Your job contains 1 sequence.
>018424
MALCFVLNLKSSRVCFLGNVLNDLQNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQ
ELKTKRSSRRKNSSSFENKDGNLRSSGSTSGVSNSKAVDNSAFSINHEESGTSRRKQNKN
IPRQQTSLKQRFFSSNFRNHGTGRNSHGFISESPPSNSVGYFFGSTPPENHGPRPSKLSV
SPHGTLSSGSPPVGSMPKSFPPFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCS
EEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECRED
LYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAHFGNLGQNHLELDKFSLRHGDKTL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 018424
(356 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1P339 - symbol:LARP1 "Uncharacterized protein"... 518 6.3e-55 2
UNIPROTKB|F1MZU1 - symbol:LARP1 "Uncharacterized protein"... 525 7.1e-55 2
RGD|1306683 - symbol:Larp1 "La ribonucleoprotein domain f... 525 1.2e-54 2
MGI|MGI:1890165 - symbol:Larp1 "La ribonucleoprotein doma... 525 1.6e-54 2
UNIPROTKB|Q6PKG0 - symbol:LARP1 "La-related protein 1" sp... 525 1.8e-54 2
UNIPROTKB|Q659C4 - symbol:LARP1B "La-related protein 1B" ... 504 4.1e-53 2
FB|FBgn0261618 - symbol:larp "La related protein" species... 482 1.9e-44 1
WB|WBGene00020097 - symbol:larp-1 species:6239 "Caenorhab... 359 8.9e-33 2
>UNIPROTKB|F1P339 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:AADN02028672 IPI:IPI00590067
Ensembl:ENSGALT00000006374 Uniprot:F1P339
Length = 927
Score = 518 (187.4 bits), Expect = 6.3e-55, Sum P(2) = 6.3e-55
Identities = 103/194 (53%), Positives = 132/194 (68%)
Query: 151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
S +PP VG+ S H PR + +S SP S G+P VGS P+S P FQHP
Sbjct: 653 SSNPPMECHVGWVMDS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHP 705
Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
SH+LL+ENGF Q Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF
Sbjct: 706 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 765
Query: 267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
++ A+ED Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+ Y G LYGLEK+W
Sbjct: 766 KQLAVEDGKEGYRYGLECLFRYYSYGLEKKFRPDIFKDFQEETIKDYEAGQLYGLEKFWA 825
Query: 327 VLPAFAHFGNLGQN 340
L ++ NL N
Sbjct: 826 FLK-YSKAKNLDIN 838
Score = 82 (33.9 bits), Expect = 6.3e-55, Sum P(2) = 6.3e-55
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQEL 62
G +TG ++ +S+ELA INDGLY++EQ+L
Sbjct: 489 GDRTGNHTSRAKMSSELAKVINDGLYYYEQDL 520
>UNIPROTKB|F1MZU1 [details] [associations]
symbol:LARP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 OMA:GSEPATY
GeneTree:ENSGT00390000000523 EMBL:DAAA02020719 IPI:IPI00714415
PRIDE:F1MZU1 Ensembl:ENSBTAT00000011109 Uniprot:F1MZU1
Length = 951
Score = 525 (189.9 bits), Expect = 7.1e-55, Sum P(2) = 7.1e-55
Identities = 103/182 (56%), Positives = 129/182 (70%)
Query: 151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
S +PP S VG+ S H PR + +S SP S G+P VGS P+S P FQHP
Sbjct: 680 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHP 732
Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
SH+LL+ENGF Q Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF
Sbjct: 733 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 792
Query: 267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
++ ALEDA Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+ Y G LYGLEK+W
Sbjct: 793 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 852
Query: 327 VL 328
L
Sbjct: 853 FL 854
Score = 97 (39.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 216 FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAA 275
