.|++|+.+|||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlv 86 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLV 86 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEE
Confidence 34456667778889999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcccC
Q 018420 273 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 345 (356)
Q Consensus 273 ~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (356)
||+++++|+|+|++++||+++.|++...|.||+||+||.|++|.+++++.+ .+...++.+++.+...++.++
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~ 158 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRRFKRVN 158 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECG-GGHHHHHHHHHHHSSCCEECC
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEch-hHHHHHHHHHHHhcCcCeecC
Confidence 999999999999999999999999999999999999999999999999985 567778888888887776665
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=9.8e-25 Score=184.24 Aligned_cols=152 Identities=28% Similarity=0.503 Sum_probs=135.5
Q ss_pred eEEEEEcChhHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEE
Q 018420 193 VQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV 272 (356)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv 272 (356)
.+.+.......+...+..++.....+++||||++++.++.+++.|...+..+..+||++++.+|..+++.|++|+.+|||
T Consensus 4 ~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLV 83 (300)
T 3i32_A 4 EEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLV 83 (300)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEE
T ss_pred EEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEE
Confidence 45667777788889999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcccC
Q 018420 273 ATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 345 (356)
Q Consensus 273 ~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (356)
||+++++|+|+|++++||+++.|++...|.||+||+||.|++|.++.++.+ .+...++.+++.+...++.++
T Consensus 84 aT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~-~e~~~~~~ie~~~~~~~~~~~ 155 (300)
T 3i32_A 84 ATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGP-RERRDVEALERAVGRRFKRVN 155 (300)
T ss_dssp ECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECS-STHHHHHHHHHHHTCCCEECC
T ss_pred EechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeCh-HHHHHHHHHHHHhCCcceEeC
Confidence 999999999999999999999999999999999999999999999999985 667778888888887777655
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=1.1e-26 Score=181.50 Aligned_cols=152 Identities=38% Similarity=0.547 Sum_probs=134.0
Q ss_pred eEEEEEcCh-hHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEE
Q 018420 193 VQHYIKLSE-LEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRIL 271 (356)
Q Consensus 193 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vl 271 (356)
.+.+...+. ..+...+..+++....+++||||++++.+..+++.|...+..+..+||++++.+|..+++.|++|+.+||
T Consensus 5 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vL 84 (170)
T 2yjt_D 5 HQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVL 84 (170)
Confidence 344555555 5667777777777777899999999999999999999999999999999999999999999999999999
Q ss_pred EEcCccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhcccCcccC
Q 018420 272 VATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP 345 (356)
Q Consensus 272 v~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (356)
|+|+++++|+|+|++++||+++.|++...|.||+||+||.|+.|.+++++.. .+...++.+++.+...++..+
T Consensus 85 vaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 85 VATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEA-HDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 9999999999999999999999999999999999999999999999999885 466677788877777766554
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.90 E-value=2.6e-23 Score=191.06 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=68.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEE--EcCccccCCCCCC----CCEE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILV--ATDLVGRGIDIER----VNIV 289 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv--~t~~~~~G~d~~~----~~~v 289 (356)
..++++||+++...++.+++.+.. .....++.. ..+.++++.|+.+. .||+ +|..+++|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~---~~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG---IPVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT---SCEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc---CceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 457899999999999999888764 334455543 46778899998864 5777 7799999999997 7899
Q ss_pred EEecCCCC-h-----------------------------hhhhhccccccCCCCcceEEEEEcc
Q 018420 290 INYDMPDS-A-----------------------------DTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 290 i~~~~~~s-~-----------------------------~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
|+++.|.. + ..+.|.+||+.|...+..++++.+.
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 99998741 1 2346999999998777777777774
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=8.4e-24 Score=172.32 Aligned_cols=157 Identities=20% Similarity=0.222 Sum_probs=109.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC---CCCeeEEEEcCchHHHHH-HHHHHHHHhccCCCceEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTRELAYQ-ICHEFERFSTYLPDIKVA 76 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~vlii~P~~~l~~q-~~~~~~~~~~~~~~~~v~ 76 (356)
.|.++++.+.+++++++.+|||+|||++++.++...+... ....+++|++|+++|+.| +.+.++.+... ++.+.
T Consensus 37 ~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~--~~~v~ 114 (216)
T 3b6e_A 37 YQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK--WYRVI 114 (216)
T ss_dssp HHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT--TSCEE
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc--CceEE
Confidence 3899999999999999999999999999988877654321 122379999999999999 77888887654 67888
Q ss_pred EEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCC------cccCCccEEEEeccccccccccchhHHHHHHhhC--
Q 018420 77 VFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKD------LSLKNVRHFILDECDKMLESLDMRRDVQEIFKMT-- 148 (356)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~------~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~-- 148 (356)
.+.|+............ .++|+|+||+.+...+.... ..+..+++||+||||++.....+...+..+....
T Consensus 115 ~~~g~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 193 (216)
T 3b6e_A 115 GLSGDTQLKISFPEVVK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLK 193 (216)
T ss_dssp ECCC---CCCCHHHHHH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHHHHHH
T ss_pred EEeCCcccchhHHhhcc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHHHhcc
Confidence 88887655443333332 25899999999998877643 5567899999999999976323333333332211
Q ss_pred -----------CCCCcEEEEEec
Q 018420 149 -----------PHDKQVMMFSAT 160 (356)
Q Consensus 149 -----------~~~~~~i~~SaT 160 (356)
.+..+++++|||
T Consensus 194 ~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 194 NNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHTTCCCCCCCEEEEEECC
T ss_pred cccccccccCCCCcceEEEeecC
Confidence 256789999998
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.88 E-value=6.7e-21 Score=175.73 Aligned_cols=299 Identities=13% Similarity=0.111 Sum_probs=183.7
Q ss_pred hHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchH--
Q 018420 8 QAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIK-- 85 (356)
Q Consensus 8 ~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 85 (356)
++..++++++.+|||+|||++++++++.. ..+++|++||++|..|+.+++..+.... ++++..+.|..++.
T Consensus 18 ~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~~v~i~~pt~~l~~q~~~~~~~l~~~~-~~~~~~l~gr~~~c~~ 90 (551)
T 3crv_A 18 GLRNNFLVALNAPTGSGKTLFSLLVSLEV------KPKVLFVVRTHNEFYPIYRDLTKIREKR-NITFSFLVGKPSSCLY 90 (551)
T ss_dssp HHHTTCEEEEECCTTSSHHHHHHHHHHHH------CSEEEEEESSGGGHHHHHHHHTTCCCSS-CCCEEECCCHHHHCTT
T ss_pred HHHcCCcEEEECCCCccHHHHHHHHHHhC------CCeEEEEcCCHHHHHHHHHHHHHHhhhc-CccEEEEccccccCcC
Confidence 45568999999999999999999999882 2389999999999999999888776554 67777777644320
Q ss_pred -------------------------------HhHH-----------------HHhcCCCcEEEechHHHHHHHhcCCccc
Q 018420 86 -------------------------------IHKD-----------------LLKNECPQIVVGTPGRILALARDKDLSL 117 (356)
Q Consensus 86 -------------------------------~~~~-----------------~~~~~~~~i~v~T~~~l~~~~~~~~~~~ 117 (356)
...+ ......++|+|+||..++....+....+
T Consensus 91 ~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~ 170 (551)
T 3crv_A 91 AEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDI 170 (551)
T ss_dssp BCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCC
T ss_pred chhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCC
Confidence 0000 0111236999999999988654443332
Q ss_pred -CCccEEEEecccccccccc------------------------------------------------------chhH--
Q 018420 118 -KNVRHFILDECDKMLESLD------------------------------------------------------MRRD-- 140 (356)
Q Consensus 118 -~~~~~viiDE~H~~~~~~~------------------------------------------------------~~~~-- 140 (356)
....++|+||||++.+ .. +...
T Consensus 171 ~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 249 (551)
T 3crv_A 171 DLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIKVENVPKLSKEELE 249 (551)
T ss_dssp CSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEECSCCCCCCHHHHH
T ss_pred CcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccChHHHHHHHH
Confidence 4667899999999864 10 0000
Q ss_pred --------------------------HH----HHH------------------------hhCCCC-CcEEEEEecCccch
Q 018420 141 --------------------------VQ----EIF------------------------KMTPHD-KQVMMFSATLSKEI 165 (356)
Q Consensus 141 --------------------------~~----~~~------------------------~~~~~~-~~~i~~SaT~~~~~ 165 (356)
+. .+. ..+... ..+|++|||+.+ .
T Consensus 250 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~svIltSaTL~~-~ 328 (551)
T 3crv_A 250 ILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNELSIILMSGTLPP-R 328 (551)
T ss_dssp HHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTCEEEEEESSCCC-H
T ss_pred HHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCceEEEEeeCCCc-H
Confidence 00 000 011122 679999999986 3
Q ss_pred HHHHHhhcCCC-eEE----EeccccccccccceEEEEE-cC--h----hHHHHHHH----HHHhccCCCeEEEEecchhh
Q 018420 166 RPVCKKFMQDP-MEI----YVDDEAKLTLHGLVQHYIK-LS--E----LEKNRKLN----DLLDALDFNQVVIFVKSVSR 229 (356)
Q Consensus 166 ~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~-~~--~----~~~~~~~~----~~~~~~~~~~~ivf~~~~~~ 229 (356)
. .....++-+ ... ........ ..+..-.... .+ . ......+. .++.. .+++++||+++...
T Consensus 329 ~-~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~-~~g~~lvlF~Sy~~ 405 (551)
T 3crv_A 329 E-YMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ-AKANVLVVFPSYEI 405 (551)
T ss_dssp H-HHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-CSSEEEEEESCHHH
T ss_pred H-HHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-CCCCEEEEecCHHH
Confidence 3 333344433 211 11111111 1111111111 11 0 11122222 22332 45789999999999
Q ss_pred HHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEc--CccccCCCCC-----CCCEEEEecCCCC-----
Q 018420 230 AAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT--DLVGRGIDIE-----RVNIVINYDMPDS----- 297 (356)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t--~~~~~G~d~~-----~~~~vi~~~~~~s----- 297 (356)
++.+++. .+..+..-..+++. .+.++.|+.+.-.||+++ ...++|+|+| .+..||+.+.|..
T Consensus 406 l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~ 479 (551)
T 3crv_A 406 MDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDY 479 (551)
T ss_dssp HHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHH
T ss_pred HHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHH
Confidence 9998862 33333322223343 445667754444799998 6999999999 3788998886541
Q ss_pred ----------------h---------hhhhhccccccCCCCcceEEEEEccC
Q 018420 298 ----------------A---------DTYLHRVGRAGRFGTKGLAITFVSSA 324 (356)
Q Consensus 298 ----------------~---------~~~~Q~~GR~~R~~~~~~~~~~~~~~ 324 (356)
. ..+.|.+||+.|..++..++++.+..
T Consensus 480 ~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 480 LKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp HHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 1 11359999999988887888888753
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.86 E-value=5.3e-22 Score=168.13 Aligned_cols=148 Identities=15% Similarity=0.183 Sum_probs=113.7
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|.++++.+.++++.++++|||+|||.+++..+...+..+. .+++|++|+++|+.||.++++++.... ...+..+.++
T Consensus 118 Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~~lil~Pt~~L~~q~~~~l~~~~~~~-~~~~~~~~~~ 194 (282)
T 1rif_A 118 QKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLFS-HAMIKKIGGG 194 (282)
T ss_dssp HHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEECSSHHHHHHHHHHHHHHTSCC-GGGEEECSTT
T ss_pred HHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhcccc-cceEEEEeCC
Confidence 8899999988888999999999999998777666543222 279999999999999999999885443 5567777776
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
..... ......+|+|+|++.+... ....+..+++||+||||++.+ ..+..+...+....+++++||||
T Consensus 195 ~~~~~----~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~-----~~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 195 ASKDD----KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSSTT----CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH-----HHHHHHTTTCTTCCEEEEECSSC
T ss_pred Ccchh----hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc-----ccHHHHHHHhhcCCeEEEEeCCC
Confidence 54322 1113369999999987542 223467889999999999864 36667777776789999999999
Q ss_pred ccc
Q 018420 162 SKE 164 (356)
Q Consensus 162 ~~~ 164 (356)
++.
T Consensus 263 ~~~ 265 (282)
T 1rif_A 263 RDG 265 (282)
T ss_dssp CTT
T ss_pred CCc
Confidence 765
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=159.35 Aligned_cols=164 Identities=18% Similarity=0.218 Sum_probs=115.7
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCC--CCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP--GQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVF 78 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~--~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~ 78 (356)
+|.++++.+.+++++++.||||||||+++..+++....... ...++++++|+++++.|+.+++....+...+..++.-
T Consensus 65 ~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~ 144 (235)
T 3llm_A 65 FESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYS 144 (235)
T ss_dssp GHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEE
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEe
Confidence 47889999999999999999999999877766665433222 2347999999999999999988876554334445443
Q ss_pred EcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccch-hHHHHHHhhCCCCCcEEEE
Q 018420 79 YGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMR-RDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 157 (356)
...... ......+|+|+||+.+...+.. .++++++||+||+|...-..++. ..+..+.... ++.|++++
T Consensus 145 ~~~~~~------~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~ 214 (235)
T 3llm_A 145 VRFESI------LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLM 214 (235)
T ss_dssp ETTEEE------CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEE
T ss_pred echhhc------cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEE
Confidence 221111 1112368999999999998776 36899999999999852224444 3455555554 46889999
Q ss_pred EecCccchHHHHHhhcCCC
Q 018420 158 SATLSKEIRPVCKKFMQDP 176 (356)
Q Consensus 158 SaT~~~~~~~~~~~~~~~~ 176 (356)
|||++... +...+...|
T Consensus 215 SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 215 SATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp ECSSCCHH--HHHHTTSCC
T ss_pred ecCCCHHH--HHHHcCCCC
Confidence 99998764 444444444
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.84 E-value=3.3e-20 Score=172.38 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=72.9
Q ss_pred CCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEc--CccccCCCCCC--CCEEEEe
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVAT--DLVGRGIDIER--VNIVINY 292 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t--~~~~~G~d~~~--~~~vi~~ 292 (356)
+++++||+++...++.+++.++. .... ...+++..++..+++.|+ ++-.||+++ ..+++|+|+|+ +..||+.
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~ 523 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILA 523 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEES
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEE
Confidence 46799999999999999888862 2222 334445668889999999 888899998 48999999997 7799998
Q ss_pred cCCCC-----------------------------hhhhhhccccccCCCCcceEEEEEcc
Q 018420 293 DMPDS-----------------------------ADTYLHRVGRAGRFGTKGLAITFVSS 323 (356)
Q Consensus 293 ~~~~s-----------------------------~~~~~Q~~GR~~R~~~~~~~~~~~~~ 323 (356)
+.|.. ...+.|.+||+.|..++..++++.+.
T Consensus 524 ~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 524 GLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred cCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 87742 11236999999998888888888875
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.82 E-value=1.1e-19 Score=149.28 Aligned_cols=134 Identities=19% Similarity=0.182 Sum_probs=103.0
Q ss_pred CccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCce-EEEEE
Q 018420 1 MQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIK-VAVFY 79 (356)
Q Consensus 1 ~Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~-v~~~~ 79 (356)
.|.++++.+.+++++++++|||+|||.+++.++... ..++++++|+++|+.||.+++.++ +.. +..+.
T Consensus 97 ~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~-----~~~~v~~~~ 165 (237)
T 2fz4_A 97 YQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-----GEEYVGEFS 165 (237)
T ss_dssp HHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG-----CGGGEEEES
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC-----CCCeEEEEe
Confidence 388999999999899999999999999987776654 127999999999999999988773 566 78887
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
|+... ..+|+|+|++.+...... ....+++||+||+|++.. .. +..+...++ ..+++++||
T Consensus 166 g~~~~----------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~-~~----~~~i~~~~~-~~~~l~LSA 226 (237)
T 2fz4_A 166 GRIKE----------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPA-ES----YVQIAQMSI-APFRLGLTA 226 (237)
T ss_dssp SSCBC----------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCT-TT----HHHHHHTCC-CSEEEEEEE
T ss_pred CCCCC----------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCC-hH----HHHHHHhcc-CCEEEEEec
Confidence 76542 258999999998765542 124589999999999865 22 334444443 567999999
Q ss_pred cCccc
Q 018420 160 TLSKE 164 (356)
Q Consensus 160 T~~~~ 164 (356)
||...
T Consensus 227 Tp~r~ 231 (237)
T 2fz4_A 227 TFERE 231 (237)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 99764
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.78 E-value=1.8e-18 Score=144.32 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhC-CCCeEEEecCCCHHHHHHHHHHhhcC-CCc-EEEEcC
Q 018420 201 ELEKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVEC-NFPSICIHSGMSQEERLTRYKGFKEG-NKR-ILVATD 275 (356)
Q Consensus 201 ~~~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~-vlv~t~ 275 (356)
...|...+..++... .+.++||||+....+..+...|... |+.+..+||+++..+|.++++.|+++ +++ +|++|+
T Consensus 94 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 94 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred cCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 345667777777665 6789999999999999999999985 99999999999999999999999998 677 688999
Q ss_pred ccccCCCCCCCCEEEEecCCCChhhhhhccccccCCCCcceE--EEEEccC
Q 018420 276 LVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA--ITFVSSA 324 (356)
Q Consensus 276 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~~~~--~~~~~~~ 324 (356)
++++|+|++.+++||++++||++..+.|++||++|.|+.+.+ +.++..+
T Consensus 174 ~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 174 AGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 999999999999999999999999999999999999988775 3445443
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.84 E-value=3.6e-09 Score=98.43 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=83.0
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchH--hHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAV--FVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~--~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
|++|++.++.++.+++.|++|||||.+ +++..+....... +.++++++||..++.++.+.+....... ++.....
T Consensus 154 Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~-~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~~- 230 (608)
T 1w36_D 154 QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGE-RCRIRLAAPTGKAAARLTESLGKALRQL-PLTDEQK- 230 (608)
T ss_dssp HHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSC-CCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCCC-
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcC-CCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHHHH-
Confidence 889999999999999999999999944 4444554332222 2379999999999999988877654433 2110000
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
.. .......+ ..++-.++... . +.........++++||||++.+. ...+..+....+..++++++.-
T Consensus 231 ~~--~~~~~~Ti----h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml~-----~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 231 KR--IPEDASTL----HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMID-----LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp CS--CSCCCBTT----TSCC-------------CTTSCCSCSEEEECSGGGCB-----HHHHHHHHHTCCTTCEEEEEEC
T ss_pred hc--cchhhhhh----HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhCC-----HHHHHHHHHhCCCCCEEEEEcc
Confidence 00 00000000 01111122111 0 11111122378999999999553 3466777778888888888765
Q ss_pred c
Q 018420 160 T 160 (356)
Q Consensus 160 T 160 (356)
.
T Consensus 298 ~ 298 (608)
T 1w36_D 298 R 298 (608)
T ss_dssp T
T ss_pred h
Confidence 5
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.54 E-value=5.7e-08 Score=91.34 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=49.1
Q ss_pred ccccHhhHhcCC-cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 2 QHECIPQAILGM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 2 Q~~~~~~~~~~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|.+|+..++..+ -.+|+||+|||||.+....+...+..+. +|++++||..-++++.+++...
