Citrus Sinensis ID: 018427

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350------
MELDVKQKVNKRSKLEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL
cccccccccccccccccccccccccccccHHHHHHHccccccccEEEEEEccccHHHHHccccHHccccccccccccccccccccccccccccEEEEcccccccccccccEEEcccccccccccEEEEEEEEEccccccccccEEEEEEccccEEEEEcccccEEEccccccccccccccEEEcccEEEEEEccccccccEEEEEEccccEEEEEccccccccccccEEEEEEccEEEEEEEccccEEEEEEEEcccccccEEEEEEEccccccccccccccccccccccccccEEEEEEEEEccEEEEEEcccEEEEEEccccEEEEEEEEcccccEEEEEEEcccccccccccc
cccccccccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccEEEEEccccccccEEEEEccccccccccccEEEEEccccccccEEEEEEEEEEccccccccccccEEEccccEEEEEEccccccEEccccccccccccccEEEccEEEEEEEcccccccEEEEEEEcccccEcEccccccccccccEEEEEEEccEEEEEEEcccccEEEEEEEEcccccccEEEEEEcccccccccccccccEEEEEccccccEEEEEEEEcccEEEEEEcccEEEEEEccccEEEEEEEccccccEEEEEEEcccccccccccc
MELDVKQKVnkrskleddhqqatgmetLPREIVLHILLRLPITSLVQFKFVCRAWRALAqdpllanlhnttstskaeknpclilhcdfpirnqlcfidfsdnqdkypdqevvfgfgfhpvskeYKVIKIVYYRkscsnssfqrtrrviyprsdvqvytvgspawrskgklAYQFVRRPSEALVKGrlhwvtrprryspvrgiVSFDIADeqfrevpkpdcgglnrcnyHLTVLSGCLSVavygnygkLEIWVMKDYNvkeswakelnigayipkglkqsldrplkiwknslngRVVRVVCILEKGEILLEYKSRvlvsydpkrrtfnefvfkgtpnwFQTIVHQgsfnwidtphdl
meldvkqkvnkrskleddhqqatgmeTLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNttstskaeknpCLILHCDFPIRNQLCFIDFSDNQDKYPDQEVVFGFGFHPVSKEYKVIKIVYYrkscsnssfqrtrrviyprsdvqvytvgspawrskgklayqfvrrpsealvkgrlhwvtrprryspvrGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKiwknslngrvvRVVCILEkgeilleyksrvlvsydpkRRTFNEFVFKGTPNWFQTIVHqgsfnwidTPHDL
MELDVKQKVNKRSKLEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL
***************************LPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTS***AEKNPCLILHCDFPIRNQLCFIDFSDNQDKYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWID*****
****************************PREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFN*ID*****
********************QATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL
***********************GMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWID*****
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MELDVKQKVNKRSKLEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query356 2.2.26 [Sep-21-2011]
Q9SFC7417 F-box protein At3g07870 O yes no 0.918 0.784 0.498 1e-104
Q9LIR8364 F-box/kelch-repeat protei no no 0.632 0.618 0.246 3e-13
Q9SU30413 F-box protein CPR30 OS=Ar no no 0.581 0.501 0.272 1e-12
Q8GXC7427 F-box/kelch-repeat protei no no 0.376 0.313 0.278 2e-09
Q9SUY0402 F-box protein At4g22390 O no no 0.404 0.358 0.238 2e-07
Q9ZNQ3347 F-box/LRR-repeat/kelch-re no no 0.620 0.636 0.214 4e-07
Q9LU24360 Putative F-box protein At no no 0.477 0.472 0.221 7e-07
Q9FGS3357 Putative F-box protein At no no 0.758 0.756 0.224 7e-07
Q9SZR7283 Putative F-box protein At no no 0.612 0.770 0.233 6e-06
Q9LTC3362 Putative F-box protein At no no 0.668 0.657 0.229 9e-06
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function desciption
 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/397 (49%), Positives = 253/397 (63%), Gaps = 70/397 (17%)

Query: 25  METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLIL 84
           +E+LP +I+  I  RLPI+S+ +  FVCR+WR++     L      +S+S +   PCL+L
Sbjct: 25  LESLPEDIIADIFSRLPISSIARLMFVCRSWRSV-----LTQHGRLSSSSSSPTKPCLLL 79

Query: 85  HCDFPIRNQ--------------------------------------LCFID-------- 98
           HCD PIRN                                       LC  D        
Sbjct: 80  HCDSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLY 139

Query: 99  ----FSDNQ-------DKYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSS--FQRTR 145
               F+ N        +KY DQE+VFGFGFH ++KEYKV+KIVY+R S SN++  ++   
Sbjct: 140 LYNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRG 199

