BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018428
(356 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99161|SEC62_YARLI Translocation protein SEC62 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=SEC62 PE=3 SV=2
Length = 396
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 15/209 (7%)
Query: 46 AEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFL--------RNHPEVKDILESDRNLET 97
A+ +R HK L+ R +L R ++FR K + L ++ P K + RN E
Sbjct: 30 ADYLRSHKLLKQRPGILNGKRSDFFRVKRAIRALEDPKYKQLQSKPNSKLPPINSRN-EA 88
Query: 98 EDIANALLSKNLLVRCDRV-VKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKG 156
I + + +R D++ +T K+K L++ P+Q F D D ++ W F
Sbjct: 89 ISIFRLMPINQMALRVDKLPTQTALMMKQKPEQGVPVLQVNPQQEFGD-DMYYTW-FYNP 146
Query: 157 RPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLI---LSLLFVRAAIFGM 213
PL L A LFP++P + + Y G+L LI + VR IF +
Sbjct: 147 VPLTTYLYGALGVAAIFAGVLFPLWPIFLRQGVWYLSVGMLGLIGVFFGIALVRLVIFVL 206
Query: 214 IWILLGKRVWFFPNILAEEATLRELFRFW 242
W + +W FPN+ A+ + W
Sbjct: 207 TWPTVKPGIWIFPNLFADVGFVDSFIPLW 235
>sp|O13787|SEC62_SCHPO Translocation protein sec62 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sec62 PE=3 SV=1
Length = 273
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 27 NSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHP--- 83
+S+ P K K F ++ +L+++ A+L RV YFR K + FL +
Sbjct: 3 SSNVPVLKDEDKCKFSMRFTNFLKSRPELKTKPAILNGKRVYYFRVKRVLRFLTSEAYTP 62
Query: 84 -EVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVF 142
+ K E E ++ L+ ++LVR D++ R K+KL L+I Q F
Sbjct: 63 KKYKGFPEISSREEAIEVLKLLIMNSMLVRVDKLPPKQR--KQKL----VELQINRNQDF 116
Query: 143 SDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILY---SCAGVLLL 199
D D + W +E P L+ + ++ LA+ LFP++P + Y GV+ L
Sbjct: 117 QD-DMHYVWLYEP-LPKRVMALAVLFALVVLALVLFPLWPMFMRKGAWYLSMGGLGVIGL 174
Query: 200 ILSLLFVRAAIFGMIWILLGKRVWFFPNILAE 231
L+ +R +F + +++ +W FPN+LA+
Sbjct: 175 FFVLVILRFFLFCITAVIVRPGIWLFPNLLAD 206
>sp|Q8BU14|SEC62_MOUSE Translocation protein SEC62 OS=Mus musculus GN=Sec62 PE=1 SV=1
Length = 398
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 134 LEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSC 193
LE +QVF D + F W ++ + ++ + +A LFP++P ++ + Y
Sbjct: 170 LEPHDDQVFLDGNEVFVWIYDPVH-IKTFVMGLILVIAVIAATLFPLWPAEMRVGVYYLS 228
Query: 194 AGVLLLILSLLFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
G + S+L + R +F +IW++ G R WF PN+ A+
Sbjct: 229 VGAGCFVASILLLAIARCILFLIIWLITGGRHHFWFLPNLTAD 271
>sp|Q5R4Q3|SEC62_PONAB Translocation protein SEC62 OS=Pongo abelii GN=SEC62 PE=2 SV=1
Length = 399
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 134 LEIFPEQVFSDNDAFFAWTFEKGRPL-WQT-LLSFFWPVLTLAICLFPVYPHRCKLLILY 191
LE +QVF D + + W ++ P+ ++T ++ + +A LFP++P ++ + Y
Sbjct: 170 LEPHDDQVFLDGNEVYVWIYD---PVHFKTFVMGLILVIAVIAATLFPLWPAEMRVGVYY 226
Query: 192 SCAGVLLLILSLLFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
G + S+L + R +F +IW++ G R WF PN+ A+
Sbjct: 227 LSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTAD 271
>sp|Q99442|SEC62_HUMAN Translocation protein SEC62 OS=Homo sapiens GN=SEC62 PE=1 SV=1
