BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018424
(356 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6ZQ58|LARP1_MOUSE La-related protein 1 OS=Mus musculus GN=Larp1 PE=1 SV=2
Length = 1072
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/348 (38%), Positives = 184/348 (52%), Gaps = 60/348 (17%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQELKTKR-----SSRRKNSSSFENKDGNLRS 85
G +TG ++ +S ELA INDGL+++EQ+L T++ S ++ +F K N+ S
Sbjct: 636 GDRTGNHTSRAKMSAELAKVINDGLFYYEQDLWTEKFEPEYSQIKQEVENF--KKVNMIS 693
Query: 86 SGSTSGVSNSKAVDNS---------------------------------AFSINHEESGT 112
++ VD + + ES
Sbjct: 694 REQFDTLTPEPPVDPNQEVPPGPPRFQQVPTDALANKLFGAPEPSTIARSLPTTVPESPN 753
Query: 113 SRRKQNKNIPR----QQTSLKQRFFS----SNFRNHGTGRNSHGFISESPPSNS-VGYFF 163
R + PR + +S RF+ + R S +PP S VG+
Sbjct: 754 YRNARTPRTPRTPQLKDSSQTPRFYPVVKEGRTLDAKMPRKRKTRHSSNPPLESHVGWVM 813
Query: 164 GSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS---MPKSFPPFQHPSHQLLEENGFRQQK 220
S H PR + +S SP S G+P VGS P+S P FQHPSH+LL+ENGF Q
Sbjct: 814 DS---REHRPRTASISSSP----SEGTPAVGSYGCTPQSLPKFQHPSHELLKENGFTQHV 866
Query: 221 YLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAAASYNY 280
Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF++ ALEDA Y Y
Sbjct: 867 YHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFKQLALEDAKEGYRY 926
Query: 281 GIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVL 328
G+ECLFR+YSYGLEK+ R D++KDF++ T+ Y G LYGLEK+W L
Sbjct: 927 GLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWAFL 974
>sp|Q6PKG0|LARP1_HUMAN La-related protein 1 OS=Homo sapiens GN=LARP1 PE=1 SV=2
Length = 1096
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/182 (56%), Positives = 129/182 (70%), Gaps = 11/182 (6%)
Query: 151 SESPPSNS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS---MPKSFPPFQHP 206
S +PP S VG+ S H PR + +S SP S G+P VGS P+S P FQHP
Sbjct: 823 SSNPPLESHVGWVMDS---REHRPRTASISSSP----SEGTPTVGSYGCTPQSLPKFQHP 875
Query: 207 SHQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEF 266
SH+LL+ENGF Q Y K+R+RCLNERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF
Sbjct: 876 SHELLKENGFTQHVYHKYRRRCLNERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEF 935
Query: 267 QKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWY 326
++ ALEDA Y YG+ECLFR+YSYGLEK+ R D++KDF++ T+ Y G LYGLEK+W
Sbjct: 936 KQLALEDAKEGYRYGLECLFRYYSYGLEKKFRLDIFKDFQEETVKDYEAGQLYGLEKFWA 995
Query: 327 VL 328
L
Sbjct: 996 FL 997
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQEL 62
G +TG ++ +S ELA INDGL+++EQ+L
Sbjct: 659 GDRTGNHTSRAKMSAELAKVINDGLFYYEQDL 690
>sp|Q659C4|LAR1B_HUMAN La-related protein 1B OS=Homo sapiens GN=LARP1B PE=1 SV=2
Length = 914
Score = 194 bits (494), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 124/173 (71%), Gaps = 7/173 (4%)
Query: 159 VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS---MPKSFPPFQHPSHQLLEENG 215
VG+ S + GP S +S S + + S G+P GS P SFP FQHPSH+LL+ENG
Sbjct: 651 VGWVMDS---RDRGPGTSSVSTS-NASPSEGAPLAGSYGCTPHSFPKFQHPSHELLKENG 706
Query: 216 FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAA 275
F QQ Y K+R+RCL+ERK+LGIG S+EMNTL+RFWS+FLR+ F MY EF++ A EDA
Sbjct: 707 FTQQVYHKYRRRCLSERKRLGIGQSQEMNTLFRFWSFFLRDHFNKKMYEEFRQLAWEDAK 766
Query: 276 ASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVL 328
+Y YG+ECLFRFYSYGLEK+ R ++++DF++ T Y G LYGLEK+W L
Sbjct: 767 ENYRYGLECLFRFYSYGLEKKFRREIFQDFQEETKKDYESGQLYGLEKFWAYL 819
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 32 GSKTGGKGLKS-ISNELASAINDGLYFFEQEL 62
G +TG ++ I++ELA INDGLY++EQ+L
Sbjct: 464 GDRTGTHMSRAKITSELAKVINDGLYYYEQDL 495
>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
Length = 1673
Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 163/301 (54%), Gaps = 24/301 (7%)
Query: 43 ISNELASAINDGLYFFEQEL--KTKRSSRRKNSSSFENKD-GNLRSSGSTSGVSNSKAVD 99
I+ +L + INDGL +E++L T + K + D L + S +
