Query 018424
Match_columns 356
No_of_seqs 109 out of 124
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 15:02:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018424.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018424hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qf8a_ g.41.4.1 (A:) Casein k 32.3 2.4 0.00018 35.7 -1.7 17 279-295 30-46 (173)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 11.3 45 0.0033 21.7 1.4 12 244-255 8-19 (37)
3 d1yb3a1 d.296.1.2 (A:2-167) Hy 7.9 38 0.0028 28.1 -0.1 38 297-337 81-118 (166)
4 d3euga_ c.18.1.1 (A:) Uracil-D 7.4 2E+02 0.014 24.2 4.4 32 19-50 53-88 (225)
5 d2hxma1 c.18.1.1 (A:82-304) Ur 7.0 1.1E+02 0.0081 25.8 2.6 33 19-51 57-93 (223)
6 d1jxha_ c.72.1.2 (A:) 4-amino- 6.8 61 0.0045 27.0 0.7 29 222-250 237-266 (266)
7 d1m15a1 a.83.1.1 (A:2-95) Argi 6.8 97 0.0071 23.2 1.8 18 300-317 75-92 (94)
8 d1e5da1 c.23.5.1 (A:251-402) R 6.6 1.4E+02 0.01 21.8 2.7 26 18-56 3-28 (152)
9 d2fgea2 d.185.1.1 (A:798-993) 6.4 1.6E+02 0.012 22.4 3.1 66 209-275 92-157 (196)
10 d1j23a_ c.52.1.20 (A:) Putativ 6.2 1E+02 0.0073 23.2 1.7 15 45-60 49-63 (131)
No 1
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.28 E-value=2.4 Score=35.68 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHhhhhhh
Q 018424 279 NYGIECLFRFYSYGLEK 295 (356)
Q Consensus 279 ~yGLEcLfRFYsygLe~ 295 (356)
.|||+..+.+|+..|+-
T Consensus 30 l~GL~~~v~~y~~al~~ 46 (173)
T d1qf8a_ 30 LTGLNEQVPHYRQALDM 46 (173)
T ss_dssp GTTGGGTSTTHHHHHHH
T ss_pred hcCchhccccHHHHHHH
Confidence 39999999999999874
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=11.30 E-value=45 Score=21.65 Aligned_cols=12 Identities=33% Similarity=1.060 Sum_probs=9.4
Q ss_pred hhhHHHhhHHHH
Q 018424 244 NTLYRFWSYFLR 255 (356)
Q Consensus 244 ntLYRFWS~FLr 255 (356)
-+||-||-||.-
T Consensus 8 l~ly~Fw~FFag 19 (37)
T d1eysh2 8 ITIWAFWLFFFG 19 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468999999853
No 3
>d1yb3a1 d.296.1.2 (A:2-167) Hypothetical protein PF0168 {Pyrococcus furiosus [TaxId: 2261]}
Probab=7.91 E-value=38 Score=28.09 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHhhccCCcccchhhhcccchhhhhhcCC
Q 018424 297 CREDLYKDFEQLTLDFYHKGNLYGLEKYWYVLPAFAHFGNL 337 (356)
Q Consensus 297 fr~~ly~DF~~ltl~d~~~g~lYGLEK~w~~l~af~~y~~~ 337 (356)
-+++|-+||..+.++.+.+...||.|-|- .-|+.+...
T Consensus 81 ~kE~lse~F~~~f~~~F~ksfIYG~EnFL---~DfYN~~~p 118 (166)
T d1yb3a1 81 PKEELSKEFIEDVIRAFEKLFIYGAENFL---EDFYNFEHP 118 (166)
T ss_dssp EGGGCCHHHHHHHHHHCSEEEEESSCTTT---CEEEETTSC
T ss_pred cHHHhhHHHHHHHHHHhhhhhhhhHHHHH---HHhhcccCC
Confidence 35678899999999999999999999764 556666554
No 4
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli [TaxId: 562]}
Probab=7.37 E-value=2e+02 Score=24.24 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=21.8
Q ss_pred ceEEEecCCCCCCCCCCCC--ccc--ccccHHHHHH
Q 018424 19 NVLNDLQNSWAVEGSKTGG--KGL--KSISNELASA 50 (356)
Q Consensus 19 KllIVTQ~~~~~kgdr~g~--~~~--~kis~ELas~ 50 (356)
|++|+=|+|++..+.-+|= ..+ .+++.-|-.+
T Consensus 53 KVVIlGQDPYh~~~~A~GLaFsv~~~~~~PpSL~NI 88 (225)
T d3euga_ 53 KVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNM 88 (225)
T ss_dssp CEEEEESSCCCSTTTCSSSTTCCCTTSCCCHHHHHH
T ss_pred eEEEEecCCCCcccceeeeeeeccCCCCCChhHHHH
Confidence 7899999999987766654 222 3566655444
No 5
>d2hxma1 c.18.1.1 (A:82-304) Uracil-DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.04 E-value=1.1e+02 Score=25.82 Aligned_cols=33 Identities=12% Similarity=-0.044 Sum_probs=22.0
Q ss_pred ceEEEecCCCCCCCCCCCC--cc--cccccHHHHHHh
