Query 018429
Match_columns 356
No_of_seqs 164 out of 829
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 15:08:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eby_A Chitin elicitor recepto 99.6 9.7E-17 3.3E-21 146.6 4.8 109 17-157 8-129 (212)
2 4eby_A Chitin elicitor recepto 99.5 4.4E-14 1.5E-18 129.1 9.9 105 18-153 78-186 (212)
3 2djp_A Hypothetical protein SB 99.4 2.6E-13 8.8E-18 104.2 6.6 56 14-69 11-66 (77)
4 1e0g_A Membrane-bound lytic mu 99.3 1.6E-12 5.3E-17 90.5 5.5 47 18-66 2-48 (48)
5 2l9y_A CVNH-LYSM lectin; carbo 99.3 2.1E-12 7E-17 114.3 4.9 85 17-125 61-146 (167)
6 2gu1_A Zinc peptidase; alpha/b 99.3 7.1E-13 2.4E-17 128.5 1.6 133 16-156 5-153 (361)
7 4a1k_A Putative L, D-transpept 98.4 3E-07 1E-11 80.7 5.4 47 18-65 2-48 (165)
8 2djp_A Hypothetical protein SB 97.6 2.4E-05 8.2E-10 59.6 2.8 47 105-157 17-64 (77)
9 2gu1_A Zinc peptidase; alpha/b 97.5 6.4E-05 2.2E-09 72.8 4.2 49 18-66 100-153 (361)
10 2l9y_A CVNH-LYSM lectin; carbo 97.2 0.00013 4.5E-09 64.3 2.2 47 105-157 64-111 (167)
11 1e0g_A Membrane-bound lytic mu 97.1 8.6E-05 2.9E-09 51.0 0.5 42 105-154 4-46 (48)
12 3slu_A M23 peptidase domain pr 97.0 0.0011 3.7E-08 65.2 7.3 56 12-67 8-67 (371)
13 4a1k_A Putative L, D-transpept 68.1 1.5 5.1E-05 38.0 0.9 42 104-153 3-46 (165)
14 2lfc_A Fumarate reductase, fla 66.4 3.3 0.00011 35.2 2.7 28 22-49 91-122 (160)
15 2glo_A Brinker CG9653-PA; prot 50.7 8.6 0.00029 27.1 2.2 25 23-47 18-46 (59)
16 1tc3_C Protein (TC3 transposas 49.0 17 0.00059 22.9 3.4 24 24-47 19-42 (51)
17 1jko_C HIN recombinase, DNA-in 44.7 13 0.00046 24.0 2.3 24 23-46 18-41 (52)
18 2jn6_A Protein CGL2762, transp 43.3 16 0.00053 27.8 2.8 22 26-47 23-44 (97)
19 2elh_A CG11849-PA, LD40883P; s 43.1 19 0.00064 27.3 3.3 24 23-46 35-58 (87)
20 4abx_A DNA repair protein RECN 39.1 17 0.0006 31.3 2.8 20 27-46 132-151 (175)
21 1rr7_A Middle operon regulator 38.7 21 0.00073 29.8 3.2 21 26-46 92-112 (129)
22 2jrt_A Uncharacterized protein 33.5 30 0.001 27.6 3.2 30 21-50 44-73 (95)
23 2x48_A CAG38821; archeal virus 29.4 49 0.0017 22.2 3.3 23 24-46 29-51 (55)
24 2rn7_A IS629 ORFA; helix, all 28.1 21 0.00071 27.6 1.3 22 26-47 30-51 (108)
25 3slu_A M23 peptidase domain pr 26.8 59 0.002 31.8 4.5 44 24-67 115-162 (371)
26 2cob_A LCOR protein; MLR2, KIA 23.8 38 0.0013 26.3 2.1 41 23-63 26-68 (70)
27 1pdn_C Protein (PRD paired); p 23.6 53 0.0018 24.8 2.9 24 23-46 30-53 (128)
28 1y0p_A Fumarate reductase flav 23.3 39 0.0013 33.5 2.5 27 23-49 441-471 (571)
29 2o8x_A Probable RNA polymerase 20.9 82 0.0028 21.7 3.2 23 24-46 29-51 (70)
30 1u78_A TC3 transposase, transp 20.4 66 0.0022 25.1 2.9 25 23-47 19-43 (141)
31 2p7v_B Sigma-70, RNA polymeras 20.1 93 0.0032 21.9 3.4 22 25-46 24-45 (68)
No 1
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.63 E-value=9.7e-17 Score=146.61 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=89.1
Q ss_pred CeEEEEecCCCCHHHHHHHhCCCH--------HHHHHHh-CCCCCCcccCCCEEEeCCCCCCCCCCCCCCCCCCCCCCCc
Q 018429 17 NYIEHQVSKMDTLAGVAIKYGVEV--------ADIKRLN-GLATDLQMFALKTLHIPLPGRHPPSPSLSDGSSSSGENSM 87 (356)
Q Consensus 17 ~~i~H~VkkGDTL~~IA~KYgVsV--------~dIKraN-nL~sd~~L~~GQ~L~IPv~~~~~~s~~~s~~s~~~~e~k~ 87 (356)
.|..|+|++||||+.||++|||++ ++|+++| +|...+.|++||.|+||...... . . .
