Query 018421
Match_columns 356
No_of_seqs 255 out of 2370
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 4.1E-65 9E-70 473.1 30.4 322 3-337 114-444 (452)
2 PLN02533 probable purple acid 100.0 5.3E-62 1.1E-66 467.3 34.2 311 3-334 108-422 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 1.5E-48 3.2E-53 360.8 31.5 284 35-330 3-294 (294)
4 PTZ00422 glideosome-associated 100.0 3.9E-40 8.4E-45 306.4 27.5 258 35-331 25-330 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 1.1E-35 2.5E-40 272.4 25.6 247 37-318 1-277 (277)
6 KOG2679 Purple (tartrate-resis 100.0 4.2E-33 9.2E-38 240.0 18.6 259 34-330 41-329 (336)
7 cd07395 MPP_CSTP1 Homo sapiens 100.0 9.2E-29 2E-33 224.8 21.8 229 35-313 3-260 (262)
8 cd07402 MPP_GpdQ Enterobacter 99.9 1.5E-25 3.2E-30 201.1 19.2 216 38-304 1-237 (240)
9 cd07396 MPP_Nbla03831 Homo sap 99.9 8.3E-25 1.8E-29 199.2 18.5 197 37-272 1-246 (267)
10 PRK11148 cyclic 3',5'-adenosin 99.9 1.3E-22 2.7E-27 185.7 21.8 229 34-315 12-261 (275)
11 cd07401 MPP_TMEM62_N Homo sapi 99.9 6.4E-23 1.4E-27 185.3 18.2 189 39-241 2-216 (256)
12 cd07399 MPP_YvnB Bacillus subt 99.9 3.5E-21 7.5E-26 169.5 15.5 149 37-239 1-165 (214)
13 PF09423 PhoD: PhoD-like phosp 99.8 4.1E-20 8.9E-25 180.6 18.7 231 2-239 68-381 (453)
14 cd00842 MPP_ASMase acid sphing 99.8 1.1E-19 2.3E-24 168.2 13.9 194 40-238 41-264 (296)
15 cd08163 MPP_Cdc1 Saccharomyces 99.8 2.7E-18 5.9E-23 154.5 14.0 170 54-239 36-232 (257)
16 PF00149 Metallophos: Calcineu 99.8 2.8E-19 6E-24 150.5 6.9 189 37-235 1-200 (200)
17 cd07393 MPP_DR1119 Deinococcus 99.7 2.7E-17 5.8E-22 146.6 15.1 190 39-270 1-226 (232)
18 cd07383 MPP_Dcr2 Saccharomyces 99.7 3.1E-16 6.7E-21 136.7 15.2 150 36-239 2-180 (199)
19 cd07392 MPP_PAE1087 Pyrobaculu 99.7 3.6E-16 7.8E-21 134.6 15.5 166 39-236 1-174 (188)
20 COG3540 PhoD Phosphodiesterase 99.7 1.1E-16 2.3E-21 149.2 12.1 226 2-235 105-418 (522)
21 TIGR03729 acc_ester putative p 99.7 6.5E-16 1.4E-20 138.5 14.3 176 38-236 1-222 (239)
22 TIGR03767 P_acnes_RR metalloph 99.7 9.3E-16 2E-20 145.6 15.7 94 142-238 290-395 (496)
23 cd07385 MPP_YkuE_C Bacillus su 99.6 2.6E-15 5.6E-20 133.1 12.5 198 36-272 1-206 (223)
24 COG1409 Icc Predicted phosphoh 99.6 2E-14 4.3E-19 132.6 16.6 179 37-235 1-193 (301)
25 cd07400 MPP_YydB Bacillus subt 99.6 1.2E-14 2.5E-19 119.9 12.7 116 39-238 1-128 (144)
26 cd07388 MPP_Tt1561 Thermus the 99.6 8.2E-14 1.8E-18 122.4 15.6 175 36-233 4-189 (224)
27 cd07404 MPP_MS158 Microscilla 99.6 2.5E-14 5.4E-19 120.9 11.1 145 39-237 1-151 (166)
28 cd00840 MPP_Mre11_N Mre11 nucl 99.6 4.5E-14 9.7E-19 124.9 13.1 187 38-238 1-204 (223)
29 PRK11340 phosphodiesterase Yae 99.6 1.4E-13 3E-18 125.6 16.5 196 35-271 48-253 (271)
30 TIGR03768 RPA4764 metallophosp 99.6 5.7E-14 1.2E-18 132.2 14.1 93 142-235 291-411 (492)
31 PF14008 Metallophos_C: Iron/z 99.4 3.8E-13 8.3E-18 93.7 6.8 62 260-326 1-62 (62)
32 cd00838 MPP_superfamily metall 99.4 3.9E-12 8.4E-17 101.9 12.3 116 40-239 1-119 (131)
33 KOG1432 Predicted DNA repair e 99.4 1.2E-10 2.7E-15 104.8 21.1 195 33-237 50-313 (379)
34 PF12850 Metallophos_2: Calcin 99.3 1E-11 2.2E-16 103.4 11.3 154 37-304 1-155 (156)
35 cd07379 MPP_239FB Homo sapiens 99.3 2.6E-11 5.7E-16 98.8 9.7 117 38-236 1-117 (135)
36 COG1408 Predicted phosphohydro 99.2 1.2E-10 2.6E-15 106.1 12.0 76 33-114 41-119 (284)
37 cd08166 MPP_Cdc1_like_1 unchar 99.2 1.3E-10 2.7E-15 99.4 10.4 108 61-239 41-151 (195)
38 cd07397 MPP_DevT Myxococcus xa 99.2 4.7E-10 1E-14 99.0 13.3 174 37-235 1-208 (238)
39 PRK05340 UDP-2,3-diacylglucosa 99.1 4.2E-10 9.1E-15 101.0 10.2 177 38-237 2-201 (241)
40 cd07384 MPP_Cdc1_like Saccharo 99.1 8.6E-10 1.9E-14 93.4 10.5 50 61-113 44-100 (171)
41 cd07394 MPP_Vps29 Homo sapiens 99.1 4.8E-08 1E-12 83.3 21.3 60 38-112 1-64 (178)
42 cd00841 MPP_YfcE Escherichia c 99.1 1.3E-09 2.7E-14 91.0 11.0 57 38-113 1-59 (155)
43 cd08165 MPP_MPPE1 human MPPE1 99.0 9E-10 1.9E-14 91.9 8.6 50 61-113 37-89 (156)
44 cd07403 MPP_TTHA0053 Thermus t 99.0 1.4E-09 3.1E-14 87.8 9.2 49 189-238 58-106 (129)
45 TIGR01854 lipid_A_lpxH UDP-2,3 99.0 9.5E-09 2.1E-13 91.6 15.1 73 40-113 2-81 (231)
46 COG1768 Predicted phosphohydro 99.0 5.3E-09 1.2E-13 85.9 11.5 158 52-238 31-202 (230)
47 PF14582 Metallophos_3: Metall 99.0 8.6E-09 1.9E-13 88.4 12.0 178 37-236 6-219 (255)
48 COG2129 Predicted phosphoester 99.0 3.7E-08 8.1E-13 84.7 15.8 175 36-238 3-190 (226)
49 TIGR00583 mre11 DNA repair pro 98.9 1.2E-07 2.7E-12 90.5 20.4 43 35-77 2-57 (405)
50 cd08164 MPP_Ted1 Saccharomyces 98.9 3.4E-09 7.4E-14 90.5 7.9 32 190-239 129-160 (193)
51 cd00845 MPP_UshA_N_like Escher 98.9 1.2E-08 2.6E-13 92.1 12.0 175 37-237 1-208 (252)
52 TIGR00040 yfcE phosphoesterase 98.9 2.3E-08 5.1E-13 83.6 12.7 61 37-112 1-63 (158)
53 KOG3770 Acid sphingomyelinase 98.9 2.1E-08 4.5E-13 97.1 13.2 177 54-237 200-406 (577)
54 cd07406 MPP_CG11883_N Drosophi 98.8 1.1E-07 2.5E-12 86.0 13.7 174 37-236 1-208 (257)
55 PRK09453 phosphodiesterase; Pr 98.8 1.7E-07 3.7E-12 80.3 13.5 74 37-113 1-76 (182)
56 cd07398 MPP_YbbF-LpxH Escheric 98.8 4.2E-08 9.2E-13 86.4 9.6 74 40-113 1-82 (217)
57 cd07410 MPP_CpdB_N Escherichia 98.8 2.5E-07 5.4E-12 84.8 14.9 185 37-236 1-231 (277)
58 cd07389 MPP_PhoD Bacillus subt 98.7 2E-07 4.4E-12 82.8 12.1 141 60-238 27-207 (228)
59 COG0420 SbcD DNA repair exonuc 98.6 3.3E-07 7.1E-12 88.2 12.6 73 37-113 1-88 (390)
60 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.6 1.2E-06 2.5E-11 79.2 15.1 185 39-241 1-235 (262)
61 cd07412 MPP_YhcR_N Bacillus su 98.6 8.5E-07 1.8E-11 81.7 13.5 64 172-237 178-243 (288)
62 cd07411 MPP_SoxB_N Thermus the 98.6 5.6E-07 1.2E-11 81.8 11.2 155 54-235 41-219 (264)
63 cd07408 MPP_SA0022_N Staphyloc 98.5 1E-06 2.2E-11 79.8 12.3 182 37-237 1-215 (257)
64 cd07382 MPP_DR1281 Deinococcus 98.4 1.4E-05 3.1E-10 71.8 16.6 172 38-236 1-179 (255)
65 PRK04036 DNA polymerase II sma 98.4 3.1E-06 6.8E-11 83.7 12.6 80 34-113 241-343 (504)
66 cd07407 MPP_YHR202W_N Saccharo 98.4 2.9E-05 6.4E-10 71.1 17.6 184 35-235 4-231 (282)
67 cd07409 MPP_CD73_N CD73 ecto-5 98.4 4.1E-06 9E-11 76.8 11.4 156 55-236 41-219 (281)
68 TIGR00619 sbcd exonuclease Sbc 98.3 1.9E-06 4.1E-11 77.8 8.3 73 37-113 1-88 (253)
69 TIGR00282 metallophosphoestera 98.3 6.4E-05 1.4E-09 67.9 17.8 174 37-236 1-182 (266)
70 COG0622 Predicted phosphoester 98.3 3.7E-05 8.1E-10 64.8 15.3 63 37-113 2-65 (172)
71 cd07386 MPP_DNA_pol_II_small_a 98.3 1.4E-05 2.9E-10 71.8 13.6 74 40-113 2-94 (243)
72 cd07405 MPP_UshA_N Escherichia 98.3 1.2E-05 2.6E-10 74.0 12.4 51 184-236 172-222 (285)
73 KOG3662 Cell division control 98.2 7.6E-06 1.7E-10 77.0 10.3 116 35-164 47-184 (410)
74 cd07425 MPP_Shelphs Shewanella 98.2 1.7E-06 3.6E-11 75.8 5.5 66 40-113 1-80 (208)
75 PRK09419 bifunctional 2',3'-cy 98.2 1.5E-05 3.3E-10 86.6 13.8 189 35-236 659-883 (1163)
76 PRK10966 exonuclease subunit S 98.2 5.7E-06 1.2E-10 79.7 8.6 73 37-113 1-87 (407)
77 COG2908 Uncharacterized protei 98.2 5.2E-06 1.1E-10 72.4 7.4 68 41-113 2-80 (237)
78 COG0737 UshA 5'-nucleotidase/2 98.2 1.8E-05 3.9E-10 79.0 12.2 186 34-235 24-247 (517)
79 PHA02546 47 endonuclease subun 98.2 6.5E-06 1.4E-10 77.6 8.5 74 37-113 1-89 (340)
80 PRK09558 ushA bifunctional UDP 98.0 7.4E-05 1.6E-09 75.1 12.4 189 35-236 33-258 (551)
81 cd07380 MPP_CWF19_N Schizosacc 98.0 2.4E-05 5.1E-10 64.5 7.1 63 41-111 2-68 (150)
82 TIGR01530 nadN NAD pyrophospha 97.9 0.0001 2.2E-09 74.0 12.2 152 56-236 42-219 (550)
83 cd08162 MPP_PhoA_N Synechococc 97.9 0.00014 3.1E-09 67.6 12.1 39 184-236 206-245 (313)
84 cd07391 MPP_PF1019 Pyrococcus 97.8 3.4E-05 7.3E-10 65.4 5.8 50 60-113 39-88 (172)
85 PHA02239 putative protein phos 97.8 5.9E-05 1.3E-09 67.2 6.6 69 38-113 2-73 (235)
86 cd07387 MPP_PolD2_C PolD2 (DNA 97.7 0.00076 1.6E-08 60.6 13.1 179 39-238 2-218 (257)
87 PRK11907 bifunctional 2',3'-cy 97.5 0.0011 2.3E-08 68.9 12.7 47 184-235 308-354 (814)
88 PRK00166 apaH diadenosine tetr 97.5 0.00016 3.4E-09 65.9 5.8 66 38-113 2-69 (275)
89 cd07423 MPP_PrpE Bacillus subt 97.5 0.00019 4.1E-09 64.0 5.6 68 38-113 2-80 (234)
90 cd07424 MPP_PrpA_PrpB PrpA and 97.5 0.00021 4.5E-09 62.5 5.7 64 38-113 2-67 (207)
91 PRK09419 bifunctional 2',3'-cy 97.5 0.0017 3.8E-08 70.9 13.9 48 184-236 233-281 (1163)
92 TIGR00024 SbcD_rel_arch putati 97.5 0.00034 7.4E-09 61.9 7.0 69 37-112 15-101 (225)
93 cd07381 MPP_CapA CapA and rela 97.4 0.0036 7.8E-08 55.9 12.4 62 172-239 162-223 (239)
94 PRK09418 bifunctional 2',3'-cy 97.3 0.0045 9.8E-08 64.2 14.5 47 184-236 243-290 (780)
95 PRK13625 bis(5'-nucleosyl)-tet 97.3 0.00037 8E-09 62.6 5.6 68 38-113 2-79 (245)
96 cd07390 MPP_AQ1575 Aquifex aeo 97.3 0.00066 1.4E-08 57.3 6.5 41 62-113 42-82 (168)
97 cd07413 MPP_PA3087 Pseudomonas 97.3 0.00041 8.9E-09 61.3 5.4 66 40-113 2-76 (222)
98 COG4186 Predicted phosphoester 97.3 0.0078 1.7E-07 49.0 11.9 65 38-112 5-85 (186)
99 COG1311 HYS2 Archaeal DNA poly 97.3 0.0049 1.1E-07 59.2 12.5 80 34-113 223-321 (481)
100 PRK11439 pphA serine/threonine 97.2 0.00039 8.5E-09 61.3 4.3 64 38-113 18-83 (218)
101 TIGR01390 CycNucDiestase 2',3' 97.2 0.0039 8.5E-08 63.6 11.9 46 184-235 194-240 (626)
102 PRK09420 cpdB bifunctional 2', 97.2 0.0032 7E-08 64.4 11.4 46 184-235 217-263 (649)
103 PRK09968 serine/threonine-spec 97.2 0.00059 1.3E-08 60.1 5.3 64 38-113 16-81 (218)
104 COG1692 Calcineurin-like phosp 97.1 0.027 5.8E-07 49.5 14.6 174 37-237 1-182 (266)
105 cd07422 MPP_ApaH Escherichia c 97.1 0.00072 1.6E-08 61.0 5.2 64 40-113 2-67 (257)
106 cd07421 MPP_Rhilphs Rhilph pho 97.1 0.0011 2.4E-08 60.3 6.1 68 38-113 3-80 (304)
107 cd00144 MPP_PPP_family phospho 96.9 0.0015 3.2E-08 57.7 5.5 66 40-113 1-68 (225)
108 KOG2863 RNA lariat debranching 96.9 0.0077 1.7E-07 55.4 10.0 176 37-234 1-229 (456)
109 smart00854 PGA_cap Bacterial c 96.9 0.019 4.1E-07 51.4 12.0 60 174-239 162-221 (239)
110 PF13277 YmdB: YmdB-like prote 96.7 0.045 9.8E-07 48.6 13.0 169 41-236 2-177 (253)
111 TIGR00668 apaH bis(5'-nucleosy 96.7 0.0028 6E-08 57.5 5.4 66 38-113 2-69 (279)
112 KOG3325 Membrane coat complex 96.6 0.035 7.6E-07 44.8 10.3 85 214-330 98-182 (183)
113 COG1407 Predicted ICC-like pho 96.6 0.0085 1.8E-07 52.7 7.2 73 37-113 20-110 (235)
114 KOG4419 5' nucleotidase [Nucle 96.0 0.03 6.6E-07 55.1 8.3 57 168-236 211-270 (602)
115 cd07420 MPP_RdgC Drosophila me 95.9 0.015 3.2E-07 54.2 5.7 65 38-113 52-123 (321)
116 cd07416 MPP_PP2B PP2B, metallo 95.7 0.022 4.7E-07 52.8 5.7 69 37-113 43-114 (305)
117 PF09587 PGA_cap: Bacterial ca 95.7 0.44 9.6E-06 42.8 14.2 64 170-239 169-232 (250)
118 COG5555 Cytolysin, a secreted 95.6 0.012 2.6E-07 52.6 3.7 170 65-236 129-335 (392)
119 smart00156 PP2Ac Protein phosp 95.5 0.022 4.8E-07 51.9 5.3 69 37-113 28-99 (271)
120 KOG2310 DNA repair exonuclease 95.2 0.067 1.5E-06 52.0 7.4 44 35-78 12-68 (646)
121 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.1 0.037 8.1E-07 50.7 5.4 68 38-113 43-113 (285)
122 cd07418 MPP_PP7 PP7, metalloph 95.1 0.044 9.5E-07 52.0 5.8 69 37-113 66-138 (377)
123 cd07414 MPP_PP1_PPKL PP1, PPKL 95.1 0.032 7E-07 51.4 4.8 69 37-113 50-121 (293)
124 PTZ00239 serine/threonine prot 95.0 0.037 7.9E-07 51.2 4.8 68 38-113 44-114 (303)
125 PTZ00480 serine/threonine-prot 94.5 0.074 1.6E-06 49.5 5.5 69 37-113 59-130 (320)
126 cd07417 MPP_PP5_C PP5, C-termi 94.4 0.068 1.5E-06 49.7 5.2 23 212-234 233-255 (316)
127 cd07419 MPP_Bsu1_C Arabidopsis 94.3 0.09 2E-06 48.9 5.9 21 212-232 242-262 (311)
128 KOG3947 Phosphoesterases [Gene 94.2 1.3 2.8E-05 39.8 12.4 66 35-115 60-128 (305)
129 PTZ00244 serine/threonine-prot 94.2 0.056 1.2E-06 49.8 4.1 68 39-113 54-123 (294)
130 PF04042 DNA_pol_E_B: DNA poly 88.3 0.64 1.4E-05 40.4 4.2 76 39-114 1-92 (209)
131 KOG0374 Serine/threonine speci 81.4 2 4.3E-05 40.3 4.1 68 38-113 60-131 (331)
132 KOG0371 Serine/threonine prote 80.5 2.3 5E-05 37.9 3.9 68 38-113 61-131 (319)
133 KOG0372 Serine/threonine speci 79.1 3 6.5E-05 36.9 4.2 67 39-113 45-114 (303)
134 cd07390 MPP_AQ1575 Aquifex aeo 71.4 4.3 9.4E-05 33.9 3.2 33 188-238 108-140 (168)
135 KOG0373 Serine/threonine speci 71.2 6.7 0.00014 34.2 4.2 64 39-113 48-117 (306)
136 PTZ00235 DNA polymerase epsilo 70.0 18 0.00039 33.1 7.0 77 35-113 26-122 (291)
137 KOG0375 Serine-threonine phosp 52.4 18 0.00039 33.9 3.7 66 39-113 90-159 (517)
138 KOG2476 Uncharacterized conser 51.7 32 0.0007 33.5 5.4 68 35-110 4-75 (528)
139 COG2843 PgsA Putative enzyme o 47.3 57 0.0012 31.2 6.3 62 171-239 210-272 (372)
140 KOG0196 Tyrosine kinase, EPH ( 43.6 22 0.00047 37.2 3.1 28 2-29 502-537 (996)
141 cd07424 MPP_PrpA_PrpB PrpA and 39.2 29 0.00063 29.9 2.9 14 223-236 168-181 (207)
142 cd00063 FN3 Fibronectin type 3 38.6 24 0.00053 24.4 2.1 15 3-17 62-76 (93)
143 PF06874 FBPase_2: Firmicute f 38.3 25 0.00055 35.6 2.6 41 62-113 184-224 (640)
144 PF03808 Glyco_tran_WecB: Glyc 37.8 2E+02 0.0043 24.0 7.8 61 152-230 48-108 (172)
145 TIGR02855 spore_yabG sporulati 36.2 29 0.00063 31.4 2.4 50 172-234 115-165 (283)
146 PF05582 Peptidase_U57: YabG p 35.6 37 0.0008 30.9 3.0 51 172-235 116-167 (287)
147 PF07353 Uroplakin_II: Uroplak 34.4 27 0.00058 28.8 1.7 15 2-16 106-120 (184)
148 PF01784 NIF3: NIF3 (NGG1p int 34.2 49 0.0011 29.4 3.6 43 190-234 56-98 (241)
149 COG2248 Predicted hydrolase (m 33.6 1.4E+02 0.003 27.0 6.1 75 35-112 175-249 (304)
150 PHA03008 hypothetical protein; 32.3 86 0.0019 26.9 4.5 43 189-236 163-205 (234)
151 TIGR03413 GSH_gloB hydroxyacyl 30.3 96 0.0021 27.6 4.9 47 65-113 120-167 (248)
152 cd01987 USP_OKCHK USP domain i 28.6 2.6E+02 0.0057 21.1 7.0 23 212-234 74-96 (124)
153 cd06533 Glyco_transf_WecG_TagA 28.1 2.2E+02 0.0047 23.7 6.4 61 152-230 46-106 (171)
154 PF09949 DUF2183: Uncharacteri 26.8 1.1E+02 0.0024 23.2 3.9 23 53-75 53-76 (100)
155 TIGR01768 GGGP-family geranylg 26.0 2E+02 0.0044 25.3 6.0 50 51-112 16-67 (223)
156 PF00753 Lactamase_B: Metallo- 25.4 1.2E+02 0.0026 24.6 4.4 45 64-108 138-193 (194)
157 PF00072 Response_reg: Respons 24.0 2.2E+02 0.0048 20.7 5.4 52 51-112 32-83 (112)
158 COG3426 Butyrate kinase [Energ 22.5 91 0.002 28.6 3.1 40 62-113 296-336 (358)
159 PRK10799 metal-binding protein 22.0 1.6E+02 0.0035 26.3 4.7 44 190-236 59-102 (247)
160 PRK09968 serine/threonine-spec 21.8 77 0.0017 27.7 2.6 14 222-235 178-191 (218)
161 PRK13738 conjugal transfer pil 20.2 1.7E+02 0.0036 25.6 4.2 23 153-180 121-143 (209)
162 PRK10241 hydroxyacylglutathion 20.1 1.8E+02 0.0039 26.0 4.6 46 66-113 122-168 (251)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-65 Score=473.08 Aligned_cols=322 Identities=43% Similarity=0.663 Sum_probs=285.3
Q ss_pred CCCCCCCEEEEEEEE---EecceeeeecchhhhcccCeEEEEEecCCCCCCcHHHHHHHHHc-CCcEEEEcCccccCCCC
Q 018421 3 LSMIPSTITRLGVAI---LLENFGFKRLQRLILMLLTSLESLVSDLGQTYNSLSTLEHYMES-GAQTVLFLGDLSYADRY 78 (356)
Q Consensus 3 ~gL~p~t~Y~y~v~~---~s~~~~f~t~~~~~~~~~~~~f~v~gD~g~~~~~~~~l~~~~~~-~~d~vl~~GD~vy~~~~ 78 (356)
++|+|+|+|+|+||+ ||++|.|+|+|. ...+.+|+++||+|.+.....++..+.++ ++|+||++||++|+++.
T Consensus 114 ~~L~~~t~YyY~~Gs~~~wS~~f~F~t~p~---~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~ 190 (452)
T KOG1378|consen 114 KNLEPNTRYYYQVGSDLKWSEIFSFKTPPG---QDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGY 190 (452)
T ss_pred cCCCCCceEEEEeCCCCCcccceEeECCCC---ccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCC
Confidence 589999999999996 899999999993 23799999999999988877788777777 59999999999999887
Q ss_pred CccccchhHHHHHHHHHHhhcCCCeEEcccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEE
Q 018421 79 QFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVL 158 (356)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~l 158 (356)
.+ .+||+|.+++|++++.+|++++.||||..+.+.. .|..|..||.||.+......+.||||++|++|||+|
T Consensus 191 ~n----~~wD~f~r~vEp~As~vPymv~~GNHE~d~~~~~----~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~l 262 (452)
T KOG1378|consen 191 SN----WQWDEFGRQVEPIASYVPYMVCSGNHEIDWPPQP----CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVL 262 (452)
T ss_pred Cc----cchHHHHhhhhhhhccCceEEecccccccCCCcc----cccccceeeccCCCcCCCCCceeEEEeeccEEEEEE
Confidence 43 6999999999999999999999999999765432 588999999999987777778999999999999999
Q ss_pred cCCCCCC--CChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCC-cccccH--HHHHHHHHHHHhcCccEEEecccc
Q 018421 159 SSYSPFV--KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEA-HFMEGE--SMRAAFESWFVRYKVDVVFAGHVH 233 (356)
Q Consensus 159 ds~~~~~--~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~-~~~~~~--~~~~~l~~l~~~~~v~lvlsGH~H 233 (356)
+|+..+. ...+|.+||+++|++++|.+.||+||++|.|+|++... +..++. .+|..|+++|.+++||++|+||.|
T Consensus 263 sse~~~~~~~~~~QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH 342 (452)
T KOG1378|consen 263 STETYYNFLKGTAQYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVH 342 (452)
T ss_pred eccccccccccchHHHHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccce
Confidence 9988753 56889999999999998766899999999999998874 555555 788999999999999999999999
Q ss_pred ceeeeeeecCceecccCCcccccCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCceEEEEEE
Q 018421 234 AYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWN 313 (356)
Q Consensus 234 ~y~r~~~~~~~~~~v~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~ 313 (356)
+|||++|++|.+....++ +.++.++.+++||++|+||+.++.. .+..++|+|++++..++||++|++.|+||+.++++
T Consensus 343 ~YER~~piyn~~~~~~~~-~~~~~d~~aPvyI~~G~~G~~e~~~-~~~~~~p~~Sa~R~~dfG~~~L~v~N~TH~~~~~~ 420 (452)
T KOG1378|consen 343 RYERFCPIYNNTCGTGWG-PVHLVDGMAPIYITVGDGGNHEHLD-PFSSPQPEWSAFREGDFGYTRLTAKNGTHAHVHWV 420 (452)
T ss_pred ehhccchhhcceeeccCC-cccccCCCCCEEEEEccCCcccccC-cccCCCCcccccccccCCeEEEEEecCceEEEEEE
Confidence 999999999988766666 7788899999999999999987763 44558999999999999999999999999999999
Q ss_pred EcCCCCeeeeeeEEEEecccCChh
Q 018421 314 RNDDGKKVATDSFILHNQYWASNR 337 (356)
Q Consensus 314 ~~~dg~~~~~D~f~i~~~~~~~~~ 337 (356)
++.|++.++.|+|+|.|+...+..
T Consensus 421 ~~~d~~g~~~D~fwl~k~~~~~~~ 444 (452)
T KOG1378|consen 421 RNSDASGVVIDSFWLIKDYRDMVV 444 (452)
T ss_pred eccCCCceEeeeEEEEcccCcccc
Confidence 998887677999999999776643
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=5.3e-62 Score=467.34 Aligned_cols=311 Identities=40% Similarity=0.680 Sum_probs=265.4
Q ss_pred CCCCCCCEEEEEEEE--EecceeeeecchhhhcccCeEEEEEecCCCCCCcHHHHHHHHHcCCcEEEEcCccccCCCCCc
Q 018421 3 LSMIPSTITRLGVAI--LLENFGFKRLQRLILMLLTSLESLVSDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQF 80 (356)
Q Consensus 3 ~gL~p~t~Y~y~v~~--~s~~~~f~t~~~~~~~~~~~~f~v~gD~g~~~~~~~~l~~~~~~~~d~vl~~GD~vy~~~~~~ 80 (356)
+||+|||+|+|||+. +|+.|+|+|+|.. .+++|+++||+|.......+++++.+.+|||||++||++|+++.
T Consensus 108 ~~L~p~T~Y~Yrvg~~~~s~~~~F~T~p~~----~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~~GDl~y~~~~-- 181 (427)
T PLN02533 108 GPLKPNTVYYYKCGGPSSTQEFSFRTPPSK----FPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFILPGDLSYANFY-- 181 (427)
T ss_pred CCCCCCCEEEEEECCCCCccceEEECCCCC----CCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEEcCccccccch--
Confidence 799999999999994 7889999999863 58999999999987666778888888899999999999997543
Q ss_pred cccchhHHHHHHHHHHhhcCCCeEEcccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcC
Q 018421 81 IDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSS 160 (356)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds 160 (356)
+.+|+.|.++++++...+|+++++||||....+.. ....|..|..+|.||....+...+.||||++|++|||+|||
T Consensus 182 ---~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~-~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds 257 (427)
T PLN02533 182 ---QPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPIL-HPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGS 257 (427)
T ss_pred ---HHHHHHHHHHhhhHhhcCceEEeCccccccccccc-cCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeC
Confidence 57899999999999889999999999998643211 12356778899999986555556889999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccc--cHHHHHHHHHHHHhcCccEEEeccccceeee
Q 018421 161 YSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFME--GESMRAAFESWFVRYKVDVVFAGHVHAYERS 238 (356)
Q Consensus 161 ~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~--~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 238 (356)
+.++....+|++||+++|+++++++.+|+||++|+|+|++...+... ...+++.|+++|.+++||++|+||+|.|+|+
T Consensus 258 ~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~YeR~ 337 (427)
T PLN02533 258 YTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYERF 337 (427)
T ss_pred CccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceeccccc
Confidence 98877789999999999999877778999999999999876543222 2457889999999999999999999999999
Q ss_pred eeecCceecccCCcccccCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCceEEEEEEEcCCC
Q 018421 239 YRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDG 318 (356)
Q Consensus 239 ~~~~~~~~~v~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~dg 318 (356)
+|+++.+ | ++.|++||++|+||+.++....+..+.|+|++++...+||++|+|.|.+++.|+|+++.|+
T Consensus 338 ~p~~~~~-------~----~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~ 406 (427)
T PLN02533 338 DRVYQGK-------T----DKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHGQLNVVDANTMEWTWHRNDDD 406 (427)
T ss_pred ccccCCc-------c----CCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEEEEEEEcCCeEEEEEEecCCC
Confidence 9987643 3 4679999999999998875445667889999999999999999999999999999998888
Q ss_pred CeeeeeeEEEEecccC
Q 018421 319 KKVATDSFILHNQYWA 334 (356)
Q Consensus 319 ~~~~~D~f~i~~~~~~ 334 (356)
+.++.|+|||.|.-..
T Consensus 407 ~~~~~D~~~i~~~~~~ 422 (427)
T PLN02533 407 QSVASDSVWLKSLLTE 422 (427)
T ss_pred CceeeeEEEEEeccCC
Confidence 6556899999987543
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=1.5e-48 Score=360.84 Aligned_cols=284 Identities=44% Similarity=0.777 Sum_probs=222.7
Q ss_pred cCeEEEEEecCCCC-CCcHHHHHHHHH--cCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcc
Q 018421 35 LTSLESLVSDLGQT-YNSLSTLEHYME--SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHE 111 (356)
Q Consensus 35 ~~~~f~v~gD~g~~-~~~~~~l~~~~~--~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD 111 (356)
.+++|+++||+|.. ..+.++++++++ .+|||||++||++|+.+..+ ..+|+.|.+.++++...+|+++++||||
T Consensus 3 ~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~~---~~~~~~~~~~~~~~~~~~P~~~~~GNHD 79 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYNN---GSRWDTFMRQIEPLASYVPYMVTPGNHE 79 (294)
T ss_pred CcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCcc---chhHHHHHHHHHHHHhcCCcEEcCcccc
Confidence 58999999999974 467888999888 59999999999998766532 3689999999999888899999999999
Q ss_pred ccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCC---CCChHHHHHHHHHHccccCCCCCe
Q 018421 112 IEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF---VKYTPQWEWLREELKKVDREKTPW 188 (356)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~---~~~~~Q~~wL~~~L~~~~~~~~~~ 188 (356)
........ ....+..++.++........+.||+|++|+++||+|||+... ....+|++||+++|+++++.+.+|
T Consensus 80 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~ 156 (294)
T cd00839 80 ADYNFSFY---KIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPW 156 (294)
T ss_pred cccCCCCc---ccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCe
Confidence 86322110 011111122333333334557899999999999999998654 457899999999999875555689
Q ss_pred EEEEEecccccCCCCccc--ccHHHHHHHHHHHHhcCccEEEeccccceeeeeeecCceecccCCcccccCCCCCCEEEE
Q 018421 189 LIVLMHVPIYNSNEAHFM--EGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYIT 266 (356)
Q Consensus 189 ~Iv~~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~v~~g~~~~~~~~~g~~~iv 266 (356)
+||++|+|+++....... .....++.|.++|++++|+++|+||+|.|+|+.|+++++.. +.+..+.+++|++||+
T Consensus 157 ~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~---~~~~~~~~~~g~~yiv 233 (294)
T cd00839 157 IIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV---GDCNPYSNPKGPVHIV 233 (294)
T ss_pred EEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec---cccccccCCCccEEEE
Confidence 999999999987654322 24567899999999999999999999999999998765521 3444556789999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCceEEEEEEEcCCCCeeeeeeEEEEe
Q 018421 267 VGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHN 330 (356)
Q Consensus 267 ~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~dg~~~~~D~f~i~~ 330 (356)
+|+||+.+... ....+.|+|++++...+||++|++.++++|.++|+++.+|++ .|+|+|.|
T Consensus 234 ~G~~G~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~v--~D~f~i~k 294 (294)
T cd00839 234 IGAGGNDEGLD-PFSAPPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGVV--IDSFWIIK 294 (294)
T ss_pred ECCCccccCcC-cccCCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCeE--EEEEEEeC
Confidence 99999987542 111233578999888999999999888899999999888976 89999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=3.9e-40 Score=306.43 Aligned_cols=258 Identities=14% Similarity=0.216 Sum_probs=193.5
Q ss_pred cCeEEEEEecCCCCCCcHHHHHHHHH-----cCCcEEEEcCccccCCCCCccccchhHHH-HHHHHHHhh--cCCCeEEc
Q 018421 35 LTSLESLVSDLGQTYNSLSTLEHYME-----SGAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERSA--AYQPWIWS 106 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~~~~~l~~~~~-----~~~d~vl~~GD~vy~~~~~~~~~~~~~~~-~~~~~~~~~--~~~P~~~v 106 (356)
.+++|+++||||.+...+..+++.+. .++||||.+||+. .+|..+.+ +.+|+. |.+.+.... .++||++|
T Consensus 25 ~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~sv~-Dp~f~~~FE~vY~~~s~~L~~Pwy~v 102 (394)
T PTZ00422 25 AQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNF-PGGVDGLN-DPKWKHCFENVYSEESGDMQIPFFTV 102 (394)
T ss_pred CeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccc-cCCCCCcc-chhHHhhHhhhccCcchhhCCCeEEe
Confidence 68999999999987777766655443 3899999999998 67777666 777855 666666554 57899999
Q ss_pred ccCccccccccCCccc--------------ccc---cccccccCCcCCCCCCCCceEEE----Ee-------------CC
Q 018421 107 AGNHEIEYMTYMGEVV--------------PFK---SYLHRYPTPHLASKSSSPLWYAI----RR-------------AS 152 (356)
Q Consensus 107 ~GNHD~~~~~~~~~~~--------------~~~---~~~~~~~~P~~~~~~~~~~~ys~----~~-------------g~ 152 (356)
+||||+..+...+-.. .+. ....+|.|| +.||.+ .. ..