Q 018424 19 NVLNDLQNSWAVEGSKTGG--KG--LKSISNELASAI 51 (356)
Q Consensus 19 KllIVTQ~~~~~kgdr~g~--~~--~~kis~ELas~I 51 (356)
|++|+=|+|++..|.-+|= .. ..+++.-|..++
T Consensus 57 KVVIlGQDPY~~~~~A~GlaFSv~~~~~~ppSL~NI~ 93 (223)
T d2hxma1 57 KVVILGQDPYHGPNQAHGLCFSVQRPVPPPPSLENIY 93 (223)
T ss_dssp CEEEEECSCCCSTTTCCSSTTCCCTTSCCCHHHHHHH
T ss_pred eEEEEeccCCccCCcceeeeeeccCCcccCccHHHHH
Confidence 7899999999987766654 22 235565555543
No 6
>d1jxha_ c.72.1.2 (A:) 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD) {Salmonella typhimurium [TaxId: 90371]}
Probab=6.81 E-value=61 Score=26.97 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhcCCCC-chhhhhhHHHh
Q 018424 222 LKFRKRCLNERKKLGIGC-SEEMNTLYRFW 250 (356)
Q Consensus 222 ~kfr~~cL~qRk~~g~G~-s~EMntLYRFW 250 (356)
.+|-.+||+.-.+.++|. .--++.+|+||
T Consensus 237 ~~~v~~~i~~s~~~~~G~g~gp~~h~~~~~ 266 (266)
T d1jxha_ 237 KAWLSAALAQADTLEVGKGIGPVHHFHAWW 266 (266)
T ss_dssp HHHHHHHHTTGGGCCCCSSSCBCCTTTTTC
T ss_pred HHHHHHHHHhCCCCCCCCcCCCchhhhhcC
Confidence 468889999877788875 33699999999
No 7
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=6.76 E-value=97 Score=23.23 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhhccCCc
Q 018424 300 DLYKDFEQLTLDFYHKGN 317 (356)
Q Consensus 300 ~ly~DF~~ltl~d~~~g~ 317 (356)
++|.+|-..+|+||+.|+
T Consensus 75 ~vF~~lFdpvI~dyHgg~ 92 (94)
T d1m15a1 75 RTFGPLFDPIIDDYHGGF 92 (94)
T ss_dssp HHTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 478888899999999886
No 8
>d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Probab=6.63 E-value=1.4e+02 Score=21.84 Aligned_cols=26 Identities=8% Similarity=0.165 Sum_probs=18.5
Q ss_pred cceEEEecCCCCCCCCCCCCcccccccHHHHHHhhhhhh
Q 018424 18 GNVLNDLQNSWAVEGSKTGGKGLKSISNELASAINDGLY 56 (356)
Q Consensus 18 nKllIVTQ~~~~~kgdr~g~~~~~kis~ELas~INDGLy 56 (356)
|||+||=-+ ..+-|..+|.+|-+||-
T Consensus 3 ~Ki~IiY~S-------------~tGnTe~~A~~Ia~~l~ 28 (152)
T d1e5da1 3 NKVVIFYDS-------------MWHSTEKMARVLAESFR 28 (152)
T ss_dssp SEEEEEECC-------------SSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEEC-------------CCcHHHHHHHHHHHHHh
Confidence 678888532 22347889999999886
No 9
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.37 E-value=1.6e+02 Score=22.42 Aligned_cols=66 Identities=9% Similarity=-0.120 Sum_probs=37.8
Q ss_pred HHhhhcCCchhhhHHHHHHHHHHHhhcCCCCchhhhhhHHHhhHHHHhhccHHHHHHHHHHHHHHhh
Q 018424 209 QLLEENGFRQQKYLKFRKRCLNERKKLGIGCSEEMNTLYRFWSYFLREMFIPSMYNEFQKFALEDAA 275 (356)
Q Consensus 209 ~lL~engF~qq~Y~kfr~~cL~qRk~~g~G~s~EMntLYRFWS~FLr~nFN~~MY~EFR~lALEDa~ 275 (356)
+.|++++++++-=...+..++..-. .....+..+..++.-|-+.+..++...+-++-+...+||..
T Consensus 92 ~~l~~~~~t~eeL~~ak~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~e~I~~VT~edi~ 157 (196)
T d2fgea2 92 DFLRGLDVDQETLTKAIIGTIGDVD-SYQLPDAKGYSSLLRHLLGVTDEERQRKREEILTTSLKDFK 157 (196)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhhh-cccchhHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCHHHHH
Confidence 5567888998888888888776532 12222333444443333344444445555555566777765
No 10
>d1j23a_ c.52.1.20 (A:) Putative ATP-dependent RNA helicase Hef, nuclease domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=6.22 E-value=1e+02 Score=23.23 Aligned_cols=15 Identities=47% Similarity=0.753 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhHH
Q 018424 45 NELASAINDGLYFFEQ 60 (356)
Q Consensus 45 ~ELas~INDGLy~YEq 60 (356)
.||++-|+|| +|+||
T Consensus 49 ~Dl~~Si~dg-R~~~Q 63 (131)
T d1j23a_ 49 NDLIQSIIDG-GLFDQ 63 (131)
T ss_dssp HHHHHHHHTT-CHHHH
T ss_pred hhhhhhhhcc-hHHHH
Done!