Query 018422
Match_columns 356
No_of_seqs 144 out of 1659
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 15:00:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018422.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018422hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 3E-54 1E-58 399.0 18.8 287 6-347 3-290 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.2E-53 4.2E-58 393.8 22.1 290 4-343 7-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 8.3E-34 2.8E-38 261.2 14.7 197 115-344 5-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 3.2E-33 1.1E-37 258.0 12.8 187 4-242 104-291 (303)
5 3tgu_G UQCRQ, mitochondrial ub 43.0 20 0.00067 25.1 3.0 44 310-353 33-76 (81)
6 3f2e_A SIRV coat protein; four 41.3 48 0.0016 22.7 4.6 62 293-354 6-74 (100)
7 1pp9_G Ubiquinol-cytochrome C 27.5 29 0.00098 24.2 1.8 43 310-352 33-75 (81)
8 3vjj_A P9-1; 3.00A {Rice black 17.4 55 0.0019 28.4 1.8 36 265-311 273-308 (368)
9 3cx5_H Cytochrome B-C1 complex 14.3 1.8E+02 0.0062 20.7 3.7 42 309-350 42-83 (93)
10 2acm_A Mucin-1; auto-catalytic 13.5 40 0.0014 21.8 -0.0 20 51-70 40-59 (66)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3e-54 Score=398.97 Aligned_cols=287 Identities=25% Similarity=0.304 Sum_probs=248.8
Q ss_pred HHHHhhhHHHHHHHHHhchhHHHHHHHhhcccccCCCCCCCCCCCccHHHHHHHHHHhhchhhhccchhhhhhhhhhchh
Q 018422 6 ANGLAGAGGGIIAQIITYPLQTVNTRQQTERIAKKGLPNCPAAASSSTLRQILEVIKTEGWGGLYSGLKPSLVGTAASQG 85 (356)
Q Consensus 6 ~~~~ag~~a~~~~~~i~~Pld~ik~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~~~ 85 (356)
.++++|++|++++.+++||||+||+|+|++..............+.++++++++|+++||++|||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999764211000001236789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhHhHhhhccchHHHHHHHHhcchhhhhhhhhhhhhhHH
Q 018422 86 IYYYFYQLFKNKAEAFVVAREARGRGDGSVGMFSWLIVAALAGSLNVLLTNPIWVLVTRMQTHTQAERKIMEGKREALVK 165 (356)
Q Consensus 86 ~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~Ple~ik~r~q~~~~~~~~~~~~~~~~~~~ 165 (356)
++|.+||.+++.+.+. ....+....+++|++||+++.++++|+|+||+|||++...
T Consensus 83 i~f~~ye~~k~~~~~~----------~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~-------------- 138 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKG----------SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA-------------- 138 (303)
T ss_dssp HTTTHHHHHHHHHSCC----------CSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--------------
T ss_pred HHHHHHHHHHHHHhcC----------CcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--------------
Confidence 9999999999876532 0135778899999999999999999999999999997421
Q ss_pred hhhhcCCCCcchhhhhhhhcCCCCCCCcHHHHHHHHHhhcccccccccccchhc-cccchhHHHHHHHHHHHHhhhhhhc
Q 018422 166 EALESSTGSTLQDKLAELDLIKPRPYGTFPAAREVYNETGVAGFWKGIIPTLIM-VCNPSIQFMIYEGSLKHLRSKRAAN 244 (356)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~-~~~~~i~~~~y~~~~~~l~~~~~~~ 244 (356)
....+|.+.++++++|+++||++|||||+.+++++ +++.+++|.+||.+++.+.+..
T Consensus 139 -------------------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~--- 196 (303)
T 2lck_A 139 -------------------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN--- 196 (303)
T ss_dssp -------------------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT---
T ss_pred -------------------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 12346889999999999999999999999999999 8899999999999999876532
Q ss_pred ccCCCCcchHHHHHHHHHHHHhHhHhcchHHHHHHHHHhhhccCcccccCCCcHHHHHHHHHHhcCcchhccchhhhhhH
Q 018422 245 KHGLKNVSALEVFLLGALAKLGATVSTYPLLVVKSRLQAKQEIGRNISLRYSGTLDAIIKMIHYEGLPGFYKGMSTKIVQ 324 (356)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~ag~~a~~~t~Pld~ik~r~q~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~~ 324 (356)
....+....+++|++||++++++++|+|+||+|||.+. ...|.++++|+++|+++||++|||||+.++++|
T Consensus 197 ---~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~------~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r 267 (303)
T 2lck_A 197 ---LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA------LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267 (303)
T ss_dssp ---SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHH
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc------ccccCCHHHHHHHHHHHcChHHhhccHHHHHHH
Confidence 22456778899999999999999999999999999964 235999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018422 325 SVFAASILFMVKEELVKAYMALA 347 (356)
Q Consensus 325 ~~~~~~i~~~~ye~~~~~~~~~~ 347 (356)
.+|.++++|.+||.+++++.+..