T Consensus 103 LGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP--------~~yY~~~~~f~~~~~~~~~~~~~~~~~ 174 (394)
T PTZ00422 103 LGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMP--------NYWYHYFTHFTDTSGPSLLKSGHKDMS 174 (394)
T ss_pred CCcccccCCchhhhccccccccccccccccccccccccCCCccCC--------chhheeeeeeecccccccccccCCCCE
Confidence 9999996433211100 011 123688888 457754 21 12
Q ss_pred EEEEEEcCCCC-----CCC-ChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccE
Q 018421 153 AHIIVLSSYSP-----FVK-YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDV 226 (356)
Q Consensus 153 ~~fi~lds~~~-----~~~-~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~l 226 (356)
+.||+|||..- +.. ...|++||+++|+.+ ++.++|+||++|||+||++.++ +..++++.|+|+|++|+||+
T Consensus 175 v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~hg--~~~~L~~~L~PLL~ky~Vdl 251 (394)
T PTZ00422 175 VAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGSSK--GDSYLSYYLLPLLKDAQVDL 251 (394)
T ss_pred EEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCCCC--CCHHHHHHHHHHHHHcCcCE
Confidence 89999999531 222 467899999999754 3457899999999999988643 45678999999999999999
Q ss_pred EEeccccceeeeeeecCceecccCCcccccCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCc
Q 018421 227 VFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRT 306 (356)
Q Consensus 227 vlsGH~H~y~r~~~~~~~~~~v~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~ 306 (356)
+||||+|+||++. .+++.||++|+||+..+. . . ..+++++|....+||+.+++ +..
T Consensus 252 YisGHDH~lq~i~-------------------~~gt~yIvSGaGs~~~~~--~-~-~~~~~s~F~~~~~GF~~~~l-~~~ 307 (394)
T PTZ00422 252 YISGYDRNMEVLT-------------------DEGTAHINCGSGGNSGRK--S-I-MKNSKSLFYSEDIGFCIHEL-NAE 307 (394)
T ss_pred EEEccccceEEec-------------------CCCceEEEeCccccccCC--C-C-CCCCCcceecCCCCEEEEEE-ecC
Confidence 9999999999975 246889999999986532 1 1 22357889888999999999 566
Q ss_pred eEEEEEEEcCCCCeeeeeeEEEEec
Q 018421 307 HAFYHWNRNDDGKKVATDSFILHNQ 331 (356)
Q Consensus 307 ~~~~~~~~~~dg~~~~~D~f~i~~~ 331 (356)
.+.++|+.+.+|++ ++++++.+.
T Consensus 308 ~l~~~fid~~~Gkv--L~~~~~~~~ 330 (394)
T PTZ00422 308 GMVTKFVSGNTGEV--LYTHKQPLK 330 (394)
T ss_pred EEEEEEEeCCCCcE--EEEeeeccc
Confidence 79999986678998 688888755
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=1.1e-35 Score=272.44 Aligned_cols=247 Identities=21% Similarity=0.349 Sum_probs=175.6
Q ss_pred eEEEEEecCCCC-CCcHH----HHHHHHH-cCCcEEEEcCccccCCCCCccccchhH-HHHHHHHHHhhcCCCeEEcccC
Q 018421 37 SLESLVSDLGQT-YNSLS----TLEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRW-DSWGRFVERSAAYQPWIWSAGN 109 (356)
Q Consensus 37 ~~f~v~gD~g~~-~~~~~----~l~~~~~-~~~d~vl~~GD~vy~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~v~GN 109 (356)
++|+++||+|.. ...+. .+.++.+ .+|||||++||++|+++....+ +..| +.|.+.++.+...+|+++++||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~-~~~~~~~~~~~~~~~~~~~P~~~v~GN 79 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVD-DPRFETTFEDVYSAPSLQVPWYLVLGN 79 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCc-chHHHHHHHHHccchhhcCCeEEecCC
Confidence 479999999986 33332 2333333 4999999999999988765433 3344 3455555555457899999999
Q ss_pred ccccccccCCccccccc--ccccccCCcCCCCCCCCceEEEEeC------CEEEEEEcCCCCC---------------CC
Q 018421 110 HEIEYMTYMGEVVPFKS--YLHRYPTPHLASKSSSPLWYAIRRA------SAHIIVLSSYSPF---------------VK 166 (356)
Q Consensus 110 HD~~~~~~~~~~~~~~~--~~~~~~~P~~~~~~~~~~~ys~~~g------~~~fi~lds~~~~---------------~~ 166 (356)
||+.... .....+.. +..++.+| ..||+|+++ +++||+|||.... ..
T Consensus 80 HD~~~~~--~~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~ 149 (277)
T cd07378 80 HDYSGNV--SAQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKL 149 (277)
T ss_pred cccCCCc--hheeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhh
Confidence 9986321 11111111 13334444 568999988 7999999996421 13
Q ss_pred ChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeeeeecCcee
Q 018421 167 YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHY 246 (356)
Q Consensus 167 ~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~ 246 (356)
..+|++||+++|+++ +.+|+||++|||+++..... .....++.|.+++++++|+++|+||+|.+++..+
T Consensus 150 ~~~Q~~wL~~~L~~~---~~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~------ 218 (277)
T cd07378 150 AEEQLAWLEKTLAAS---TADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKD------ 218 (277)
T ss_pred HHHHHHHHHHHHHhc---CCCeEEEEeCccceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEeCCcccceeeec------
Confidence 478999999999985 33799999999999765422 2256788999999999999999999999998763
Q ss_pred cccCCcccccCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCceEEEEEEEcCCC
Q 018421 247 NISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDG 318 (356)
Q Consensus 247 ~v~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~dg 318 (356)
...++.||++|+||...+.........|.|..++...+||++|+|++ ..+.++|+. .||
T Consensus 219 -----------~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~-~~l~~~~~~-~~g 277 (277)
T cd07378 219 -----------DGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTK-EELTVRFYD-ADG 277 (277)
T ss_pred -----------CCCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEec-CEEEEEEEC-CCC
Confidence 12579999999998876542211222234677777889999999964 578899874 454
No 6
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-33 Score=239.98 Aligned_cols=259 Identities=19% Similarity=0.248 Sum_probs=176.7
Q ss_pred ccCeEEEEEecCCCCC-CcHHHHH----HHHHc-CCcEEEEcCccccCCCCCccccchhH-HHHHHHHHHhhcCCCeEEc
Q 018421 34 LLTSLESLVSDLGQTY-NSLSTLE----HYMES-GAQTVLFLGDLSYADRYQFIDVGVRW-DSWGRFVERSAAYQPWIWS 106 (356)
Q Consensus 34 ~~~~~f~v~gD~g~~~-~~~~~l~----~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~v 106 (356)
..+++|+++||||... .++..++ .+.+. +.||||.+||++|++|..+.. +.++ +.|.+.+..-..+.|||.+
T Consensus 41 dgslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~-Dp~Fq~sF~nIYT~pSLQkpWy~v 119 (336)
T KOG2679|consen 41 DGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSEN-DPRFQDSFENIYTAPSLQKPWYSV 119 (336)
T ss_pred CCceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCC-ChhHHhhhhhcccCcccccchhhh
Confidence 4789999999999754 3343332 33333 999999999999999987655 4443 3355554443445799999
Q ss_pred ccCccccccccCCcccc--cccccccccCCcCCCCCCCCceEE----EE--eCCEEEEEEcCCC-------CCC------
Q 018421 107 AGNHEIEYMTYMGEVVP--FKSYLHRYPTPHLASKSSSPLWYA----IR--RASAHIIVLSSYS-------PFV------ 165 (356)
Q Consensus 107 ~GNHD~~~~~~~~~~~~--~~~~~~~~~~P~~~~~~~~~~~ys----~~--~g~~~fi~lds~~-------~~~------ 165 (356)
+||||+..+. .++.. ++....||..|.. ||. .+ .-++.++++|+.. +|.
T Consensus 120 lGNHDyrGnV--~AQls~~l~~~d~RW~c~rs--------f~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~ 189 (336)
T KOG2679|consen 120 LGNHDYRGNV--EAQLSPVLRKIDKRWICPRS--------FYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRV 189 (336)
T ss_pred ccCccccCch--hhhhhHHHHhhccceecccH--------HhhcceeeeeeccccccchhhheecccccccccccCChHH
Confidence 9999997543 22222 4555566765531 121 01 1134444444421 111
Q ss_pred -CChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeeeeecCc
Q 018421 166 -KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNL 244 (356)
Q Consensus 166 -~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~ 244 (356)
....++.||+..|++ +.++|+||++|||+.+.+.+ +...+++++|.|+|++++||++++||+|+.|++..
T Consensus 190 ~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~~H--G~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~---- 260 (336)
T KOG2679|consen 190 KYLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAGHH--GPTKELEKQLLPILEANGVDLYINGHDHCLQHISS---- 260 (336)
T ss_pred HHHHHHHHHHHHHHHH---hhcceEEEecccceehhhcc--CChHHHHHHHHHHHHhcCCcEEEecchhhhhhccC----
Confidence 125689999999998 57789999999999988764 36778999999999999999999999999999752
Q ss_pred eecccCCcccccCCCCCCEEEEeCCCCCCCCCCCCCC-CCCCCccceeeCcccEEEEEEecCceEEEEEEEcCCCCeeee
Q 018421 245 HYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFR-YPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVAT 323 (356)
Q Consensus 245 ~~~v~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~-~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~dg~~~~~ 323 (356)
..+++-|+++|+|...-... ... ...|+...|.....||+.+++. ...+++.|+. .-|++ +
T Consensus 261 -------------~e~~iqf~tSGagSkaw~g~-~~~~~~~p~~lkF~YdgqGfmsv~is-~~e~~vvfyD-~~G~~--L 322 (336)
T KOG2679|consen 261 -------------PESGIQFVTSGAGSKAWRGT-DHNPEVNPKELKFYYDGQGFMSVEIS-HSEARVVFYD-VSGKV--L 322 (336)
T ss_pred -------------CCCCeeEEeeCCcccccCCC-ccCCccChhheEEeeCCCceEEEEEe-cceeEEEEEe-ccCce--E
Confidence 13456678888766543221 111 2356667888778899999994 5668888885 56887 4
Q ss_pred eeEEEEe
Q 018421 324 DSFILHN 330 (356)
Q Consensus 324 D~f~i~~ 330 (356)
.+....|
T Consensus 323 hk~~t~k 329 (336)
T KOG2679|consen 323 HKWSTSK 329 (336)
T ss_pred EEeeccc
Confidence 5554433
No 7
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.97 E-value=9.2e-29 Score=224.84 Aligned_cols=229 Identities=17% Similarity=0.180 Sum_probs=158.2
Q ss_pred cCeEEEEEecCCCCC--Cc---------------HHHHHHHHHc--CCcEEEEcCccccCCCCCccccchhHHHHHHHHH
Q 018421 35 LTSLESLVSDLGQTY--NS---------------LSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVE 95 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~--~~---------------~~~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~ 95 (356)
.+++|++++|.|.+. .. ..+++.+.+. +||+|+++||+++....... ...+|+.+.+.++
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~-~~~~~~~~~~~~~ 81 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDEL-RERQVSDLKDVLS 81 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhh-HHHHHHHHHHHHh
Confidence 589999999998762 11 1233444455 89999999999976543211 1245666667676
Q ss_pred HhhcCCCeEEcccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCC------CCChH
Q 018421 96 RSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF------VKYTP 169 (356)
Q Consensus 96 ~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~------~~~~~ 169 (356)
.+...+|+++++||||....+.. ..+..|...| ++.||++++++++||+|||.... ....+
T Consensus 82 ~~~~~vp~~~i~GNHD~~~~~~~---~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~ 148 (262)
T cd07395 82 LLDPDIPLVCVCGNHDVGNTPTE---ESIKDYRDVF----------GDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQA 148 (262)
T ss_pred hccCCCcEEEeCCCCCCCCCCCh---hHHHHHHHHh----------CCcceEEEECCEEEEEeccccccCccccccchHH
Confidence 66557899999999998532211 1112222222 24578999999999999996432 13478
Q ss_pred HHHHHHHHHccccCCCCCeEEEEEecccccCCCCcc----cccHHHHHHHHHHHHhcCccEEEeccccceeeeeeecCce
Q 018421 170 QWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHF----MEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLH 245 (356)
Q Consensus 170 Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~----~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~ 245 (356)
|++||+++|+++.+.+.+++||++|+|++....... ......++++.+++++++|+++||||+|...+..
T Consensus 149 ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~------ 222 (262)
T cd07395 149 QDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGR------ 222 (262)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceE------
Confidence 999999999986433556899999999986443211 1234568899999999999999999999977642
Q ss_pred ecccCCcccccCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCceEEEEEE
Q 018421 246 YNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWN 313 (356)
Q Consensus 246 ~~v~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~ 313 (356)
.+++.++++++.|.... ...+||..++++.+. ++++|+
T Consensus 223 -------------~~g~~~~~~~~~~~~~~----------------~~~~g~~~~~v~~~~-~~~~~~ 260 (262)
T cd07395 223 -------------YGGLEMVVTSAIGAQLG----------------NDKSGLRIVKVTEDK-IVHEYY 260 (262)
T ss_pred -------------ECCEEEEEcCceecccC----------------CCCCCcEEEEECCCc-eeeeee
Confidence 13566888887775321 113799999996544 677776
No 8
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.94 E-value=1.5e-25 Score=201.08 Aligned_cols=216 Identities=20% Similarity=0.249 Sum_probs=145.8
Q ss_pred EEEEEecCCCCCCc---------H----HHHHHHHHc--CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCC
Q 018421 38 LESLVSDLGQTYNS---------L----STLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP 102 (356)
Q Consensus 38 ~f~v~gD~g~~~~~---------~----~~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P 102 (356)
||++++|+|.+... . ++++.+.+. +||+||++||+++... ..+|+.+.+.++.+ .+|
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~------~~~~~~~~~~l~~~--~~p 72 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS------PESYERLRELLAAL--PIP 72 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC------HHHHHHHHHHHhhc--CCC
Confidence 68999999976421 2 234445555 8999999999997532 23445555555554 689
Q ss_pred eEEcccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCC----CChHHHHHHHHHH
Q 018421 103 WIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFV----KYTPQWEWLREEL 178 (356)
Q Consensus 103 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~----~~~~Q~~wL~~~L 178 (356)
+++++||||.... +. ..|.... ......+|+|+.++++||+||+..... ...+|++||++.|
T Consensus 73 ~~~v~GNHD~~~~--------~~---~~~~~~~---~~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L 138 (240)
T cd07402 73 VYLLPGNHDDRAA--------MR---AVFPELP---PAPGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAAL 138 (240)
T ss_pred EEEeCCCCCCHHH--------HH---Hhhcccc---ccccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHH
Confidence 9999999998411 11 1111000 012346789999999999999965321 3578999999999
Q ss_pred ccccCCCCCeEEEEEecccccCCCCcc-cccHHHHHHHHHHHHhc-CccEEEeccccceeeeeeecCceecccCCccccc
Q 018421 179 KKVDREKTPWLIVLMHVPIYNSNEAHF-MEGESMRAAFESWFVRY-KVDVVFAGHVHAYERSYRISNLHYNISSGDCFPV 256 (356)
Q Consensus 179 ~~~~~~~~~~~Iv~~H~P~~~~~~~~~-~~~~~~~~~l~~l~~~~-~v~lvlsGH~H~y~r~~~~~~~~~~v~~g~~~~~ 256 (356)
++.. ..++|+++|+|++....... ......++++.+++.++ +++++|+||.|......
T Consensus 139 ~~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~----------------- 198 (240)
T cd07402 139 AEAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGS----------------- 198 (240)
T ss_pred HhCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE-----------------
Confidence 9852 45789999999976542110 01112267889999999 99999999999965543
Q ss_pred CCCCCCEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEec
Q 018421 257 PDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKN 304 (356)
Q Consensus 257 ~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~ 304 (356)
.+|+.++++|+.|.... +.++..+.....+||..+.+.+
T Consensus 199 --~~g~~~~~~gs~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 237 (240)
T cd07402 199 --WGGIPLLTAPSTCHQFA-------PDLDDFALDALAPGYRALSLHE 237 (240)
T ss_pred --ECCEEEEEcCcceeeec-------CCCCcccccccCCCCcEEEEec
Confidence 25677899998877532 1223344445578999888854
No 9
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.93 E-value=8.3e-25 Score=199.15 Aligned_cols=197 Identities=19% Similarity=0.226 Sum_probs=130.4
Q ss_pred eEEEEEecCCCCCC----------cH----HHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCC
Q 018421 37 SLESLVSDLGQTYN----------SL----STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP 102 (356)
Q Consensus 37 ~~f~v~gD~g~~~~----------~~----~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P 102 (356)
+||++++|+|.... +. ++++.+.+.+||+||++||+++..... . ..+|+.+.+.++.+ .+|
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~--~-~~~~~~~~~~l~~l--~~p 75 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNAR--A-EEALDAVLAILDRL--KGP 75 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCch--H-HHHHHHHHHHHHhc--CCC
Confidence 68999999995431 11 234444455899999999999654321 1 23444444444443 489
Q ss_pred eEEcccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCC-------------------
Q 018421 103 WIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP------------------- 163 (356)
Q Consensus 103 ~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~------------------- 163 (356)
+++++||||..... .. .+. ..+ ....+..||+|+.++++||+||+...
T Consensus 76 ~~~v~GNHD~~~~~--~~--~~~---~~~------~~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~ 142 (267)
T cd07396 76 VHHVLGNHDLYNPS--RE--YLL---LYT------LLGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNS 142 (267)
T ss_pred EEEecCcccccccc--Hh--hhh---ccc------ccCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhc
Confidence 99999999985211 00 000 000 01234568999999999999999531
Q ss_pred -------------C--CCChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhc-CccEE
Q 018421 164 -------------F--VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVDVV 227 (356)
Q Consensus 164 -------------~--~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~lv 227 (356)
+ ...++|++||+++|+++.. +...+||++|+|++...... ......++.+.++++++ +|+++
T Consensus 143 ~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~-~~~~viV~~Hhp~~~~~~~~-~~~~~~~~~~~~ll~~~~~V~~v 220 (267)
T cd07396 143 NLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADA-NGEKVIIFSHFPLHPESTSP-HGLLWNHEEVLSILRAYGCVKAC 220 (267)
T ss_pred hhhhhccCccceeccCcCCHHHHHHHHHHHHHHHh-cCCeEEEEEeccCCCCCCCc-cccccCHHHHHHHHHhCCCEEEE
Confidence 0 1247899999999998632 33578999999997654311 11112256788999995 89999
Q ss_pred EeccccceeeeeeecCceecccCCcccccCCCCCCEEEEeCCCCC
Q 018421 228 FAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGN 272 (356)
Q Consensus 228 lsGH~H~y~r~~~~~~~~~~v~~g~~~~~~~~~g~~~iv~G~gG~ 272 (356)
|+||+|.++... .+|+.|+++|+-..
T Consensus 221 ~~GH~H~~~~~~-------------------~~gi~~~~~~a~~~ 246 (267)
T cd07396 221 ISGHDHEGGYAQ-------------------RHGIHFLTLEGMVE 246 (267)
T ss_pred EcCCcCCCCccc-------------------cCCeeEEEechhhc
Confidence 999999987432 35688998886543
No 10
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.91 E-value=1.3e-22 Score=185.67 Aligned_cols=229 Identities=16% Similarity=0.152 Sum_probs=138.3
Q ss_pred ccCeEEEEEecCCCCC---------CcH----HHHHHHHHc--CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhh
Q 018421 34 LLTSLESLVSDLGQTY---------NSL----STLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA 98 (356)
Q Consensus 34 ~~~~~f~v~gD~g~~~---------~~~----~~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~ 98 (356)
..+++|+.++|+|... +.. ++++.+.+. +||+||++||++.... ...++.+.+.++.+
T Consensus 12 ~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~------~~~~~~~~~~l~~l- 84 (275)
T PRK11148 12 EARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS------SEAYQHFAEGIAPL- 84 (275)
T ss_pred CCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC------HHHHHHHHHHHhhc-
Confidence 4789999999999632 112 234444443 6999999999996422 22344454444443
Q ss_pred cCCCeEEcccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCC----CCChHHHHHH
Q 018421 99 AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF----VKYTPQWEWL 174 (356)
Q Consensus 99 ~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~----~~~~~Q~~wL 174 (356)
.+|+++++||||.... +..+.....+ ...++.+..++++||+|||.... ....+|++||
T Consensus 85 -~~Pv~~v~GNHD~~~~--------~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~~~G~l~~~ql~wL 147 (275)
T PRK11148 85 -RKPCVWLPGNHDFQPA--------MYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGVPHGELSEYQLEWL 147 (275)
T ss_pred -CCcEEEeCCCCCChHH--------HHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCCcCCEeCHHHHHHH
Confidence 4799999999998411 1111111111 11223344567999999996432 1357899999
Q ss_pred HHHHccccCCCCCeEEEEEecccccCCCC-cccccHHHHHHHHHHHHhc-CccEEEeccccceeeeeeecCceecccCCc
Q 018421 175 REELKKVDREKTPWLIVLMHVPIYNSNEA-HFMEGESMRAAFESWFVRY-KVDVVFAGHVHAYERSYRISNLHYNISSGD 252 (356)
Q Consensus 175 ~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~-~~~~~~~~~~~l~~l~~~~-~v~lvlsGH~H~y~r~~~~~~~~~~v~~g~ 252 (356)
+++|+++ +.+.+||++||||...+.. .........+++.++++++ +|+++|+||+|......
T Consensus 148 ~~~L~~~---~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~------------- 211 (275)
T PRK11148 148 ERKLADA---PERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLD------------- 211 (275)
T ss_pred HHHHhhC---CCCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhce-------------
Confidence 9999985 2234566666655433321 1011112346889999998 89999999999854321
Q ss_pred ccccCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCceEEEEEEEc
Q 018421 253 CFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRN 315 (356)
Q Consensus 253 ~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~ 315 (356)
.+|+.++++++.+..... ..+.+ ......+||..+++.+++.+..+..+-
T Consensus 212 ------~~gi~~~~~ps~~~q~~~------~~~~~-~~~~~~~g~~~~~l~~~g~~~~~~~~~ 261 (275)
T PRK11148 212 ------WNGRRLLATPSTCVQFKP------HCTNF-TLDTVAPGWRELELHADGSLETEVHRL 261 (275)
T ss_pred ------ECCEEEEEcCCCcCCcCC------CCCcc-ccccCCCcEEEEEEcCCCcEEEEEEEc
Confidence 246777777766643211 01111 222335799999997666666555553
No 11
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.90 E-value=6.4e-23 Score=185.32 Aligned_cols=189 Identities=16% Similarity=0.184 Sum_probs=122.4
Q ss_pred EEEEecCCCCCCc-HH-------HHHHHHHcCCcEEEEcCccccCCCCC---ccccchhHHHHHHHHHHhhc--CCCeEE
Q 018421 39 ESLVSDLGQTYNS-LS-------TLEHYMESGAQTVLFLGDLSYADRYQ---FIDVGVRWDSWGRFVERSAA--YQPWIW 105 (356)
Q Consensus 39 f~v~gD~g~~~~~-~~-------~l~~~~~~~~d~vl~~GD~vy~~~~~---~~~~~~~~~~~~~~~~~~~~--~~P~~~ 105 (356)
|+.++|+|.+... .. .++.+.+.+||+||++||+++..... ......+|+.|.+.+..... ..|++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 6899999976531 11 23344455999999999999653321 11124577777777655433 489999
Q ss_pred cccCccccccccCCcc-cccccccccccCCcCCCCCCCCceEEE--EeCCEEEEEEcCCCC----------CCCChHHHH
Q 018421 106 SAGNHEIEYMTYMGEV-VPFKSYLHRYPTPHLASKSSSPLWYAI--RRASAHIIVLSSYSP----------FVKYTPQWE 172 (356)
Q Consensus 106 v~GNHD~~~~~~~~~~-~~~~~~~~~~~~P~~~~~~~~~~~ys~--~~g~~~fi~lds~~~----------~~~~~~Q~~ 172 (356)
++||||.......... ..|..|...+ ++ ...+|.+ ..|+++||+|||... .....+|++
T Consensus 82 v~GNHD~~~~~~~~~~~~~~~~y~~~~-~~-------~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~ 153 (256)
T cd07401 82 IRGNHDLFNIPSLDSENNYYRKYSATG-RD-------GSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLD 153 (256)
T ss_pred eCCCCCcCCCCCccchhhHHHHhheec-CC-------CccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHH
Confidence 9999999522111111 1111222111 11 1223333 358999999999642 123488999
Q ss_pred HHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeeeee
Q 018421 173 WLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRI 241 (356)
Q Consensus 173 wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~ 241 (356)
||++.|+++ .+.+++||++|+|+...... .....+ .+.+++++++|+++||||.|.+++..|+
T Consensus 154 wL~~~L~~~--~~~~~~IV~~HhP~~~~~~~---~~~~~~-~~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 154 RLEKELEKS--TNSNYTIWFGHYPTSTIISP---SAKSSS-KFKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHHhc--ccCCeEEEEEcccchhccCC---CcchhH-HHHHHHHhcCCcEEEeCCccCCCcceee
Confidence 999999975 34468999999998653221 111222 3899999999999999999999996665
No 12
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.87 E-value=3.5e-21 Score=169.46 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=107.5
Q ss_pred eEEEEEecCCCCCC-cH----HHHHHH----HHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhh-cCCCeEEc
Q 018421 37 SLESLVSDLGQTYN-SL----STLEHY----MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQPWIWS 106 (356)
Q Consensus 37 ~~f~v~gD~g~~~~-~~----~~l~~~----~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v 106 (356)
++|++++|+|.... .. +.++.+ .+.+||+|+++||+++.... ..+|+.+.+.++.+. ..+|++++
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~-----~~~~~~~~~~~~~l~~~~~p~~~~ 75 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDN-----DAEWEAADKAFARLDKAGIPYSVL 75 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCC-----HHHHHHHHHHHHHHHHcCCcEEEE
Confidence 58999999997543 21 223333 33489999999999975431 357888888888886 56999999
Q ss_pred ccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCC
Q 018421 107 AGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKT 186 (356)
Q Consensus 107 ~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~ 186 (356)
+||||. ++.+|+. ...+|++||+++|++. +.
T Consensus 76 ~GNHD~------------------------------------------~~~ld~~----~~~~ql~WL~~~L~~~---~~ 106 (214)
T cd07399 76 AGNHDL------------------------------------------VLALEFG----PRDEVLQWANEVLKKH---PD 106 (214)
T ss_pred CCCCcc------------------------------------------hhhCCCC----CCHHHHHHHHHHHHHC---CC
Confidence 999993 1222221 2378999999999974 33
Q ss_pred CeEEEEEecccccCCCCcccc-----cHHHHHHHHHHHHhc-CccEEEeccccceeeee
Q 018421 187 PWLIVLMHVPIYNSNEAHFME-----GESMRAAFESWFVRY-KVDVVFAGHVHAYERSY 239 (356)
Q Consensus 187 ~~~Iv~~H~P~~~~~~~~~~~-----~~~~~~~l~~l~~~~-~v~lvlsGH~H~y~r~~ 239 (356)
.++||++|||++..+...... ....++.|.++++++ +|+++||||.|.+.+..
T Consensus 107 ~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~ 165 (214)
T cd07399 107 RPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTT 165 (214)
T ss_pred CCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEE
Confidence 468999999998655422111 123456788999998 79999999999988765
No 13
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.85 E-value=4.1e-20 Score=180.63 Aligned_cols=231 Identities=19% Similarity=0.205 Sum_probs=117.5
Q ss_pred CCCCCCCCEEEEEEEE-----EecceeeeecchhhhcccCeEEEEEecCCCCCCcHHHHHHHHH-cCCcEEEEcCccccC
Q 018421 2 ALSMIPSTITRLGVAI-----LLENFGFKRLQRLILMLLTSLESLVSDLGQTYNSLSTLEHYME-SGAQTVLFLGDLSYA 75 (356)
Q Consensus 2 ~~gL~p~t~Y~y~v~~-----~s~~~~f~t~~~~~~~~~~~~f~v~gD~g~~~~~~~~l~~~~~-~~~d~vl~~GD~vy~ 75 (356)
.+||+|+|.|+|||.. .+...+|+|+|... ...+||++.+..+.......++.++.+ .+|||+|++||.+|.
T Consensus 68 v~gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~--~~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l~lGD~IY~ 145 (453)
T PF09423_consen 68 VTGLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGD--PDPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVLHLGDQIYE 145 (453)
T ss_dssp E-S--TT-EEEEEEEE--TTEE---EEEE--TT-------EEEEEE----CCC---HHHHHHTT-S--SEEEE-S-SS--
T ss_pred cCCCCCCceEEEEEEEecCCCCCCceEEEcCCCCC--CCceEEEEECCCCcccChHHHHHhhhccCCCcEEEEeCCeeec
Confidence 4799999999999995 57899999996643 356999999998765555778888888 599999999999999
Q ss_pred CCCCcc---------------ccchhHHHHHH---------HHHHhhcCCCeEEcccCccccccccCCcc-------ccc
Q 018421 76 DRYQFI---------------DVGVRWDSWGR---------FVERSAAYQPWIWSAGNHEIEYMTYMGEV-------VPF 124 (356)
Q Consensus 76 ~~~~~~---------------~~~~~~~~~~~---------~~~~~~~~~P~~~v~GNHD~~~~~~~~~~-------~~~ 124 (356)
+..... ......+.|.. .++.+.+.+|+++++-+||+..+...... ..+
T Consensus 146 d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~ 225 (453)
T PF09423_consen 146 DGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDF 225 (453)
T ss_dssp --TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-STT---HHHH
T ss_pred cCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccccccccccch
Confidence 853000 00001112222 23344567899999999999522211111 011
Q ss_pred --------ccccccccCCcCC---CCCCCCceEEEEeCC-EEEEEEcCCCCC-----------------C----CChHHH
Q 018421 125 --------KSYLHRYPTPHLA---SKSSSPLWYAIRRAS-AHIIVLSSYSPF-----------------V----KYTPQW 171 (356)
Q Consensus 125 --------~~~~~~~~~P~~~---~~~~~~~~ys~~~g~-~~fi~lds~~~~-----------------~----~~~~Q~ 171 (356)
..|.+. +|... .......|++|.+|+ +.|++||+...- . .+.+|+
T Consensus 226 ~~~~~~a~~ay~e~--~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~ 303 (453)
T PF09423_consen 226 QDRRRAAYQAYFEY--QPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQW 303 (453)
T ss_dssp HHHHHHHHHHHHHH--S---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHH
T ss_pred HHHHHHHHHHHHhh--cCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHH
Confidence 112221 23221 112345688999999 999999995311 0 257899
Q ss_pred HHHHHHHccccCCCCCeEEEEEecccccCCC-----------CcccccHHHHHHHHHHHHhcCcc--EEEeccccceeee
Q 018421 172 EWLREELKKVDREKTPWLIVLMHVPIYNSNE-----------AHFMEGESMRAAFESWFVRYKVD--VVFAGHVHAYERS 238 (356)
Q Consensus 172 ~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~-----------~~~~~~~~~~~~l~~l~~~~~v~--lvlsGH~H~y~r~ 238 (356)
+||++.|++ +.++|+||+.-.|+..... ..+.....-|++|.++|++.++. ++|||..|.....
T Consensus 304 ~wL~~~L~~---s~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~~ 380 (453)
T PF09423_consen 304 DWLEDWLAS---SQATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHASAAS 380 (453)
T ss_dssp HHHHHHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSEEEE
T ss_pred HHHHHHHhc---CCCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchheee
Confidence 999999998 4578999998887644321 12233455688999999888764 8899999997654
Q ss_pred e
Q 018421 239 Y 239 (356)
Q Consensus 239 ~ 239 (356)
.
T Consensus 381 ~ 381 (453)
T PF09423_consen 381 R 381 (453)
T ss_dssp E
T ss_pred e
Confidence 4
No 14
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.82 E-value=1.1e-19 Score=168.24 Aligned_cols=194 Identities=18% Similarity=0.235 Sum_probs=122.8
Q ss_pred EEEecCCCCCCcH----HHHHHHHHc--CCcEEEEcCccccCCCCCccccch---hHHHHHHHHHHhhcCCCeEEcccCc
Q 018421 40 SLVSDLGQTYNSL----STLEHYMES--GAQTVLFLGDLSYADRYQFIDVGV---RWDSWGRFVERSAAYQPWIWSAGNH 110 (356)
Q Consensus 40 ~v~gD~g~~~~~~----~~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~---~~~~~~~~~~~~~~~~P~~~v~GNH 110 (356)
.-+|+.+. +... .+++.+.+. +|||||++||++............ .+..+.+.++.....+|+++++|||
T Consensus 41 ~~~G~~~C-D~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNH 119 (296)
T cd00842 41 GPWGDYGC-DSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNH 119 (296)
T ss_pred CCCcCcCC-CCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCC
Confidence 35677763 3333 455566666 899999999999765442211001 1344445555555679999999999
Q ss_pred cccccccCC----ccccccccccccc--CCcCCC-CCCCCceEEEE-eCCEEEEEEcCCCCC-----------CCChHHH
Q 018421 111 EIEYMTYMG----EVVPFKSYLHRYP--TPHLAS-KSSSPLWYAIR-RASAHIIVLSSYSPF-----------VKYTPQW 171 (356)
Q Consensus 111 D~~~~~~~~----~~~~~~~~~~~~~--~P~~~~-~~~~~~~ys~~-~g~~~fi~lds~~~~-----------~~~~~Q~ 171 (356)
|........ ....+..+...|. +|.... ....+.||++. .++++||+|||.... .....|+
T Consensus 120 D~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql 199 (296)
T cd00842 120 DSYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQL 199 (296)
T ss_pred CCCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHH
Confidence 985221110 0111111222221 222111 11246789988 789999999996421 1236899
Q ss_pred HHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcC--ccEEEeccccceeee
Q 018421 172 EWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYK--VDVVFAGHVHAYERS 238 (356)
Q Consensus 172 ~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--v~lvlsGH~H~y~r~ 238 (356)
+||+++|+++++ +...++|++|+|+...... ......+++.+++++++ |.++|+||+|..+..