T Consensus 194 Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~---~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 194 QKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL---KVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp HHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTC---CEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEcCchHHHHHHHHHHHhc
Confidence 788998888765 4689999999999886655555554433 7999999999999998887653
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.41 E-value=4.6e-07 Score=83.49 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=73.0
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGG 81 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~ 81 (356)
|++|+..+..++.+++.||+|+|||.+.. .++..+.... .++++++||...+..+.+.. +.....++
T Consensus 194 Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~g--~~Vl~~ApT~~Aa~~L~e~~--------~~~a~Tih-- 260 (574)
T 3e1s_A 194 QASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESLG--LEVGLCAPTGKAARRLGEVT--------GRTASTVH-- 260 (574)
T ss_dssp HHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHTT--CCEEEEESSHHHHHHHHHHH--------TSCEEEHH--
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhcC--CeEEEecCcHHHHHHhHhhh--------cccHHHHH--
Confidence 78899998888899999999999997643 3332222211 27899999998777665533 22222211
Q ss_pred cchHHhHHHHhcCCCcEEEechHHHHHH----HhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEE
Q 018420 82 VNIKIHKDLLKNECPQIVVGTPGRILAL----ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMF 157 (356)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~----~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 157 (356)
.++.. +..........++|||||++.+.. ..+..+....+...+++++
T Consensus 261 -----------------------~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~-----~~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 261 -----------------------RLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGD-----ALMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp -----------------------HHTTEETTEESCSSSSCCSCSEEEECCGGGCCH-----HHHHHHHTTSCTTCEEEEE
T ss_pred -----------------------HHHcCCcchhhhhhcccccCCEEEEcCccCCCH-----HHHHHHHHhCcCCCEEEEE
Confidence 11100 011112234678999999997743 4566667777766666665
Q ss_pred Eec
Q 018420 158 SAT 160 (356)
Q Consensus 158 SaT 160 (356)
.-.
T Consensus 313 GD~ 315 (574)
T 3e1s_A 313 GDT 315 (574)
T ss_dssp ECT
T ss_pred ecc
Confidence 443
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.39 E-value=8.2e-07 Score=83.03 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=47.4
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|.+|+..++.+...+|.||+|+|||.+....+...... . +.++++++|+...++++.+.+...
T Consensus 185 Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~-~-~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 185 QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-G-NGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp HHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS-S-SCCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc-C-CCeEEEEeCcHHHHHHHHHHHHhc
Confidence 77888888877788999999999997754433332221 1 227999999999999998887653
No 98
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.36 E-value=1.3e-05 Score=75.59 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=54.8
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCC-CCCeeEEEEcCchHHHHHHHHHHHHHhccC-CCceEEEEE
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPN-PGQVTALVLCHTRELAYQICHEFERFSTYL-PDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~-~~~~~vlii~P~~~l~~q~~~~~~~~~~~~-~~~~v~~~~ 79 (356)
|.+|+.. ....++|.|++|||||.+....+...+... ....+++++++++..+.++.+++.+..+.. .++.+.++|
T Consensus 14 Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~~v~Tfh 91 (647)
T 3lfu_A 14 QREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFH 91 (647)
T ss_dssp HHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTCEEEEHH
T ss_pred HHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCcEEEcHH
Confidence 5666652 356799999999999988766665555432 223379999999999999999998875432 245666655
Q ss_pred c
Q 018420 80 G 80 (356)
Q Consensus 80 ~ 80 (356)
+
T Consensus 92 s 92 (647)
T 3lfu_A 92 G 92 (647)
T ss_dssp H
T ss_pred H
Confidence 3
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2e-06 Score=82.32 Aligned_cols=63 Identities=13% Similarity=0.136 Sum_probs=47.7
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|.+|+..++.+...+|.||+|||||.+....+...... . +.++++++|+...++++.+++.+.
T Consensus 365 Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~-~-~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 365 QSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI-H-KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp HHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-H-CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC-C-CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 78888888877778999999999997754433322211 1 127999999999999999988764
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.32 E-value=3.4e-06 Score=80.63 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=47.2
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|.+|+..++.+...+|.||+|+|||.+....+...... .+ .++++++|+...++++.+.+...
T Consensus 361 Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~-~~-~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 361 QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-GN-GPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp HHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT-CS-SCEEEEESSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc-CC-CcEEEEcCcHHHHHHHHHHHHHh
Confidence 77888888877788999999999997754333332221 22 27999999999999988877643
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.23 E-value=2.1e-06 Score=77.37 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=39.2
Q ss_pred ccccHhhHhc----CC-cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHH
Q 018420 2 QHECIPQAIL----GM-DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 63 (356)
Q Consensus 2 Q~~~~~~~~~----~~-~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~ 63 (356)
|++|+..+.. ++ .++|.|++|||||.+... ++..+..... ..+++++|+...+..+.+.+
T Consensus 30 Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~-~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 30 QKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKF-IIEALISTGE-TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp HHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHH-HHHHHHHTTC-CCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHH-HHHHHHhcCC-ceEEEecCcHHHHHHHHhhh
Confidence 6777876643 23 889999999999976433 3333222221 26899999987766655443
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.03 E-value=8.1e-05 Score=62.37 Aligned_cols=129 Identities=12% Similarity=0.015 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcc--CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccC
Q 018420 203 EKNRKLNDLLDAL--DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRG 280 (356)
Q Consensus 203 ~~~~~~~~~~~~~--~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G 280 (356)
.|...+..++... .+.+++||++.......+.+++...+.+...+.|.....+++ -.++...+.+.|...+.|
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCT
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCC
Confidence 4555666665543 567999999999999999999999999999999885443222 124455565557766777
Q ss_pred CC-----CCCCCEEEEecCCCChhhh-hhccccccCC--C--CcceEEEEEccCCChHHHHHHHHH
Q 018420 281 ID-----IERVNIVINYDMPDSADTY-LHRVGRAGRF--G--TKGLAITFVSSASDSDILNQVQAR 336 (356)
Q Consensus 281 ~d-----~~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~--~--~~~~~~~~~~~~~~~~~~~~~~~~ 336 (356)
+| +..++.||.+|..+++..- +|.+-|+.|. | ++-.++-++..+.-++.+-.+-+.
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~~~ 249 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFGKK 249 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHHHH
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHccCC
Confidence 76 6679999999999998875 8988888886 3 344667777766555555555444
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.65 E-value=0.00014 Score=63.91 Aligned_cols=107 Identities=18% Similarity=0.127 Sum_probs=62.9
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKN 93 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 93 (356)
-.++.|++|+|||..+... +.. . +.++++|++++++.+.+.+.+. +..
T Consensus 163 v~~I~G~aGsGKTt~I~~~-~~~-----~--~~lVlTpT~~aa~~l~~kl~~~-----~~~------------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSR-VNF-----E--EDLILVPGRQAAEMIRRRANAS-----GII------------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHHH-CCT-----T--TCEEEESCHHHHHHHHHHHTTT-----SCC-------------------
T ss_pred EEEEEcCCCCCHHHHHHHH-hcc-----C--CeEEEeCCHHHHHHHHHHhhhc-----Ccc-------------------
Confidence 3589999999999764332 221 1 5699999999999887766321 100
Q ss_pred CCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 94 ECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 94 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
.....-+.|.+.++... ........+++||||+-.+.. ..+..+....+. .+++++.-+
T Consensus 211 ~~~~~~V~T~dsfL~~~--~~~~~~~~d~liiDE~sm~~~-----~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 VATKDNVRTVDSFLMNY--GKGARCQFKRLFIDEGLMLHT-----GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCCTTTEEEHHHHHHTT--TSSCCCCCSEEEEETGGGSCH-----HHHHHHHHHTTC-SEEEEEECT
T ss_pred ccccceEEEeHHhhcCC--CCCCCCcCCEEEEeCcccCCH-----HHHHHHHHhCCC-CEEEEecCc
Confidence 00133477888776421 111112478999999996522 333334444433 445554444
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.47 E-value=0.00022 Score=55.41 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCch
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 53 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~ 53 (356)
++-.++.+|+|+|||+.++-.+......+. +++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~---~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKK---KVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTC---EEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeecc
Confidence 566789999999999876544444433322 688888874
No 105
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.28 E-value=0.00046 Score=53.77 Aligned_cols=40 Identities=10% Similarity=-0.013 Sum_probs=28.2
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCch
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 53 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~ 53 (356)
.|+-.++.+|+|+|||+.++-.+.+....+. +++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~---kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQ---KIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEecc
Confidence 3556788999999999886655555543333 788888874
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00096 Score=56.32 Aligned_cols=44 Identities=2% Similarity=0.070 Sum_probs=25.5
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCcc
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 163 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~ 163 (356)
..-+|++||+|.+.. .+....+.++........-+|+.+.|+..
T Consensus 132 ~~~ii~lDE~d~l~~-q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 132 RKTLILIQNPENLLS-EKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp CEEEEEEECCSSSCC-THHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred CceEEEEecHHHhhc-chHHHHHHhcccccCCcEEEEEEecCccc
Confidence 445799999999862 33333333333322334456777888653
No 107
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.19 E-value=0.00038 Score=53.88 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
++.+++.||+|+|||..+
T Consensus 38 g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp CCEEEECCSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 678999999999999664
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.16 E-value=0.00044 Score=54.42 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=28.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
|+-.++.+|+|+|||+.++-.+.+....+. +++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccC
Confidence 344578999999999887666666554443 7899998764
No 109
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.13 E-value=0.0034 Score=54.49 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=48.6
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 71 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~ 71 (356)
|+..+..+...+-+++..+-+.|||.+....++..+...++. .++++.|+..-+..+.+.++.+....|
T Consensus 168 Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~-~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 168 QRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDK-AVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp HHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSC-EEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 666666554456689999999999977655444322223332 799999999988888888887766554
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.12 E-value=0.00026 Score=56.52 Aligned_cols=91 Identities=14% Similarity=0.081 Sum_probs=51.1
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLL 91 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 91 (356)
|.-.++.+|+|+|||+..+-.+......+. +++++.|...-. .. ....... ++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~---kVli~~~~~d~r--~~---~~i~srl-G~~~---------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV---KYLVFKPKIDTR--SI---RNIQSRT-GTSL---------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEEECCCGG--GC---SSCCCCC-CCSS----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEEeccCch--HH---HHHHHhc-CCCc----------------
Confidence 555788999999999886655555444333 688887765310 00 0111111 1100
Q ss_pred hcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccc
Q 018420 92 KNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 132 (356)
Q Consensus 92 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~ 132 (356)
..+-+.+.+.++..+.... .-...++|+|||++.+.
T Consensus 67 ----~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 ----PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred ----cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1233455566666555432 22457899999999753
No 111
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.09 E-value=0.0002 Score=67.78 Aligned_cols=77 Identities=13% Similarity=0.086 Sum_probs=55.1
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEcCchHHHHHHHHHHHHHhccC--CCceEEEE
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTYL--PDIKVAVF 78 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~--~~~~v~~~ 78 (356)
|.+|+.. .+..++|.|++|||||.+....+...+.. +-...++++++.|+..+.++.+++....+.. .++.+.++
T Consensus 7 Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~~v~Tf 84 (673)
T 1uaa_A 7 QQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTF 84 (673)
T ss_dssp HHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTSEEEEH
T ss_pred HHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCCEEEeH
Confidence 5666654 25689999999999998876555544433 2123379999999999999999998775432 24677766
Q ss_pred Ec
Q 018420 79 YG 80 (356)
Q Consensus 79 ~~ 80 (356)
|+
T Consensus 85 hs 86 (673)
T 1uaa_A 85 HT 86 (673)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 112
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.08 E-value=0.006 Score=56.61 Aligned_cols=69 Identities=16% Similarity=0.216 Sum_probs=50.0
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCC
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLP 71 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~ 71 (356)
|+..+..+...+..++..+-|+|||.+....++..+...++. .++++.|+...+..+.+.++.+....|
T Consensus 168 Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~-~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 168 QRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDK-AVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp HHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSC-EEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 666666654466789999999999977654444333333332 799999999999998888887776654
No 113
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.05 E-value=0.0027 Score=50.60 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=25.2
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
....++++||+|.+.. .....+............+|+.|..
T Consensus 101 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTA--DAQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCH--HHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3456799999998754 2334455555555555655555543
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.03 E-value=0.0014 Score=55.92 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
..++++||+|+|||..+
T Consensus 38 ~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SSEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999664
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.01 E-value=0.0021 Score=55.10 Aligned_cols=41 Identities=2% Similarity=0.129 Sum_probs=23.7
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
...+++||||+|.+.. .....+.+....-+....+|++|..
T Consensus 107 ~~~kvviIdead~l~~--~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTD--AAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp SSCEEEEESCGGGBCH--HHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred CCcEEEEECchhhcCH--HHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 4578899999998854 2223344444443334445555544
No 116
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.96 E-value=0.00061 Score=55.27 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
++.++++||+|+|||..+
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 578999999999999664
No 117
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.94 E-value=0.00055 Score=65.23 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=55.0
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEcCchHHHHHHHHHHHHHhcc-CCCceEEEEE
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTRELAYQICHEFERFSTY-LPDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~P~~~l~~q~~~~~~~~~~~-~~~~~v~~~~ 79 (356)
|.+|+.. ....++|.|++|||||.+....+...+.. +-...++++++.|+..+.++.+++....+. ..++.+.++|
T Consensus 16 Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~~v~Tfh 93 (724)
T 1pjr_A 16 QQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFH 93 (724)
T ss_dssp HHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTSEEEEHH
T ss_pred HHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCcEEeeHH
Confidence 5566654 25679999999999998876655555443 223347999999999999999999877543 1256777665
Q ss_pred c
Q 018420 80 G 80 (356)
Q Consensus 80 ~ 80 (356)
+
T Consensus 94 s 94 (724)
T 1pjr_A 94 S 94 (724)
T ss_dssp H
T ss_pred H
Confidence 4
No 118
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.83 E-value=0.0031 Score=53.16 Aligned_cols=39 Identities=10% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
...+++|+||+|.+.. .-...+.+....-++...+|+.|
T Consensus 81 ~~~kvviIdead~lt~--~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQ--QAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCH--HHHHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCH--HHHHHHHHHHhCCCCCeEEEEEE
Confidence 4578899999998854 22233455555544455455554
No 119
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.81 E-value=0.0065 Score=54.12 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.++++||+|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357999999999999664
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.80 E-value=0.0023 Score=50.92 Aligned_cols=40 Identities=13% Similarity=0.065 Sum_probs=29.7
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
|+-.++.+++|+|||..++-.+.+....+. +++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~---kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTC---CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEeecCC
Confidence 455688999999999887666666655443 7888888764
No 121
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.80 E-value=0.0053 Score=54.14 Aligned_cols=55 Identities=13% Similarity=0.372 Sum_probs=35.0
Q ss_pred CCccEEEEecccccc--ccccchhHHHHHHhhCCCCCcEEEEEecCccchHHHHHhh
Q 018420 118 KNVRHFILDECDKML--ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 172 (356)
Q Consensus 118 ~~~~~viiDE~H~~~--~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~ 172 (356)
...+++|+|++.+.. ........+..+.....+..-++.++|+........+..+
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 467889999998654 3334455566665555556667788888765544444433
No 122
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.78 E-value=0.0011 Score=49.34 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.++.+++.+|+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678899999999999653
No 123
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.74 E-value=0.0007 Score=52.41 Aligned_cols=38 Identities=13% Similarity=0.021 Sum_probs=26.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 52 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~ 52 (356)
++-.++.+|+|+|||.-.+-.+-+....+. +++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~---kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTC---CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCC---eEEEEccc
Confidence 455789999999999665555544444332 78998886
No 124
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.72 E-value=0.00091 Score=49.51 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.+.++++++|+|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 467899999999999965
No 125
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.65 E-value=0.0047 Score=45.73 Aligned_cols=39 Identities=5% Similarity=0.114 Sum_probs=24.1
Q ss_pred cEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecC
Q 018420 121 RHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATL 161 (356)
Q Consensus 121 ~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 161 (356)
+.+++||+|.+.. .....+...+.....+.++|+.|..+
T Consensus 78 g~l~ldei~~l~~--~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 78 GTLVLSHPEHLTR--EQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp SCEEEECGGGSCH--HHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred cEEEEcChHHCCH--HHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 4599999998854 33344445555555566666665543
No 126
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.59 E-value=0.0015 Score=65.93 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=48.9
Q ss_pred ccccHhhHhcCCcEEEEccCCCccchHhHHHhhcCcCCCC---CCeeEEEEcCchHHHHHHHHHHHHHh
Q 018420 2 QHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNP---GQVTALVLCHTRELAYQICHEFERFS 67 (356)
Q Consensus 2 Q~~~~~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~---~~~~vlii~P~~~l~~q~~~~~~~~~ 67 (356)
|.+++.. .+++++|.|+.|||||.+.+..++..+..+. ...+++++++|++.+..+.+++....
T Consensus 15 Q~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 15 QWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp HHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 4555544 2779999999999999887666666555432 33489999999999999999988754
No 127
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.40 E-value=0.006 Score=56.53 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=66.2
Q ss_pred ccccHhhHhc--CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEE
Q 018420 2 QHECIPQAIL--GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFY 79 (356)
Q Consensus 2 Q~~~~~~~~~--~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~ 79 (356)
|.+++..+.. ....++.|+-|.|||.+.-+.+.... . .+++..|+..-+... .++...
T Consensus 180 Q~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~-~-----~~~vtAP~~~a~~~l----~~~~~~---------- 239 (671)
T 2zpa_A 180 QQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA-G-----RAIVTAPAKASTDVL----AQFAGE---------- 239 (671)
T ss_dssp HHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS-S-----CEEEECSSCCSCHHH----HHHHGG----------
T ss_pred HHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH-h-----CcEEECCCHHHHHHH----HHHhhC----------
Confidence 6677777776 34568999999999965444443332 1 468889998755543 233211
Q ss_pred cCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 80 GGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
.+-+..|+.+.. .....+++|||||=.+.. ..+..+.... +.+++|.
T Consensus 240 -----------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp~-----pll~~ll~~~----~~v~~~t 286 (671)
T 2zpa_A 240 -----------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIPA-----PLLHQLVSRF----PRTLLTT 286 (671)
T ss_dssp -----------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSCH-----HHHHHHHTTS----SEEEEEE
T ss_pred -----------------CeEEeCchhhhh-------CcccCCEEEEEchhcCCH-----HHHHHHHhhC----CeEEEEe
Confidence 122345655431 123578899999997643 4555555533 2577777
Q ss_pred cCc
Q 018420 160 TLS 162 (356)
Q Consensus 160 T~~ 162 (356)
|..
T Consensus 287 Tv~ 289 (671)
T 2zpa_A 287 TVQ 289 (671)
T ss_dssp EBS
T ss_pred cCC
Confidence 753
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.38 E-value=0.007 Score=51.53 Aligned_cols=39 Identities=10% Similarity=0.266 Sum_probs=23.2
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
..+++++||+|.+.. ......+.......+....+|+.|
T Consensus 105 ~~~vliiDEi~~l~~-~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 105 RQKVIVIDEFDRSGL-AESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp CEEEEEEESCCCGGG-HHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCeEEEEECCcccCc-HHHHHHHHHHHHhCCCCcEEEEEe
Confidence 567899999998862 123344445554444455555543
No 129
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.36 E-value=0.0022 Score=54.25 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+.+++++||+|+|||..+
T Consensus 67 ~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356999999999999765
No 130
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.35 E-value=0.011 Score=46.46 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=15.1
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+.++++||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 67999999999999764
No 131
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.33 E-value=0.0012 Score=51.88 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=26.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
|.-.++.+|+|+|||+..+-.+.+....+. +++++-|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~---kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQ---KVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTC---CEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCC---ceEEEEeccC
Confidence 444688999999999875555544433332 6899988764
No 132
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.32 E-value=0.009 Score=50.77 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=25.0
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
....++++||+|.+.. .....+.......+....+|+.|..
