Query 018424
Match_columns 356
No_of_seqs 109 out of 124
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 15:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hl4_A TBC1 domain family memb 23.4 1.4E+02 0.0047 27.0 6.0 83 262-352 113-198 (292)
2 2rbd_A BH2358 protein; putativ 18.8 76 0.0026 26.7 3.1 51 279-329 108-161 (171)
3 1rw2_A ATP-dependent DNA helic 10.7 4.2E+02 0.014 22.7 5.5 41 281-325 77-117 (152)
4 2es4_D Lipase chaperone; prote 9.3 1.1E+02 0.0039 29.3 1.6 26 157-182 15-41 (332)
5 1q2z_A ATP-dependent DNA helic 9.1 7E+02 0.024 20.2 6.1 41 281-325 46-86 (120)
6 3d85_C IL-23 subunit, interleu 8.5 1.8E+02 0.0062 25.8 2.4 24 42-65 65-88 (178)
7 3ups_A Iojap-like protein; PSI 7.6 88 0.003 26.7 -0.0 9 317-325 112-120 (136)
8 2id1_A Hypothetical protein; a 7.5 95 0.0032 26.3 0.2 7 319-325 98-104 (130)
9 2cuj_A Transcriptional adaptor 7.5 9E+02 0.031 19.6 8.0 50 208-257 46-103 (108)
10 2o5a_A BH1328 protein; BHR21, 7.4 1E+02 0.0036 25.8 0.4 10 316-325 95-104 (125)
No 1
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=23.38 E-value=1.4e+02 Score=26.97 Aligned_cols=83 Identities=12% Similarity=0.070 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHHHHHH---HhhccCCcccchhhhcccchhhhhhcCCC
Q 018424 262 MYNEFQKFALEDAAASYNYGIECLFRFYSYGLEKECREDLYKDFEQLT---LDFYHKGNLYGLEKYWYVLPAFAHFGNLG 338 (356)
Q Consensus 262 MY~EFR~lALEDa~~g~~yGLEcLfRFYsygLe~~fr~~ly~DF~~lt---l~d~~~g~lYGLEK~w~~l~af~~y~~~~ 338 (356)
+.+=-..+|..+-..||-.||..|-...=..+. .++.|-=|..+. +.+|-....-|+.+..+++...++
T Consensus 113 L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~---e~~aF~~l~~l~~~~l~~~~~~~~~~~~~~~~~l~~ll~----- 184 (292)
T 4hl4_A 113 LIDIILLILERNPQLHYYQGYHDIVVTFLLVVG---ERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIID----- 184 (292)
T ss_dssp HHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHC---HHHHHHHHHHHHHTTTTGGGCSSSCTTTGGGGGHHHHHH-----
T ss_pred HHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcC---HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-----
Confidence 333444455566667788888887766555542 123344444433 445544555566666644444433
Q ss_pred CCCchHHHHHhhhC
Q 018424 339 QNHLELDKFSLRHG 352 (356)
Q Consensus 339 ~~~p~l~~~l~~~~ 352 (356)
..+|+|.++|.+.+
T Consensus 185 ~~~P~L~~hL~~~~ 198 (292)
T 4hl4_A 185 QVNPELHDFMQSAE 198 (292)
T ss_dssp HHCHHHHHHHC-CC
T ss_pred HHCHHHHHHHHHcC
Confidence 26888888886643
No 2
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=18.83 E-value=76 Score=26.69 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=39.6
Q ss_pred hhhhHHHHHHHhhhhhhhhhHHH---HHHHHHHHHhhccCCcccchhhhcccch
Q 018424 279 NYGIECLFRFYSYGLEKECREDL---YKDFEQLTLDFYHKGNLYGLEKYWYVLP 329 (356)
Q Consensus 279 ~yGLEcLfRFYsygLe~~fr~~l---y~DF~~ltl~d~~~g~lYGLEK~w~~l~ 329 (356)
..++..=..-|+.++....|++| |.+|...+++.+..-..|+++|=|+..+
T Consensus 108 l~~~k~~l~~~s~a~~es~r~Dir~~f~~~~~~~~~~~~~i~~~m~~KGw~~~p 161 (171)
T 2rbd_A 108 SMDVAKGLVTCSQIIGQSIREDVALMFSQFHMAKVQFGGKMLKLNKNKGWLIPP 161 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 34455556678888888888886 7788888889999999999999994443
No 3
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=10.67 E-value=4.2e+02 Score=22.72 Aligned_cols=41 Identities=17% Similarity=0.443 Sum_probs=27.5
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccCCcccchhhhc
Q 018424 281 GIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYW 325 (356)
Q Consensus 281 GLEcLfRFYsygLe~~fr~~ly~DF~~ltl~d~~~g~lYGLEK~w 325 (356)
-+|||-.|=...+. .-.+..|.+|...-.+.+..+.+ .-||
T Consensus 77 A~ecL~~lR~~~i~-~~ep~~yN~Fl~~LK~~l~~~~l---~~FW 117 (152)
T 1rw2_A 77 SIDCIRAFREEAIK-FSEEQRFNNFLKALQEKVEIKQL---NHFW 117 (152)
T ss_dssp HHHHHHHHHHHHHH-HTCSHHHHHHHHHHHHHHHHSCC---HHHH
T ss_pred HHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHhhhH---HHHH
Confidence 56666544333322 12578899999888888877765 8899
No 4