T Consensus 200 ~WL~~~L~~a~~-~~~~v~I~~HiPp~~~~~~---~~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~ 264 (296)
T cd00842 200 QWLEDELQEAEQ-AGEKVWIIGHIPPGVNSYD---TLENWSERYLQIINRYSDTIAGQFFGHTHRDEFR 264 (296)
T ss_pred HHHHHHHHHHHH-CCCeEEEEeccCCCCcccc---cchHHHHHHHHHHHHHHHhhheeeecccccceEE
Confidence 999999998743 2346788999999765322 11345788999999996 778999999996654
No 15
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.78 E-value=2.7e-18 Score=154.54 Aligned_cols=170 Identities=20% Similarity=0.244 Sum_probs=105.4
Q ss_pred HHHHHHH-cCCcEEEEcCccccCCCCCccccchhHHH-HHHHHHHh---hcCCCeEEcccCccccccccCCccccccccc
Q 018421 54 TLEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERS---AAYQPWIWSAGNHEIEYMTYMGEVVPFKSYL 128 (356)
Q Consensus 54 ~l~~~~~-~~~d~vl~~GD~vy~~~~~~~~~~~~~~~-~~~~~~~~---~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~ 128 (356)
....+.+ .+||+||++||+++..... . ..+|.. +.++.+-+ ....|++.||||||........ ......|.
T Consensus 36 ~~~~~~~~l~PD~vv~lGDL~d~G~~~--~-~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~-~~~~~rf~ 111 (257)
T cd08163 36 NWRYMQKQLKPDSTIFLGDLFDGGRDW--A-DEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVV-LPVRQRFE 111 (257)
T ss_pred HHHHHHHhcCCCEEEEecccccCCeeC--c-HHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCC-HHHHHHHH
Confidence 3444444 3999999999999753221 1 345533 33333322 2247999999999985432110 11123344
Q ss_pred ccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCC-----CCChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCC
Q 018421 129 HRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF-----VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEA 203 (356)
Q Consensus 129 ~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~-----~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~ 203 (356)
+.|. ..++++++|+++||+|||.... ....+|.+||++.|+.. .....+||++|+|+|.....
T Consensus 112 ~~Fg----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~p~ILl~H~Plyr~~~~ 179 (257)
T cd08163 112 KYFG----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMK--VKSKPRILLTHVPLYRPPNT 179 (257)
T ss_pred HHhC----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhcc--CCCCcEEEEeccccccCCCC
Confidence 4442 2357999999999999996322 13467999999998864 23346899999999865321
Q ss_pred ccc------------ccH----HH-HHHHHHHHHhcCccEEEeccccceeeee
Q 018421 204 HFM------------EGE----SM-RAAFESWFVRYKVDVVFAGHVHAYERSY 239 (356)
Q Consensus 204 ~~~------------~~~----~~-~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 239 (356)
.+. .+. -+ .+.-..++...++.+|||||+|.|=...
T Consensus 180 ~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 180 SCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred CCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 111 000 11 1233356677799999999999986543
No 16
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.78 E-value=2.8e-19 Score=150.53 Aligned_cols=189 Identities=21% Similarity=0.217 Sum_probs=98.5
Q ss_pred eEEEEEecCCCCCCcH----HHHH-HHHHcCCcEEEEcCccccCCCCCccccchhHHHHH-HHHHHhhcCCCeEEcccCc
Q 018421 37 SLESLVSDLGQTYNSL----STLE-HYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWG-RFVERSAAYQPWIWSAGNH 110 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~----~~l~-~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~~~v~GNH 110 (356)
+||+++||+|...... ..+. ...+.++|+||++||+++..... ..+.... ..........|+++++|||
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPS-----EEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHH-----HHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeecccccccccc-----ccchhhhccchhhhhcccccccccccc
Confidence 5899999999875433 2222 23345999999999999765431 1111111 1233445678999999999
Q ss_pred cccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCC---hHHHHHHHHHHccccCCCCC
Q 018421 111 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKY---TPQWEWLREELKKVDREKTP 187 (356)
Q Consensus 111 D~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~---~~Q~~wL~~~L~~~~~~~~~ 187 (356)
|+........................ ....+........................ ..+..|+...++. .+.+
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 150 (200)
T PF00149_consen 76 DYYSGNSFYGFYDYQFEDYYGNYNYY--YSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEA---KNDD 150 (200)
T ss_dssp SSHHHHHHHHHHHHHHSSEEECSSEE--ECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHE---EEES
T ss_pred ccceeccccccccccccccccccccc--cccCcceeeecccccccccccccccccccccchhccccccccccc---cccc
Confidence 99632110000000000000000000 00000001111122222222111111111 2233344334333 4567
Q ss_pred eEEEEEecccccCCCCccc--ccHHHHHHHHHHHHhcCccEEEeccccce
Q 018421 188 WLIVLMHVPIYNSNEAHFM--EGESMRAAFESWFVRYKVDVVFAGHVHAY 235 (356)
Q Consensus 188 ~~Iv~~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~v~lvlsGH~H~y 235 (356)
++||++|+|+++....... .....++.+..++++++|+++|+||+|.|
T Consensus 151 ~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 151 PVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 9999999999977653211 11345778899999999999999999986
No 17
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.75 E-value=2.7e-17 Score=146.64 Aligned_cols=190 Identities=19% Similarity=0.208 Sum_probs=115.1
Q ss_pred EEEEecCCCCC--------Cc---HHHHHHHHHc------CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-C
Q 018421 39 ESLVSDLGQTY--------NS---LSTLEHYMES------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-Y 100 (356)
Q Consensus 39 f~v~gD~g~~~--------~~---~~~l~~~~~~------~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~ 100 (356)
+.+++|+|... .. .+.++++.+. +||+||++||+++.... +.+...++.+.. .
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~---------~~~~~~l~~l~~l~ 71 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKL---------EEAKLDLAWIDALP 71 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCCh---------HHHHHHHHHHHhCC
Confidence 35889998662 22 3455555554 99999999999843211 222233333322 3
Q ss_pred CCeEEcccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCC----CC---------C--
Q 018421 101 QPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS----PF---------V-- 165 (356)
Q Consensus 101 ~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~----~~---------~-- 165 (356)
.|+++|+||||+... .. ..+.+.+ +..+... ....++.++++.|++++... .+ .
T Consensus 72 ~~v~~V~GNHD~~~~----~~---~~~~~~l--~~~~~~~--~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~ 140 (232)
T cd07393 72 GTKVLLKGNHDYWWG----SA---SKLRKAL--EESRLAL--LFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEED 140 (232)
T ss_pred CCeEEEeCCccccCC----CH---HHHHHHH--HhcCeEE--eccCcEEECCEEEEEEEeeCCCCCccccccccccchhH
Confidence 589999999998321 11 1111111 0000000 00235567889999986311 11 0
Q ss_pred --CChHHHHHHHHHHccccCCC-CCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeeeeec
Q 018421 166 --KYTPQWEWLREELKKVDREK-TPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRIS 242 (356)
Q Consensus 166 --~~~~Q~~wL~~~L~~~~~~~-~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~ 242 (356)
....|++||++.|+.+.... ..++|+++|+|++..... .+.+..++++++++++|+||+|..++..|+.
T Consensus 141 ~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~--------~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~ 212 (232)
T cd07393 141 EKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENGD--------DSPISKLIEEYGVDICVYGHLHGVGRDRAIN 212 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCC--------HHHHHHHHHHcCCCEEEECCCCCCccccccc
Confidence 12568999999999753222 246899999998764321 1356778888999999999999998877653
Q ss_pred CceecccCCcccccCCCCCCEEEEeCCC
Q 018421 243 NLHYNISSGDCFPVPDKSAPVYITVGDG 270 (356)
Q Consensus 243 ~~~~~v~~g~~~~~~~~~g~~~iv~G~g 270 (356)
.. .+|+.|.++.++
T Consensus 213 ~~--------------~~gi~~~~~~~~ 226 (232)
T cd07393 213 GE--------------RGGIRYQLVSAD 226 (232)
T ss_pred ce--------------ECCEEEEEEcch
Confidence 21 356667777654
No 18
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.71 E-value=3.1e-16 Score=136.65 Aligned_cols=150 Identities=20% Similarity=0.220 Sum_probs=97.6
Q ss_pred CeEEEEEecCCCCCCc---------HH---HHHHHH-HcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-CC
Q 018421 36 TSLESLVSDLGQTYNS---------LS---TLEHYM-ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQ 101 (356)
Q Consensus 36 ~~~f~v~gD~g~~~~~---------~~---~l~~~~-~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 101 (356)
+++|++++|+|..... .. .+.+++ +.+||+||++||+++...... ..+..+.++++.+.. .+
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~----~~~~~~~~~~~~l~~~~~ 77 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTND----NSTSALDKAVSPMIDRKI 77 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCch----HHHHHHHHHHHHHHHcCC
Confidence 5899999999975431 12 233333 348999999999997644321 123556666666644 68
Q ss_pred CeEEcccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHccc
Q 018421 102 PWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKV 181 (356)
Q Consensus 102 P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~ 181 (356)
|+++++||||.. . .....|++||+++|++.
T Consensus 78 p~~~~~GNHD~~-------------------------------------------------g-~l~~~ql~wL~~~l~~~ 107 (199)
T cd07383 78 PWAATFGNHDGY-------------------------------------------------D-WIRPSQIEWFKETSAAL 107 (199)
T ss_pred CEEEECccCCCC-------------------------------------------------C-CCCHHHHHHHHHHHHHH
Confidence 999999999921 0 12368999999999985
Q ss_pred c--CCCCCeEEEEEecccccCCCC---------cccc---cHHHHHHH-HHHHHhcCccEEEeccccceeeee
Q 018421 182 D--REKTPWLIVLMHVPIYNSNEA---------HFME---GESMRAAF-ESWFVRYKVDVVFAGHVHAYERSY 239 (356)
Q Consensus 182 ~--~~~~~~~Iv~~H~P~~~~~~~---------~~~~---~~~~~~~l-~~l~~~~~v~lvlsGH~H~y~r~~ 239 (356)
. +....+.++++|||+...... ...+ .......+ ..+.+..+|+++|+||+|.++...
T Consensus 108 ~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~ 180 (199)
T cd07383 108 KKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCG 180 (199)
T ss_pred hhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceec
Confidence 3 123457899999998653210 0001 11122233 344466799999999999976544
No 19
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.71 E-value=3.6e-16 Score=134.62 Aligned_cols=166 Identities=14% Similarity=0.115 Sum_probs=100.9
Q ss_pred EEEEecCCCCCCcHHHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhh-cCCCeEEcccCcccccccc
Q 018421 39 ESLVSDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQPWIWSAGNHEIEYMTY 117 (356)
Q Consensus 39 f~v~gD~g~~~~~~~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD~~~~~~ 117 (356)
++++||+|........ ..+.+.++|+||++||+++.... +.+..+ +.+. ..+|+++++||||.....
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~~~~---------~~~~~~-~~l~~~~~p~~~v~GNHD~~~~~- 68 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNFGGK---------EAAVEI-NLLLAIGVPVLAVPGNCDTPEIL- 68 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCcCCH---------HHHHHH-HHHHhcCCCEEEEcCCCCCHHHH-
Confidence 4789999986533322 33445589999999999964321 111111 2222 257999999999974210
Q ss_pred CCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCC--C----CCChHHHHHHHHHHccccCCCCCeEEE
Q 018421 118 MGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP--F----VKYTPQWEWLREELKKVDREKTPWLIV 191 (356)
Q Consensus 118 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~--~----~~~~~Q~~wL~~~L~~~~~~~~~~~Iv 191 (356)
......... ..+ ..+.++++.|+++++... + ....+|++|+ +.|.. .+.+..|+
T Consensus 69 -------~~~~~~~~~-------~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~---~~~~~~il 128 (188)
T cd07392 69 -------GLLTSAGLN-------LHG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNN---LLAKNLIL 128 (188)
T ss_pred -------HhhhcCcEe-------cCC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhc---cCCCCeEE
Confidence 000000000 011 245678999999997422 1 2346788998 44443 33457899
Q ss_pred EEecccccCCCCccccc-HHHHHHHHHHHHhcCccEEEecccccee
Q 018421 192 LMHVPIYNSNEAHFMEG-ESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 192 ~~H~P~~~~~~~~~~~~-~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
++|+|++.......... ....+.+..++++++++++|+||.|.-.
T Consensus 129 v~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 129 VTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred EECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 99999976311111111 1124578888889999999999999854
No 20
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.70 E-value=1.1e-16 Score=149.18 Aligned_cols=226 Identities=16% Similarity=0.142 Sum_probs=152.9
Q ss_pred CCCCCCCCEEEEEEEE---EecceeeeecchhhhcccCeEEEEEecCCCCC---CcHHHHHHHHHcCCcEEEEcCccccC
Q 018421 2 ALSMIPSTITRLGVAI---LLENFGFKRLQRLILMLLTSLESLVSDLGQTY---NSLSTLEHYMESGAQTVLFLGDLSYA 75 (356)
Q Consensus 2 ~~gL~p~t~Y~y~v~~---~s~~~~f~t~~~~~~~~~~~~f~v~gD~g~~~---~~~~~l~~~~~~~~d~vl~~GD~vy~ 75 (356)
++||+|++.|.||+.. .|.+.+|+|+|... -+++++.+||..+.. ..-.+.+.+.+.+|||+||+||.+|.
T Consensus 105 ~~gL~P~~~yfYRf~~~~~~spvGrtrTapa~~---~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH~GDyIYe 181 (522)
T COG3540 105 LRGLSPDQDYFYRFKAGDERSPVGRTRTAPAPG---RAIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIHLGDYIYE 181 (522)
T ss_pred ccCCCCCceEEEEEeeCCccccccccccCCCCC---CcchhhhhhhccccccccchhHHHHHHHhcCCCEEEEcCCeeec
Confidence 6899999999999995 67899999999874 477788888865543 34467777888899999999999998
Q ss_pred CCCCccc------------------------cchhHHHHH--HHHHHhhcCCCeEEcccCccccccccCCccc-------
Q 018421 76 DRYQFID------------------------VGVRWDSWG--RFVERSAAYQPWIWSAGNHEIEYMTYMGEVV------- 122 (356)
Q Consensus 76 ~~~~~~~------------------------~~~~~~~~~--~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~------- 122 (356)
.+....+ +..+|..+. ..++......||++.+..||...+...+..+
T Consensus 182 yg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~ 261 (522)
T COG3540 182 YGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDE 261 (522)
T ss_pred cCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCCh
Confidence 7763111 122222211 1233334568999999999985321111111
Q ss_pred -cc--------ccccccccCCcCCCCC--CCCceEEEEeCC-EEEEEEcCCCCC------C----------------CCh
Q 018421 123 -PF--------KSYLHRYPTPHLASKS--SSPLWYAIRRAS-AHIIVLSSYSPF------V----------------KYT 168 (356)
Q Consensus 123 -~~--------~~~~~~~~~P~~~~~~--~~~~~ys~~~g~-~~fi~lds~~~~------~----------------~~~ 168 (356)
.+ ..|.+ .||...... ....|-+|.+|+ +.|.+||+.+.- + .+.
T Consensus 262 k~~~~r~a~A~qAyyE--~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~ 339 (522)
T COG3540 262 KDFVLRAAAARQAYYE--HMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGE 339 (522)
T ss_pred HHHHHHHHHHHHHHHH--hCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhh
Confidence 11 11222 355543221 346788999998 579999985321 0 247
Q ss_pred HHHHHHHHHHccccCCCCCeEEEEEeccccc----CCC---------CcccccHHHHHHHHHHHHhcCcc--EEEecccc
Q 018421 169 PQWEWLREELKKVDREKTPWLIVLMHVPIYN----SNE---------AHFMEGESMRAAFESWFVRYKVD--VVFAGHVH 233 (356)
Q Consensus 169 ~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~----~~~---------~~~~~~~~~~~~l~~l~~~~~v~--lvlsGH~H 233 (356)
+|.+||+..|.. ++..|.|+..-.|+-. ... ..+.+...-|+.|..+++..++. ++|+|.+|
T Consensus 340 ~QeqWLk~~L~~---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH 416 (522)
T COG3540 340 QQEQWLKRGLGA---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVH 416 (522)
T ss_pred HHHHHHHhhhhh---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhH
Confidence 899999999998 6788999988888621 110 01112234588999999988765 89999999
Q ss_pred ce
Q 018421 234 AY 235 (356)
Q Consensus 234 ~y 235 (356)
..
T Consensus 417 ~~ 418 (522)
T COG3540 417 YS 418 (522)
T ss_pred HH
Confidence 74
No 21
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.68 E-value=6.5e-16 Score=138.47 Aligned_cols=176 Identities=16% Similarity=0.111 Sum_probs=103.2
Q ss_pred EEEEEecCCCCCCc---HH----HHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCc
Q 018421 38 LESLVSDLGQTYNS---LS----TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 110 (356)
Q Consensus 38 ~f~v~gD~g~~~~~---~~----~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 110 (356)
||++++|+|..... .. .++.+.+.++|+||++||++... . +...+.+.+..+ ...|++.++|||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~--~------~~~~~~~~l~~~-~~~pv~~v~GNH 71 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDF--Q------RSLPFIEKLQEL-KGIKVTFNAGNH 71 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccch--h------hHHHHHHHHHHh-cCCcEEEECCCC
Confidence 58899999964321 22 33444556899999999999531 1 112233333322 358999999999
Q ss_pred cccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCC--------------------------C
Q 018421 111 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSP--------------------------F 164 (356)
Q Consensus 111 D~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~--------------------------~ 164 (356)
|+..... +..+...+. + ....+.++.+..++++|++++-..+ .
T Consensus 72 D~~~~~~------~~~~~~~~~-~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~ 140 (239)
T TIGR03729 72 DMLKDLT------YEEIESNDS-P----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKR 140 (239)
T ss_pred CCCCCCC------HHHHHhccc-h----hhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCC
Confidence 9841110 111111100 0 0011222333346788888883111 1
Q ss_pred C-----CChHHHHHHHHHHccccCCCCCeEEEEEecccccCCC------Cccccc--HHHHHHHHHHHHhcCccEEEecc
Q 018421 165 V-----KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNE------AHFMEG--ESMRAAFESWFVRYKVDVVFAGH 231 (356)
Q Consensus 165 ~-----~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~------~~~~~~--~~~~~~l~~l~~~~~v~lvlsGH 231 (356)
. ....|++||++.|++. ..+.+||++||||..... ..+... ......|.+++++++++++|+||
T Consensus 141 ~~~~~~~~~~~l~~l~~~l~~~---~~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~GH 217 (239)
T TIGR03729 141 PMSDPERTAIVLKQLKKQLNQL---DNKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFGH 217 (239)
T ss_pred CCChHHHHHHHHHHHHHHHHhc---CCCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEECC
Confidence 1 1256899999999875 234589999999854211 111110 01136788889999999999999
Q ss_pred cccee
Q 018421 232 VHAYE 236 (356)
Q Consensus 232 ~H~y~ 236 (356)
.|.-.
T Consensus 218 ~H~~~ 222 (239)
T TIGR03729 218 LHRRF 222 (239)
T ss_pred ccCCC
Confidence 99854
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.68 E-value=9.3e-16 Score=145.64 Aligned_cols=94 Identities=13% Similarity=0.237 Sum_probs=71.4
Q ss_pred CCceEEEE-eCCEEEEEEcCCCCC-----CCChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcc-----cccHH
Q 018421 142 SPLWYAIR-RASAHIIVLSSYSPF-----VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHF-----MEGES 210 (356)
Q Consensus 142 ~~~~ys~~-~g~~~fi~lds~~~~-----~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~-----~~~~~ 210 (356)
+..||+|+ .++++||+|||.... ....+|++||+++|++. +.+++||++|||+++.+.... .....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 46799999 899999999997432 23589999999999973 446799999999987543110 01112
Q ss_pred HHHHHHHHHHhc-CccEEEeccccceeee
Q 018421 211 MRAAFESWFVRY-KVDVVFAGHVHAYERS 238 (356)
Q Consensus 211 ~~~~l~~l~~~~-~v~lvlsGH~H~y~r~ 238 (356)
..++|.++|+++ +|.++||||.|.....
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccc
Confidence 356899999998 8999999999986543
No 23
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.63 E-value=2.6e-15 Score=133.08 Aligned_cols=198 Identities=17% Similarity=0.027 Sum_probs=111.4
Q ss_pred CeEEEEEecCCCCCC-c----HHHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCc
Q 018421 36 TSLESLVSDLGQTYN-S----LSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 110 (356)
Q Consensus 36 ~~~f~v~gD~g~~~~-~----~~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 110 (356)
++||++++|+|.... . .+.++.+.+.+||+|+++||+++..... . +.+.+.++.+....|+++++|||
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~-----~--~~~~~~l~~l~~~~~v~~v~GNH 73 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDV-----L--ELLLELLKKLKAPLGVYAVLGNH 73 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchh-----h--HHHHHHHhccCCCCCEEEECCCc
Confidence 478999999998753 2 2334444556999999999999754321 0 34555666665678999999999
Q ss_pred cccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCCCeEE
Q 018421 111 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLI 190 (356)
Q Consensus 111 D~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~I 190 (356)
|+...... .+........+. ...+.+..+..++..+.++--. ......+++.+.++.. .+.++.|
T Consensus 74 D~~~~~~~----~~~~~l~~~~v~-----~L~~~~~~~~~~~~~i~i~G~~----~~~~~~~~~~~~~~~~--~~~~~~I 138 (223)
T cd07385 74 DYYSGDEE----NWIEALESAGIT-----VLRNESVEISVGGATIGIAGVD----DGLGRRPDLEKALKGL--DEDDPNI 138 (223)
T ss_pred ccccCchH----HHHHHHHHcCCE-----EeecCcEEeccCCeEEEEEecc----CccccCCCHHHHHhCC--CCCCCEE
Confidence 98532110 000111111110 0112334555555444333211 1112234566666654 3456899
Q ss_pred EEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeeeeecCcee---cccCCcccccCCCCCCEEEEe
Q 018421 191 VLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHY---NISSGDCFPVPDKSAPVYITV 267 (356)
Q Consensus 191 v~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~---~v~~g~~~~~~~~~g~~~iv~ 267 (356)
++.|.|.+. ..+.+.++|++++||+|..|...|....-. ....-....+..++..+||.+
T Consensus 139 ~l~H~P~~~-----------------~~~~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~Vs~ 201 (223)
T cd07385 139 LLAHQPDTA-----------------EEAAAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPYDYGLYRKGGSQLYVSR 201 (223)
T ss_pred EEecCCChh-----------------HHhcccCccEEEeccCCCCEEeccccccccchhhcCcccceEEEECCEEEEEcC
Confidence 999998531 112567999999999999997665432210 000000011223455677777
Q ss_pred CCCCC
Q 018421 268 GDGGN 272 (356)
Q Consensus 268 G~gG~ 272 (356)
|.|..
T Consensus 202 G~G~~ 206 (223)
T cd07385 202 GLGTW 206 (223)
T ss_pred CccCC
Confidence 77654
No 24
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.61 E-value=2e-14 Score=132.64 Aligned_cols=179 Identities=18% Similarity=0.187 Sum_probs=110.9
Q ss_pred eEEEEEecCCCC--C-CcHHHH----HHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccC
Q 018421 37 SLESLVSDLGQT--Y-NSLSTL----EHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 109 (356)
Q Consensus 37 ~~f~v~gD~g~~--~-~~~~~l----~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GN 109 (356)
++|+.++|.|.. . .....+ +.+...+||+||++||+++. +. ...++...++++......|++++|||
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~-~~-----~~~~~~~~~~l~~~~~~~~~~~vpGN 74 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND-GE-----PEEYRRLKELLARLELPAPVIVVPGN 74 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC-CC-----HHHHHHHHHHHhhccCCCceEeeCCC
Confidence 478999999987 3 233333 34444589999999999976 32 22334444555544456799999999
Q ss_pred ccccccccCCcccccccccccccCCcCCCCCCCCceEEEEe-CCEEEEEEcCCCCC----CCChHHHHHHHHHHccccCC
Q 018421 110 HEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRR-ASAHIIVLSSYSPF----VKYTPQWEWLREELKKVDRE 184 (356)
Q Consensus 110 HD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~-g~~~fi~lds~~~~----~~~~~Q~~wL~~~L~~~~~~ 184 (356)
||..... ...+...+... ...+-.... ++++++.+|+.... .....|++||++.|+.....
T Consensus 75 HD~~~~~-------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~ 140 (301)
T COG1409 75 HDARVVN-------GEAFSDQFFNR-------YAVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPER 140 (301)
T ss_pred CcCCchH-------HHHhhhhhccc-------CcceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccc
Confidence 9985211 11111111110 011111112 67899999997542 24689999999999985322
Q ss_pred CCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcC--ccEEEeccccce
Q 018421 185 KTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYK--VDVVFAGHVHAY 235 (356)
Q Consensus 185 ~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--v~lvlsGH~H~y 235 (356)
....+|+++|||+.................+..++..++ |+++|+||.|.-
T Consensus 141 ~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 141 AKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred cCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 112567777777765443322222223456667777887 999999999986
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.60 E-value=1.2e-14 Score=119.95 Aligned_cols=116 Identities=22% Similarity=0.235 Sum_probs=82.9
Q ss_pred EEEEecCCCCCCcH----H-------HHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcC-CCeEEc
Q 018421 39 ESLVSDLGQTYNSL----S-------TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY-QPWIWS 106 (356)
Q Consensus 39 f~v~gD~g~~~~~~----~-------~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~v 106 (356)
|+.++|+|.+.... . .++.+.+.++|+|+++||+++... ..+|+.+.++++.+... .|++.+
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~------~~~~~~~~~~~~~l~~~~~~~~~v 74 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGL------PEEFEEAREFLDALPAPLEPVLVV 74 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCC------HHHHHHHHHHHHHccccCCcEEEe
Confidence 46899998764321 1 122233459999999999997532 34566677777777554 699999
Q ss_pred ccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCC
Q 018421 107 AGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKT 186 (356)
Q Consensus 107 ~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~ 186 (356)
+||||.
T Consensus 75 ~GNHD~-------------------------------------------------------------------------- 80 (144)
T cd07400 75 PGNHDV-------------------------------------------------------------------------- 80 (144)
T ss_pred CCCCeE--------------------------------------------------------------------------
Confidence 999994
Q ss_pred CeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeee
Q 018421 187 PWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 238 (356)
Q Consensus 187 ~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 238 (356)
|+++|+|++....... .....++.+.+++++++++++++||+|.....
T Consensus 81 ---iv~~Hhp~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~ 128 (144)
T cd07400 81 ---IVVLHHPLVPPPGSGR-ERLLDAGDALKLLAEAGVDLVLHGHKHVPYVG 128 (144)
T ss_pred ---EEEecCCCCCCCcccc-ccCCCHHHHHHHHHHcCCCEEEECCCCCcCee
Confidence 8999999977543211 11114567899999999999999999996543
No 26
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.57 E-value=8.2e-14 Score=122.41 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=101.8
Q ss_pred CeEEEEEecCCCCCCcHHHH-HHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-CCCeEEcccCcccc
Q 018421 36 TSLESLVSDLGQTYNSLSTL-EHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 113 (356)
Q Consensus 36 ~~~f~v~gD~g~~~~~~~~l-~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 113 (356)
.-++++++|+|......+.+ +.+.+.++|+|+++||++..... .+.+.++++.+.. ..|+++++||||..
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~--------~~~~~~~l~~l~~l~~pv~~V~GNhD~~ 75 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAK--------SEDYAAFFRILGEAHLPTFYVPGPQDAP 75 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCC--------HHHHHHHHHHHHhcCCceEEEcCCCChH
Confidence 46799999999753333333 33334589999999999964311 1334555555543 47999999999963
Q ss_pred ccccCCcccccc-cccccccCCcCCCCCCCCceEEEEe-CCEEEEEEcCCCCC--CCChHHH----HHHHH-HHccccCC
Q 018421 114 YMTYMGEVVPFK-SYLHRYPTPHLASKSSSPLWYAIRR-ASAHIIVLSSYSPF--VKYTPQW----EWLRE-ELKKVDRE 184 (356)
Q Consensus 114 ~~~~~~~~~~~~-~~~~~~~~P~~~~~~~~~~~ys~~~-g~~~fi~lds~~~~--~~~~~Q~----~wL~~-~L~~~~~~ 184 (356)
.. + .+. .+......|.. ...... ...+ |+++|++|+..... ....+|. +|+.+ .|+...+.
T Consensus 76 v~----~--~l~~~~~~~~~~p~~--~~lh~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~~ 145 (224)
T cd07388 76 LW----E--YLREAYNAELVHPEI--RNVHET--FAFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWEL 145 (224)
T ss_pred HH----H--HHHHHhcccccCccc--eecCCC--eEEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHhC
Confidence 10 0 000 11100011110 011122 2334 56999999975433 2234442 56433 22222112
Q ss_pred CCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEecccc
Q 018421 185 KTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVH 233 (356)
Q Consensus 185 ~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H 233 (356)
..+..|+++|+||+..+..+ .-...+..+++++++.+++|||.|
T Consensus 146 ~~~~~VLv~H~PP~g~g~~h-----~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 146 KDYRKVFLFHTPPYHKGLNE-----QGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred CCCCeEEEECCCCCCCCCCc-----cCHHHHHHHHHHhCCCEEEEcCCc
Confidence 34478999999999764222 113467788899999999999999
No 27
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.56 E-value=2.5e-14 Score=120.94 Aligned_cols=145 Identities=17% Similarity=0.260 Sum_probs=84.8
Q ss_pred EEEEecCCCCCCcHHH-H-HHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccccccc
Q 018421 39 ESLVSDLGQTYNSLST-L-EHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMT 116 (356)
Q Consensus 39 f~v~gD~g~~~~~~~~-l-~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~ 116 (356)
|+++||+|........ + +.+.+.++|+|+++||+++.... ..+...........|+++++||||+..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~---------~~~~~~~~~~~~~~~v~~v~GNHD~~~-- 69 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDA---------PRFAPLLLALKGFEPVIYVPGNHEFYV-- 69 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcch---------HHHHHHHHhhcCCccEEEeCCCcceEE--
Confidence 4789999987543322 1 22234589999999999964321 112222333345689999999999831
Q ss_pred cCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCCCeEEEEEecc
Q 018421 117 YMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVP 196 (356)
Q Consensus 117 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P 196 (356)
.+ .. ...|+.+.. ...++.+|+.++++ +.+||++|||
T Consensus 70 ---------~~---~G---------~~~w~~~~~---------------~~~~~~~~~~~d~~-------~~~vv~~Hhp 106 (166)
T cd07404 70 ---------RI---IG---------TTLWSDISL---------------FGEAAARMRMNDFR-------GKTVVVTHHA 106 (166)
T ss_pred ---------EE---Ee---------eecccccCc---------------cchHHHHhCCCCCC-------CCEEEEeCCC
Confidence 00 00 011222211 01233344333332 3689999999
Q ss_pred cccCCCCc-c---cccHHHHHHHHHHHHhcCccEEEeccccceee
Q 018421 197 IYNSNEAH-F---MEGESMRAAFESWFVRYKVDVVFAGHVHAYER 237 (356)
Q Consensus 197 ~~~~~~~~-~---~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r 237 (356)
+...+... . ......++.+..++++.+|+++++||+|....
T Consensus 107 P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~ 151 (166)
T cd07404 107 PSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFD 151 (166)
T ss_pred CCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccce
Confidence 98754321 1 11123455677888889999999999998643
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.56 E-value=4.5e-14 Score=124.94 Aligned_cols=187 Identities=15% Similarity=0.083 Sum_probs=102.8
Q ss_pred EEEEEecCCCCCCc------------HHHHHHH----HHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhh-cC
Q 018421 38 LESLVSDLGQTYNS------------LSTLEHY----MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AY 100 (356)
Q Consensus 38 ~f~v~gD~g~~~~~------------~~~l~~~----~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~-~~ 100 (356)
||++++|+|.+... .++++++ .+.+||+||++||+++..... ...+..+.+.++.+. ..
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~----~~~~~~~~~~~~~~~~~~ 76 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPS----PEALELLIEALRRLKEAG 76 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCC----HHHHHHHHHHHHHHHHCC
Confidence 58999999976421 1233333 345999999999999654321 233455666666664 36
Q ss_pred CCeEEcccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHcc
Q 018421 101 QPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKK 180 (356)
Q Consensus 101 ~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~ 180 (356)
+|+++++||||...... .......+. .+..-.............+...++.|++++..... ....+.+++++.+..
T Consensus 77 ~~v~~~~GNHD~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-~~~~~~~~~~~~~~~ 152 (223)
T cd00840 77 IPVFIIAGNHDSPSRLG--ALSPLLALS-GLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRS-RLRDLLADAELRPRP 152 (223)
T ss_pred CCEEEecCCCCCccccc--cccchHhhC-cEEEEcccCcceeEEEeccCCeEEEEEECCCCCHH-HHHHHHHHHHHHhhc
Confidence 89999999999853211 000000000 00000000000111122333456888888754321 112334444555554
Q ss_pred ccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeee
Q 018421 181 VDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 238 (356)
Q Consensus 181 ~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 238 (356)
. .+....|+++|.|+.......... .......+...++|++++||.|..+..
T Consensus 153 ~--~~~~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 153 L--DPDDFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred c--CCCCcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCeee
Confidence 3 345679999999986543221100 122344466789999999999997653
No 29
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.56 E-value=1.4e-13 Score=125.58 Aligned_cols=196 Identities=14% Similarity=0.060 Sum_probs=108.4
Q ss_pred cCeEEEEEecCCCCCC-cH----HHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccC
Q 018421 35 LTSLESLVSDLGQTYN-SL----STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 109 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~-~~----~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GN 109 (356)
.++|+++++|+|.... .. +.++.+.+.+||+|+++||+++... ...++.+.+.++.+....|+++|+||
T Consensus 48 ~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~------~~~~~~~~~~L~~L~~~~pv~~V~GN 121 (271)
T PRK11340 48 APFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDM------PLNFSAFSDVLSPLAECAPTFACFGN 121 (271)
T ss_pred CCcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCc------cccHHHHHHHHHHHhhcCCEEEecCC
Confidence 5799999999998632 22 2334445569999999999986321 11235566677777666899999999
Q ss_pred ccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCC--EEEEEEcCCCCCCCChHHHHHHHHHHccccCCCCC
Q 018421 110 HEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRAS--AHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTP 187 (356)
Q Consensus 110 HD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~--~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~~ 187 (356)
||+...... ...+....+...+ ....+....+..++ +.++++|..... ..+ ..+.++ +..