T Consensus 109 ~~~~vliiDe~~~l~~--~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCH--HHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3467899999998854 2234455555555555655554433
No 133
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.27 E-value=0.018 Score=50.84 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=22.0
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEc
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 50 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~ 50 (356)
..+++.+++|+|||++....+......+. +++++.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~---kVllv~ 135 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGY---KVGVVC 135 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCC---eEEEEe
Confidence 34688999999999876544433333222 555555
No 134
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.16 E-value=0.0091 Score=52.06 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..++++||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 567999999999999764
No 135
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.007 Score=52.14 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=24.9
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEec
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSAT 160 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 160 (356)
..+++++||+|.+.. .....+.+..........+++.|..
T Consensus 133 ~~~vliiDE~~~l~~--~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 133 PYKIIILDEADSMTA--DAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp SCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECCCccCH--HHHHHHHHHHHhcCCCceEEEEeCc
Confidence 457899999998854 2334455555555555556665543
No 136
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.11 E-value=0.0074 Score=52.73 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=14.3
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999764
No 137
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.11 E-value=0.03 Score=46.21 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.1
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
+.++++||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 468999999999997643
No 138
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.08 E-value=0.012 Score=51.28 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.++++||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 456899999999999764
No 139
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.94 E-value=0.015 Score=49.52 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.++++||+|+|||..+
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 356999999999999764
No 140
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.81 E-value=0.042 Score=45.67 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
..+.++++||+|+|||..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCSEEEEESSSSSSHHHHH
T ss_pred CCCeEEEECCCCCcHHHHH
Confidence 3567999999999999764
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.74 E-value=0.048 Score=43.77 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=14.0
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999664
No 142
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.73 E-value=0.062 Score=43.92 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.++++||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999764
No 143
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.71 E-value=0.031 Score=53.34 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=66.7
Q ss_pred CCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-ccccCCCCCCCCEEEE
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVIN 291 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-~~~~G~d~~~~~~vi~ 291 (356)
+.++++.+|++..+.+.++.+.+. +.++..++|+++..++...+..+.+|+.+|+|+|. .+...+++.+++.||+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 468999999999999888777653 78999999999999999999999999999999995 4566788888888885
Q ss_pred ecCC
Q 018420 292 YDMP 295 (356)
Q Consensus 292 ~~~~ 295 (356)
-...
T Consensus 497 DEaH 500 (780)
T 1gm5_A 497 DEQH 500 (780)
T ss_dssp ESCC
T ss_pred cccc
Confidence 5433
No 144
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.69 E-value=0.013 Score=45.34 Aligned_cols=136 Identities=13% Similarity=0.073 Sum_probs=69.0
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcc-----hHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVN-----IKIH 87 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~ 87 (356)
..+++..++|.|||.+++..++..+..+. +|+++.-.+.-...-.. .+...+ ++.+.....+-. ...+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~vQF~Kg~~~~gE~---~~l~~L-~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVVQFIKGTWPNGER---NLLEPH-GVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEEESSCCSSCCHHH---HHHGGG-TCEEEECCTTCCCCGGGHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEeeCCCCCccHH---HHHHhC-CcEEEEcccccccCCCCcHHH
Confidence 46899999999999999988888887665 67777432210000000 111111 222221111100 0000
Q ss_pred HHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEEEecccccccc-ccchhHHHHHHhhCCCCCcEEEEEecCccchH
Q 018420 88 KDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLES-LDMRRDVQEIFKMTPHDKQVMMFSATLSKEIR 166 (356)
Q Consensus 88 ~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~~-~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 166 (356)
.... ...+.... ..+.-..+++||+||+-..... .--...+..++...+....+|+.+-.+++.+-
T Consensus 102 ~~~a------------~~~l~~a~-~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 102 TAAC------------MAVWQHGK-RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp HHHH------------HHHHHHHH-HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred HHHH------------HHHHHHHH-HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 0000 11111111 1122357899999999764321 12234566777776666667766666665544
Q ss_pred HH
Q 018420 167 PV 168 (356)
Q Consensus 167 ~~ 168 (356)
+.
T Consensus 169 e~ 170 (196)
T 1g5t_A 169 DL 170 (196)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 145
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.69 E-value=0.039 Score=47.46 Aligned_cols=43 Identities=12% Similarity=0.319 Sum_probs=26.8
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
.+.+++|+||+|.+. ......+.+.+...+....+|+.|..+.
T Consensus 133 ~~~~vlilDE~~~L~--~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSLT--KDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSSC--HHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccccC--HHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 356789999999853 2334455555555555666666665544
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.014 Score=49.55 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=23.3
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEe
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 159 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 159 (356)
...+||+||+|.+.. .....+.......+....+|+.|.
T Consensus 107 ~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTA--GAQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCH--HHHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCH--HHHHHHHHHHhccCCCceEEEEeC
Confidence 367899999998754 222334445555445555665553
No 147
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.65 E-value=0.03 Score=49.96 Aligned_cols=114 Identities=21% Similarity=0.120 Sum_probs=56.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH--
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD-- 89 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 89 (356)
|.-++|.|++|+|||..++-.+....... + .+++|+..-. -..|+..++.......+.-+.. .|......+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g-~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l~--~g~l~~~~~~~~~ 274 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-G-VGVGIYSLEM-PAAQLTLRMMCSEARIDMNRVR--LGQLTDRDFSRLV 274 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-C-CCEEEEESSS-CHHHHHHHHHHHHTTCCTTTCC--GGGCCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-C-CeEEEEECCC-CHHHHHHHHHHHHcCCCHHHHh--CCCCCHHHHHHHH
Confidence 55679999999999976554444433221 1 1578877542 3455665554332222111111 12122122111
Q ss_pred ----HHhcCCCcEEEe-----chHHHHHHHhcCCcccCCccEEEEeccccccc
Q 018420 90 ----LLKNECPQIVVG-----TPGRILALARDKDLSLKNVRHFILDECDKMLE 133 (356)
Q Consensus 90 ----~~~~~~~~i~v~-----T~~~l~~~~~~~~~~~~~~~~viiDE~H~~~~ 133 (356)
.+.. ..+++. |...+...+++-.. -.++++||||..+.+..
T Consensus 275 ~a~~~l~~--~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 275 DVASRLSE--APIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHT--SCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 1222 245553 34445443332111 12578899999999864
No 148
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.47 E-value=0.024 Score=50.49 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
.+++++||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36899999999999764
No 149
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.42 E-value=0.028 Score=48.12 Aligned_cols=39 Identities=18% Similarity=0.384 Sum_probs=24.9
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
...+++|+||+|.+.. .....+.+.....+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN--AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 3468899999998854 23344555666655556555544
No 150
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.24 E-value=0.013 Score=49.85 Aligned_cols=51 Identities=24% Similarity=0.160 Sum_probs=32.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|.-++|.|++|+|||..++-.+...... +.+++|++.- .-..|+..++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlE-ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLE-MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCC-CCHHHHHHHHHHH
Confidence 5568999999999997655444443332 2268887753 3355666665443
No 151
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.11 E-value=0.0092 Score=50.52 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=14.1
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
+++++||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999664
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.00 E-value=0.088 Score=44.93 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999764
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.95 E-value=0.032 Score=49.95 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 63 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~ 63 (356)
|.-++|.|++|+|||..++..+....... +.+++|+..-.. ..|+..++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSC-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCC-HHHHHHHH
Confidence 56689999999999976554444433211 115788775432 34555554
No 154
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.77 E-value=0.022 Score=49.58 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999764
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.56 E-value=0.083 Score=45.69 Aligned_cols=39 Identities=8% Similarity=0.259 Sum_probs=22.4
Q ss_pred CCccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEE
Q 018420 118 KNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFS 158 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 158 (356)
....++|+||+|.+.. .....+.......+....+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~--~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCH--HHHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcH--HHHHHHHHHHhcCCCceEEEEEe
Confidence 4467899999998743 22334444444444444444444
No 156
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=94.35 E-value=0.18 Score=45.20 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=51.5
Q ss_pred HHHHHHHhccCCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCccccCCCCCC
Q 018420 206 RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIER 285 (356)
Q Consensus 206 ~~~~~~~~~~~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~~~~G~d~~~ 285 (356)
..+...++. .+.++++.+.+...++.+.+.|.+.++........ ..+..| .|.++...+..|+.+|.
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~----------~~~~~g--~v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASDR--GRYLMIGAAEHGFVDTV 438 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG----------GGCCTT--CEEEEESCCCSCEEETT
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch----------hhcCCC--cEEEEEcccccCcccCC
Confidence 344444432 24689999999999999999999988765543220 112233 46777788899999998
Q ss_pred CCEEEEec
Q 018420 286 VNIVINYD 293 (356)
Q Consensus 286 ~~~vi~~~ 293 (356)
...+++..
T Consensus 439 ~klaVITE 446 (483)
T 3hjh_A 439 RNLALICE 446 (483)
T ss_dssp TTEEEEEH
T ss_pred CCEEEEEc
Confidence 88887654
No 157
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.26 E-value=0.068 Score=48.12 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
.+.+++.||+|+|||..+-
T Consensus 238 ~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHH
Confidence 4679999999999997643
No 158
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.24 E-value=0.11 Score=45.62 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=64.2
Q ss_pred CCCeEEEEecchhhHHHHHHHHHh---CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-cc---cCCCCCCCCE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VG---RGIDIERVNI 288 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~~---~G~d~~~~~~ 288 (356)
.+.++++.+|+++.+.++++.+.. .+.++..++|+.+..++...++.+..++.+|+|+|+. +. .-++..+++.
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 557899999999999999999998 5789999999999988888888899999999999953 21 1245557787
Q ss_pred EEEecC
Q 018420 289 VINYDM 294 (356)
Q Consensus 289 vi~~~~ 294 (356)
+|+-..
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 775443
No 159
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.95 E-value=0.29 Score=38.65 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=54.2
Q ss_pred CeEEEEecchhhHHHHHHHHHhC-----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-c-----ccCCCCCCC
Q 018420 218 NQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIERV 286 (356)
Q Consensus 218 ~~~ivf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~-----~~G~d~~~~ 286 (356)
.++++.+|+++.+.++++.+++. +.++..++|+.+.....+. +..+..+|+|+|.. + ...+++.++
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999998887764 6788889998877665443 44566789999942 2 234567778
Q ss_pred CEEEEec
Q 018420 287 NIVINYD 293 (356)
Q Consensus 287 ~~vi~~~ 293 (356)
+.+|+-.
T Consensus 160 ~~lViDE 166 (220)
T 1t6n_A 160 KHFILDE 166 (220)
T ss_dssp CEEEEES
T ss_pred CEEEEcC
Confidence 8877544
No 160
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.26 E-value=0.075 Score=55.60 Aligned_cols=41 Identities=15% Similarity=0.094 Sum_probs=29.9
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
.++.+++.+|+|+|||..+...+......+. +++++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~---~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC---cEEEEEcccc
Confidence 3788999999999999877666665554433 6788776543
No 161
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.22 E-value=0.6 Score=34.84 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=52.5
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++|+++.-++.+++.+... ++.+..++|+........ ...++...|+|+|. .+ ...+++..++
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~Gld~~~~~ 105 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-VA-----ARGIDIENIS 105 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-GG-----TTTCCCSCCS
T ss_pred cEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-hh-----hcCCchhcCC
Confidence 7999999999888888877664 778999999876554433 34456678999992 22 3456777788
Q ss_pred EEEEec
Q 018420 122 HFILDE 127 (356)
Q Consensus 122 ~viiDE 127 (356)
+||.-+
T Consensus 106 ~Vi~~~ 111 (163)
T 2hjv_A 106 LVINYD 111 (163)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 877633
No 162
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.22 E-value=0.077 Score=48.04 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=20.9
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
..+..+++.||||||||+. +-+++..+.
T Consensus 258 ~~g~~i~I~GptGSGKTTl-L~aL~~~i~ 285 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTT-LNAIMMFIP 285 (511)
T ss_dssp HTTCCEEEEESTTSSHHHH-HHHHGGGSC
T ss_pred hCCCEEEEECCCCCCHHHH-HHHHHhhCC
Confidence 4578899999999999976 344555543
No 163
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.90 E-value=0.21 Score=41.72 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=17.1
Q ss_pred CCcEEEEccCCCccchHhHHHh
Q 018420 12 GMDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~ 33 (356)
++.+++.+|+|+|||+.....+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5668899999999997654433
No 164
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.75 E-value=1.1 Score=36.11 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=53.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-c------ccCCCCC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V------GRGIDIE 284 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~------~~G~d~~ 284 (356)
.+.+++|.+|+++.+.++++.+++. +..+..++|+.+...+...+ .+..+|+|+|.. + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 4467999999999999888777664 78888899988766544332 246789999942 2 1456777
Q ss_pred CCCEEEEec
Q 018420 285 RVNIVINYD 293 (356)
Q Consensus 285 ~~~~vi~~~ 293 (356)
.++.+|+-.
T Consensus 186 ~~~~lViDE 194 (249)
T 3ber_A 186 ALKYLVMDE 194 (249)
T ss_dssp TCCEEEECS
T ss_pred ccCEEEEcC
Confidence 788877543
No 165
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.71 E-value=0.29 Score=49.13 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=64.6
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-ccccCCCCCCCCEEE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGIDIERVNIVI 290 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-~~~~G~d~~~~~~vi 290 (356)
.+.++++.+|+...+.+.++.+.+. +.++..+++..+..++...++.+..|+.+|+|+|. .+...+.+.+++.+|
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999999999888887753 57788899999999999999999999999999994 566667887887777
Q ss_pred Eec
Q 018420 291 NYD 293 (356)
Q Consensus 291 ~~~ 293 (356)
+-.
T Consensus 731 iDE 733 (1151)
T 2eyq_A 731 VDE 733 (1151)
T ss_dssp EES
T ss_pred Eec
Confidence 443
No 166
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.70 E-value=0.062 Score=43.38 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=30.9
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 64 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~ 64 (356)
.|.-+++.+|+|+|||..++..+......+. +++|+.... ...+..+++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~---~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE---PGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEEccC-CHHHHHHHHH
Confidence 3667899999999999775444443333222 577777543 2455555544
No 167
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.56 E-value=0.18 Score=48.20 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+.+|+.+|+|+|||+.+
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999764
No 168
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=92.55 E-value=0.98 Score=33.72 Aligned_cols=72 Identities=14% Similarity=0.326 Sum_probs=51.9
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++++++.-++.+++.++.. +..+..++|+........ ...++...|+|+|. .+ ...+++..++
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-~~-----~~G~d~~~~~ 100 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-LL-----ARGIDVQQVS 100 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-GG-----TTTCCCCSCS
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-hh-----hcCCCcccCC
Confidence 7999999999888888777653 678999999877554433 34456678999993 22 3456677788
Q ss_pred EEEEec
Q 018420 122 HFILDE 127 (356)
Q Consensus 122 ~viiDE 127 (356)
+||.-+
T Consensus 101 ~Vi~~~ 106 (165)
T 1fuk_A 101 LVINYD 106 (165)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 777633
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.49 E-value=2.1 Score=36.30 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
..++|.||.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57899999999999654
No 170
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=92.43 E-value=1.1 Score=34.56 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=51.5
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++|+|+++.-++.+++.++.. ++.+..++|+........ ...++...|+|+|. .+ ...+++..++
T Consensus 56 ~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-~~-----~~Gldi~~v~ 124 (191)
T 2p6n_A 56 PVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-VA-----SKGLDFPAIQ 124 (191)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-HH-----HTTCCCCCCS
T ss_pred CEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-ch-----hcCCCcccCC
Confidence 7999999999999888877664 778999999876554443 34456678999992 22 2456677788
Q ss_pred EEEE
Q 018420 122 HFIL 125 (356)
Q Consensus 122 ~vii 125 (356)
+||.
T Consensus 125 ~VI~ 128 (191)
T 2p6n_A 125 HVIN 128 (191)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7776
No 171
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.89 E-value=0.08 Score=44.57 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
+++++++||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999996643
No 172
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.80 E-value=1.8 Score=32.57 Aligned_cols=72 Identities=8% Similarity=0.126 Sum_probs=52.2
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhH---HHHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHK---DLLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++|+++.-++.+++.+... ++.+..++|+....... +...++...|+|+|. .+ ...+++..++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gldi~~~~ 101 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-LF-----GRGMDIERVN 101 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-CC-----STTCCGGGCS
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-ch-----hcCcchhhCC
Confidence 7999999999888888877664 77899999987655443 334456779999993 22 3456677778
Q ss_pred EEEEec
Q 018420 122 HFILDE 127 (356)
Q Consensus 122 ~viiDE 127 (356)
+||.-+
T Consensus 102 ~Vi~~d 107 (172)
T 1t5i_A 102 IAFNYD 107 (172)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 777633
No 173
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.70 E-value=0.087 Score=41.48 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=22.6
Q ss_pred cccHhhHhcCCcEEEEccCCCccchHh
Q 018420 3 HECIPQAILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 3 ~~~~~~~~~~~~~li~~~tGsGKT~~~ 29 (356)
..++..+..|..+.+.+|.|+|||+.+
T Consensus 13 ~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 13 KHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred HHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 456777878999999999999999654
No 174
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.62 E-value=0.17 Score=43.67 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=20.6
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
..|..+++.+|||||||+. +-.++..+.
T Consensus 173 ~~G~~i~ivG~sGsGKSTl-l~~l~~~~~ 200 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTL-MKALMQEIP 200 (361)
T ss_dssp HTTCCEEEEESSSSCHHHH-HHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHH-HHHHHhcCC
Confidence 3588999999999999975 344444444
No 175
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=91.57 E-value=0.96 Score=34.16 Aligned_cols=95 Identities=13% Similarity=0.175 Sum_probs=61.3
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HH
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LL 91 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~ 91 (356)
..+..+....|-.. +..++.... . .+++|+|+++..+..+++.+... +..+..++|+........ ..
T Consensus 11 ~~~~~~~~~~K~~~-L~~ll~~~~---~-~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 11 YYVLCEHRKDKYQA-LCNIYGSIT---I-GQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp EEEECSSHHHHHHH-HHHHHTTSC---C-SEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHH
T ss_pred EEEEcCChHhHHHH-HHHHHHhCC---C-CCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHH
Confidence 34444444345533 344444332 2 27999999999888887777653 778999999877655443 34
Q ss_pred hcCCCcEEEechHHHHHHHhcCCcccCCccEEEE
Q 018420 92 KNECPQIVVGTPGRILALARDKDLSLKNVRHFIL 125 (356)
Q Consensus 92 ~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vii 125 (356)
.++...|+|+|.- + ...+++...++||.
