BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018426
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 166/331 (50%), Gaps = 18/331 (5%)
Query: 8 LSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVS-------KLPVIDMQXXXXXX 60
++V V+ LAK+ + +P YIR ++ +I +D + ++P ID++
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESI--NDVFLEEKKEDGPQVPTIDLKNIESDD 59
Query: 61 XXXXXXA--KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYW--QRP 116
+L A +WG ++NHG+ + +E+VKK +EFF+LS+EEK+KY Q
Sbjct: 60 EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT 119
Query: 117 GDVEGFGQSNVVSEEQKLDWSDTFIMISLPENXXXXXXXXXXXXXXXDTLEVYSMELKSL 176
G ++G+G + +L+W D F ++ PE + Y+ L+ L
Sbjct: 120 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 179
Query: 177 AMNLILKMGKVLNIKDQEMRN---FFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLT 233
A + + L ++ + E + M++NYYP CPQPE +G+ H+D LT
Sbjct: 180 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 239
Query: 234 ILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHER 293
+L N V GLQ+ + W+ +P++ V+++GD +EI++NGKY+SI HR VN R
Sbjct: 240 FILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 294 HSIAAFYYARYDGEVY-PASSLISENTPSLF 323
S A F D V P ++S +P+ F
Sbjct: 299 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKF 329
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 166/331 (50%), Gaps = 18/331 (5%)
Query: 8 LSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVS-------KLPVIDMQXXXXXX 60
++V V+ LAK+ + +P YIR ++ +I +D + ++P ID++
Sbjct: 1 VAVERVESLAKSGIISIPKEYIRPKEELESI--NDVFLEEKKEDGPQVPTIDLKNIESDD 58
Query: 61 XXXXXXA--KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYW--QRP 116
+L A +WG ++NHG+ + +E+VKK +EFF+LS+EEK+KY Q
Sbjct: 59 EKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQAT 118
Query: 117 GDVEGFGQSNVVSEEQKLDWSDTFIMISLPENXXXXXXXXXXXXXXXDTLEVYSMELKSL 176
G ++G+G + +L+W D F ++ PE + Y+ L+ L
Sbjct: 119 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 178
Query: 177 AMNLILKMGKVLNIKDQEMRN---FFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLT 233
A + + L ++ + E + M++NYYP CPQPE +G+ H+D LT
Sbjct: 179 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALT 238
Query: 234 ILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHER 293
+L N V GLQ+ + W+ +P++ V+++GD +EI++NGKY+SI HR VN R
Sbjct: 239 FILH-NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 297
Query: 294 HSIAAFYYARYDGEVY-PASSLISENTPSLF 323
S A F D V P ++S +P+ F
Sbjct: 298 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKF 328
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 98/331 (29%), Positives = 162/331 (48%), Gaps = 18/331 (5%)
Query: 8 LSVPCVQELAKNATLVVPPRYIRADQDATTIISDDALVS-------KLPVIDMQXXXXXX 60
++V V+ LAK+ + +P YIR ++ +I +D + ++P ID++
Sbjct: 2 VAVERVESLAKSGIISIPKEYIRPKEELESI--NDVFLEEKKEDGPQVPTIDLKNIESDD 59
Query: 61 XXXXXXA--KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYW--QRP 116
+L A +WG ++NHG+ + E+VKK +EFF+LS+EEK+KY Q
Sbjct: 60 EKIRENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQAT 119
Query: 117 GDVEGFGQSNVVSEEQKLDWSDTFIMISLPENXXXXXXXXXXXXXXXDTLEVYSMELKSL 176
G ++G+G + +L+W D F ++ PE + Y+ L+ L
Sbjct: 120 GKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLL 179
Query: 177 AMNLILKMGKVLNIKDQEMRN---FFENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLT 233
A + + L ++ + E + ++NYYP CPQPE +G+ H+D LT
Sbjct: 180 ATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALT 239
Query: 234 ILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHER 293
+L N V GLQ+ + W+ +P++ V ++GD +EI++NGKY+SI HR VN R
Sbjct: 240 FILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 294 HSIAAFYYARYDGEVY-PASSLISENTPSLF 323
S A F D V P +S +P+ F
Sbjct: 299 ISWAVFCEPPKDKIVLKPLPEXVSVESPAKF 329
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 129/252 (51%), Gaps = 10/252 (3%)