T Consensus 122 HD~~~~~~~--~~~~~~~l~~~gi-----~lL~n~~~~i~~~~~~i~i~G~~d~~~~-~~~-----~~~~~~-----~~~ 183 (271)
T PRK11340 122 HDRPVGTEK--NHLIGETLKSAGI-----TVLFNQATVIATPNRQFELVGTGDLWAG-QCK-----PPPASE-----ANL 183 (271)
T ss_pred CCcccCccc--hHHHHHHHHhcCc-----EEeeCCeEEEeeCCcEEEEEEecchhcc-CCC-----hhHhcC-----CCC
Confidence 998522100 0001111111010 01113334454443 667777642111 101 112222 134
Q ss_pred eEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeeeeecCceecccCC---cccccCCCCCCEE
Q 018421 188 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSG---DCFPVPDKSAPVY 264 (356)
Q Consensus 188 ~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~v~~g---~~~~~~~~~g~~~ 264 (356)
..|++.|.|-.- +.+.+.++|++||||+|.-|...|..+.......+ ....+...+..+|
T Consensus 184 ~~IlL~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQi~lP~~~~~~~~~~~~~~~~G~~~~~~~~l~ 246 (271)
T PRK11340 184 PRLVLAHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQLRVPLVGEPFAPVEDKRYVAGLNAFGERQIY 246 (271)
T ss_pred CeEEEEcCCChh-----------------HhhccCCCCEEEeccccCCeEEccccCccccccccCcccCCcEEeCCcEEE
Confidence 689999999531 22456789999999999988765642211000000 0111223455677
Q ss_pred EEeCCCC
Q 018421 265 ITVGDGG 271 (356)
Q Consensus 265 iv~G~gG 271 (356)
|.+|-|.
T Consensus 247 Vs~G~G~ 253 (271)
T PRK11340 247 TTRGVGS 253 (271)
T ss_pred EeCCccC
Confidence 7777764
No 30
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.56 E-value=5.7e-14 Score=132.24 Aligned_cols=93 Identities=20% Similarity=0.384 Sum_probs=64.8
Q ss_pred CCceEEEE-eCCE--EEEEEcCCCCC-----------CCChHHHHHHHHHHccccCCCCCeEEEEEecccccCCC-Cc--
Q 018421 142 SPLWYAIR-RASA--HIIVLSSYSPF-----------VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNE-AH-- 204 (356)
Q Consensus 142 ~~~~ys~~-~g~~--~fi~lds~~~~-----------~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~-~~-- 204 (356)
+..||+|+ .+++ ++|+|||.... ....+|++||+++|+.+. .+.+++|+++|+|+.+.+. ..
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~-a~~p~VVV~hHpPi~t~gi~~md~ 369 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ-ADGQLMIIAAHIPIAVSPIGSEME 369 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc-CCCceEEEEeCCCcccCCccchhh
Confidence 34599999 5855 99999986411 135899999999999863 2456788888888775221 10
Q ss_pred cc----------ccHHHHHHHHHHHHhc-CccEEEeccccce
Q 018421 205 FM----------EGESMRAAFESWFVRY-KVDVVFAGHVHAY 235 (356)
Q Consensus 205 ~~----------~~~~~~~~l~~l~~~~-~v~lvlsGH~H~y 235 (356)
+. .....-.+|..+++++ +|.++||||.|..
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn 411 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLN 411 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccc
Confidence 00 0011123789999998 7999999999973
No 31
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.43 E-value=3.8e-13 Score=93.75 Aligned_cols=62 Identities=45% Similarity=0.822 Sum_probs=40.7
Q ss_pred CCCEEEEeCCCCCCCCCCCCCCCCCCCccceeeCcccEEEEEEecCceEEEEEEEcCCCCeeeeeeE
Q 018421 260 SAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREASYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSF 326 (356)
Q Consensus 260 ~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~dg~~~~~D~f 326 (356)
++|+|||+|+||+.+ ..+..+.|+|++++...+||++|++.|.++|.++|+++.||++ .|+|
T Consensus 1 kapVhiv~G~aG~~l---~~~~~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v--~D~f 62 (62)
T PF14008_consen 1 KAPVHIVVGAAGNGL---DPFPYPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDGSV--LDEF 62 (62)
T ss_dssp TS-EEEEE--S-T-------B-SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS-T---CEE-
T ss_pred CCCEEEEECcCCCCc---ccccCCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCCcE--ecCC
Confidence 368999999999943 2466778999999999999999999999999999999988987 7987
No 32
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.41 E-value=3.9e-12 Score=101.88 Aligned_cols=116 Identities=25% Similarity=0.303 Sum_probs=81.3
Q ss_pred EEEecCCCCCCcHHHHH---HHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccccccc
Q 018421 40 SLVSDLGQTYNSLSTLE---HYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMT 116 (356)
Q Consensus 40 ~v~gD~g~~~~~~~~l~---~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~ 116 (356)
+++||++.+........ ...+.++++||++||+++..... .+..+...........|+++++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDP------EEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCc------hHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 37899998765443332 33345999999999999864431 22222223333445789999999999
Q ss_pred cCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCCCeEEEEEecc
Q 018421 117 YMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVP 196 (356)
Q Consensus 117 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P 196 (356)
|+++|.|
T Consensus 70 -------------------------------------------------------------------------i~~~H~~ 76 (131)
T cd00838 70 -------------------------------------------------------------------------ILLTHGP 76 (131)
T ss_pred -------------------------------------------------------------------------EEEeccC
Confidence 8999999
Q ss_pred cccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeee
Q 018421 197 IYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 239 (356)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 239 (356)
++.............+..+..++.+.+++++|+||.|.+++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 77 PYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred CCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 8766543221112246788888999999999999999998864
No 33
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.38 E-value=1.2e-10 Score=104.84 Aligned_cols=195 Identities=23% Similarity=0.254 Sum_probs=106.7
Q ss_pred cccCeEEEEEecCCCCCC----------c----------HHHHHHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHH
Q 018421 33 MLLTSLESLVSDLGQTYN----------S----------LSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWG 91 (356)
Q Consensus 33 ~~~~~~f~v~gD~g~~~~----------~----------~~~l~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~ 91 (356)
..++++++.++|+|.+.. . ...+.++++. +||||+++||++++....+ .-..+.
T Consensus 50 ~~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~D-----a~~sl~ 124 (379)
T KOG1432|consen 50 EDGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQD-----AATSLM 124 (379)
T ss_pred CCCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHh-----HHHHHH
Confidence 347899999999885421 1 1234555554 9999999999998743322 114566
Q ss_pred HHHHHhh-cCCCeEEcccCccccccccCCcccccccccccccCCcC----CCC------CCCCceEEEEe-C--------
Q 018421 92 RFVERSA-AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHL----ASK------SSSPLWYAIRR-A-------- 151 (356)
Q Consensus 92 ~~~~~~~-~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~----~~~------~~~~~~ys~~~-g-------- 151 (356)
+.+.|.. .++||.+++||||-...-...+ ...+.. .+|.. .+. ..+-..|...+ +
T Consensus 125 kAvaP~I~~~IPwA~~lGNHDdes~ltr~q---l~~~i~--~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~ 199 (379)
T KOG1432|consen 125 KAVAPAIDRKIPWAAVLGNHDDESDLTRLQ---LMKFIS--KLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELEN 199 (379)
T ss_pred HHhhhHhhcCCCeEEEecccccccccCHHH---HHHHHh--cCCCccccCCCcccceeeeecccceEEEeccCCCccccc
Confidence 7777764 4799999999999853211000 111111 11111 000 00001121111 1
Q ss_pred --CEEEEEEcCCCC---------CC-CChHHHHHHHHHHccc---cCCCCC-eEEEEEeccccc--CCCCc------ccc
Q 018421 152 --SAHIIVLSSYSP---------FV-KYTPQWEWLREELKKV---DREKTP-WLIVLMHVPIYN--SNEAH------FME 207 (356)
Q Consensus 152 --~~~fi~lds~~~---------~~-~~~~Q~~wL~~~L~~~---~~~~~~-~~Iv~~H~P~~~--~~~~~------~~~ 207 (356)
-..+++||+... |+ ....|..||+..-... +..-.| .-+++.|.|+-. .-... ..+
T Consensus 200 ~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E 279 (379)
T KOG1432|consen 200 KSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQE 279 (379)
T ss_pred CceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeec
Confidence 134667776421 11 2356999999887221 112223 568899999732 11110 011
Q ss_pred c---HHHHHHHHHHHH-hcCccEEEeccccceee
Q 018421 208 G---ESMRAAFESWFV-RYKVDVVFAGHVHAYER 237 (356)
Q Consensus 208 ~---~~~~~~l~~l~~-~~~v~lvlsGH~H~y~r 237 (356)
+ ......+...|. +.+|++|++||+|...-
T Consensus 280 ~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDf 313 (379)
T KOG1432|consen 280 GVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDF 313 (379)
T ss_pred cccccccccHHHHHHHhccCcceEEeccccccce
Confidence 1 112335556666 78999999999999543
No 34
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.34 E-value=1e-11 Score=103.44 Aligned_cols=154 Identities=22% Similarity=0.264 Sum_probs=88.7
Q ss_pred eEEEEEecCCCCCCcH-HHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccccc
Q 018421 37 SLESLVSDLGQTYNSL-STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYM 115 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~-~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~ 115 (356)
+||+++||+|...... +.++.+ .+||+|+++||++.. ..+.+.++.+ |++++.||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~------------~~~~~~~~~~----~~~~v~GNHD~~~- 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP------------EEVLELLRDI----PVYVVRGNHDNWA- 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH------------HHHHHHHHHH----EEEEE--CCHSTH-
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH------------HHHHHHHhcC----CEEEEeCCccccc-
Confidence 4899999999864432 233333 479999999999741 3344445444 9999999999631
Q ss_pred ccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCCCeEEEEEec
Q 018421 116 TYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHV 195 (356)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~ 195 (356)
+...... .. +.+.+.. .-....|+++|.
T Consensus 62 -----------~~~~~~~---------~~-----------------------------~~~~~~~---~~~~~~i~~~H~ 89 (156)
T PF12850_consen 62 -----------FPNENDE---------EY-----------------------------LLDALRL---TIDGFKILLSHG 89 (156)
T ss_dssp -----------HHSEECT---------CS-----------------------------SHSEEEE---EETTEEEEEESS
T ss_pred -----------chhhhhc---------cc-----------------------------cccceee---eecCCeEEEECC
Confidence 1000000 00 1111110 112467888888
Q ss_pred ccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeeeeecCceecccCCcccccCCCCCCEEEEeCCCCCCCC
Q 018421 196 PIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEG 275 (356)
Q Consensus 196 P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~v~~g~~~~~~~~~g~~~iv~G~gG~~~~ 275 (356)
+++.... ..+.+...+...+++++++||.|..+... .+++.++..|+-+....
T Consensus 90 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-------------------~~~~~~~~~Gs~~~~~~ 142 (156)
T PF12850_consen 90 HPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQVFK-------------------IGGIHVINPGSIGGPRH 142 (156)
T ss_dssp TSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEEEE-------------------ETTEEEEEE-GSSS-SS
T ss_pred CCccccc--------ChhhhhhhhcccCCCEEEcCCcccceEEE-------------------ECCEEEEECCcCCCCCC
Confidence 7765321 12245577778999999999999977654 14566888877554311
Q ss_pred CCCCCCCCCCCccceeeCcccEEEEEEec
Q 018421 276 LAGKFRYPQPDYSAFREASYGHSTLEIKN 304 (356)
Q Consensus 276 ~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~ 304 (356)
. . ..+|+++++++
T Consensus 143 -----~----------~-~~~~~i~~~~~ 155 (156)
T PF12850_consen 143 -----G----------D-QSGYAILDIED 155 (156)
T ss_dssp -----S----------S-SEEEEEEEETT
T ss_pred -----C----------C-CCEEEEEEEec
Confidence 0 1 35899999854
No 35
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.27 E-value=2.6e-11 Score=98.82 Aligned_cols=117 Identities=16% Similarity=0.115 Sum_probs=73.2
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccccccc
Q 018421 38 LESLVSDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTY 117 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~ 117 (356)
+|+++||+|.... .+...++|+|+++||++.... ..+++.+.+.++.+. ..++++|+||||...
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~~~------~~~~~~~~~~l~~~~-~~~~~~v~GNHD~~~--- 64 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTERGT------LEELQKFLDWLKSLP-HPHKIVIAGNHDLTL--- 64 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCCCC------HHHHHHHHHHHHhCC-CCeEEEEECCCCCcC---
Confidence 4789999997654 223348999999999985422 122233444444331 123578999999730
Q ss_pred CCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCCCeEEEEEeccc
Q 018421 118 MGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPI 197 (356)
Q Consensus 118 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~ 197 (356)
. . . ...|+++|.|+
T Consensus 65 -------------------------~-------------------------------------~--~--~~~ilv~H~~p 78 (135)
T cd07379 65 -------------------------D-------------------------------------P--E--DTDILVTHGPP 78 (135)
T ss_pred -------------------------C-------------------------------------C--C--CCEEEEECCCC
Confidence 0 1 1 24688999998
Q ss_pred ccCCCCcccccHHHHHHHHHHHHhcCccEEEecccccee
Q 018421 198 YNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
+............-.+.+..++++.+++++|+||+|...
T Consensus 79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 79 YGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred CcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 765432111011112456667788899999999999863
No 36
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.22 E-value=1.2e-10 Score=106.15 Aligned_cols=76 Identities=18% Similarity=0.070 Sum_probs=57.7
Q ss_pred cccCeEEEEEecCCCCCCcH---HHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccC
Q 018421 33 MLLTSLESLVSDLGQTYNSL---STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 109 (356)
Q Consensus 33 ~~~~~~f~v~gD~g~~~~~~---~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GN 109 (356)
...+++++.++|.|...... +.+.++....||+|+++||+++... ...+..+.+.++++....+++++.||
T Consensus 41 ~~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~------~~~~~~~~~~L~~L~~~~gv~av~GN 114 (284)
T COG1408 41 SLQGLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDR------PPGVAALALFLAKLKAPLGVFAVLGN 114 (284)
T ss_pred ccCCeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCC------CCCHHHHHHHHHhhhccCCEEEEecc
Confidence 34689999999999876543 3334444558899999999997412 22346678888888888999999999
Q ss_pred ccccc
Q 018421 110 HEIEY 114 (356)
Q Consensus 110 HD~~~ 114 (356)
||+..
T Consensus 115 Hd~~~ 119 (284)
T COG1408 115 HDYGV 119 (284)
T ss_pred ccccc
Confidence 99963
No 37
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.19 E-value=1.3e-10 Score=99.38 Aligned_cols=108 Identities=21% Similarity=0.303 Sum_probs=67.7
Q ss_pred cCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHh---hcCCCeEEcccCccccccccCCcccccccccccccCCcCC
Q 018421 61 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS---AAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLA 137 (356)
Q Consensus 61 ~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~---~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~ 137 (356)
.+||+|+++||+++.....+ ..+|.+..+.+..+ ...+|++.++||||....... ....-.++|
T Consensus 41 l~PD~Vi~lGDL~D~G~~~~---~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~----~~~~~v~RF------ 107 (195)
T cd08166 41 VQPDIVIFLGDLMDEGSIAN---DDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEED----PIESKIRRF------ 107 (195)
T ss_pred cCCCEEEEeccccCCCCCCC---HHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCC----cCHHHHHHH------
Confidence 39999999999998755432 22343332233233 235899999999998531100 000011111
Q ss_pred CCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHH
Q 018421 138 SKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFES 217 (356)
Q Consensus 138 ~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~ 217 (356)
++. | |+++|.|+..... ..+..
T Consensus 108 -------------------------------------~~~----------F-i~lsH~P~~~~~~----------~~~~~ 129 (195)
T cd08166 108 -------------------------------------EKY----------F-IMLSHVPLLAEGG----------QALKH 129 (195)
T ss_pred -------------------------------------HHh----------h-eeeeccccccccc----------HHHHH
Confidence 111 1 9999999976432 15567
Q ss_pred HHHhcCccEEEeccccceeeee
Q 018421 218 WFVRYKVDVVFAGHVHAYERSY 239 (356)
Q Consensus 218 l~~~~~v~lvlsGH~H~y~r~~ 239 (356)
++.++.++++|+||.|.+....
T Consensus 130 ~~~~~~p~~Ifs~H~H~s~~~~ 151 (195)
T cd08166 130 VVTDLDPDLIFSAHRHKSSIFM 151 (195)
T ss_pred HHHhcCceEEEEcCccceeeEE
Confidence 7888999999999999977654
No 38
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.18 E-value=4.7e-10 Score=98.97 Aligned_cols=174 Identities=16% Similarity=0.100 Sum_probs=91.0
Q ss_pred eEEEEEecCCCCCCcHHHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccccccc
Q 018421 37 SLESLVSDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMT 116 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~ 116 (356)
+|++++||+|..... ...+.+.+.+||+|+++||++... ..+.+.+..+ ..|+++++||||.+...
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l~~~~pD~Vl~~GDi~~~~-----------~~~~~~l~~l--~~p~~~V~GNHD~~~~~ 66 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKALHLLQPDLVLFVGDFGNES-----------VQLVRAISSL--PLPKAVILGNHDAWYDA 66 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHHhccCCCEEEECCCCCcCh-----------HHHHHHHHhC--CCCeEEEcCCCcccccc
Confidence 589999999975432 233455556999999999997321 1122223322 47999999999986432
Q ss_pred cCCcccccccccccccCCcCCCCCCCCceE---EEEeCCEEEEEEcCCCC----------------CC--CChHHHHHHH
Q 018421 117 YMGEVVPFKSYLHRYPTPHLASKSSSPLWY---AIRRASAHIIVLSSYSP----------------FV--KYTPQWEWLR 175 (356)
Q Consensus 117 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~y---s~~~g~~~fi~lds~~~----------------~~--~~~~Q~~wL~ 175 (356)
.. . ..+..+.+....- +.... ..++....+.++-+... ++ ...+-.+.+-
T Consensus 67 ~~-~-~k~~~l~~~L~~l-------g~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~iv 137 (238)
T cd07397 67 TF-R-KKGDRVQEQLELL-------GDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRII 137 (238)
T ss_pred cc-c-chHHHHHHHHHHh-------CCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHH
Confidence 10 0 0011111111110 01111 12223323333333210 10 1122233444
Q ss_pred HHHccccCCCCCeEEEEEecccccCCCCc-------------ccccHHHHHHHHHHHHhcCccEEEeccccce
Q 018421 176 EELKKVDREKTPWLIVLMHVPIYNSNEAH-------------FMEGESMRAAFESWFVRYKVDVVFAGHVHAY 235 (356)
Q Consensus 176 ~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~-------------~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y 235 (356)
+.++.. .+..-.|+++|.++...+... .-+..++++++..+-.+-.+.++++||.|.-
T Consensus 138 e~~~~~--~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~ 208 (238)
T cd07397 138 AAAKKA--PPDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPLVVFGHMHHR 208 (238)
T ss_pred HHhhhc--CCCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCEEEeCCccCc
Confidence 444322 233347899999986554210 1134667777766554456899999999974
No 39
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.11 E-value=4.2e-10 Score=100.97 Aligned_cols=177 Identities=15% Similarity=0.105 Sum_probs=90.6
Q ss_pred EEEEEecCCCCCCcHH----HHHHHHH--cCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcC-CCeEEcccCc
Q 018421 38 LESLVSDLGQTYNSLS----TLEHYME--SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY-QPWIWSAGNH 110 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~----~l~~~~~--~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~v~GNH 110 (356)
++++++|+|.+....+ .++.+.. .+||+|+++||+++........ ........+.++.+... +|+++++|||
T Consensus 2 ~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~-~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 2 PTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDP-SPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred cEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcC-CHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 6899999997654322 2233322 4899999999999632111000 11123445556666544 8999999999
Q ss_pred cccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCCCeEE
Q 018421 111 EIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLI 190 (356)
Q Consensus 111 D~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~I 190 (356)
|..... .+.+...+. .. +....+++++.++++.-.... ...+..++++.+.++.. +.+
T Consensus 81 D~~~~~---------~~~~~~g~~-----~l-~~~~~~~~~g~~i~l~HGd~~-~~~d~~y~~~r~~~r~~------~~~ 138 (241)
T PRK05340 81 DFLLGK---------RFAKAAGMT-----LL-PDPSVIDLYGQRVLLLHGDTL-CTDDKAYQRFRRKVRNP------WLQ 138 (241)
T ss_pred chhhhH---------HHHHhCCCE-----Ee-CCcEEEEECCEEEEEECCccc-ccCCHHHHHHHHHHhCH------HHH
Confidence 974211 111111100 00 112346677777776643211 11233444444444431 222
Q ss_pred EEEecccccCCCC---------------cccc-cHHHHHHHHHHHHhcCccEEEeccccceee
Q 018421 191 VLMHVPIYNSNEA---------------HFME-GESMRAAFESWFVRYKVDVVFAGHVHAYER 237 (356)
Q Consensus 191 v~~H~P~~~~~~~---------------~~~~-~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r 237 (356)
.++|.+++..... .... .......+.+++++++++++++||+|.-..
T Consensus 139 ~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~ 201 (241)
T PRK05340 139 WLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAI 201 (241)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcce
Confidence 2233332211000 0000 000124577888899999999999998543
No 40
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=99.08 E-value=8.6e-10 Score=93.44 Aligned_cols=50 Identities=28% Similarity=0.451 Sum_probs=32.9
Q ss_pred cCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhh-------cCCCeEEcccCcccc
Q 018421 61 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-------AYQPWIWSAGNHEIE 113 (356)
Q Consensus 61 ~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~-------~~~P~~~v~GNHD~~ 113 (356)
.+||+|+++||+++...... ...|....+.+..+. ..+|++.++||||..
T Consensus 44 ~~pd~vi~lGDl~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 44 LKPDVVLFLGDLFDGGRIAD---SEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred cCCCEEEEeccccCCcEeCC---HHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 39999999999996532211 234444333333332 158999999999985
No 41
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.08 E-value=4.8e-08 Score=83.32 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=39.7
Q ss_pred EEEEEecCCCCCCc---HHHHHHHHH-cCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccc
Q 018421 38 LESLVSDLGQTYNS---LSTLEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 112 (356)
Q Consensus 38 ~f~v~gD~g~~~~~---~~~l~~~~~-~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 112 (356)
+++++||+|..... .+.+.++.+ .++|.|+++||++.. + ..+.++.+ ..|++.|.||||.
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~~------------~-~~~~l~~~--~~~~~~V~GN~D~ 64 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCSK------------E-TYDYLKTI--APDVHIVRGDFDE 64 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCCH------------H-HHHHHHhh--CCceEEEECCCCc
Confidence 47899999954332 234445554 479999999999741 1 22233332 2379999999997
No 42
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.07 E-value=1.3e-09 Score=90.95 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=39.2
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHc--CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNSLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
|++++||+|... ..++++.+. ++|.|+++||++..... .. +....|++.|+||||..
T Consensus 1 ~i~~isD~H~~~---~~~~~~~~~~~~~d~ii~~GD~~~~~~~---------~~-------~~~~~~~~~V~GNhD~~ 59 (155)
T cd00841 1 KIGVISDTHGSL---ELLEKALELFGDVDLIIHAGDVLYPGPL---------NE-------LELKAPVIAVRGNCDGE 59 (155)
T ss_pred CEEEEecCCCCH---HHHHHHHHHhcCCCEEEECCcccccccc---------ch-------hhcCCcEEEEeCCCCCc
Confidence 578999999764 333333332 39999999999864321 11 23457999999999973
No 43
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=99.04 E-value=9e-10 Score=91.93 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=32.9
Q ss_pred cCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHh-hc--CCCeEEcccCcccc
Q 018421 61 SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS-AA--YQPWIWSAGNHEIE 113 (356)
Q Consensus 61 ~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~-~~--~~P~~~v~GNHD~~ 113 (356)
.+||+|+++||++....... ...|..+...+..+ .. ..|++.++||||..
T Consensus 37 ~~pd~vv~~GDl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 37 LQPDVVFVLGDLFDEGKWST---DEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred cCCCEEEECCCCCCCCccCC---HHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 49999999999996532211 23454433333333 22 47999999999984
No 44
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.03 E-value=1.4e-09 Score=87.77 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=31.7
Q ss_pred EEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeee
Q 018421 189 LIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 238 (356)
Q Consensus 189 ~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 238 (356)
.|+++|+|++....... ....-.+.+.+++.+++++++|+||+|.....
T Consensus 58 ~Ilv~H~pp~~~~~~~~-~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 58 DILLTHAPPAGIGDGED-FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred CEEEECCCCCcCcCccc-ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 47888888764322110 00112456777888889999999999985443
No 45
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=99.02 E-value=9.5e-09 Score=91.56 Aligned_cols=73 Identities=21% Similarity=0.127 Sum_probs=46.2
Q ss_pred EEEecCCCCCCc----HHHHHHHHHc--CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-CCCeEEcccCccc
Q 018421 40 SLVSDLGQTYNS----LSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEI 112 (356)
Q Consensus 40 ~v~gD~g~~~~~----~~~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~ 112 (356)
++++|+|.+... ...++.+.+. +||+|+++||+++..-..... ....+.+.+.++.+.. .+|+++++||||.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~-~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~ 80 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDP-STLARSVAQAIRQVSDQGVPCYFMHGNRDF 80 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCC-CHHHHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 589999977532 2344445442 799999999999631110000 1112344555666654 4899999999997
Q ss_pred c
Q 018421 113 E 113 (356)
Q Consensus 113 ~ 113 (356)
.
T Consensus 81 ~ 81 (231)
T TIGR01854 81 L 81 (231)
T ss_pred h
Confidence 4
No 46
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.01 E-value=5.3e-09 Score=85.93 Aligned_cols=158 Identities=19% Similarity=0.195 Sum_probs=84.2
Q ss_pred HHHHHHHHHc--CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccccccccCCcccccccccc
Q 018421 52 LSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLH 129 (356)
Q Consensus 52 ~~~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~ 129 (356)
+++-++.... .-|.|++.||+..+-...+.. .=++++..+ .-.-+.+.||||+++.. .. ...+
T Consensus 31 ekI~k~W~~~v~~eDiVllpGDiSWaM~l~ea~------~Dl~~i~~L--PG~K~m~rGNHDYWw~s-~s------kl~n 95 (230)
T COG1768 31 EKIKKHWRSKVSPEDIVLLPGDISWAMRLEEAE------EDLRFIGDL--PGTKYMIRGNHDYWWSS-IS------KLNN 95 (230)
T ss_pred HHHHHHHHhcCChhhEEEecccchhheechhhh------hhhhhhhcC--CCcEEEEecCCccccch-HH------HHHh
Confidence 4444444443 458999999999765443221 112233322 12357799999997531 11 0000
Q ss_pred cccCCcCCCCCCCCceEEEEeCCEEEEEE---cCC-CCCCCChHH--------HHHHHHHHccccCCCCCeEEEEEeccc
Q 018421 130 RYPTPHLASKSSSPLWYAIRRASAHIIVL---SSY-SPFVKYTPQ--------WEWLREELKKVDREKTPWLIVLMHVPI 197 (356)
Q Consensus 130 ~~~~P~~~~~~~~~~~ys~~~g~~~fi~l---ds~-~~~~~~~~Q--------~~wL~~~L~~~~~~~~~~~Iv~~H~P~ 197 (356)
.+|... ..-+. .|.+++..+++. ||. ..+....+| ...|+..+.++-++.....|||+|+|+
T Consensus 96 --~lp~~l--~~~n~--~f~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP 169 (230)
T COG1768 96 --ALPPIL--FYLNN--GFELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPP 169 (230)
T ss_pred --hcCchH--hhhcc--ceeEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCC
Confidence 011000 00000 244445444433 222 223333443 333444222222345567899999999
Q ss_pred ccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeee
Q 018421 198 YNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 238 (356)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 238 (356)
++..... ..+..++++++|+.++.||.|--.|-
T Consensus 170 ~s~~~t~--------~~~sevlee~rv~~~lyGHlHgv~~p 202 (230)
T COG1768 170 FSDDGTP--------GPFSEVLEEGRVSKCLYGHLHGVPRP 202 (230)
T ss_pred CCCCCCC--------cchHHHHhhcceeeEEeeeccCCCCC
Confidence 9865432 14567788999999999999997763
No 47
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.97 E-value=8.6e-09 Score=88.36 Aligned_cols=178 Identities=20% Similarity=0.261 Sum_probs=83.8
Q ss_pred eEEEEEecCCCCCCcHH-HHHHHHHcCCcEEEEcCccccCCCCCccccchhHH-----------------------HHHH
Q 018421 37 SLESLVSDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWD-----------------------SWGR 92 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~~-~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~-----------------------~~~~ 92 (356)
=+++.++|.....+-.+ .+..+...+||+|+++||++-.... ...|. .+.+
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~-----~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ 80 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEAR-----SDEYERAQEEQREPDKSEINEEECYDSEALDK 80 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHH-----HHHHHHHHHTT----THHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchh-----hhHHHHHhhhccCcchhhhhhhhhhhHHHHHH
Confidence 46788999876544333 3333344599999999999854211 22333 1223
Q ss_pred HHHHhhc-CCCeEEcccCccccccccCCcccccc-cccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCCC---C-
Q 018421 93 FVERSAA-YQPWIWSAGNHEIEYMTYMGEVVPFK-SYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPFV---K- 166 (356)
Q Consensus 93 ~~~~~~~-~~P~~~v~GNHD~~~~~~~~~~~~~~-~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~~---~- 166 (356)
++..+.. .+|++++|||||-... ..++ .+....-.|.. ... ...+.+.-|...++++-....-. .
T Consensus 81 ff~~L~~~~~p~~~vPG~~Dap~~------~~lr~a~~~e~v~p~~--~~v-H~sf~~~~g~y~v~G~GGeI~~~~~~~~ 151 (255)
T PF14582_consen 81 FFRILGELGVPVFVVPGNMDAPER------FFLREAYNAEIVTPHI--HNV-HESFFFWKGEYLVAGMGGEITDDQREEE 151 (255)
T ss_dssp HHHHHHCC-SEEEEE--TTS-SHH------HHHHHHHHCCCC-TTE--EE--CTCEEEETTTEEEEEE-SEEESSS-BCS
T ss_pred HHHHHHhcCCcEEEecCCCCchHH------HHHHHHhccceeccce--eee-eeeecccCCcEEEEecCccccCCCcccc
Confidence 4444433 5899999999997310 0000 11100001100 000 11233333457777765431100 0
Q ss_pred -----ChHHHHHHHHHHccccCCCCCeEEEEEeccc-ccCCCCcccccHHHHHHHHHHHHhcCccEEEecccccee
Q 018421 167 -----YTPQWEWLREELKKVDREKTPWLIVLMHVPI-YNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 167 -----~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
.....+|..+.|..+ +..-.|+++|.|| +..+..+. + .+.+.+++++++.++++|||.|--.
T Consensus 152 ~~LrYP~weaey~lk~l~el---k~~r~IlLfhtpPd~~kg~~h~-G----S~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 152 FKLRYPAWEAEYSLKFLREL---KDYRKILLFHTPPDLHKGLIHV-G----SAAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp SS-EEEHHHHHHHHGGGGGC---TSSEEEEEESS-BTBCTCTBTT-S----BHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred ccccchHHHHHHHHHHHHhc---ccccEEEEEecCCccCCCcccc-c----HHHHHHHHHhcCCcEEEecccccch
Confidence 112345555666664 2335788899999 44332221 1 2477889999999999999999844
No 48
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.97 E-value=3.7e-08 Score=84.69 Aligned_cols=175 Identities=19% Similarity=0.179 Sum_probs=104.1
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHH-cCCcEEEEcCccccCCCCCccccchhHHHHHHH--HHHhh-cCCCeEEcccCcc
Q 018421 36 TSLESLVSDLGQTYNSLSTLEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRF--VERSA-AYQPWIWSAGNHE 111 (356)
Q Consensus 36 ~~~f~v~gD~g~~~~~~~~l~~~~~-~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~--~~~~~-~~~P~~~v~GNHD 111 (356)
.+++++++|.|......+.+..+.+ .++|+++++||++|..-.+. ....+. ++.+. ..+|++++|||-|
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~-------~~~~~~~~~e~l~~~~~~v~avpGNcD 75 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPK-------EVAEELNKLEALKELGIPVLAVPGNCD 75 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCch-------HHHHhhhHHHHHHhcCCeEEEEcCCCC
Confidence 5789999999988765555544444 49999999999994322211 111111 45554 4689999999988
Q ss_pred ccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCC--CCC----CCh-HHHHHHHHHHccccCC
Q 018421 112 IEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS--PFV----KYT-PQWEWLREELKKVDRE 184 (356)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~--~~~----~~~-~Q~~wL~~~L~~~~~~ 184 (356)
-..-. . ........ ..+ -+..++++.|+++--.. ++. ... +-+.-|++-+...+
T Consensus 76 ~~~v~--------~-~l~~~~~~------v~~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~-- 136 (226)
T COG2129 76 PPEVI--------D-VLKNAGVN------VHG--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKAD-- 136 (226)
T ss_pred hHHHH--------H-HHHhcccc------ccc--ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhccc--
Confidence 63110 0 00101111 011 36778888888754321 121 112 22344555555432
Q ss_pred CCCeEEEEEecccccCCCCccccc--HHHHHHHHHHHHhcCccEEEeccccceeee
Q 018421 185 KTPWLIVLMHVPIYNSNEAHFMEG--ESMRAAFESWFVRYKVDVVFAGHVHAYERS 238 (356)
Q Consensus 185 ~~~~~Iv~~H~P~~~~~~~~~~~~--~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 238 (356)
..-.|+.+|.|||...... ..+ .--.+.+..++++.++.+.+|||.|-..-.
T Consensus 137 -~~~~Il~~HaPP~gt~~d~-~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~ 190 (226)
T COG2129 137 -NPVNILLTHAPPYGTLLDT-PSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGI 190 (226)
T ss_pred -CcceEEEecCCCCCccccC-CCCccccchHHHHHHHHHhCCceEEEeeecccccc
Confidence 1123999999999765431 122 122467788889999999999999985443
No 49
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.95 E-value=1.2e-07 Score=90.52 Aligned_cols=43 Identities=26% Similarity=0.238 Sum_probs=30.7
Q ss_pred cCeEEEEEecCCCCCC---------cHHHHHHH----HHcCCcEEEEcCccccCCC
Q 018421 35 LTSLESLVSDLGQTYN---------SLSTLEHY----MESGAQTVLFLGDLSYADR 77 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~---------~~~~l~~~----~~~~~d~vl~~GD~vy~~~ 77 (356)
+.+||++++|+|.+.. ...+++++ .+.++|+||++||+.+...