T Consensus 268 ~~p~~~i~f~~ye~~k~~l~~~~ 290 (303)
T 2lck_A 268 LGSWNVVMFVTYEQLKRALMAAY 290 (303)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999998876544
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.2e-53 Score=393.78 Aligned_cols=290 Identities=17% Similarity=0.263 Sum_probs=240.3
Q ss_pred hHHHHHhhhHHHHHHHHHhchhHHHHHHHhhcccccCCCCCCCCCCCccHHHHHHHHHHhhchhhhccchhhhhhhhhhc
Q 018422 4 AIANGLAGAGGGIIAQIITYPLQTVNTRQQTERIAKKGLPNCPAAASSSTLRQILEVIKTEGWGGLYSGLKPSLVGTAAS 83 (356)
Q Consensus 4 ~~~~~~ag~~a~~~~~~i~~Pld~ik~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~ 83 (356)
...++++|++|++++.+++||+|+||+|+|++..... ..+...++++++++++|+++||++|||||+.+++++.++.
T Consensus 7 ~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~---~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 7 FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ---ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS---CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc---cccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4578999999999999999999999999999864211 0112357899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhHhHhhhccchHHHHHHHHhcchhhhhhhhhhhhhh
Q 018422 84 QGIYYYFYQLFKNKAEAFVVAREARGRGDGSVGMFSWLIVAALAGSLNVLLTNPIWVLVTRMQTHTQAERKIMEGKREAL 163 (356)
Q Consensus 84 ~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~Ple~ik~r~q~~~~~~~~~~~~~~~~~ 163 (356)
.+++|.+||.+++.+...... ..+........+++|++||+++.++++|+|+||+|||++...
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~-----~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~------------ 146 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDR-----HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK------------ 146 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCT-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS------------
T ss_pred HHHHHHHHHHHHHHhccccCc-----ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC------------
Confidence 999999999999854321100 000011346788999999999999999999999999987421
Q ss_pred HHhhhhcCCCCcchhhhhhhhcCCCCCCCcHHHHHHHHHhhcccccccccccchhc-cccchhHHHHHHHHHHHHhhhhh
Q 018422 164 VKEALESSTGSTLQDKLAELDLIKPRPYGTFPAAREVYNETGVAGFWKGIIPTLIM-VCNPSIQFMIYEGSLKHLRSKRA 242 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~-~~~~~i~~~~y~~~~~~l~~~~~ 242 (356)
......|.+.++++++|+++||++|||||+.++++| +++.+++|.+||.+++.+.+.
T Consensus 147 --------------------~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-- 204 (297)
T 1okc_A 147 --------------------GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-- 204 (297)
T ss_dssp --------------------STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--
T ss_pred --------------------CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--
Confidence 012356889999999999999999999999999999 889999999999999976442
Q ss_pred hcccCCCCcchHHHHHHHHHHHHhHhHhcchHHHHHHHHHhhhccCcccccCCCcHHHHHHHHHHhcCcchhccchhhhh
Q 018422 243 ANKHGLKNVSALEVFLLGALAKLGATVSTYPLLVVKSRLQAKQEIGRNISLRYSGTLDAIIKMIHYEGLPGFYKGMSTKI 322 (356)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~ag~~a~~~t~Pld~ik~r~q~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~ 322 (356)
.+.+.+..+++|+++|++++++++|+|+||+|||.+... ......|.++++|+++|+++||++|||||+.+++
T Consensus 205 ------~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~-~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~ 277 (297)
T 1okc_A 205 ------KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR-KGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNV 277 (297)
T ss_dssp ------GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC-CGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHH
T ss_pred ------CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC-CCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHH
Confidence 134577889999999999999999999999999987531 1234579999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 018422 323 VQSVFAASILFMVKEELVKAY 343 (356)
Q Consensus 323 ~~~~~~~~i~~~~ye~~~~~~ 343 (356)
