BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018429
(356 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JNI1|LYSM1_BOVIN LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Bos taurus GN=LYSMD1 PE=2 SV=1
Length = 225
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 19 IEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
+EHQ++ DTLAG+A+KYGV + IKR N L T+ +F KTLHIP+
Sbjct: 40 LEHQLAPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLHIPI 86
>sp|Q9D0E3|LYSM1_MOUSE LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Mus musculus GN=Lysmd1 PE=1 SV=1
Length = 226
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 19 IEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
+EHQ+ DTLAG+A+KYGV + IKR N L T+ +F KTL+IP+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPI 86
>sp|Q5HZA4|LYSM1_RAT LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Rattus norvegicus GN=Lysmd1 PE=2 SV=1
Length = 227
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 19 IEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
+EHQ+ DTLAG+A+KYGV + IKR N L T+ +F KTL+IP+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPI 86
>sp|Q96S90|LYSM1_HUMAN LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Homo sapiens GN=LYSMD1 PE=1 SV=1
Length = 227
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 19 IEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
+EHQ+ DTLAG+A+KYGV + IKR N L T+ +F KTL+IP+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 86
>sp|Q9N012|LYSM1_MACFA LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Macaca fascicularis GN=LYSMD1 PE=2 SV=1
Length = 227
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 19 IEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
+EHQ+ DTLAG+A+KYGV + IKR N L T+ +F KTL+IP+
Sbjct: 40 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 86
>sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Danio rerio GN=lysmd2 PE=2 SV=1
Length = 208
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 15 GWNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
G YIEH+V+ +TL G+A+KYGV + IKR+N L ++ +F TL IP+
Sbjct: 61 GEKYIEHRVTDGETLQGIALKYGVTMEQIKRVNKLFSNDCIFLRNTLSIPV 111
>sp|Q8IV50|LYSM2_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Homo sapiens GN=LYSMD2 PE=1 SV=1
Length = 215
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 18 YIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHP 70
++EH+V DTL G+A+KYGV + IKR N L T+ +F KTL+IP+ P
Sbjct: 70 HVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPVISEKP 122
>sp|Q1JQA8|LYSM2_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Bos taurus GN=LYSMD2 PE=2 SV=1
Length = 215
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 18 YIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHP 70
++EH+V DTL G+A+KYGV + IKR N L T+ +F KTL+IP+ P
Sbjct: 71 HVEHRVRAGDTLQGIALKYGVSMEQIKRANKLFTNDCIFLKKTLNIPVISEKP 123
>sp|Q6P606|LYSM4_DANRE LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Danio rerio GN=lysmd4 PE=2 SV=2
Length = 267
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 19 IEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPG----------- 67
+E +S D L+ +A++YG +VADIKR+N L + M+ALK++ IP+
Sbjct: 70 LERDISHEDNLSKLALQYGCKVADIKRVNNLFQEQDMYALKSIKIPVRKHGLLTEAISEL 129
Query: 68 RHPPS-PSLSDGSSSSGENSMERTPPRLGYSNILQSLESLRTESSKKGSLATGTSQKVSS 126
R P PS S+S S+ P Y+N L+ +++ ++ T ++V S
Sbjct: 130 RTPQQRPSHDAAPSNSAMASVSGRPQVQEYTNYLKEVDN----DIERLIQNTDNVEEVFS 185
Query: 127 AMSNLQKYYGLRSPNGK--GKDEGTE 150
A S + + +G RS + G D G +
Sbjct: 186 ASSRVSRGWGWRSQRLRSNGADWGIQ 211
>sp|Q9D7V2|LYSM2_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Mus musculus GN=Lysmd2 PE=2 SV=2
Length = 215
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 17 NYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHP 70
++EH+V DTL G+A+KYGV + IKR N L T+ +F KTL IP+ P
Sbjct: 69 RHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLSIPILSEKP 122
>sp|Q3B7I8|LYSM2_XENTR LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Xenopus tropicalis GN=lysmd2 PE=2 SV=1
Length = 207
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 18 YIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
YIEH++S DTL G+A+KYGV + IKR N L + +F K+L+IP+
Sbjct: 60 YIEHRLSPSDTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSLNIPV 107
>sp|Q6DCC7|LYSM4_XENLA LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Xenopus laevis GN=lysmd4 PE=2 SV=1
Length = 289
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 35/47 (74%)
Query: 19 IEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
+E +++ D L +A++YG +V+DIKR+N L TD ++ALKT+ IP+
Sbjct: 71 LERAITEDDNLNKLALQYGCKVSDIKRVNNLITDQDIYALKTIKIPV 117
>sp|Q3KPL3|LYSM2_XENLA LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Xenopus laevis GN=lysmd2 PE=2 SV=2
Length = 206
Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 18 YIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
YIEH +S DTL G+A+KYGV + IKR N L + +F K+L+IP+
Sbjct: 58 YIEHCLSPSDTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSLNIPV 105
>sp|Q5PQ30|LYSM1_XENLA LysM and putative peptidoglycan-binding domain-containing protein
1 OS=Xenopus laevis GN=lysmd1 PE=2 SV=1
Length = 215
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 19 IEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIP 64
+EHQV DTL G+A++YGV + IKR N L T+ +F K+L+IP
Sbjct: 37 LEHQVQPGDTLQGLALRYGVSMEQIKRANRLYTNDSIFLKKSLYIP 82
>sp|Q99LE3|LYSM3_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Mus musculus GN=Lysmd3 PE=2 SV=1
Length = 305
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 17/68 (25%)
Query: 27 DTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHI-------------PLPGRH---- 69
DTL VA++Y VADIKR+N L +D FAL+++ I PL GRH
Sbjct: 73 DTLNAVALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKRFSSLTETLHPLKGRHILHP 132
Query: 70 PPSPSLSD 77
PP P +
Sbjct: 133 PPVPYFQE 140
>sp|Q7Z3D4|LYSM3_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Homo sapiens GN=LYSMD3 PE=1 SV=2
Length = 306
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 27 DTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
DTL +A++Y VADIKR+N L +D FAL+++ IP+
Sbjct: 73 DTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPV 111
>sp|Q6IQA2|LYSM3_DANRE LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Danio rerio GN=lysmd3 PE=2 SV=1
Length = 305
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 18 YIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
Y+ ++ + DTL ++++Y VADIKR N L T+ FAL++L IP+
Sbjct: 67 YLIREIKEGDTLISISLQYFCTVADIKRANNLLTEQDFFALRSLRIPV 114
>sp|Q5M836|LYSM3_RAT LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Rattus norvegicus GN=Lysmd3 PE=2 SV=1
Length = 300
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 27 DTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
DTL VA++Y VADIKR+N L +D FAL+++ IP+
Sbjct: 73 DTLNAVALQYCCTVADIKRVNNLISDQDFFALRSIKIPV 111
>sp|Q28DG6|LYSM3_XENTR LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Xenopus tropicalis GN=lysmd3 PE=2 SV=1
Length = 262
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 18 YIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
YI + + DTL +A++Y VAD+KR N + FAL+T+ IP+
Sbjct: 69 YISRDICEGDTLNSIALQYCCTVADLKRANNFLNEQDFFALRTIKIPV 116
>sp|Q5ZKK0|LYSM3_CHICK LysM and putative peptidoglycan-binding domain-containing protein 3
OS=Gallus gallus GN=LYSMD3 PE=2 SV=1
Length = 300
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 27 DTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
DTL +A++Y VADIKR+N L D FAL+++ IP+
Sbjct: 72 DTLNAIALQYCCSVADIKRVNNLINDQDFFALRSIKIPV 110
>sp|Q9FZ32|FB60_ARATH F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1
SV=1
Length = 221
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 14 NG-WNY-IEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
NG W + I H++ + D++ +A+KY V+V DIKRLN + +D +++ L IP+
Sbjct: 67 NGIWKFAISHRICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIPI 120
>sp|Q5XG99|LYSM4_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Homo sapiens GN=LYSMD4 PE=2 SV=2
Length = 296
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 5 SGINS--NGGANGWNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLH 62
SG++ GA ++ ++++ D+L +A++YG +VADIK++N + ++ALK++
Sbjct: 58 SGVHQPPQAGAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSVK 117
Query: 63 IPL 65
IP+
Sbjct: 118 IPV 120
>sp|Q8CC84|LYSM4_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Mus musculus GN=Lysmd4 PE=2 SV=1
Length = 293
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 36/54 (66%)
Query: 12 GANGWNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
GA ++ ++++ D+L +A++YG +VADIK+ N + ++ALK++ IP+
Sbjct: 64 GAGTMVLLQRELAQEDSLNKLALQYGCKVADIKKANNFIREQDLYALKSIKIPV 117
>sp|P0CY38|Y2072_EMENI Uncharacterized protein AN12072 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=AN12072 PE=4 SV=1
Length = 623
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 18 YIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65
Y+ HQV DT+ GV I+YG + A +++NG + A KT+ +P+
Sbjct: 239 YV-HQVQPTDTITGVTIRYGCQAAIFRKVNGFWPSDSIQARKTVLLPV 285
>sp|Q5REP3|LYSM4_PONAB LysM and putative peptidoglycan-binding domain-containing protein 4
OS=Pongo abelii GN=LYSMD4 PE=2 SV=1
Length = 296
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 5 SGINS--NGGANGWNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLH 62
SG++ GA ++ ++++ D+L +A++YG +VADIK++N + ++ALK++
Sbjct: 58 SGVHQPHQAGAGDVVLLQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSIK 117
Query: 63 IPL 65
P+
Sbjct: 118 SPV 120
>sp|P37710|ALYS_ENTFA Autolysin OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=EF_0799 PE=3 SV=2
Length = 737