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~ 57 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENK 57 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCC
Confidence 4689999999997631 12234443 3459999999999986544
No 50
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.92 E-value=3.4e-09 Score=90.45 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=24.7
Q ss_pred EEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeee
Q 018421 190 IVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 239 (356)
Q Consensus 190 Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 239 (356)
|++.|.|.+- +..+.+++++||||+|.-++..
T Consensus 129 ilL~H~P~~~------------------~~~~~~~dl~lSGHtHgGqi~~ 160 (193)
T cd08164 129 ILLTHVPLYK------------------IFLEGKPGLILTGHDHEGCDYQ 160 (193)
T ss_pred EEEEccccee------------------ccccCCCCEEEeCccCCCeEEE
Confidence 8999999753 1224578999999999977754
No 51
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.92 E-value=1.2e-08 Score=92.12 Aligned_cols=175 Identities=15% Similarity=0.097 Sum_probs=88.7
Q ss_pred eEEEEEecCCCCC------CcH----HHHHHHHHcCCc-EEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEE
Q 018421 37 SLESLVSDLGQTY------NSL----STLEHYMESGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIW 105 (356)
Q Consensus 37 ~~f~v~gD~g~~~------~~~----~~l~~~~~~~~d-~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 105 (356)
++|+.++|+|... ... ..++++.+..|| +++.+||++....... +......++.+...-.-+.
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~------~~~~~~~~~~l~~~g~d~~ 74 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST------ATKGEANIELMNALGYDAV 74 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh------ccCCcHHHHHHHhcCCCEE
Confidence 4789999999653 222 344555555787 7899999996544321 1111222333333335567
Q ss_pred cccCccccccccCCcccccccccccccCCcC-------C---CCCCCCceEEEEeCCEE--EEEEcCCCCCC--------
Q 018421 106 SAGNHEIEYMTYMGEVVPFKSYLHRYPTPHL-------A---SKSSSPLWYAIRRASAH--IIVLSSYSPFV-------- 165 (356)
Q Consensus 106 v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~-------~---~~~~~~~~ys~~~g~~~--fi~lds~~~~~-------- 165 (356)
++||||+..... .+.........|.. . .......|-.++.++++ |+++.+.....
T Consensus 75 ~~GNHe~d~g~~-----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~~ 149 (252)
T cd00845 75 TIGNHEFDYGLD-----ALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWII 149 (252)
T ss_pred eeccccccccHH-----HHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCccc
Confidence 889999853211 11111111111100 0 00011234456778755 55554421100
Q ss_pred --CChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceee
Q 018421 166 --KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 237 (356)
Q Consensus 166 --~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r 237 (356)
......+.+++..+. .+.+.+.+|++.|-|... . ..+...+ .++|++|+||.|..+.
T Consensus 150 ~~~~~~~~~~~~~~~~~-~~~~~D~vIvl~H~g~~~--------~----~~la~~~--~giDlvlggH~H~~~~ 208 (252)
T cd00845 150 GLPFEDLAEAVAVAEEL-LAEGADVIILLSHLGLDD--------D----EELAEEV--PGIDVILGGHTHHLLE 208 (252)
T ss_pred CceecCHHHHHHHHHHH-HhCCCCEEEEEeccCccc--------h----HHHHhcC--CCccEEEcCCcCcccC
Confidence 001122333322222 125678999999988642 0 1122111 5899999999998654
No 52
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.91 E-value=2.3e-08 Score=83.63 Aligned_cols=61 Identities=18% Similarity=0.063 Sum_probs=41.3
Q ss_pred eEEEEEecCCCCCCcHHHH-HHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccc
Q 018421 37 SLESLVSDLGQTYNSLSTL-EHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 112 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~~~l-~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 112 (356)
.|++++||+|......+.+ +.+... ++|.|+++||++. ....+.+..+ ..|++.|.||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~-------------~~~~~~l~~~--~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTS-------------PFVLKEFEDL--AAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCC-------------HHHHHHHHHh--CCceEEEccCCCc
Confidence 3789999999765443333 334444 8999999999971 1122333322 3589999999996
No 53
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.90 E-value=2.1e-08 Score=97.14 Aligned_cols=177 Identities=18% Similarity=0.217 Sum_probs=99.0
Q ss_pred HHHHHHHc--CCcEEEEcCccccCCCCCccccchhHHH---HHHHHHHhhcCCCeEEcccCccccccccCC----cccc-
Q 018421 54 TLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDS---WGRFVERSAAYQPWIWSAGNHEIEYMTYMG----EVVP- 123 (356)
Q Consensus 54 ~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~~~~~---~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~----~~~~- 123 (356)
+++++.++ ++|+|+++||++..+...... +...+. ..+.+.......|++++.||||.-..+... ...-
T Consensus 200 ~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~-~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~ 278 (577)
T KOG3770|consen 200 ALDHIKENHKDIDYIIWTGDNVAHDVWAQTE-EENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHS 278 (577)
T ss_pred HHHHHHhcCCCCCEEEEeCCCCcccchhhhH-HHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchhh
Confidence 34555555 599999999999654332111 111121 222334445679999999999984211110 0000
Q ss_pred ----cccccccc--cCCcC-CCCCCCCceEEE-EeCCEEEEEEcCCCCC----------CCChHHHHHHHHHHccccCCC
Q 018421 124 ----FKSYLHRY--PTPHL-ASKSSSPLWYAI-RRASAHIIVLSSYSPF----------VKYTPQWEWLREELKKVDREK 185 (356)
Q Consensus 124 ----~~~~~~~~--~~P~~-~~~~~~~~~ys~-~~g~~~fi~lds~~~~----------~~~~~Q~~wL~~~L~~~~~~~ 185 (356)
|..+...| .+|.. ......+.+|.. ..++.++|.||+..-+ .....|++|+..+|..+. ++
T Consensus 279 ~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae-~~ 357 (577)
T KOG3770|consen 279 QLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAE-SA 357 (577)
T ss_pred hhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHH-hc
Confidence 01111111 12322 112234566764 4589999999995321 234678999999999874 44
Q ss_pred CCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhc--CccEEEeccccceee
Q 018421 186 TPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY--KVDVVFAGHVHAYER 237 (356)
Q Consensus 186 ~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~--~v~lvlsGH~H~y~r 237 (356)
...+=+++|.|+-... + ...-...+-.++.++ -+...|.||.|.-+-
T Consensus 358 GekVhil~HIPpG~~~---c--~~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f 406 (577)
T KOG3770|consen 358 GEKVHILGHIPPGDGV---C--LEGWSINFYRIVNRFRSTIAGQFYGHTHIDEF 406 (577)
T ss_pred CCEEEEEEeeCCCCcc---h--hhhhhHHHHHHHHHHHHhhhhhccccCcceeE
Confidence 5567789999985311 1 111122334444444 234569999998553
No 54
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.79 E-value=1.1e-07 Score=86.00 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=86.5
Q ss_pred eEEEEEecCCCCC-------Cc----HHHHHHHHHcCCc-EEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeE
Q 018421 37 SLESLVSDLGQTY-------NS----LSTLEHYMESGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWI 104 (356)
Q Consensus 37 ~~f~v~gD~g~~~-------~~----~~~l~~~~~~~~d-~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 104 (356)
++++.+.|++.-. .. ...++++.+.+|+ ++|.+||++........ .+.+...+.++.+ ..-+
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~---~~g~~~~~~l~~l---~~d~ 74 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTA---TKGKQMVPVLNAL---GVDL 74 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhh---cCCccHHHHHHhc---CCcE
Confidence 3567777776211 01 2234444455777 89999999965432111 1112233333332 2346
Q ss_pred EcccCccccccccCCcccccccccccccCCcC----------CCCCCCCceEEEEeCCEE--EEEEcCCCCC------C-
Q 018421 105 WSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHL----------ASKSSSPLWYAIRRASAH--IIVLSSYSPF------V- 165 (356)
Q Consensus 105 ~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~----------~~~~~~~~~ys~~~g~~~--fi~lds~~~~------~- 165 (356)
.++||||+..... .+....+....|.- .....-+.|.-++.++++ |+++.+.... .
T Consensus 75 ~~~GNHefd~g~~-----~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~~ 149 (257)
T cd07406 75 ACFGNHEFDFGED-----QLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDPE 149 (257)
T ss_pred EeecccccccCHH-----HHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCCC
Confidence 6899999853211 11111111111100 000012356677888865 5555443211 0
Q ss_pred --CChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEecccccee
Q 018421 166 --KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 236 (356)
Q Consensus 166 --~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 236 (356)
....-.+.+++.+++..+.+.+.+|++.|-+... .. .+.++ .++|++|+||.|..+
T Consensus 150 ~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~--------d~-------~la~~~~~iD~IlgGH~H~~~ 208 (257)
T cd07406 150 YVRYRDYVETARELVDELREQGADLIIALTHMRLPN--------DK-------RLAREVPEIDLILGGHDHEYI 208 (257)
T ss_pred cceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchh--------hH-------HHHHhCCCCceEEecccceeE
Confidence 0112233344433222225678999999997531 11 22223 489999999999866
No 55
>PRK09453 phosphodiesterase; Provisional
Probab=98.77 E-value=1.7e-07 Score=80.34 Aligned_cols=74 Identities=23% Similarity=0.218 Sum_probs=43.9
Q ss_pred eEEEEEecCCCCCCcH-HHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-CCCeEEcccCcccc
Q 018421 37 SLESLVSDLGQTYNSL-STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 113 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~-~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 113 (356)
.|++++||+|...... +.++.+.+.++|.|+++||++........ ...++ ..+.++.+.. ..|++.|.||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~--~~~~~-~~~~~~~l~~~~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPL--PEGYA-PKKVAELLNAYADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCC--ccccC-HHHHHHHHHhcCCceEEEccCCcch
Confidence 3789999999653322 23334445699999999999853221000 00000 1223333322 35899999999973
No 56
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.76 E-value=4.2e-08 Score=86.36 Aligned_cols=74 Identities=16% Similarity=0.051 Sum_probs=44.0
Q ss_pred EEEecCCCCCCc---HHHHHHHHH----cCCcEEEEcCccccCCCCCccccchhHHH-HHHHHHHhhcCCCeEEcccCcc
Q 018421 40 SLVSDLGQTYNS---LSTLEHYME----SGAQTVLFLGDLSYADRYQFIDVGVRWDS-WGRFVERSAAYQPWIWSAGNHE 111 (356)
Q Consensus 40 ~v~gD~g~~~~~---~~~l~~~~~----~~~d~vl~~GD~vy~~~~~~~~~~~~~~~-~~~~~~~~~~~~P~~~v~GNHD 111 (356)
++++|+|.+... ......+.+ .+++.++++||+++............... +..+++......+++.++||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 378999976542 222333333 38999999999995422111110111111 2344455556789999999999
Q ss_pred cc
Q 018421 112 IE 113 (356)
Q Consensus 112 ~~ 113 (356)
..
T Consensus 81 ~~ 82 (217)
T cd07398 81 FL 82 (217)
T ss_pred HH
Confidence 85
No 57
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.76 E-value=2.5e-07 Score=84.79 Aligned_cols=185 Identities=15% Similarity=0.080 Sum_probs=88.4
Q ss_pred eEEEEEecCCCCCC-------------c----HHHHHHHHHcCCcEEEE-cCccccCCCCCccc---cchhHHHHHHHHH
Q 018421 37 SLESLVSDLGQTYN-------------S----LSTLEHYMESGAQTVLF-LGDLSYADRYQFID---VGVRWDSWGRFVE 95 (356)
Q Consensus 37 ~~f~v~gD~g~~~~-------------~----~~~l~~~~~~~~d~vl~-~GD~vy~~~~~~~~---~~~~~~~~~~~~~ 95 (356)
++|+.++|+|..-. . ...++++.+.+|+.+++ +||++.+....... .........+.++
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln 80 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMN 80 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHH
Confidence 46788888875421 1 12334444457887665 99999654321100 0000112223333
Q ss_pred HhhcCCCeEEcccCccccccccCCcccccccccccccCCcCC--------CCCCCCceEEEEeC-CEEEEEEc--CCCC-
Q 018421 96 RSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLA--------SKSSSPLWYAIRRA-SAHIIVLS--SYSP- 163 (356)
Q Consensus 96 ~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~--------~~~~~~~~ys~~~g-~~~fi~ld--s~~~- 163 (356)
.+ -+-+.++||||+.+... .+....+....|... ....-..|.-++.+ ++++-++- +...
T Consensus 81 ~~---g~d~~~lGNHe~d~g~~-----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~~~~ 152 (277)
T cd07410 81 AL---GYDAGTLGNHEFNYGLD-----YLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTPQIP 152 (277)
T ss_pred hc---CCCEEeecccCcccCHH-----HHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCcccc
Confidence 32 23467889999864211 111111111111100 00111345567788 86655544 3210
Q ss_pred -C-----------CCChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEec
Q 018421 164 -F-----------VKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAG 230 (356)
Q Consensus 164 -~-----------~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsG 230 (356)
+ ....+..++..++|++ .+.+.+|+++|-+....... ...... ....+.++ .++|++|+|
T Consensus 153 ~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~-~~~~~~---~~~~la~~~~~vD~IlgG 225 (277)
T cd07410 153 NWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEE-SLTGEN---AAYELAEEVPGIDAILTG 225 (277)
T ss_pred cccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCccc-ccCCcc---HHHHHHhcCCCCcEEEeC
Confidence 0 0111223444444443 46789999999987543210 001111 12233334 589999999
Q ss_pred ccccee
Q 018421 231 HVHAYE 236 (356)
Q Consensus 231 H~H~y~ 236 (356)
|.|...
T Consensus 226 HsH~~~ 231 (277)
T cd07410 226 HQHRRF 231 (277)
T ss_pred CCcccc
Confidence 999753
No 58
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=98.70 E-value=2e-07 Score=82.78 Aligned_cols=141 Identities=21% Similarity=0.231 Sum_probs=81.4
Q ss_pred HcCCcEEEEcCccccCCCCCc-----------------cccchhHHHHHHH-----HHHhhcCCCeEEcccCcccccccc
Q 018421 60 ESGAQTVLFLGDLSYADRYQF-----------------IDVGVRWDSWGRF-----VERSAAYQPWIWSAGNHEIEYMTY 117 (356)
Q Consensus 60 ~~~~d~vl~~GD~vy~~~~~~-----------------~~~~~~~~~~~~~-----~~~~~~~~P~~~v~GNHD~~~~~~ 117 (356)
+.+||++|++||.+|.+.... .........+... +..+.+.+|++.++.+||+..+..
T Consensus 27 ~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~p~~~~~~~~~p~~~iwDDHDi~~n~~ 106 (228)
T cd07389 27 EEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSDPDLQRLLAQVPTIGIWDDHDIGDNWG 106 (228)
T ss_pred ccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCCHHHHHHhhcCCEEEeccccccccccc
Confidence 569999999999999986321 1101111112211 334556789999999999953221
Q ss_pred CCc-------c------cccccccccccCCcCCCC--CCCCceEEEEeCCE-EEEEEcCCCCCCCChHHHHHHHHHHccc
Q 018421 118 MGE-------V------VPFKSYLHRYPTPHLASK--SSSPLWYAIRRASA-HIIVLSSYSPFVKYTPQWEWLREELKKV 181 (356)
Q Consensus 118 ~~~-------~------~~~~~~~~~~~~P~~~~~--~~~~~~ys~~~g~~-~fi~lds~~~~~~~~~Q~~wL~~~L~~~ 181 (356)
... . .....|......+..... .....|+++.+|.. .|++||+...-
T Consensus 107 ~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~~~lD~R~~R----------------- 169 (228)
T cd07389 107 GDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDLILLDTRTYR----------------- 169 (228)
T ss_pred cccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceEEEEeccccc-----------------
Confidence 100 0 001123332333222211 24567899999996 99999996542
Q ss_pred cCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhc--CccEEEeccccceeee
Q 018421 182 DREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY--KVDVVFAGHVHAYERS 238 (356)
Q Consensus 182 ~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~--~v~lvlsGH~H~y~r~ 238 (356)
..+.....-|+++..++.+. +--++|||+.|.-...
T Consensus 170 ---------------------d~W~~~~~er~~l~~~~~~~~~~~vv~lSGDvH~~~~~ 207 (228)
T cd07389 170 ---------------------DSWDGYPAERERLLDLLAKRKIKNVVFLSGDVHLAEAS 207 (228)
T ss_pred ---------------------ccccccHHHHHHHHHHHHHhCCCCeEEEecHHHHHHHh
Confidence 12233344566677765444 3348899999985543
No 59
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.64 E-value=3.3e-07 Score=88.20 Aligned_cols=73 Identities=23% Similarity=0.086 Sum_probs=50.0
Q ss_pred eEEEEEecCCCC-C--Cc-------HH----HHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-CC
Q 018421 37 SLESLVSDLGQT-Y--NS-------LS----TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQ 101 (356)
Q Consensus 37 ~~f~v~gD~g~~-~--~~-------~~----~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 101 (356)
+||++++|||.+ . .. .+ .++.+.+.++||||++||+.+....+. ..-..+.+.+..+.. .+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~----~a~~~~~~~l~~l~~~~I 76 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSP----RALKLFLEALRRLKDAGI 76 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCH----HHHHHHHHHHHHhccCCC
Confidence 489999999988 2 11 12 233444569999999999987643322 111345566666654 69
Q ss_pred CeEEcccCcccc
Q 018421 102 PWIWSAGNHEIE 113 (356)
Q Consensus 102 P~~~v~GNHD~~ 113 (356)
|+++++||||..
T Consensus 77 pv~~I~GNHD~~ 88 (390)
T COG0420 77 PVVVIAGNHDSP 88 (390)
T ss_pred cEEEecCCCCch
Confidence 999999999985
No 60
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.64 E-value=1.2e-06 Score=79.18 Aligned_cols=185 Identities=17% Similarity=0.135 Sum_probs=97.5
Q ss_pred EEEEecCCCCCCcH-HHHHHHHH---cCCcEEEEcCccccCCCCCccc---c---chhHHHHHHHHHHhh-cCCCeEEcc
Q 018421 39 ESLVSDLGQTYNSL-STLEHYME---SGAQTVLFLGDLSYADRYQFID---V---GVRWDSWGRFVERSA-AYQPWIWSA 107 (356)
Q Consensus 39 f~v~gD~g~~~~~~-~~l~~~~~---~~~d~vl~~GD~vy~~~~~~~~---~---~~~~~~~~~~~~~~~-~~~P~~~v~ 107 (356)
|+|.||.|..-... +.++.+.+ .++|++|++||+.........+ . ...+..|.+.++... ..+|+++|.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 57999999853322 22444433 2799999999996332211100 0 012333444444433 346789999
Q ss_pred cCccccccccCCcccccccccccccCCcCCCCCCCCce-----EEEEeCCEEEEEEcCCCC---CC-------C-ChHHH
Q 018421 108 GNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLW-----YAIRRASAHIIVLSSYSP---FV-------K-YTPQW 171 (356)
Q Consensus 108 GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~-----ys~~~g~~~fi~lds~~~---~~-------~-~~~Q~ 171 (356)
||||... ...+ .+...+-.| +.+ -.+.+++++|..|..... +. . ...++
T Consensus 81 GNHE~~~--~l~~-----l~~gg~v~~--------Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~ 145 (262)
T cd00844 81 GNHEASN--YLWE-----LPYGGWVAP--------NIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTK 145 (262)
T ss_pred CCCCCHH--HHHh-----hcCCCeecC--------cEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHH
Confidence 9999621 0000 000001011 111 245678999999876221 11 1 11222
Q ss_pred HHH-------HHHHccccCCCCCeEEEEEecccccCCCCcccc---------------cHHHHHHHHHHHHhcCccEEEe
Q 018421 172 EWL-------REELKKVDREKTPWLIVLMHVPIYNSNEAHFME---------------GESMRAAFESWFVRYKVDVVFA 229 (356)
Q Consensus 172 ~wL-------~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~---------------~~~~~~~l~~l~~~~~v~lvls 229 (356)
..+ -+.|... +.+.=|+++|.||.......... ...-...+..++++.++...|+
T Consensus 146 rs~y~~r~~~~~kl~~~---~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~ 222 (262)
T cd00844 146 RSAYHVRNIEVFKLKQL---KQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFS 222 (262)
T ss_pred HHhhhhhHHHHHHHHhc---CCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEE
Confidence 211 0112221 12345999999997654321100 0011346778889999999999
Q ss_pred ccccc-eeeeeee
Q 018421 230 GHVHA-YERSYRI 241 (356)
Q Consensus 230 GH~H~-y~r~~~~ 241 (356)
||.|. |++..|-
T Consensus 223 gH~H~~f~~~~~~ 235 (262)
T cd00844 223 AHLHVKFAALVPH 235 (262)
T ss_pred ecCCcccceecCC
Confidence 99998 6666543
No 61
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.60 E-value=8.5e-07 Score=81.66 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=35.5
Q ss_pred HHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHh--cCccEEEeccccceee
Q 018421 172 EWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR--YKVDVVFAGHVHAYER 237 (356)
Q Consensus 172 ~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~--~~v~lvlsGH~H~y~r 237 (356)
+-+++.+++.+..+.+.+|++.|-.......... ..........++.+ .++|++|+||+|....
T Consensus 178 e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~--~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~ 243 (288)
T cd07412 178 EAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDT--CSAASGPIADIVNRLDPDVDVVFAGHTHQAYN 243 (288)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCcc--ccccChhHHHHHhhcCCCCCEEEeCccCcccc
Confidence 3444444443224678999999987653221100 00011122333443 4799999999998653
No 62
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.57 E-value=5.6e-07 Score=81.84 Aligned_cols=155 Identities=18% Similarity=0.153 Sum_probs=75.3
Q ss_pred HHHHHHHc-CCcEE-EEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccccccccCCcccccccccccc
Q 018421 54 TLEHYMES-GAQTV-LFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRY 131 (356)
Q Consensus 54 ~l~~~~~~-~~d~v-l~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~ 131 (356)
.++++.+. .+|.+ +.+||++....... +......++.+.. +++.++.||||+..... .+....+.+
T Consensus 41 ~v~~~~~~~~~~~l~l~~GD~~~gs~~~~------~~~g~~~~~~l~~-~g~da~~GNHefd~g~~-----~l~~~~~~~ 108 (264)
T cd07411 41 LIKRIRAERNPNTLLLDGGDTWQGSGEAL------YTRGQAMVDALNA-LGVDAMVGHWEFTYGPE-----RVRELFGRL 108 (264)
T ss_pred HHHHHHHhcCCCeEEEeCCCccCCChHHh------hcCChhHHHHHHh-hCCeEEecccccccCHH-----HHHHHHhhC
Confidence 34445555 78876 67999996543211 1111222333322 45555559999864211 111111111
Q ss_pred cCCcCCC--------CCCCCceEEEEeCCEE--EEEEcCCCCCC----------CChHHHHHHHHHHcccc-CCCCCeEE
Q 018421 132 PTPHLAS--------KSSSPLWYAIRRASAH--IIVLSSYSPFV----------KYTPQWEWLREELKKVD-REKTPWLI 190 (356)
Q Consensus 132 ~~P~~~~--------~~~~~~~ys~~~g~~~--fi~lds~~~~~----------~~~~Q~~wL~~~L~~~~-~~~~~~~I 190 (356)
..|.-.+ ...-..|.-++.++++ ||++.+..... ......+.+++.+.+.. ..+.+.+|
T Consensus 109 ~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI 188 (264)
T cd07411 109 NWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVV 188 (264)
T ss_pred CCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEE
Confidence 1111100 0011234556778754 56665431100 01223344444433221 24678999
Q ss_pred EEEecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEeccccce
Q 018421 191 VLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAY 235 (356)
Q Consensus 191 v~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y 235 (356)
++.|-+... .. .+.++ .++|++|+||.|..
T Consensus 189 ~l~H~g~~~--------~~-------~la~~~~~iDlilgGH~H~~ 219 (264)
T cd07411 189 LLSHNGLPV--------DV-------ELAERVPGIDVILSGHTHER 219 (264)
T ss_pred EEecCCchh--------hH-------HHHhcCCCCcEEEeCccccc
Confidence 999997531 11 12222 57999999999974
No 63
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.55 E-value=1e-06 Score=79.79 Aligned_cols=182 Identities=13% Similarity=0.112 Sum_probs=86.2
Q ss_pred eEEEEEecCCCCCC-------cHHHH----HHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEE
Q 018421 37 SLESLVSDLGQTYN-------SLSTL----EHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIW 105 (356)
Q Consensus 37 ~~f~v~gD~g~~~~-------~~~~l----~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 105 (356)
++++.++|+|..-. ....+ +++.+.++++++.+||++.+..... ..... ..++.+.....-+.
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~---~~~g~---~~~~~ln~~g~d~~ 74 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISD---LDKGE---TIIKIMNAVGYDAV 74 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhh---hcCCc---HHHHHHHhcCCcEE
Confidence 47889999986421 12223 3333335789999999986532211 01112 22333323222345
Q ss_pred cccCccccccccCCcccccccccccccCCcCCC-------CC-CCCceEEEEeC-CE--EEEEEcCCC-CC-C--C----
Q 018421 106 SAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS-------KS-SSPLWYAIRRA-SA--HIIVLSSYS-PF-V--K---- 166 (356)
Q Consensus 106 v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~-------~~-~~~~~ys~~~g-~~--~fi~lds~~-~~-~--~---- 166 (356)
++||||+.+.. ..+....+.+..|.-++ +. .-..|--++.+ ++ -|+++-+.. .. . .
T Consensus 75 ~~GNHefd~G~-----~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~ 149 (257)
T cd07408 75 TPGNHEFDYGL-----DRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKD 149 (257)
T ss_pred ccccccccCCH-----HHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecCcCcccccCccccCC
Confidence 78999986321 11111112222221110 00 01124445677 64 566665431 10 0 0
Q ss_pred --ChHHHHHHHHH-HccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceee
Q 018421 167 --YTPQWEWLREE-LKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 237 (356)
Q Consensus 167 --~~~Q~~wL~~~-L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r 237 (356)
...-.+-+++. .....+.+++.+|++.|.+...... .. . ...+.. .-.++|++|.||.|....
T Consensus 150 ~~~~d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~-~~-~----~~~la~--~~~giDvIigGH~H~~~~ 215 (257)
T cd07408 150 VTFEDPIEEAKKVIVAALKAKGADVIVALGHLGVDRTSS-PW-T----STELAA--NVTGIDLIIDGHSHTTIE 215 (257)
T ss_pred cEEecHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCC-Cc-c----HHHHHH--hCCCceEEEeCCCccccc
Confidence 01112223332 1221125678999999998754311 00 0 112222 124899999999998643
No 64
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.44 E-value=1.4e-05 Score=71.75 Aligned_cols=172 Identities=14% Similarity=0.128 Sum_probs=88.1
Q ss_pred EEEEEecCCCCCC---cHHHHHHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYN---SLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~---~~~~l~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
|++++||.=.... -...+.++.+. ++|+++..||++...... . ....+.+..+ .+- ..+.|||++.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl--~-----~~~~~~L~~~--G~D-~iTlGNH~fD 70 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGI--T-----PKIAKELLSA--GVD-VITMGNHTWD 70 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCC--C-----HHHHHHHHhc--CCC-EEEecccccC
Confidence 5789999643322 23445555554 899999999998653111 1 2222223221 334 4466999996
Q ss_pred ccccCCcccccccccccccCCcCCC-CCCCCceEEEEeCCEEEEEEcCC--CCCCCChHHHHHHHHHHccccCCCCCeEE
Q 018421 114 YMTYMGEVVPFKSYLHRYPTPHLAS-KSSSPLWYAIRRASAHIIVLSSY--SPFVKYTPQWEWLREELKKVDREKTPWLI 190 (356)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~ys~~~g~~~fi~lds~--~~~~~~~~Q~~wL~~~L~~~~~~~~~~~I 190 (356)
.. +...+.....+.-.|.+-+ ......|.-++.+++++-+++-. ........-.+-+++.+++.+ .+.+.+|
T Consensus 71 ~g----el~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk-~~~D~II 145 (255)
T cd07382 71 KK----EILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELK-EEADIIF 145 (255)
T ss_pred cc----hHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHh-cCCCEEE
Confidence 32 1111110000001111111 11223467778888776555432 111122222344566666543 2577999
Q ss_pred EEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEecccccee
Q 018421 191 VLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 191 v~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
|.+|--..+ + ...+.. ....+||+++.||+|...
T Consensus 146 V~~H~g~ts---------E--k~ala~-~ldg~VdvIvGtHTHv~t 179 (255)
T cd07382 146 VDFHAEATS---------E--KIALGW-YLDGRVSAVVGTHTHVQT 179 (255)
T ss_pred EEECCCCCH---------H--HHHHHH-hCCCCceEEEeCCCCccC
Confidence 999984311 0 111221 223469999999999853
No 65
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.41 E-value=3.1e-06 Score=83.69 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=51.5
Q ss_pred ccCeEEEEEecCCCCCCc--HHH----HHHHH---------HcCCcEEEEcCccccCCCCCcc--------ccchhHHHH
Q 018421 34 LLTSLESLVSDLGQTYNS--LST----LEHYM---------ESGAQTVLFLGDLSYADRYQFI--------DVGVRWDSW 90 (356)
Q Consensus 34 ~~~~~f~v~gD~g~~~~~--~~~----l~~~~---------~~~~d~vl~~GD~vy~~~~~~~--------~~~~~~~~~ 90 (356)
..+.++++++|+|.+... ... ++.+. +.+++.+|++||++...+.... +...+.+.+
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l 320 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAA 320 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHH
Confidence 357899999999976531 222 23333 3478999999999965332110 001122345
Q ss_pred HHHHHHhhcCCCeEEcccCcccc
Q 018421 91 GRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 91 ~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
.+++..+...+|++++|||||..
T Consensus 321 ~~~L~~L~~~i~V~~ipGNHD~~ 343 (504)
T PRK04036 321 AEYLKQIPEDIKIIISPGNHDAV 343 (504)
T ss_pred HHHHHhhhcCCeEEEecCCCcch
Confidence 55666666678999999999974
No 66
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.38 E-value=2.9e-05 Score=71.06 Aligned_cols=184 Identities=14% Similarity=0.131 Sum_probs=90.7
Q ss_pred cCeEEEEEecCCCCCC----------c----HHHHHHHHH----cCCc-EEEEcCccccCCCCCccccchhHHHHHHHHH
Q 018421 35 LTSLESLVSDLGQTYN----------S----LSTLEHYME----SGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVE 95 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~----------~----~~~l~~~~~----~~~d-~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~ 95 (356)
.+++|+...|+|.... . .+.++++.+ .+++ ++|..||.+.+....... ...+....++++
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~-~~~g~~~~~~mN 82 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDAS-PPPGSYSNPIFR 82 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeee-cCCChHHHHHHH
Confidence 4789999999996421 0 222333332 2555 678899999765432211 113333334443
Q ss_pred HhhcCCCeEEcccCccccccccCCcccccccccccccCCcCCC--------CC---CCCceEEEEeC-CEE--EEEEcCC
Q 018421 96 RSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS--------KS---SSPLWYAIRRA-SAH--IIVLSSY 161 (356)
Q Consensus 96 ~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~--------~~---~~~~~ys~~~g-~~~--fi~lds~ 161 (356)
.+ --=.+++||||+..... + ...+..+.+....|.-.+ .. ....|.-++.+ +++ +|++-+.
T Consensus 83 ~m---gyDa~tlGNHEFd~g~~-~-l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGltt~ 157 (282)
T cd07407 83 MM---PYDLLTIGNHELYNYEV-A-DDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFLFD 157 (282)
T ss_pred hc---CCcEEeecccccCcccc-H-HHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEecc
Confidence 32 22356899999953211 0 000000111111111100 00 11234555665 655 6666442
Q ss_pred CC--C-----CCCh--HHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhc-Ccc-EEEec
Q 018421 162 SP--F-----VKYT--PQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRY-KVD-VVFAG 230 (356)
Q Consensus 162 ~~--~-----~~~~--~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~v~-lvlsG 230 (356)
.. . .+.. .+.+|+.+.|++ .+.+.+|+++|-....... ..+....+.++. ++| ++|+|
T Consensus 158 ~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~~--------~~~~~~~la~~~~~id~~Ii~G 226 (282)
T cd07407 158 FKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDAE--------FKVLHDAIRKIFPDTPIQFLGG 226 (282)
T ss_pred cccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCcc--------HHHHHHHHHHhCCCCCEEEEeC
Confidence 11 0 1111 223488777874 4678999999998643211 111112233333 567 79999
Q ss_pred cccce
Q 018421 231 HVHAY 235 (356)
Q Consensus 231 H~H~y 235 (356)
|+|..
T Consensus 227 HsH~~ 231 (282)
T cd07407 227 HSHVR 231 (282)
T ss_pred Ccccc
Confidence 99974
No 67
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.36 E-value=4.1e-06 Score=76.84 Aligned_cols=156 Identities=17% Similarity=0.172 Sum_probs=77.2
Q ss_pred HHHHHHcCCc-EEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccccccccCCcccccccccccccC
Q 018421 55 LEHYMESGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPT 133 (356)
Q Consensus 55 l~~~~~~~~d-~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~ 133 (356)
++++.+..++ +++.+||++.+...... .+.+...+.++.+ .+. +.++||||+.+... .+.........
T Consensus 41 v~~~r~~~~~~l~ld~GD~~~gs~~~~~---~~g~~~~~~ln~~--g~D-~~~lGNHefd~G~~-----~l~~~~~~~~~ 109 (281)
T cd07409 41 VKELRAENPNVLFLNAGDAFQGTLWYTL---YKGNADAEFMNLL--GYD-AMTLGNHEFDDGVE-----GLAPFLNNLKF 109 (281)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCcchhhh---cCChHHHHHHHhc--CCC-EEEeccccccCCHH-----HHHHHHHhCCC
Confidence 3444444666 57779999865432211 1112223333322 233 55789999964321 11111111111
Q ss_pred CcCCC-----------CCCCCceEEEEeCCEE--EEEEcCCCC--C----C--CChHHHHHHHHHHccccCCCCCeEEEE
Q 018421 134 PHLAS-----------KSSSPLWYAIRRASAH--IIVLSSYSP--F----V--KYTPQWEWLREELKKVDREKTPWLIVL 192 (356)
Q Consensus 134 P~~~~-----------~~~~~~~ys~~~g~~~--fi~lds~~~--~----~--~~~~Q~~wL~~~L~~~~~~~~~~~Iv~ 192 (356)
|.-++ ...-..|.-++.++++ ||++-+... + . ......+.+++.+++.+..+.+.+|++
T Consensus 110 p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l 189 (281)
T cd07409 110 PVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIAL 189 (281)
T ss_pred CEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11110 0011234556788855 555544211 0 0 112234556666555433467899999
Q ss_pred EecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEecccccee
Q 018421 193 MHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 236 (356)
Q Consensus 193 ~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 236 (356)
.|-.... . ..+.++ .++|++|+||.|...