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=9.30 E-value=1.1e+02 Score=29.31 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=0.0
Q ss_pred CccceeecCCCCCCCCC-CCCCCCCCC
Q 018424 157 NSVGYFFGSTPPENHGP-RPSKLSVSP 182 (356)
Q Consensus 157 ~~vgw~~~~~~~~~~~~-~~~~~~~s~ 182 (356)
+-+||-|...|.....+ ...+..+|.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (332)
T 2es4_D 15 HIEGRHMPAAPSPAPAGAVAGGPAAGV 41 (332)
T ss_dssp ---------------------------
T ss_pred ceeeeecCCCCccCCCCCCCCCccccC
Confidence 45799888887665533 333333333
No 5
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=9.07 E-value=7e+02 Score=20.15 Aligned_cols=41 Identities=17% Similarity=0.443 Sum_probs=28.1
Q ss_pred hhHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccCCcccchhhhc
Q 018424 281 GIECLFRFYSYGLEKECREDLYKDFEQLTLDFYHKGNLYGLEKYW 325 (356)
Q Consensus 281 GLEcLfRFYsygLe~~fr~~ly~DF~~ltl~d~~~g~lYGLEK~w 325 (356)
-+|||-.+=...+. .-.+..|.+|...-.+.+..+.+ .-||
T Consensus 46 a~ecl~~~R~~~i~-~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW 86 (120)
T 1q2z_A 46 SIDCIRAFREEAIK-FSEEQRFNNFLKALQEKVEIKQL---NHFW 86 (120)
T ss_dssp HHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHTTST---THHH
T ss_pred HHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHHHhhhH---HHHH
Confidence 56666554433332 12578999999888888877766 7899
No 6
>3d85_C IL-23 subunit, interleukin-23 subunit P19; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} PDB: 3d87_A* 3qwr_B* 3duh_C*
Probab=8.54 E-value=1.8e+02 Score=25.80 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=19.6
Q ss_pred cccHHHHHHhhhhhhhhHHhhhhh
Q 018424 42 SISNELASAINDGLYFFEQELKTK 65 (356)
Q Consensus 42 kis~ELas~INDGLy~YEqdLw~k 65 (356)
.-+|--.++|-.||.|||+.|...
T Consensus 65 dnsq~CLqRi~qgLvFY~~LLgSd 88 (178)
T 3d85_C 65 DNSQFCLQRIHQGLIFYEKLLGSD 88 (178)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTSH
T ss_pred cchHHHHHHHHHHHHHHHHHcccc
Confidence 446667899999999999988654
No 7
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=7.58 E-value=88 Score=26.69 Aligned_cols=9 Identities=44% Similarity=1.309 Sum_probs=7.2
Q ss_pred cccchhhhc
Q 018424 317 NLYGLEKYW 325 (356)
Q Consensus 317 ~lYGLEK~w 325 (356)
..|.||+||
T Consensus 112 efY~LE~LW 120 (136)
T 3ups_A 112 SFYNLERMW 120 (136)
T ss_dssp HHHHHHHHT
T ss_pred HHcCHHHHh
Confidence 458899999
No 8
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=7.48 E-value=95 Score=26.30 Aligned_cols=7 Identities=43% Similarity=1.336 Sum_probs=4.2
Q ss_pred cchhhhc
Q 018424 319 YGLEKYW 325 (356)
Q Consensus 319 YGLEK~w 325 (356)
|.||+||
T Consensus 98 Y~LE~LW 104 (130)
T 2id1_A 98 YDIEALW 104 (130)
T ss_dssp HCHHHHT
T ss_pred cCHHHHh
Confidence 5566666
No 9
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=7.46 E-value=9e+02 Score=19.60 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=35.8
Q ss_pred HHHhhhcCCchhhhHHHHHHHHHHHhhcCCCCchhhhhhH--------HHhhHHHHhh
Q 018424 208 HQLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLY--------RFWSYFLREM 257 (356)
Q Consensus 208 h~lL~engF~qq~Y~kfr~~cL~qRk~~g~G~s~EMntLY--------RFWS~FLr~n 257 (356)
.+|=.........|...+...+.|..+.|.=.-.+...|+ |.|-||+...
T Consensus 46 ~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kID~~K~~rIydff~~~G 103 (108)
T 2cuj_A 46 KELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREG 103 (108)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHHcC
Confidence 4666778999999999999999998766642334555554 5566666544
No 10
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=7.37 E-value=1e+02 Score=25.79 Aligned_cols=10 Identities=50% Similarity=1.062 Sum_probs=7.2
Q ss_pred Ccccchhhhc
Q 018424 316 GNLYGLEKYW 325 (356)
Q Consensus 316 g~lYGLEK~w 325 (356)
-..|.||+||
T Consensus 95 RefY~LE~LW 104 (125)
T 2o5a_A 95 RAYYNLEKLW 104 (125)
T ss_dssp GGGTSTTTCC
T ss_pred HhHcCHHHHh
Confidence 3467888888
Done!