+|. +..+++|.+||.+++++
T Consensus 278 ~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 278 LRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHH-HHHHHHHHHHHTC----
T ss_pred Hhh-ccceeeehHHHHHHhhC
Confidence 996 57899999999988753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8.3e-34 Score=261.22 Aligned_cols=197 Identities=16% Similarity=0.228 Sum_probs=164.5
Q ss_pred CChHHHHHHHHHHhHhHhhhccchHHHHHHHHhcchhhhhhhhhhhhhhHHhhhhcCCCCcchhhhhhhhcCCCCCCCcH
Q 018422 115 VGMFSWLIVAALAGSLNVLLTNPIWVLVTRMQTHTQAERKIMEGKREALVKEALESSTGSTLQDKLAELDLIKPRPYGTF 194 (356)
Q Consensus 115 ~~~~~~~~~~~~a~~~~~~i~~Ple~ik~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (356)
.+.+..+++|++||+++.++++|+|+||+|||++..... ......|++++
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~------------------------------~~~~~~~~~~~ 54 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ------------------------------ISAEKQYKGII 54 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS------------------------------CCGGGSCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc------------------------------cccccccccHH
Confidence 356788999999999999999999999999999742110 01123678999
Q ss_pred HHHHHHHHhhcccccccccccchhc-cccchhHHHHHHHHHHHHhhhhhhcccCCCCcchHHHHHHHHHHHHhHhHhcch
Q 018422 195 PAAREVYNETGVAGFWKGIIPTLIM-VCNPSIQFMIYEGSLKHLRSKRAANKHGLKNVSALEVFLLGALAKLGATVSTYP 273 (356)
Q Consensus 195 ~~~~~i~~~~G~~glyrG~~~~~~~-~~~~~i~~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~t~P 273 (356)
+++++|+++||++|||||+.+.+++ +++.+++|.+||.+++.+...... ......+.+..+++|++||++++++++|
T Consensus 55 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~--~~~~~~~~~~~~~ag~~ag~~~~~~~~P 132 (297)
T 1okc_A 55 DCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDR--HKQFWRYFAGNLASGGAAGATSLCFVYP 132 (297)
T ss_dssp HHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCT--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCc--ccchHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999 889999999999999965442110 0011124577899999999999999999
Q ss_pred HHHHHHHHHhhhccCcccccCCCcHHHHHHHHHHhcCcchhccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 018422 274 LLVVKSRLQAKQEIGRNISLRYSGTLDAIIKMIHYEGLPGFYKGMSTKIVQSVFAASILFMVKEELVKAYM 344 (356)
Q Consensus 274 ld~ik~r~q~~~~~~~~~~~~y~~~~~~~~~i~~~eG~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~~~ 344 (356)
+|+||+|+|.+... ......|.++++|+++|+++||++|||||+.++++|.+|..++.|.+||.+++.+.
T Consensus 133 ld~vktrlq~~~~~-~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 133 LDFARTRLAADVGK-GAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp HHHHHHHHHHCCCS-STTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhccccC-CCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997521 12245789999999999999999999999999999999999999999999998764
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.2e-33 Score=258.05 Aligned_cols=187 Identities=21% Similarity=0.235 Sum_probs=164.3
Q ss_pred hHHHHHhhhHHHHHHHHHhchhHHHHHHHhhcccccCCCCCCCCCCCccHHHHHHHHHHhhchhhhccchhhhhhhhhhc
Q 018422 4 AIANGLAGAGGGIIAQIITYPLQTVNTRQQTERIAKKGLPNCPAAASSSTLRQILEVIKTEGWGGLYSGLKPSLVGTAAS 83 (356)
Q Consensus 4 ~~~~~~ag~~a~~~~~~i~~Pld~ik~~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~~~~~~~~ 83 (356)
....+++|++|++++.++++|+|+||+|+|++... .....+.++++++++|+++||++|||||+.+.+++.++.
T Consensus 104 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 177 (303)
T 2lck_A 104 IGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIV 177 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHH
Confidence 45789999999999999999999999999997642 112357899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHhHhHhhhccchHHHHHHHHhcchhhhhhhhhhhhhh
Q 018422 84 QGIYYYFYQLFKNKAEAFVVAREARGRGDGSVGMFSWLIVAALAGSLNVLLTNPIWVLVTRMQTHTQAERKIMEGKREAL 163 (356)
Q Consensus 84 ~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~Ple~ik~r~q~~~~~~~~~~~~~~~~~ 163 (356)
.+++|.+||.+++.+.+.. ....+....+++|++||+++.++++|+|+||+|||++.