T Consensus 190 ~H~G~~~--------d-------~~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 190 SHSGYEV--------D-------KEIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred eccCchh--------H-------HHHHHcCCCCcEEEeCCcCccc
Confidence 9987421 0 122223 489999999999954
No 68
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=1.9e-06 Score=77.82 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=48.1
Q ss_pred eEEEEEecCCCCCC---------cHHHHHHH----HHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-C-C
Q 018421 37 SLESLVSDLGQTYN---------SLSTLEHY----MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-Y-Q 101 (356)
Q Consensus 37 ~~f~v~gD~g~~~~---------~~~~l~~~----~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 101 (356)
+||++++|+|.+.. ....++++ .+.++|+||++||+++..... ......+.+.++.+.. . +
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~----~~~~~~~~~~l~~l~~~~~i 76 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPP----AEAQELFNAFFRNLSDANPI 76 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCC----HHHHHHHHHHHHHHHhcCCc
Confidence 47999999997542 11233333 345899999999999654321 1122335555666543 3 8
Q ss_pred CeEEcccCcccc
Q 018421 102 PWIWSAGNHEIE 113 (356)
Q Consensus 102 P~~~v~GNHD~~ 113 (356)
|+++++||||..
T Consensus 77 ~v~~i~GNHD~~ 88 (253)
T TIGR00619 77 PIVVISGNHDSA 88 (253)
T ss_pred eEEEEccCCCCh
Confidence 999999999984
No 69
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.32 E-value=6.4e-05 Score=67.85 Aligned_cols=174 Identities=14% Similarity=0.047 Sum_probs=92.8
Q ss_pred eEEEEEecCCCCC-C--cHHHHHHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccc
Q 018421 37 SLESLVSDLGQTY-N--SLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 112 (356)
Q Consensus 37 ~~f~v~gD~g~~~-~--~~~~l~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 112 (356)
.|++++||.=... . -...+..+.+. ++||++..||++... .. .. ....+.+.. ..+-++.+ |||+|
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG-~G-i~-----~~~~~~L~~--~GvDviT~-GNH~~ 70 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHG-KG-LT-----LKIYEFLKQ--SGVNYITM-GNHTW 70 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCC-CC-CC-----HHHHHHHHh--cCCCEEEc-cchhc
Confidence 3789999974322 1 12445555554 899999999998542 11 11 112222222 24566655 99999
Q ss_pred cccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCC--CCCC--ChHHHHHHHHHHccccCCCCCe
Q 018421 113 EYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS--PFVK--YTPQWEWLREELKKVDREKTPW 188 (356)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~--~~~~--~~~Q~~wL~~~L~~~~~~~~~~ 188 (356)
................+....|.. ..+..|..+..++.++-+++-.. .... ...-.+-+++.+++.+ .+.+.
T Consensus 71 Dkge~~~~i~~~~~~lrpanyp~~---~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk-~~~d~ 146 (266)
T TIGR00282 71 FQKLILDVVINQKDLVRPLNFDTS---FAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLK-KDCDL 146 (266)
T ss_pred cCcHHHHHHhccccccccCCCCCC---CCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhh-cCCCE
Confidence 632100000000111111122221 22334566788887777766421 1111 1222333445545432 24679
Q ss_pred EEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEecccccee
Q 018421 189 LIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 189 ~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
+||.+|--.- ..+.....+.+.+|++|+.-|+|...
T Consensus 147 IIVd~Haeat------------sEK~a~~~~ldg~vsaVvGtHtHV~T 182 (266)
T TIGR00282 147 IFVDFHAETT------------SEKNAFGMAFDGYVTAVVGTHTHVPT 182 (266)
T ss_pred EEEEeCCCCH------------HHHHHHHHHhCCCccEEEeCCCCCCC
Confidence 9999997531 12344666778899999999999854
No 70
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.32 E-value=3.7e-05 Score=64.81 Aligned_cols=63 Identities=17% Similarity=0.067 Sum_probs=42.5
Q ss_pred eEEEEEecCCCCCC-cHHHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 37 SLESLVSDLGQTYN-SLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 37 ~~f~v~gD~g~~~~-~~~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
.++.++||+|.... ..+..+.....++|+|||+||.+..... ..+... -..++++|.||.|..
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~---------~~l~~~-----~~~~i~~V~GN~D~~ 65 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTL---------DALEGG-----LAAKLIAVRGNCDGE 65 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccch---------HHhhcc-----cccceEEEEccCCCc
Confidence 57899999998654 2333333444599999999999964321 111111 246899999999974
No 71
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.32 E-value=1.4e-05 Score=71.85 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=45.4
Q ss_pred EEEecCCCCCC--cHHHHHHHH----Hc-----CCcEEEEcCccccCCCCCcc--------ccchhHHHHHHHHHHhhcC
Q 018421 40 SLVSDLGQTYN--SLSTLEHYM----ES-----GAQTVLFLGDLSYADRYQFI--------DVGVRWDSWGRFVERSAAY 100 (356)
Q Consensus 40 ~v~gD~g~~~~--~~~~l~~~~----~~-----~~d~vl~~GD~vy~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 100 (356)
++++|+|.+.. ....++.+. .. ++|.|+++||++........ .....+..+.++++.+...
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 58999996543 122222222 22 46999999999965321000 0011234455666667667
Q ss_pred CCeEEcccCcccc
Q 018421 101 QPWIWSAGNHEIE 113 (356)
Q Consensus 101 ~P~~~v~GNHD~~ 113 (356)
+|+++++||||..
T Consensus 82 ~~v~~ipGNHD~~ 94 (243)
T cd07386 82 IKIIIIPGNHDAV 94 (243)
T ss_pred CeEEEeCCCCCcc
Confidence 9999999999984
No 72
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.27 E-value=1.2e-05 Score=73.96 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=30.3
Q ss_pred CCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEecccccee
Q 018421 184 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 184 ~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
.+.+.+|++.|-......... ....-...+...+...++|++|.||.|...
T Consensus 172 ~~~D~VI~lsH~G~~~~~~~~--~~~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 172 EKPDIVIAATHMGHYDNGEHG--SNAPGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred cCCCEEEEEecccccCCcccc--ccCchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 367899999999875322110 000111223333323589999999999854
No 73
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.24 E-value=7.6e-06 Score=77.02 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=69.3
Q ss_pred cCeEEEEEecCCCCCC--------------cHHHHHHH---HH--cCCcEEEEcCccccCCCCCccccchhHHHHHHHHH
Q 018421 35 LTSLESLVSDLGQTYN--------------SLSTLEHY---ME--SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVE 95 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~--------------~~~~l~~~---~~--~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~ 95 (356)
.+++++.++|.|.-.+ +..-+.+. ++ .+||.++++||+++.+.... +.+|.+..+-+.
T Consensus 47 n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~---~eEf~~~~~Rfk 123 (410)
T KOG3662|consen 47 NSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAG---DEEFKKRYERFK 123 (410)
T ss_pred CceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCC---hHHHHHHHHHHH
Confidence 5899999999875331 11112211 11 29999999999997543332 445644333344
Q ss_pred Hhh---cCCCeEEcccCccccccccCCcccccccccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCCCC
Q 018421 96 RSA---AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYSPF 164 (356)
Q Consensus 96 ~~~---~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~~~ 164 (356)
.+. ..+|++.+|||||..+.... ...+..+|.- ..++..-+|+.++..|+++|++.-.
T Consensus 124 kIf~~k~~~~~~~i~GNhDIGf~~~~-----~~~~i~Rfe~------~fg~~~r~f~v~~~tf~~~d~~~ls 184 (410)
T KOG3662|consen 124 KIFGRKGNIKVIYIAGNHDIGFGNEL-----IPEWIDRFES------VFGPTERRFDVGNLTFVMFDSNALS 184 (410)
T ss_pred HhhCCCCCCeeEEeCCcccccccccc-----chhHHHHHHH------hhcchhhhhccCCceeEEeeehhhc
Confidence 443 25899999999999643211 1112222221 0112345789999999999997543
No 74
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.23 E-value=1.7e-06 Score=75.77 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=39.9
Q ss_pred EEEecCCCCCCcHHH-HHHHH--------HcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHh-----hcCCCeEE
Q 018421 40 SLVSDLGQTYNSLST-LEHYM--------ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERS-----AAYQPWIW 105 (356)
Q Consensus 40 ~v~gD~g~~~~~~~~-l~~~~--------~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~-----~~~~P~~~ 105 (356)
+++||+|......+. ++.+. ..+.|.++++||+++.... + ....+.+..+ ....++++
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~-~-------~~vl~~l~~l~~~~~~~~~~v~~ 72 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPD-V-------IEILWLLYKLEQEAAKAGGKVHF 72 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcC-H-------HHHHHHHHHHHHHHHhcCCeEEE
Confidence 379999987543322 22221 1267999999999964321 1 1222222222 23468999
Q ss_pred cccCcccc
Q 018421 106 SAGNHEIE 113 (356)
Q Consensus 106 v~GNHD~~ 113 (356)
++||||..
T Consensus 73 l~GNHE~~ 80 (208)
T cd07425 73 LLGNHELM 80 (208)
T ss_pred eeCCCcHH
Confidence 99999985
No 75
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.22 E-value=1.5e-05 Score=86.65 Aligned_cols=189 Identities=14% Similarity=0.099 Sum_probs=92.6
Q ss_pred cCeEEEEEecCCCCCCcH----HHHHHHHHcCCcEEEE-cCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccC
Q 018421 35 LTSLESLVSDLGQTYNSL----STLEHYMESGAQTVLF-LGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGN 109 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~~~----~~l~~~~~~~~d~vl~-~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GN 109 (356)
.+++|+.++|+|...... ..++++.+.+|+.+++ +||++.+....+ ..++. ..++.+.....-+.++||
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~---~~~g~---~~~~~ln~lg~d~~~~GN 732 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSN---LLKGL---PVLKMMKEMGYDASTFGN 732 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhh---hcCCh---HHHHHHhCcCCCEEEecc
Confidence 469999999999654332 3345555568887655 999986542211 11112 233333333344669999
Q ss_pred ccccccccC-----Cccc------c-----cccccccccCCcCCC-CCCCCceEEEEeCCEE--EEEEcCCC-C-C----
Q 018421 110 HEIEYMTYM-----GEVV------P-----FKSYLHRYPTPHLAS-KSSSPLWYAIRRASAH--IIVLSSYS-P-F---- 164 (356)
Q Consensus 110 HD~~~~~~~-----~~~~------~-----~~~~~~~~~~P~~~~-~~~~~~~ys~~~g~~~--fi~lds~~-~-~---- 164 (356)
||+.+.... .... . |............+. ...-..|.-++.++++ ||++-+.. . +
T Consensus 733 HEfd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~ 812 (1163)
T PRK09419 733 HEFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPG 812 (1163)
T ss_pred cccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCC
Confidence 998643210 0000 0 100000000000000 0011245556778754 66664421 0 0
Q ss_pred --C--CChHHHHHHHHHHcccc-CCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEecccccee
Q 018421 165 --V--KYTPQWEWLREELKKVD-REKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 236 (356)
Q Consensus 165 --~--~~~~Q~~wL~~~L~~~~-~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 236 (356)
. ......+.+++..++.+ ..+.+.+|++.|......... .. .....+.++ -++|++|.||+|..-
T Consensus 813 ~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~-----~~~~~lA~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 813 NVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GE-----ITGLELAKKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred CcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--cc-----cHHHHHHHhCCCCCEEEeCCCCccc
Confidence 0 01122233333333322 146889999999986532211 01 112333443 379999999999853
No 76
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.19 E-value=5.7e-06 Score=79.65 Aligned_cols=73 Identities=21% Similarity=0.130 Sum_probs=46.4
Q ss_pred eEEEEEecCCCCCC----c-----HHHHHH----HHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-CCC
Q 018421 37 SLESLVSDLGQTYN----S-----LSTLEH----YMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQP 102 (356)
Q Consensus 37 ~~f~v~gD~g~~~~----~-----~~~l~~----~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~~P 102 (356)
+||++++|||.+.. . ...++. +.+.+||+||++||+++.... .. .....+.+++..+.. .+|
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p-~~---~a~~~~~~~l~~L~~~~~~ 76 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSP-PS---YARELYNRFVVNLQQTGCQ 76 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCC-cH---HHHHHHHHHHHHHHhcCCc
Confidence 47999999997631 1 112333 334599999999999864322 11 111234445555543 589
Q ss_pred eEEcccCcccc
Q 018421 103 WIWSAGNHEIE 113 (356)
Q Consensus 103 ~~~v~GNHD~~ 113 (356)
+++++||||..
T Consensus 77 v~~I~GNHD~~ 87 (407)
T PRK10966 77 LVVLAGNHDSV 87 (407)
T ss_pred EEEEcCCCCCh
Confidence 99999999984
No 77
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.18 E-value=5.2e-06 Score=72.36 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=41.9
Q ss_pred EEecCCCCCCcH---HHHHHHHHc---CCcEEEEcCccccCCCCCccccchhHHHHH----HHHHHhh-cCCCeEEcccC
Q 018421 41 LVSDLGQTYNSL---STLEHYMES---GAQTVLFLGDLSYADRYQFIDVGVRWDSWG----RFVERSA-AYQPWIWSAGN 109 (356)
Q Consensus 41 v~gD~g~~~~~~---~~l~~~~~~---~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~----~~~~~~~-~~~P~~~v~GN 109 (356)
+|+|.|.+.... ..+...++. +.|.+.++||++...-.. ..|.+.. ..+..+. +..|+++++||
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd~w~g~-----~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN 76 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFDGWIGD-----DEPPQLHRQVAQKLLRLARKGTRVYYIHGN 76 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhhhhhcC-----CcccHHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 689999874432 333334433 559999999999653221 1333322 2223333 45899999999
Q ss_pred cccc
Q 018421 110 HEIE 113 (356)
Q Consensus 110 HD~~ 113 (356)
||..
T Consensus 77 ~Dfl 80 (237)
T COG2908 77 HDFL 80 (237)
T ss_pred hHHH
Confidence 9974
No 78
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=98.18 E-value=1.8e-05 Score=79.01 Aligned_cols=186 Identities=16% Similarity=0.117 Sum_probs=97.6
Q ss_pred ccCeEEEEEecCCCCCC------------cHH----HHHHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHHHHHHH
Q 018421 34 LLTSLESLVSDLGQTYN------------SLS----TLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVER 96 (356)
Q Consensus 34 ~~~~~f~v~gD~g~~~~------------~~~----~l~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~ 96 (356)
..+++|+...|+|..-. ... .++++.+. +..++|.+||++.+...... ........+.+..
T Consensus 24 ~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~--~~~g~~~~~~mN~ 101 (517)
T COG0737 24 TVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDY--LTKGEPTVDLLNA 101 (517)
T ss_pred ceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccccc--ccCCChHHHHHhh
Confidence 46899999999987532 211 23333333 55689999999976444322 1222333334433
Q ss_pred hhcCCCeEEcccCccccccccCCcccccccccccccCCcCC---------CCCCCCceEEEEeCCE--EEEEEcCC--CC
Q 018421 97 SAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLA---------SKSSSPLWYAIRRASA--HIIVLSSY--SP 163 (356)
Q Consensus 97 ~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~---------~~~~~~~~ys~~~g~~--~fi~lds~--~~ 163 (356)
+ ..=..++||||+.+... .+..+......|... ....-..|.-++.+++ .+|++-+. ..
T Consensus 102 m---~yDa~tiGNHEFd~g~~-----~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~ 173 (517)
T COG0737 102 L---GYDAMTLGNHEFDYGLE-----ALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPT 173 (517)
T ss_pred c---CCcEEeecccccccCHH-----HHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccc
Confidence 2 23466999999964321 011111111111100 0111235667788875 56666641 11
Q ss_pred CC--------CChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccce
Q 018421 164 FV--------KYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAY 235 (356)
Q Consensus 164 ~~--------~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y 235 (356)
+. ......+++++.+.+.++...+.+|++.|-+........... .... .+.. .++|+++.||.|.+
T Consensus 174 ~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~-~~~~----~~~~-~~iD~i~~GH~H~~ 247 (517)
T COG0737 174 WEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEV-PGDV----DVAV-PGIDLIIGGHSHTV 247 (517)
T ss_pred cccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccc-cccc----cccc-cCcceEeccCCccc
Confidence 11 123345666666665543337899999999976543211100 0000 0000 34999999999974
No 79
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.17 E-value=6.5e-06 Score=77.62 Aligned_cols=74 Identities=16% Similarity=0.048 Sum_probs=46.2
Q ss_pred eEEEEEecCCCCCCc---------HHHHHHH----HHcCCcEEEEcCccccCCCCCccccchhHHHHHH-HHHHhh-cCC
Q 018421 37 SLESLVSDLGQTYNS---------LSTLEHY----MESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGR-FVERSA-AYQ 101 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~---------~~~l~~~----~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~-~~~~~~-~~~ 101 (356)
+||+.++|+|.+... ...++++ .+.+||+||++||+++...... ......... +++.+. ..+
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~---~~~~~~~~~~l~~~L~~~gi 77 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAIT---QNTMNFVREKIFDLLKEAGI 77 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCC---HHHHHHHHHHHHHHHHHCCC
Confidence 479999999976321 1233333 3459999999999986532221 111122222 234443 368
Q ss_pred CeEEcccCcccc
Q 018421 102 PWIWSAGNHEIE 113 (356)
Q Consensus 102 P~~~v~GNHD~~ 113 (356)
|+++++||||..
T Consensus 78 ~v~~I~GNHD~~ 89 (340)
T PHA02546 78 TLHVLVGNHDMY 89 (340)
T ss_pred eEEEEccCCCcc
Confidence 999999999974
No 80
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.98 E-value=7.4e-05 Score=75.15 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=87.7
Q ss_pred cCeEEEEEecCCCCCC-------cH----HHHHHHHHc----C-CcEEEEcCccccCCCCCccccchhHHHHHHHHHHhh
Q 018421 35 LTSLESLVSDLGQTYN-------SL----STLEHYMES----G-AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA 98 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~-------~~----~~l~~~~~~----~-~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~ 98 (356)
.+++|+.+.|+|.... .. ..++++.+. . .-++|.+||.+.+...... .......++++
T Consensus 33 ~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~---~~g~~~i~~mN--- 106 (551)
T PRK09558 33 YKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDL---QDAEPDFRGMN--- 106 (551)
T ss_pred eEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhh---cCCchhHHHHh---
Confidence 5799999999997532 11 223334321 3 3579999999864321110 01111222222
Q ss_pred cCCCeEEcccCccccccccCCcccccccccccccCCcCCC-------C-CCCCceEEEEeCCEE--EEEEcCCCC--C--
Q 018421 99 AYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLAS-------K-SSSPLWYAIRRASAH--IIVLSSYSP--F-- 164 (356)
Q Consensus 99 ~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~-------~-~~~~~~ys~~~g~~~--fi~lds~~~--~-- 164 (356)
.--.=..++||||+.+... .+.........|...+ + ..-..|.-++.++++ ||++-+... +
T Consensus 107 ~~g~Da~tlGNHEFD~G~~-----~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~t~~~~~~~~ 181 (551)
T PRK09558 107 LIGYDAMAVGNHEFDNPLS-----VLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLTTEDTAKIGN 181 (551)
T ss_pred cCCCCEEcccccccCcCHH-----HHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEeccccccccC
Confidence 2223355789999975321 0111111111111100 0 011235556788855 555543211 1
Q ss_pred ----C--CChHHHHHHHHHHcccc-CCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEecccccee
Q 018421 165 ----V--KYTPQWEWLREELKKVD-REKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 165 ----~--~~~~Q~~wL~~~L~~~~-~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
. ......+-+++..++.+ ..+.+.+|+++|...............+ ..+..-+...+||++|.||+|..-
T Consensus 182 ~~~~~~~~f~d~~e~a~~~v~~Lk~~~~~D~IV~LsH~G~~~~~~~~~~~~~d--~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 182 PEYFTDIEFRDPAEEAKKVIPELKQTEKPDVIIALTHMGHYDDGEHGSNAPGD--VEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CCCcCCceECCHHHHHHHHHHHHHhccCCCEEEEEeccccccCCccCCCCccH--HHHHHhCCccCceEEEeCCCCccc
Confidence 0 01111222222222222 1467899999999875322110000000 122222222379999999999853
No 81
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.97 E-value=2.4e-05 Score=64.55 Aligned_cols=63 Identities=14% Similarity=0.241 Sum_probs=39.0
Q ss_pred EEecCCCCCCc-HHHHHHHHHc--CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhh-cCCCeEEcccCcc
Q 018421 41 LVSDLGQTYNS-LSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA-AYQPWIWSAGNHE 111 (356)
Q Consensus 41 v~gD~g~~~~~-~~~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~v~GNHD 111 (356)
|+||.+..-+. -+.++.+.+. +.|++|++||..-.... . +.|.+.++... ..+|.|++-|||+
T Consensus 2 V~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~-----~---~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 2 VCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDED-----D---EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred eeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccc-----h---hhHHHHhcCCccCCCCEEEECCCCC
Confidence 67887764332 2334444332 78999999999843221 1 33555554332 3579999999996
No 82
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.93 E-value=0.0001 Score=74.00 Aligned_cols=152 Identities=18% Similarity=0.152 Sum_probs=73.7
Q ss_pred HHHHHcCC-cEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccccccccCCcccccccccccccCC
Q 018421 56 EHYMESGA-QTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFKSYLHRYPTP 134 (356)
Q Consensus 56 ~~~~~~~~-d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~P 134 (356)
+++.+..+ .++|.+||.+.+...... ...... ++.+..-..=..++||||+.+... .+..+......|
T Consensus 42 ~~~r~~~~n~l~ldaGD~~~gs~~~~~---~~g~~~---i~~~N~~g~Da~~lGNHEFd~G~~-----~l~~~~~~~~fp 110 (550)
T TIGR01530 42 NKLRAESKNALVLHAGDAIIGTLYFTL---FGGRAD---AALMNAAGFDFFTLGNHEFDAGNE-----GLKEFLEPLEIP 110 (550)
T ss_pred HHHHhhCCCeEEEECCCCCCCccchhh---cCCHHH---HHHHhccCCCEEEeccccccCCHH-----HHHHHHHhCCCC
Confidence 33443334 589999999965432211 111222 232322234467999999964321 111111111111
Q ss_pred cCCC-------C---CCCCceEEEEeCC--EEEEEEcCCCC-C---CCC-----hHHHHHHH---HHHccccCCCCCeEE
Q 018421 135 HLAS-------K---SSSPLWYAIRRAS--AHIIVLSSYSP-F---VKY-----TPQWEWLR---EELKKVDREKTPWLI 190 (356)
Q Consensus 135 ~~~~-------~---~~~~~~ys~~~g~--~~fi~lds~~~-~---~~~-----~~Q~~wL~---~~L~~~~~~~~~~~I 190 (356)
...+ . ..-..|.-++.++ +-||+|.+... . ... ....+=++ +.|++ .+.+.+|
T Consensus 111 ~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~---~g~D~II 187 (550)
T TIGR01530 111 VLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQ---QGINKII 187 (550)
T ss_pred EEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHh---CCCCEEE
Confidence 1100 0 0112355567787 55777754211 1 000 11111122 33443 4578999
Q ss_pred EEEecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEecccccee
Q 018421 191 VLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 236 (356)
Q Consensus 191 v~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 236 (356)
+++|.... .. ..+.++ .++|++|+||+|.+-
T Consensus 188 ~lsH~g~~--------~d-------~~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 188 LLSHAGFE--------KN-------CEIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred EEecCCcH--------HH-------HHHHhcCCCCCEEEeCCCCccc
Confidence 99998532 11 122333 379999999999954
No 83
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.91 E-value=0.00014 Score=67.59 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=26.2
Q ss_pred CCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEecccccee
Q 018421 184 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 236 (356)
Q Consensus 184 ~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 236 (356)
.+.+.+|+++|-.-+. .. ..+.++ -++|++|.||+|..-
T Consensus 206 ~gvD~II~LsH~g~~~-------~d-------~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 206 QGINKIILLSHLQQIS-------IE-------QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCCEEEEEecccccc-------hH-------HHHHhcCCCCCEEEeCCCCccC
Confidence 4578999999984221 11 123334 379999999999853
No 84
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.83 E-value=3.4e-05 Score=65.45 Aligned_cols=50 Identities=24% Similarity=0.244 Sum_probs=31.6
Q ss_pred HcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 60 ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 60 ~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
+.+||.|+++||+++...... ...+.... ........+|+++++||||..
T Consensus 39 ~~~~d~lii~GDl~~~~~~~~---~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 39 EYGPERLIILGDLKHSFGGLS---RQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred hcCCCEEEEeCcccccccccC---HHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 349999999999996533211 11112111 223333568999999999974
No 85
>PHA02239 putative protein phosphatase
Probab=97.76 E-value=5.9e-05 Score=67.16 Aligned_cols=69 Identities=20% Similarity=0.270 Sum_probs=42.9
Q ss_pred EEEEEecCCCCCCc-HHHHHHHHHc--CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNS-LSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~-~~~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
+++++||+|..... .+.++.+.+. ..|.++++||+++.... + . +....+++.+....++++++||||..
T Consensus 2 ~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~-s---~---~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 2 AIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKR-S---K---DVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred eEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCC-h---H---HHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 68999999975432 2334444333 35999999999975321 1 1 22333333223346899999999974
No 86
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=97.73 E-value=0.00076 Score=60.62 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=93.5
Q ss_pred EEEEecCCCCCC--cHHHHHHHHH---------------cCCcEEEEcCccccCCCCCcc--------------ccchhH
Q 018421 39 ESLVSDLGQTYN--SLSTLEHYME---------------SGAQTVLFLGDLSYADRYQFI--------------DVGVRW 87 (356)
Q Consensus 39 f~v~gD~g~~~~--~~~~l~~~~~---------------~~~d~vl~~GD~vy~~~~~~~--------------~~~~~~ 87 (356)
+++++|.+.+.. ....++.+.+ .+..-+|++||.+...+.... +...+.
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAV 81 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHHH
Confidence 678888876543 2222222221 134479999999976542111 112334
Q ss_pred HHHHHHHHHhhcCCCeEEcccCccccccccCCcccccc-cccccccCCcCCCCCCCCceEEEEeCCEEEEEEcCCC----
Q 018421 88 DSWGRFVERSAAYQPWIWSAGNHEIEYMTYMGEVVPFK-SYLHRYPTPHLASKSSSPLWYAIRRASAHIIVLSSYS---- 162 (356)
Q Consensus 88 ~~~~~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~-~~~~~~~~P~~~~~~~~~~~ys~~~g~~~fi~lds~~---- 162 (356)
+.+.+++..+...+|+...|||||-.. ..+.. +.+. .+...-.... .-..-..-|.|++++++|++.....
T Consensus 82 ~~ld~~l~~l~~~i~V~imPG~~Dp~~-~~lPQ-qplh~~lfp~s~~~~--~~~~vtNP~~~~i~g~~vLgtsGqni~Di 157 (257)
T cd07387 82 KELDNFLSQLASSVPVDLMPGEFDPAN-HSLPQ-QPLHRCLFPKSSNYS--TLNLVTNPYEFSIDGVRVLGTSGQNVDDI 157 (257)
T ss_pred HHHHHHHHhhhcCCeEEECCCCCCccc-ccCCC-CCCCHHHhhcccccC--CcEEeCCCeEEEECCEEEEEECCCCHHHH
Confidence 556667777778899999999999842 11111 1111 1100000000 0001122367999999999887642
Q ss_pred -CCCCChHHHHHHHHHHcccc-CCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeee
Q 018421 163 -PFVKYTPQWEWLREELKKVD-REKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 238 (356)
Q Consensus 163 -~~~~~~~Q~~wL~~~L~~~~-~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 238 (356)
.+...+.-++.|++.|+-.- ...++=+ -|.|+.... .+++-+.-++++++||.|.|+..
T Consensus 158 ~ky~~~~~~l~~me~~L~wrHlaPTaPDT-----L~~yP~~~~------------Dpfvi~~~PhVyf~Gnq~~f~t~ 218 (257)
T cd07387 158 LKYSSLESRLDILERTLKWRHIAPTAPDT-----LWCYPFTDR------------DPFILEECPHVYFAGNQPKFGTK 218 (257)
T ss_pred HHhCCCCCHHHHHHHHHHhcccCCCCCCc-----cccccCCCC------------CceeecCCCCEEEeCCCcceeee
Confidence 12233445778888876410 0011100 011111110 12222345899999999998754
No 87
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.54 E-value=0.0011 Score=68.93 Aligned_cols=47 Identities=26% Similarity=0.172 Sum_probs=28.6
Q ss_pred CCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccce
Q 018421 184 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAY 235 (356)
Q Consensus 184 ~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y 235 (356)
.+++.||++.|-.+.........++ .. ..+.+--+||++|.||+|..
T Consensus 308 ~GaDvIIaLsH~G~~~d~~~~~~En--~~---~~LA~v~GIDaIvgGHsH~~ 354 (814)
T PRK11907 308 AGADIVLVLSHSGIGDDQYEVGEEN--VG---YQIASLSGVDAVVTGHSHAE 354 (814)
T ss_pred cCCCEEEEEeCCCcccccccccccc--hh---hHHhcCCCCCEEEECCCCCc
Confidence 4688999999998643211100111 11 12222358999999999994
No 88
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.52 E-value=0.00016 Score=65.89 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=41.9
Q ss_pred EEEEEecCCCCCCcHH-HHHHHH-HcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNSLS-TLEHYM-ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~-~l~~~~-~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
+++++||+|....... .++++. +.+.|.++++||+++.+.. + ....+.+..+ ..++++|.||||..
T Consensus 2 ~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~-s-------~~vl~~l~~l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 2 ATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPD-S-------LEVLRFVKSL--GDSAVTVLGNHDLH 69 (275)
T ss_pred cEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcC-H-------HHHHHHHHhc--CCCeEEEecChhHH
Confidence 5789999998755433 333332 1267999999999974321 1 2223333322 34789999999984
No 89
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.47 E-value=0.00019 Score=64.01 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=42.1
Q ss_pred EEEEEecCCCCCCcHH-HHHHHH---Hc-------CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEc
Q 018421 38 LESLVSDLGQTYNSLS-TLEHYM---ES-------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWS 106 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~-~l~~~~---~~-------~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v 106 (356)
+++++||+|....... .++.+. +. +.|.++++||+++.... + ....+.+..+.....++++
T Consensus 2 ~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~-s-------~evl~~l~~l~~~~~~~~v 73 (234)
T cd07423 2 PFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD-S-------PEVLRLVMSMVAAGAALCV 73 (234)
T ss_pred CeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC-H-------HHHHHHHHHHhhCCcEEEE
Confidence 6899999998754332 333331 10 25899999999975321 1 2233344433333468899
Q ss_pred ccCcccc
Q 018421 107 AGNHEIE 113 (356)
Q Consensus 107 ~GNHD~~ 113 (356)
.||||..
T Consensus 74 ~GNHE~~ 80 (234)
T cd07423 74 PGNHDNK 80 (234)
T ss_pred ECCcHHH
Confidence 9999974
No 90
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.47 E-value=0.00021 Score=62.53 Aligned_cols=64 Identities=20% Similarity=0.153 Sum_probs=39.5
Q ss_pred EEEEEecCCCCCCcHHH-HHHHHH-cCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNSLST-LEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~~-l~~~~~-~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
|++++||+|......+. ++.+.. .++|.++++||+++..... .+.++.+.. .+++++.||||..
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~-----------~~~~~~l~~-~~~~~v~GNhe~~ 67 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPES-----------LACLELLLE-PWFHAVRGNHEQM 67 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCH-----------HHHHHHHhc-CCEEEeECCChHH
Confidence 58999999965432222 222211 2589999999999643211 122333322 4689999999974
No 91
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.46 E-value=0.0017 Score=70.90 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=30.8
Q ss_pred CCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEecccccee
Q 018421 184 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 236 (356)
Q Consensus 184 ~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 236 (356)
.+++.+|++.|-..-...... ..+ .....+.++ -++|++|.||+|..-
T Consensus 233 ~gaDvII~l~H~G~~~~~~~~--~~e---n~~~~la~~~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 233 GGADVIVALAHSGIESEYQSS--GAE---DSVYDLAEKTKGIDAIVAGHQHGLF 281 (1163)
T ss_pred cCCCEEEEEeccCcCCCCCCC--Ccc---hHHHHHHHhCCCCcEEEeCCCcccc
Confidence 568899999999875432111 111 122334434 489999999999864
No 92
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.46 E-value=0.00034 Score=61.87 Aligned_cols=69 Identities=20% Similarity=0.416 Sum_probs=45.0
Q ss_pred eEEEEEecCCCCCCc--------------HHHHHHHHH----cCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhh
Q 018421 37 SLESLVSDLGQTYNS--------------LSTLEHYME----SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA 98 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~--------------~~~l~~~~~----~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~ 98 (356)
-+.++++|+|.+... .++++++.+ .+||.|+++||+....... ..|..+.+.++.+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~-----~~~~~~~~~l~~~- 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKG-----LEWRFIREFIEVT- 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCCh-----HHHHHHHHHHHhc-
Confidence 446799999976321 134554433 3899999999999653321 2334444455443
Q ss_pred cCCCeEEcccCccc
Q 018421 99 AYQPWIWSAGNHEI 112 (356)
Q Consensus 99 ~~~P~~~v~GNHD~ 112 (356)
..+++.|+||||.
T Consensus 89 -~~~v~~V~GNHD~ 101 (225)
T TIGR00024 89 -FRDLILIRGNHDA 101 (225)
T ss_pred -CCcEEEECCCCCC
Confidence 3599999999996
No 93
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=97.35 E-value=0.0036 Score=55.95 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=38.0
Q ss_pred HHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeee
Q 018421 172 EWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 239 (356)
Q Consensus 172 ~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 239 (356)
+-+++.+++++ .+.+.+||+.|-..-... ........+...+...++|+++.||.|..+-..
T Consensus 162 ~~~~~~i~~lr-~~~D~vIv~~H~G~e~~~-----~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E 223 (239)
T cd07381 162 ERIAADIAEAK-KKADIVIVSLHWGVEYSY-----YPTPEQRELARALIDAGADLVIGHHPHVLQGIE 223 (239)
T ss_pred HHHHHHHHHHh-hcCCEEEEEecCcccCCC-----CCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeE
Confidence 34555555543 247899999997542111 111223344445556799999999999977543
No 94
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.35 E-value=0.0045 Score=64.21 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=28.8
Q ss_pred CCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEecccccee
Q 018421 184 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAYE 236 (356)
Q Consensus 184 ~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y~ 236 (356)
..++.||++.|-.+-.... ....+. .... +++ -+||++|+||+|..-
T Consensus 243 ~GaDvIIaLsH~G~~~d~~---~~~~en--a~~~-l~~v~gID~IlgGHsH~~~ 290 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGY---NVGMEN--ASYY-LTEVPGVDAVLMGHSHTEV 290 (780)
T ss_pred cCCCEEEEEeccCcccccc---cccchh--hhHH-HhcCCCCCEEEECCCCCcc
Confidence 4678999999998643211 111111 1111 234 389999999999854
No 95
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.32 E-value=0.00037 Score=62.62 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=40.8
Q ss_pred EEEEEecCCCCCCcHH-HHHHHHH---------cCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcc
Q 018421 38 LESLVSDLGQTYNSLS-TLEHYME---------SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSA 107 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~-~l~~~~~---------~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~ 107 (356)
+++++||+|....... .++++.- ...|.++++||+++.+ ..+ ....+.+..+....+++++.