F ++ Y +F++ L + K+ G + L+R++SY L + F ++ +FQ+ ++D
Sbjct: 784 FNKKMYEEFKQLALEDAKE---GYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYE 840
Query: 276 ASYNYGIECLFRFYSYGLEK 295
A YG+E + F Y K
Sbjct: 841 AGQLYGLEKFWAFLKYSKAK 860
Score = 75 (31.5 bits), Expect = 7.1e-55, Sum P(2) = 7.1e-55
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQEL 62
G +TG ++ +S ELA INDGL+++EQ+L
Sbjct: 516 GDRTGNHTSRAKMSAELAKVINDGLFYYEQDL 547
>RGD|1306683 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10116 "Rattus norvegicus" [GO:0016239 "positive regulation
of macroautophagy" evidence=ISO] RGD:1306683 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684
GeneTree:ENSGT00390000000523 IPI:IPI00369227 PRIDE:F1M062
Ensembl:ENSRNOT00000036959 Uniprot:F1M062
Length = 1024
Score = 525 (189.9 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 103/182 (56%), Positives = 129/182 (70%)
Query: 151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
S +PP S VG+ S H PR + +S SP S G+P VGS P+S P FQHP
Sbjct: 752 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHP 804
Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
SH+LL+ENGF Q Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF
Sbjct: 805 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 864
Query: 267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
++ ALEDA Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+ Y G LYGLEK+W
Sbjct: 865 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 924
Query: 327 VL 328
L
Sbjct: 925 FL 926
Score = 97 (39.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 216 FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAA 275
F ++ Y +F++ L + K+ G + L+R++SY L + F ++ +FQ+ ++D
Sbjct: 856 FNKKMYEEFKQLALEDAKE---GYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYE 912
Query: 276 ASYNYGIECLFRFYSYGLEK 295
A YG+E + F Y K
Sbjct: 913 AGQLYGLEKFWAFLKYSKAK 932
Score = 75 (31.5 bits), Expect = 1.2e-54, Sum P(2) = 1.2e-54
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQEL 62
G +TG ++ +S ELA INDGL+++EQ+L
Sbjct: 588 GDRTGNHTSRAKMSAELAKVINDGLFYYEQDL 619
>MGI|MGI:1890165 [details] [associations]
symbol:Larp1 "La ribonucleoprotein domain family, member 1"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISA] [GO:0016239 "positive regulation of
macroautophagy" evidence=ISO] MGI:MGI:1890165 GO:GO:0005737
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
EMBL:AL672182 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 OrthoDB:EOG4PZJ64 InterPro:IPR006607
SMART:SM00684 HOGENOM:HOG000113283 HOVERGEN:HBG054322 OMA:GSEPATY
EMBL:BC053449 EMBL:AK129202 IPI:IPI00929761 IPI:IPI00929786
UniGene:Mm.248843 ProteinModelPortal:Q6ZQ58 SMR:Q6ZQ58
STRING:Q6ZQ58 PhosphoSite:Q6ZQ58 PaxDb:Q6ZQ58 PRIDE:Q6ZQ58
Ensembl:ENSMUST00000071487 UCSC:uc007jah.2
GeneTree:ENSGT00390000000523 InParanoid:Q6ZQ58 Bgee:Q6ZQ58
CleanEx:MM_LARP1 Genevestigator:Q6ZQ58
GermOnline:ENSMUSG00000037331 Uniprot:Q6ZQ58
Length = 1072
Score = 525 (189.9 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
Identities = 103/182 (56%), Positives = 129/182 (70%)
Query: 151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
S +PP S VG+ S H PR + +S SP S G+P VGS P+S P FQHP
Sbjct: 800 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHP 852
Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
SH+LL+ENGF Q Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF
Sbjct: 853 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 912
Query: 267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