T Consensus 81 ~~g~~~vLvaT~~-~-----~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 81 RDGKEKVLITTNV-C-----ARGIDVKQVTIVVN 108 (175)
T ss_dssp HTTSCSEEEECCS-C-----CTTTCCTTEEEEEE
T ss_pred HcCCCeEEEEecc-h-----hcCCCcccCCEEEE
Confidence 4566799999932 1 34566777887774
No 176
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=91.45 E-value=0.38 Score=47.99 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=64.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHHh---CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-ccc---CCCCCCCCE
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVE---CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VGR---GIDIERVNI 288 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~~~---G~d~~~~~~ 288 (356)
.+.+++|.+|+++.+.++++.+.+ .++++..++|+.+..++...++.+..|+.+|+|+|+- +.. -+++.+++.
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 457899999999999999999998 4678999999999988888888999999999999953 211 144567888
Q ss_pred EEEecC
Q 018420 289 VINYDM 294 (356)
Q Consensus 289 vi~~~~ 294 (356)
+|+-..
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 875443
No 177
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=91.31 E-value=0.58 Score=42.59 Aligned_cols=59 Identities=19% Similarity=0.287 Sum_probs=54.9
Q ss_pred CCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 275 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~ 275 (356)
.+.++|.+|.++.+.+..+.|.+.++.+..+++..+..++...+..+..+..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999999888999999999999995
No 178
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.23 E-value=1.7 Score=36.70 Aligned_cols=51 Identities=10% Similarity=0.184 Sum_probs=28.2
Q ss_pred CccEEEEeccccccccccchhHHHHHHhhCCCCCcEEEEEecCccchHHHH
Q 018420 119 NVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC 169 (356)
Q Consensus 119 ~~~~viiDE~H~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 169 (356)
..+++++|.+............+..+.....+...++.+.++...+....+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~ 261 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQA 261 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHH
Confidence 456688998876432233344454444444455566677776655443333
No 179
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=91.12 E-value=1.4 Score=34.18 Aligned_cols=118 Identities=10% Similarity=0.181 Sum_probs=67.3
Q ss_pred CCeEEEEecchhhHHHHHHHHHhC-----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-----ccc-CCCCCC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----VGR-GIDIER 285 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-----~~~-G~d~~~ 285 (356)
+.++++.+|+++.+.++++.+.+. +..+..++|+.+....... + .+..+|+|+|.. +.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999988887663 5677788888776554322 2 346789999952 222 345667
Q ss_pred CCEEEEecCCC-ChhhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHhc
Q 018420 286 VNIVINYDMPD-SADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFE 338 (356)
Q Consensus 286 ~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (356)
++.+|+-.... ....+...+.+..+.-....-+++++..-.....+.++..+.
T Consensus 147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 147 VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred CCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcC
Confidence 77777543221 001122222222221122333455554555555555555543
No 180
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.01 E-value=0.23 Score=42.06 Aligned_cols=53 Identities=13% Similarity=-0.024 Sum_probs=31.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC---CCCeeEEEEcCchHH-HHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTREL-AYQICHEFE 64 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~vlii~P~~~l-~~q~~~~~~ 64 (356)
|.-+++.+|+|+|||..++..+....... ..+.+++|+.....+ .+++.+.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~ 163 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAK 163 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 56689999999999977665555433221 112268888765432 344444333
No 181
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.96 E-value=0.21 Score=42.48 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=20.5
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
..|+.+++.+|+|||||+. +-.++..+.
T Consensus 169 ~~g~~v~i~G~~GsGKTTl-l~~l~g~~~ 196 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY-IKSIMEFIP 196 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH-HHHGGGGSC
T ss_pred cCCCEEEEECCCCCCHHHH-HHHHhCCCc
Confidence 3588999999999999975 344444443
No 182
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.93 E-value=0.27 Score=41.46 Aligned_cols=52 Identities=13% Similarity=0.014 Sum_probs=33.7
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHh
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFS 67 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~ 67 (356)
|.-++|.|++|+|||..++..+......+ .+++|++-- .-..|+..++....
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLIVTA 119 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHHHHH
Confidence 56689999999999976555444444332 268888754 34556666665443
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.78 E-value=0.13 Score=40.14 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCCccchHhH
Q 018420 10 ILGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~ 30 (356)
..++.+++.|++|||||+..-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 346788999999999997753
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.74 E-value=0.13 Score=39.43 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.|+-+++.||+|+|||+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999764
No 185
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.56 E-value=0.12 Score=40.45 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=18.2
Q ss_pred hHhcCCcEEEEccCCCccchHhH
Q 018420 8 QAILGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 8 ~~~~~~~~li~~~tGsGKT~~~~ 30 (356)
++..++-+++.||+|||||+..-
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHH
Confidence 45567889999999999997643
No 186
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.55 E-value=0.13 Score=39.38 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
...++++||+|+|||..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999764
No 187
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.45 E-value=1.4 Score=36.73 Aligned_cols=21 Identities=19% Similarity=-0.021 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCccchHhHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLS 32 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~ 32 (356)
++.+.+.+++|+|||+.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~l 118 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKL 118 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 445677899999999765433
No 188
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.32 E-value=0.11 Score=40.58 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=14.4
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+.+++.+|+|+|||..+
T Consensus 59 n~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SEEEEESCGGGCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999664
No 189
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=90.32 E-value=0.54 Score=37.42 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=52.2
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC-----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-c-----ccCCCCC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIE 284 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~-----~~G~d~~ 284 (356)
.+.++++.+|+++.+.+.++.+.+. +.++..++|+.+...+...+ ...+|+|+|.- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3468999999999999999888864 56788889988876655432 25789999952 2 1345666
Q ss_pred CCCEEEEe
Q 018420 285 RVNIVINY 292 (356)
Q Consensus 285 ~~~~vi~~ 292 (356)
+++.+|+-
T Consensus 166 ~~~~lViD 173 (230)
T 2oxc_A 166 SIRLFILD 173 (230)
T ss_dssp GCCEEEES
T ss_pred cCCEEEeC
Confidence 67777643
No 190
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.26 E-value=0.12 Score=42.40 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.4
Q ss_pred hcCCcEEEEccCCCccchHh
Q 018420 10 ILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~ 29 (356)
..|..+++.+|+|||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 45667899999999999653
No 191
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=90.16 E-value=0.97 Score=34.58 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=50.6
Q ss_pred CCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHh---HHHHhcCCCcE
Q 018420 22 GMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIH---KDLLKNECPQI 98 (356)
Q Consensus 22 GsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~i 98 (356)
.+.|... +..++.... ...+++|+|+++.-++.+++.++.. ++.+..++|+...... .+....+...|
T Consensus 29 ~~~K~~~-L~~ll~~~~---~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 99 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATG---KDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPI 99 (185)
T ss_dssp GGGHHHH-HHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHHTSSSE
T ss_pred cHHHHHH-HHHHHHhcC---CCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHcCCCeE
Confidence 4567543 344444332 1227999999999888888777653 7788999987654333 23344566789
Q ss_pred EEechHHHHHHHhcCCcccCCccEEEE
Q 018420 99 VVGTPGRILALARDKDLSLKNVRHFIL 125 (356)
Q Consensus 99 ~v~T~~~l~~~~~~~~~~~~~~~~vii 125 (356)
+|+|. .+ ...+++..+++||.
T Consensus 100 LvaT~-~~-----~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 100 LVATA-VA-----ARGLDISNVKHVIN 120 (185)
T ss_dssp EEEEC------------CCCSBSEEEE
T ss_pred EEEcC-hh-----hcCCCcccCCEEEE
Confidence 99993 22 23456677777775
No 192
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=90.14 E-value=0.1 Score=52.65 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=34.9
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHH
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 65 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~ 65 (356)
-+|.|++|||||.+.+..+...+..+..+.+++++||.. ..-++.+++..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q-~TFt~~~rl~~ 53 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ-MTFLMEYELAK 53 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG-GHHHHHHHHTC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc-ccHHHHHHHHH
Confidence 378999999999887776666555444445899999976 34444444443
No 193
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=90.11 E-value=0.66 Score=42.90 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=53.7
Q ss_pred CCeEEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHh--hcCCCcEEEEcC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGF--KEGNKRILVATD 275 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f--~~~~~~vlv~t~ 275 (356)
.+.+||.+|+++.+.+..+.|.+.|+.+..++|+.+..++...+..+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 47899999999999999999999999999999999999988888877 567899999996
No 194
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=90.06 E-value=1.9 Score=33.79 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=51.9
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++|.|+++.-++.+.+.+... ++.+..++|+........ ...++..+|+|+|.- + ...+++..++
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~-~-----~~Gidi~~v~ 101 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV-A-----ARGLDIPQVD 101 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT-T-----TCSSSCCCBS
T ss_pred eEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh-h-----hcCCCCccCc
Confidence 7999999999888888877664 778999999877655443 345566789999921 1 3456777888
Q ss_pred EEEE
Q 018420 122 HFIL 125 (356)
Q Consensus 122 ~vii 125 (356)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7773
No 195
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.04 E-value=0.15 Score=44.75 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=18.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
+..++|.+|||||||+. +..++..+.
T Consensus 167 ggii~I~GpnGSGKTTl-L~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTT-LYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHH-HHHHHhhcC
Confidence 44578999999999976 344444443
No 196
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.02 E-value=0.28 Score=40.08 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.+..++++||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3578999999999999664
No 197
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.01 E-value=0.27 Score=41.63 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=31.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcC-cC-----------CCCC-CeeEEEEcCchHH-HHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQ-TE-----------PNPG-QVTALVLCHTREL-AYQICHEFER 65 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~-~~-----------~~~~-~~~vlii~P~~~l-~~q~~~~~~~ 65 (356)
|.-++|.+|+|+|||..++..+... +. .+.. ..+++|+.-...+ .+++.+.+++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~ 165 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEH 165 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999997765555432 21 1111 1478888865433 3444444443
No 198
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.99 E-value=0.14 Score=45.14 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.+|+.||+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 467999999999999764
No 199
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.85 E-value=0.12 Score=39.49 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
..+++++||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4678999999999996643
No 200
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.81 E-value=0.16 Score=39.54 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.0
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.++.+.+.||+|+|||+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999664
No 201
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.80 E-value=1.9 Score=34.52 Aligned_cols=73 Identities=15% Similarity=0.283 Sum_probs=53.2
Q ss_pred CCeEEEEecchhhHHHHHHHHHh----CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-----cc-cCCCCCCC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----VG-RGIDIERV 286 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-----~~-~G~d~~~~ 286 (356)
+.++++.+|+++.+.++++.+++ .+..+..++|+.+.......+. ...+|+|+|+- +. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE----RGVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc----CCCCEEEECHHHHHHHHHcCCCCcccc
Confidence 46799999999999988777665 3788999999988776655443 24789999942 11 24567778
Q ss_pred CEEEEec
Q 018420 287 NIVINYD 293 (356)
Q Consensus 287 ~~vi~~~ 293 (356)
+.+|+-.
T Consensus 178 ~~lViDE 184 (242)
T 3fe2_A 178 TYLVLDE 184 (242)
T ss_dssp CEEEETT
T ss_pred cEEEEeC
Confidence 8877443
No 202
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.77 E-value=0.069 Score=43.20 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=30.4
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 65 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~ 65 (356)
|.-+++.|++|+|||..++-.+.+....... +++|+.-. .-.++..+++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~--~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE--PGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC--CEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC--Cceeeccc-CCHHHHHHHHHH
Confidence 5668999999999997655444433222111 57777643 334555555543
No 203
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.75 E-value=0.12 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=18.7
Q ss_pred hhHhcCCcEEEEccCCCccchHh
Q 018420 7 PQAILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 7 ~~~~~~~~~li~~~tGsGKT~~~ 29 (356)
..+..+.++++.||+|+|||..+
T Consensus 36 ~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 36 LAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHhcCCeeEeecCchHHHHHHH
Confidence 34456889999999999999664
No 204
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.67 E-value=0.15 Score=40.22 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=24.0
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCc
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHT 52 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~ 52 (356)
.|.-+++.+|+|+|||..+...+. . .+. +++++...
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~--~~~-~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L--SGK-KVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H--HCS-EEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H--cCC-cEEEEECC
Confidence 356789999999999976554444 1 122 67777643
No 205
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.64 E-value=0.12 Score=43.94 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=18.0
Q ss_pred hHhcCCcEEEEccCCCccchHh
Q 018420 8 QAILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 8 ~~~~~~~~li~~~tGsGKT~~~ 29 (356)
.+..++++++.||+|+|||..+
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 3445789999999999999664
No 206
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.64 E-value=0.22 Score=40.66 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=14.6
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.||+|+|||+.+.
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999997754
No 207
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.63 E-value=0.18 Score=38.63 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCccchHhHH
Q 018420 12 GMDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~ 31 (356)
.+.+++.|++|||||+..-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 46789999999999977543
No 208
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.62 E-value=0.16 Score=38.76 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.1
Q ss_pred hcCCcEEEEccCCCccchHhH
Q 018420 10 ILGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~ 30 (356)
..++.+++.|++|||||+..-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 346779999999999997643
No 209
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.62 E-value=0.16 Score=44.21 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.+|+.||+|+|||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 467999999999999764
No 210
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.40 E-value=0.19 Score=39.44 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.9
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667889999999999764
No 211
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.29 E-value=0.09 Score=44.05 Aligned_cols=43 Identities=12% Similarity=-0.056 Sum_probs=29.5
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHH
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 57 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~ 57 (356)
.++|.+|+|+|||..++..+........+. +++|+..-.++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~-~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDA-VCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTC-EEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eEEEEeccchhhH
Confidence 578999999999987665555544322222 7899887666543
No 212
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.28 E-value=0.18 Score=42.30 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=16.0
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
++.+++.||+|+|||..+-
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CceEEEECCCCcCHHHHHH
Confidence 5679999999999997643
No 213
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.27 E-value=0.17 Score=44.94 Aligned_cols=44 Identities=7% Similarity=0.086 Sum_probs=28.8
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAY 57 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~ 57 (356)
...+++|.|+||+|||......+...+..+ ..++++=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g---~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRG---DRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTT---CEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCC---CcEEEEeCCCchhH
Confidence 357899999999999987422222222222 16777778777654
No 214
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.21 E-value=0.18 Score=39.09 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
++-+++.+|||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5568999999999996543
No 215
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.19 E-value=0.16 Score=42.99 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=15.6
Q ss_pred CcEEEEccCCCccchHhHHH
Q 018420 13 MDVICQAKSGMGKTAVFVLS 32 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~ 32 (356)
+.++|.||||+|||......
T Consensus 41 ~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35789999999999765433
No 216
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.17 E-value=0.2 Score=38.01 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
++.+++.|++|||||++.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999997743
No 217
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=89.15 E-value=0.47 Score=47.90 Aligned_cols=55 Identities=16% Similarity=0.060 Sum_probs=42.0
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCC---------CCCeeEEEEcCchHHHHHHHHHHHHHh
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPN---------PGQVTALVLCHTRELAYQICHEFERFS 67 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~---------~~~~~vlii~P~~~l~~q~~~~~~~~~ 67 (356)
...+|.|+.|||||.+....++..+... -....+++|+=|++-+..+.++++...
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 3459999999999988766666655421 123479999999999999999988754
No 218
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.10 E-value=2.3 Score=36.65 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=54.7
Q ss_pred CCeEEEEecchhhHHHHHHHHHhC-----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-cc-----ccCCCCCC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV-----GRGIDIER 285 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-~~-----~~G~d~~~ 285 (356)
..++++.+|+++.+.++++.+.+. +.++..++|+.+....... +..+..+|+|+|. .+ ...+++.+
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988887764 6888889998887665543 4456678999994 22 23456777
Q ss_pred CCEEEEec
Q 018420 286 VNIVINYD 293 (356)
Q Consensus 286 ~~~vi~~~ 293 (356)
++.+|+-.
T Consensus 153 ~~~vViDE 160 (391)
T 1xti_A 153 IKHFILDE 160 (391)
T ss_dssp CSEEEECS
T ss_pred cCEEEEeC
Confidence 88877543
No 219
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=89.04 E-value=0.14 Score=39.39 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.0
Q ss_pred HhcCCcEEEEccCCCccchHh
Q 018420 9 AILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~~ 29 (356)
+..|..+++.||+|||||+.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 345677899999999999764
No 220
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.03 E-value=0.27 Score=37.46 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=27.2
Q ss_pred EEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHHhc
Q 018420 15 VICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFST 68 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~~~ 68 (356)
++|.+++|||||..+.-.+.. + . +++|+.+....-..+.+++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~--~-~~~yiaT~~~~d~e~~~rI~~h~~ 48 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----A--P-QVLYIATSQILDDEMAARIQHHKD 48 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----C--S-SEEEEECCCC------CHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc----C--C-CeEEEecCCCCCHHHHHHHHHHHh
Confidence 689999999999664433322 1 1 578888766555566666665543
No 221
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.03 E-value=0.19 Score=41.93 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999764
No 222
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=89.02 E-value=0.32 Score=39.03 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=25.0
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC---CCCeeEEEEcCc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHT 52 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~vlii~P~ 52 (356)
|.-+++.+|+|+|||..+...+....... .....++++...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 56789999999999977554444322211 011257777643
No 223
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=88.99 E-value=0.14 Score=40.89 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=27.9
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFE 64 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~ 64 (356)
.|..+++.+|+|+|||..+...+......+ . +++++.... ...+..+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~-~v~~~~~~~-~~~~~~~~~~ 71 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDG--D-PCIYVTTEE-SRDSIIRQAK 71 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHT--C-CEEEEESSS-CHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCC--C-eEEEEEccc-CHHHHHHHHH
Confidence 466789999999999966443332222211 1 566665432 2334444443
No 224
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.95 E-value=2 Score=33.16 Aligned_cols=74 Identities=12% Similarity=0.161 Sum_probs=51.7
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC--CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-c----c-cCCCCCCCC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC--NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V----G-RGIDIERVN 287 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~----~-~G~d~~~~~ 287 (356)
.+.++++.+|+++.+.++++.+... ..++..++|+.+.....+.+. ...+|+|+|.. + . ..+++.+++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3467999999999999999998876 456777888876554443332 24779999941 1 1 245667788
Q ss_pred EEEEec
Q 018420 288 IVINYD 293 (356)
Q Consensus 288 ~vi~~~ 293 (356)
.+|+-.