Query: 69 LDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNVV 128
+ AC+ WGFF++VNHG+ + V+K + + E++ K +EG V
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEG-----VQ 78
Query: 129 SEEQKLDWSDTFIMISLPENXXXXXXXXXXXXXXXDTLEVYSMELKSLAMNLILKMGKVL 188
+E DW TF + LP + ++ L+ LA L+ + + L
Sbjct: 79 AEVTDXDWESTFFLKHLP--ISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENL 136
Query: 189 NIKDQEMRNFFENGMQV---MRMNYYPPCPQPEKVVGLTPHSDGCGLTILLQINEVEGLQ 245
++ ++N F +++ YPPCP+P+ + GL H+D G+ +L Q ++V GLQ
Sbjct: 137 GLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQ 196
Query: 246 IKKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERHSIAAFYYARYD 305
+ KD WI + P ++ VVN+GD +E+ITNGKY+S+ HR R S+A+FY D
Sbjct: 197 LLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSD 256
Query: 306 GEVYPASSLISE 317
+YPA +L+ +
Sbjct: 257 AVIYPAPALVEK 268
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 19/245 (7%)
Query: 68 KLDSACKEWGFFQMVNHGVSSAFLEKVKKEVQEFFNLSMEEKKKYWQRPGDVEGFGQSNV 127
+L ++ + +GF + ++ + A ++ + FF L +E KK+Y G G+ V
Sbjct: 25 ELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPFGV 84
Query: 128 VSEEQKLDWSDTFIMISLPENXXXXXXXXXXXXXXXDT-----LEVYSMELKSLAMNLIL 182
+ + +D + + D + + ++ L +L
Sbjct: 85 ETAKG----ADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDG 140
Query: 183 KMGKVLNIKDQEM---RNFF----ENGMQVMRMNYYPPCPQPEKVVGLTPHSDGCGLTIL 235
GKVL + R+FF ++G V+R+ +YPP P+ V H D +T+L
Sbjct: 141 XGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLL 200
Query: 236 LQINEVEGLQI-KKDRMWIPLTPLPNAFVVNVGDIMEIITNGKYRSIEHRATVNSVHERH 294
L E GL++ +D W+P+ P P V+N+GD +E +TN S HR VN ER
Sbjct: 201 LGAEE-GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERR 258
Query: 295 SIAAF 299
+ +
Sbjct: 259 GVPRY 263
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 51/280 (18%)
Query: 68 KLDSACKEWGFFQMVNHGVSSAFLEKVKKEV------QEFFNLSMEEKKK---------- 111
++D+A ++ GFF VNHG++ L + KE +E ++L++ K
Sbjct: 31 QIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGY 90
Query: 112 YWQRPGD--VEGFG--QSNVVSEEQKLDWSDTFIMISLPENXXXXXXXXXXXXXXXDTLE 167
Y PG VE F N + + I P + D E
Sbjct: 91 YLSIPGKKAVESFCYLNPNFTPDHPR-------IQAKTPTHEVNVWPDETKHPGFQDFAE 143
Query: 168 VYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQ---------VMRMNYYPPCPQPE 218
Y ++ L+ L+ G L + +E NFF + ++R Y P P+
Sbjct: 144 QYYWDVFGLSSALL--KGYALALGKEE--NFFARHFKPDDTLASVVLIRYPYLDPYPEAA 199
Query: 219 -------KVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIME 271
+ H D +T+L Q N V+ LQ++ + + +++N G M
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMA 258
Query: 272 IITNGKYRSIEHRAT-VNSVHERHSIAAFYYARYDGEVYP 310
+TN Y++ HR VN+ ER S+ F YD + P
Sbjct: 259 HLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 51/280 (18%)
Query: 68 KLDSACKEWGFFQMVNHGVSSAFLEKVKKEV------QEFFNLSMEEKKK---------- 111
++D+A ++ GFF VNHG++ L + KE +E ++L++ K
Sbjct: 31 QIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPEEKWDLAIRAYNKEHQDQVRAGY 90
Query: 112 YWQRPGD--VEGFG--QSNVVSEEQKLDWSDTFIMISLPENXXXXXXXXXXXXXXXDTLE 167
Y PG VE F N + + I P + D E
Sbjct: 91 YLSIPGKKAVESFCYLNPNFTPDHPR-------IQAKTPTHEVNVWPDETKHPGFQDFAE 143
Query: 168 VYSMELKSLAMNLILKMGKVLNIKDQEMRNFFENGMQ---------VMRMNYYPPCPQPE 218
Y ++ L+ L+ G L + +E NFF + ++R Y P P+
Sbjct: 144 QYYWDVFGLSSALL--KGYALALGKEE--NFFARHFKPDDTLASVVLIRYPYLDPYPEAA 199
Query: 219 -------KVVGLTPHSDGCGLTILLQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIME 271
+ H D +T+L Q N V+ LQ++ + + +++N G M
Sbjct: 200 IKTAADGTKLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMA 258
Query: 272 IITNGKYRSIEHRAT-VNSVHERHSIAAFYYARYDGEVYP 310
+TN Y++ HR VN+ ER S+ F YD + P
Sbjct: 259 HLTNNYYKAPIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 205 VMRMNYYPPCPQPEK--VVGLTPHSDGCGLTILLQINEVEGLQIK-KDRMWIPLTPLPNA 261
++R+ +YPP E+ + H D +T+L NE GLQ+K KD W+ +
Sbjct: 151 LLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGN 209