Length = 399
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 10/105 (9%)
Query: 134 LEIFPEQVFSDNDAFFAWTFEKGRPL-WQT-LLSFFWPVLTLAICLFPVYPHRCKLLILY 191
LE +QVF D + + W ++ P+ ++T ++ + +A LFP++P ++ + Y
Sbjct: 170 LEPHDDQVFLDGNEVYVWIYD---PVHFKTFVMGLILVIAVIAATLFPLWPAEMRVGVYY 226
Query: 192 SCAGVLLLILSLLFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
G + S+L + R +F +IW++ G R WF PN+ A+
Sbjct: 227 LSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTAD 271
>sp|Q5F3A1|SEC62_CHICK Translocation protein SEC62 OS=Gallus gallus GN=SEC62 PE=2 SV=1
Length = 398
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 134 LEIFPEQVFSDNDAFFAWTFEKGRPL-WQTL-LSFFWPVLTLAICLFPVYPHRCKLLILY 191
LE +QVF D + + W ++ P+ ++T + + +A LFP++P ++ + Y
Sbjct: 170 LEPHEDQVFLDGNEVYVWIYD---PVHFKTFAMGLVLVIAVIAATLFPLWPAEMRVGVYY 226
Query: 192 SCAGVLLLILSLLFV---RAAIFGMIWILLGKR--VWFFPNILAE 231
G + S+L + R +F +IW++ G R WF PN+ A+
Sbjct: 227 LSVGAGCFVASILLLAVARCILFLIIWLITGGRHHFWFLPNLTAD 271
>sp|Q5AI21|SEC62_CANAL Translocation protein SEC62 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=SEC62 PE=3 SV=1
Length = 293
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 30/206 (14%)
Query: 55 LESRWAVLQETR-VEYFRGKDFVSFL--------RNHPEVKDILESDRNLETEDIANALL 105
L+ R +L T +E+FR K L + +P+ ++ N + + + L+
Sbjct: 37 LKQRTGLLDNTNDIEFFRFKRLQRALLSDDYKQKQQNPK-NGLIPVANNEDVQKVFVLLI 95
Query: 106 SKNLLVRCDRV-------VKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRP 158
LL+ ++ VK +P K+K + A ++ D D ++ W ++K P
Sbjct: 96 QNQLLLPLQKLHYAEVKAVKGWKPNKEKPTLKRA------DKAVMDPDVYYGWLYQKPNP 149
Query: 159 LWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWIL- 217
+ L SF A+ LFP++P+ K + Y G L LI +L F A + +I+I+
Sbjct: 150 -YILLYSFLAIAGVFAVILFPLWPNFMKRGVWYLSMGALGLI-ALFFATAIVRLIIYIIS 207
Query: 218 ---LGKRVWFFPNILAEEATLRELFR 240
K W FPN+ E+ + E F+
Sbjct: 208 LVAFPKPFWLFPNLF-EDCGVIESFQ 232
>sp|Q75D26|SEC62_ASHGO Translocation protein SEC62 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC62 PE=3 SV=2
Length = 244
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 24/215 (11%)
Query: 46 AEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRN---------HPEVKDILESDRNLE 96
A +R HK+L+ R + Q +E+FR K FV L + PE + S+ +
Sbjct: 11 ATLLRHHKELKQRQGMFQSRHMEFFRFKRFVRALNSDEYRAKSEREPEKYPPVRSEED-- 68
Query: 97 TEDIANALLSKNLLVRCDRV--VKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFE 154
D+ +L+ L++ C ++ + G +P HL + + D D ++ WT
Sbjct: 69 ARDVFVSLIKAQLVLPCTKLHTAQCREHGLAPSKDYP-HL-LLSTKATLDADEYYVWT-H 125
Query: 155 KGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLL---LILSLLFVRAAIF 211
+ L L V LA +P++PH K ++ Y G+L + +L VR I+
Sbjct: 126 NPKTLTDYLTVVGVIVGILAFVCYPLWPHSMKRVVYYLSLGLLGLLAVFSALALVRFVIY 185
Query: 212 GMIWILLGKR--VWFFPNILAEE---ATLRELFRF 241
+ +R W FPN+ + A+ + L+ F
Sbjct: 186 VLSLAFCSERGGFWIFPNLFEDCGVIASFKPLYGF 220
>sp|P21825|SEC62_YEAST Translocation protein SEC62 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC62 PE=1 SV=2
Length = 274
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 27/216 (12%)
Query: 46 AEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRN---------HPEVKDILESDR--- 93