T Consensus 147 ~iViDE 152 (207)
T 2gxq_A 147 VAVLDE 152 (207)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 877543
No 225
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.94 E-value=0.19 Score=44.40 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.+|+.||+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 367999999999999764
No 226
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.94 E-value=0.18 Score=44.32 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.+++.||+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999764
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.91 E-value=2.9 Score=36.74 Aligned_cols=36 Identities=17% Similarity=0.058 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 50 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~ 50 (356)
++.+++.+++|+|||+.....+......+ . +++++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g-~--~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKG-R--RPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTT-C--CEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-C--eEEEee
Confidence 34467889999999977544443333222 2 455554
No 228
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.86 E-value=0.14 Score=43.95 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=27.1
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELA 56 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~ 56 (356)
|.-++|.+|+|+|||..++..+......+. +++|+.....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg---~VlyId~E~s~~ 102 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGG---VAAFIDAEHALD 102 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEecccccc
Confidence 456789999999999765544443332221 678887655443
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.77 E-value=2 Score=38.63 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=21.8
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 51 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P 51 (356)
.+++++++|+|||+.+...+......+. +++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~---kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGW---KTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEec
Confidence 4778999999999775444433322222 5666654
No 230
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.69 E-value=0.22 Score=38.83 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.8
Q ss_pred hcCCcEEEEccCCCccchHh
Q 018420 10 ILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~ 29 (356)
..|.-+.+.||+|||||+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999764
No 231
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=88.67 E-value=0.22 Score=38.77 Aligned_cols=20 Identities=35% Similarity=0.298 Sum_probs=16.5
Q ss_pred hcCCcEEEEccCCCccchHh
Q 018420 10 ILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~ 29 (356)
..|.-+.+.||+|||||+..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35677889999999999764
No 232
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.60 E-value=0.21 Score=42.31 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=15.4
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
+.++++||+|+|||..+-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999997643
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.57 E-value=0.2 Score=41.81 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+.++++||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999764
No 234
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.47 E-value=0.17 Score=38.19 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.1
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.||+|||||+.+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46899999999997643
No 235
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=88.32 E-value=0.24 Score=38.62 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=17.3
Q ss_pred cEEEEccCCCccchHhHHHhhcC
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQ 36 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~ 36 (356)
-.++.|++|||||+.+...+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 46899999999998765544443
No 236
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.27 E-value=0.26 Score=37.17 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..+.+.||+|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457899999999999764
No 237
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=88.26 E-value=0.26 Score=37.81 Aligned_cols=20 Identities=25% Similarity=0.531 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCccchHhH
Q 018420 11 LGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~ 30 (356)
.+..+++.|++|||||++.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999997753
No 238
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.14 E-value=0.23 Score=42.88 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.3
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
+.+++.||+|+|||..+-
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 579999999999997643
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.13 E-value=0.26 Score=38.25 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.++-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 4677899999999999764
No 240
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.07 E-value=0.24 Score=42.66 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
..++++.||+|+|||..+-
T Consensus 51 ~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 241
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.01 E-value=0.22 Score=41.70 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccchHhHH
Q 018420 13 MDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~ 31 (356)
+-++|.||||+|||..+..
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3468899999999976443
No 242
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.89 E-value=0.26 Score=40.06 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 456899999999999764
No 243
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.88 E-value=0.17 Score=43.39 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=27.2
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
+.-+++.+++|+|||..++..+......+. +++|+.....
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~---~vlyid~E~s 102 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHA 102 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence 566899999999999776555544433222 6788876433
No 244
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.84 E-value=0.26 Score=41.20 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.++++++||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999664
No 245
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.83 E-value=0.29 Score=42.73 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=27.7
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
.+.+++|.+|||+|||...-..+......+ .+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~---~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG---SRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC---CEEEEEeCCcC
Confidence 467899999999999976544443333322 26777777655
No 246
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.75 E-value=0.24 Score=43.33 Aligned_cols=18 Identities=33% Similarity=0.342 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.+|+.||+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 367999999999999764
No 247
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=87.75 E-value=0.15 Score=38.57 Aligned_cols=20 Identities=25% Similarity=0.111 Sum_probs=16.3
Q ss_pred cCCcEEEEccCCCccchHhH
Q 018420 11 LGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~ 30 (356)
.|.-+.+.||+|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46678899999999997643
No 248
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=87.69 E-value=9 Score=35.90 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=62.6
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH---HhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++|+++.-++.+.+.+... ++.+..++|+......... ...+..+|+|+|-- -...+++..++
T Consensus 447 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~------l~~GlDip~v~ 515 (661)
T 2d7d_A 447 RVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL------LREGLDIPEVS 515 (661)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC------CSTTCCCTTEE
T ss_pred eEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch------hhCCcccCCCC
Confidence 8999999999888887777664 7788888987765544443 44466789999841 24566788889
Q ss_pred EEEEeccccccccccchhHHHHHHh
Q 018420 122 HFILDECDKMLESLDMRRDVQEIFK 146 (356)
Q Consensus 122 ~viiDE~H~~~~~~~~~~~~~~~~~ 146 (356)
+||+-|++.+..+.+....+.++..
T Consensus 516 lVi~~d~d~~G~p~s~~~~iQr~GR 540 (661)
T 2d7d_A 516 LVAILDADKEGFLRSERSLIQTIGR 540 (661)
T ss_dssp EEEETTTTCCTTTTSHHHHHHHHHT
T ss_pred EEEEeCcccccCCCCHHHHHHHhCc
Confidence 9999888765332233334444443
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=87.69 E-value=0.3 Score=38.69 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.2
Q ss_pred hcCCcEEEEccCCCccchHh
Q 018420 10 ILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~ 29 (356)
..|+-+.+.||+|+|||+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778899999999999654
No 250
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.58 E-value=0.37 Score=41.15 Aligned_cols=42 Identities=10% Similarity=-0.083 Sum_probs=27.0
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCC---CCCeeEEEEcCch
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPN---PGQVTALVLCHTR 53 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~---~~~~~vlii~P~~ 53 (356)
|.-+++.+|+|+|||..++..+....... ....+++|+....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45678999999999977665555432211 1122688887654
No 251
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.56 E-value=0.23 Score=42.57 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCch
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTR 53 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~ 53 (356)
|.-+++.+|+|+|||..++..+......+. +++|+....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~---~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGG---IAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEECCC
Confidence 566899999999999776555444433222 678877543
No 252
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=87.45 E-value=7.4 Score=36.48 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=62.4
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH---HhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++|+++.-++.+.+.+... ++.+..++|+......... +..+..+|+|+|- .+ ...+++..++
T Consensus 441 ~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-~l-----~~GlDip~v~ 509 (664)
T 1c4o_A 441 RTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-LL-----REGLDIPEVS 509 (664)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-CC-----CTTCCCTTEE
T ss_pred EEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-hh-----hcCccCCCCC
Confidence 8999999999888887777664 6788888987765544443 4556678999982 22 4566778888
Q ss_pred EEEEeccccccccccchhHHHHHHhh
Q 018420 122 HFILDECDKMLESLDMRRDVQEIFKM 147 (356)
Q Consensus 122 ~viiDE~H~~~~~~~~~~~~~~~~~~ 147 (356)
+||+=++.....+.+....+.++...
T Consensus 510 lVI~~d~d~~G~p~s~~~~iQr~GRa 535 (664)
T 1c4o_A 510 LVAILDADKEGFLRSERSLIQTIGRA 535 (664)
T ss_dssp EEEETTTTSCSGGGSHHHHHHHHGGG
T ss_pred EEEEeCCcccCCCCCHHHHHHHHCcc
Confidence 88887776543223333444444443
No 253
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.37 E-value=14 Score=33.69 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=55.6
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++|+|+++.-++.+++.+...... +..+..++|+........ ...++..+|+|+|.- ....+++..++
T Consensus 341 ~~iVF~~s~~~~~~l~~~L~~~~~~--~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~GiDip~v~ 412 (563)
T 3i5x_A 341 KAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMDFPNVH 412 (563)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCCCTTCC
T ss_pred cEEEEcCcHHHHHHHHHHHHHhccC--CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcch------hhcCCCcccCC
Confidence 8999999999999998888876432 678999999877654443 344566799999942 23567788888
Q ss_pred EEEEec
Q 018420 122 HFILDE 127 (356)
Q Consensus 122 ~viiDE 127 (356)
+||.-.
T Consensus 413 ~VI~~~ 418 (563)
T 3i5x_A 413 EVLQIG 418 (563)
T ss_dssp EEEEES
T ss_pred EEEEEC
Confidence 887544
No 254
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=87.37 E-value=1.6 Score=34.86 Aligned_cols=74 Identities=11% Similarity=0.200 Sum_probs=45.0
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-----cccc-CCCCCC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-----LVGR-GIDIER 285 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-----~~~~-G~d~~~ 285 (356)
.+.++++.+|+++.+.++++.+++. +..+..++|+.+... ....+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4468999999999999998888765 456666677654333 23345566789999993 2222 356667
Q ss_pred CCEEEEe
Q 018420 286 VNIVINY 292 (356)
Q Consensus 286 ~~~vi~~ 292 (356)
++.+|+-
T Consensus 174 ~~~lViD 180 (237)
T 3bor_A 174 IKMFVLD 180 (237)
T ss_dssp CCEEEEE
T ss_pred CcEEEEC
Confidence 7777754
No 255
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.31 E-value=0.23 Score=43.95 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.+|+.||+|+|||+.+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 467999999999999764
No 256
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=87.29 E-value=0.29 Score=42.04 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.++++||+|+|||..+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356999999999999764
No 257
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.29 E-value=0.31 Score=37.37 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
+..+++.|++|||||+..-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5568899999999997643
No 258
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=87.28 E-value=3.3 Score=27.79 Aligned_cols=51 Identities=14% Similarity=0.225 Sum_probs=44.2
Q ss_pred EEEEecchhhHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHHhhcCCCcE
Q 018420 220 VVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRI 270 (356)
Q Consensus 220 ~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~v 270 (356)
.++|.+..+....+...+++.|..+..++++.....|++-+..|.....++
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
Confidence 567888888999999999999999999999999999999999998655544
No 259
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.26 E-value=0.23 Score=43.05 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.+..+++.+|||||||+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999763
No 260
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=87.26 E-value=0.097 Score=39.73 Aligned_cols=58 Identities=7% Similarity=0.051 Sum_probs=37.0
Q ss_pred ccccHhhHhcC--CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHH
Q 018420 2 QHECIPQAILG--MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICH 61 (356)
Q Consensus 2 Q~~~~~~~~~~--~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~ 61 (356)
|..++..++.. .-.+|.++-|++||...+..++........ +|.++.|+..-.....+
T Consensus 39 ~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr--~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 39 YSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGR--EVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp HHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTC--CEEEECSTTHHHHHHSC
T ss_pred chhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCe--EEEEEcCchHHHHHHHh
Confidence 44566666543 346789999999997744444433333222 79999999865555433
No 261
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.24 E-value=0.27 Score=39.97 Aligned_cols=17 Identities=18% Similarity=0.128 Sum_probs=14.0
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.++|.||+|||||+.+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36899999999997643
No 262
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=87.12 E-value=0.48 Score=42.71 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=26.5
Q ss_pred HhcCCcEEEEccCCCccchHhHHHhhcCcC-CCCCCeeEEEEcCc
Q 018420 9 AILGMDVICQAKSGMGKTAVFVLSTLQQTE-PNPGQVTALVLCHT 52 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~~~~~~~~~~~-~~~~~~~vlii~P~ 52 (356)
+.++.+++|.++||||||.+.-..+...+. ..+...+++++=|.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 345778999999999999765443333222 23344344444444
No 263
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.09 E-value=0.28 Score=40.95 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=14.8
Q ss_pred cEEEEccCCCccchHhHHH
Q 018420 14 DVICQAKSGMGKTAVFVLS 32 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~ 32 (356)
-++|.||||+|||..+...
T Consensus 12 ~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 4678999999999765433
No 264
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=87.08 E-value=2.5 Score=34.36 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=51.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-----ccc--cCCCCC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-----LVG--RGIDIE 284 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-----~~~--~G~d~~ 284 (356)
.+.++++.+|+++.+.+.++.+++. +..+..+.|+.+.......+ ..+ .+|+|+|+ .+. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 3467999999999999998888774 56777788887766544332 333 78999994 111 246777
Q ss_pred CCCEEEEe
Q 018420 285 RVNIVINY 292 (356)
Q Consensus 285 ~~~~vi~~ 292 (356)
+++.+|+-
T Consensus 201 ~l~~lViD 208 (262)
T 3ly5_A 201 NLQCLVID 208 (262)
T ss_dssp TCCEEEEC
T ss_pred cCCEEEEc
Confidence 88887753
No 265
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.06 E-value=0.27 Score=42.20 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQT 37 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~ 37 (356)
+..+++.||||||||+. +-.++..+
T Consensus 123 ~g~i~I~GptGSGKTTl-L~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTT-LAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHH-HHHHHhcc
Confidence 45688999999999966 33343433
No 266
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=87.04 E-value=0.22 Score=38.06 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCccchHhH
Q 018420 11 LGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~ 30 (356)
.+..+++.|++|||||+.+-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568899999999997653
No 267
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.02 E-value=0.58 Score=38.55 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=18.5
Q ss_pred HhcCCcEEEEccCCCccchHhHHH
Q 018420 9 AILGMDVICQAKSGMGKTAVFVLS 32 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~~~~~ 32 (356)
+..|.-++|.+|+|+|||+.+...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHH
Confidence 345777899999999999765443
No 268
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=86.95 E-value=0.3 Score=43.65 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.4
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
+++++.||+|+|||..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999997643
No 269
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=86.89 E-value=0.34 Score=38.35 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=16.3
Q ss_pred hHhcCCcEEEEccCCCccchHh
Q 018420 8 QAILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 8 ~~~~~~~~li~~~tGsGKT~~~ 29 (356)
++..|+-+.|.||.|+|||+..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 3455777899999999999653
No 270
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.85 E-value=0.34 Score=37.14 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+-+.+.||+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999764
No 271
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.85 E-value=0.16 Score=41.60 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456899999999999764
No 272
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=86.62 E-value=0.3 Score=37.57 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.1
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+-++|+||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34789999999999753
No 273
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=86.61 E-value=3.2 Score=36.57 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=21.6
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEc
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLC 50 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~ 50 (356)
.+++.+++|+|||++....+...... +. +++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~---kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKK---KVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCC---CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC---eEEEEe
Confidence 46778999999998765444433332 22 556554
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.52 E-value=0.32 Score=36.84 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=14.1
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.|++|||||+.+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 46899999999997653
No 275
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.52 E-value=0.25 Score=39.04 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCccchHhH
Q 018420 11 LGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~ 30 (356)
+.+-+++.+|+||||++.+-
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34557889999999997643
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.48 E-value=0.32 Score=36.52 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=14.2
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.|++|||||+..-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 277
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.48 E-value=4.8 Score=34.99 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=51.5
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH---HhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++++++.-++.+++.+... +..+..++|+......... ..++..+|+|+|. .+ ...+++..++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~~-----~~Gidip~v~ 346 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-VA-----ARGLDISNVK 346 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-HH-----HTTSCCCCEE
T ss_pred eEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-hh-----hcCCCcccCC
Confidence 7999999999888888777653 7789999998775544433 3456678999994 22 3456777788
Q ss_pred EEEE
Q 018420 122 HFIL 125 (356)
Q Consensus 122 ~vii 125 (356)
+||.
T Consensus 347 ~Vi~ 350 (417)
T 2i4i_A 347 HVIN 350 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7764
No 278
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=86.39 E-value=0.42 Score=36.94 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=17.3
Q ss_pred hHhcCCcEEEEccCCCccchHh
Q 018420 8 QAILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 8 ~~~~~~~~li~~~tGsGKT~~~ 29 (356)
.+..+..+++.|++|||||+.+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3344667899999999999764
No 279
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=86.28 E-value=0.35 Score=41.87 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
..+++++||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997643
No 280
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=86.25 E-value=0.62 Score=40.56 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
.+.++++||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 281
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.24 E-value=17 Score=33.24 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=56.3
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++|+|+++.-++.+++.++..... +..+..++|+........ .+..+..+|+|+|.- ....+++..++
T Consensus 290 ~~iVF~~t~~~~~~l~~~L~~~~~~--~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~------~~~GiDip~v~ 361 (579)
T 3sqw_A 290 KAIIFAPTVKFTSFLCSILKNEFKK--DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV------GARGMDFPNVH 361 (579)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTT--TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG------GTSSCCCTTCC
T ss_pred cEEEECCcHHHHHHHHHHHHHhhcC--CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch------hhcCCCcccCC
Confidence 8999999999999999888876532 678999999877554433 344566799999942 23567788888
Q ss_pred EEEEecc
Q 018420 122 HFILDEC 128 (356)
Q Consensus 122 ~viiDE~ 128 (356)
+||.-..
T Consensus 362 ~VI~~~~ 368 (579)
T 3sqw_A 362 EVLQIGV 368 (579)
T ss_dssp EEEEESC
T ss_pred EEEEcCC
Confidence 8876543
No 282
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.17 E-value=0.19 Score=51.83 Aligned_cols=45 Identities=16% Similarity=0.051 Sum_probs=35.1
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQI 59 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~ 59 (356)
|..+.+.+|+|||||+.++..+......+. +++++.+--+|....
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~---~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHALDPIY 1475 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTSCCCHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC---eEEEEecCCCCCHHH
Confidence 567899999999999988777766665543 688888877776665
No 283
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=85.95 E-value=0.41 Score=37.17 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..+++.||+|||||+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567889999999999764
No 284
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=85.87 E-value=0.37 Score=41.42 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
.+.++++||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5679999999999997643
No 285
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.85 E-value=0.35 Score=42.92 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=32.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|.-++|.|+||+|||..++-.+......+ .+++|++-- .-..|+..++...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSlE-ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECSS-SCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEECC-CCHHHHHHHHHHH
Confidence 56689999999999977655555444332 268887753 3345555555443
No 286
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=85.84 E-value=0.43 Score=36.77 Aligned_cols=21 Identities=14% Similarity=0.025 Sum_probs=17.0
Q ss_pred hcCCcEEEEccCCCccchHhH
Q 018420 10 ILGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~ 30 (356)
..+..+++.|++|||||+.+-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 346678999999999997653
No 287
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=85.83 E-value=0.42 Score=37.37 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=16.2
Q ss_pred HhcCCcEEEEccCCCccchHh
Q 018420 9 AILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~~ 29 (356)
+..|+-+.+.+|+|+|||+.+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 455777899999999999653
No 288
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=85.82 E-value=0.39 Score=38.07 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=19.7
Q ss_pred cEEEEccCCCccchHhHHHhhcCcCCC
Q 018420 14 DVICQAKSGMGKTAVFVLSTLQQTEPN 40 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~~~~~~~~ 40 (356)
++++.+++|+|||..++..+......+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 578999999999988655555444433
No 289
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.64 E-value=0.29 Score=39.08 Aligned_cols=19 Identities=37% Similarity=0.565 Sum_probs=11.9
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.|+-+.+.||+|||||+..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999764
No 290
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=85.59 E-value=2.4 Score=33.46 Aligned_cols=74 Identities=12% Similarity=0.251 Sum_probs=48.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC---CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-c-----ccCCCCCCC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC---NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIERV 286 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~-----~~G~d~~~~ 286 (356)
.+.++++.+|+++.+.++++.+... +.++..++|+.+...+...+ . ...+|+|+|.- + ...+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4467999999999999999988874 67788888876655443332 2 34789999942 2 235567778
Q ss_pred CEEEEec
Q 018420 287 NIVINYD 293 (356)
Q Consensus 287 ~~vi~~~ 293 (356)
+.+|+-.
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8877543
No 291
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.58 E-value=0.34 Score=41.78 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=26.8
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
+.-++|.+|+|+|||..++..+......+. +++|+..-.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~---~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGG---TCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCC---eEEEEECCCC
Confidence 566889999999999776554444333222 6788776543
No 292
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=85.58 E-value=0.36 Score=36.45 Aligned_cols=18 Identities=33% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..+++.|++|||||+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556889999999999764
No 293
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=85.49 E-value=0.39 Score=37.32 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=17.0
Q ss_pred cCCcEEEEccCCCccchHhHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~ 31 (356)
.+..+++.|++|||||+..-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 466789999999999977543
No 294
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.46 E-value=0.38 Score=40.53 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.8
Q ss_pred cEEEEccCCCccchHhHH
Q 018420 14 DVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~ 31 (356)
.++|.||||+|||.....
