BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018428
(356 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BFX|A Chain A, The Solution Nmr Structure Of The B Form Of Oxidized Rat
Microsomal Cytochrome B5, Minimized Average Structure
Length = 99
Score = 32.0 bits (71), Expect = 0.61, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 35 QAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILES--- 91
+ + KDV E+++ HKD +S W +L + + D FL HP +++L
Sbjct: 3 EQSDKDVKYYTLEEIQKHKDSKSTWVIL------HHKVYDLTKFLEEHPGGEEVLREQAG 56
Query: 92 -DRNLETEDIANALLSKNL 109
D ED+ ++ ++ L
Sbjct: 57 GDATENFEDVGHSTDAREL 75
>pdb|1I87|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1I8C|A Chain A, Solution Structure Of The Water-Soluble Fragment Of Rat
Hepatic Apocytochrome B5
pdb|1IET|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, Minimized Average
Structure
pdb|1IEU|A Chain A, Apocytochrome B5, Ph 6.2, 298 K, Nmr, 10 Structures
Length = 98
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 35 QAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILES--- 91
+ + KDV E+++ HKD +S W +L + + D FL HP +++L
Sbjct: 2 EQSDKDVKYYTLEEIQKHKDSKSTWVIL------HHKVYDLTKFLEEHPGGEEVLREQAG 55
Query: 92 -DRNLETEDIANALLSKNL 109
D ED+ ++ ++ L
Sbjct: 56 GDATENFEDVGHSTDAREL 74
>pdb|1BLV|A Chain A, Solution Structure Of Oxidized Rat Microsomal Cytochrome
B5 In The Presence Of 2 M Guanidinium Chloride:
Monitoring The Early Steps In Protein Unfolding
pdb|1AW3|A Chain A, The Solution Nmr Structure Of Oxidized Rat Microsomal
Cytochrome B5, Minimized Average Structure
pdb|1AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 19 Structures
pdb|1B5A|A Chain A, Rat Ferrocytochrome B5 A Conformation, Nmr, 1 Structure
pdb|1B5B|A Chain A, Rat Ferrocytochrome B5 B Conformation, Nmr, 1 Structure
Length = 94
Score = 31.2 bits (69), Expect = 0.84, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 39 KDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILES----DRN 94
KDV E+++ HKD +S W +L + + D FL HP +++L D
Sbjct: 2 KDVKYYTLEEIQKHKDSKSTWVIL------HHKVYDLTKFLEEHPGGEEVLREQAGGDAT 55
Query: 95 LETEDIANALLSKNL 109
ED+ ++ ++ L
Sbjct: 56 ENFEDVGHSTDAREL 70
>pdb|1AQA|A Chain A, Solution Structure Of Reduced Microsomal Rat Cytochrome
B5, Nmr, Minimized Average Structure
pdb|1MNY|A Chain A, Dimethyl Propionate Ester Heme-Containing Cytochrome B5
pdb|2AXX|A Chain A, The Solution Structure Of Oxidized Rat Microsomal
Cytochrome B5, Nmr, 21 Structures
Length = 94
Score = 31.2 bits (69), Expect = 0.91, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 39 KDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILES----DRN 94
KDV E+++ HKD +S W +L + + D FL HP +++L D
Sbjct: 2 KDVKYYTLEEIQKHKDSKSTWVIL------HHKVYDLTKFLEEHPGGEEVLREQAGGDAT 55
Query: 95 LETEDIANALLSKNL 109
ED+ ++ ++ L
Sbjct: 56 ENFEDVGHSTDAREL 70
>pdb|1JEX|A Chain A, Solution Structure Of A67v Mutant Of Rat Ferro
Cytochrome B5
Length = 94
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 39 KDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDIL 89
KDV E+++ HKD +S W +L + + D FL HP +++L
Sbjct: 2 KDVKYYTLEEIQKHKDSKSTWVIL------HHKVYDLTKFLEEHPGGEEVL 46
>pdb|1IB7|A Chain A, Solution Structure Of F35y Mutant Of Rat Ferro Cytochrome
B5, A Conformation, Ensemble Of 20 Structures
Length = 94
Score = 30.0 bits (66), Expect = 1.9, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 39 KDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILES----DRN 94
KDV E+++ HKD +S W +L + + D +L HP +++L D
Sbjct: 2 KDVKYYTLEEIQKHKDSKSTWVIL------HHKVYDLTKYLEEHPGGEEVLREQAGGDAT 55
Query: 95 LETEDIANALLSKNL 109
ED+ ++ ++ L
Sbjct: 56 ENFEDVGHSTDAREL 70
>pdb|4G2C|A Chain A, Dyp2 From Amycolatopsis Sp. Atcc 39116
pdb|4G2C|B Chain B, Dyp2 From Amycolatopsis Sp. Atcc 39116
Length = 493
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 2 KKSGAAEKKRVRRSSAVVQNGTR------DPNSDTPPRKQAAKKDVFQLF 45
+ SG AE R + + G DPN+D PPR + A KDV LF
Sbjct: 357 RGSGGAEAPEEERKHLMARRGQTYGRRHDDPNADLPPRLRPA-KDVGLLF 405
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,900,641
Number of Sequences: 62578
Number of extensions: 359562
Number of successful extensions: 731
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 17
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)