T Consensus 8 a~~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~~~~~~------~-~-~------ 73 (212)
T 4eby_A 8 ALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPFPCECQ------P-G-D------ 73 (212)
T ss_dssp EEEEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEECCEEE------T-T-T------
T ss_pred ceEEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEecccccc------C-C-c------
Confidence 578899999999999999999999 9999999 99766789999999999752110 0 0 0
Q ss_pred ccCCCCCCcchhhhhcccccccCCCCCCCcc-c-cccc--cChhHHHHHHHhCCCCCCCCCCCCCceEEEeeCC
Q 018429 88 ERTPPRLGYSNILQSLESLRTESSKKGSLAT-G-TSQK--VSSAMSNLQKYYGLRSPNGKGKDEGTEMAVYRTG 157 (356)
Q Consensus 88 ~~aq~~~~~~~~le~~~s~~vKsg~~dsLw~-g-q~~k--VSpaM~~L~~wnGL~p~~~~~l~~GqeLvv~~~~ 157 (356)
.......|+|++| |+||. + +++. |++ ..|+.||++.+ +.+.+||+|.|....
T Consensus 74 -----------~~~~~~~Y~V~~G--DTL~~IA~~~y~~lvt~--~~L~~~N~~~~---~~l~~Gq~L~IP~~~ 129 (212)
T 4eby_A 74 -----------FLGHNFSYSVRQE--DTYERVAISNYANLTTM--ESLQARNPFPA---TNIPLSATLNVLVNC 129 (212)
T ss_dssp -----------EEEEEEEEECCTT--CCHHHHHHTTTTTSSCH--HHHHHHCCSCT---TCCCTTCEEEEEEEC
T ss_pred -----------cccCceEEEecCC--CcHHHHHHHhcCCCCCH--HHHHHhcCCCc---ccCCCCCEEEEcCCC
Confidence 0001124999999 99999 9 8999 988 99999999765 679999999997643
No 2
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.51 E-value=4.4e-14 Score=129.07 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=80.8
Q ss_pred eEEEEecCCCCHHHHH-HHhC--CCHHHHHHHhCCCCCCcccCCCEEEeCCCCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 018429 18 YIEHQVSKMDTLAGVA-IKYG--VEVADIKRLNGLATDLQMFALKTLHIPLPGRHPPSPSLSDGSSSSGENSMERTPPRL 94 (356)
Q Consensus 18 ~i~H~VkkGDTL~~IA-~KYg--VsV~dIKraNnL~sd~~L~~GQ~L~IPv~~~~~~s~~~s~~s~~~~e~k~~~aq~~~ 94 (356)
...|+|++||||+.|| ++|+ |++++|+++|++. .+.|++||.|.||.....+.. .. . ....