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999976543
No 295
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=85.45 E-value=0.7 Score=42.12 Aligned_cols=44 Identities=11% Similarity=0.094 Sum_probs=28.6
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcCC-CCCCeeEEEEcCch
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTEP-NPGQVTALVLCHTR 53 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~~-~~~~~~vlii~P~~ 53 (356)
.+.-+++|.+.||||||.+....++..+.. .+...+++++=|..
T Consensus 212 ~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 212 AKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp GGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred hhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 345789999999999997755545544432 34444556655553
No 296
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=85.16 E-value=1.6 Score=34.36 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=45.6
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-c-----ccCCCCCC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----GRGIDIER 285 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~-----~~G~d~~~ 285 (356)
.+.++++.+|+++.+.++++.+.+. +..+..++|+.+....... +. ..+|+|+|.. + ...+++.+
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 4468999999999999988877763 6777888887665443322 22 3789999942 1 23556667
Q ss_pred CCEEEEec
Q 018420 286 VNIVINYD 293 (356)
Q Consensus 286 ~~~vi~~~ 293 (356)
++.+|+-.
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 77777543
No 297
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.11 E-value=2.7 Score=33.36 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=49.3
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-cc----cc--CCCCC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LV----GR--GIDIE 284 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-~~----~~--G~d~~ 284 (356)
.+.++++.+|+++.+.+.++.+... +..+..++|+.+.......+ +..+|+|+|. .+ .. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 3467999999999999998888875 46778888886655443332 4578999994 22 12 35666
Q ss_pred CCCEEEEe
Q 018420 285 RVNIVINY 292 (356)
Q Consensus 285 ~~~~vi~~ 292 (356)
+++.+|+-
T Consensus 171 ~~~~lViD 178 (236)
T 2pl3_A 171 DLQMLVLD 178 (236)
T ss_dssp TCCEEEET
T ss_pred cccEEEEe
Confidence 77777743
No 298
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.07 E-value=0.56 Score=38.00 Aligned_cols=20 Identities=30% Similarity=0.212 Sum_probs=17.1
Q ss_pred cCCcEEEEccCCCccchHhH
Q 018420 11 LGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~ 30 (356)
.++.+++.+++|+|||+..-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 38889999999999997643
No 299
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.01 E-value=0.39 Score=38.69 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCccchHhH
Q 018420 11 LGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~ 30 (356)
.|.-+.+.+|+|+|||+.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHH
Confidence 46778999999999997643
No 300
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.92 E-value=0.42 Score=39.77 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=23.8
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcC
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCH 51 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P 51 (356)
.|.-++|.||+|+|||+.+...+....... +. +++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~-~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GK-KVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CC-CEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CC-eEEEEeC
Confidence 367789999999999976543333322221 11 4666654
No 301
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.86 E-value=0.34 Score=40.21 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
.-+++.||+|||||+.+-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 347899999999997643
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=84.85 E-value=0.35 Score=37.17 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
+..+++.|++|||||+.+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4457899999999997653
No 303
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.84 E-value=0.47 Score=35.54 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=15.8
Q ss_pred CcEEEEccCCCccchHhHH
Q 018420 13 MDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~ 31 (356)
+++++.+++|||||++.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5689999999999977543
No 304
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.82 E-value=0.44 Score=40.50 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999664
No 305
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.82 E-value=0.27 Score=38.47 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=16.2
Q ss_pred HhcCCcEEEEccCCCccchHh
Q 018420 9 AILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~~ 29 (356)
+..+..+.|.|++|||||+.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 334556789999999999764
No 306
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=84.80 E-value=0.33 Score=40.69 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
...+++.||+|+|||..+
T Consensus 25 ~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TSCEEEESCTTSCHHHHH
T ss_pred CCcEEEECCCCchHHHHH
Confidence 567999999999999764
No 307
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=84.79 E-value=0.44 Score=42.36 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
.+.++++||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=84.79 E-value=0.41 Score=37.17 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..+.+.||+|||||+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 556789999999999764
No 309
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.74 E-value=0.47 Score=38.43 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+.+++.+|+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999653
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=84.55 E-value=0.5 Score=35.69 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
+.+++.+++|||||+.+-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 358899999999997653
No 311
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=84.41 E-value=7.1 Score=31.22 Aligned_cols=73 Identities=14% Similarity=0.165 Sum_probs=50.6
Q ss_pred CCeEEEEecchhhHHHHHHHHHhC----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-cc-----cCCCCCCC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVEC----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-VG-----RGIDIERV 286 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~~-----~G~d~~~~ 286 (356)
+.++++.+|+++.+.++++.+... +..+..++|+.+.......+ ....+|+|+|.. +. ..+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999988887764 56777788887655443322 246789999942 21 23567777
Q ss_pred CEEEEec
Q 018420 287 NIVINYD 293 (356)
Q Consensus 287 ~~vi~~~ 293 (356)
+.+|+-.
T Consensus 176 ~~lViDE 182 (253)
T 1wrb_A 176 KYIVLDE 182 (253)
T ss_dssp CEEEEET
T ss_pred CEEEEeC
Confidence 8777543
No 312
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.33 E-value=0.46 Score=40.03 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
..++++||+|+|||..+
T Consensus 39 ~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCEEECCTTCCCHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 67999999999999764
No 313
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.23 E-value=0.45 Score=39.84 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCccchHhHHHh
Q 018420 12 GMDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~ 33 (356)
++-+++.+|+|+|||+.....+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA 125 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLA 125 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHH
Confidence 3457899999999997654333
No 314
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=84.06 E-value=0.48 Score=40.22 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.2
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
-++|.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 47899999999997653
No 315
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.98 E-value=0.57 Score=36.99 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=15.8
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
+..+++.|++|||||+.+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999997653
No 316
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=83.90 E-value=0.69 Score=38.68 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
+..+.+.+|+|+|||+..-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4567899999999997643
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=83.88 E-value=0.5 Score=39.51 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.|+.+.|.+|+|+|||+.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp TCSEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4778899999999999653
No 318
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=83.87 E-value=0.54 Score=37.34 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=15.8
Q ss_pred cCCcEEEEccCCCccchHhH
Q 018420 11 LGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~ 30 (356)
+...+++.|++|||||+.+-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 34668999999999997753
No 319
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.85 E-value=0.47 Score=39.70 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.6
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
..++++||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999764
No 320
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=83.72 E-value=0.57 Score=35.70 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=13.5
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
.+.+.+|+|+|||+.+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999653
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.66 E-value=0.61 Score=35.52 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
..+++.+++|||||+++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358899999999997753
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=83.60 E-value=0.4 Score=36.79 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.4
Q ss_pred cEEEEccCCCccchHhHH
Q 018420 14 DVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~ 31 (356)
-+++.+|+|+|||+.+-.
T Consensus 4 ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 467899999999976433
No 323
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=83.58 E-value=0.54 Score=36.78 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=14.6
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..+.|.||+|||||+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456789999999999653
No 324
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.56 E-value=0.42 Score=40.75 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
..+++++||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999764
No 325
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=83.51 E-value=0.57 Score=36.37 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=14.9
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
+.+++.|++|||||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997643
No 326
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=83.41 E-value=0.57 Score=36.79 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.3
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.||+|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997753
No 327
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=83.36 E-value=0.4 Score=38.03 Aligned_cols=20 Identities=20% Similarity=0.029 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCccchHhHH
Q 018420 12 GMDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~ 31 (356)
|.-+.+.+|+|+|||+.+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 56688999999999976543
No 328
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=83.33 E-value=0.61 Score=35.43 Aligned_cols=21 Identities=19% Similarity=0.067 Sum_probs=12.2
Q ss_pred cCCcEEEEccCCCccchHhHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~ 31 (356)
++..+++.|++|||||+.+-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp -CCEEEEECCC----CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 355688999999999977543
No 329
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.23 E-value=0.59 Score=36.94 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
...+++.|++|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999997653
No 330
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.19 E-value=0.6 Score=36.52 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=14.4
Q ss_pred cEEEEccCCCccchHhHH
Q 018420 14 DVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~ 31 (356)
.+++.||+||||++.+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999976533
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=83.13 E-value=0.51 Score=36.84 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.0
Q ss_pred cCCcEEEEccCCCccchHhH
Q 018420 11 LGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~ 30 (356)
.+..+++.|++|||||+.+-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 34568899999999997653
No 332
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=83.09 E-value=20 Score=30.49 Aligned_cols=74 Identities=8% Similarity=0.206 Sum_probs=54.5
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++++++.-++.+++.++.. +..+..++|+........ ...++..+|+|+|. .....+++..++
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~ 313 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSE-----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTVS 313 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccCC
Confidence 7999999999888888777654 678889999877554443 34456678999994 224567788888
Q ss_pred EEEEeccc
Q 018420 122 HFILDECD 129 (356)
Q Consensus 122 ~viiDE~H 129 (356)
+||.-+.-
T Consensus 314 ~Vi~~~~p 321 (395)
T 3pey_A 314 MVVNYDLP 321 (395)
T ss_dssp EEEESSCC
T ss_pred EEEEcCCC
Confidence 88875544
No 333
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=83.08 E-value=0.6 Score=36.68 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=14.7
Q ss_pred cEEEEccCCCccchHhHH
Q 018420 14 DVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~ 31 (356)
.+++.||+|||||+.+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999977543
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=83.05 E-value=0.66 Score=35.96 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
+..+++.|++|||||+.+-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999997643
No 335
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.04 E-value=0.56 Score=38.61 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.3
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+.+++.||+|+|||+.+
T Consensus 45 ~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp SEEEEESSTTSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 44899999999999663
No 336
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=83.03 E-value=0.53 Score=36.14 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
+..+++.|++|||||+.+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457899999999997653
No 337
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=83.02 E-value=4.4 Score=33.68 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=50.5
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH---HhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
++++.|+++.-++.+++.+... ++.+..++|+......... ...+..+|+|+|.- -...+++..++
T Consensus 30 ~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v------a~~Gidi~~v~ 98 (300)
T 3i32_A 30 RAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV------AARGLDIPQVD 98 (300)
T ss_dssp SEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST------TTCSTTCCCCS
T ss_pred CEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech------hhcCcccccee
Confidence 7999999998888777766543 7889999998776554433 44566789999932 13456777888
Q ss_pred EEEE
Q 018420 122 HFIL 125 (356)
Q Consensus 122 ~vii 125 (356)
+||.
T Consensus 99 ~VI~ 102 (300)
T 3i32_A 99 LVVH 102 (300)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 338
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=82.79 E-value=0.57 Score=35.85 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=14.1
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.|++|||||+.+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=82.68 E-value=0.67 Score=34.79 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
+.+++.+++|||||+.+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357899999999997643
No 340
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=82.68 E-value=0.95 Score=39.49 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=25.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCC---CCCCeeEEEEcCch
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEP---NPGQVTALVLCHTR 53 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~---~~~~~~vlii~P~~ 53 (356)
|.-+.|.+|+|+|||..+...+...... +....+++|+....
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5678999999999997755333222221 11122678876543
No 341
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.36 E-value=0.57 Score=40.71 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=13.9
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
-++|.||||+|||..+.
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 46789999999996644
No 342
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.28 E-value=0.69 Score=38.08 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+.+++.+|+|+|||..+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34899999999999663
No 343
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.28 E-value=0.69 Score=36.10 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=16.6
Q ss_pred cCCcEEEEccCCCccchHhH
Q 018420 11 LGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~ 30 (356)
.+..+++.|++|||||+..-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46678999999999997653
No 344
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=82.27 E-value=0.68 Score=39.63 Aligned_cols=41 Identities=12% Similarity=0.010 Sum_probs=24.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCc-CCCC--CCeeEEEEcCc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQT-EPNP--GQVTALVLCHT 52 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~-~~~~--~~~~vlii~P~ 52 (356)
|.-+.|.+|+|+|||..+...+.... .... .+.+++++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 55678999999999976554443322 1111 01266777653
No 345
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=82.11 E-value=1.4 Score=34.68 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=47.5
Q ss_pred CCeEEEEecchhhHHHHHHHHHhC--------CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-----ccc-CCC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVEC--------NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-----VGR-GID 282 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-----~~~-G~d 282 (356)
+.++++.+|+++.+.++++.+.+. +..+..++|+.+..... +.+ ....+|+|+|.. +.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 468999999999999988877654 56777778876543322 111 245789999942 222 345
Q ss_pred CCCCCEEEEe
Q 018420 283 IERVNIVINY 292 (356)
Q Consensus 283 ~~~~~~vi~~ 292 (356)
+.+++.+|+-
T Consensus 148 ~~~~~~lViD 157 (219)
T 1q0u_A 148 VHTAHILVVD 157 (219)
T ss_dssp GGGCCEEEEC
T ss_pred cCcceEEEEc
Confidence 6667777643
No 346
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=82.10 E-value=0.69 Score=36.15 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=16.9
Q ss_pred cCCcEEEEccCCCccchHhHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~ 31 (356)
++..+++.|++|||||+..-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466789999999999977543
No 347
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=82.00 E-value=0.74 Score=36.27 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
+..+++.+++|||||+.+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999997653
No 348
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=81.97 E-value=0.79 Score=35.29 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
|..+.+.+|+|+|||+..
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 456789999999999653
No 349
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.94 E-value=1.2 Score=36.39 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.+.+|.|||||+.
T Consensus 36 ~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp TTCEEEEECCTTSCHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 477788999999999965
No 350
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=81.86 E-value=0.6 Score=42.24 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=32.3
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFER 65 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~ 65 (356)
|.-++|.|++|+|||..++-.+....... + .+++|++--. -..|+..++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g-~~vl~~s~E~-s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-G-KKVGLAMLEE-SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-C-CCEEEEESSS-CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-C-CcEEEEeccC-CHHHHHHHHHH
Confidence 56689999999999977655555444331 1 1678877533 34566665543
No 351
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=81.83 E-value=0.64 Score=39.23 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCccchHhHHHh
Q 018420 12 GMDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~ 33 (356)
++.+++.+++|+|||+.....+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4457889999999997654433
No 352
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=81.78 E-value=0.48 Score=43.84 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=13.9
Q ss_pred cEEEEccCCCccchH
Q 018420 14 DVICQAKSGMGKTAV 28 (356)
Q Consensus 14 ~~li~~~tGsGKT~~ 28 (356)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999965
No 353
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=81.71 E-value=0.74 Score=36.39 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
..+.+.||+|||||+.+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 467899999999997643
No 354
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=81.71 E-value=2.1 Score=43.72 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=19.8
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
.|+.+.++||+|||||+. +..++....
T Consensus 443 ~G~~vaivG~sGsGKSTl-l~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTI-ISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHH-HHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHH-HHHhccccc
Confidence 478899999999999965 344444443
No 355
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=81.52 E-value=0.54 Score=37.66 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.+.+|.|||||+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 477789999999999964
No 356
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=81.49 E-value=0.8 Score=36.52 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCccchHhHH
Q 018420 12 GMDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~ 31 (356)
+..+++.|++|||||+.+-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999976543
No 357
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=81.44 E-value=0.68 Score=35.36 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
+..+++.|++|||||+..-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997643
No 358
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=81.25 E-value=0.8 Score=34.18 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=14.2
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.+++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=81.14 E-value=0.72 Score=35.28 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.2
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.|++|||||+.+-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 360
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.13 E-value=0.73 Score=41.83 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=25.3
Q ss_pred CCccEEEEeccccccccc-cchhHHHHHHhhCCCCCcEEEEEecCc
Q 018420 118 KNVRHFILDECDKMLESL-DMRRDVQEIFKMTPHDKQVMMFSATLS 162 (356)
Q Consensus 118 ~~~~~viiDE~H~~~~~~-~~~~~~~~~~~~~~~~~~~i~~SaT~~ 162 (356)
....++++||+|.+.... +....+..+... ...++|+++++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 345679999999986521 111334444443 2455788877754
No 361
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=81.10 E-value=0.71 Score=34.97 Aligned_cols=19 Identities=42% Similarity=0.415 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.|..+++.+++|||||+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556789999999999764
No 362
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=81.08 E-value=0.67 Score=38.77 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|+.+.|.+|+|+|||+.
T Consensus 79 ~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp TTCEEEEESSSCHHHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 477789999999999965
No 363
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=81.08 E-value=0.79 Score=35.45 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.0
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.|++|||||+..-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 46899999999997643
No 364
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.05 E-value=1.2 Score=49.11 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=28.4
Q ss_pred HhhHhcCCcEEEEccCCCccchHhH--HHhhcCcCCCCCCeeEEEEcCch
Q 018420 6 IPQAILGMDVICQAKSGMGKTAVFV--LSTLQQTEPNPGQVTALVLCHTR 53 (356)
Q Consensus 6 ~~~~~~~~~~li~~~tGsGKT~~~~--~~~~~~~~~~~~~~~vlii~P~~ 53 (356)
.+.+...+.++++||||+|||.++- ..++..+.. ...++.++-|..
T Consensus 900 ye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~--~~~~~~~iNPKa 947 (3245)
T 3vkg_A 900 HQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDN--IKSEAHVMDPKA 947 (3245)
T ss_dssp HHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTT--CEEEEEEECTTT
T ss_pred HHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhC--CCceEEEECCCC
Confidence 3444457778999999999998763 233333321 222556677753
No 365
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=81.01 E-value=0.8 Score=40.44 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
.+++++.+|+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4679999999999997643
No 366
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=80.92 E-value=0.72 Score=38.54 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.+.-+.+.+|+|+|||+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556789999999999764
No 367
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=80.84 E-value=0.78 Score=35.98 Aligned_cols=17 Identities=18% Similarity=0.085 Sum_probs=14.3
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 368
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=80.62 E-value=0.86 Score=40.79 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 369
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=80.52 E-value=0.58 Score=39.30 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=17.4
Q ss_pred CCcEEEEccCCCccchHhHHHhh
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTL 34 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~ 34 (356)
+..+++.+|+|+|||..++..+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45579999999999976554443
No 370
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=80.43 E-value=2.8 Score=34.86 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=63.4
Q ss_pred CCeEEEEecchhhHHHHHHHHHhC-----CCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-c-----c-cCCCCC
Q 018420 217 FNQVVIFVKSVSRAAELNKLLVEC-----NFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----G-RGIDIE 284 (356)
Q Consensus 217 ~~~~ivf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~-----~-~G~d~~ 284 (356)
..+++|.+|+++.|.++++.+... +..+....++...... .....+|+|+|+- + . ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 347999999999999988887764 4556666665432211 1345689999953 2 1 356777
Q ss_pred CCCEEEEecCCCCh--hhhhhccccccCCCCcceEEEEEccCCChHHHHHHHHHh
Q 018420 285 RVNIVINYDMPDSA--DTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARF 337 (356)
Q Consensus 285 ~~~~vi~~~~~~s~--~~~~Q~~GR~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (356)
++.++|+-....-. ..|....-++.+.-....-+++++..-.....+..+..+
T Consensus 235 ~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l 289 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVV 289 (300)
T ss_dssp GCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHS
T ss_pred hceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHC
Confidence 88888754322100 012122222222222233455555455555555555544
No 371
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=80.39 E-value=0.74 Score=35.97 Aligned_cols=19 Identities=16% Similarity=0.085 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.+..+.|.||+|||||+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3456789999999999654
No 372
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=80.33 E-value=0.94 Score=42.05 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=17.7
Q ss_pred HhcCCcEEEEccCCCccchHh
Q 018420 9 AILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 9 ~~~~~~~li~~~tGsGKT~~~ 29 (356)
+..++.+++.+|+|+|||+.+
T Consensus 57 i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHH
Confidence 345789999999999999764
No 373
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=80.27 E-value=1.1 Score=36.16 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.3
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|..+.|.+|.|+|||+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp TTEEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999965
No 374
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=81.33 E-value=0.34 Score=36.52 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=45.8
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHH---HhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDL---LKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
++++.|+++.-++.+++.++.. ++.+..++|+......... ..++...|+|+| +.+ ...+++..++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~~-----~~Gid~~~~~ 100 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DVA-----ARGIDIPDVS 100 (170)
Confidence 7999999998888877776553 6678888887654443322 334556788888 222 2334555666
Q ss_pred EEEE
Q 018420 122 HFIL 125 (356)
Q Consensus 122 ~vii 125 (356)
+||.
