Query 018428
Match_columns 356
No_of_seqs 132 out of 181
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:56:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00869 sec62 protein transl 100.0 4.2E-66 9.2E-71 483.1 19.1 196 49-247 1-208 (232)
2 PF03839 Sec62: Translocation 100.0 2.1E-54 4.6E-59 403.4 14.2 181 65-246 1-201 (224)
3 KOG2927 Membrane component of 100.0 7.2E-55 1.6E-59 424.6 8.8 294 7-314 36-336 (372)
4 COG5232 SEC62 Preprotein trans 100.0 1.4E-50 3E-55 372.9 5.1 198 40-245 26-238 (259)
5 PF00610 DEP: Domain found in 96.2 0.022 4.8E-07 43.8 7.3 47 65-115 13-59 (74)
6 cd04450 DEP_RGS7-like DEP (Dis 95.8 0.026 5.6E-07 45.9 6.1 63 48-116 6-69 (88)
7 cd04449 DEP_DEPDC5-like DEP (D 95.7 0.033 7.2E-07 44.9 6.4 67 43-115 2-70 (83)
8 KOG2927 Membrane component of 95.7 0.009 2E-07 60.2 3.5 81 35-118 14-98 (372)
9 cd04441 DEP_2_DEP6 DEP (Dishev 95.5 0.028 6E-07 46.2 5.2 57 52-115 16-72 (85)
10 cd04438 DEP_dishevelled DEP (D 95.5 0.024 5.3E-07 46.2 4.8 60 51-115 10-70 (84)
11 cd04439 DEP_1_P-Rex DEP (Dishe 95.3 0.035 7.7E-07 44.9 5.0 43 67-115 26-68 (81)
12 cd04443 DEP_GPR155 DEP (Dishev 95.2 0.032 6.9E-07 45.4 4.7 43 67-115 28-70 (83)
13 smart00049 DEP Domain found in 95.2 0.053 1.1E-06 42.1 5.7 44 66-115 17-60 (77)
14 cd04448 DEP_PIKfyve DEP (Dishe 95.2 0.032 6.9E-07 45.1 4.4 43 67-115 26-68 (81)
15 cd04371 DEP DEP domain, named 95.1 0.086 1.9E-06 40.9 6.5 42 68-115 27-68 (81)
16 cd04440 DEP_2_P-Rex DEP (Dishe 94.6 0.074 1.6E-06 44.5 5.3 42 68-115 36-77 (93)
17 cd04442 DEP_1_DEP6 DEP (Dishev 94.6 0.069 1.5E-06 43.5 4.9 42 68-115 27-68 (82)
18 cd04437 DEP_Epac DEP (Dishevel 94.5 0.15 3.3E-06 44.7 7.1 84 44-156 4-89 (125)
19 cd04446 DEP_DEPDC4 DEP (Dishev 93.5 0.19 4.1E-06 42.2 5.7 70 44-116 3-76 (95)
20 cd04444 DEP_PLEK2 DEP (Disheve 91.5 0.26 5.6E-06 42.4 4.0 69 43-117 3-73 (109)
21 cd04445 DEP_PLEK1 DEP (Disheve 88.3 0.62 1.3E-05 39.5 3.7 60 52-117 13-73 (99)
22 cd04436 DEP_fRgd2 DEP (Disheve 81.3 3.2 7E-05 34.3 4.8 57 54-116 14-70 (84)
23 cd04447 DEP_BRCC3 DEP (Disheve 74.1 4.5 9.8E-05 34.0 3.8 66 44-113 5-74 (92)
24 KOG1962 B-cell receptor-associ 69.3 15 0.00033 35.2 6.6 30 160-190 2-32 (216)
25 KOG3571 Dishevelled 3 and rela 68.2 3.9 8.3E-05 43.8 2.6 60 68-156 421-480 (626)
26 PF14715 FixP_N: N-terminal do 57.5 14 0.0003 27.8 3.2 27 158-184 22-48 (51)
27 PF11752 DUF3309: Protein of u 54.6 15 0.00033 27.6 3.0 25 168-193 6-30 (49)
28 PRK12438 hypothetical protein; 54.3 5.9 0.00013 45.3 1.2 35 185-219 40-74 (991)
29 PRK00068 hypothetical protein; 47.1 7.4 0.00016 44.5 0.5 31 186-216 39-69 (970)
30 PF11395 DUF2873: Protein of u 46.8 35 0.00076 24.6 3.7 25 189-215 8-32 (43)
31 PRK05978 hypothetical protein; 46.1 74 0.0016 28.8 6.6 50 158-212 72-123 (148)
32 PF04277 OAD_gamma: Oxaloaceta 44.1 58 0.0013 25.4 5.0 30 187-216 3-32 (79)
33 TIGR00782 ccoP cytochrome c ox 43.7 25 0.00053 34.2 3.5 27 158-184 28-54 (285)
34 KOG3814 Signaling protein van 42.8 34 0.00073 35.9 4.4 21 162-182 118-139 (531)
35 COG4459 NapE Periplasmic nitra 41.2 37 0.00081 26.5 3.4 20 170-200 24-43 (62)
36 PF03699 UPF0182: Uncharacteri 40.8 37 0.00081 38.1 4.7 32 188-219 30-61 (774)
37 PF05297 Herpes_LMP1: Herpesvi 38.7 10 0.00022 38.2 0.0 31 149-181 96-127 (381)
38 TIGR03074 PQQ_membr_DH membran 37.8 69 0.0015 35.9 6.2 13 218-230 51-64 (764)
39 PF07314 DUF1461: Protein of u 37.2 1.6E+02 0.0035 26.9 7.5 12 217-228 157-169 (181)
40 cd08763 Cyt_b561_CYB561 Verteb 37.1 91 0.002 27.8 5.7 67 162-229 12-106 (143)
41 TIGR00816 tdt C4-dicarboxylate 35.9 81 0.0018 30.8 5.7 55 159-214 5-61 (320)
42 PF03595 SLAC1: Voltage-depend 35.8 80 0.0017 30.5 5.7 44 169-212 13-61 (330)
43 PF03169 OPT: OPT oligopeptide 35.7 64 0.0014 34.7 5.4 55 149-205 347-402 (624)
44 PF11057 Cortexin: Cortexin of 34.1 40 0.00087 27.7 2.7 21 190-210 30-50 (81)
45 PF07254 DUF1434: Protein of u 33.8 1.8E+02 0.0039 25.8 7.0 27 158-184 11-37 (132)
46 PRK15087 hemolysin; Provisiona 33.3 1.3E+02 0.0028 28.4 6.4 44 159-202 111-156 (219)
47 PF14110 DUF4282: Domain of un 32.8 1.1E+02 0.0025 24.8 5.3 22 189-210 49-70 (90)
48 PF09788 Tmemb_55A: Transmembr 32.7 42 0.0009 33.1 3.1 39 173-211 212-250 (256)
49 PF11241 DUF3043: Protein of u 32.5 1.1E+02 0.0023 28.5 5.5 15 162-176 80-94 (170)
50 PHA02828 putative transmembran 32.0 85 0.0018 26.6 4.3 41 187-228 10-51 (100)
51 PRK11513 cytochrome b561; Prov 31.9 1.2E+02 0.0025 27.6 5.7 57 153-212 5-64 (176)
52 KOG2348 Urea transporter [Amin 31.8 44 0.00096 36.0 3.3 30 168-199 599-628 (667)
53 PHA02726 hypothetical protein; 31.7 87 0.0019 26.4 4.3 33 187-220 10-42 (94)
54 COG1615 Uncharacterized conser 31.5 49 0.0011 37.3 3.7 46 179-224 21-66 (885)
55 PF07301 DUF1453: Protein of u 31.3 21 0.00045 32.4 0.7 68 146-213 43-112 (148)
56 PF02411 MerT: MerT mercuric t 31.2 1.1E+02 0.0024 26.6 5.1 58 159-225 8-69 (116)
57 KOG1362 Choline transporter-li 30.5 1.3E+02 0.0028 32.9 6.6 70 160-232 149-220 (577)
58 PF02077 SURF4: SURF4 family; 29.0 5.8E+02 0.013 25.3 10.5 59 166-226 161-224 (267)
59 PLN02250 lipid phosphate phosp 28.7 6.2E+02 0.013 25.5 14.7 52 162-220 72-123 (314)
60 PRK10171 hydrogenase 1 b-type 27.6 4.4E+02 0.0095 24.9 9.0 32 146-177 7-38 (235)
61 KOG1821 Uncharacterized conser 27.3 24 0.00051 37.2 0.4 15 179-193 84-98 (662)
62 COG1272 Predicted membrane pro 27.1 1.2E+02 0.0026 29.3 5.1 39 168-208 128-167 (226)
63 COG4993 Gcd Glucose dehydrogen 27.0 1.6E+02 0.0035 32.9 6.5 46 161-206 3-48 (773)
64 PF15145 DUF4577: Domain of un 26.7 59 0.0013 28.6 2.6 18 198-215 70-87 (128)
65 PF07297 DPM2: Dolichol phosph 24.7 1.1E+02 0.0025 24.9 3.8 13 229-241 31-43 (78)
66 TIGR03142 cytochro_ccmI cytoch 23.8 49 0.0011 28.1 1.7 21 162-182 3-23 (117)
67 PLN02505 omega-6 fatty acid de 22.9 2E+02 0.0043 29.7 6.1 14 177-190 73-86 (381)
68 COG1622 CyoA Heme/copper-type 22.5 2.4E+02 0.0052 27.4 6.3 24 165-188 4-27 (247)
69 PF13807 GNVR: G-rich domain o 22.2 1.3E+02 0.0027 23.8 3.6 19 155-173 53-71 (82)
70 PF09726 Macoilin: Transmembra 22.1 2.5E+02 0.0053 31.4 7.0 20 174-193 45-67 (697)
71 KOG3059 N-acetylglucosaminyltr 21.9 1.1E+02 0.0023 30.8 3.8 46 169-214 199-252 (292)
72 PF06638 Strabismus: Strabismu 21.8 94 0.002 33.4 3.6 22 203-225 163-184 (505)
73 PRK12361 hypothetical protein; 21.4 2.1E+02 0.0046 30.2 6.2 16 245-260 58-73 (547)
74 PRK12878 ubiA 4-hydroxybenzoat 21.3 2.3E+02 0.005 28.1 6.1 14 40-53 28-41 (314)
75 PRK06231 F0F1 ATP synthase sub 21.1 3.1E+02 0.0067 25.6 6.5 18 163-180 15-32 (205)
76 PF06781 UPF0233: Uncharacteri 21.1 2.7E+02 0.0058 23.2 5.4 46 158-203 31-80 (87)
77 PF13347 MFS_2: MFS/sugar tran 20.7 1.7E+02 0.0037 28.9 5.0 72 168-239 267-350 (428)
78 PF11511 RhodobacterPufX: Intr 20.6 1.6E+02 0.0035 23.6 3.8 23 187-209 26-48 (67)
79 PF05529 Bap31: B-cell recepto 20.5 4.7E+02 0.01 23.7 7.5 29 160-189 5-34 (192)
80 PF01578 Cytochrom_C_asm: Cyto 20.1 1.8E+02 0.004 26.4 4.8 28 182-209 182-209 (214)
No 1
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=100.00 E-value=4.2e-66 Score=483.12 Aligned_cols=196 Identities=26% Similarity=0.493 Sum_probs=173.4
Q ss_pred HhcCCCCccceeeecCceEeEeehHHHHHHHhcCcccc-----cc-cc--CCChHHHHHHHHHHHhcCceeeeecccc-c
Q 018428 49 VRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVK-----DI-LE--SDRNLETEDIANALLSKNLLVRCDRVVK-T 119 (356)
Q Consensus 49 LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~-----~~-L~--~dr~~~a~~~~~~LL~~~~~~Rv~K~~~-~ 119 (356)
||+|++||+|+|+++|+|||||||+||||||+++++.+ +. +. +++ .+++++++.||+++|++||+|+++ +
T Consensus 1 lr~~k~lk~R~~il~g~rVeyFRgkr~vraL~s~~y~~~~~k~~~~lp~i~~r-~da~~~~~~Li~~~l~~R~~k~~~~~ 79 (232)
T TIGR00869 1 LRSHKELKQRPGILNGKRTDFFRVKRFVRALHSEEYANKSAKQPEIYPTIPSR-LEAIEIFILLIKNQMVIRVDKLPSQE 79 (232)
T ss_pred CCCCCCCCcceeeecCceeEEeeHHHHHHHHhCcHhhhhcccCcccCCCCCCH-HHHHHHHHHHHHcCCEEEEEeccccc
Confidence 79999999999999999999999999999999876542 11 21 234 499999999999999999999986 4
Q ss_pred cCCCCCCCCCCCcceeecCCcccCCCCceEEEEecCCccHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHHH-
Q 018428 120 LRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLL- 198 (356)
Q Consensus 120 ~~pgK~K~~K~P~~L~i~~~Q~F~d~d~yYvW~Ye~~~~~~~~l~~~lliv~ilai~LFPLWP~~~R~gVwYLSvglLg- 198 (356)
.+++++|++|++.+|+++++|.|+ +|+||+|+|||+ |+++++++++++++++|+|||||||.+||+||||+|+|+||
T Consensus 80 ~~~~~kkp~k~~p~L~i~~~Q~Fd-~d~~YvW~ye~~-~~~~~l~~~~~~~~ila~~lFPlWP~~~r~gv~YlS~~~lgl 157 (232)
T TIGR00869 80 CKEHKQKPSQDFPHLQVNNKQQFE-DDMYYVWNYNPR-PYMDYLIVILVVSIILALVLFPLWPRFMRRGSWYLSLGALGI 157 (232)
T ss_pred ccccccCccCCCcceEeccccccC-CCceEEEEecCC-cHHHHHHHHHHHHHHHHHhhcccChHHHhHhHHHHHHHHHHH
Confidence 555555555565699999999995 699999999996 78999999999999999999999999999999999986555
Q ss_pred --HHHHHHHHHHHHHHHHHHHhCCceeeccccccccccchhccccCCCCcc
Q 018428 199 --LILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKKDE 247 (356)
Q Consensus 199 --l~f~laIvRlILF~itw~~~g~~fWLFPNLFeD~~~~~sffp~w~~~d~ 247 (356)
+||+++|+|+|+|+|+|+++|++||||||||||||+++||.|+|.+.+.