Query: 146 RVIYPRSDVQVYTVGSP------AWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPV 199
           R+ Y +S+VQ+ T+ S       +WRS GK  Y+FV+R SEALV GRLH+VTRPRR+ P 
Sbjct: 200 RIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPD 259

Query: 200 RGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVK 259
           R  VSFD+ DE+F+E+PKPDCGGLNR N+ L  L GCL   VYGNYGKL+IWVMK Y VK
Sbjct: 260 RKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVK 319

Query: 260 ESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSY 319
           ESW KE +IG Y+PKGLKQ+LDRP+ IWKN+ NG+VVRV+C+LE GEILLEYKSRVLV+Y
Sbjct: 320 ESWGKEYSIGTYLPKGLKQNLDRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAY 379

Query: 320 DPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHDL 356
           DPK   F + +F G PNWF T+VH G+ +W DTP DL
Sbjct: 380 DPKLGKFKDLLFHGLPNWFHTVVHAGTLSWFDTPLDL 416

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function description
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 Back     alignment and function description
>sp|Q9ZNQ3|FBLK3_ARATH F-box/LRR-repeat/kelch-repeat protein At2g27520 OS=Arabidopsis thaliana GN=At2g27520 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9FGS3|FB287_ARATH Putative F-box protein At5g50220 OS=Arabidopsis thaliana GN=At5g50220 PE=4 SV=1 Back     alignment and function description
>sp|Q9SZR7|FB247_ARATH Putative F-box protein At4g29970 OS=Arabidopsis thaliana GN=At4g29970 PE=4 SV=1 Back     alignment and function description
>sp|Q9LTC3|FB179_ARATH Putative F-box protein At3g23260 OS=Arabidopsis thaliana GN=At3g23260 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
224064862408 f-box family protein [Populus trichocarp 0.983 0.857 0.576 1e-127
224129122422 f-box family protein [Populus trichocarp 0.985 0.831 0.571 1e-125
225447272409 PREDICTED: F-box protein At3g07870 [Viti 0.969 0.843 0.536 1e-110
297829344415 F-box family protein [Arabidopsis lyrata 0.971 0.833 0.484 1e-104
18398079417 F-box protein [Arabidopsis thaliana] gi| 0.918 0.784 0.498 1e-102
255583020263 conserved hypothetical protein [Ricinus 0.705 0.954 0.673 1e-100
255588135383 conserved hypothetical protein [Ricinus 0.896 0.832 0.419 4e-75
449445682375 PREDICTED: F-box protein At3g07870-like 0.882 0.837 0.411 2e-74
255552822401 conserved hypothetical protein [Ricinus 0.898 0.798 0.379 1e-59
224125804310 f-box family protein [Populus trichocarp 0.75 0.861 0.429 2e-56
>gi|224064862|ref|XP_002301588.1| f-box family protein [Populus trichocarpa] gi|222843314|gb|EEE80861.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/413 (57%), Positives = 282/413 (68%), Gaps = 63/413 (15%)

Query: 1   MELDVKQKVNKR-SKLEDDHQQATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALA 59
           M+LD ++   +R +KLEDD  Q TGME LPREI   IL RLPITSLV+FK VCRAWRA+A
Sbjct: 1   MDLDFERHSKRRKTKLEDD-PQTTGMELLPREIAQDILSRLPITSLVKFKCVCRAWRAMA 59

Query: 60  QDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQ-------------------------- 93
            DP + NL+ + ST   E +PC+ILHCDFPIRN                           
Sbjct: 60  LDPEVVNLYLSCSTQ--ETDPCVILHCDFPIRNNLYFVDFAAHEEEKEKVKRIRAPFSSM 117

Query: 94  -------------LCFID--FSDN----------------QDKYPDQEVVFGFGFHPVSK 122
                        LC  D  F+D+                  +YPDQEVVFGFGF+P + 
Sbjct: 118 MPEFEVVGSCNGLLCLSDSLFNDSLYIYNPFTGRYKELPKSLQYPDQEVVFGFGFNPKTN 177

Query: 123 EYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEAL 182
           EYKVI+IVYYR    +  + R+RR+IYP S VQ+ T+G P WRS GK++Y+ VRR SE L
Sbjct: 178 EYKVIRIVYYRNG--HGRYPRSRRIIYPLSQVQILTLGCPGWRSLGKVSYRLVRRASETL 235