++ ALEDA Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+ Y G LYGLEK+W
Sbjct: 913 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 972
Query: 327 VL 328
L
Sbjct: 973 FL 974
Score = 97 (39.2 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 216 FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAA 275
F ++ Y +F++ L + K+ G + L+R++SY L + F ++ +FQ+ ++D
Sbjct: 904 FNKKMYEEFKQLALEDAKE---GYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYE 960
Query: 276 ASYNYGIECLFRFYSYGLEK 295
A YG+E + F Y K
Sbjct: 961 AGQLYGLEKFWAFLKYSKAK 980
Score = 75 (31.5 bits), Expect = 1.6e-54, Sum P(2) = 1.6e-54
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQEL 62
G +TG ++ +S ELA INDGL+++EQ+L
Sbjct: 636 GDRTGNHTSRAKMSAELAKVINDGLFYYEQDL 667
>UNIPROTKB|Q6PKG0 [details] [associations]
symbol:LARP1 "La-related protein 1" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0016239
"positive regulation of macroautophagy" evidence=IMP]
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003723 GO:GO:0016239
InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193 Pfam:PF05383
SMART:SM00715 InterPro:IPR006607 SMART:SM00684 EMBL:BC001460
EMBL:BC033856 EMBL:AK091465 EMBL:AB018274 EMBL:AL133034
IPI:IPI00185919 IPI:IPI00411690 PIR:T42646 RefSeq:NP_056130.2
UniGene:Hs.292078 ProteinModelPortal:Q6PKG0 SMR:Q6PKG0
IntAct:Q6PKG0 MINT:MINT-1631511 STRING:Q6PKG0 PhosphoSite:Q6PKG0
DMDM:73621135 PaxDb:Q6PKG0 PRIDE:Q6PKG0 DNASU:23367
Ensembl:ENST00000336314 Ensembl:ENST00000518297 GeneID:23367
KEGG:hsa:23367 UCSC:uc003lvo.3 UCSC:uc010jie.1 CTD:23367
GeneCards:GC05P154092 HGNC:HGNC:29531 HPA:CAB015222 MIM:612059
neXtProt:NX_Q6PKG0 PharmGKB:PA142671564 HOGENOM:HOG000113283
HOVERGEN:HBG054322 InParanoid:Q6PKG0 OMA:GSEPATY ChiTaRS:LARP1
GenomeRNAi:23367 NextBio:45430 PMAP-CutDB:Q6PKG0 Bgee:Q6PKG0
CleanEx:HS_LARP1 Genevestigator:Q6PKG0 GermOnline:ENSG00000155506
Uniprot:Q6PKG0
Length = 1096
Score = 525 (189.9 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 103/182 (56%), Positives = 129/182 (70%)
Query: 151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
S +PP S VG+ S H PR + +S SP S G+P VGS P+S P FQHP
Sbjct: 823 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPTVGSYGCTPQSLPKFQHP 875
Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
SH+LL+ENGF Q Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF
Sbjct: 876 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 935
Query: 267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
++ ALEDA Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+ Y G LYGLEK+W
Sbjct: 936 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 995
Query: 327 VL 328
L
Sbjct: 996 FL 997
Score = 97 (39.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 216 FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAA 275
F ++ Y +F++ L + K+ G + L+R++SY L + F ++ +FQ+ ++D
Sbjct: 927 FNKKMYEEFKQLALEDAKE---GYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYE 983
Query: 276 ASYNYGIECLFRFYSYGLEK 295
A YG+E + F Y K
Sbjct: 984 AGQLYGLEKFWAFLKYSKAK 1003
Score = 75 (31.5 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQEL 62
G +TG ++ +S ELA INDGL+++EQ+L
Sbjct: 659 GDRTGNHTSRAKMSAELAKVINDGLFYYEQDL 690
>UNIPROTKB|Q659C4 [details] [associations]
symbol:LARP1B "La-related protein 1B" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 InterPro:IPR006630 PROSITE:PS50961
eggNOG:COG5193 Pfam:PF05383 SMART:SM00715 EMBL:AK001240
EMBL:AK027164 EMBL:AK092764 EMBL:AK098437 EMBL:AL137759