T Consensus 158 l~~~~~laivRlilF~i~~~~~g~~fWlfPNLfeD~Gf~eSF~Ply~~~~~ 208 (232)
T TIGR00869 158 IGGFFAVAILRLILFVLTLIVVKPGIWIFPNLFADVGFLDSFKPLWGWHEK 208 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCeeeecchhcccCcceeeccceecccC
Confidence 5799999999999999999999999999999999999999999998554
No 2
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=100.00 E-value=2.1e-54 Score=403.44 Aligned_cols=181 Identities=31% Similarity=0.609 Sum_probs=151.8
Q ss_pred ceEeEeehHHHHHHHhcCcc----------ccccccCCC---hHHHHHHHHHHHhcCceeeeecc-ccc-cCCCCCCCCC
Q 018428 65 TRVEYFRGKDFVSFLRNHPE----------VKDILESDR---NLETEDIANALLSKNLLVRCDRV-VKT-LRPGKKKLST 129 (356)
Q Consensus 65 krVdyFRGkraVraL~~~p~----------~~~~L~~dr---~~~a~~~~~~LL~~~~~~Rv~K~-~~~-~~pgK~K~~K 129 (356)
+|+|||||||++|+|++..+ +.+...+++ ..+++++++.|+++++++|++|. +.. .+..++|+++
T Consensus 1 ~~~~ffR~Kr~~ral~s~~~k~~k~k~~~~l~~~~~~~k~~~~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~k~~k 80 (224)
T PF03839_consen 1 KRKDFFRAKRFVRALQSDAYKKKKSKKKPELKPVKKSDKIKDREEAEEIFKELIKKQLIVRVEKELHTHEPKKHKKKKKK 80 (224)
T ss_pred CCccchHHHHHHHHhhChhhhhhhhccCcccCCcccccchhhhhhhhhhhhhcchhhhhcccccccCcccccCcCccccC
Confidence 58999999999999985433 221111111 24788999999999999999994 431 2233444456
Q ss_pred CCcceeecCCcccCCCCceEEEEecCCccHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHH---HHHHHHHHHHH
Q 018428 130 WPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAG---VLLLILSLLFV 206 (356)
Q Consensus 130 ~P~~L~i~~~Q~F~d~d~yYvW~Ye~~~~~~~~l~~~lliv~ilai~LFPLWP~~~R~gVwYLSvg---lLgl~f~laIv 206 (356)
++.+|+++++|.|.|+|+||+|+|||+ ++++++++++++++++|+|||||||++||+|||||||| |||+||+|||+
T Consensus 81 k~~~L~~~~~q~f~d~~~~YvW~ye~~-~~~~~l~~~~~~~~v~a~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~laiv 159 (224)
T PF03839_consen 81 KKFRLEIHPDQTFVDPDEYYVWIYEPS-PLMQYLIGALLLVGVIAICLFPLWPRWMRQGVYYLSVGALGLLGLFFALAIV 159 (224)
T ss_pred CCccceECcccccCCCCeEEEEEecCC-cHHHHHHHHHHHHHHHHHHhhhcChHHHhheeehhHHHHHHHHHHHHHHHHH
Confidence 778899999999998899999999996 78999999999999999999999999999999999976 67788999999
Q ss_pred HHHHHHHHHHHh-C-CceeeccccccccccchhccccCCCCc
Q 018428 207 RAAIFGMIWILL-G-KRVWFFPNILAEEATLRELFRFWPKKD 246 (356)
Q Consensus 207 RlILF~itw~~~-g-~~fWLFPNLFeD~~~~~sffp~w~~~d 246 (356)
|+|||+|+|+++ | ++||||||||||||+++||.|+|.+.+
T Consensus 160 Rlilf~i~w~~~~g~~~fWlfPNLfeD~Gf~eSF~Ply~~~~ 201 (224)
T PF03839_consen 160 RLILFLITWFFTGGKHGFWLFPNLFEDVGFFESFKPLYSWEY 201 (224)
T ss_pred HHHHHHHHHHHhcCCCCEEeCCccccccchhhheeecccccc
Confidence 999999999988 5 689999999999999999999999843
No 3
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-55 Score=424.62 Aligned_cols=294 Identities=35% Similarity=0.518 Sum_probs=230.6
Q ss_pred hHHHHHhhhcccccCCCCCCCCCCCCCCCCCCchHHHHHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhcCcccc
Q 018428 7 AEKKRVRRSSAVVQNGTRDPNSDTPPRKQAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVK 86 (356)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~ 86 (356)
+.+.+..+.++...+..+|.-+++..++++..++.++.-++..+.++.|-+++ .++-.++.++|+++..-..-+++...
T Consensus 36 ~~~~~~~~v~~~~~s~~vd~l~dsK~~k~~~~~~lF~tr~~~~~~~~rl~~k~-~~~ra~k~~~r~~e~~~~~~~d~~~~ 114 (372)
T KOG2927|consen 36 KTKFAGHRVSYFSSSKAVDVLLDSKPRKQAKKKALFQTREEKVHYHKRLNSKQ-VFERAKKVVARQKEIESKKPNDKDKA 114 (372)
T ss_pred cchhhhccccccccchHHHHhhcchhhhhhcccccccchhhhhhHHHHHHHHH-HHHHHhhhccccccccccCcCCcchh
Confidence 44455555554444444555555666666666666666666666665565555 44555666666666655555555444
Q ss_pred ccccCCC--hHHHHHHHHHHHhcCceeeeeccccccCCCCCCCCCCCcceeecCCcccCCCCceEEEEecCCccHHHHHH
Q 018428 87 DILESDR--NLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLL 164 (356)
Q Consensus 87 ~~L~~dr--~~~a~~~~~~LL~~~~~~Rv~K~~~~~~pgK~K~~K~P~~L~i~~~Q~F~d~d~yYvW~Ye~~~~~~~~l~ 164 (356)
+.+.+.+ +..+.+....|+..|.-.+++|+.+..++|+++.++++.+|+|+++|.|.|+|+||||+|||. |.+.+++
T Consensus 115 d~~ke~~k~~~~~~de~~~l~~e~~~~~~d~v~k~~~k~ek~kkkk~~~l~i~~dQ~F~d~de~YVW~yep~-~~~~~vl 193 (372)
T KOG2927|consen 115 DILKERDKRELKAKDEVKALLKEGLKKLCDRVAKTEEKGEKKKKKKKFELEIHDDQAFQDGDEHYVWIYEPR-PLMWQVL 193 (372)
T ss_pred hhhcchhhhhhhHHHHHHHhhccchhhhccchhcccccchhhcccCccceeeccchhhcccCceEEEeccCC-chhHHHH
Confidence 4443321 235677888899999999999998887788767778899999999999998899999999996 6778999
Q ss_pred HHHHHHHHHHHhhcccCcccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhC--Cceeeccccccccccchhcc
Q 018428 165 SFFWPVLTLAICLFPVYPHRCKLLILYSCAG---VLLLILSLLFVRAAIFGMIWILLG--KRVWFFPNILAEEATLRELF 239 (356)
Q Consensus 165 ~~lliv~ilai~LFPLWP~~~R~gVwYLSvg---lLgl~f~laIvRlILF~itw~~~g--~~fWLFPNLFeD~~~~~sff 239 (356)
++++++++||+|||||||++||+||||+|+| ||++||++||+|+|||+|+|+++| .+|||||||||||||++||+
T Consensus 194 ~~~fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~g~~g~W~FPNL~eDvGfleSF~ 273 (372)
T KOG2927|consen 194 GVLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTGGKHGFWLFPNLTEDVGFLESFK 273 (372)
T ss_pred HHHHHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEeccchhhhhhHHHhhc
Confidence 9999999999999999999999999999983 778899999999999999999999 69999999999999999999
Q ss_pred ccCCCCccccchhHHHHHHHHHHHHHHHHhhhccCccHHHHHHHHhhhhhhhhHHHhcccccccCcccccCCCcc
Q 018428 240 RFWPKKDEEEKPKWAARLFYAVVAVLVILLLRHHAPDEAARARYQKRMSNIIDDVLEWSPRLALSGMMEKQPDVA 314 (356)
Q Consensus 240 p~w~~~d~~~~~~~~~Rl~~~~~~~~~~~~l~~h~p~~~~~~~~q~~~~~~~dDvldW~~~~~ls~~~~~~~~~~ 314 (356)
|+|+..+.+. +.|++++....... ...+|+|++.++.+++-.+++.||+ ..+.+++ ++|+|++
T Consensus 274 PLy~~~~~~~-~~~~aK~~k~skk~----~k~k~~~~eas~~~~~~~~~~~i~~----t~~e~~e---e~d~d~~ 336 (372)
T KOG2927|consen 274 PLYEYHYKKD-PKKTAKLDKKSKKK----KKRKSSPEEASRSEAEQDMSGHIDP----TEKEALE---ENDTDVE 336 (372)
T ss_pred ccccccCCCC-cchhhHHHHHHHHH----HhhhcChhhhhhhhhhhhhccCCCC----cchhhcc---ccCCchh
Confidence 9999865543 44898988765443 4678999999999999999999999 5677777 7878874
No 4
>COG5232 SEC62 Preprotein translocase subunit Sec62 [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-50 Score=372.89 Aligned_cols=198 Identities=20% Similarity=0.452 Sum_probs=172.2
Q ss_pred hHHHHHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhc---------CccccccccCCC---hHHHHHHHHHHHhc
Q 018428 40 DVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRN---------HPEVKDILESDR---NLETEDIANALLSK 107 (356)
Q Consensus 40 d~~~avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~---------~p~~~~~L~~dr---~~~a~~~~~~LL~~ 107 (356)
-++.+++++||+++++|+|+|++|+++|||||.||++|+|.+ .|+..+.+.... .+.+.++...||.+
T Consensus 26 ~~~~r~~s~lrsrpelkq~~g~~q~k~v~~fr~kr~lR~l~sEeyt~~~~r~pkvy~gvp~~~i~~~e~~~e~~~~lim~ 105 (259)
T COG5232 26 AVYLRPKSSLRSRPELKQMHGARQKKTVELFRCKRILRWLNSEEYTLRHRRRPKVYRGVPAVAILTKEGLDELQARLIMQ 105 (259)
T ss_pred eeeechHhhhhcCHHHHhhhhhhhcceehhHHHHHHHHHHhHHHHhhhhccCCcccCCCChHHhhhhhhhHHHHHHHHHH
Confidence 457789999999999999999999999999999999999963 355555443211 13677899999999
Q ss_pred CceeeeeccccccCCCCCCCCCCCcceeecCCcccCCCCceEEEEecCCccHHHHHHHHHHHHHHHHHhhcccCcccchh
Q 018428 108 NLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKL 187 (356)
Q Consensus 108 ~~~~Rv~K~~~~~~pgK~K~~K~P~~L~i~~~Q~F~d~d~yYvW~Ye~~~~~~~~l~~~lliv~ilai~LFPLWP~~~R~ 187 (356)
.++.+++|++.+. .|. +.| +|+++.+|.|. +|+||||.|||. +...+++.++.+++++|+|||||||+.||.