Query: 183 VKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVY 242
           V GRLHWV+RP R  P R +VSFD+ DEQFREVPKPDCGGLNRC+YHL VL GCLSVAVY
Sbjct: 236 VNGRLHWVSRPCRNKPARRLVSFDLTDEQFREVPKPDCGGLNRCDYHLAVLRGCLSVAVY 295

Query: 243 GNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCIL 302
            NYG+LEIWVMK+YNVKESW KE NIGAY+PKGLKQ+L RPLKIWKN+ NGR VR +C+L
Sbjct: 296 CNYGRLEIWVMKEYNVKESWVKEYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVL 355

Query: 303 EKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQTIVHQGSFNWIDTPHD 355
           + GEILLEYK+R LVSYDPK+  F +   +GTP WFQT+VH GS NWIDTP D
Sbjct: 356 KNGEILLEYKNRALVSYDPKKGKFKDIDLQGTPKWFQTVVHVGSLNWIDTPSD 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224129122|ref|XP_002320506.1| f-box family protein [Populus trichocarpa] gi|222861279|gb|EEE98821.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447272|ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera] gi|147785390|emb|CAN68678.1| hypothetical protein VITISV_041941 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297829344|ref|XP_002882554.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297328394|gb|EFH58813.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18398079|ref|NP_566322.1| F-box protein [Arabidopsis thaliana] gi|75265789|sp|Q9SFC7.1|FB135_ARATH RecName: Full=F-box protein At3g07870 gi|6648199|gb|AAF21197.1|AC013483_21 unknown protein [Arabidopsis thaliana] gi|15983479|gb|AAL11607.1|AF424614_1 AT3g07870/F17A17_21 [Arabidopsis thaliana] gi|109134141|gb|ABG25068.1| At3g07870 [Arabidopsis thaliana] gi|332641092|gb|AEE74613.1| F-box protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255583020|ref|XP_002532278.1| conserved hypothetical protein [Ricinus communis] gi|223528012|gb|EEF30093.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|255588135|ref|XP_002534512.1| conserved hypothetical protein [Ricinus communis] gi|223525141|gb|EEF27869.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449445682|ref|XP_004140601.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus] gi|449519392|ref|XP_004166719.1| PREDICTED: F-box protein At3g07870-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255552822|ref|XP_002517454.1| conserved hypothetical protein [Ricinus communis] gi|223543465|gb|EEF44996.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224125804|ref|XP_002319679.1| f-box family protein [Populus trichocarpa] gi|222858055|gb|EEE95602.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query356
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.853 0.729 0.547 8.3e-90
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.429 0.420 0.267 3.7e-17
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.570 0.491 0.285 1.9e-14
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.398 0.332 0.294 5.5e-14
TAIR|locus:2031845435 AT1G13200 "AT1G13200" [Arabido 0.508 0.416 0.241 1.8e-08
TAIR|locus:2127465402 AT4G22390 "AT4G22390" [Arabido 0.438 0.388 0.247 5.5e-08
TAIR|locus:2119772431 AT4G19930 "AT4G19930" [Arabido 0.603 0.498 0.219 5.7e-08
TAIR|locus:2076151402 AT3G23960 "AT3G23960" [Arabido 0.384 0.340 0.296 6.9e-08
TAIR|locus:2084923390 AT3G04660 "AT3G04660" [Arabido 0.547 0.5 0.245 1e-07
TAIR|locus:2086243362 AT3G23260 "AT3G23260" [Arabido 0.424 0.417 0.258 1.9e-07
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 173/316 (54%), Positives = 224/316 (70%)

Query:    49 KFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFSDNQDKYPD 108
             KF  R   ++ +  ++ + +     S +  N  L L+  F   +    ++  +  +KY D
Sbjct:   105 KFTLRFASSMPEFDVVGSCNGLLCLSDSLYNDSLYLYNPFTTNS----LELPECSNKYHD 160

Query:   109 QEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSS-FQRTR-RVIYPRSDVQVYTVGSP---- 162
             QE+VFGFGFH ++KEYKV+KIVY+R S SN++   R R R+ Y +S+VQ+ T+ S     
Sbjct:   161 QELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRGRIQYKQSEVQILTLSSKTTDQ 220

Query:   163 --AWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDC 220
               +WRS GK  Y+FV+R SEALV GRLH+VTRPRR+ P R  VSFD+ DE+F+E+PKPDC
Sbjct:   221 SLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRRHVPDRKFVSFDLEDEEFKEIPKPDC 280

Query:   221 GGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSL 280
             GGLNR N+ L  L GCL   VYGNYGKL+IWVMK Y VKESW KE +IG Y+PKGLKQ+L
Sbjct:   281 GGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGVKESWGKEYSIGTYLPKGLKQNL 340