T Consensus 178 ~~i~f~~ye~~k~~l~~~~---------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~-------------- 234 (303)
T 2lck_A 178 NCAELVTYDLIKDTLLKAN---------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSA-------------- 234 (303)
T ss_dssp HHHHHHHHHHHHHTTTTTT---------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------------
T ss_pred HHHHHHHHHHHHHHHHhcc---------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcc--------------
Confidence 9999999999998765421 12346778899999999999999999999999999863
Q ss_pred HHhhhhcCCCCcchhhhhhhhcCCCCCCCcHHHHHHHHHhhcccccccccccchhc-cccchhHHHHHHHHHHHHhhhhh
Q 018422 164 VKEALESSTGSTLQDKLAELDLIKPRPYGTFPAAREVYNETGVAGFWKGIIPTLIM-VCNPSIQFMIYEGSLKHLRSKRA 242 (356)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~-~~~~~i~~~~y~~~~~~l~~~~~ 242 (356)
...|.+.++++++|+++||++|||||+.++++| ++..+++|.+||.+++.+.....
T Consensus 235 -----------------------~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~ 291 (303)
T 2lck_A 235 -----------------------LGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291 (303)
T ss_dssp -----------------------SSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred -----------------------ccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 124789999999999999999999999999999 88999999999999988766443
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=43.00 E-value=20 Score=25.10 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=33.6
Q ss_pred CcchhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018422 310 GLPGFYKGMSTKIVQSVFAASILFMVKEELVKAYMALAVKSQKV 353 (356)
Q Consensus 310 G~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~~~~~~~~~~~~ 353 (356)
|+...+|-+.-+++..+|..++...+|++-++.......|+|.-
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnpad 76 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPAD 76 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGG
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 33444555566788899999999999999999887777776653
No 6
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=41.34 E-value=48 Score=22.71 Aligned_cols=62 Identities=15% Similarity=0.304 Sum_probs=39.2
Q ss_pred cCCCcHHHHHHHHHHhcCc----chhccchhhhhhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhh
Q 018422 293 LRYSGTLDAIIKMIHYEGL----PGFYKGMSTKIVQSVFAAS---ILFMVKEELVKAYMALAVKSQKVL 354 (356)
Q Consensus 293 ~~y~~~~~~~~~i~~~eG~----~~lyrG~~~~~~~~~~~~~---i~~~~ye~~~~~~~~~~~~~~~~~ 354 (356)
+++.++-.-+..++.+-|+ ++.|.||+..+.|..--.+ ...-+..-++.++-.....+|.+|
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaralnr~g~gpalvnminglkayyisafnanp~vl 74 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALNRLGGGPALVNMINGLKAYYISAFNANPTVL 74 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHHHhcCCchHHHHHHhhhhHhhhHhhcCCcHHH
Confidence 4667777777778888886 6789999998887764322 233344455555555555555554
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=27.48 E-value=29 Score=24.24 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=33.1
Q ss_pred CcchhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018422 310 GLPGFYKGMSTKIVQSVFAASILFMVKEELVKAYMALAVKSQK 352 (356)
Q Consensus 310 G~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~~~~~~~~~~~ 352 (356)
|+...+|-+.-+++..+|..++...+|++-.+.......|+|.
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp~ 75 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPA 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC-
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3444666667778889999999999999999888777666654
No 8
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=17.38 E-value=55 Score=28.44 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=26.3
Q ss_pred HhHhHhcchHHHHHHHHHhhhccCcccccCCCcHHHHHHHHHHhcCc
Q 018422 265 LGATVSTYPLLVVKSRLQAKQEIGRNISLRYSGTLDAIIKMIHYEGL 311 (356)
Q Consensus 265 ~~a~~~t~Pld~ik~r~q~~~~~~~~~~~~y~~~~~~~~~i~~~eG~ 311 (356)
.++++=-||||.+|-.++. --++...+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL~S-----------listp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSS-----------LISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSS-----------CCCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhh-----------hccChHHHHHHHHhcCc
Confidence 4567778999999766554 23456778888999985
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=14.34 E-value=1.8e+02 Score=20.71 Aligned_cols=42 Identities=10% Similarity=0.079 Sum_probs=32.7
Q ss_pred cCcchhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018422 309 EGLPGFYKGMSTKIVQSVFAASILFMVKEELVKAYMALAVKS 350 (356)
Q Consensus 309 eG~~~lyrG~~~~~~~~~~~~~i~~~~ye~~~~~~~~~~~~~ 350 (356)
.|+...+|-+.-+++.++|..++...+|++-++.......|.
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l~~Ka 83 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFLYSKA 83 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTSGG
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHHhccc
Confidence 456667777777888899999999999999988776655443
No 10
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=13.51 E-value=40 Score=21.85 Aligned_cols=20 Identities=25% Similarity=0.384 Sum_probs=16.7
Q ss_pred ccHHHHHHHHHHhhchhhhc
Q 018422 51 SSTLRQILEVIKTEGWGGLY 70 (356)
Q Consensus 51 ~~~~~~~~~i~~~eG~~gly 70 (356)
.++.+.+..||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 46788888999999998876
Done!