T Consensus 106 ~ml~~v~kl~~~~--~K~---~~~-el~V~~~q~fq-~D~hyVw~yep~-~~~~~~l~~~fvlv~lalVlfplWPr~mr~ 177 (259)
T COG5232 106 EMLNEVIKLKVHI--NKR---NTK-ELDVVLDQKFQ-EDQHYVWAYEPT-SNISLVLCGVFVLVTLALVLFPLWPRNMRQ 177 (259)
T ss_pred HHhHHHHhcChhh--hhc---cCc-eeEeechhhhc-ccceeeeecCCC-ccchhhHHHHHHHHHHHHHHHhcCchHhhc
Confidence 9999999987532 222 233 89999999997 589999999996 677899999999999999999999999999
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCCceeeccccccccccchhccccCCCC
Q 018428 188 LILYSCA---GVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEEATLRELFRFWPKK 245 (356)
Q Consensus 188 gVwYLSv---glLgl~f~laIvRlILF~itw~~~g~~fWLFPNLFeD~~~~~sffp~w~~~ 245 (356)
|.||+|+ |+|++||++||+|+|||+||+++..+|||||||||||||+++||.|+|.+-
T Consensus 178 g~~Y~s~g~~G~i~~ffvlaIlRliLf~it~~~y~~GiWlFPNLfeDvGf~eSFkPLw~~h 238 (259)
T COG5232 178 GLFYMSYGLGGFITFFFVLAILRLILFSITYLLYPSGIWLFPNLFEDVGFFESFKPLWEYH 238 (259)
T ss_pred CeeeeeeccchHHHHHHHHHHHHHHHHHhhheeecCceeecchHHhhcchhhhcchHHhhc
Confidence 9999996 567789999999999999999999999999999999999999999999973
No 5
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=96.25 E-value=0.022 Score=43.83 Aligned_cols=47 Identities=23% Similarity=0.346 Sum_probs=36.5
Q ss_pred ceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 65 TRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 65 krVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
.-.+-|.|+++|++|+++-. ....+| .+|+.+++.|+..|+|.++..
T Consensus 13 ~~~~~F~G~e~v~WL~~~~~---~~~~~r-~eA~~l~q~Ll~~g~i~~v~~ 59 (74)
T PF00610_consen 13 TYPNCFTGSEAVDWLMDNFE---GFVRDR-EEAVQLGQELLDHGFIEHVSD 59 (74)
T ss_dssp EECCEEEHHHHHHHHHHTSC---TSTSSH-HHHHHHHHHHHHCTSEEESSS
T ss_pred EcCCEeEhHHHHHHHHHhcc---ccccCH-HHHHHHHHHHHHCCCEEECCC
Confidence 35678999999999996432 112445 489999999999999999665
No 6
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=95.84 E-value=0.026 Score=45.88 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=46.3
Q ss_pred HHhcCCCCccceeeecCceE-eEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeecc
Q 018428 48 KVRDHKDLESRWAVLQETRV-EYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRV 116 (356)
Q Consensus 48 ~LR~~k~lK~R~gil~gkrV-dyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~ 116 (356)
+.-...|++.++-...++.+ .-|.|+++|+||+++-++ .++ .+|.++++.|++.|+|.++...
T Consensus 6 ~~~~~~Gv~~~~~r~~~~~~~~~F~G~~~v~WL~~~~~~-----~~~-~EA~~~~~~ll~~gli~~V~~~ 69 (88)
T cd04450 6 MQDSEVGVRMRTEKSFLTTVPYAFTGKAIVQWLMDCTDV-----VDP-SEALEIAALFVKYGLITPVSDH 69 (88)
T ss_pred hcCCCCCeeeeeeEEeeeEcCceeEhHHHHHHHHHCCCC-----CCH-HHHHHHHHHHHHCCCEEEecCC
Confidence 33345566655444445444 779999999999987654 344 3899999999999999998763
No 7
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=95.75 E-value=0.033 Score=44.90 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=48.4
Q ss_pred HHHHHHHhcCCC--CccceeeecCceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 43 QLFAEKVRDHKD--LESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 43 ~avA~~LR~~k~--lK~R~gil~gkrVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
.++|+-.|+..+ +|.|..- ...--.=|.|.++|+||.++-+. ..+| .+|..+++.|+++|+|..+.+
T Consensus 2 ~~i~~~m~~~~~~~i~~r~~~-~~~~~~cF~G~e~VdWL~~~~~~----~~~r-~eAv~lgq~Ll~~g~I~hv~~ 70 (83)
T cd04449 2 AEIAEAMRDPSGIGIFDRSWH-KGLPSNCFIGSEAVSWLINNFED----VDTR-EEAVELGQELMNEGLIEHVSG 70 (83)
T ss_pred HHHHHHHhCCCCCceeechhc-CccCCcceEhHHHHHHHHHhCCC----CCCH-HHHHHHHHHHHHCCCEEecCC
Confidence 367888887554 6666432 33445669999999999976431 1445 489999999999999998654
No 8
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.009 Score=60.25 Aligned_cols=81 Identities=23% Similarity=0.247 Sum_probs=66.5
Q ss_pred CCCCchHHHHHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhcCcccc----ccccCCChHHHHHHHHHHHhcCce
Q 018428 35 QAAKKDVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVK----DILESDRNLETEDIANALLSKNLL 110 (356)
Q Consensus 35 ~~~~~d~~~avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~----~~L~~dr~~~a~~~~~~LL~~~~~ 110 (356)
+..+.+.-+.+|.++|.+++.+. +-+.|++|+||.++.+++.|+++.+.+ +.+++++. +.......|++++++
T Consensus 14 ~~~~~k~~~~~~k~~r~~~p~~~--~~~~~~~v~~~~~s~~vd~l~dsK~~k~~~~~~lF~tr~-~~~~~~~rl~~k~~~ 90 (372)
T KOG2927|consen 14 VIKPSKEEKVVAKYLRFNKPTGK--TKFAGHRVSYFSSSKAVDVLLDSKPRKQAKKKALFQTRE-EKVHYHKRLNSKQVF 90 (372)
T ss_pred cccccHHHHHHHHHHHhcCCcCc--chhhhccccccccchHHHHhhcchhhhhhcccccccchh-hhhhHHHHHHHHHHH
Confidence 44555667899999999987765 888999999999999999999887654 56677774 667777889999999
Q ss_pred eeeecccc
Q 018428 111 VRCDRVVK 118 (356)
Q Consensus 111 ~Rv~K~~~ 118 (356)
+|+.+...
T Consensus 91 ~ra~k~~~ 98 (372)
T KOG2927|consen 91 ERAKKVVA 98 (372)
T ss_pred HHHhhhcc
Confidence 99988764
No 9
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=95.51 E-value=0.028 Score=46.17 Aligned_cols=57 Identities=19% Similarity=0.291 Sum_probs=41.9
Q ss_pred CCCCccceeeecCceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 52 HKDLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 52 ~k~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
...+|.|..-+ ..--.=|.|.++|+||.++.+. .+|+ +|..+++.|+++|+|..|..
T Consensus 16 ~~~ik~R~~~~-~~y~~cF~GsElVdWL~~~~~~-----~sR~-eAv~lgq~Ll~~gii~HV~~ 72 (85)
T cd04441 16 NSILQVREEEG-VKYERTFVGSEFIDWLLQEGEA-----ESRR-EAVQLCRRLLEHGIIQHVSN 72 (85)
T ss_pred CCceeeeEeCC-EEcCCEeEchHHHHHHHHcCCC-----CCHH-HHHHHHHHHHHCCCEEecCC
Confidence 34566665422 2234569999999999987643 4564 89999999999999998654
No 10
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=95.51 E-value=0.024 Score=46.19 Aligned_cols=60 Identities=27% Similarity=0.293 Sum_probs=41.6
Q ss_pred cCCCCccceeeecC-ceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 51 DHKDLESRWAVLQE-TRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 51 ~~k~lK~R~gil~g-krVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
..+|++.|.-.... .--.=|-|.++|+||.++-+. ..+| .+|..+++.|+++|+|..+..
T Consensus 10 ~~~Gl~ikdR~~~~~~~p~~F~GsdlVdWL~~~~~~----~~~R-~eAv~~g~~Ll~~G~i~HV~~ 70 (84)
T cd04438 10 PDSGLEIKDRMWLKITIPNSFIGSDLVDWLLSHVEG----LTDR-REARKYASSLLKLGYIRHTVN 70 (84)
T ss_pred CCCCCceEEEEEeeEECCccccchHHHHHHHHhCCC----CCCH-HHHHHHHHHHHHCCcEEecCC
Confidence 34566555333322 223568999999999976542 1445 389999999999999999654
No 11
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=95.28 E-value=0.035 Score=44.94 Aligned_cols=43 Identities=28% Similarity=0.448 Sum_probs=35.2
Q ss_pred EeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 67 VEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 67 VdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
-.-|.|.++|++|.++... .+| .+|..+++.|+..|+|..+..