Query:   281 DRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEFVFKGTPNWFQT 340
             DRP+ IWKN+ NG+VVRV+C+LE GEILLEYKSRVLV+YDPK   F + +F G PNWF T
Sbjct:   341 DRPMWIWKNAENGKVVRVLCLLENGEILLEYKSRVLVAYDPKLGKFKDLLFHGLPNWFHT 400

Query:   341 IVHQGSFNWIDTPHDL 356
             +VH G+ +W DTP DL
Sbjct:   401 VVHAGTLSWFDTPLDL 416
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009506 "plasmodesma" evidence=IDA
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031845 AT1G13200 "AT1G13200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119772 AT4G19930 "AT4G19930" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076151 AT3G23960 "AT3G23960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084923 AT3G04660 "AT3G04660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086243 AT3G23260 "AT3G23260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_II000988
f-box family protein (384 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 9e-16
pfam1293747 pfam12937, F-box-like, F-box-like 3e-08
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 2e-06
pfam0064648 pfam00646, F-box, F-box domain 3e-06
pfam08268125 pfam08268, FBA_3, F-box associated domain 0.004
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 75.1 bits (185), Expect = 9e-16
 Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 37/217 (17%)

Query: 113 FGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAY 172
           +  G+ P+ K+YKV+                 R     +S+ QVYT+GS +WR+  + + 
Sbjct: 44  YFLGYDPIEKQYKVLCFSD-------------RSGNRNQSEHQVYTLGSNSWRTI-ECSP 89

Query: 173 QFVRRPSEAL-VKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYH-L 230
                 S  + + G L+++    + +P   IVSFD++ E+F+E     CG  +  +Y  L
Sbjct: 90  PHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSL 149

Query: 231 TVLSGCLSVAVYGNYG-KLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKN 289
               G L+V          ++WV+ D   K+ W+K   +              P+    +
Sbjct: 150 INYKGKLAVLKQKKDTNNFDLWVLNDAG-KQEWSKLFTV--------------PIPPLPD 194

Query: 290 SLNGRVVRVVCILEKGEILLEY---KSRVLVSYDPKR 323
            +      +    +KGEI+L         +  Y+   
Sbjct: 195 LV--DDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE 229

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|219769 pfam08268, FBA_3, F-box associated domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 356
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 99.96
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.78
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.78
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.02
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.93
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.75
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.72
PLN02193470 nitrile-specifier protein 98.13
PHA02713557 hypothetical protein; Provisional 98.13
PHA02713557 hypothetical protein; Provisional 98.06
PLN02153341 epithiospecifier protein 98.03
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.93
PHA03098534 kelch-like protein; Provisional 97.89
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 97.85
PHA02790480 Kelch-like protein; Provisional 97.8
PHA03098534 kelch-like protein; Provisional 97.79
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 97.77
PLN02153341 epithiospecifier protein 97.75
PHA02790480 Kelch-like protein; Provisional 97.72
PLN02193470 nitrile-specifier protein 97.66
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 97.57
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.55
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 97.51
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 97.36
TIGR03547 346 muta_rot_YjhT mutatrotase, YjhT family. Members of 96.94
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 96.91
KOG0281499 consensus Beta-TrCP (transducin repeats containing 95.99
KOG4693392 consensus Uncharacterized conserved protein, conta 95.94
KOG2997366 consensus F-box protein FBX9 [General function pre 95.88
KOG4693392 consensus Uncharacterized conserved protein, conta 95.04
PF1396450 Kelch_6: Kelch motif 95.01
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 93.65
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 92.96
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 91.42
KOG1230 521 consensus Protein containing repeated kelch motifs 91.34
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 90.01
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 89.96
KOG1230 521 consensus Protein containing repeated kelch motifs 88.27
KOG4341483 consensus F-box protein containing LRR [General fu 86.77
PF1396450 Kelch_6: Kelch motif 85.95
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 83.87
PLN02772 398 guanylate kinase 81.56
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=99.96  E-value=2.4e-27  Score=208.27  Aligned_cols=183  Identities=24%  Similarity=0.379  Sum_probs=135.5

Q ss_pred             EEEEeeeCCCCCeEEEEEEEeecCCCCCccccccccccCCceEEEEEcCCCCceecCCCCceeecCCCceEEcceEEEEe
Q 018427          112 VFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVT  191 (356)
Q Consensus       112 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lywl~  191 (356)
                      .+|||||+.+++||||++......   .          ....++||++++++||.+...+........+|++||++||++
T Consensus        43 ~~~~G~d~~~~~YKVv~~~~~~~~---~----------~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~  109 (230)
T TIGR01640        43 TYFLGYDPIEKQYKVLCFSDRSGN---R----------NQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLA  109 (230)
T ss_pred             eEEEeecccCCcEEEEEEEeecCC---C----------CCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEE
Confidence            579999999999999999753210   0          146899999999999998743333232334999999999999