A +R+HK+L+ R + Q + ++FR K FV L + PE+ + S++
Sbjct: 23 ATLLRNHKELKQRQGLFQAKQTDFFRYKRFVRALHSEEYANKSARQPEIYPTIPSNKIED 82
Query: 94 NLETEDIANALLSKNLLVRCDRV--VKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAW 151
L++ +I L+ +++ ++ + G K +P HL I + + D +F W
Sbjct: 83 QLKSREIFIQLIKAQMVIPVKKLHSQECKEHGLKPSKDFP-HL-IVSNKAQLEADEYFVW 140
Query: 152 TFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIF 211
+ R L+ + LA+ +P++P + Y G ++ F AI
Sbjct: 141 NYNP-RTYMDYLIVIGVVSIILALVCYPLWPRSMRRGSYYVSLGAFGILAG--FFAVAIL 197
Query: 212 GMIWILLGKRV-------WFFPNILAEEATLRELFR 240
+I +L V W FPN+ E+ + E F+
Sbjct: 198 RLILYVLSLIVYKDVGGFWIFPNLF-EDCGVLESFK 232
>sp|Q6CLZ9|SEC62_KLULA Translocation protein SEC62 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=SEC62 PE=3 SV=1
Length = 246
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 88/219 (40%), Gaps = 38/219 (17%)
Query: 46 AEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRN---------HPEVKDILESDRNLE 96
A +R H DL+ R + Q V++FR K FV L++ PE+ + SD
Sbjct: 13 ANLLRTHSDLKQRQGLFQSRLVDFFRYKRFVRALKSDKYKAKSKKQPELYPAVTSD---- 68
Query: 97 TEDIANALLSKNLLVRCDRVVKTLR--------PGKKKLSTWPAHLEIFPEQVFSDNDAF 148
ED N +S L++ VV ++ G K ++P L + D +
Sbjct: 69 -EDARNIFVS---LIKAQFVVPAVKLHSAECKEHGLKPNKSYPNLL--LSNKATLQPDEY 122
Query: 149 FAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRA 208
+ W++ + ++ L V LA +P++P K Y L LI +F
Sbjct: 123 YVWSYNP-KSIYDYLTVIGIIVGVLAFVCYPLWPPYMKRGTYYLSIAALALI--GVFFGI 179
Query: 209 AIFGMIWILLG-------KRVWFFPNILAEEATLRELFR 240
AI +I LL W FPN+ E+ + E F+
Sbjct: 180 AIVRLIVYLLSLAAVSEKGGFWLFPNLF-EDCGVIESFK 217
>sp|P00173|CYB5_RAT Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2
Length = 134
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 17/106 (16%)
Query: 35 QAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILE---- 90
+ + KDV E+++ HKD +S W +L + + D FL HP +++L
Sbjct: 3 EQSDKDVKYYTLEEIQKHKDSKSTWVIL------HHKVYDLTKFLEEHPGGEEVLREQAG 56
Query: 91 SDRNLETEDIANAL----LSKNLLV---RCDRVVKTLRPGKKKLST 129
D ED+ ++ LSK ++ D K +P + ++T
Sbjct: 57 GDATENFEDVGHSTDARELSKTYIIGELHPDDRSKIAKPSETLITT 102
>sp|P56395|CYB5_MOUSE Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2
Length = 134
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 37 AKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILE----SD 92
+ KDV E+++ HKD +S W +L + + D FL HP +++L D
Sbjct: 5 SDKDVKYYTLEEIQKHKDSKSTWVIL------HHKVYDLTKFLEEHPGGEEVLREQAGGD 58
Query: 93 RNLETEDIANALLSKNL 109
ED+ ++ ++ L
Sbjct: 59 ATENFEDVGHSTDAREL 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,489,970
Number of Sequences: 539616
Number of extensions: 5424164
Number of successful extensions: 14250
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 14241
Number of HSP's gapped (non-prelim): 25
length of query: 356
length of database: 191,569,459
effective HSP length: 118
effective length of query: 238
effective length of database: 127,894,771
effective search space: 30438955498
effective search space used: 30438955498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)