T Consensus 26 ~~cF~GselVdWL~~~~~~-----~~r-~eAv~lg~~Ll~~G~i~HV~~ 68 (81)
T cd04439 26 PKCFLGNEFVSWLLEIGEI-----SKP-EEGVNLGQALLENGIIHHVSD 68 (81)
T ss_pred CceeEhHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCEEecCC
Confidence 3559999999999977643 444 489999999999999999654
No 12
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=95.24 E-value=0.032 Score=45.45 Aligned_cols=43 Identities=28% Similarity=0.247 Sum_probs=34.7
Q ss_pred EeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 67 VEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 67 VdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
-.-|.|.++|++|.++... .+| .+|..+++.|+.+|+|..+..
T Consensus 28 ~~cF~GselVdWL~~~~~~-----~sR-~eAv~lg~~Ll~~G~i~HV~~ 70 (83)
T cd04443 28 KGVFCGCDLVSWLIEVGLA-----QDR-GEAVLYGRRLLQGGVLQHITN 70 (83)
T ss_pred cccccHHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCEEecCC
Confidence 3559999999999976432 455 489999999999999999654
No 13
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=95.21 E-value=0.053 Score=42.05 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=35.6
Q ss_pred eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 66 RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 66 rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
--+-|.|+++|++|+++-.. .++ .+|..+++.|++.|+|..+..
T Consensus 17 ~~~~F~G~e~v~wL~~~~~~-----~~r-~eA~~l~~~ll~~g~i~~v~~ 60 (77)
T smart00049 17 YPNCFTGSELVDWLMDNLEI-----IDR-EEAVHLGQLLLDEGLIHHVNG 60 (77)
T ss_pred CcceeEcHHHHHHHHHcCCc-----CCH-HHHHHHHHHHHHCCCEEEeCC
Confidence 34569999999999976643 344 489999999999999999754
No 14
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=95.15 E-value=0.032 Score=45.07 Aligned_cols=43 Identities=21% Similarity=0.355 Sum_probs=34.8
Q ss_pred EeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 67 VEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 67 VdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
-.=|.|.++|+||.++... .+| .+|..+++.|+.+|+|..|..
T Consensus 26 ~~cF~GselVdWL~~~~~~-----~~R-~eAv~~gq~Ll~~g~i~hV~~ 68 (81)
T cd04448 26 TNCILGKELVNWLIRQGKA-----ATR-VQAIAIGQALLDAGWIECVSD 68 (81)
T ss_pred CcccChHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCEEecCC
Confidence 3458999999999976432 455 389999999999999999754
No 15
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=95.08 E-value=0.086 Score=40.90 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=35.3
Q ss_pred eEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 68 EYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 68 dyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
+-|.|+++|+||.++-.. .++ .+|+++++.|+..|+|..+..
T Consensus 27 ~~F~G~e~v~WL~~~~~~-----~~r-~ea~~~~~~ll~~g~i~~v~~ 68 (81)
T cd04371 27 NCFTGSELVDWLLDNLEA-----ITR-EEAVELGQALLKHGLIHHVSD 68 (81)
T ss_pred ceeEcHHHHHHHHHhCCC-----CCH-HHHHHHHHHHHHCCCEEEeCC
Confidence 679999999999976544 344 389999999999999999775
No 16
>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=94.61 E-value=0.074 Score=44.49 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=34.4
Q ss_pred eEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 68 EYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 68 dyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
.-|-|+++|+||.++-+. .+|+ +|..+++.|+..|+|..|..
T Consensus 36 ~cFvGsElVdWLi~~g~~-----~tR~-eAv~~gq~Ll~~gii~HV~~ 77 (93)
T cd04440 36 SVVPASKLVDWLLAQGDC-----RTRE-EAVILGVGLCNNGFMHHVLE 77 (93)
T ss_pred cccchhHHHHHHHHcCCC-----CCHH-HHHHHHHHHHhCCCEEecCC
Confidence 348899999999987543 4564 89999999999999999653
No 17
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=94.55 E-value=0.069 Score=43.53 Aligned_cols=42 Identities=29% Similarity=0.478 Sum_probs=34.6
Q ss_pred eEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 68 EYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 68 dyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
+=|-|.++|+||.++.+. .+| .+|..+++.|++.|+|..|..
T Consensus 27 ~cF~GselVdWL~~~~~~-----~sR-~eAv~lgq~Ll~~gvi~HV~~ 68 (82)
T cd04442 27 NCFVGKELIDWLIEHKEA-----SDR-ETAIKIMQKLLDHSIIHHVCD 68 (82)
T ss_pred ceeEcHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCEEeccC
Confidence 459999999999976542 445 389999999999999999644
No 18
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=94.46 E-value=0.15 Score=44.66 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=55.4
Q ss_pred HHHHHHhcCC--CCccceeeecCceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccccccC
Q 018428 44 LFAEKVRDHK--DLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLR 121 (356)
Q Consensus 44 avA~~LR~~k--~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~~~~~ 121 (356)
++=+.++.+. .+|.|.--+ ..--+=|.|+++|+||.++-+. ..+|+ +|..+++.|+++|+|..|.+
T Consensus 4 ~l~~~~~~~~~~~ikdR~~~~-~~y~~cF~GsElVdWLl~~~~~----v~sR~-eAv~lgq~Ll~~gvi~HV~~------ 71 (125)
T cd04437 4 ALRNAILSDAPHLIRDRKYHL-RTYRQCCVGTELVDWLLQQSPC----VQSRS-QAVGMWQVLLEEGVLLHVDQ------ 71 (125)
T ss_pred HHHHHHHccCcccceeeeECC-EECCcccccHHHHHHHHHcCCC----CCCHH-HHHHHHHHHHhCCCeEEeCC------
Confidence 4556677654 344443321 1233559999999999987532 14453 89999999999999999753
Q ss_pred CCCCCCCCCCcceeecCCcccCCCCceEEEEecCC
Q 018428 122 PGKKKLSTWPAHLEIFPEQVFSDNDAFFAWTFEKG 156 (356)
Q Consensus 122 pgK~K~~K~P~~L~i~~~Q~F~d~d~yYvW~Ye~~ 156 (356)
++.|.|+..||-+.-+-+
T Consensus 72 -----------------~h~F~D~~~fYrF~~d~~ 89 (125)
T cd04437 72 -----------------ELHFQDKYQFYRFSDDEC 89 (125)
T ss_pred -----------------cCccccCCeeEEECCccC
Confidence 356776555676655543
No 19
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=93.55 E-value=0.19 Score=42.20 Aligned_cols=70 Identities=13% Similarity=0.224 Sum_probs=49.8
Q ss_pred HHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhc----CccccccccCCChHHHHHHHHHHHhcCceeeeecc
Q 018428 44 LFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRN----HPEVKDILESDRNLETEDIANALLSKNLLVRCDRV 116 (356)
Q Consensus 44 avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~----~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~ 116 (356)
++.+.||...++|.|.--|.- --+=|.|+++|++|.+ |....+ ...+| .+|..+++.|+.+|+|..|...
T Consensus 3 ~ii~~~r~~v~ikdRr~~lk~-y~~CF~GsEaVDwL~~~l~~n~~f~~-~~~tR-~~Av~l~q~Ll~~gvi~~V~~~ 76 (95)
T cd04446 3 SIIDALQTQVEVKKRRHNLKS-YHDCFLGSEAVDVVLAHLMQNKYFGD-VDVPR-AKAVRLCQALMDCRVFEAVGTK 76 (95)
T ss_pred HHHHHHHhcCcccceeeecee-cccccchHHHHHHHHHHHhhccccCc-ccCCH-HHHHHHHHHHHHcCCeeeccch
Confidence 467889998888887554432 3467999999998864 222111 12345 4899999999999999997543
No 20
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=91.46 E-value=0.26 Score=42.44 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=51.0
Q ss_pred HHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccc
Q 018428 43 QLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVV 117 (356)
Q Consensus 43 ~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~ 117 (356)
..||.-+++ ..|+|-..=.-+++ --+=|-|+++|+||..+... .+| .++..+|+.|+..|+|..|....
T Consensus 3 ~~L~~~mq~~~~Gik~~~~r~~~k~y~~CF~Gse~VDWLv~~~~~-----i~R-~EAv~l~q~Lmd~gli~hV~~~s 73 (109)
T cd04444 3 HRIVDKMHDSSTGIRHSPNMEQGSTYKKTFLGSALVDWLISNSFA-----ASR-LEAVTLASMLMEENFLRPVGVRS 73 (109)
T ss_pred HHHHHHHhCCCcCcchhhhhhccccccccccchHHHHHHHHCCCC-----CCH-HHHHHHHHHHHhCCchhhHHHHh
Confidence 468888886 66776422222444 44569999999999987653 345 38999999999999999988654
No 21
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=88.28 E-value=0.62 Score=39.54 Aligned_cols=60 Identities=18% Similarity=0.219 Sum_probs=44.5
Q ss_pred CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccc
Q 018428 52 HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVV 117 (356)
Q Consensus 52 ~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~ 117 (356)
+.|+|.|.-.++++ --.-|.|.+.|+||.++-.+ .+| .++..++..|++.|++.++....
T Consensus 13 ~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v-----~~r-~EAl~las~Ll~eGyL~P~gd~s 73 (99)
T cd04445 13 EKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSV-----RNR-QEGLMLASSLLNEGYLQPAGDTS 73 (99)
T ss_pred ccchhhhhHHHhhccccceecccHHHHHHHHhhcc-----cch-HHHHHHHHHHHHcCCeeecCccc
Confidence 45677665555555 33569999999999865433 334 38899999999999999977654
No 22
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=81.33 E-value=3.2 Score=34.30 Aligned_cols=57 Identities=21% Similarity=0.202 Sum_probs=42.1
Q ss_pred CCccceeeecCceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeecc
Q 018428 54 DLESRWAVLQETRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRV 116 (356)
Q Consensus 54 ~lK~R~gil~gkrVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~ 116 (356)
++..|.-=+-|..-+-|.|.+++++|++|... ++. ..||.+++-|+..||+-+|--+
T Consensus 14 p~~~~kvPilGty~nt~sG~~Iv~~L~~n~~~-----~s~-~~aE~fGQdLv~~gfir~~g~v 70 (84)
T cd04436 14 PLADYKVPILGTYQNTSSGSEIVSWLQENMPE-----KDL-DAAEAFGQDLLNQGFLRLVGGV 70 (84)
T ss_pred CCccceecccccccCcccHHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHhCchHHHhccc
Confidence 33333333445777999999999999988765 222 3789999999999999776544
No 23
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=74.07 E-value=4.5 Score=33.98 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=46.3
Q ss_pred HHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhc----CccccccccCCChHHHHHHHHHHHhcCceeee
Q 018428 44 LFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRN----HPEVKDILESDRNLETEDIANALLSKNLLVRC 113 (356)
Q Consensus 44 avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~----~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv 113 (356)
++.+.+|...++|.|.--|. .-=+=|.|++||++|.+ |+...+. .+| .+|..+++.|+.++.|..+
T Consensus 5 ~ii~~~r~g~~vk~rR~~lr-~y~~CF~gsEAVDwL~~~l~~n~~fg~~--vtR-~~av~l~qkll~~hVie~V 74 (92)
T cd04447 5 EVTELFRAGMPLRKHRQHFK-SYENCFTASEAVDWLHELLRSNSNFGPE--VTR-QQTVQLLKKFLKNHVIEDI 74 (92)
T ss_pred HHHHHHHccCChHHHHHhcc-cCccccchHHHHHHHHHHHHhccccCCC--CCH-HHHHHHHHHHHHcCCchhh
Confidence 46778888777776543332 23467999999999985 3444332 344 3888999999999999763
No 24
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=69.34 E-value=15 Score=35.20 Aligned_cols=30 Identities=23% Similarity=0.653 Sum_probs=22.1
Q ss_pred HHHHHHHHH-HHHHHHHhhcccCcccchhhHH
Q 018428 160 WQTLLSFFW-PVLTLAICLFPVYPHRCKLLIL 190 (356)
Q Consensus 160 ~~~l~~~ll-iv~ilai~LFPLWP~~~R~gVw 190 (356)
|+.+.+++. =++++.+.|+|+ |...|...+
T Consensus 2 ~tlvf~iL~~Eial~~iL~Lpi-p~r~~~~~~ 32 (216)
T KOG1962|consen 2 WTLVFTILYAEIALFLILLLPI-PPRRRRKIF 32 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Confidence 677777775 456677888999 988777644
No 25
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=68.21 E-value=3.9 Score=43.78 Aligned_cols=60 Identities=25% Similarity=0.439 Sum_probs=43.9
Q ss_pred eEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccccccCCCCCCCCCCCcceeecCCcccCCCCc
Q 018428 68 EYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKTLRPGKKKLSTWPAHLEIFPEQVFSDNDA 147 (356)
Q Consensus 68 dyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~~~~~pgK~K~~K~P~~L~i~~~Q~F~d~d~ 147 (356)
.-|-|.++|+||..|-+- + .+|. +|+.++..||+.|||-.+. .+++|.+ ..
