BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018422
         (356 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 121/329 (36%), Gaps = 64/329 (19%)

Query: 22  TYPLQTVNTRQQTERIAKKGLPNCPAAASSSTLRQILEVIKTEGWGGLYSGLKPSLVGTA 81
           T+PL T   R Q +  ++  +    +A     L  IL +++TEG   LY+GL   L    
Sbjct: 19  TFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQM 78

Query: 82  ASQGIYYYFYQLFKNKAEAFVVAREARGRGDGSVGMFSWLIVAALAGSLNVLLTNPIWVL 141
           +   +    Y   K          +   +G    G+ S L+  +  G+L V +  P  V+
Sbjct: 79  SFASVRIGLYDSVK----------QFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVV 128

Query: 142 VTRMQTHTQAERKIMEGKREALVKEALESSTGSTLQDKLAELDLIKPRPYGTFPAAREVY 201
             R Q   +A      G R                            R   T  A + + 
Sbjct: 129 KVRFQAQARA-----GGGR----------------------------RYQSTVEAYKTIA 155

Query: 202 NETGVAGFWKGIIPTL----IMVCNPSIQFMIYEGSLKHLRSKRAANKHGLKNVSALEVF 257
            E G+ G WKG  P +    I+ C   + + + + +L  L++    +       SA    
Sbjct: 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL--LKANLMTDDLPCHFTSAFG-- 211

Query: 258 LLGALAKLGATVSTYPLLVVKSRLQAKQEIGRNISL-RYSGTLDAIIKMIHYEGLPGFYK 316
                A    TV   P+ VVK+R         N +L +Y       + M+  EG   FYK
Sbjct: 212 -----AGFCTTVIASPVDVVKTRYM-------NSALGQYHSAGHCALTMLRKEGPRAFYK 259

Query: 317 GMSTKIVQSVFAASILFMVKEELVKAYMA 345
           G     ++      ++F+  E+L +A MA
Sbjct: 260 GFMPSFLRLGSWNVVMFVTYEQLKRALMA 288



 Score = 33.5 bits (75), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 257 FLLGALAKLGATVSTYPLLVVKSRLQAKQE----IGRNISLRYSGTLDAIIKMIHYEGLP 312
           FL    A   A + T+PL   K RLQ + E    +    S +Y G L  I+ M+  EG  
Sbjct: 5   FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64

Query: 313 GFYKGMSTKIVQSVFAASILFMVKEELVKAY 343
             Y G+   + + +  AS+   + + + + Y
Sbjct: 65  SLYNGLVAGLQRQMSFASVRIGLYDSVKQFY 95


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 36.6 bits (83), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 10/140 (7%)

Query: 199 EVYNETGVAGFWKGIIPTLIMVCNPSIQ-FMIYEGSLKHLRSKRAANKHGLKNVSALEVF 257
           +++   G+ G ++G         N S+Q  +IY  +   +           KNV  +  +
Sbjct: 162 KIFKSDGLRGLYQGF--------NVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSW 213

Query: 258 LLGALAKLGATVSTYPLLVVKSRLQAKQEIGRNISLRYSGTLDAIIKMIHYEGLPGFYKG 317
           ++       A + +YP   V+ R+   Q   +   + Y+GT+D   K+   EG   F+KG
Sbjct: 214 MIAQTVTAVAGLVSYPFDTVRRRMMM-QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272

Query: 318 MSTKIVQSVFAASILFMVKE 337
             + +++ +  A +L +  E
Sbjct: 273 AWSNVLRGMGGAFVLVLYDE 292



 Score = 35.0 bits (79), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 14/126 (11%)

Query: 203 ETGVAGFWKGIIPTLIMVCNPSIQFMIYEGSLKHLRSKRAANKHGLKNVSALEVFLLGAL 262
           E G   FW+G +  +I           ++   K +         G+        +  G L
Sbjct: 63  EQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFL------GGVDRHKQFWRYFAGNL 116

Query: 263 AKLGATVST-----YPLLVVKSRLQAKQEIGRNISLR-YSGTLDAIIKMIHYEGLPGFYK 316
           A  GA  +T     YPL   ++RL A  ++G+  + R ++G  + I K+   +GL G Y+
Sbjct: 117 ASGGAAGATSLCFVYPLDFARTRLAA--DVGKGAAQREFTGLGNCITKIFKSDGLRGLYQ 174

Query: 317 GMSTKI 322
           G +  +
Sbjct: 175 GFNVSV 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,704,378
Number of Sequences: 62578
Number of extensions: 330550
Number of successful extensions: 822
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 10
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)