T Consensus 101 ~Vi~ 104 (170)
T 2yjt_D 101 HVFN 104 (170)
Confidence 6654
No 375
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=80.15 E-value=0.77 Score=37.39 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
...++++|++|||||+.+-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3457899999999997653
No 376
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=80.11 E-value=0.78 Score=36.92 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
...+++.||+|||||+.+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4468999999999997653
No 377
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=80.08 E-value=0.55 Score=40.56 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=17.5
Q ss_pred hcCCcEEEEccCCCccchHh
Q 018420 10 ILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~ 29 (356)
.+|+.+.|.+|+|+|||...
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHH
T ss_pred cCCcEEEEecCCCCChhHHH
Confidence 45899999999999999764
No 378
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=79.88 E-value=0.76 Score=49.96 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=19.1
Q ss_pred hhHhcCCcEEEEccCCCccchHhH
Q 018420 7 PQAILGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 7 ~~~~~~~~~li~~~tGsGKT~~~~ 30 (356)
+.+...+.++++||||||||.++-
T Consensus 918 e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 918 YMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHhcceEEEECCCCCCHHHHHH
Confidence 344557889999999999997754
No 379
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=79.68 E-value=0.89 Score=35.24 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=14.2
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
..+++.|++|||||+..
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 34788999999999765
No 380
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.66 E-value=0.82 Score=35.79 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.+..+++.|++|||||+.+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SCEEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4566789999999999764
No 381
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=79.60 E-value=9.1 Score=33.63 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=52.0
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++|+|+++.-++.+++.+.+. ++.+..++|+........ ...++...|+|+|.- -...+++.+++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v------~~rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV------ASRGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG------GTSSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh------hhCCCCcccCC
Confidence 4899999999888887777653 778999999877655443 345567799999952 24566778888
Q ss_pred EEEE
Q 018420 122 HFIL 125 (356)
Q Consensus 122 ~vii 125 (356)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8775
No 382
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=79.56 E-value=0.81 Score=36.69 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|+.+.|.+|.|||||+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477789999999999965
No 383
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=79.42 E-value=0.66 Score=37.61 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=14.7
Q ss_pred CcEEEEccCCCccchHhH
Q 018420 13 MDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~ 30 (356)
..+++.|++|||||+.+-
T Consensus 33 ~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp EEEEEESCGGGTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997643
No 384
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=79.40 E-value=0.93 Score=35.14 Aligned_cols=16 Identities=25% Similarity=0.314 Sum_probs=13.8
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
.+.|.|++|||||+..
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999764
No 385
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=79.34 E-value=3.9 Score=40.71 Aligned_cols=76 Identities=7% Similarity=0.141 Sum_probs=56.8
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhC----CC----CeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC-ccccCCC-CCC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVEC----NF----PSICIHSGMSQEERLTRYKGFKEGNKRILVATD-LVGRGID-IER 285 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~----~~----~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~-~~~~G~d-~~~ 285 (356)
.+.+++|.+|+++.+.++++.+++. +. .+..++|+.+...+.+..+.+.+ .+|+|+|+ .+..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 4468999999999999998888754 55 78889999998888777777776 89999995 2222222 556
Q ss_pred CCEEEEec
Q 018420 286 VNIVINYD 293 (356)
Q Consensus 286 ~~~vi~~~ 293 (356)
++.+|+-.
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 77777443
No 386
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=79.29 E-value=1 Score=36.24 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..+++.||+|||||+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999764
No 387
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=79.28 E-value=7.6 Score=33.57 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=52.3
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++|+++.-++.+++.+... +..+..++|+........ ...++..+|+|+|.- ....+++..++
T Consensus 268 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidip~~~ 336 (412)
T 3fht_A 268 QAMIFCHTRKTASWLAAELSKE-----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV------CARGIDVEQVS 336 (412)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG------GTSSCCCTTEE
T ss_pred CEEEEeCCHHHHHHHHHHHHhC-----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc------cccCCCccCCC
Confidence 7999999999888888877664 678889999877655443 344566789999942 24566778888
Q ss_pred EEEE
Q 018420 122 HFIL 125 (356)
Q Consensus 122 ~vii 125 (356)
+||.
T Consensus 337 ~Vi~ 340 (412)
T 3fht_A 337 VVIN 340 (412)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 388
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=79.24 E-value=0.93 Score=35.23 Aligned_cols=18 Identities=33% Similarity=0.222 Sum_probs=14.3
Q ss_pred cEEEEccCCCccchHhHH
Q 018420 14 DVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~ 31 (356)
.+.+.||+|||||+..-.
T Consensus 4 ~i~l~G~~GsGKST~~~~ 21 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANL 21 (206)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999976533
No 389
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=79.22 E-value=0.78 Score=33.72 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=12.9
Q ss_pred cEEEEccCCCccchH
Q 018420 14 DVICQAKSGMGKTAV 28 (356)
Q Consensus 14 ~~li~~~tGsGKT~~ 28 (356)
-.+|.+|+|+|||.+
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 458999999999965
No 390
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=79.17 E-value=0.95 Score=40.48 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.8
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+.+++.+|+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999764
No 391
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=79.15 E-value=0.83 Score=39.10 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=19.4
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..+++|.+ ++..|.||||||.+..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 4555666766 4679999999998753
No 392
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=78.96 E-value=1.5 Score=36.90 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=12.9
Q ss_pred EEEEccCCCccchHh
Q 018420 15 VICQAKSGMGKTAVF 29 (356)
Q Consensus 15 ~li~~~tGsGKT~~~ 29 (356)
+.+.||+|||||+.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999764
No 393
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=78.85 E-value=1.2 Score=36.44 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|..+.|.+|.|+|||+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999965
No 394
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=78.83 E-value=0.98 Score=34.55 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=14.0
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.|++|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997643
No 395
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=78.79 E-value=1.2 Score=38.60 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=19.2
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..++.|.+ ++..|.||||||.+..
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 4455667766 4679999999997753
No 396
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=78.73 E-value=1.1 Score=36.30 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.1
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..+.|.+|+|||||+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLC 44 (252)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456789999999999764
No 397
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.65 E-value=4.5 Score=35.80 Aligned_cols=73 Identities=25% Similarity=0.313 Sum_probs=49.0
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEc--------CcchHHhH---HHHhcCCCcEEEechHHHHHHHhcC
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYG--------GVNIKIHK---DLLKNECPQIVVGTPGRILALARDK 113 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~ 113 (356)
+++|+++++.-++.+.+.++.. ++.+..++| +....... +...++...|+|+|. .+ ..
T Consensus 363 k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-~~-----~~ 431 (494)
T 1wp9_A 363 KIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-VG-----EE 431 (494)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-GG-----GG
T ss_pred eEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-cc-----cc
Confidence 7999999998888877777654 678888888 44433332 334456678999993 22 34
Q ss_pred CcccCCccEEEEecc
Q 018420 114 DLSLKNVRHFILDEC 128 (356)
Q Consensus 114 ~~~~~~~~~viiDE~ 128 (356)
.+++...++||+-+.
T Consensus 432 Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 432 GLDVPEVDLVVFYEP 446 (494)
T ss_dssp GGGSTTCCEEEESSC
T ss_pred CCCchhCCEEEEeCC
Confidence 567777888875443
No 398
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=78.49 E-value=13 Score=31.30 Aligned_cols=71 Identities=15% Similarity=0.299 Sum_probs=50.4
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++|+++.-++.+++.++.. +..+..++|+........ ...++..+|+|+|.- +- ..+++..++
T Consensus 240 ~~lvf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~-----~Gid~~~~~ 308 (367)
T 1hv8_A 240 YGLVFCKTKRDTKELASMLRDI-----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDV-MS-----RGIDVNDLN 308 (367)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTT-HH-----HHCCCSCCS
T ss_pred cEEEEECCHHHHHHHHHHHHhc-----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-hh-----cCCCcccCC
Confidence 7899999999888888777664 678899999876554443 344566789999942 21 234566777
Q ss_pred EEEEe
Q 018420 122 HFILD 126 (356)
Q Consensus 122 ~viiD 126 (356)
+||.-
T Consensus 309 ~Vi~~ 313 (367)
T 1hv8_A 309 CVINY 313 (367)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 77753
No 399
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=78.45 E-value=8.3 Score=33.38 Aligned_cols=70 Identities=14% Similarity=0.290 Sum_probs=51.4
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++|+++.-++.+++.++.. ++.+..++|+........ ...++...|+|+|.- ....+++..++
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~------~~~Gidi~~v~ 346 (410)
T 2j0s_A 278 QAVIFCNTKRKVDWLTEKMREA-----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV------WARGLDVPQVS 346 (410)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG------GSSSCCCTTEE
T ss_pred cEEEEEcCHHHHHHHHHHHHhC-----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh------hhCcCCcccCC
Confidence 7999999999888887777654 778899999877554433 334566789999942 24556777888
Q ss_pred EEEE
Q 018420 122 HFIL 125 (356)
Q Consensus 122 ~vii 125 (356)
+||.
T Consensus 347 ~Vi~ 350 (410)
T 2j0s_A 347 LIIN 350 (410)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 400
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=78.35 E-value=0.75 Score=36.53 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.+.+|.|+|||+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999965
No 401
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=78.24 E-value=1 Score=35.60 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=14.2
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 402
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=78.08 E-value=1.1 Score=34.47 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.5
Q ss_pred EEEEccCCCccchHhH
Q 018420 15 VICQAKSGMGKTAVFV 30 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~ 30 (356)
+++.|+.|||||+..-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999997643
No 403
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=78.06 E-value=0.98 Score=38.09 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=19.1
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..++.|.+ ++..|.||||||.+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 3445566766 4679999999998753
No 404
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=78.04 E-value=1.1 Score=41.06 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=15.7
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+..+++.+|+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 667999999999999764
No 405
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=77.93 E-value=2 Score=36.17 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.5
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
-++|.|+.|||||+..
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 3689999999999764
No 406
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=77.75 E-value=1 Score=35.49 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=16.1
Q ss_pred hcCCcEEEEccCCCccchH
Q 018420 10 ILGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~ 28 (356)
..|..+.+.+|.|+|||+.
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999965
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=77.75 E-value=1 Score=38.65 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+.-+.+.+|+|+|||+..
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 556789999999999764
No 408
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=77.73 E-value=0.97 Score=36.50 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|..+.|.+|.|||||+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477789999999999965
No 409
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=77.70 E-value=0.96 Score=33.63 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=14.9
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.+.+|.|+|||+.
T Consensus 32 ~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SCEEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 456678999999999965
No 410
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=77.69 E-value=9.9 Score=32.73 Aligned_cols=70 Identities=7% Similarity=0.145 Sum_probs=51.5
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
+++++|+++.-++.+++.+... +..+..++|+........ ...++...|+|+|. .....+++..++
T Consensus 260 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~~ 328 (400)
T 1s2m_A 260 QAIIFCNSTNRVELLAKKITDL-----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAVN 328 (400)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTEE
T ss_pred cEEEEEecHHHHHHHHHHHHhc-----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCCC
Confidence 7999999999888888877765 678889999877554443 34456678999993 113456777778
Q ss_pred EEEE
Q 018420 122 HFIL 125 (356)
Q Consensus 122 ~vii 125 (356)
+||.
T Consensus 329 ~Vi~ 332 (400)
T 1s2m_A 329 VVIN 332 (400)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 411
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=77.34 E-value=0.64 Score=35.12 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.4
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
.+.|.+++|||||+..
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999664
No 412
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=77.32 E-value=1 Score=35.89 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|+.+.+.+|.|+|||+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477788999999999965
No 413
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=77.31 E-value=1 Score=36.67 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|+.+.|.+|.|+|||+.
T Consensus 45 ~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477789999999999965
No 414
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=77.28 E-value=0.9 Score=34.47 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=13.5
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
-.+|.+|+|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4689999999999653
No 415
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.25 E-value=1.2 Score=37.14 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=15.9
Q ss_pred CCcEEEEccCCCccchHhHHHh
Q 018420 12 GMDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~ 33 (356)
++.+++.+++|+|||+.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3356788999999997654433
No 416
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=77.22 E-value=0.87 Score=37.04 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.+.+|.|+|||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999965
No 417
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=77.02 E-value=1 Score=37.06 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.|.+|.|||||+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999965
No 418
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=76.98 E-value=1.1 Score=38.36 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=18.4
Q ss_pred HhhHhcCCc--EEEEccCCCccchHhH
Q 018420 6 IPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 6 ~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
+..++.|.+ ++..|.||||||.+..
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCcceEEEECCCCCCcceEee
Confidence 445566766 4679999999997753
No 419
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=76.94 E-value=0.9 Score=36.51 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.+.+|.|+|||+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999965
No 420
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=76.91 E-value=0.96 Score=49.21 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=17.2
Q ss_pred hcCCcEEEEccCCCccchHh
Q 018420 10 ILGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~ 29 (356)
..++.++++||||+|||..+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHH
T ss_pred HCCCeEEEECCCCCCHHHHH
Confidence 34789999999999999764
No 421
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=76.86 E-value=0.92 Score=39.09 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=13.4
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
-.+|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999664
No 422
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=76.84 E-value=1.1 Score=33.79 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.6
Q ss_pred cCCcEEEEccCCCccchHhHHHh
Q 018420 11 LGMDVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~ 33 (356)
.|+-+++.+++|+|||..++..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 36678999999999997654433
No 423
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=76.77 E-value=0.87 Score=40.19 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=22.1
Q ss_pred CcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEc
Q 018420 13 MDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLC 50 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~ 50 (356)
..+++.+++|+|||+.+...+......+. +++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~---kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGL---KPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHC---CEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEe
Confidence 46889999999999775544433332221 566655
No 424
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=76.73 E-value=1.1 Score=38.32 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=18.6
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHh
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVF 29 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~ 29 (356)
.+..++.|.+ ++..|.||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3455566766 467999999999775
No 425
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=76.65 E-value=0.94 Score=36.96 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.|.+|.|+|||+.
T Consensus 31 ~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999965
No 426
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=76.39 E-value=1.1 Score=38.16 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=18.9
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..++.|.+ ++..|.||||||.+..
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 3455566766 4679999999997753
No 427
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=76.33 E-value=1.2 Score=38.05 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=18.1
Q ss_pred HhhHhcCCc--EEEEccCCCccchHh
Q 018420 6 IPQAILGMD--VICQAKSGMGKTAVF 29 (356)
Q Consensus 6 ~~~~~~~~~--~li~~~tGsGKT~~~ 29 (356)
+..++.|.+ ++..|.||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 445566766 467999999999774
No 428
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=76.32 E-value=1.1 Score=38.08 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=18.3
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHh
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVF 29 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~ 29 (356)
.+..++.|.+ ++..|.||||||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3445566766 467999999999774
No 429
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=76.30 E-value=1.1 Score=38.46 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=18.1
Q ss_pred HhhHhcCCc--EEEEccCCCccchHh
Q 018420 6 IPQAILGMD--VICQAKSGMGKTAVF 29 (356)
Q Consensus 6 ~~~~~~~~~--~li~~~tGsGKT~~~ 29 (356)
+..++.|.+ ++..|.||||||.+.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 445566766 467999999999774
No 430
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=76.25 E-value=1.1 Score=38.23 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=19.0
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..+++|.+ ++..|.||||||.+..
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 3455566766 4679999999998753
No 431
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=76.20 E-value=1.2 Score=38.28 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=19.3
Q ss_pred cHhhHhcCCcE--EEEccCCCccchHhH
Q 018420 5 CIPQAILGMDV--ICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~~--li~~~tGsGKT~~~~ 30 (356)
.+..++.|.+. +..|.||||||.+..
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 45556677764 679999999997753
No 432
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=76.16 E-value=1.3 Score=42.30 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
..++++.||+|+|||.++-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999997653
No 433
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=76.12 E-value=1.5 Score=37.39 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=19.1
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..++.|.+ ++..|.||||||.+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 3445566766 4679999999998754
No 434
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=76.10 E-value=1.3 Score=34.26 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.6
Q ss_pred cEEEEccCCCccchHhHH
Q 018420 14 DVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~ 31 (356)
.+.|.+++|||||++.-.
T Consensus 10 ~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 477999999999977543
No 435
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=76.03 E-value=1.2 Score=38.20 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=18.6
Q ss_pred cHhhHhcCCcE--EEEccCCCccchHh
Q 018420 5 CIPQAILGMDV--ICQAKSGMGKTAVF 29 (356)
Q Consensus 5 ~~~~~~~~~~~--li~~~tGsGKT~~~ 29 (356)
.+..++.|.+. +..+.||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 34555667664 67899999999774
No 436
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=76.02 E-value=1.3 Score=38.25 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.++.+++.||+|+|||+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3667899999999999654
No 437
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=75.85 E-value=1.2 Score=38.70 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=19.0
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..++.|.+ ++..|.||||||.+..
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3445566766 4679999999998753
No 438
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=75.71 E-value=1.2 Score=38.23 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=18.9
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..++.|.+ ++..|.||||||.+..
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 3445566766 4679999999997753
No 439
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=75.70 E-value=1.2 Score=38.14 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=18.5
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHh
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVF 29 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~ 29 (356)
.+..++.|.+ ++..|.||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 3445566766 467999999999874
No 440
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=75.66 E-value=1.5 Score=38.18 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=19.4
Q ss_pred cHhhHhcCCcE--EEEccCCCccchHhH
Q 018420 5 CIPQAILGMDV--ICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~~--li~~~tGsGKT~~~~ 30 (356)
.+..++.|.++ +..|.||||||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 35556677764 679999999998753
No 441
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=75.66 E-value=1.2 Score=38.18 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=18.0
Q ss_pred HhhHhcCCc--EEEEccCCCccchHh
Q 018420 6 IPQAILGMD--VICQAKSGMGKTAVF 29 (356)
Q Consensus 6 ~~~~~~~~~--~li~~~tGsGKT~~~ 29 (356)
+..++.|.+ ++..|.||||||.+.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 445566766 467999999999775
No 442
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=75.57 E-value=1.5 Score=37.34 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=19.5
Q ss_pred cHhhHhcCCcE--EEEccCCCccchHhH
Q 018420 5 CIPQAILGMDV--ICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~~--li~~~tGsGKT~~~~ 30 (356)
.+..+++|.++ +..|.||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 45556677764 679999999998754
No 443
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=75.57 E-value=1 Score=36.77 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.+.+|.|+|||+.