T Consensus 421 nafiGsDlVdWL~~hVeg---~-~~Rk-eAR~yAs~lLk~g~IrHtV-----------------------nK~TFtE-qC 471 (626)
T KOG3571|consen 421 NAFIGSDLVDWLVDHVEG---L-HERK-EARKYASRLLKAGYIRHTV-----------------------NKLTFTE-QC 471 (626)
T ss_pred hhhcchhHHHHHHHHhhh---h-hhHH-HHHHHHHHHHHhCchhhcc-----------------------cceeeee-ee
Confidence 358899999999977543 2 3343 8999999999999985521 1466764 78
Q ss_pred eEEEEecCC
Q 018428 148 FFAWTFEKG 156 (356)
Q Consensus 148 yYvW~Ye~~ 156 (356)
|||.-=+..
T Consensus 472 YYVfGD~c~ 480 (626)
T KOG3571|consen 472 YYVFGDECS 480 (626)
T ss_pred EEEeccccc
Confidence 999876653
No 26
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=57.54 E-value=14 Score=27.77 Aligned_cols=27 Identities=15% Similarity=0.090 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHhhcccCccc
Q 018428 158 PLWQTLLSFFWPVLTLAICLFPVYPHR 184 (356)
Q Consensus 158 ~~~~~l~~~lliv~ilai~LFPLWP~~ 184 (356)
++|.+++.+.++.++.-.++||.||.+
T Consensus 22 ~ww~~~f~~tivfa~~Y~~~yp~~~~~ 48 (51)
T PF14715_consen 22 RWWLWLFYGTIVFAVGYLVLYPGLGNW 48 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 466677777788899999999999864
No 27
>PF11752 DUF3309: Protein of unknown function (DUF3309); InterPro: IPR021738 This family is conserved in bacteria but its function is not known.
Probab=54.56 E-value=15 Score=27.59 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=16.5
Q ss_pred HHHHHHHHhhcccCcccchhhHHHHH
Q 018428 168 WPVLTLAICLFPVYPHRCKLLILYSC 193 (356)
Q Consensus 168 liv~ilai~LFPLWP~~~R~gVwYLS 193 (356)
+++..+.+--+|.||..-.-| ||-|
T Consensus 6 IiLil~LigalP~wp~sr~wG-y~Ps 30 (49)
T PF11752_consen 6 IILILLLIGALPTWPYSRGWG-YGPS 30 (49)
T ss_pred HHHHHHHHhcCCCCCCCCCCC-cCCc
Confidence 345556667799999875544 5555
No 28
>PRK12438 hypothetical protein; Provisional
Probab=54.26 E-value=5.9 Score=45.32 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=26.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018428 185 CKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLG 219 (356)
Q Consensus 185 ~R~gVwYLSvglLgl~f~laIvRlILF~itw~~~g 219 (356)
.=-..||-++|+..+|....+-|++||+++.++++
T Consensus 40 ~td~lWf~~lgy~~Vf~t~l~tr~~Lf~~~~~~~~ 74 (991)
T PRK12438 40 YTDWLWFGEVGFRSVWITVLLTRLALFAAVALVVG 74 (991)
T ss_pred HHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHH
Confidence 33458999999888888888888888876655443
No 29
>PRK00068 hypothetical protein; Validated
Probab=47.14 E-value=7.4 Score=44.50 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018428 186 KLLILYSCAGVLLLILSLLFVRAAIFGMIWI 216 (356)
Q Consensus 186 R~gVwYLSvglLgl~f~laIvRlILF~itw~ 216 (356)
=-..||-++|+..+|....+-|++||+++.+
T Consensus 39 td~lWF~~lgy~~Vf~t~l~t~~~Lf~~~~~ 69 (970)
T PRK00068 39 IDWLWFGEVGYRSVFFTKLVTRIVLFIPVGL 69 (970)
T ss_pred HHHHHHHhCCCceeehHHHHHHHHHHHHHHH
Confidence 3458999999888888888888888876655
No 30
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=46.80 E-value=35 Score=24.56 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018428 189 ILYSCAGVLLLILSLLFVRAAIFGMIW 215 (356)
Q Consensus 189 VwYLSvglLgl~f~laIvRlILF~itw 215 (356)
=+|+|+ |.+++.+.++-+|+|+++.
T Consensus 8 dfylc~--l~~llflv~imliif~f~l 32 (43)
T PF11395_consen 8 DFYLCF--LSFLLFLVIIMLIIFWFSL 32 (43)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 467664 4444555566778887764
No 31
>PRK05978 hypothetical protein; Provisional
Probab=46.09 E-value=74 Score=28.84 Aligned_cols=50 Identities=18% Similarity=0.083 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHH--hhcccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018428 158 PLWQTLLSFFWPVLTLAI--CLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFG 212 (356)
Q Consensus 158 ~~~~~l~~~lliv~ilai--~LFPLWP~~~R~gVwYLSvglLgl~f~laIvRlILF~ 212 (356)
.+.++++.+.+++.++.. ..|. +|.|.-..+|-. ++++++++++|-+-..
T Consensus 72 Ay~~i~ivg~ivv~~~l~~~~~~~-pp~w~~~~i~~~----l~lil~L~LL~p~KG~ 123 (148)
T PRK05978 72 AYLVIVIVGHIVVGGFMGTETTFN-LPVWLHLAIWLP----ITLIASLALLQPIKGA 123 (148)
T ss_pred cchhHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 355555555443333332 3454 576666655543 3334455555544443
No 32
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=44.09 E-value=58 Score=25.36 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018428 187 LLILYSCAGVLLLILSLLFVRAAIFGMIWI 216 (356)
Q Consensus 187 ~gVwYLSvglLgl~f~laIvRlILF~itw~ 216 (356)
.|+++.-+|+...|++|+++=+++.++.++
T Consensus 3 ~gl~i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 3 EGLQIMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666678888888888888888888875
No 33
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=43.71 E-value=25 Score=34.21 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhcccCccc
Q 018428 158 PLWQTLLSFFWPVLTLAICLFPVYPHR 184 (356)
Q Consensus 158 ~~~~~l~~~lliv~ilai~LFPLWP~~ 184 (356)
.+|.+++-+.+|.++.=.++||.||.+
T Consensus 28 ~ww~~~f~~~i~~~~~y~~~yp~~~~~ 54 (285)
T TIGR00782 28 RWWLWTFYATIVWGFGYLVAYPAWPLV 54 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 355566666678888889999999953
No 34
>KOG3814 consensus Signaling protein van gogh/strabismus [Signal transduction mechanisms]
Probab=42.78 E-value=34 Score=35.93 Aligned_cols=21 Identities=33% Similarity=0.679 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhcc-cCc
Q 018428 162 TLLSFFWPVLTLAICLFP-VYP 182 (356)
Q Consensus 162 ~l~~~lliv~ilai~LFP-LWP 182 (356)
.+++++..+.-+|+|+.| +.|
T Consensus 118 slL~~~sf~sp~am~~lP~~~P 139 (531)
T KOG3814|consen 118 SLLGLLSFLSPPAMCLLPIIAP 139 (531)
T ss_pred HHHHHHHHhchhHHHhcccccc
Confidence 456666667778999999 445
No 35
>COG4459 NapE Periplasmic nitrate reductase system, NapE component [Energy production and conversion]
Probab=41.22 E-value=37 Score=26.52 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=14.3
Q ss_pred HHHHHHhhcccCcccchhhHHHHHHHHHHHH
Q 018428 170 VLTLAICLFPVYPHRCKLLILYSCAGVLLLI 200 (356)
Q Consensus 170 v~ilai~LFPLWP~~~R~gVwYLSvglLgl~ 200 (356)
..++++|+||+ ||+|+.|-+
T Consensus 24 Fl~la~~l~Pi-----------lsV~~VG~y 43 (62)
T COG4459 24 FLFLAFGLFPI-----------LSVAFVGGY 43 (62)
T ss_pred HHHHHHHHHHH-----------HHHHHhcch
Confidence 45577888886 788877653
No 36
>PF03699 UPF0182: Uncharacterised protein family (UPF0182); InterPro: IPR005372 This family contains uncharacterised integral membrane proteins.; GO: 0016021 integral to membrane
Probab=40.85 E-value=37 Score=38.14 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 018428 188 LILYSCAGVLLLILSLLFVRAAIFGMIWILLG 219 (356)
Q Consensus 188 gVwYLSvglLgl~f~laIvRlILF~itw~~~g 219 (356)
..||-++|+...|......|+++|++..+++.
T Consensus 30 ~lWF~~lg~~~Vf~t~l~~~~~lf~~~~~~~~ 61 (774)
T PF03699_consen 30 WLWFSSLGYTSVFWTRLLTRIGLFIVAFLLFF 61 (774)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999998888888888888877765543
No 37
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=38.70 E-value=10 Score=38.22 Aligned_cols=31 Identities=19% Similarity=0.599 Sum_probs=0.0
Q ss_pred EEEEecCCccHHH-HHHHHHHHHHHHHHhhcccC
Q 018428 149 FAWTFEKGRPLWQ-TLLSFFWPVLTLAICLFPVY 181 (356)
Q Consensus 149 YvW~Ye~~~~~~~-~l~~~lliv~ilai~LFPLW 181 (356)
-.|+-.+. .++- .++.++.++.++++-+| +|
T Consensus 96 ~L~tLtGQ-~LF~Gi~~l~l~~lLaL~vW~Y-m~ 127 (381)
T PF05297_consen 96 MLWTLTGQ-TLFVGIVILFLCCLLALGVWFY-MW 127 (381)
T ss_dssp ----------------------------------
T ss_pred HHHHhhcc-HHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 35777773 2322 22333345556666677 77
No 38
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=37.83 E-value=69 Score=35.92 Aligned_cols=13 Identities=23% Similarity=0.728 Sum_probs=8.3
Q ss_pred hCCcee-ecccccc
Q 018428 218 LGKRVW-FFPNILA 230 (356)
Q Consensus 218 ~g~~fW-LFPNLFe 230 (356)
.|-+|| |.|.|.-
T Consensus 51 ~G~d~W~l~pRl~~ 64 (764)
T TIGR03074 51 VGLDFWPLIPRLGL 64 (764)
T ss_pred cCCchhhhcchhhH
Confidence 466777 6676653
No 39
>PF07314 DUF1461: Protein of unknown function (DUF1461); InterPro: IPR010178 This entry represents a family of highly hydrophobic, uncharacterised predicted integral membrane proteins found almost entirely in low-GC Gram-positive bacteria, although a member is also found in Aquifex aeolicus.
Probab=37.15 E-value=1.6e+02 Score=26.88 Aligned_cols=12 Identities=33% Similarity=1.129 Sum_probs=9.3
Q ss_pred HhCCceeec-ccc
Q 018428 217 LLGKRVWFF-PNI 228 (356)
Q Consensus 217 ~~g~~fWLF-PNL 228 (356)
+++.+.|+| |+-
T Consensus 157 fF~Nd~WlFdP~t 169 (181)
T PF07314_consen 157 FFNNDLWLFDPNT 169 (181)
T ss_pred HcCCCCeEECCCC
Confidence 357899999 764
No 40
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=37.07 E-value=91 Score=27.85 Aligned_cols=67 Identities=15% Similarity=0.304 Sum_probs=39.2
Q ss_pred HHHHHHHH-HHHHHHhhcccCcccchhh--HHHHH---HHHHHHHHH----------------------HHHHHHHHHHH
Q 018428 162 TLLSFFWP-VLTLAICLFPVYPHRCKLL--ILYSC---AGVLLLILS----------------------LLFVRAAIFGM 213 (356)
Q Consensus 162 ~l~~~lli-v~ilai~LFPLWP~~~R~g--VwYLS---vglLgl~f~----------------------laIvRlILF~i 213 (356)
.+++++++ +..-|+..||++|..-|.. ..... ++++..+++ +-++=+++|++
T Consensus 12 ~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlGl~t~~L~~l 91 (143)
T cd08763 12 LCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCGILTFVLYFL 91 (143)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHHHHHHHHHHH
Confidence 35555544 5556888899998654443 22222 222222222 22445788888
Q ss_pred HHHHhCCceeeccccc
Q 018428 214 IWILLGKRVWFFPNIL 229 (356)
Q Consensus 214 tw~~~g~~fWLFPNLF 229 (356)
-| ++|--.++||+..
T Consensus 92 Q~-~~G~~~f~~P~~~ 106 (143)
T cd08763 92 QW-LIGFSFFLFPGAS 106 (143)
T ss_pred HH-HHHHHHHHcCCCc
Confidence 88 4677777899865
No 41
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=35.94 E-value=81 Score=30.81 Aligned_cols=55 Identities=11% Similarity=0.057 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHH--HHhhcccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018428 159 LWQTLLSFFWPVLTL--AICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMI 214 (356)
Q Consensus 159 ~~~~l~~~lliv~il--ai~LFPLWP~~~R~gVwYLSvglLgl~f~laIvRlILF~it 214 (356)
++.-.||.+++..++ +---|| |+..+-..++++.+.+..+++++-++|++.|-=.
T Consensus 5 wF~~vMgtg~~s~~~~~~~~~~~-~l~~i~~~l~~l~~~lf~~l~~~~~~r~~~~~~~ 61 (320)
T TIGR00816 5 WFAIVLGTGGLALASLSYSFYLP-ILKDLSDVLFILAIALFFLFTSCWLARLIRYPSN 61 (320)
T ss_pred HHHHHHHHHHHHHHHHHhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444556655544444 222255 5667777888888888877888888887776443
No 42
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=35.85 E-value=80 Score=30.50 Aligned_cols=44 Identities=14% Similarity=0.042 Sum_probs=33.0
Q ss_pred HHHHHHHhhc-----ccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018428 169 PVLTLAICLF-----PVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFG 212 (356)
Q Consensus 169 iv~ilai~LF-----PLWP~~~R~gVwYLSvglLgl~f~laIvRlILF~ 212 (356)
=.++++++++ --|+..+...++++++.+..++.++.++|++.|-
T Consensus 13 Gtg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~ 61 (330)
T PF03595_consen 13 GTGGLSNLLYLLPYHFGGLAILSEVLFILALILFLVLLVLYLLRWIRYP 61 (330)
T ss_dssp HHHHHHHHHHTTTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444555555 6788888889999998888888888888888773
No 43
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=35.69 E-value=64 Score=34.65 Aligned_cols=55 Identities=16% Similarity=0.251 Sum_probs=33.7
Q ss_pred EEEEecCCccHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHH-HHHHHHHHH
Q 018428 149 FAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGV-LLLILSLLF 205 (356)
Q Consensus 149 YvW~Ye~~~~~~~~l~~~lliv~ilai~LFPLWP~~~R~gVwYLSvgl-Lgl~f~laI 205 (356)
.+..|..- |.| +.++.+++.+++++++...|+......+|.+.+++ |++++++..
T Consensus 347 ~~~~~~~v-P~w-w~~~~~~~~~v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~ 402 (624)
T PF03169_consen 347 LMRTYKEV-PMW-WYLAGLVVSFVLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPS 402 (624)
T ss_pred hhhhcCCc-chH-HHHHHHHHHHHHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHH
Confidence 44566654 443 45555667888889999999966666666655443 334444333
No 44
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=34.13 E-value=40 Score=27.67 Aligned_cols=21 Identities=38% Similarity=0.596 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018428 190 LYSCAGVLLLILSLLFVRAAI 210 (356)
Q Consensus 190 wYLSvglLgl~f~laIvRlIL 210 (356)
-+..+++|.+|+++.|||+.=
T Consensus 30 ~faFV~~L~~fL~~liVRCfr 50 (81)
T PF11057_consen 30 AFAFVGLLCLFLGLLIVRCFR 50 (81)
T ss_pred eehHHHHHHHHHHHHHHHHHH
Confidence 344577888899999999853
No 45
>PF07254 DUF1434: Protein of unknown function (DUF1434); InterPro: IPR009883 This family consists of several hypothetical bacterial proteins of around 135 residues in length. Members of this family all appear to be Enterobacterial proteins. The function of this family is unknown.
Probab=33.83 E-value=1.8e+02 Score=25.79 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=20.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhcccCccc
Q 018428 158 PLWQTLLSFFWPVLTLAICLFPVYPHR 184 (356)
Q Consensus 158 ~~~~~l~~~lliv~ilai~LFPLWP~~ 184 (356)
++.+-+++.++..++.++++|.-||..
T Consensus 11 S~~~q~~Sl~~~g~v~~~~Ll~PWP~~ 37 (132)
T PF07254_consen 11 SWRTQLLSLLVHGAVVLLILLAPWPES 37 (132)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 455667777776777777899999954
No 46
>PRK15087 hemolysin; Provisional
Probab=33.30 E-value=1.3e+02 Score=28.41 Aligned_cols=44 Identities=32% Similarity=0.529 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcccchh--hHHHHHHHHHHHHHH
Q 018428 159 LWQTLLSFFWPVLTLAICLFPVYPHRCKL--LILYSCAGVLLLILS 202 (356)
Q Consensus 159 ~~~~l~~~lliv~ilai~LFPLWP~~~R~--gVwYLSvglLgl~f~ 202 (356)
+...++.++.+++++.+++--.|+..-|. .+.|++||.++++..
T Consensus 111 ~~~~l~~~iW~~a~~Gi~~~~~~~~~~r~l~~~~Yl~mGw~~v~~~ 156 (219)
T PRK15087 111 LARGLMIVIWSLALLGILFKLAFAHRFKVLSLVTYLAMGWLSLIVI 156 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 33455555543444333333333444443 488999998887644
No 47
>PF14110 DUF4282: Domain of unknown function (DUF4282)
Probab=32.79 E-value=1.1e+02 Score=24.82 Aligned_cols=22 Identities=23% Similarity=0.316 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 018428 189 ILYSCAGVLLLILSLLFVRAAI 210 (356)
Q Consensus 189 VwYLSvglLgl~f~laIvRlIL 210 (356)
...+.+|.+++++.++..|..+
T Consensus 49 ~~~~l~~~~~~l~~~i~~Ri~~ 70 (90)
T PF14110_consen 49 FLGLLLGPLGFLLGIILWRIML 70 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666666666654
No 48
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=32.67 E-value=42 Score=33.09 Aligned_cols=39 Identities=13% Similarity=0.045 Sum_probs=24.5
Q ss_pred HHHhhcccCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 018428 173 LAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIF 211 (356)
Q Consensus 173 lai~LFPLWP~~~R~gVwYLSvglLgl~f~laIvRlILF 211 (356)
-+++++=-|-..-..+-.|.+..++.++.++.++|.+-|
T Consensus 212 aigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~yy 250 (256)
T PF09788_consen 212 AIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIYY 250 (256)
T ss_pred HHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhhee
Confidence 334446666665666666777666666666677776654
No 49
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=32.48 E-value=1.1e+02 Score=28.55 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHh
Q 018428 162 TLLSFFWPVLTLAIC 176 (356)
Q Consensus 162 ~l~~~lliv~ilai~ 176 (356)
+++-+++++.++.++
T Consensus 80 ~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 80 FFMPVALVLLVLSFV 94 (170)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444433333333
No 50
>PHA02828 putative transmembrane protein; Provisional
Probab=31.97 E-value=85 Score=26.63 Aligned_cols=41 Identities=5% Similarity=0.102 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeecccc
Q 018428 187 LLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKR-VWFFPNI 228 (356)
Q Consensus 187 ~gVwYLSvglLgl~f~laIvRlILF~itw~~~g~~-fWLFPNL 228 (356)
+++.|..+|=++-++..++.|+|+|++-. +.++. +=+.++|
T Consensus 10 l~ifYfi~~~vs~l~~~i~~k~i~Fml~~-vNPYs~~~~iS~l 51 (100)
T PHA02828 10 YNLFYYITSSVSKLFIFIVSKLILFMLQM-VNPYSSYSIISYL 51 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcccchhhcccC
Confidence 46778888878878889999999999986 35553 3344544
No 51
>PRK11513 cytochrome b561; Provisional
Probab=31.90 E-value=1.2e+02 Score=27.64 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=27.9
Q ss_pred ecCCccHHHHHHHHHHHHHHHHHh---hcccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018428 153 FEKGRPLWQTLLSFFWPVLTLAIC---LFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFG 212 (356)
Q Consensus 153 Ye~~~~~~~~l~~~lliv~ilai~---LFPLWP~~~R~gVwYLSvglLgl~f~laIvRlILF~ 212 (356)
|...+...-|++++++++..+.+. .+|- |.......|..|+|++. ++++++|++.=+
T Consensus 5 Y~~~~~~lHWl~a~li~~~~~~~~~~~~~~~-~~~~~~~~~H~s~G~~v--l~L~v~Rl~~r~ 64 (176)
T PRK11513 5 YSRLQIGIHWLVFLLVIVAYCAMEFRGFFPR-SDRPLINMIHVSCGISI--LVLMVVRLLLRL 64 (176)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHcccch-hhHHHHHHHHHHHHHHH--HHHHHHHHHHHh
Confidence 444433445666665555544432 2343 22222234556677654 455677766443
No 52
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=31.77 E-value=44 Score=36.03 Aligned_cols=30 Identities=23% Similarity=0.530 Sum_probs=23.7
Q ss_pred HHHHHHHHhhcccCcccchhhHHHHHHHHHHH
Q 018428 168 WPVLTLAICLFPVYPHRCKLLILYSCAGVLLL 199 (356)
Q Consensus 168 liv~ilai~LFPLWP~~~R~gVwYLSvglLgl 199 (356)
..++.+++|.||||-. |-+++|+|.|+.+=
T Consensus 599 ~~~~a~~i~~~PL~E~--rd~I~~v~~~m~~~ 628 (667)
T KOG2348|consen 599 TFIAAFAITIYPLWES--RDTIYYVCKGMIGK 628 (667)
T ss_pred HHHHHHheEeeeeeec--cccHHHHHHHHhhh
Confidence 4778899999999964 67889999887654
No 53
>PHA02726 hypothetical protein; Provisional
Probab=31.75 E-value=87 Score=26.39 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018428 187 LLILYSCAGVLLLILSLLFVRAAIFGMIWILLGK 220 (356)
Q Consensus 187 ~gVwYLSvglLgl~f~laIvRlILF~itw~~~g~ 220 (356)
+.+.|..+|=+.-++..+++|+|+|++-. +.++
T Consensus 10 lsifYfiig~vs~l~~yl~~k~i~Fm~~l-vnPY 42 (94)
T PHA02726 10 LNIFYFMIRKISGIISLLLMRTIIFLFKL-VNPY 42 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCch
Confidence 45778888888888899999999999875 3443
No 54
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=31.52 E-value=49 Score=37.26 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=36.1
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Q 018428 179 PVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWF 224 (356)
Q Consensus 179 PLWP~~~R~gVwYLSvglLgl~f~laIvRlILF~itw~~~g~~fWL 224 (356)
|.=+-.---..|+-.+|+-+.++.+.+-|+.+|++..++++.+.|+
T Consensus 21 p~~vd~y~~~LWF~evgy~sVf~t~L~t~l~~~~~~~iiv~~~l~~ 66 (885)
T COG1615 21 PRLVDAYVDWLWFGEVGYRSVFSTVLATRLVLFVVIFIIVGGGLAL 66 (885)
T ss_pred ccccceeechhhhcccCchhhHHHHHHHHHHHHHHHHHHhhcchhe
Confidence 5555444455788889999999999999999999988887776554
No 55
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=31.30 E-value=21 Score=32.44 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=45.1
Q ss_pred CceEEEEecCCccHHHHHHHHHHHHHHHHHhhcccCcccchhhHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 018428 146 DAFFAWTFEKGRPLWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYS--CAGVLLLILSLLFVRAAIFGM 213 (356)
Q Consensus 146 d~yYvW~Ye~~~~~~~~l~~~lliv~ilai~LFPLWP~~~R~gVwYL--SvglLgl~f~laIvRlILF~i 213 (356)
-++..+.+...++.|.+++.++++-++++..|...==...|-+--|+ |-+++..++++.++|+++=..
T Consensus 43 tG~lmf~~P~~~~~~~~~l~A~~~G~lFs~~Li~ts~fEvrd~~Iy~krSkaF~~ili~LlviR~~l~~~ 112 (148)
T PF07301_consen 43 TGFLMFVFPFFRPPWLEVLEAFLVGALFSYPLIKTSKFEVRDGQIYLKRSKAFIFILIGLLVIRIVLKSY 112 (148)
T ss_pred HHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhceEEEECCeEEEeccccHHHHHHHHHHHHHHHHHH
Confidence 35666666554444555555555555566666555555666666666 678999999999999987654
No 56
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=31.24 E-value=1.1e+02 Score=26.56 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCceeec
Q 018428 159 LWQTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGV----LLLILSLLFVRAAIFGMIWILLGKRVWFF 225 (356)
Q Consensus 159 ~~~~l~~~lliv~ilai~LFPLWP~~~R~gVwYLSvgl----Lgl~f~laIvRlILF~itw~~~g~~fWLF 225 (356)
....+.|++..++.=+||.-|+ .+++.|+ ++.+-.+.=.|-.+-.++..+.|..||..
T Consensus 8 ~~~l~~g~laAv~aS~CCi~Pl---------lll~lGvsgaw~~~ls~lepyRp~fi~~tl~~lg~a~~~~ 69 (116)
T PF02411_consen 8 NGSLLGGVLAAVLASLCCIGPL---------LLLSLGVSGAWISNLSWLEPYRPYFIALTLLFLGYAFWRL 69 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH---------HHHHHhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555666667777774 4555554 44455677789888788888888887764
No 57
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism]
Probab=30.48 E-value=1.3e+02 Score=32.85 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHH--HhhcccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecccccccc
Q 018428 160 WQTLLSFFWPVLTLA--ICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGKRVWFFPNILAEE 232 (356)
Q Consensus 160 ~~~l~~~lliv~ila--i~LFPLWP~~~R~gVwYLSvglLgl~f~laIvRlILF~itw~~~g~~fWLFPNLFeD~ 232 (356)
|.++++++.+..++. ...++.|=.. ..+|++++++|+.+...+-.=.++|-... .++.++|+-|+++..+
T Consensus 149 w~~i~~~~~~~l~~s~i~~~~lr~~~~--~l~~~~~~~~l~~l~~~~~~~~~~y~~~~-~~~~~i~~~~~~~~~~ 220 (577)
T KOG1362|consen 149 WYTILSLLGIALVLSLIFTKLLRFLAA--ILPWILIILVLVGLLSGIWFCWFLYAILR-NTKVTIGFTSSLFVAV 220 (577)
T ss_pred HHHHHhhhHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cccceeecchHHHHHH
Confidence 344444444333333 3334444332 56777777766655444444334444433 3456788888887543
No 58
>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum [].; GO: 0016021 integral to membrane
Probab=29.04 E-value=5.8e+02 Score=25.28 Aligned_cols=59 Identities=12% Similarity=0.318 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhcccCcccchhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCceeecc
Q 018428 166 FFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILS-----LLFVRAAIFGMIWILLGKRVWFFP 226 (356)
Q Consensus 166 ~lliv~ilai~LFPLWP~~~R~gVwYLSvglLgl~f~-----laIvRlILF~itw~~~g~~fWLFP 226 (356)
+++++..+..+-| - ..+.|..+.++++++.+++.+ ++-.=++++++.+=++-.+||..|
T Consensus 161 ill~~mFi~~~~~-~-~s~~~ii~~~~g~~l~i~v~vGyktk~~A~~Lv~~L~~~n~~~n~fW~~~ 224 (267)
T PF02077_consen 161 ILLVLMFITLLHF-E-WSFLRIILSIVGLALCILVVVGYKTKLSALLLVLWLSIYNVFVNNFWFYP 224 (267)
T ss_pred HHHHHHHHHHHHH-h-ccHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 3444444555555 2 346788777777655443321 333345555555555677899987
No 59
>PLN02250 lipid phosphate phosphatase
Probab=28.74 E-value=6.2e+02 Score=25.53 Aligned_cols=52 Identities=15% Similarity=0.256 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 018428 162 TLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFGMIWILLGK 220 (356)
Q Consensus 162 ~l~~~lliv~ilai~LFPLWP~~~R~gVwYLSvglLgl~f~laIvRlILF~itw~~~g~ 220 (356)
.++++++.+++++++.+ .|..+|-+--+++++++++++.=++..++=+. +|+
T Consensus 72 ~ii~~~iP~~vilv~~~------~r~~~~~l~~~~l~ll~sv~~t~lit~~lK~~-vGR 123 (314)
T PLN02250 72 PLIAILLPFAVILVYYF------IRRDVYDLHHAILGLLFSVLITGVITDAIKDA-VGR 123 (314)
T ss_pred HHHHHHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hCC
Confidence 34555555555444332 24445555556677777777766777776663 555
No 60
>PRK10171 hydrogenase 1 b-type cytochrome subunit; Provisional
Probab=27.57 E-value=4.4e+02 Score=24.87 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=20.0
Q ss_pred CceEEEEecCCccHHHHHHHHHHHHHHHHHhh
Q 018428 146 DAFFAWTFEKGRPLWQTLLSFFWPVLTLAICL 177 (356)
Q Consensus 146 d~yYvW~Ye~~~~~~~~l~~~lliv~ilai~L 177 (356)
|-..+-.|+.+...+-|+.++++++.++.+..
T Consensus 7 ~~~~~~v~~~~~Ri~HW~~Al~i~~l~~tG~~ 38 (235)
T PRK10171 7 NVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYF 38 (235)
T ss_pred CceEEEEeChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666556678887777666555543
No 61
>KOG1821 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.29 E-value=24 Score=37.21 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=9.2
Q ss_pred ccCcccchhhHHHHH
Q 018428 179 PVYPHRCKLLILYSC 193 (356)
Q Consensus 179 PLWP~~~R~gVwYLS 193 (356)
=|||.|+=+-.-|=|
T Consensus 84 lLWP~WLfIRaaadS 98 (662)
T KOG1821|consen 84 LLWPFWLFIRAAADS 98 (662)
T ss_pred HHhHHHHHHHHHHHH
Confidence 379988765444433
No 62
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=27.09 E-value=1.2e+02 Score=29.27 Aligned_cols=39 Identities=28% Similarity=0.219 Sum_probs=24.4
Q ss_pred HHHHHHHHhhcccCcccchh-hHHHHHHHHHHHHHHHHHHHH
Q 018428 168 WPVLTLAICLFPVYPHRCKL-LILYSCAGVLLLILSLLFVRA 208 (356)
Q Consensus 168 liv~ilai~LFPLWP~~~R~-gVwYLSvglLgl~f~laIvRl 208 (356)
.++|++..+++| +..-+. .+.|++||.++++..-.+++.