T Consensus 78 ~~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~~~-~~~l~~Gq~L~IP~~~~~~~~---~~---~---------~~~~ 141 (212)
T 4eby_A 78 NFSYSVRQEDTYERVAISNYANLTTMESLQARNPFP-ATNIPLSATLNVLVNCSCGDE---SV---S---------KDFG 141 (212)
T ss_dssp EEEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCCSC-TTCCCTTCEEEEEEECCCCCT---TT---C---------SSCC
T ss_pred ceEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcCCC-cccCCCCCEEEEcCCCcCCCc---cc---c---------cCCC
Confidence 4679999999999999 7999 9999999999965 568999999999986432111 00 0 0000
Q ss_pred CcchhhhhcccccccCCCCCCCcc-ccccccChhHHHHHHHhCCCCCCCCCCCCCceEEE
Q 018429 95 GYSNILQSLESLRTESSKKGSLAT-GTSQKVSSAMSNLQKYYGLRSPNGKGKDEGTEMAV 153 (356)
Q Consensus 95 ~~~~~le~~~s~~vKsg~~dsLw~-gq~~kVSpaM~~L~~wnGL~p~~~~~l~~GqeLvv 153 (356)
.+..|+|++| |+||. ++++.|++ ..|++||++.. ..+..|+ +.|
T Consensus 142 -------~~~~Y~V~~G--DTL~~IA~~fgvsv--~~L~~~N~~~~---~~~~~g~-l~I 186 (212)
T 4eby_A 142 -------LFVTYPLRPE--DSLSSIARSSGVSA--DILQRYNPGVN---FNSGNGI-VYV 186 (212)
T ss_dssp -------CEEEEECCTT--CCHHHHHHHHTSCH--HHHHHHSTTCC---TTSCSSE-EEE
T ss_pred -------CeEEEEECCC--CcHHHHHHHHCcCH--HHHHHhcCCCc---cCCCCCE-EEe
Confidence 0123999999 99999 99999988 99999999873 4556665 444
No 3
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=2.6e-13 Score=104.22 Aligned_cols=56 Identities=45% Similarity=0.565 Sum_probs=50.3
Q ss_pred CCCCeEEEEecCCCCHHHHHHHhCCCHHHHHHHhCCCCCCcccCCCEEEeCCCCCC
Q 018429 14 NGWNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRH 69 (356)
Q Consensus 14 ~~~~~i~H~VkkGDTL~~IA~KYgVsV~dIKraNnL~sd~~L~~GQ~L~IPv~~~~ 69 (356)
....++.|+|++|||||.||++|++++++|+++|++...+.|++||.|+||.....
T Consensus 11 ~~~~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~~~~ 66 (77)
T 2djp_A 11 VRERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPILTEP 66 (77)
T ss_dssp CCEEEEEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEEECCS
T ss_pred CCCCcEEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECCCCCC
Confidence 34468899999999999999999999999999999987778999999999986543
No 4
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.32 E-value=1.6e-12 Score=90.48 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=43.4
Q ss_pred eEEEEecCCCCHHHHHHHhCCCHHHHHHHhCCCCCCcccCCCEEEeCCC
Q 018429 18 YIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLP 66 (356)
Q Consensus 18 ~i~H~VkkGDTL~~IA~KYgVsV~dIKraNnL~sd~~L~~GQ~L~IPv~ 66 (356)
+..|+|++||||+.||.+||+++++|+++|+ ....|++||.|.||+.
T Consensus 2 ~~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~--~~~~l~~G~~l~ip~~ 48 (48)
T 1e0g_A 2 SITYRVRKGDSLSSIAKRHGVNIKDVMRWNS--DTANLQPGDKLTLFVK 48 (48)
T ss_dssp CCEEEECTTCCHHHHHHHHTCCHHHHHHHCS--CGGGCCTTEEEECCCC
T ss_pred CEEEEEcCCCcHHHHHHHHCcCHHHHHHhCC--CCCcCCcCCEEEEecC
Confidence 4679999999999999999999999999999 5678999999999963
No 5
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.28 E-value=2.1e-12 Score=114.29 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=64.3
Q ss_pred CeEEEEecCCCCHHHHHHHhCCCHHHHHHHhCCCCCCcccCCCEEEeCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCc
Q 018429 17 NYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPLPGRHPPSPSLSDGSSSSGENSMERTPPRLGY 96 (356)
Q Consensus 17 ~~i~H~VkkGDTL~~IA~KYgVsV~dIKraNnL~sd~~L~~GQ~L~IPv~~~~~~s~~~s~~s~~~~e~k~~~aq~~~~~ 96 (356)
....|+|++|||||.||++|+|++.+|+++|+|...+.|++||.|.||.....+.. .. .....