EMBL:AL832170 EMBL:BX537937 EMBL:AC096898 EMBL:AC099340
EMBL:AC108045 EMBL:AC114735 EMBL:AC124030 EMBL:BC030516
EMBL:BC050654 EMBL:BC062606 EMBL:BC110300 IPI:IPI00383949
IPI:IPI00855721 IPI:IPI00855786 IPI:IPI00855812 IPI:IPI00855930
IPI:IPI00855953 IPI:IPI00856120 IPI:IPI00940348 IPI:IPI00943149
RefSeq:NP_060548.2 RefSeq:NP_115615.2 RefSeq:NP_835144.1
UniGene:Hs.657067 HSSP:Q71RC2 ProteinModelPortal:Q659C4 SMR:Q659C4
DIP:DIP-47319N IntAct:Q659C4 PhosphoSite:Q659C4 DMDM:158564329
PaxDb:Q659C4 PRIDE:Q659C4 DNASU:55132 Ensembl:ENST00000264584
Ensembl:ENST00000326639 Ensembl:ENST00000354456
Ensembl:ENST00000394288 Ensembl:ENST00000441387 GeneID:55132
KEGG:hsa:55132 UCSC:uc003ifw.1 UCSC:uc003iga.3 UCSC:uc003igc.3
UCSC:uc003igf.3 CTD:55132 GeneCards:GC04P128983 HGNC:HGNC:24704
HPA:HPA036280 neXtProt:NX_Q659C4 PharmGKB:PA165664174
InParanoid:Q659C4 OMA:PPYVKKH OrthoDB:EOG4PZJ64 PhylomeDB:Q659C4
ChiTaRS:LARP1B GenomeRNAi:55132 NextBio:58806 ArrayExpress:Q659C4
Bgee:Q659C4 CleanEx:HS_LARP2 Genevestigator:Q659C4
InterPro:IPR006607 SMART:SM00684 Uniprot:Q659C4
Length = 914
Score = 504 (182.5 bits), Expect = 4.1e-53, Sum P(2) = 4.1e-53
Identities = 99/182 (54%), Positives = 128/182 (70%)
Query: 151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGSM---PKSFPPFQHP 206
S +PP VG+ S + GP S +S S + + S G+P GS P SFP FQHP
Sbjct: 642 STNPPLECHVGWVMDS---RDRGPGTSSVSTS-NASPSEGAPLAGSYGCTPHSFPKFQHP 697
Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
SH+LL+ENGF QQ Y K+R+RCL+ERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF
Sbjct: 698 SHELLKENGFTQQVYHKYRRRCLSERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 757
Query: 267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
++ A EDA +Y YG+ECLFRFYSYGLEK+ R ++++DF++ T Y G LYGLEK+W
Sbjct: 758 RQLAWEDAKENYRYGLECLFRFYSYGLEKKFRREIFQDFQEETKKDYESGQLYGLEKFWA 817
Query: 327 VL 328
L
Sbjct: 818 YL 819
Score = 86 (35.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 216 FRQQKYLKFRKRCLNERK---KLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALE 272
F ++ Y +FR+ + K + G+ C L+RF+SY L + F ++ +FQ+ +
Sbjct: 749 FNKKMYEEFRQLAWEDAKENYRYGLEC------LFRFYSYGLEKKFRREIFQDFQEETKK 802
Query: 273 DAAASYNYGIECLFRFYSYGLEK 295
D + YG+E + + Y K
Sbjct: 803 DYESGQLYGLEKFWAYLKYSQSK 825
Score = 79 (32.9 bits), Expect = 4.1e-53, Sum P(2) = 4.1e-53
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQEL 62
G +TG ++ I++ELA INDGLY++EQ+L
Sbjct: 464 GDRTGTHMSRAKITSELAKVINDGLYYYEQDL 495
>FB|FBgn0261618 [details] [associations]
symbol:larp "La related protein" species:7227 "Drosophila
melanogaster" [GO:0005737 "cytoplasm" evidence=IDA] [GO:0035071
"salivary gland cell autophagic cell death" evidence=IEP]
[GO:0048102 "autophagic cell death" evidence=IEP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0051225 "spindle assembly" evidence=IMP]
[GO:0007076 "mitotic chromosome condensation" evidence=IMP]
[GO:0051299 "centrosome separation" evidence=IMP] [GO:0007053
"spindle assembly involved in male meiosis" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0007140 "male
meiosis" evidence=IMP] [GO:0000001 "mitochondrion inheritance"
evidence=IMP] [GO:0035186 "syncytial blastoderm mitotic cell cycle"
evidence=IMP] EMBL:AE014297 GO:GO:0005829 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003723 GO:GO:0000001 GO:GO:0035071
GO:GO:0035186 InterPro:IPR006630 PROSITE:PS50961 eggNOG:COG5193
Pfam:PF05383 SMART:SM00715 InterPro:IPR006607 SMART:SM00684
ChiTaRS:LARP1 GeneTree:ENSGT00390000000523 EMBL:AF221108