T Consensus 2 ~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRG-p~S-------~~vl~~~~~~~~~~~~~~l~ 73 (245)
T PRK13625 2 KYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRG-PHS-------LRMIEIVWELVEKKAAYYVP 73 (245)
T ss_pred ceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCC-cCh-------HHHHHHHHHHhhCCCEEEEe
Confidence 5789999998754432 2322211 0236899999999753 221 11222333333345799999
Q ss_pred cCcccc
Q 018421 108 GNHEIE 113 (356)
Q Consensus 108 GNHD~~ 113 (356)
||||..
T Consensus 74 GNHE~~ 79 (245)
T PRK13625 74 GNHCNK 79 (245)
T ss_pred CccHHH
Confidence 999964
No 96
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.29 E-value=0.00066 Score=57.30 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=27.8
Q ss_pred CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 62 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 62 ~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
++|.|+++||++..... ..+.+.++.+ ..|++.|+||||..
T Consensus 42 ~~d~vi~~GDl~~~~~~---------~~~~~~l~~~--~~~~~~v~GNHD~~ 82 (168)
T cd07390 42 PDDTVYHLGDFSFGGKA---------GTELELLSRL--NGRKHLIKGNHDSS 82 (168)
T ss_pred CCCEEEEeCCCCCCCCh---------HHHHHHHHhC--CCCeEEEeCCCCch
Confidence 78999999999964321 1112233322 35899999999974
No 97
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.29 E-value=0.00041 Score=61.34 Aligned_cols=66 Identities=21% Similarity=0.227 Sum_probs=40.7
Q ss_pred EEEecCCCCCCcHH-HHHHHHHc--------CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCc
Q 018421 40 SLVSDLGQTYNSLS-TLEHYMES--------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNH 110 (356)
Q Consensus 40 ~v~gD~g~~~~~~~-~l~~~~~~--------~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNH 110 (356)
.++||+|.+....+ .++++... ..|.++++||+++.... + ....+.+..+.....++++.|||
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~-S-------~~vl~~l~~l~~~~~~~~l~GNH 73 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPE-I-------RELLEIVKSMVDAGHALAVMGNH 73 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCC-H-------HHHHHHHHHhhcCCCEEEEEccC
Confidence 68999998755432 33333211 35799999999975322 1 22333333333334789999999
Q ss_pred ccc
Q 018421 111 EIE 113 (356)
Q Consensus 111 D~~ 113 (356)
|..
T Consensus 74 E~~ 76 (222)
T cd07413 74 EFN 76 (222)
T ss_pred cHH
Confidence 974
No 98
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.27 E-value=0.0078 Score=48.96 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=40.1
Q ss_pred EEEEEecCCCCCC---------c-----HHHHHHHHHc-C-CcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCC
Q 018421 38 LESLVSDLGQTYN---------S-----LSTLEHYMES-G-AQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ 101 (356)
Q Consensus 38 ~f~v~gD~g~~~~---------~-----~~~l~~~~~~-~-~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (356)
.+.++||+|-+.. . ...+..+.+. + -|.+.++||++..... -..+..+++.+..
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~--------~~~a~~IlerLnG-- 74 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANR--------ERAAGLILERLNG-- 74 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccch--------hhHHHHHHHHcCC--
Confidence 3568889886531 1 1223344443 4 4789999999954321 1345566666544
Q ss_pred CeEEcccCccc
Q 018421 102 PWIWSAGNHEI 112 (356)
Q Consensus 102 P~~~v~GNHD~ 112 (356)
....|+||||-
T Consensus 75 rkhlv~GNhDk 85 (186)
T COG4186 75 RKHLVPGNHDK 85 (186)
T ss_pred cEEEeeCCCCC
Confidence 34899999997
No 99
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0049 Score=59.18 Aligned_cols=80 Identities=14% Similarity=0.141 Sum_probs=54.3
Q ss_pred ccCeEEEEEecCCCCCCc--H----HHHHHHH-----HcCCcEEEEcCccccCCCCCcc--------ccchhHHHHHHHH
Q 018421 34 LLTSLESLVSDLGQTYNS--L----STLEHYM-----ESGAQTVLFLGDLSYADRYQFI--------DVGVRWDSWGRFV 94 (356)
Q Consensus 34 ~~~~~f~v~gD~g~~~~~--~----~~l~~~~-----~~~~d~vl~~GD~vy~~~~~~~--------~~~~~~~~~~~~~ 94 (356)
...++.++++|.|.+... . ..++.+. +.+...++++||.|++-+.... +...|++.+.+++
T Consensus 223 ~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L 302 (481)
T COG1311 223 DERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFL 302 (481)
T ss_pred CcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHH
Confidence 367889999999986532 1 2223322 1245789999999986554321 1234566677777
Q ss_pred HHhhcCCCeEEcccCcccc
Q 018421 95 ERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 95 ~~~~~~~P~~~v~GNHD~~ 113 (356)
..+-..+-++..|||||..
T Consensus 303 ~~vp~~I~v~i~PGnhDa~ 321 (481)
T COG1311 303 DQVPEHIKVFIMPGNHDAV 321 (481)
T ss_pred hhCCCCceEEEecCCCCcc
Confidence 7776778899999999984
No 100
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.20 E-value=0.00039 Score=61.31 Aligned_cols=64 Identities=22% Similarity=0.141 Sum_probs=40.7
Q ss_pred EEEEEecCCCCCCcH-HHHHHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNSL-STLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~-~~l~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
+++++||+|...... +.++.+... +.|-++++||+++.+..+ .+.++.+.. ..++++.||||..
T Consensus 18 ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s-----------~~vl~~l~~-~~~~~v~GNHE~~ 83 (218)
T PRK11439 18 HIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQS-----------LRCLQLLEE-HWVRAVRGNHEQM 83 (218)
T ss_pred eEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCH-----------HHHHHHHHc-CCceEeeCchHHH
Confidence 889999999875433 333333223 578999999999653321 122222222 3467899999974
No 101
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=97.19 E-value=0.0039 Score=63.57 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=28.4
Q ss_pred CCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEeccccce
Q 018421 184 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAY 235 (356)
Q Consensus 184 ~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y 235 (356)
..++.+|++.|-......... ..+.. ...+.+ -+||++|+||+|..
T Consensus 194 ~gaDvII~LsH~G~~~d~~~~--~~en~----~~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 194 KGADIIVALAHSGISADPYQP--GAENS----AYYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred cCCCEEEEEeccCcCCCcccc--ccchH----HHHHhcCCCCCEEEcCCCCcc
Confidence 467899999999865321100 01111 112334 48999999999984
No 102
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=97.19 E-value=0.0032 Score=64.36 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=28.0
Q ss_pred CCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHh-cCccEEEeccccce
Q 018421 184 EKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-YKVDVVFAGHVHAY 235 (356)
Q Consensus 184 ~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~v~lvlsGH~H~y 235 (356)
+.++.+|++.|-.+-........ +. .... +.+ -++|++|.||+|..
T Consensus 217 ~gaDvII~LsH~G~~~d~~~~~a--en---~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 217 KGADIVVAIPHSGISADPYKAMA--EN---SVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred cCCCEEEEEecCCcCCCCccccc--cc---hhHH-HhcCCCCCEEEeCCCCcc
Confidence 46789999999986432110000 11 1111 233 48999999999985
No 103
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.19 E-value=0.00059 Score=60.15 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=40.1
Q ss_pred EEEEEecCCCCCCcHHH-HHHHH-HcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNSLST-LEHYM-ESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~~-l~~~~-~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
|++++||+|......+. ++.+. +.+.|.++++||+++.+..+ .+.++.+.. ..++.+.||||..
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~-----------~~~l~~l~~-~~~~~v~GNHE~~ 81 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPES-----------LNVLRLLNQ-PWFISVKGNHEAM 81 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCH-----------HHHHHHHhh-CCcEEEECchHHH
Confidence 89999999976443322 23322 12679999999999743221 122222222 3578999999974
No 104
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=97.13 E-value=0.027 Score=49.47 Aligned_cols=174 Identities=14% Similarity=0.177 Sum_probs=96.4
Q ss_pred eEEEEEecCCCCCC---cHHHHHHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccc
Q 018421 37 SLESLVSDLGQTYN---SLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 112 (356)
Q Consensus 37 ~~f~v~gD~g~~~~---~~~~l~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 112 (356)
.|++++||.=.... -.+-+..+.+. ++||||..|-++-.. . .-.|+.+.++++. .+- +.+.|||=|
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G-~-----Git~k~y~~l~~~---G~d-viT~GNH~w 70 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGG-F-----GITEKIYKELLEA---GAD-VITLGNHTW 70 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCC-c-----CCCHHHHHHHHHh---CCC-EEecccccc
Confidence 47899999743322 12344455554 899999999998542 2 2233555555543 333 458999999
Q ss_pred cccccCCcccccccccccccCCcCCCC-CCCCceEEEEeCCEEEEEEcCCC--CCC-CChHHHHHHHHHHccccCCCCCe
Q 018421 113 EYMTYMGEVVPFKSYLHRYPTPHLASK-SSSPLWYAIRRASAHIIVLSSYS--PFV-KYTPQWEWLREELKKVDREKTPW 188 (356)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~ys~~~g~~~fi~lds~~--~~~-~~~~Q~~wL~~~L~~~~~~~~~~ 188 (356)
.- + +..+|..-..++--|.+-+. ..+..|.-|...+..+.+++-.. ... ..+.-..-+++.|...+ .+.+.
T Consensus 71 d~-~---ei~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~-~~~~~ 145 (266)
T COG1692 71 DQ-K---EILDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIK-LGTDL 145 (266)
T ss_pred cc-h---HHHHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCc-cCCce
Confidence 52 1 11111111122333444322 23345677788887777766421 111 12233444666666643 34568
Q ss_pred EEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceee
Q 018421 189 LIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYER 237 (356)
Q Consensus 189 ~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r 237 (356)
+||-+|.-.-|.-. -.-.+-+..|.+|+-=|+|....
T Consensus 146 iiVDFHAEtTSEK~------------a~g~yldGrvsavvGTHTHV~Ta 182 (266)
T COG1692 146 IIVDFHAETTSEKN------------AFGWYLDGRVSAVVGTHTHVPTA 182 (266)
T ss_pred EEEEccccchhhhh------------hhheEEcCeEEEEEeccCccccc
Confidence 89988874322110 01123355899999999998543
No 105
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.11 E-value=0.00072 Score=60.97 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=40.0
Q ss_pred EEEecCCCCCCcHH-HHHHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 40 SLVSDLGQTYNSLS-TLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 40 ~v~gD~g~~~~~~~-~l~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
.++||+|......+ .++++.-. +.|.++++||+++.+.. + .+..+++..+. ..+..|+||||..
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~-s-------~evl~~l~~l~--~~v~~VlGNHD~~ 67 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPD-S-------LETLRFVKSLG--DSAKTVLGNHDLH 67 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcC-H-------HHHHHHHHhcC--CCeEEEcCCchHH
Confidence 68999998754433 23333222 57999999999975321 1 22233333322 4788999999984
No 106
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.09 E-value=0.0011 Score=60.32 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=41.7
Q ss_pred EEEEEecCCCCCCcH-HHHHHHHHc------CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCC---CeEEcc
Q 018421 38 LESLVSDLGQTYNSL-STLEHYMES------GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ---PWIWSA 107 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~-~~l~~~~~~------~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~---P~~~v~ 107 (356)
+++++||+|...... ..++.+.+. ..+.+|++||+++.... + ....+++..+.... .++++.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPd-S-------~eVld~L~~l~~~~~~~~vv~Lr 74 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPE-T-------RKVIDFLISLPEKHPKQRHVFLC 74 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCC-H-------HHHHHHHHHhhhcccccceEEEe
Confidence 578999999876543 334444332 35689999999975321 1 22233333332222 578999
Q ss_pred cCcccc
Q 018421 108 GNHEIE 113 (356)
Q Consensus 108 GNHD~~ 113 (356)
||||..
T Consensus 75 GNHE~~ 80 (304)
T cd07421 75 GNHDFA 80 (304)
T ss_pred cCChHH
Confidence 999964
No 107
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=96.94 E-value=0.0015 Score=57.73 Aligned_cols=66 Identities=20% Similarity=0.128 Sum_probs=39.5
Q ss_pred EEEecCCCCCCcH-HHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-CCCeEEcccCcccc
Q 018421 40 SLVSDLGQTYNSL-STLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 113 (356)
Q Consensus 40 ~v~gD~g~~~~~~-~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 113 (356)
.++||+|...... +.++.+....+|.+|++||+++.... . ......+..+.. ..+++.+.||||..
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~-~-------~~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPD-S-------VEVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCC-c-------HHHHHHHHHhcCCCCcEEEEccCchhh
Confidence 3799999764322 22222222378999999999965321 1 122222322221 35899999999985
No 108
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=96.94 E-value=0.0077 Score=55.45 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=94.1
Q ss_pred eEEEEEecCCCCCCcH-HHHHHHHHc---CCcEEEEcCccccCCCCCc---cccchhHHHHHHHHHHh----hcCCCeEE
Q 018421 37 SLESLVSDLGQTYNSL-STLEHYMES---GAQTVLFLGDLSYADRYQF---IDVGVRWDSWGRFVERS----AAYQPWIW 105 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~-~~l~~~~~~---~~d~vl~~GD~vy~~~~~~---~~~~~~~~~~~~~~~~~----~~~~P~~~ 105 (356)
+|++|-|=+|..-+.. +++..+.+. +.|++|++||.-.-.+... ......+..+..++.-. .+.+|.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 3677777776654432 456666654 8999999999863322221 11223333333444322 34578899
Q ss_pred cccCccccccccCCcccccccccccccCCcCCCCCCCCceE-----EEEeCCEEEEEEcCC---CCCC-------CC---
Q 018421 106 SAGNHEIEYMTYMGEVVPFKSYLHRYPTPHLASKSSSPLWY-----AIRRASAHIIVLSSY---SPFV-------KY--- 167 (356)
Q Consensus 106 v~GNHD~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~y-----s~~~g~~~fi~lds~---~~~~-------~~--- 167 (356)
+-||||... ... ...|-. |-- .+.|| .+.+|++|+-+|..- .+|. +.
T Consensus 81 IGGNHEAsn--yL~-eLpyGG----wVA--------pNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~s 145 (456)
T KOG2863|consen 81 IGGNHEASN--YLQ-ELPYGG----WVA--------PNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNS 145 (456)
T ss_pred ecCchHHHH--HHH-hcccCc----eec--------cceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccch
Confidence 999999741 000 011111 111 13344 367899999998762 1111 10
Q ss_pred -------hHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHH-------H----------HHHHHHHHHhcC
Q 018421 168 -------TPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGES-------M----------RAAFESWFVRYK 223 (356)
Q Consensus 168 -------~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~-------~----------~~~l~~l~~~~~ 223 (356)
-.+.+- ..|.+. +.+.=|++.|-=+-....+ ++... . ...++.||++-+
T Consensus 146 tiRsiYHvR~~dV--~~Lkql---k~piDIfLSHDWP~GI~~y--Gd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~Lk 218 (456)
T KOG2863|consen 146 TIRSIYHVRISDV--AKLKQL---KHPIDIFLSHDWPRGIYYY--GDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLK 218 (456)
T ss_pred hhhhhhhhhhhhh--HHHHhh---cCcceEEeecCCCcchhhc--CCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhC
Confidence 112211 122332 2345588888644322211 11111 1 236778888999
Q ss_pred ccEEEeccccc
Q 018421 224 VDVVFAGHVHA 234 (356)
Q Consensus 224 v~lvlsGH~H~ 234 (356)
+..+|+.|.|.
T Consensus 219 P~yWfsAHLH~ 229 (456)
T KOG2863|consen 219 PQYWFSAHLHV 229 (456)
T ss_pred cchhhhhhHhh
Confidence 99999999997
No 109
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.86 E-value=0.019 Score=51.35 Aligned_cols=60 Identities=17% Similarity=0.223 Sum_probs=36.8
Q ss_pred HHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeee
Q 018421 174 LREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 239 (356)
Q Consensus 174 L~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 239 (356)
+++.+++++ .+.+.+||+.|--.-.... . ......+...+.+.++|+++.||.|..+...
T Consensus 162 i~~~i~~lr-~~~D~vIv~~H~G~e~~~~----p-~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e 221 (239)
T smart00854 162 ILADIARAR-KKADVVIVSLHWGVEYQYE----P-TDEQRELAHALIDAGADVVIGHHPHVLQPIE 221 (239)
T ss_pred HHHHHHHHh-ccCCEEEEEecCccccCCC----C-CHHHHHHHHHHHHcCCCEEEcCCCCcCCceE
Confidence 444444443 3578999999987532111 1 1122334444445789999999999987654
No 110
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=96.74 E-value=0.045 Score=48.60 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=80.4
Q ss_pred EEecCCCCCC---cHHHHHHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccccccc
Q 018421 41 LVSDLGQTYN---SLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIEYMT 116 (356)
Q Consensus 41 v~gD~g~~~~---~~~~l~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~~~~ 116 (356)
++||.=.... -.+.+..+.+. ++||||..|.++.. |..- ....+.++++ ..+-++ +.|||=|...
T Consensus 2 fiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~-G~Gi-----t~~~~~~L~~---~GvDvi-T~GNH~wdkk- 70 (253)
T PF13277_consen 2 FIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAAG-GFGI-----TPKIAEELFK---AGVDVI-TMGNHIWDKK- 70 (253)
T ss_dssp EE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTT-TSS-------HHHHHHHHH---HT-SEE-E--TTTTSST-
T ss_pred eEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCC-CCCC-----CHHHHHHHHh---cCCCEE-ecCcccccCc-
Confidence 6777532211 12334455544 99999999999854 2211 1133333332 234444 8999999521
Q ss_pred cCCcccccccccccccCCcCCCC-CCCCceEEEEeCCEEEEEEcCC--CCCCCChHHHHHHHHHHccccCCCCCeEEEEE
Q 018421 117 YMGEVVPFKSYLHRYPTPHLASK-SSSPLWYAIRRASAHIIVLSSY--SPFVKYTPQWEWLREELKKVDREKTPWLIVLM 193 (356)
Q Consensus 117 ~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~ys~~~g~~~fi~lds~--~~~~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~ 193 (356)
+...+-.-..+.--|.|.+. ..+..|..++.++.++.++|-. ........-...+++.|++. +.+.+.+||=+
T Consensus 71 ---ei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l-~~~~~~iiVDF 146 (253)
T PF13277_consen 71 ---EIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEEL-KEETDIIIVDF 146 (253)
T ss_dssp ---THHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEEE
T ss_pred ---HHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhc-cccCCEEEEEe
Confidence 11111111122233444322 3446688899999888887752 22222233444555555553 24677899988
Q ss_pred ecccccCCCCcccccHHHHHHHHHHHHhcCccEEEecccccee
Q 018421 194 HVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 194 H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
|-=.-+ + +.-.-.+.+-+|.+|+--|+|.-.
T Consensus 147 HAEaTS-------E-----K~A~g~~lDGrvsaV~GTHTHVqT 177 (253)
T PF13277_consen 147 HAEATS-------E-----KQAMGWYLDGRVSAVVGTHTHVQT 177 (253)
T ss_dssp E-S-HH-------H-----HHHHHHHHBTTBSEEEEESSSS-B
T ss_pred ecCcHH-------H-----HHHHHHHhCCcEEEEEeCCCCccC
Confidence 863211 0 122334556799999999999843
No 111
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.71 E-value=0.0028 Score=57.52 Aligned_cols=66 Identities=26% Similarity=0.309 Sum_probs=40.9
Q ss_pred EEEEEecCCCCCCcHH-HHHHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNSLS-TLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~-~l~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
+..+|||+|....... .++++.-. ..|-++++||+++.+..+ ....+++..+. ..+..|.||||..
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~s--------levL~~l~~l~--~~~~~VlGNHD~~ 69 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGS--------LEVLRYVKSLG--DAVRLVLGNHDLH 69 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCH--------HHHHHHHHhcC--CCeEEEEChhHHH
Confidence 4689999998765433 33443312 568999999999753321 12233333321 2466899999974
No 112
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.035 Score=44.79 Aligned_cols=85 Identities=16% Similarity=0.235 Sum_probs=53.7
Q ss_pred HHHHHHHhcCccEEEeccccceeeeeeecCceecccCCcccccCCCCCCEEEEeCCCCCCCCCCCCCCCCCCCccceeeC
Q 018421 214 AFESWFVRYKVDVVFAGHVHAYERSYRISNLHYNISSGDCFPVPDKSAPVYITVGDGGNQEGLAGKFRYPQPDYSAFREA 293 (356)
Q Consensus 214 ~l~~l~~~~~v~lvlsGH~H~y~r~~~~~~~~~~v~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~ 293 (356)
.|.-+-++.+||+.++||+|.++... .+|-.||--|++-... +..+. ...
T Consensus 98 sL~~LaRqldvDILl~G~Th~f~Aye-------------------~eg~ffvnPGSaTGAf----n~~~t-------~~~ 147 (183)
T KOG3325|consen 98 SLALLARQLDVDILLTGHTHKFEAYE-------------------HEGKFFVNPGSATGAF----NVSDT-------DII 147 (183)
T ss_pred HHHHHHHhcCCcEEEeCCceeEEEEE-------------------eCCcEEeCCCcccCCC----ccccc-------CCC
Confidence 44555567899999999999988765 2445566555533211 11111 113
Q ss_pred cccEEEEEEecCceEEEEEEEcCCCCeeeeeeEEEEe
Q 018421 294 SYGHSTLEIKNRTHAFYHWNRNDDGKKVATDSFILHN 330 (356)
Q Consensus 294 ~~Gf~~l~v~~~~~~~~~~~~~~dg~~~~~D~f~i~~ 330 (356)
.+.|..|+|...+.+.+- ++-.||++. +|.....|
T Consensus 148 ~PSFvLmDiqg~~~v~Yv-Y~lidgeVk-Vdki~ykK 182 (183)
T KOG3325|consen 148 VPSFVLMDIQGSTVVTYV-YRLIDGEVK-VDKIEYKK 182 (183)
T ss_pred CCceEEEEecCCEEEEEE-eeeeCCcEE-EEEEEecC
Confidence 567999999766655444 455688874 78877654
No 113
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.55 E-value=0.0085 Score=52.71 Aligned_cols=73 Identities=23% Similarity=0.288 Sum_probs=46.6
Q ss_pred eEEEEEecCCCCCCc-------------H-H---HHHHHHH-cCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhh
Q 018421 37 SLESLVSDLGQTYNS-------------L-S---TLEHYME-SGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSA 98 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~-------------~-~---~l~~~~~-~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~ 98 (356)
-+.++++|.|.+... . + .+.++.+ .+|+-+|++||+-.+-+... ...|+....+++.+.
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~---~~e~~~~~~f~~~~~ 96 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSL---RQEKEEVREFLELLD 96 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccc---cccHHHHHHHHHHhc
Confidence 456799999976421 1 1 2233333 49999999999986543321 344555555555544
Q ss_pred cCCCeEEcccCcccc
Q 018421 99 AYQPWIWSAGNHEIE 113 (356)
Q Consensus 99 ~~~P~~~v~GNHD~~ 113 (356)
.. -++.+.||||-.
T Consensus 97 ~~-evi~i~GNHD~~ 110 (235)
T COG1407 97 ER-EVIIIRGNHDNG 110 (235)
T ss_pred cC-cEEEEeccCCCc
Confidence 43 599999999974
No 114
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.03 Score=55.07 Aligned_cols=57 Identities=21% Similarity=0.414 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHh-c-CccE-EEecccccee
Q 018421 168 TPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVR-Y-KVDV-VFAGHVHAYE 236 (356)
Q Consensus 168 ~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~-~v~l-vlsGH~H~y~ 236 (356)
-.|.+|-.+.++. .+.+.+|+++|.|.-.... ++.+...+++ + ++++ ||-||.|...
T Consensus 211 i~~~~~~~~m~~~---~~idlii~lgH~~~~~~~e---------~~~~~~~ir~~~p~t~IqviGGHshird 270 (602)
T KOG4419|consen 211 ITQSEWEQDMVNT---TDIDLIIALGHSPVRDDDE---------WKSLHAEIRKVHPNTPIQVIGGHSHIRD 270 (602)
T ss_pred HhccchHHHHhhc---cCccEEEEecccccccchh---------hhhHHHHHhhhCCCCceEEECchhhhhh
Confidence 3477887777776 5778899999999642211 1123333333 3 6777 9999999743
No 115
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=95.92 E-value=0.015 Score=54.17 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=38.7
Q ss_pred EEEEEecCCCCCCcHHHHHHHHH-c----CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcC--CCeEEcccCc
Q 018421 38 LESLVSDLGQTYNSLSTLEHYME-S----GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNH 110 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~~l~~~~~-~----~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNH 110 (356)
++.++||+|+..... .++.+ . ..+-.|++||+++.+.. +. +. ..++-.+... -.++.+.|||
T Consensus 52 ~~~vvGDiHG~~~dL---~~il~~~g~~~~~~~~lFLGDyVDRG~~-s~------Ev-l~ll~~lk~~~p~~v~llRGNH 120 (321)
T cd07420 52 QVTICGDLHGKLDDL---FLIFYKNGLPSPENPYVFNGDFVDRGKR-SI------EI-LIILFAFFLVYPNEVHLNRGNH 120 (321)
T ss_pred CeEEEEeCCCCHHHH---HHHHHHcCCCCccceEEEeccccCCCCC-cH------HH-HHHHHHHhhcCCCcEEEecCch
Confidence 678999999865432 22222 2 22579999999975332 11 22 2222222222 3488899999
Q ss_pred ccc
Q 018421 111 EIE 113 (356)
Q Consensus 111 D~~ 113 (356)
|..
T Consensus 121 E~~ 123 (321)
T cd07420 121 EDH 123 (321)
T ss_pred hhh
Confidence 985
No 116
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=95.67 E-value=0.022 Score=52.84 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=39.4
Q ss_pred eEEEEEecCCCCCCcHH-HHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCC--CeEEcccCcccc
Q 018421 37 SLESLVSDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ--PWIWSAGNHEIE 113 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~~-~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~v~GNHD~~ 113 (356)
-+++++||+|....... .++.......+-++++||+++.+ ..+. +.+ ..+-.+.... -++.+.||||..
T Consensus 43 ~~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVDRG-~~s~------Evi-~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 43 APVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVDRG-YFSI------ECV-LYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccCCC-CChH------HHH-HHHHHHHhhcCCCEEEEeCCCcHH
Confidence 45789999997654322 22211111447899999999653 2110 222 2222222223 588999999974
No 117
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=95.66 E-value=0.44 Score=42.78 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=44.4
Q ss_pred HHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeee
Q 018421 170 QWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 239 (356)
Q Consensus 170 Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 239 (356)
+.+.+.+++++++ .+.+++||++|.-.--. ... ...++.+...+.+.++|+|+.+|.|..|-..
T Consensus 169 ~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~----~~p-~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E 232 (250)
T PF09587_consen 169 GIERIKEDIREAR-KKADVVIVSLHWGIEYE----NYP-TPEQRELARALIDAGADIIIGHHPHVIQPVE 232 (250)
T ss_pred hHHHHHHHHHHHh-cCCCEEEEEeccCCCCC----CCC-CHHHHHHHHHHHHcCCCEEEeCCCCcccceE
Confidence 4577888888875 57889999999853211 111 2233455555666899999999999988765
No 118
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=95.64 E-value=0.012 Score=52.55 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=93.9
Q ss_pred EEEEcCccccCCCCCcccc--chhHHHHHHHHHH----hhcCCCeEEcccCccccccccCCcc-----cccccccc----
Q 018421 65 TVLFLGDLSYADRYQFIDV--GVRWDSWGRFVER----SAAYQPWIWSAGNHEIEYMTYMGEV-----VPFKSYLH---- 129 (356)
Q Consensus 65 ~vl~~GD~vy~~~~~~~~~--~~~~~~~~~~~~~----~~~~~P~~~v~GNHD~~~~~~~~~~-----~~~~~~~~---- 129 (356)
-++..||++.+.+....+. ..+...|...++. ....+|+|.-+||||..-.. .... .+.+.|.+
T Consensus 129 GlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~g-pph~~DWyRrElrdyve~~Hr 207 (392)
T COG5555 129 GLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKG-PPHSLDWYRRELRDYVENYHR 207 (392)
T ss_pred eEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccC-CCCchhHHHHHHHHHHHhhcC
Confidence 3677889998776654331 2233333322221 22347999999999985210 0000 00111111
Q ss_pred --cccCCcCCCC--CCCCceEEEEeCCEEEEEEcCCCCC-CC-ChHHHHHHHHHHccccCCCCCeEEEEEecccccC--C
Q 018421 130 --RYPTPHLASK--SSSPLWYAIRRASAHIIVLSSYSPF-VK-YTPQWEWLREELKKVDREKTPWLIVLMHVPIYNS--N 201 (356)
Q Consensus 130 --~~~~P~~~~~--~~~~~~ys~~~g~~~fi~lds~~~~-~~-~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~--~ 201 (356)
.|.-|...+. ......||+++|+++++-+-+...- +. -..-+-||+..|..... ..+.++++-|.-.-+. .
T Consensus 208 ~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~aa-dgrpv~LfqhyGwdtfste 286 (392)
T COG5555 208 SDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSAA-DGRPVYLFQHYGWDTFSTE 286 (392)
T ss_pred cCcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceeccceeecc-CCCceeehhhhCccceecc
Confidence 1111211111 1223468999999998877553211 11 12346799999987543 3345788888864322 1
Q ss_pred CCcc--------c------ccHHHHHHHHHHHHhcCccEEEecccccee
Q 018421 202 EAHF--------M------EGESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 202 ~~~~--------~------~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
.++. . ....-+..|...++-|+|.-.+.||.|...
T Consensus 287 awdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~ 335 (392)
T COG5555 287 AWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFN 335 (392)
T ss_pred ccCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccc
Confidence 1110 0 012346788888899999999999999863
No 119
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=95.54 E-value=0.022 Score=51.87 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=40.3
Q ss_pred eEEEEEecCCCCCCcHH-HHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc--CCCeEEcccCcccc
Q 018421 37 SLESLVSDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA--YQPWIWSAGNHEIE 113 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~~-~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~v~GNHD~~ 113 (356)
-+++++||+|....... .++.+.....+-++++||+++.+ ..+ .+...++..+.. ...++.+.||||..
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG-~~s-------~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRG-PFS-------IEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCC-CCh-------HHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 45789999997643322 22222223567899999999643 211 112222222222 23589999999984
No 120
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=95.21 E-value=0.067 Score=52.04 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=32.2
Q ss_pred cCeEEEEEecCCCCCC---------cHHHHHHHH---H-cCCcEEEEcCccccCCCC
Q 018421 35 LTSLESLVSDLGQTYN---------SLSTLEHYM---E-SGAQTVLFLGDLSYADRY 78 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~---------~~~~l~~~~---~-~~~d~vl~~GD~vy~~~~ 78 (356)
+.+||++..|.|.++. +..+++.++ + ++.|+||..||++-.+..
T Consensus 12 ntirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkP 68 (646)
T KOG2310|consen 12 NTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKP 68 (646)
T ss_pred cceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCc
Confidence 5799999999998752 334444443 3 499999999999976543
No 121
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=95.13 E-value=0.037 Score=50.74 Aligned_cols=68 Identities=18% Similarity=0.106 Sum_probs=38.8
Q ss_pred EEEEEecCCCCCCcHH-HHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc--CCCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA--YQPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~-~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~v~GNHD~~ 113 (356)
.+.++||+|....... .+........+-+|++||+++. |..+ -+...++..+.. ...++.+.||||..
T Consensus 43 ~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVDR-G~~s-------~evl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDR-GYYS-------VETFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECCC-CcCH-------HHHHHHHHHHhhcCCCcEEEEecccchH
Confidence 4789999997644332 2221111244678999999965 3211 112222222322 23589999999974
No 122
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=95.10 E-value=0.044 Score=52.00 Aligned_cols=69 Identities=16% Similarity=0.037 Sum_probs=38.5
Q ss_pred eEEEEEecCCCCCCcHH-HHHHHHHcCC-cEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcC--CCeEEcccCccc
Q 018421 37 SLESLVSDLGQTYNSLS-TLEHYMESGA-QTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEI 112 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~~-~l~~~~~~~~-d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~ 112 (356)
-++.++||+|....... .++...-... +.+|++||+++. |..+. + ...++-.+.-. .-++.+.||||.
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDR-Gp~Sl------E-vl~lL~~lki~~p~~v~lLRGNHE~ 137 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDR-GAWGL------E-TFLLLLSWKVLLPDRVYLLRGNHES 137 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCC-CCChH------H-HHHHHHHHhhccCCeEEEEeeeccc
Confidence 45899999997644322 2221111122 359999999964 32211 2 22222222222 358899999998
Q ss_pred c
Q 018421 113 E 113 (356)
Q Consensus 113 ~ 113 (356)
.
T Consensus 138 ~ 138 (377)
T cd07418 138 K 138 (377)
T ss_pred c
Confidence 5
No 123
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=95.09 E-value=0.032 Score=51.36 Aligned_cols=69 Identities=20% Similarity=0.201 Sum_probs=39.1
Q ss_pred eEEEEEecCCCCCCcHH-HHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcC--CCeEEcccCcccc
Q 018421 37 SLESLVSDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEIE 113 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~~-~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~~ 113 (356)
-.++++||+|....... .++.......+-+|++||+++.+ .... +.+ ..+..+.-. ..++.+.||||..
T Consensus 50 ~~i~viGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG-~~s~------e~i-~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 50 APLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRG-KQSL------ETI-CLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred CceEEEEecCCCHHHHHHHHHhcCCCCcceEEEEeeEecCC-CCcH------HHH-HHHHHhhhhCCCcEEEEecccchh
Confidence 35789999997644332 22222112456789999999653 2211 222 222222222 2488999999985
No 124
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=94.95 E-value=0.037 Score=51.19 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCCcHH-HHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCC--CeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ--PWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~-~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~v~GNHD~~ 113 (356)
.++++||+|....... .+..+.....+-++++||+++.+.. . -+....+-.+.... -++.+.||||..