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467788999999999965
No 444
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=75.54 E-value=1 Score=36.56 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|..+.+.+|.|+|||+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp TTCEEEEECCSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467788999999999965
No 445
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=75.47 E-value=3.8 Score=36.26 Aligned_cols=67 Identities=12% Similarity=0.127 Sum_probs=44.4
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcCCCcEEEechHHHHHHHhcCCcccCCccEEE
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFI 124 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vi 124 (356)
+++|+||++.-++.+++.++.. +.++..++|.. .........++..+|+|+|.-. ...+++. +++||
T Consensus 179 ~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~v~------e~GiDip-v~~VI 245 (440)
T 1yks_A 179 PTAWFLPSIRAANVMAASLRKA-----GKSVVVLNRKT-FEREYPTIKQKKPDFILATDIA------EMGANLC-VERVL 245 (440)
T ss_dssp CEEEECSCHHHHHHHHHHHHHT-----TCCEEECCSSS-CC--------CCCSEEEESSST------TCCTTCC-CSEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecchh-HHHHHhhhcCCCceEEEECChh------heeeccC-ceEEE
Confidence 7999999999998888877764 67899999843 3333444566778999999321 3455667 77766
No 446
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=75.44 E-value=1.5 Score=37.10 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=19.1
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..++.|.+ ++..|.||||||.+..
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 3455566766 4679999999997753
No 447
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=75.32 E-value=1.3 Score=36.17 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCccchH
Q 018420 10 ILGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~ 28 (356)
..|..+.|.+|.|+|||+.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3477789999999999965
No 448
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=75.26 E-value=1.5 Score=33.00 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=13.3
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
-+.+.+++|||||+..
T Consensus 6 ~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999764
No 449
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=75.22 E-value=1.3 Score=37.63 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=18.5
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHh
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVF 29 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~ 29 (356)
.+..+++|.+ ++..+.||||||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445566766 467999999999774
No 450
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=75.17 E-value=8.4 Score=36.91 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=53.0
Q ss_pred hccCCCeEEEEecchhhHHHHHHHHHh----CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcCc-c-----c----
Q 018420 213 DALDFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDL-V-----G---- 278 (356)
Q Consensus 213 ~~~~~~~~ivf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~~-~-----~---- 278 (356)
....+..++|.+++++.|.+.++.+.. .|+++.++.|+++...+.... .++|+++|+- + .
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 445567899999999999988776654 589999999999887665432 3689999952 2 1
Q ss_pred ---cCCCCCCCCEEEE
Q 018420 279 ---RGIDIERVNIVIN 291 (356)
Q Consensus 279 ---~G~d~~~~~~vi~ 291 (356)
..++...+..+|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 2355566777663
No 451
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=75.13 E-value=1.3 Score=35.75 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|..+.+.+|.|+|||+.
T Consensus 28 ~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477788999999999965
No 452
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=74.99 E-value=1.5 Score=33.82 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=13.8
Q ss_pred EEEEccCCCccchHhHH
Q 018420 15 VICQAKSGMGKTAVFVL 31 (356)
Q Consensus 15 ~li~~~tGsGKT~~~~~ 31 (356)
+.+.|++|||||++.-.
T Consensus 15 IgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56899999999977543
No 453
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=74.98 E-value=2.2 Score=43.60 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=19.9
Q ss_pred hcCCcEEEEccCCCccchHhHHHhhcCcC
Q 018420 10 ILGMDVICQAKSGMGKTAVFVLSTLQQTE 38 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~~~~~~~~~~~ 38 (356)
..|+.+-|+|+||||||.. +..++....
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL-~~lL~rl~~ 1130 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTV-VALLERFYD 1130 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSH-HHHHTTSSC
T ss_pred CCCCEEEEECCCCChHHHH-HHHHhcCcc
Confidence 3478899999999999965 333444433
No 454
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=74.92 E-value=1.3 Score=34.32 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=14.0
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
.-+.+.|++|||||+.+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44778999999999764
No 455
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=74.86 E-value=1.3 Score=34.72 Aligned_cols=19 Identities=26% Similarity=0.169 Sum_probs=15.0
Q ss_pred CcEEEEccCCCccchHhHH
Q 018420 13 MDVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~~~ 31 (356)
..+.+.+++|||||+..-.
T Consensus 5 ~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578999999999976543
No 456
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.74 E-value=1.6 Score=39.66 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=28.6
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEF 63 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~ 63 (356)
.|..++|.+|+|+|||......+-..... +.+++++++... ..|+..+.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSSC-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CCCEEEEEEeCC-HHHHHHHH
Confidence 36678999999999996644333222222 225777776433 33444443
No 457
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=74.48 E-value=1.3 Score=35.72 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.0
Q ss_pred hcCCcEEEEccCCCccchH
Q 018420 10 ILGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 10 ~~~~~~li~~~tGsGKT~~ 28 (356)
..|..+.+.+|.|+|||+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3477789999999999965
No 458
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=74.37 E-value=1.4 Score=35.82 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.+.+|.|+|||+.
T Consensus 40 ~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467788999999999965
No 459
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=74.16 E-value=1.3 Score=38.13 Aligned_cols=25 Identities=32% Similarity=0.573 Sum_probs=18.3
Q ss_pred HhhHhcCCc--EEEEccCCCccchHhH
Q 018420 6 IPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 6 ~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
+..++.|.+ ++..+.||||||.+..
T Consensus 93 v~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 93 IEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCceEEEEeecCCCCCcceecc
Confidence 444556766 4679999999997753
No 460
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=74.12 E-value=1.5 Score=39.53 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.5
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
+.+++.+|+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999764
No 461
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.02 E-value=1.6 Score=38.04 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=19.0
Q ss_pred cHhhHhcCCcE--EEEccCCCccchHh
Q 018420 5 CIPQAILGMDV--ICQAKSGMGKTAVF 29 (356)
Q Consensus 5 ~~~~~~~~~~~--li~~~tGsGKT~~~ 29 (356)
.+..++.|.++ +..|.||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 45556677664 67999999999875
No 462
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=73.85 E-value=1.4 Score=36.31 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|..+.|.+|.|+|||+.
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 477788999999999965
No 463
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=73.82 E-value=1.4 Score=35.38 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=14.5
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+.-+.|.||.|||||+.+
T Consensus 25 g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp SEEEEEECSTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 445679999999999764
No 464
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=73.81 E-value=1.3 Score=39.65 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=14.7
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
+.-+.+.|++|+|||+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTI 310 (503)
T ss_dssp TEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCcccHHHHH
Confidence 445789999999999764
No 465
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=73.80 E-value=1.4 Score=35.85 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.4
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.+.+|.|+|||+.
T Consensus 49 ~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEEcCCCCcHHHH
Confidence 467788999999999965
No 466
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=73.75 E-value=1.2 Score=38.47 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.9
Q ss_pred cEEEEccCCCccchH
Q 018420 14 DVICQAKSGMGKTAV 28 (356)
Q Consensus 14 ~~li~~~tGsGKT~~ 28 (356)
-.++.|+||+|||.+
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999965
No 467
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.61 E-value=1.3 Score=42.75 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
++.+++++|+|+|||+.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEECSCTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 567999999999999764
No 468
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=73.60 E-value=1.6 Score=35.46 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=30.5
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHHHHHHHH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERF 66 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~~~~~~~ 66 (356)
|..+++.+++|+|||+..+..+...+..+. +++|+.-. +-..++.++++.+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge---~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDN---LVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTC---EEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCC---cEEEEEEe-CCHHHHHHHHHHc
Confidence 456788878888888444444444444333 67777643 4455666666554
No 469
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=73.36 E-value=1.5 Score=37.80 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=19.1
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..++.|.+ ++..|.||||||.+..
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 3455566766 4679999999998754
No 470
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=73.03 E-value=1.6 Score=34.68 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.+.-+++.|++|+|||+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556789999999999764
No 471
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=72.98 E-value=1.8 Score=32.72 Aligned_cols=17 Identities=35% Similarity=0.343 Sum_probs=13.7
Q ss_pred CcEEEEccCCCccchHh
Q 018420 13 MDVICQAKSGMGKTAVF 29 (356)
Q Consensus 13 ~~~li~~~tGsGKT~~~ 29 (356)
.-+++.+++|+|||...
T Consensus 7 ~~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL 23 (174)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 34689999999999653
No 472
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=72.93 E-value=1.7 Score=36.04 Aligned_cols=16 Identities=19% Similarity=0.220 Sum_probs=13.2
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
-+.|.||+|||||+.+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3578999999999764
No 473
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=72.92 E-value=1.7 Score=36.15 Aligned_cols=18 Identities=17% Similarity=0.099 Sum_probs=14.6
Q ss_pred cEEEEccCCCccchHhHH
Q 018420 14 DVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~ 31 (356)
-+++.|++|||||+.+-.
T Consensus 4 ~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976533
No 474
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.87 E-value=1.8 Score=41.41 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCc
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQT 37 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~ 37 (356)
.+.+|+.+|+|+|||+.+ -++...+
T Consensus 511 ~~gvLl~GPPGtGKT~lA-kaiA~e~ 535 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA-KAIANEC 535 (806)
T ss_dssp CSCCEEESSTTSSHHHHH-HHHHHTT
T ss_pred CceEEEecCCCCCchHHH-HHHHHHh
Confidence 356899999999999663 3444443
No 475
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=72.75 E-value=1.9 Score=37.18 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=18.8
Q ss_pred cHhhHhcCCc--EEEEccCCCccchHhH
Q 018420 5 CIPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 5 ~~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
.+..++.|.+ ++..+.||||||.+..
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 3445566766 4679999999997753
No 476
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=72.71 E-value=5.8 Score=34.92 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=40.0
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHHHHhcCCCcEEEech
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTP 103 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~v~T~ 103 (356)
+++|+||++.-++.+++.+++. +.++..++|+.. ........++..+|+|+|.
T Consensus 173 ~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 173 RTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp CEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG
T ss_pred CEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc
Confidence 7999999999988888877765 678999998633 2223344556789999994
No 477
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=72.70 E-value=11 Score=36.40 Aligned_cols=59 Identities=25% Similarity=0.206 Sum_probs=45.9
Q ss_pred HHhccCCCeEEEEecchhhHHHHHHHHHh----CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC
Q 018420 211 LLDALDFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 275 (356)
Q Consensus 211 ~~~~~~~~~~ivf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~ 275 (356)
++....+.+++|.+++.+.|.+.++.+.. .|+++.++.|+++...++... .++|+++|+
T Consensus 146 ~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 146 YLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 34445667899999999999888776654 589999999999987665443 368999995
No 478
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=72.59 E-value=1.6 Score=38.51 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=18.4
Q ss_pred HhhHhcCCc--EEEEccCCCccchHhH
Q 018420 6 IPQAILGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 6 ~~~~~~~~~--~li~~~tGsGKT~~~~ 30 (356)
+..++.|.+ ++..|.||||||.+..
T Consensus 129 v~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 129 LDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 444566766 4679999999998753
No 479
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=72.38 E-value=1.9 Score=45.60 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=33.1
Q ss_pred cCCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchHHHHHHH
Q 018420 11 LGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQIC 60 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~l~~q~~ 60 (356)
.+..+++.+|+|+|||..+...+...+..+. +++|+.- .++.++..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge---~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECT-TSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEEc-cccHHHHH
Confidence 4788999999999999887766666665543 5777764 44555554
No 480
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=72.33 E-value=0.89 Score=35.50 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.4
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
-+++.|++|||||+.+
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3678999999999764
No 481
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=72.20 E-value=2.8 Score=38.61 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=15.6
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|+.+.+.||+|+|||+.
T Consensus 368 ~G~~~~ivG~sGsGKSTl 385 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTI 385 (582)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477789999999999965
No 482
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=72.02 E-value=1.6 Score=45.33 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=28.6
Q ss_pred CCcEEEEccCCCccchHhHHHhhcCcCCCCCCeeEEEEcCchH
Q 018420 12 GMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRE 54 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~vlii~P~~~ 54 (356)
+..+++.+|+|+|||..++..+...+..+. +++|+.-...
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~---~vlYI~te~~ 73 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHA 73 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCC---ceEEEEecCc
Confidence 678999999999999776655555444332 6888876543
No 483
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=71.81 E-value=2.1 Score=34.10 Aligned_cols=20 Identities=15% Similarity=0.229 Sum_probs=16.1
Q ss_pred cCCcEEEEccCCCccchHhH
Q 018420 11 LGMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~~ 30 (356)
.+..+.+.+++|||||+++-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35568899999999997653
No 484
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=71.70 E-value=1.7 Score=36.08 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.5
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|+.+.+.||.|+|||+.
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467788999999999965
No 485
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=71.68 E-value=2.2 Score=34.02 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCccchHhH
Q 018420 12 GMDVICQAKSGMGKTAVFV 30 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~~ 30 (356)
...+.+.+|+|||||+.+-
T Consensus 9 ~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467899999999997653
No 486
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=71.62 E-value=1.8 Score=36.35 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=15.1
Q ss_pred cCCcEEEEccCCCccchHh
Q 018420 11 LGMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~~ 29 (356)
.+.-+.|.||+|||||+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 3555789999999999654
No 487
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=71.58 E-value=1.9 Score=34.77 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.0
Q ss_pred cEEEEccCCCccchHhH
Q 018420 14 DVICQAKSGMGKTAVFV 30 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~ 30 (356)
.+.|.|++|||||+.+-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997653
No 488
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=71.39 E-value=1.6 Score=33.96 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=13.3
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
-.+|.+|+|+|||.++
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4689999999999653
No 489
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=71.32 E-value=9.9 Score=36.42 Aligned_cols=57 Identities=16% Similarity=0.032 Sum_probs=44.1
Q ss_pred hccCCCeEEEEecchhhHHHHHHHHHh----CCCCeEEEecCCCHHHHHHHHHHhhcCCCcEEEEcC
Q 018420 213 DALDFNQVVIFVKSVSRAAELNKLLVE----CNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATD 275 (356)
Q Consensus 213 ~~~~~~~~ivf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~vlv~t~ 275 (356)
....+..++|.+|+++.|.+.++.+.. .|+++.++.|+++...+.... .++|+++|+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTp 171 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTN 171 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECC
Confidence 344567899999999999888776654 589999999999876555332 378999995
No 490
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=71.26 E-value=1.9 Score=35.55 Aligned_cols=20 Identities=25% Similarity=0.110 Sum_probs=15.4
Q ss_pred cEEEEccCCCccchHhHHHh
Q 018420 14 DVICQAKSGMGKTAVFVLST 33 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~~~ 33 (356)
.+.|.|++|||||+++-...
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999997754433
No 491
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=70.64 E-value=40 Score=28.56 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=14.6
Q ss_pred cEEEEccCCCccchHhHH
Q 018420 14 DVICQAKSGMGKTAVFVL 31 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~~~ 31 (356)
.+.+.+++|+|||..+..
T Consensus 81 ~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578899999999976543
No 492
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=70.54 E-value=2.7 Score=38.86 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|+.+.+.||+|+|||+.
T Consensus 380 ~G~~~~ivG~sGsGKSTl 397 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTI 397 (598)
T ss_dssp TTCEEEEECCTTSSTTHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 477889999999999965
No 493
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=70.31 E-value=2 Score=36.83 Aligned_cols=18 Identities=33% Similarity=0.390 Sum_probs=15.2
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|.-+.+.+|.|||||+.
T Consensus 29 ~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTL 46 (359)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCchHHHH
Confidence 466788999999999965
No 494
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=70.29 E-value=1.7 Score=36.09 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=10.6
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
-+.|.||+|||||+..
T Consensus 7 iIgItG~sGSGKSTva 22 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVK 22 (290)
T ss_dssp EEEEESCC---CCTHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999764
No 495
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=70.18 E-value=32 Score=30.71 Aligned_cols=75 Identities=23% Similarity=0.215 Sum_probs=48.0
Q ss_pred eEEEEcCchHHHHHHHHHHHHHhccCCCceEEEEEcCcchHHhHH---HHhcCCCcEEEechHHHHHHHhcCCcccCCcc
Q 018420 45 TALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKD---LLKNECPQIVVGTPGRILALARDKDLSLKNVR 121 (356)
Q Consensus 45 ~vlii~P~~~l~~q~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 121 (356)
..++++.+..-+..+.+.+.+ . +.++..++|+........ ...++..+|+|+|++.+- ..+++..++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~----~-~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-----~GiDip~v~ 418 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKN----E-YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-----TGISVKNLH 418 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHT----T-CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-----HSCCCCSEE
T ss_pred CeEEEEecHHHHHHHHHHHHH----c-CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-----cccccccCc
Confidence 344555555444444444433 2 348889999876554433 344566789999988885 355778888
Q ss_pred EEEEeccc
Q 018420 122 HFILDECD 129 (356)
Q Consensus 122 ~viiDE~H 129 (356)
+||+....
T Consensus 419 ~vi~~~~~ 426 (510)
T 2oca_A 419 HVVLAHGV 426 (510)
T ss_dssp EEEESSCC
T ss_pred EEEEeCCC
Confidence 89987766
No 496
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=70.17 E-value=2.1 Score=40.89 Aligned_cols=18 Identities=33% Similarity=0.455 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCccchHh
Q 018420 12 GMDVICQAKSGMGKTAVF 29 (356)
Q Consensus 12 ~~~~li~~~tGsGKT~~~ 29 (356)
..+++++||+|+|||..+
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 567999999999999764
No 497
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=69.78 E-value=2 Score=36.72 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=15.9
Q ss_pred cCCc--EEEEccCCCccchHhH
Q 018420 11 LGMD--VICQAKSGMGKTAVFV 30 (356)
Q Consensus 11 ~~~~--~li~~~tGsGKT~~~~ 30 (356)
.|.+ ++..|.||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 3666 5789999999997754
No 498
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=69.61 E-value=4 Score=27.81 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=30.9
Q ss_pred CCCeEEEEecchhhHHHHHHHHHhCCCCeEEEecC
Q 018420 216 DFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSG 250 (356)
Q Consensus 216 ~~~~~ivf~~~~~~~~~~~~~l~~~~~~~~~~~~~ 250 (356)
+..+++++|.+-..+...+..|.+.|..+..+.|+
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG 88 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGG 88 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCc
Confidence 45789999999989999999999999988888887
No 499
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=69.47 E-value=2.9 Score=38.65 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=15.7
Q ss_pred cCCcEEEEccCCCccchH
Q 018420 11 LGMDVICQAKSGMGKTAV 28 (356)
Q Consensus 11 ~~~~~li~~~tGsGKT~~ 28 (356)
.|+.+.+.||+|+|||+.
T Consensus 369 ~G~~~~ivG~sGsGKSTL 386 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTV 386 (595)
T ss_dssp TTCEEEEECCTTSSSTHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477889999999999965
No 500
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.17 E-value=2.1 Score=40.97 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=14.1
Q ss_pred cEEEEccCCCccchHh
Q 018420 14 DVICQAKSGMGKTAVF 29 (356)
Q Consensus 14 ~~li~~~tGsGKT~~~ 29 (356)
+++++||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999764
Done!