EMBL:AY113653 EMBL:AY118468 EMBL:BT100187 RefSeq:NP_001163757.1
RefSeq:NP_001247347.1 RefSeq:NP_001247348.1 RefSeq:NP_524998.1
RefSeq:NP_733244.5 RefSeq:NP_733245.1 IntAct:Q9VAW5 STRING:Q9VAW5
PaxDb:Q9VAW5 PRIDE:Q9VAW5 EnsemblMetazoa:FBtr0301180
EnsemblMetazoa:FBtr0306389 EnsemblMetazoa:FBtr0306390 GeneID:53567
KEGG:dme:Dmel_CG42551 CTD:53567 FlyBase:FBgn0261618
InParanoid:Q9VAW5 OMA:EPEINEM PhylomeDB:Q9VAW5 GenomeRNAi:53567
NextBio:841422 Bgee:Q9VAW5 GermOnline:CG14066 GO:GO:0007053
Uniprot:Q9VAW5
Length = 1673
Score = 482 (174.7 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 114/296 (38%), Positives = 156/296 (52%)
Query: 43 ISNELASAINDGLYFFEQELXXXXXXXXXXXXX--FENKDGNLRXXXXXXXXXXXKAVDN 100
I+ +L + INDGL +E++L D + V
Sbjct: 1163 ITQDLENIINDGLVNYEEDLWTTTNVVADYKTVNVISQADFEKLAGGRNKSVLPPQVVPP 1222
Query: 101 SA-FSINHEESGTSRRKQNKNIPRQQTSLKQRFFSSNFRNHG----TGRNSHGFISESPP 155
F + +E+ N + S + RF+++ +H T R + +PP
Sbjct: 1223 PPPFEEDLDETLVGDTTLNSTLNNTLKSRRARFYAAP-NSHSIDPRTPRKRKLRHTANPP 1281
Query: 156 SNS-VGYFFGSTPPENHGPRPSKL--SVSPHGTLSSGSPPVGSMPKSFPPFQHPSHQLLE 212
+ VG+ + H PR + + S T SS S+P+S P FQHPSH LL+
Sbjct: 1282 VEAHVGWLLDTV---EHRPRTTSMGSSAGTSPTASSYGSFGSSVPQSLPVFQHPSHALLK 1338
Query: 213 ENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALE 272
EN F QQ Y K+ RCL ER++LG G S+EMNTLYRFWS+FLRE F SMYNEF+ ALE
Sbjct: 1339 ENNFTQQAYHKYHSRCLKERRRLGYGQSQEMNTLYRFWSFFLRENFNKSMYNEFRSLALE 1398
Query: 273 DAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVL 328
DA + YG+ECLFRF+SYGLEK+ R ++Y+DF+ T+ Y G LYGLEK+W L
Sbjct: 1399 DAGNGFRYGLECLFRFFSYGLEKKFRPNIYQDFQDETIADYETGQLYGLEKFWAFL 1454
>WB|WBGene00020097 [details] [associations]
symbol:larp-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0034046 "poly(G) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0040010 GO:GO:0008266
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0040035 GO:GO:0000932 GO:GO:0034046
InterPro:IPR006630 PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
InterPro:IPR006607 SMART:SM00684 GeneTree:ENSGT00390000000523
EMBL:FO080694 ProteinModelPortal:D5MCN2 SMR:D5MCN2 PRIDE:D5MCN2
EnsemblMetazoa:R144.7b KEGG:cel:CELE_R144.7 CTD:175680
WormBase:R144.7b OMA:CAEMNTL ArrayExpress:D5MCN2 Uniprot:D5MCN2
Length = 1150
Score = 359 (131.4 bits), Expect = 8.9e-33, Sum P(2) = 8.9e-33
Identities = 75/139 (53%), Positives = 94/139 (67%)
Query: 192 PVG-SMPKSFPPFQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFW 250
P+G + S P HPS LL+E+ F Q Y +R+ CL +RK LG C+E MNTLYRFW
Sbjct: 977 PIGIAASSSQVPANHPSISLLQEDRFVQNVYSTWRQACLKQRKSLGYDCAE-MNTLYRFW 1035
Query: 251 SYFLREMFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDF-EQLT 309
S+FLR+ F +MY EF+K ALEDA YGIE LFRFYSYGLEK+ R ++YK+F + +T
Sbjct: 1036 SFFLRDNFNRNMYEEFRKLALEDAEIGSRYGIEALFRFYSYGLEKKFRPEIYKNFMKDVT 1095
Query: 310 LDFYHKGNLYGLEKYWYVL 328
D KG LYGLEK + L
Sbjct: 1096 TDV-QKGELYGLEKLFAFL 1113
Score = 39 (18.8 bits), Expect = 8.9e-33, Sum P(2) = 8.9e-33
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 110 SGTSRRKQNKNIPRQQT-SLKQ 130
SG+ NK P+QQ SL+Q
Sbjct: 729 SGSQSTNDNKRQPQQQQKSLQQ 750
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 356 332 0.00090 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 610 (65 KB)
Total size of DFA: 246 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.30u 0.15s 30.45t Elapsed: 00:00:02
Total cpu time: 30.31u 0.15s 30.46t Elapsed: 00:00:02
Start: Sat May 11 13:08:31 2013 End: Sat May 11 13:08:33 2013