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHI 63
H V D+L G++++YG+ + IK+LNGL+ D ++ +TL +
Sbjct: 695 HTVKSGDSLWGLSMQYGISIQKIKQLNGLSGD-TIYIGQTLKV 736
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 6 GINSNGGANGWNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTL 61
G N+ G N + + V DTL +A +YGV VA+++ NG++ DL K +
Sbjct: 352 GSNNQSGTNTY----YTVKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFVGQKLI 403
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTL 61
+ V DTL +A +YGV VA+++ NG++ DL K +
Sbjct: 431 YTVKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFVGQKLI 471
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFA 57
+ + DTL +A +YGV VA+++ NG++ DL +FA
Sbjct: 499 YTIKSGDTLNKIAAQYGVSVANLRSWNGISGDL-IFA 534
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 8 NSNGGANGWNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHI 63
N+ GGA + + DTL ++ ++GV VA+++ NG+ DL +FA +T+ +
Sbjct: 624 NNGGGAT----TSYTIKSGDTLNKISAQFGVSVANLRSWNGIKGDL-IFAGQTIIV 674
>sp|Q7A5Y8|LYTN_STAAN Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
N315) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHPPSP 73
+ V K DTL+ +A+KY V++I+ N +A +F + L +P+ P P
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q99UM3|LYTN_STAAM Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHPPSP 73
+ V K DTL+ +A+KY V++I+ N +A +F + L +P+ P P
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q7A123|LYTN_STAAW Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MW2) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHPPSP 73
+ V K DTL+ +A+KY V++I+ N +A +F + L +P+ P P
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q6G9W6|LYTN_STAAS Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MSSA476) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHPPSP 73
+ V K DTL+ +A+KY V++I+ N +A +F + L +P+ P P
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q6GHI8|LYTN_STAAR Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
MRSA252) GN=lytN PE=3 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHPPSP 73
+ V K DTL+ +A+KY V++I+ N +A +F + L +P+ P P
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q9ZNI1|LYTN_STAA8 Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
NCTC 8325) GN=lytN PE=2 SV=2
Length = 383
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHPPSP 73
+ V K DTL+ +A+KY V++I+ N +A +F + L +P+ P P
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKP 229
>sp|Q5HGI5|LYTN_STAAC Probable cell wall hydrolase LytN OS=Staphylococcus aureus (strain
COL) GN=lytN PE=3 SV=1
Length = 383
Score = 35.8 bits (81), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHPPSP 73
+ V K DTL+ +A+KY V++I+ N +A +F + L +P+ P P
Sbjct: 177 YTVKKGDTLSAIALKYKTTVSNIQNTNNIANPNLIFIGQKLKVPMTPLVEPKP 229
>sp|O32062|SAFA_BACSU SpoIVD-associated factor A OS=Bacillus subtilis (strain 168)
GN=safA PE=1 SV=1
Length = 387
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLAT--DLQMFALKT 60
H V K D+L +A KYGV+V ++K+LN + DL M +K
Sbjct: 4 HIVQKGDSLWKIAEKYGVDVEEVKKLNTQLSNPDLIMPGMKI 45
>sp|P54421|LYTE_BACSU Probable peptidoglycan endopeptidase LytE OS=Bacillus subtilis
(strain 168) GN=lytE PE=1 SV=1
Length = 334
Score = 32.7 bits (73), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDL----QMFALK 59
++V D+L ++ KYG+ + ++K+LNGL +DL Q+ LK
Sbjct: 88 YKVKSGDSLWKISKKYGMTINELKKLNGLKSDLLRVGQVLKLK 130
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLATDL 53
++V D+L+ +A KYG V+ +K LNGL +D+
Sbjct: 151 YKVKSGDSLSKIASKYGTTVSKLKSLNGLKSDV 183
>sp|P0AEZ7|MLTD_ECOLI Membrane-bound lytic murein transglycosylase D OS=Escherichia coli
(strain K12) GN=mltD PE=1 SV=1
Length = 452
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 13 ANGWNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQ 54
AN + I ++V K D+L+ +A ++GV + D+ R N +LQ
Sbjct: 394 ANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQ 435
>sp|P0AEZ8|MLTD_ECOL6 Membrane-bound lytic murein transglycosylase D OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=mltD PE=3
SV=1
Length = 452
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 13 ANGWNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQ 54
AN + I ++V K D+L+ +A ++GV + D+ R N +LQ
Sbjct: 394 ANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQ 435
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.126 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,818,519
Number of Sequences: 539616
Number of extensions: 6006362
Number of successful extensions: 16675
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 15920
Number of HSP's gapped (non-prelim): 522
length of query: 356
length of database: 191,569,459
effective HSP length: 118
effective length of query: 238
effective length of database: 127,894,771
effective search space: 30438955498
effective search space used: 30438955498
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)