Query: 262 FVVNVGDIMEIITNGKYRSIEHR 284
++N+GD ++ ++G + S HR
Sbjct: 210 IIINIGDXLQEASDGYFPSTSHR 232
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 205 VMRMNYYPPCPQ----PEKVVGLTPHSDGCGLTILLQINEVEG---LQIKKDRMWIPLTP 257
++R Y+P P+ E+ + + PH D +T++ Q G LQ + + L
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 258 LPNAFVVNVGDIMEIITNGKYRSIEH 283
P+A +V G I ++T G+ ++ H
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 205 VMRMNYYPPCPQ----PEKVVGLTPHSDGCGLTILLQINEVEG---LQIKKDRMWIPLTP 257
++R Y+P P+ E+ + + PH D +T++ Q G LQ + + L
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 258 LPNAFVVNVGDIMEIITNGKYRSIEH 283
P+A +V G I ++T G+ ++ H
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 205 VMRMNYYPPCPQ----PEKVVGLTPHSDGCGLTILLQINEVEG---LQIKKDRMWIPLTP 257
++R Y+P P+ E+ + + PH D +T++ Q G LQ + + L
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 258 LPNAFVVNVGDIMEIITNGKYRSIEH 283
P+A +V G I ++T G+ ++ H
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 205 VMRMNYYPPCPQ----PEKVVGLTPHSDGCGLTILLQINEVEG---LQIKKDRMWIPLTP 257
++R Y+P P+ E+ + + PH D +T++ Q G LQ + + L
Sbjct: 158 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 217
Query: 258 LPNAFVVNVGDIMEIITNGKYRSIEH 283
P+A +V G I ++T G+ ++ H
Sbjct: 218 RPDAVLVFCGAIATLVTGGQVKAPRH 243
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 205 VMRMNYYPPCPQ----PEKVVGLTPHSDGCGLTILLQINEVEG---LQIKKDRMWIPLTP 257
++R Y+P P+ E+ + + PH D +T++ Q G LQ + + L
Sbjct: 178 LLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPY 237
Query: 258 LPNAFVVNVGDIMEIITNGKYRSIEH 283
P+A +V G I ++T G+ ++ H
Sbjct: 238 RPDAVLVFCGAIATLVTGGQVKAPRH 263
>pdb|1IR6|A Chain A, Crystal Structure Of Exonuclease Recj Bound To Manganese
Length = 424
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 194 EMRNFFENGMQVMRMNYYPP--CPQPEKVV--GLTP----HSDGCGLTILLQINEVEGLQ 245
E+R ENG++V+ +++ P P P VV LTP G G+ LL L
Sbjct: 105 ELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLL-------LW 157
Query: 246 IKKDRMWIPLTPLPNAFVVNVGDIMEI 272
+R+ +P PL A + VG I ++
Sbjct: 158 ALHERLGLP-PPLEYADLAAVGTIADV 183
>pdb|2ZXO|A Chain A, Crystal Structure Of Recj From Thermus Thermophilus Hb8
pdb|2ZXP|A Chain A, Crystal Structure Of Recj In Complex With Mn2+ From
Thermus Thermophilus Hb8
pdb|2ZXR|A Chain A, Crystal Structure Of Recj In Complex With Mg2+ From
Thermus Thermophilus Hb8
Length = 666
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 194 EMRNFFENGMQVMRMNYYPP--CPQPEKVV--GLTP----HSDGCGLTILLQINEVEGLQ 245
E+R ENG++V+ +++ P P P VV LTP G G+ LL L
Sbjct: 144 ELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLL-------LW 196
Query: 246 IKKDRMWIPLTPLPNAFVVNVGDIMEI 272
+R+ +P PL A + VG I ++
Sbjct: 197 ALHERLGLP-PPLEYADLAAVGTIADV 222
>pdb|4GI5|A Chain A, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
pdb|4GI5|B Chain B, Crystal Structure Of A Putative Quinone Reductase From
Klebsiella Pneumoniae (Target Psi-013613)
Length = 280
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 98 VQEFFNLSMEEKKKYWQRPGDVEGFGQSNVVSEEQKLDWSDTFIM 142
V EF+ +++ K+ + +G +++V+E++KL W+DT I
Sbjct: 80 VGEFWRPTLDSKQAF------AQGTQSADIVAEQEKLLWADTVIF 118
>pdb|2IXA|A Chain A, A-Zyme, N-Acetylgalactosaminidase
pdb|2IXB|A Chain A, Crystal Structure Of N-Acetylgalactosaminidase In Complex
With Galnac
Length = 444
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 236 LQINEVEGLQIKKDRMWIPLTPLPNAFVVNVGDIMEI--ITNGKYRSIEHRATVN 288
++ NE L + W +TPL + G + EI TNGK+++ ++ +N
Sbjct: 387 IKRNEAFPLDVYDLATWYSITPLSEKSIAENGAVQEIPDFTNGKWKNAKNTFAIN 441
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,296,836
Number of Sequences: 62578
Number of extensions: 341671
Number of successful extensions: 775
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 750
Number of HSP's gapped (non-prelim): 28
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)