Q ss_pred             ccCCCCCccEEEEEECCCceee-eeCCCCCCCCCcceeeEEEECCeEEEEEecC-CCeEEEEEeccCCCCcceeeEEEEc
Q 018427          192 RPRRYSPVRGIVSFDIADEQFR-EVPKPDCGGLNRCNYHLTVLSGCLSVAVYGN-YGKLEIWVMKDYNVKESWAKELNIG  269 (356)
Q Consensus       192 ~~~~~~~~~~Il~fDl~~e~f~-~i~~P~~~~~~~~~~~l~~~~g~L~~~~~~~-~~~~~iW~L~~~g~~~~W~~~~~I~  269 (356)
                      ..........|++||+++|+|+ .+++|...........|++++|+||++.... ...++||+|++++ +++|+++++|+
T Consensus       110 ~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~-~~~W~k~~~i~  188 (230)
T TIGR01640       110 YTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAG-KQEWSKLFTVP  188 (230)
T ss_pred             EECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEEEECCCC-CCceeEEEEEc
Confidence            7522112238999999999999 5999875432223468999999999998753 3569999999997 45699999998


Q ss_pred             cCCCcCccccCCCcchhhcccCCCceeEEEEEecCCeEEEEEcC--cE-EEEEeCCCC
Q 018427          270 AYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKS--RV-LVSYDPKRR  324 (356)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~--~~-l~~Yd~~~~  324 (356)
                      .....++               . ....++++.++|+|++...+  +. ++.||++++
T Consensus       189 ~~~~~~~---------------~-~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       189 IPPLPDL---------------V-DDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGEN  230 (230)
T ss_pred             Ccchhhh---------------h-hheeEeEEeeCCEEEEEeCCCCceEEEEEeccCC
Confidence            6211110               0 11558899999999998764  44 999999874

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query356
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 9e-08
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 8e-07
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 8e-07
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-06
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 4e-04
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
 Score = 47.2 bits (113), Expect = 9e-08
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 26 ETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64
          ++LP E++L I   L +  L++   VC+ W  LA D  L
Sbjct: 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.2
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.17
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.39
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.35
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.29
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.28
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.27
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.17
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 98.13
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 98.12
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.09
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.03
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.02
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 97.94
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 97.94
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 97.85
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.69
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 97.65
2uvk_A 357 YJHT; unknown function, hypothetical protein, sial 97.6
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.59
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.54
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.4
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.22
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 97.04
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 96.48
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.4
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 95.82
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 84.94
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
Probab=99.20  E-value=5.9e-12  Score=111.59  Aligned_cols=50  Identities=30%  Similarity=0.550  Sum_probs=46.9

Q ss_pred             cCCCCCCCcHHHHHHHHccCCccccc-ceeecchhhhhhcCCHHHHHHhhc
Q 018427           21 QATGMETLPREIVLHILLRLPITSLV-QFKFVCRAWRALAQDPLLANLHNT   70 (356)
Q Consensus        21 ~~~~~~~Lp~Dll~eIL~RLP~~sl~-r~r~VcK~W~~li~~~~F~~~~~~   70 (356)
                      .+..+..||+||+.+||+|||+++|+ ||++|||+|++||+++.|.+.|+.
T Consensus        47 ~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~   97 (297)
T 2e31_A           47 AVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQ   97 (297)
T ss_dssp             CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHH
T ss_pred             cccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhh
Confidence            34578899999999999999999999 999999999999999999999986
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 356
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 2e-10
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 2e-06
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 4e-06
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 0.001
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (128), Expect = 2e-10
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 26 ETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL 64
          ++LP E++L I   L +  L++   VC+ W  LA D  L
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query356
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.29
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.65
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.5
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.22
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 97.16
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 96.69
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 95.12
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 94.38
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.7e-13  Score=80.75  Aligned_cols=40  Identities=35%  Similarity=0.624  Sum_probs=37.3

Q ss_pred             CCCCcHHHHHHHHccCCcccccceeecchhhhhhcCCHHH
Q 018427           25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLL   64 (356)
Q Consensus        25 ~~~Lp~Dll~eIL~RLP~~sl~r~r~VcK~W~~li~~~~F   64 (356)
                      ++.||+|++.+||++||+++|+|+++|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            3579999999999999999999999999999999999864
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure