Query 018428
Match_columns 356
No_of_seqs 132 out of 181
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 15:07:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cso_A Pleckstrin; DEP domain, 96.2 0.027 9.3E-07 48.1 9.5 70 41-116 17-88 (127)
2 1uhw_A Pleckstrin; three-helix 95.9 0.0078 2.7E-07 50.3 4.7 96 42-156 8-106 (109)
3 1fsh_A Dishevelled-1; three-he 95.6 0.024 8.1E-07 46.6 6.6 70 41-115 20-91 (105)
4 2ysr_A DEP domain-containing p 95.4 0.025 8.6E-07 46.5 5.9 72 40-115 12-87 (105)
5 1v3f_A Pleckstrin 2; three-hel 95.1 0.056 1.9E-06 45.4 7.2 68 42-115 8-77 (120)
6 3ml6_A Chimeric complex betwee 91.6 0.66 2.2E-05 45.8 9.3 71 42-117 9-81 (385)
7 2pbi_A Regulator of G-protein 90.9 0.45 1.5E-05 47.8 7.3 70 39-115 19-90 (424)
8 3m73_A Tellurite resistance pr 24.7 1.1E+02 0.0039 28.5 6.0 54 158-212 12-67 (314)
9 2dw3_A Intrinsic membrane prot 22.5 85 0.0029 24.6 3.8 23 187-209 28-50 (77)
10 3rko_A NADH-quinone oxidoreduc 19.0 1.5E+02 0.0051 25.5 5.1 16 172-188 80-95 (147)
No 1
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=96.18 E-value=0.027 Score=48.14 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=55.5
Q ss_pred HHHHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeecc
Q 018428 41 VFQLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRV 116 (356)
Q Consensus 41 ~~~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~ 116 (356)
-..++++.+.+ +.|++.|+-....+ --.-|-|.++|+||..+..+ .+| .+|..+++.|++.|+|.++...
T Consensus 17 ~l~~Lv~~Mqd~~~GV~~~~r~~~~~~~~~cF~GsdlVdWLl~~~~~-----~sR-~EAv~lg~~Ll~~G~i~hV~d~ 88 (127)
T 2cso_A 17 DLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSNQSV-----RNR-QEGLMIASSLLNEGYLQPAGDM 88 (127)
T ss_dssp CHHHHHHHHHSSSSSCCCEEEEETTEEEEEEEEHHHHHHHHHHTTSC-----SSH-HHHHHHHHHHHHHTSSEEESHH
T ss_pred CHHHHHHHHhCCCCCceeeeEEeccEEecceeechHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCeEEeCccc
Confidence 37889999996 57888776666654 44679999999999976533 445 4899999999999999999764
No 2
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=95.89 E-value=0.0078 Score=50.25 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=67.6
Q ss_pred HHHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccccc
Q 018428 42 FQLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVVKT 119 (356)
Q Consensus 42 ~~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~~~ 119 (356)
..++++.+++ +.|+|.|+-....+ --.-|-|.++|+||.++..+ .+| .+|..+++.|+++|+|.++....+.
T Consensus 8 l~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~GselVdWLi~~~~~-----~~R-~EAv~lgq~Ll~~G~i~hV~d~~~~ 81 (109)
T 1uhw_A 8 LGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKLV-----RNR-QEGLMISASLLSEGYLQPAGDLSKN 81 (109)
T ss_dssp HHHHHHHHHCTTTSCCCEEEESSSCEEEEECCHHHHHHHHHHHTSS-----SSH-HHHHHHHHHHHHHTSSEECSSSHHH
T ss_pred HHHHHHHHhCCCCCceeeeeEECCEEccccccchHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCeEEeCcccccc
Confidence 6678888885 57888776666554 45679999999999975533 455 4899999999999999998764321
Q ss_pred cCCCCCCCCCCCcceeecCCcccCCC-CceEEEEecCC
Q 018428 120 LRPGKKKLSTWPAHLEIFPEQVFSDN-DAFFAWTFEKG 156 (356)
Q Consensus 120 ~~pgK~K~~K~P~~L~i~~~Q~F~d~-d~yYvW~Ye~~ 156 (356)
. ++=..+..|.|+ +.||-+.=++|
T Consensus 82 ~-------------~~~~~~~~F~D~~~~lYrF~~~~~ 106 (109)
T 1uhw_A 82 A-------------ADGIAENPFLDSPDAFYYFPDSGP 106 (109)
T ss_dssp H-------------HHHSSSCCCCCCSSCCEECTTSSS
T ss_pred c-------------cccccccceecCCCcEEEEcCCCC
Confidence 1 111224567554 47887765554
No 3
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=95.64 E-value=0.024 Score=46.57 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=50.4
Q ss_pred HHHHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 41 VFQLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 41 ~~~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
...+|++-+++ +.|++.|.-....+ --.=|-|.++|+||+++-+. + .+| .+|.++++.|++.|+|..+.+
T Consensus 20 ~l~~iv~~M~~p~~Gv~i~dr~~~~~~~~~~F~G~dlVdWL~~~~~~---~-~~r-~eAv~lg~~Ll~~G~I~hv~~ 91 (105)
T 1fsh_A 20 DMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEG---F-KER-REARKYASSMLKHGFLRHTVN 91 (105)
T ss_dssp CHHHHHHHHHSTTSSSCSSCEEETTEEESSCCHHHHHHHHHHHHCCC---C-SSH-HHHHHHHHHHHHTTTEECSSS
T ss_pred CHHHHHHHHhCCCCCceeEEeEeCCEECCceeEcHHHHHHHHHhCcC---C-CCH-HHHHHHHHHHHHCCcEEEcCC
Confidence 35667777765 45777665544443 34569999999999976531 1 345 389999999999999999643
No 4
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.41 E-value=0.025 Score=46.46 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhcCCCCccceeeecCceEeEeehHHHHHHHhcC----ccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 40 DVFQLFAEKVRDHKDLESRWAVLQETRVEYFRGKDFVSFLRNH----PEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 40 d~~~avA~~LR~~k~lK~R~gil~gkrVdyFRGkraVraL~~~----p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
..-.+++..+|...++|.|.--+. .--+-|.|+++|++|+++ +...+ ..+| .+|..+++.|++.|+|..|..
T Consensus 12 ~lw~~ii~~~~~g~~ikdrr~~lk-~y~~CF~GsE~VdWL~~~l~~~~~fg~--~~sR-~eAv~lgq~Ll~~gvi~hV~~ 87 (105)
T 2ysr_A 12 KLWNEVTTSFRAGMPLRKHRQHFK-KYGNCFTAGEAVDWLYDLLRNNSNFGP--EVTR-QQTIQLLRKFLKNHVIEDIKG 87 (105)
T ss_dssp HHHHHHHHHHHHSCSCCCCCCSSS-SCSSCEEHHHHHHHHHHHHHHSSSSTT--TCCH-HHHHHHHHHHHHTTSSEESSC
T ss_pred HHHHHHHHHHHcCCCcceeeeCCE-ECCccccchHHHHHHHHhcccccccCc--cCCH-HHHHHHHHHHHHCCCeEeccC
Confidence 356678899998777777653332 234579999999999864 33222 2445 389999999999999999743
No 5
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=95.07 E-value=0.056 Score=45.38 Aligned_cols=68 Identities=22% Similarity=0.307 Sum_probs=47.0
Q ss_pred HHHHHHHHhc-CCCCccceeeecC-ceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 42 FQLFAEKVRD-HKDLESRWAVLQE-TRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 42 ~~avA~~LR~-~k~lK~R~gil~g-krVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
..+|++-+.+ ..+++.|.-..+. .--+-|.|.++|+||.++... .+| .+|..+++.|+++|+|..+..
T Consensus 8 l~~L~~~m~~~~~Gv~i~~rr~~~k~y~~cF~GsdlVdWL~~~~~~-----~sR-~eAv~lgq~Ll~~G~i~hV~~ 77 (120)
T 1v3f_A 8 LHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFA-----ASR-LEAVTLASMLMEENFLRPVGV 77 (120)
T ss_dssp HHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSC-----SSH-HHHHHHHHHHHHHTSEEECSS
T ss_pred HHHHHHHHhCccCCCeeeeeEEccEEccceeehHHHHHHHHHcCCC-----CCH-HHHHHHHHHHHHCCCeEEccc
Confidence 4556666654 3455443222222 234679999999999987533 445 489999999999999999863
No 6
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=91.61 E-value=0.66 Score=45.79 Aligned_cols=71 Identities=24% Similarity=0.269 Sum_probs=52.7
Q ss_pred HHHHHHHHhcC-CCCccceeeecC-ceEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeeccc
Q 018428 42 FQLFAEKVRDH-KDLESRWAVLQE-TRVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDRVV 117 (356)
Q Consensus 42 ~~avA~~LR~~-k~lK~R~gil~g-krVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K~~ 117 (356)