Sbjct: 1163 ITQDLENIINDGLVNYEEDLWTTTNVVADYKTVNVISQADFEKLAGGRNKSVLPPQVVPP 1222
Query: 100 NSAFSINHEESGTSRRKQNKNIPRQQTSLKQRFFS---SNFRNHGTGRNSHGFISESPPS 156
F + +E+ N + S + RF++ S+ + T R + +PP
Sbjct: 1223 PPPFEEDLDETLVGDTTLNSTLNNTLKSRRARFYAAPNSHSIDPRTPRKRKLRHTANPPV 1282
Query: 157 NS-VGYFFGSTPPENHGPRPSKLSVSPHGTLSSGSPPVGS--------MPKSFPPFQHPS 207
+ VG+ + H PR + + S +G+ P S +P+S P FQHPS
Sbjct: 1283 EAHVGWLLDTV---EHRPRTTSMGSS------AGTSPTASSYGSFGSSVPQSLPVFQHPS 1333
Query: 208 HQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQ 267
H LL+EN F QQ Y K+ RCL ER++LG G S+EMNTLYRFWS+FLRE F SMYNEF+
Sbjct: 1334 HALLKENNFTQQAYHKYHSRCLKERRRLGYGQSQEMNTLYRFWSFFLRENFNKSMYNEFR 1393
Query: 268 KFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYV 327
ALEDA + YG+ECLFRF+SYGLEK+ R ++Y+DF+ T+ Y G LYGLEK+W
Sbjct: 1394 SLALEDAGNGFRYGLECLFRFFSYGLEKKFRPNIYQDFQDETIADYETGQLYGLEKFWAF 1453
Query: 328 L 328
L
Sbjct: 1454 L 1454
>sp|A7MGW6|HSCA_CROS8 Chaperone protein HscA OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=hscA PE=3 SV=1
Length = 616
Score = 38.5 bits (88), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 46 ELASAINDGLYFFEQELKTKRSSRRKNSSS--FENKDGNLRSSGSTSGVSNSKAVDNSAF 103
E+AS I D + F EQ+++ + + +K ++ E+ DG L+S G+ + A+D++
Sbjct: 508 EIASMIQDSMSFAEQDVQARMLAEQKVEAARVLESLDGALKSDGALLSAAERAAIDDAMA 567
Query: 104 SINHEESG---TSRRKQNKNIPRQQTSLKQRFFSSNFRN 139
+ G ++ KN +Q R + R
Sbjct: 568 QLRAAAEGNDASAIEDAIKNTDKQTQEFAARRMDESIRQ 606
>sp|A9MHJ8|HSCA_SALAR Chaperone protein HscA OS=Salmonella arizonae (strain ATCC BAA-731
/ CDC346-86 / RSK2980) GN=hscA PE=3 SV=1
Length = 616
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 45 NELASAINDGLYFFEQELKTKRSSRRKNSSS--FENKDGNLRSSGSTSGVSNSKAVDNSA 102
+E+AS I D + F EQ++K + + +K ++ E+ G L + + + + +D++A
Sbjct: 507 SEIASMIKDSMSFAEQDVKARMLAEQKVEAARVLESLTGALTADAALLSAAERQCIDDAA 566
Query: 103 FSINHEESG---TSRRKQNKNIPRQQTSLKQRFFSSNFR 138
+N G + + KN+ +Q R + R
Sbjct: 567 AHLNAVAQGDDVDAIEQAIKNVDKQTQEFAARRMDQSVR 605
>sp|Q2RVF0|TOLB_RHORT Protein TolB OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB
8255) GN=tolB PE=3 SV=1
Length = 443
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 25/180 (13%)
Query: 4 CFVLNLKSSRVCFLGNVLNDLQNSWAVEGSKTGGKGLKSISNELASAINDGLYFFEQELK 63
++ N+++ R LG+ ++A S G K + S+ A++ +E +L+
Sbjct: 238 VYLFNIETGRRELLGDFPG---MTFAPRFSPDGNKVIMSM------ALDGNTEIYEMDLR 288
Query: 64 TKRSSRRKNSSSFENK-----DGNLRSSGSTSGVSNSKAVDNSAFS-INHEESGTSRRKQ 117
T+RSSR N S + DG + S G + V N+ S + G R
Sbjct: 289 TRRSSRLTNHPSIDTSPSYAPDGRQITFNSDRGGAQQIYVMNADGSGVQRISFGDGRYAT 348
Query: 118 NKNIPRQQ----TSLK-QRFFSSNFRNHGTGRN--SHGFISESP---PSNSVGYFFGSTP 167
PR T LK RFF R G+G + GF+ E P P+ V FF P
Sbjct: 349 PVWSPRGDLIAFTKLKGGRFFIGAMRPDGSGEKILTEGFLVEGPTWAPNGRVLMFFRQDP 408
>sp|A8AD56|HSCA_CITK8 Chaperone protein HscA OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=hscA PE=3 SV=1
Length = 616
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 45 NELASAINDGLYFFEQELKTKRSSRRKNSSS--FENKDGNLRSSGSTSGVSNSKAVDNSA 102
+E+A+ I D + F EQ++K + + +K ++ E+ G L + + + + +D++A
Sbjct: 507 SEIATMIQDSMSFAEQDVKARMLAEQKVEAARVLESLTGALAADAALLSAAERQVIDDAA 566
Query: 103 F---SINHEESGTSRRKQNKNIPRQQTSLKQRFFSSNFR 138
+ + G + + KN+ +Q R + R
Sbjct: 567 AHLSEVAQSDDGDAIEQAIKNVDKQTQEFAARRMDKSVR 605
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 141,278,520
Number of Sequences: 539616
Number of extensions: 6389213
Number of successful extensions: 22043
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 259
Number of HSP's that attempted gapping in prelim test: 20508
Number of HSP's gapped (non-prelim): 1452
length of query: 356
length of database: 191,569,459
effective HSP length: 118
effective length of query: 238
effective length of database: 127,894,771
effective search space: 30438955498
effective search space used: 30438955498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)