Query 018424
Match_columns 356
No_of_seqs 109 out of 124
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 08:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00684 DM15 Tandem repeat 99.7 2.8E-18 6.1E-23 121.9 3.9 39 257-295 1-39 (39)
2 smart00684 DM15 Tandem repeat 99.6 2.3E-15 4.9E-20 107.1 3.4 38 216-256 2-39 (39)
3 KOG2590 RNA-binding protein LA 91.8 0.15 3.2E-06 52.9 3.5 55 14-70 350-407 (448)
4 PRK10167 hypothetical protein; 31.0 2E+02 0.0044 26.5 7.0 30 242-271 29-60 (169)
5 PF11553 DUF3231: Protein of u 30.3 42 0.0009 29.5 2.4 44 282-325 107-153 (166)
6 PF15471 TMEM171: Transmembran 25.3 1.8E+02 0.0039 29.6 6.0 27 150-176 246-272 (319)
7 COG1198 PriA Primosomal protei 16.5 1E+02 0.0022 34.5 2.5 33 203-237 600-632 (730)
8 PF04504 DUF573: Protein of un 16.1 3.5E+02 0.0075 22.6 5.0 47 224-270 15-62 (98)
9 PRK15183 Vi polysaccharide bio 15.8 84 0.0018 28.1 1.4 18 12-29 16-33 (143)
10 KOG1257 NADP+-dependent malic 15.5 98 0.0021 33.8 2.0 50 294-354 229-278 (582)
No 1
>smart00684 DM15 Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function.
Probab=99.72 E-value=2.8e-18 Score=121.92 Aligned_cols=39 Identities=46% Similarity=0.937 Sum_probs=37.7
Q ss_pred hccHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhhhhh
Q 018424 257 MFIPSMYNEFQKFALEDAAASYNYGIECLFRFYSYGLEK 295 (356)
Q Consensus 257 nFN~~MY~EFR~lALEDa~~g~~yGLEcLfRFYsygLe~ 295 (356)
|||++||+|||++||||++.+++||||||||||||||++
T Consensus 1 ~Fn~~~Y~eFr~laled~~~~~~~gm~~LfRFwsy~L~~ 39 (39)
T smart00684 1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39 (39)
T ss_pred CchhhHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhccC
Confidence 799999999999999999999999999999999999985
No 2
>smart00684 DM15 Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function.
Probab=99.55 E-value=2.3e-15 Score=107.11 Aligned_cols=38 Identities=58% Similarity=1.081 Sum_probs=36.4
Q ss_pred CchhhhHHHHHHHHHHHhhcCCCCchhhhhhHHHhhHHHHh
Q 018424 216 FRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLRE 256 (356)
Q Consensus 216 F~qq~Y~kfr~~cL~qRk~~g~G~s~EMntLYRFWS~FLr~ 256 (356)
|++++|++||+.||+||++.| +++|++|||||||||++
T Consensus 2 Fn~~~Y~eFr~laled~~~~~---~~gm~~LfRFwsy~L~~ 39 (39)
T smart00684 2 FNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK 39 (39)
T ss_pred chhhHHHHHHHHHHHHHHHcC---ChhHHHHHHHHHhhccC
Confidence 999999999999999999877 89999999999999985
No 3
>KOG2590 consensus RNA-binding protein LARP/SRO9 and related La domain proteins [Posttranslational modification, protein turnover, chaperones; Translation, ribosomal structure and biogenesis]
Probab=91.85 E-value=0.15 Score=52.94 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=45.5
Q ss_pred cccccceEEEecCCCC--CCCCCCCCcc-cccccHHHHHHhhhhhhhhHHhhhhhccCCc
Q 018424 14 VCFLGNVLNDLQNSWA--VEGSKTGGKG-LKSISNELASAINDGLYFFEQELKTKRSSRR 70 (356)
Q Consensus 14 ~~~inKllIVTQ~~~~--~kgdr~g~~~-~~kis~ELas~INDGLy~YEqdLw~k~~~~~ 70 (356)
+.++++++||+|++.. +.+|++|... +++++.+|+.+|+|+ +|+|++|.......