..++++-+++. .|++.|.-.... .--.-|-|.++|+||.++-+. ..+| .+|..+++.|++.|+|..+.+.+
T Consensus 9 l~~i~~~M~~~~~Gl~i~dr~~~~~~~~~~F~G~elVdWL~~~~~~----~~~R-~eA~~~g~~Ll~~G~i~hv~~~~ 81 (385)
T 3ml6_A 9 MASVTKAMAAPESGLEVRDRMWLKITIPNAFLGSDVVDWLYHHVEG----FPER-REARKYASGLLKAGLIRHTVNKI 81 (385)
T ss_dssp HHHHHHHHHSTTSSSCCEEECCSSCCEEEEEEHHHHHHHHHHTCCS----CSSH-HHHHHHHHHHHHHSSEEESSSCS
T ss_pred HHHHHHHhhCCCCCceeEeeEECcEECCCeEEhHHHHHHHHHccCC----CCCH-HHHHHHHHHHHhCCcEEEcCCcc
Confidence 55688888874 488777654443 344679999999999976431 1445 38999999999999999987543
No 7
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=90.89 E-value=0.45 Score=47.79 Aligned_cols=70 Identities=10% Similarity=0.188 Sum_probs=51.0
Q ss_pred chHHHHHHHHHhc-CCCCccceeeecCc-eEeEeehHHHHHHHhcCccccccccCCChHHHHHHHHHHHhcCceeeeec
Q 018428 39 KDVFQLFAEKVRD-HKDLESRWAVLQET-RVEYFRGKDFVSFLRNHPEVKDILESDRNLETEDIANALLSKNLLVRCDR 115 (356)
Q Consensus 39 ~d~~~avA~~LR~-~k~lK~R~gil~gk-rVdyFRGkraVraL~~~p~~~~~L~~dr~~~a~~~~~~LL~~~~~~Rv~K 115 (356)
..-.-+|+.-.++ +.|++.|+-....+ -=.-|.|.++|+||+++-.+ + + .+|..++..|+++|||+++..
T Consensus 19 ~~~~e~lv~~M~~~~~Gv~i~~~~~~~~~~p~~F~Gsd~V~WL~~~~~~-----~-~-~EA~~lg~~L~~~Gyi~~v~d 90 (424)
T 2pbi_A 19 LQKIEALVKDMQNPETGVRMHNQRVLVTSVPHAMTGGDVLQWITQRLWI-----S-N-LEAQNLGNFIVKYGYIYPLQD 90 (424)
T ss_dssp HHHHHHHHHHHTCTTTSCCCCCCSSCCCSSCCCEEHHHHHHHHHHHHTC-----C-H-HHHHHHHHHHHHTTSEEESSS
T ss_pred hhhHHHHHHHHhCCCCCCCccceeecceeCCCccccHHHHHHHHHcCCC-----C-h-HHHHHHHHHHHHCCCEEeCCc
Confidence 3345566666665 55888876654443 44679999999999966532 2 2 489999999999999999744
No 8
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha helical integral membrane protein, STRU genomics, PSI-2; HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A* 3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A* 3m78_A* 3m76_A* 3m72_A*
Probab=24.67 E-value=1.1e+02 Score=28.49 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHHHHHHhh--cccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018428 158 PLWQTLLSFFWPVLTLAICL--FPVYPHRCKLLILYSCAGVLLLILSLLFVRAAIFG 212 (356)
Q Consensus 158 ~~~~~l~~~lliv~ilai~L--FPLWP~~~R~gVwYLSvglLgl~f~laIvRlILF~ 212 (356)
++....||.+.+...+...- +| ||..+...+|++++.+..++.++-++|++.|-
T Consensus 12 ~~F~~~MGtg~la~~~~~~~~~~~-~~~~i~~~l~~l~~~l~~~l~~~~~~r~~~~p 67 (314)
T 3m73_A 12 GYFGIPLGLAALSLAWFHLENLFP-AARMVSDVLGIVASAVWILFILMYAYKLRYYF 67 (314)
T ss_dssp GGGHHHHHHHHHHHHHHTTTTTCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34445566655444433221 22 56677788888888888888888888988764
No 9
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=22.50 E-value=85 Score=24.62 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 018428 187 LLILYSCAGVLLLILSLLFVRAA 209 (356)
Q Consensus 187 ~gVwYLSvglLgl~f~laIvRlI 209 (356)
.|.-|-+++++++.|.+..+|+|
T Consensus 28 kGAg~AAv~f~~~~~~lv~l~~i 50 (77)
T 2dw3_A 28 KGAGWAGGVFFGTLLLIGFFRVV 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHHHHHH
Confidence 67778888888877777666654
No 10
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=19.03 E-value=1.5e+02 Score=25.47 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=10.7
Q ss_pred HHHHhhcccCcccchhh
Q 018428 172 TLAICLFPVYPHRCKLL 188 (356)
Q Consensus 172 ilai~LFPLWP~~~R~g 188 (356)
+=.+.+|| |....+..
T Consensus 80 vEi~~L~P-wa~~~~~~ 95 (147)
T 3rko_A 80 VEALYLFA-WSTSIRES 95 (147)
T ss_dssp HHHHHHHH-HHHSSTTT
T ss_pred HHHHHHHH-HHHHHhhh
Confidence 34667789 88776643
Done!