T Consensus 44 ~i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~-s-------~evl~ll~~lk~~~p~~v~llrGNHE~~ 114 (303)
T PTZ00239 44 PVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDRGYN-S-------VETMEYLLCLKVKYPGNITLLRGNHESR 114 (303)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcCCCCC-H-------HHHHHHHHHhhhcCCCcEEEEecccchH
Confidence 3789999997644332 2222111245679999999975321 1 11122222222222 488999999974
No 125
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=94.45 E-value=0.074 Score=49.48 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=38.5
Q ss_pred eEEEEEecCCCCCCcHH-HHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcC--CCeEEcccCcccc
Q 018421 37 SLESLVSDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEIE 113 (356)
Q Consensus 37 ~~f~v~gD~g~~~~~~~-~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~~ 113 (356)
-.++++||+|....... .+........+-.|++||+++.+.. . .+.+ ..+-.+.-. -.++.+.||||..
T Consensus 59 ~~i~vvGDIHG~~~dL~~l~~~~g~~~~~~ylfLGDyVDRG~~-s------~evl-~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 59 APLKICGDVHGQYFDLLRLFEYGGYPPESNYLFLGDYVDRGKQ-S------LETI-CLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CCeEEEeecccCHHHHHHHHHhcCCCCcceEEEeceecCCCCC-c------HHHH-HHHHHhcccCCCceEEEecccchh
Confidence 35789999997543322 2221111244578899999975321 1 0222 222222222 3589999999984
No 126
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=94.40 E-value=0.068 Score=49.74 Aligned_cols=23 Identities=4% Similarity=0.150 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCccEEEeccccc
Q 018421 212 RAAFESWFVRYKVDVVFAGHVHA 234 (356)
Q Consensus 212 ~~~l~~l~~~~~v~lvlsGH~H~ 234 (356)
.+.+...+++.+.++++-||.=.
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He~~ 255 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHEVK 255 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCccc
Confidence 46778889999999999999954
No 127
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=94.34 E-value=0.09 Score=48.92 Aligned_cols=21 Identities=5% Similarity=0.226 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCccEEEeccc
Q 018421 212 RAAFESWFVRYKVDVVFAGHV 232 (356)
Q Consensus 212 ~~~l~~l~~~~~v~lvlsGH~ 232 (356)
.+.+...+++.+.++++=||+
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 467888899999999999998
No 128
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=94.25 E-value=1.3 Score=39.81 Aligned_cols=66 Identities=18% Similarity=0.117 Sum_probs=40.7
Q ss_pred cCeEEEEEecCCCCCCcHHHHHHHHHc-CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc--CCCeEEcccCcc
Q 018421 35 LTSLESLVSDLGQTYNSLSTLEHYMES-GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA--YQPWIWSAGNHE 111 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~~~~~l~~~~~~-~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~v~GNHD 111 (356)
.-.+|+.++|.|.-.... ... .-|+.+++||.+.- +. .+| ..++-+.+.+ ..-=++|.||||
T Consensus 60 ~~~r~VcisdtH~~~~~i------~~~p~gDvlihagdfT~~-g~------~~e--v~~fn~~~gslph~yKIVIaGNHE 124 (305)
T KOG3947|consen 60 GYARFVCISDTHELTFDI------NDIPDGDVLIHAGDFTNL-GL------PEE--VIKFNEWLGSLPHEYKIVIAGNHE 124 (305)
T ss_pred CceEEEEecCcccccCcc------ccCCCCceEEeccCCccc-cC------HHH--HHhhhHHhccCcceeeEEEeeccc
Confidence 568999999999754432 222 66899999999852 21 222 2222222222 123467999999
Q ss_pred cccc
Q 018421 112 IEYM 115 (356)
Q Consensus 112 ~~~~ 115 (356)
..++
T Consensus 125 LtFd 128 (305)
T KOG3947|consen 125 LTFD 128 (305)
T ss_pred eeec
Confidence 9754
No 129
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=94.17 E-value=0.056 Score=49.78 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=37.5
Q ss_pred EEEEecCCCCCCcHH-HHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHH-HhhcCCCeEEcccCcccc
Q 018421 39 ESLVSDLGQTYNSLS-TLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVE-RSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 39 f~v~gD~g~~~~~~~-~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~~~v~GNHD~~ 113 (356)
+.++||+|+...... .++.+.....+-++++||+++.+.. + .+.+...+. .+.....++.+.||||..
T Consensus 54 ~~ViGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDRG~~-s------~evl~ll~~lk~~~p~~v~llrGNHE~~ 123 (294)
T PTZ00244 54 VRVCGDTHGQYYDLLRIFEKCGFPPYSNYLFLGDYVDRGKH-S------VETITLQFCYKIVYPENFFLLRGNHECA 123 (294)
T ss_pred ceeeccCCCCHHHHHHHHHHcCCCCcccEEEeeeEecCCCC-H------HHHHHHHHHHhhccCCeEEEEecccchH
Confidence 679999997654332 2222222234468899999965321 1 021211111 111234689999999974
No 130
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=88.34 E-value=0.64 Score=40.39 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=39.8
Q ss_pred EEEEecCCCCCC--cHHHHHHHHH-----cCCcEEEEcCccccCCCCCcc------ccchhHHH---HHHHHHHhhcCCC
Q 018421 39 ESLVSDLGQTYN--SLSTLEHYME-----SGAQTVLFLGDLSYADRYQFI------DVGVRWDS---WGRFVERSAAYQP 102 (356)
Q Consensus 39 f~v~gD~g~~~~--~~~~l~~~~~-----~~~d~vl~~GD~vy~~~~~~~------~~~~~~~~---~~~~~~~~~~~~P 102 (356)
|++++|...+.+ .-+.+..+.+ .+|+.+|++|+.+........ ......+. +.+.++.+...++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 578888877643 3345555543 379999999999975332210 00111111 1122233345679
Q ss_pred eEEcccCccccc
Q 018421 103 WIWSAGNHEIEY 114 (356)
Q Consensus 103 ~~~v~GNHD~~~ 114 (356)
++.+||+||...
T Consensus 81 vvlvPg~~D~~~ 92 (209)
T PF04042_consen 81 VVLVPGPNDPTS 92 (209)
T ss_dssp EEEE--TTCTT-
T ss_pred EEEeCCCccccc
Confidence 999999999853
No 131
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=81.36 E-value=2 Score=40.27 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=38.4
Q ss_pred EEEEEecCCCCCCcHH-HHHHHHHcCCc-EEEEcCccccCCCCCccccchhHHHHHHHHHHhhc--CCCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNSLS-TLEHYMESGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA--YQPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~-~l~~~~~~~~d-~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~v~GNHD~~ 113 (356)
-+.++||+|......- .+.......|+ -.+++||+++.+..+- +... ++-.+.. .--++...||||..
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~sl-------E~i~-LL~a~Ki~yp~~~~lLRGNHE~~ 131 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSL-------ETIC-LLFALKIKYPENVFLLRGNHECA 131 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCCCCcccEEEecccccCCccce-------EEee-hhhhhhhhCCceEEEeccccccc
Confidence 4679999998654322 22211112365 4899999997543211 1111 1111222 24699999999985
No 132
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=80.49 E-value=2.3 Score=37.90 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=38.7
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHcCCcE-EEEcCccccCCCCCccccchhHHHHHHHHHHhhcC--CCeEEcccCcccc
Q 018421 38 LESLVSDLGQTYNSLSTLEHYMESGAQT-VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEIE 113 (356)
Q Consensus 38 ~f~v~gD~g~~~~~~~~l~~~~~~~~d~-vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~~ 113 (356)
-+.+.||.|......-.+-++--..||. .++.||.+.. |..+ .+....+-.++-. -.+-.++||||..
T Consensus 61 pvtvcGDvHGqf~dl~ELfkiGG~~pdtnylfmGDyvdr-Gy~S-------vetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 61 PVTVCGDVHGQFHDLIELFKIGGLAPDTNYLFMGDYVDR-GYYS-------VETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred ceEEecCcchhHHHHHHHHHccCCCCCcceeeeeeeccc-ccch-------HHHHHHHHHhhccccceeEEecCchHHH
Confidence 3579999987543321111222336765 7889999964 3321 2222333333322 3577899999985
No 133
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=79.11 E-value=3 Score=36.93 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=36.7
Q ss_pred EEEEecCCCCCCcHHHHHHHHHcCCc-EEEEcCccccCCCCCccccchhHHHHHHHHHHhhcC--CCeEEcccCcccc
Q 018421 39 ESLVSDLGQTYNSLSTLEHYMESGAQ-TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY--QPWIWSAGNHEIE 113 (356)
Q Consensus 39 f~v~gD~g~~~~~~~~l~~~~~~~~d-~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~v~GNHD~~ 113 (356)
+.++||+|..-...-.+=++.-.-|. =-|++||.|+. |..+ -+.|.-+ -.++.. ..+..+.||||..
T Consensus 45 vtvcGDIHGQf~Dllelf~igG~~~~t~YLFLGDyVDR-G~~S------vEt~lLL-l~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 45 VTVCGDIHGQFYDLLELFRIGGDVPETNYLFLGDYVDR-GYYS------VETFLLL-LALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred cEEeecccchHHHHHHHHHhCCCCCCCceEeecchhcc-ccch------HHHHHHH-HHHhhcCcceeEEeeccchhh
Confidence 45999998753322111122222232 37889999975 3321 1333322 223333 4588899999985
No 134
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=71.35 E-value=4.3 Score=33.89 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=23.1
Q ss_pred eEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeee
Q 018421 188 WLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERS 238 (356)
Q Consensus 188 ~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~ 238 (356)
..|+++|.|...... ..+.+++++||+|.....
T Consensus 108 ~~i~l~H~~~~~~~~------------------~~~~d~vi~GHtH~~~~~ 140 (168)
T cd07390 108 RRVYLSHYPILEWNG------------------LDRGSWNLHGHIHSNSPD 140 (168)
T ss_pred EEEEEEeCCcccCCC------------------CCCCeEEEEeeeCCCCCC
Confidence 689999977532110 246789999999996654
No 135
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=71.21 E-value=6.7 Score=34.17 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=37.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHHc---CCcE-EEEcCccccCCCCCccccchhHHHHHHHHHHhhcCC--CeEEcccCccc
Q 018421 39 ESLVSDLGQTYNSLSTLEHYMES---GAQT-VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQ--PWIWSAGNHEI 112 (356)
Q Consensus 39 f~v~gD~g~~~~~~~~l~~~~~~---~~d~-vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~v~GNHD~ 112 (356)
+.+.||+|..-.. +-++-+. -||- -|+.||.++.+-.+ .+.|.-+ --+..+. .+-.+.||||.
T Consensus 48 VTvCGDIHGQFyD---L~eLFrtgG~vP~tnYiFmGDfVDRGyyS-------LEtfT~l-~~LkaryP~~ITLlRGNHEs 116 (306)
T KOG0373|consen 48 VTVCGDIHGQFYD---LLELFRTGGQVPDTNYIFMGDFVDRGYYS-------LETFTLL-LLLKARYPAKITLLRGNHES 116 (306)
T ss_pred eeEeeccchhHHH---HHHHHHhcCCCCCcceEEecccccccccc-------HHHHHHH-HHHhhcCCceeEEeeccchh
Confidence 4599999865322 2233332 4554 67899999753221 1333333 2333443 47788999998
Q ss_pred c
Q 018421 113 E 113 (356)
Q Consensus 113 ~ 113 (356)
.
T Consensus 117 R 117 (306)
T KOG0373|consen 117 R 117 (306)
T ss_pred h
Confidence 5
No 136
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=70.02 E-value=18 Score=33.10 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=44.2
Q ss_pred cCeEEEEEecCCCCCCcHHHHHHHH---Hc---------CCcEEEEcCccccCC---CCCccc-cchhHHHHHH-HHH--
Q 018421 35 LTSLESLVSDLGQTYNSLSTLEHYM---ES---------GAQTVLFLGDLSYAD---RYQFID-VGVRWDSWGR-FVE-- 95 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~~~~~l~~~~---~~---------~~d~vl~~GD~vy~~---~~~~~~-~~~~~~~~~~-~~~-- 95 (356)
...+|+++||.... +.++++++. +. .|-.+|+.|+.+... +..... +....+.+.. .+.
T Consensus 26 ~~~~~VilSDV~LD--~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~f 103 (291)
T PTZ00235 26 KRHNWIIMHDVYLD--SPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKF 103 (291)
T ss_pred CceEEEEEEeeccC--CHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhC
Confidence 46889999998864 334443333 21 288999999998542 100100 1122233322 121
Q ss_pred -HhhcCCCeEEcccCcccc
Q 018421 96 -RSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 96 -~~~~~~P~~~v~GNHD~~ 113 (356)
.+....-+++|||-.|-+
T Consensus 104 p~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 104 KLILEHCYLIFIPGINDPC 122 (291)
T ss_pred hHHHhcCeEEEECCCCCCC
Confidence 233457899999999974
No 137
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=52.39 E-value=18 Score=33.93 Aligned_cols=66 Identities=21% Similarity=0.267 Sum_probs=35.2
Q ss_pred EEEEecCCCCCCcHHHHHHHHHc--CCc--EEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 39 ESLVSDLGQTYNSLSTLEHYMES--GAQ--TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 39 f~v~gD~g~~~~~~~~l~~~~~~--~~d--~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
+.|.||+|...... + ++-+- .|. --+++||.|+. |..+.+ . -.+...++- .-...++...||||-.
T Consensus 90 iTVCGDIHGQf~DL--m-KLFEVGG~PA~t~YLFLGDYVDR-GyFSiE--C--vlYLwsLKi-~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 90 ITVCGDIHGQFFDL--M-KLFEVGGSPANTRYLFLGDYVDR-GYFSIE--C--VLYLWSLKI-NYPKTLFLLRGNHECR 159 (517)
T ss_pred eeEecccchHHHHH--H-HHHHccCCcccceeEeecccccc-ceeeee--h--HHHHHHHhc-CCCCeEEEecCCcchh
Confidence 56999998754322 1 12121 332 36899999975 332211 1 112222221 1124578899999974
No 138
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.71 E-value=32 Score=33.46 Aligned_cols=68 Identities=9% Similarity=0.138 Sum_probs=39.9
Q ss_pred cCeEEEEEecCCCCCC-cHHHHHHHHHc--CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-CCCeEEcccCc
Q 018421 35 LTSLESLVSDLGQTYN-SLSTLEHYMES--GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNH 110 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~-~~~~l~~~~~~--~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNH 110 (356)
.+.+|+++||.-..-+ -.+.++.+.+. ..|+++++|+..-.+ .. . +.|.+....... .+|+|+.-+|-
T Consensus 4 ~~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~-~~----~---~e~~~ykng~~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 4 ADAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHD-TQ----N---AEVEKYKNGTKKVPIPTYFLGDNA 75 (528)
T ss_pred CCceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCc-cc----h---hHHHHHhcCCccCceeEEEecCCC
Confidence 3578999999754322 12344445444 689999999998431 11 2 334444433222 46888776665
No 139
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=47.34 E-value=57 Score=31.15 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=40.6
Q ss_pred HHHHHHHHccccCCCCCeEEEEEecc-cccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccceeeee
Q 018421 171 WEWLREELKKVDREKTPWLIVLMHVP-IYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYERSY 239 (356)
Q Consensus 171 ~~wL~~~L~~~~~~~~~~~Iv~~H~P-~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~r~~ 239 (356)
.+-+..++..++ +..+.+|+++|+- -|.... ...+.++..-+...++++++.+|-|..|-+.
T Consensus 210 ~~~~~~~v~~a~-k~adlviv~~HwG~ey~~~p------~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE 272 (372)
T COG2843 210 LERVLAAVLAAK-KGADLVIVQPHWGVEYAYEP------AAGQRALARRLIDAGADIIVGHHPHVLQPIE 272 (372)
T ss_pred hhhhHHHHHhhh-ccCCEEEEeccccccccCCC------cHHHHHHHHHHHhcCcCeEecCCCCcCcceE
Confidence 344444555443 4677899999983 333221 1224556666666899999999999988765
No 140
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=43.63 E-value=22 Score=37.17 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.5
Q ss_pred CCCCCCCCEEEEEEEE--------Eecceeeeecch
Q 018421 2 ALSMIPSTITRLGVAI--------LLENFGFKRLQR 29 (356)
Q Consensus 2 ~~gL~p~t~Y~y~v~~--------~s~~~~f~t~~~ 29 (356)
.+||+|||.|.++|.. .|....|.|++.
T Consensus 502 i~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 502 ITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred eeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 3799999999999983 788888998887
No 141
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=39.23 E-value=29 Score=29.94 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=11.6
Q ss_pred CccEEEecccccee
Q 018421 223 KVDVVFAGHVHAYE 236 (356)
Q Consensus 223 ~v~lvlsGH~H~y~ 236 (356)
+.+++++||+|...
T Consensus 168 ~~~~iV~GHTh~~~ 181 (207)
T cd07424 168 GVDAVVHGHTPVKR 181 (207)
T ss_pred CCCEEEECCCCCCc
Confidence 46899999999854
No 142
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=38.62 E-value=24 Score=24.42 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=13.3
Q ss_pred CCCCCCCEEEEEEEE
Q 018421 3 LSMIPSTITRLGVAI 17 (356)
Q Consensus 3 ~gL~p~t~Y~y~v~~ 17 (356)
.+|.|++.|.++|..
T Consensus 62 ~~l~p~~~Y~~~v~a 76 (93)
T cd00063 62 TGLKPGTEYEFRVRA 76 (93)
T ss_pred ccccCCCEEEEEEEE
Confidence 579999999999975
No 143
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=38.33 E-value=25 Score=35.58 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=26.8
Q ss_pred CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCcccc
Q 018421 62 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEIE 113 (356)
Q Consensus 62 ~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~~ 113 (356)
-.|-+-++||+.+.+..+ +. .++.+...--+=..+||||.-
T Consensus 184 ~VDhLHIvGDIyDRGp~p--------d~---ImD~Lm~~hsvDIQWGNHDIl 224 (640)
T PF06874_consen 184 AVDHLHIVGDIYDRGPRP--------DK---IMDRLMNYHSVDIQWGNHDIL 224 (640)
T ss_pred hhhheeecccccCCCCCh--------hH---HHHHHhcCCCccccccchHHH
Confidence 789999999997543321 32 344443444455689999984
No 144
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.75 E-value=2e+02 Score=23.97 Aligned_cols=61 Identities=21% Similarity=0.220 Sum_probs=37.0
Q ss_pred CEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEec
Q 018421 152 SAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAG 230 (356)
Q Consensus 152 ~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsG 230 (356)
+.++++|-+ ..+..+-+.+.|++. -....|+..|+|++. ....+.+.+.+.+.++|+++.|
T Consensus 48 ~~~ifllG~------~~~~~~~~~~~l~~~---yP~l~ivg~~~g~f~---------~~~~~~i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 48 GKRIFLLGG------SEEVLEKAAANLRRR---YPGLRIVGYHHGYFD---------EEEEEAIINRINASGPDIVFVG 108 (172)
T ss_pred CCeEEEEeC------CHHHHHHHHHHHHHH---CCCeEEEEecCCCCC---------hhhHHHHHHHHHHcCCCEEEEE
Confidence 345666633 345556566666652 223456666666651 1223567778889999999887
No 145
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=36.17 E-value=29 Score=31.40 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=32.1
Q ss_pred HHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCcc-EEEeccccc
Q 018421 172 EWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVD-VVFAGHVHA 234 (356)
Q Consensus 172 ~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~-lvlsGH~H~ 234 (356)
+.|+..|..-++-..+ ++-.|.|- .++-+.+.++++++++| +||.||+-.
T Consensus 115 ~YL~~Cl~~Ykql~i~--a~G~~~~E-----------~eqp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 115 EYLRKCLKLYKKIGVP--VVGIHCKE-----------KEMPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred HHHHHHHHHHHHhCCc--eEEEEecc-----------hhchHHHHHHHHHhCCCEEEEeCchhh
Confidence 4578887765322222 33334331 23456889999999999 569999955
No 146
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=35.55 E-value=37 Score=30.92 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=32.9
Q ss_pred HHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCcc-EEEeccccce
Q 018421 172 EWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVD-VVFAGHVHAY 235 (356)
Q Consensus 172 ~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~-lvlsGH~H~y 235 (356)
+.|+..|+.-++-..+ ..-.|.| -.++-+.+.+++.++++| +||.||+-..
T Consensus 116 ~YL~~Cl~~Ykql~i~--a~G~~~~-----------E~eqp~~i~~Ll~~~~PDIlViTGHD~~~ 167 (287)
T PF05582_consen 116 EYLNKCLKVYKQLGIP--AVGIHVP-----------EKEQPEKIYRLLEEYRPDILVITGHDGYL 167 (287)
T ss_pred HHHHHHHHHHHHcCCc--eEEEEec-----------hHHhhHHHHHHHHHcCCCEEEEeCchhhh
Confidence 4578887764322222 3333333 134567889999999999 5699999753
No 147
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=34.45 E-value=27 Score=28.80 Aligned_cols=15 Identities=13% Similarity=0.140 Sum_probs=12.4
Q ss_pred CCCCCCCCEEEEEEE
Q 018421 2 ALSMIPSTITRLGVA 16 (356)
Q Consensus 2 ~~gL~p~t~Y~y~v~ 16 (356)
.++|+|||+|+.+..
T Consensus 106 VtNL~pGTkY~isY~ 120 (184)
T PF07353_consen 106 VTNLQPGTKYYISYL 120 (184)
T ss_pred eeccCCCcEEEEEEE
Confidence 479999999986655
No 148
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=34.17 E-value=49 Score=29.44 Aligned_cols=43 Identities=12% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEeccccc
Q 018421 190 IVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHA 234 (356)
Q Consensus 190 Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~ 234 (356)
++++|||++-.............+.+..++ ++++. +++-|+..
T Consensus 56 lIItHHP~~f~~~~~~~~~~~~~~~~~~li-~~~I~-vy~~Ht~l 98 (241)
T PF01784_consen 56 LIITHHPLFFKPLKSLTGDDYKGKIIEKLI-KNGIS-VYSAHTNL 98 (241)
T ss_dssp EEEESS-SSSSTSSHCHCHSHHHHHHHHHH-HTT-E-EEEESHHH
T ss_pred EEEEcCchhhcCCccccccchhhHHHHHHH-HCCCE-EEEecccc
Confidence 788999986533221111112233444444 46664 46777764
No 149
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=33.57 E-value=1.4e+02 Score=27.00 Aligned_cols=75 Identities=17% Similarity=0.084 Sum_probs=46.9
Q ss_pred cCeEEEEEecCCCCCCcHHHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccc
Q 018421 35 LTSLESLVSDLGQTYNSLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 112 (356)
Q Consensus 35 ~~~~f~v~gD~g~~~~~~~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 112 (356)
+..+|++.+|.+.. ...+.++.+.+.+|+.+++.|=.+|--+..-. ....+.-.+.++.+....+--.|..-|=.
T Consensus 175 g~~~i~faSDvqGp-~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~--~~~~E~~irNl~~ii~~~~~~lViDHHll 249 (304)
T COG2248 175 GKSSIVFASDVQGP-INDEALEFILEKRPDVLIIGGPPTYLLGYRVG--PKSLEKGIRNLERIIEETNATLVIDHHLL 249 (304)
T ss_pred CCeEEEEcccccCC-CccHHHHHHHhcCCCEEEecCCchhHhhhhcC--hHHHHHHHHHHHHHHHhCcceEEEeehhh
Confidence 56788888888654 45677888899999999999999965544211 01112223334444444444455655554
No 150
>PHA03008 hypothetical protein; Provisional
Probab=32.34 E-value=86 Score=26.93 Aligned_cols=43 Identities=7% Similarity=0.159 Sum_probs=28.2
Q ss_pred EEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEecccccee
Q 018421 189 LIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 189 ~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
=|+++|-||+.....+ -++..+.+++ .+-++.+.+.||.-.|.
T Consensus 163 DILITHgPP~GhLD~~-vGC~~Ll~~I----~rVKPKyHVFGh~~~~~ 205 (234)
T PHA03008 163 DILITASPPFAILDDD-LACGDLFSKV----IKIKPKFHIFNGLTQFS 205 (234)
T ss_pred CEEEeCCCCccccccc-cCcHHHHHHH----HHhCCcEEEeCCccccC
Confidence 3899999998765322 2334444443 35588999999966554
No 151
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=30.32 E-value=96 Score=27.62 Aligned_cols=47 Identities=19% Similarity=0.117 Sum_probs=26.0
Q ss_pred EEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCC-eEEcccCcccc
Q 018421 65 TVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQP-WIWSAGNHEIE 113 (356)
Q Consensus 65 ~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~~~v~GNHD~~ 113 (356)
=++++||.+...+..... ......+.+.++.+...-+ ...+|| |++.
T Consensus 120 ~~lftGDtl~~~g~g~~~-~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~~ 167 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLF-EGTPEQMYDSLQRLAALPDDTLVYCA-HEYT 167 (248)
T ss_pred CEEEEcCccccCCcCCCC-CCCHHHHHHHHHHHHcCCCCeEEECC-CCch
Confidence 489999998765432111 1122445555665544322 456788 9863
No 152
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=28.55 E-value=2.6e+02 Score=21.12 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCccEEEeccccc
Q 018421 212 RAAFESWFVRYKVDVVFAGHVHA 234 (356)
Q Consensus 212 ~~~l~~l~~~~~v~lvlsGH~H~ 234 (356)
.+.+.+..+++++|+++-|+.+.
T Consensus 74 ~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCC
Confidence 45777888899999998888754
No 153
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=28.10 E-value=2.2e+02 Score=23.73 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=36.7
Q ss_pred CEEEEEEcCCCCCCCChHHHHHHHHHHccccCCCCCeEEEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEec
Q 018421 152 SAHIIVLSSYSPFVKYTPQWEWLREELKKVDREKTPWLIVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAG 230 (356)
Q Consensus 152 ~~~fi~lds~~~~~~~~~Q~~wL~~~L~~~~~~~~~~~Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsG 230 (356)
+.++.+|-+ ..+..+-+.+.|++. -....|+.+|+|++.... ...+...+.+.++|+++.|
T Consensus 46 ~~~v~llG~------~~~~~~~~~~~l~~~---yp~l~i~g~~~g~~~~~~---------~~~i~~~I~~~~pdiv~vg 106 (171)
T cd06533 46 GLRVFLLGA------KPEVLEKAAERLRAR---YPGLKIVGYHHGYFGPEE---------EEEIIERINASGADILFVG 106 (171)
T ss_pred CCeEEEECC------CHHHHHHHHHHHHHH---CCCcEEEEecCCCCChhh---------HHHHHHHHHHcCCCEEEEE
Confidence 455666633 344555555566652 122456666888764321 1236777888999999887
No 154
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=26.76 E-value=1.1e+02 Score=23.17 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCcE-EEEcCccccC
Q 018421 53 STLEHYMESGAQT-VLFLGDLSYA 75 (356)
Q Consensus 53 ~~l~~~~~~~~d~-vl~~GD~vy~ 75 (356)
..++++.+.=|+. .|+.||....
T Consensus 53 ~~i~~i~~~fP~~kfiLIGDsgq~ 76 (100)
T PF09949_consen 53 DNIERILRDFPERKFILIGDSGQH 76 (100)
T ss_pred HHHHHHHHHCCCCcEEEEeeCCCc
Confidence 3456666665543 6777888644
No 155
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=26.01 E-value=2e+02 Score=25.33 Aligned_cols=50 Identities=18% Similarity=0.114 Sum_probs=34.6
Q ss_pred cHHHHHHHHHcCCcEEEEcCcc-ccCCCCCccccchhHHHHHHHHHHhhc-CCCeEEcccCccc
Q 018421 51 SLSTLEHYMESGAQTVLFLGDL-SYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEI 112 (356)
Q Consensus 51 ~~~~l~~~~~~~~d~vl~~GD~-vy~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~ 112 (356)
..+.++++.+...|+|+..|-. +.. +...+.++.+++ .+|++.-|||++-
T Consensus 16 ~~~~~~~~~~~gtdai~vGGS~~vt~------------~~~~~~v~~ik~~~lPvilfp~~~~~ 67 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIGGSQGVTY------------EKTDTLIEALRRYGLPIILFPSNPTN 67 (223)
T ss_pred cHHHHHHHHhcCCCEEEEcCCCcccH------------HHHHHHHHHHhccCCCEEEeCCCccc
Confidence 4456677777789999999966 321 234444444443 3899999999996
No 156
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=25.36 E-value=1.2e+02 Score=24.56 Aligned_cols=45 Identities=29% Similarity=0.446 Sum_probs=25.9
Q ss_pred cEEEEcCccccCCCCCcccc-----------chhHHHHHHHHHHhhcCCCeEEccc
Q 018421 64 QTVLFLGDLSYADRYQFIDV-----------GVRWDSWGRFVERSAAYQPWIWSAG 108 (356)
Q Consensus 64 d~vl~~GD~vy~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~P~~~v~G 108 (356)
.-++++||++.......... ...|..+.+.++.+...-|-+.++|
T Consensus 138 ~~vlftGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~g 193 (194)
T PF00753_consen 138 GKVLFTGDLLFSNEHPNPDPDLPLRGADVRYGSNWEESIEALRRLEALDPEVIIPG 193 (194)
T ss_dssp TTEEEEETTSCTTTSSSSSTSHTTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEES
T ss_pred CcEEEeeeEeccCCccccccccccccccccCcHHHHHHHHHHHHHHCCCCCEEEeC
Confidence 34888999987644433221 2345556666666655555555554
No 157
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.02 E-value=2.2e+02 Score=20.74 Aligned_cols=52 Identities=12% Similarity=0.044 Sum_probs=35.0
Q ss_pred cHHHHHHHHHcCCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhcCCCeEEcccCccc
Q 018421 51 SLSTLEHYMESGAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAYQPWIWSAGNHEI 112 (356)
Q Consensus 51 ~~~~l~~~~~~~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GNHD~ 112 (356)
..+.++.+.+..||++++--++...++ ..+.+.+.......|++++..++|.
T Consensus 32 ~~~~~~~~~~~~~d~iiid~~~~~~~~----------~~~~~~i~~~~~~~~ii~~t~~~~~ 83 (112)
T PF00072_consen 32 GEEALELLKKHPPDLIIIDLELPDGDG----------LELLEQIRQINPSIPIIVVTDEDDS 83 (112)
T ss_dssp HHHHHHHHHHSTESEEEEESSSSSSBH----------HHHHHHHHHHTTTSEEEEEESSTSH
T ss_pred HHHHHHHhcccCceEEEEEeeeccccc----------cccccccccccccccEEEecCCCCH
Confidence 456677777779999999877764221 2344444444456888888877774
No 158
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=22.52 E-value=91 Score=28.59 Aligned_cols=40 Identities=20% Similarity=0.416 Sum_probs=30.2
Q ss_pred CCcEEEEcCccccCCCCCccccchhHHHHHHHHHHhhc-CCCeEEcccCcccc
Q 018421 62 GAQTVLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAA-YQPWIWSAGNHEIE 113 (356)
Q Consensus 62 ~~d~vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~v~GNHD~~ 113 (356)
++|+|+++|-+.|. +.|...++.... -.|++..||--|..
T Consensus 296 ~vDaIvLTGGiA~~------------~~f~~~I~~~v~~iapv~v~PGE~Ele 336 (358)
T COG3426 296 KVDAIVLTGGIAYE------------KLFVDAIEDRVSWIAPVIVYPGEDELE 336 (358)
T ss_pred CCCEEEEecchhhH------------HHHHHHHHHHHhhhcceEecCCchHHH
Confidence 89999999999863 555555544333 36999999999984
No 159
>PRK10799 metal-binding protein; Provisional
Probab=22.04 E-value=1.6e+02 Score=26.27 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=22.6
Q ss_pred EEEEecccccCCCCcccccHHHHHHHHHHHHhcCccEEEecccccee
Q 018421 190 IVLMHVPIYNSNEAHFMEGESMRAAFESWFVRYKVDVVFAGHVHAYE 236 (356)
Q Consensus 190 Iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~v~lvlsGH~H~y~ 236 (356)
++++|||++-....... ..........+.+.++. +++-|++.-.
T Consensus 59 lIitHHP~~~~~~~~~~--~~~~~~~~~~li~~~i~-vy~~Htn~D~ 102 (247)
T PRK10799 59 AVIVHHGYFWKGESPVI--RGMKRNRLKTLLANDIN-LYGWHLPLDA 102 (247)
T ss_pred EEEECCchhccCCCccc--cchHHHHHHHHHHCCCe-EEEEecchhh
Confidence 66799998633221111 11222333344456654 4688887643
No 160
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=21.84 E-value=77 Score=27.67 Aligned_cols=14 Identities=21% Similarity=0.187 Sum_probs=11.7
Q ss_pred cCccEEEeccccce
Q 018421 222 YKVDVVFAGHVHAY 235 (356)
Q Consensus 222 ~~v~lvlsGH~H~y 235 (356)
.+++++++||+|.-
T Consensus 178 ~~~~~vv~GHTh~~ 191 (218)
T PRK09968 178 NGADYFIFGHMMFD 191 (218)
T ss_pred CCCCEEEECCCCcC
Confidence 46789999999973
No 161
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=20.23 E-value=1.7e+02 Score=25.57 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=17.1
Q ss_pred EEEEEEcCCCCCCCChHHHHHHHHHHcc
Q 018421 153 AHIIVLSSYSPFVKYTPQWEWLREELKK 180 (356)
Q Consensus 153 ~~fi~lds~~~~~~~~~Q~~wL~~~L~~ 180 (356)
-.++++|. ....|++|+++.+..
T Consensus 121 ~~LvfiDg-----dD~~Qv~wak~~~~~ 143 (209)
T PRK13738 121 QTLYFING-----DDPAQVAWMKRQTPP 143 (209)
T ss_pred ceEEEEeC-----CCHHHHHHHHHhhhc
Confidence 35667763 567899999998765
No 162
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=20.09 E-value=1.8e+02 Score=25.95 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=25.3
Q ss_pred EEEcCccccCCCCCccccchhHHHHHHHHHHhhcC-CCeEEcccCcccc
Q 018421 66 VLFLGDLSYADRYQFIDVGVRWDSWGRFVERSAAY-QPWIWSAGNHEIE 113 (356)
Q Consensus 66 vl~~GD~vy~~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~v~GNHD~~ 113 (356)
++++||.+...+..... ....+.+.+.++.+... ...+..+| ||+.
T Consensus 122 ~lFtGDtlf~~g~gr~f-~g~~~~~~~Sl~kl~~l~~~t~i~pg-H~y~ 168 (251)
T PRK10241 122 YLFCGDTLFSGGCGRLF-EGTASQMYQSLKKINALPDDTLICCA-HEYT 168 (251)
T ss_pred cEEEcCeeccCCcCCCC-CCCHHHHHHHHHHHHcCCCCEEEECC-CCCh
Confidence 69999988765432111 12224455555555432 23455677 9974
Done!