T Consensus 128 al~Gi~~kl~~~--~~~r~ls~~~yl~mGw~~v~~~~~l~~~ 167 (226)
T COG1272 128 ALAGILFKLFFK--KRFRKLSLVLYLAMGWLGLIVIKPLIAK 167 (226)
T ss_pred HHHHHhhhhhcc--CcCceeeehhhHHHHHHHHHHHHHHHHh
Confidence 355555555555 333333 388999999998766555544
No 63
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=27.00 E-value=1.6e+02 Score=32.93 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHHHHHHHHHHH
Q 018428 161 QTLLSFFWPVLTLAICLFPVYPHRCKLLILYSCAGVLLLILSLLFV 206 (356)
Q Consensus 161 ~~l~~~lliv~ilai~LFPLWP~~~R~gVwYLSvglLgl~f~laIv 206 (356)
-.+.++++++.-|++|-+=.|=..+--.-||+..|+-.++-++.++
T Consensus 3 ~~~~~~~~~~~gl~l~~gg~~l~~lggs~yy~iagl~~l~~~~ll~ 48 (773)
T COG4993 3 VTLTALVIALCGLALLIGGIWLVALGGSWYYLIAGLVLLLSAWLLL 48 (773)
T ss_pred hhHHHHHHHHHHHHHhccceeEEeeCCchHHHHHHHHHHHHHHHHh
Confidence 3456677777778889999998877777788776654444443333
No 64
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=26.70 E-value=59 Score=28.64 Aligned_cols=18 Identities=44% Similarity=0.556 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 018428 198 LLILSLLFVRAAIFGMIW 215 (356)
Q Consensus 198 gl~f~laIvRlILF~itw 215 (356)
.++..+|+|-+++|+|+=
T Consensus 70 ~LivSLaLVsFvIFLiiQ 87 (128)
T PF15145_consen 70 VLIVSLALVSFVIFLIIQ 87 (128)
T ss_pred HHHHHHHHHHHHHHheee
Confidence 356778888888888764
No 65
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=24.69 E-value=1.1e+02 Score=24.95 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=10.2
Q ss_pred ccccccchhcccc
Q 018428 229 LAEEATLRELFRF 241 (356)
Q Consensus 229 FeD~~~~~sffp~ 241 (356)
+||+..+-++|++
T Consensus 31 vd~d~~i~~~F~P 43 (78)
T PF07297_consen 31 VDEDHPIHSFFPP 43 (78)
T ss_pred cCCCchHHHcCCC
Confidence 5788888888874
No 66
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=23.75 E-value=49 Score=28.09 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhcccCc
Q 018428 162 TLLSFFWPVLTLAICLFPVYP 182 (356)
Q Consensus 162 ~l~~~lliv~ilai~LFPLWP 182 (356)
|++.+++++++++++++|+|=
T Consensus 3 Wl~~a~l~~~a~~~v~~pl~r 23 (117)
T TIGR03142 3 WIVAALLTLVALLFLLLPLLR 23 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344455555566666677763
No 67
>PLN02505 omega-6 fatty acid desaturase
Probab=22.87 E-value=2e+02 Score=29.71 Aligned_cols=14 Identities=14% Similarity=0.349 Sum_probs=10.5
Q ss_pred hcccCcccchhhHH
Q 018428 177 LFPVYPHRCKLLIL 190 (356)
Q Consensus 177 LFPLWP~~~R~gVw 190 (356)
..|+||..++..+|
T Consensus 73 ~~~~~p~~~~~~l~ 86 (381)
T PLN02505 73 YIPLLPGPLSYVAW 86 (381)
T ss_pred hccccchHHHHHHH
Confidence 45889988877655
No 68
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=22.48 E-value=2.4e+02 Score=27.45 Aligned_cols=24 Identities=13% Similarity=0.155 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhcccCcccchhh
Q 018428 165 SFFWPVLTLAICLFPVYPHRCKLL 188 (356)
Q Consensus 165 ~~lliv~ilai~LFPLWP~~~R~g 188 (356)
..+.+..++++|.+++=|..-..+
T Consensus 4 ~l~~~~~~l~g~~~~~l~p~~~~~ 27 (247)
T COG1622 4 LLLLVALLLSGCNLTLLDPAGAVA 27 (247)
T ss_pred HHHHHHHHhccCCccccCccchhh
Confidence 344566677888887777766555
No 69
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=22.16 E-value=1.3e+02 Score=23.76 Aligned_cols=19 Identities=11% Similarity=-0.043 Sum_probs=8.2
Q ss_pred CCccHHHHHHHHHHHHHHH
Q 018428 155 KGRPLWQTLLSFFWPVLTL 173 (356)
Q Consensus 155 ~~~~~~~~l~~~lliv~il 173 (356)
|..|....++++++++|++
T Consensus 53 P~~P~~~lil~l~~~~Gl~ 71 (82)
T PF13807_consen 53 PVSPKRALILALGLFLGLI 71 (82)
T ss_pred CCCCcHHHHHHHHHHHHHH
Confidence 3334333444444444444
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.09 E-value=2.5e+02 Score=31.42 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=14.1
Q ss_pred HHhhcc---cCcccchhhHHHHH
Q 018428 174 AICLFP---VYPHRCKLLILYSC 193 (356)
Q Consensus 174 ai~LFP---LWP~~~R~gVwYLS 193 (356)
+++.|- |||.||=+.-.|=|
T Consensus 45 ~~~~~r~e~~~p~wl~~~~~~~~ 67 (697)
T PF09726_consen 45 FMLEFRFEYLWPFWLLLRSVYDS 67 (697)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHH
Confidence 344453 89999988866655
No 71
>KOG3059 consensus N-acetylglucosaminyltransferase complex, subunit PIG-C/GPI2, required for phosphatidylinositol biosynthesis [Lipid transport and metabolism]
Probab=21.88 E-value=1.1e+02 Score=30.80 Aligned_cols=46 Identities=28% Similarity=0.334 Sum_probs=27.3
Q ss_pred HHHHHHHhhcccCcccchhh---HHHHHHHHHHH-----HHHHHHHHHHHHHHH
Q 018428 169 PVLTLAICLFPVYPHRCKLL---ILYSCAGVLLL-----ILSLLFVRAAIFGMI 214 (356)
Q Consensus 169 iv~ilai~LFPLWP~~~R~g---VwYLSvglLgl-----~f~laIvRlILF~it 214 (356)
.+.++|+++|=+||...+.. +-++++++..+ +.+++..++.+|++.
T Consensus 199 ~fllfai~~~al~p~~~~~i~~~~~~~~~~~~~~~~~~ai~~~~~~s~~~~~~F 252 (292)
T KOG3059|consen 199 NFLLFAIQLFALLPNFRKRIKKVIPRSSNLMVLVLASVAIIIIADISLLIFFVF 252 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999965542 55555443322 233366675555443
No 72
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=21.76 E-value=94 Score=33.42 Aligned_cols=22 Identities=18% Similarity=0.620 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhCCceeec
Q 018428 203 LLFVRAAIFGMIWILLGKRVWFF 225 (356)
Q Consensus 203 laIvRlILF~itw~~~g~~fWLF 225 (356)
+.+.|..+-+++++ +--.||||
T Consensus 163 if~fRa~ll~Lvfl-~~~syWLF 184 (505)
T PF06638_consen 163 IFVFRALLLVLVFL-FLFSYWLF 184 (505)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHH
Confidence 34556655554442 33457876
No 73
>PRK12361 hypothetical protein; Provisional
Probab=21.43 E-value=2.1e+02 Score=30.21 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=12.4
Q ss_pred CccccchhHHHHHHHH
Q 018428 245 KDEEEKPKWAARLFYA 260 (356)
Q Consensus 245 ~d~~~~~~~~~Rl~~~ 260 (356)
|+.+.+..|.+|++++
T Consensus 58 k~~~g~~~~~~~~l~~ 73 (547)
T PRK12361 58 KRQDGTIPWYIRWVFI 73 (547)
T ss_pred CCCCCcchHHHHHHHH
Confidence 6677788888898775
No 74
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=21.27 E-value=2.3e+02 Score=28.11 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=9.9
Q ss_pred hHHHHHHHHHhcCC
Q 018428 40 DVFQLFAEKVRDHK 53 (356)
Q Consensus 40 d~~~avA~~LR~~k 53 (356)
+..+...+..|-+|
T Consensus 28 ~~~~~y~~L~R~~k 41 (314)
T PRK12878 28 PWLRPYAQLARWDR 41 (314)
T ss_pred hhHHHHHHHHcccc
Confidence 45677788888764
No 75
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=21.11 E-value=3.1e+02 Score=25.64 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhccc
Q 018428 163 LLSFFWPVLTLAICLFPV 180 (356)
Q Consensus 163 l~~~lliv~ilai~LFPL 180 (356)
..++++++.++.-|.-|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~ 32 (205)
T PRK06231 15 SFSFLIISLFLVSCTENV 32 (205)
T ss_pred HHHHHHHHHHHHHccCCh
Confidence 345566777777777773
No 76
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=21.07 E-value=2.7e+02 Score=23.19 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHHHHHHHHhhcccCccc----chhhHHHHHHHHHHHHHHH
Q 018428 158 PLWQTLLSFFWPVLTLAICLFPVYPHR----CKLLILYSCAGVLLLILSL 203 (356)
Q Consensus 158 ~~~~~l~~~lliv~ilai~LFPLWP~~----~R~gVwYLSvglLgl~f~l 203 (356)
.++.-++.+++++|++=+|.|=|-+.. --+|-|=+.+||-.++.++
T Consensus 31 ~W~~p~m~~lmllGL~WiVvyYi~~~~i~pi~~lG~WN~~IGfg~~~~Gf 80 (87)
T PF06781_consen 31 RWYAPLMLGLMLLGLLWIVVYYISGGQIPPIPDLGNWNLAIGFGLMIVGF 80 (87)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhcccCCCCCcccccchHHHHHHHHHHHHH
Confidence 344466778889999888887776653 3466777777765444443
No 77
>PF13347 MFS_2: MFS/sugar transport protein
Probab=20.75 E-value=1.7e+02 Score=28.95 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=39.2
Q ss_pred HHHHHHHHhhcccCcccchhh----HHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHhC----Cceeeccccccccccc
Q 018428 168 WPVLTLAICLFPVYPHRCKLL----ILYSCAGVLL-LILSLLFVR---AAIFGMIWILLG----KRVWFFPNILAEEATL 235 (356)
Q Consensus 168 liv~ilai~LFPLWP~~~R~g----VwYLSvglLg-l~f~laIvR---lILF~itw~~~g----~~fWLFPNLFeD~~~~ 235 (356)
++..+.+++..|+||.-.|.. ++.++..+.+ ..+.+.++. ..++++..++.| .-+.+.+++..|+...
T Consensus 267 ~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~ 346 (428)
T PF13347_consen 267 LIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDY 346 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhh
Confidence 355666788889999866654 4544433221 122233333 333333333332 3467777788887766
Q ss_pred hhcc
Q 018428 236 RELF 239 (356)
Q Consensus 236 ~sff 239 (356)
+|..
T Consensus 347 ~e~~ 350 (428)
T PF13347_consen 347 DEWK 350 (428)
T ss_pred HHHh
Confidence 6653
No 78
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=20.57 E-value=1.6e+02 Score=23.59 Aligned_cols=23 Identities=17% Similarity=-0.073 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 018428 187 LLILYSCAGVLLLILSLLFVRAA 209 (356)
Q Consensus 187 ~gVwYLSvglLgl~f~laIvRlI 209 (356)
.|.-|-+++++++.|.+..+|+|
T Consensus 26 kGag~Aav~~~~~~~~l~~~~~i 48 (67)
T PF11511_consen 26 KGAGYAAVFFLGLWFLLVALYFI 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHH
Confidence 67778888888777777666654
No 79
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.50 E-value=4.7e+02 Score=23.71 Aligned_cols=29 Identities=17% Similarity=0.597 Sum_probs=16.2
Q ss_pred HHHHHHHHH-HHHHHHHhhcccCcccchhhH
Q 018428 160 WQTLLSFFW-PVLTLAICLFPVYPHRCKLLI 189 (356)
Q Consensus 160 ~~~l~~~ll-iv~ilai~LFPLWP~~~R~gV 189 (356)
|+.+.+++. =++++++.|+|+ |...|.++
T Consensus 5 ~~lvf~~L~~Ei~~~~lL~lPl-p~~~R~~i 34 (192)
T PF05529_consen 5 WSLVFGLLYAEIAVLLLLVLPL-PSPIRRKI 34 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CcHHHHHH
Confidence 555655554 344555566674 65566554
No 80
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=20.12 E-value=1.8e+02 Score=26.44 Aligned_cols=28 Identities=32% Similarity=0.298 Sum_probs=18.5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHH
Q 018428 182 PHRCKLLILYSCAGVLLLILSLLFVRAA 209 (356)
Q Consensus 182 P~~~R~gVwYLSvglLgl~f~laIvRlI 209 (356)
...-|...++..+|++.++++...+|++
T Consensus 182 ~~~gr~~a~~~i~gf~~~~~~~~gv~~~ 209 (214)
T PF01578_consen 182 GWRGRRAAYLSIIGFLLLLLSYFGVNLL 209 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666667777777776666664
Done!