T Consensus 350 ~~alr~s~ive~~~d~~~r~~~~~g~~~~ra~~~s~l~~~~~~~--~~~q~~~~e~~e~e 407 (448)
T KOG2590|consen 350 LAALRNSLIVEETGDLERRGGDRWGNHVSRAKESSPLDKAVDRR--DYWQDLLMEQNEDE 407 (448)
T ss_pred HHHHhhhhhhhccchhhhcccccccceecccccCCcchhhhhhh--HHHHHHhhhccccc
Confidence 3467899999999664 4588898854 789999999999999 89999999875443
No 4
>PRK10167 hypothetical protein; Provisional
Probab=30.99 E-value=2e+02 Score=26.52 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=24.8
Q ss_pred hhhhhHHHhh-H-HHHhhccHHHHHHHHHHHH
Q 018424 242 EMNTLYRFWS-Y-FLREMFIPSMYNEFQKFAL 271 (356)
Q Consensus 242 EMntLYRFWS-~-FLr~nFN~~MY~EFR~lAL 271 (356)
.+..|=.||+ | +|.--=|+..|.+-.++.-
T Consensus 29 t~~~Lv~Fhsr~KyllMaHsq~~yr~LG~lva 60 (169)
T PRK10167 29 TRGALLDYHSRYKLVFLAHSQPEYRKLGPFVA 60 (169)
T ss_pred CHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHh
Confidence 4678889999 7 7666679999999998873
No 5
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=30.33 E-value=42 Score=29.47 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=32.2
Q ss_pred hHHHHHHHhhhhhhhhhHHH---HHHHHHHHHhhccCCcccchhhhc
Q 018424 282 IECLFRFYSYGLEKECREDL---YKDFEQLTLDFYHKGNLYGLEKYW 325 (356)
Q Consensus 282 LEcLfRFYsygLe~~fr~~l---y~DF~~ltl~d~~~g~lYGLEK~w 325 (356)
...-...|+-+|....|.|| |.+|...+++-++.+--|+++|=|
T Consensus 107 ~~~~~~~~~~al~~s~R~Dl~~~f~~~~~~~~~~~~~~~~l~~~KGw 153 (166)
T PF11553_consen 107 SQAGITNYGRALSSSVRNDLRAFFMKFLMEALELYDKIVKLMKEKGW 153 (166)
T ss_dssp HHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 33445567777888899987 666677778889999999999999
No 6
>PF15471 TMEM171: Transmembrane protein family 171
Probab=25.29 E-value=1.8e+02 Score=29.55 Aligned_cols=27 Identities=37% Similarity=0.599 Sum_probs=19.2
Q ss_pred ccCCCCCCccceeecCCCCCCCCCCCC
Q 018424 150 ISESPPSNSVGYFFGSTPPENHGPRPS 176 (356)
Q Consensus 150 ~s~~pp~~~vgw~~~~~~~~~~~~~~~ 176 (356)
.+||||+..-=|-.|.+.+|+++..+-
T Consensus 246 ~senPPsY~SIFn~g~t~~e~q~~as~ 272 (319)
T PF15471_consen 246 PSENPPSYYSIFNYGRTTPEGQGAASE 272 (319)
T ss_pred CCCCCCCcchhccCCCcCcccCCcccc
Confidence 578999754447777887888876543
No 7
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=16.50 E-value=1e+02 Score=34.46 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=28.0
Q ss_pred CCCChHHHhhhcCCchhhhHHHHHHHHHHHhhcCC
Q 018424 203 FQHPSHQLLEENGFRQQKYLKFRKRCLNERKKLGI 237 (356)
Q Consensus 203 f~hpsh~lL~engF~qq~Y~kfr~~cL~qRk~~g~ 237 (356)
-.+|+|+.++. -..+.|..|-++.|++|+.+++
T Consensus 600 T~~P~hp~i~~--~~~~dy~~F~~~El~~Rk~~~~ 632 (730)
T COG1198 600 TYNPDHPAIQA--LKRGDYEAFYEQELAERKELGL 632 (730)
T ss_pred eCCCCcHHHHH--HHhcCHHHHHHHHHHHHHhcCC
Confidence 35899999988 4677999999999999997665
No 8
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=16.06 E-value=3.5e+02 Score=22.57 Aligned_cols=47 Identities=19% Similarity=0.291 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcCCCCchhhhhhHHHhhHHHHhhccH-HHHHHHHHHH
Q 018424 224 FRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIP-SMYNEFQKFA 270 (356)
Q Consensus 224 fr~~cL~qRk~~g~G~s~EMntLYRFWS~FLr~nFN~-~MY~EFR~lA 270 (356)
+-+..++-|.+.|.+-..+|+.+|.+=.-.|..+||. .+|+..|+|=
T Consensus 15 iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK 62 (98)
T PF04504_consen 15 ILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLK 62 (98)
T ss_pred HHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 4455677788888877779999999998888888874 5677777653
No 9
>PRK15183 Vi polysaccharide biosynthesis protein TviA; Provisional
Probab=15.77 E-value=84 Score=28.11 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=14.7
Q ss_pred cccccccceEEEecCCCC
Q 018424 12 SRVCFLGNVLNDLQNSWA 29 (356)
Q Consensus 12 ~~~~~inKllIVTQ~~~~ 29 (356)
+|..|||||||+--+++.
T Consensus 16 sr~~dinkiiiiisssrl 33 (143)
T PRK15183 16 TRMSDINKIIVIISSSRL 33 (143)
T ss_pred hhccccceEEEEEecccc
Confidence 688999999999877653
No 10
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=15.55 E-value=98 Score=33.81 Aligned_cols=50 Identities=16% Similarity=0.277 Sum_probs=37.6
Q ss_pred hhhhhHHHHHHHHHHHHhhccCCcccchhhhcccchhhhhhcCCCCCCchHHHHHhhhCCC
Q 018424 294 EKECREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAHFGNLGQNHLELDKFSLRHGDK 354 (356)
Q Consensus 294 e~~fr~~ly~DF~~ltl~d~~~g~lYGLEK~w~~l~af~~y~~~~~~~p~l~~~l~~~~~~ 354 (356)
+++.+-+.|.||.++-++... +.||...+- -|-.+. .+.-.++|+||+.+
T Consensus 229 ~~R~~g~eYd~~~dEFm~Av~--~~yG~~~lI----qFEDF~-----~~nAfrlL~kYr~~ 278 (582)
T KOG1257|consen 229 QRRVRGKEYDEFLDEFMEAVV--QRYGPNTLI----QFEDFA-----NHNAFRLLEKYRNK 278 (582)
T ss_pred cccccccHHHHHHHHHHHHHH--HHhCcceEE----Eehhcc-----chhHHHHHHHhccc
Confidence 468888899999999888765 578888777 444433 44578889999876
Done!