T Consensus 61 ~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~~~~~~~---~~--------------~~~~~ 123 (167)
T 2l9y_A 61 GTATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVPTKGGSGGG---AG--------------NFWDS 123 (167)
T ss_dssp SCEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEESCCCCCSSS---SC--------------CGGGG
T ss_pred CCceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEEcCCCCcccc---cc--------------ccccc
Confidence 45789999999999999999999999999999998899999999999975432110 00 00000
Q ss_pred chhhhhcccccccCCCCCCCcc-ccccccC
Q 018429 97 SNILQSLESLRTESSKKGSLAT-GTSQKVS 125 (356)
Q Consensus 97 ~~~le~~~s~~vKsg~~dsLw~-gq~~kVS 125 (356)
... -|.|++| |+||. ++++.++
T Consensus 124 ~~~-----~~~v~~G--dtL~aIA~r~G~~ 146 (167)
T 2l9y_A 124 ARD-----VRLVDGG--KVLEAELRYSGGW 146 (167)
T ss_dssp EEE-----EEEETTT--TEEEEEEEETTEE
T ss_pred cce-----EEEeCCc--CChHHHHHHcCCc
Confidence 011 2678899 99999 7777754
No 6
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=99.27 E-value=7.1e-13 Score=128.50 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=86.7
Q ss_pred CCeEEEEecCCCCHHHHHHHhCCCHHHHHHHhCCCC----CCcccCCCEEEeCCCCCCCCCC---CCCCCC---CC-CCC
Q 018429 16 WNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLAT----DLQMFALKTLHIPLPGRHPPSP---SLSDGS---SS-SGE 84 (356)
Q Consensus 16 ~~~i~H~VkkGDTL~~IA~KYgVsV~dIKraNnL~s----d~~L~~GQ~L~IPv~~~~~~s~---~~s~~s---~~-~~e 84 (356)
..|..|+|++||||+.||++|||++++|+++|++.. .+.|++||.|.||......... ..+... .. ...
T Consensus 5 ~~~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 84 (361)
T 2gu1_A 5 PKRIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMMDDMGQLSRLIYHMSIVEKAIYTREND 84 (361)
T ss_dssp --CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEECTTSCEEEEEEEEETTEEEEEEECTT
T ss_pred CCceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEECCCCcceEEEEEcCccceEEEEecCC
Confidence 368899999999999999999999999999999853 2679999999999753221000 000000 00 000
Q ss_pred CCcccCC-CCCCcchhhhhcccccccCCCCCCCcc-ccccccChhHHHHHHHhCCCCCC---CCCCCCCceEEEeeC
Q 018429 85 NSMERTP-PRLGYSNILQSLESLRTESSKKGSLAT-GTSQKVSSAMSNLQKYYGLRSPN---GKGKDEGTEMAVYRT 156 (356)
Q Consensus 85 ~k~~~aq-~~~~~~~~le~~~s~~vKsg~~dsLw~-gq~~kVSpaM~~L~~wnGL~p~~---~~~l~~GqeLvv~~~ 156 (356)
+.+.... ..... . ....|+++.+ |+||. ++++.|++ ..|++||+|...+ ...|++|+++.|+..
T Consensus 85 g~f~~~~~~~~~~--~--~~~~~~v~ig--dSL~~iA~~~Gvs~--~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~~ 153 (361)
T 2gu1_A 85 GSFSYDFQEISGE--W--REILFSGEIN--GSFSVSARRVGLTS--SQVANITQVMKDKIDFSRSLRAGDRFDILVK 153 (361)
T ss_dssp SCEEEEEEECCCE--E--EEEEEEEESS--SCHHHHHHHTTCCH--HHHHHHHHHHTTTCCTTTCCCC-CEEEEEEE
T ss_pred CcceeeecccCce--E--EEEEEEEEEC--CcHHHHHHHcCCCH--HHHHHHHHhhcccccccccCCCCCEEEEEEE
Confidence 0000000 00000 0 0113677788 99999 99999999 9999999997621 156999999998754
No 7
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.37 E-value=3e-07 Score=80.67 Aligned_cols=47 Identities=23% Similarity=0.276 Sum_probs=42.5
Q ss_pred eEEEEecCCCCHHHHHHHhCCCHHHHHHHhCCCCCCcccCCCEEEeCC
Q 018429 18 YIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATDLQMFALKTLHIPL 65 (356)
Q Consensus 18 ~i~H~VkkGDTL~~IA~KYgVsV~dIKraNnL~sd~~L~~GQ~L~IPv 65 (356)
++.|+|++||||+.||++|++...+|+++|.-. +..|.+|++|+||.
T Consensus 2 ~~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~v-d~~l~~g~~i~ip~ 48 (165)
T 4a1k_A 2 MLTYQVKQGDTLNSIAADFRISTAALLQANPSL-QAGLTAGQSIVIPG 48 (165)
T ss_dssp CEEEECCTTCCHHHHHHHTTCCHHHHHHHCGGG-GGCCCTTCEEEETT
T ss_pred CEEEEECCCCCHHHHHHHhCCCHHHHHHhCccC-CCccCCCccccCcc
Confidence 678999999999999999999999999999765 34588999999995
No 8
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.63 E-value=2.4e-05 Score=59.61 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=42.2
Q ss_pred cccccCCCCCCCcc-ccccccChhHHHHHHHhCCCCCCCCCCCCCceEEEeeCC
Q 018429 105 SLRTESSKKGSLAT-GTSQKVSSAMSNLQKYYGLRSPNGKGKDEGTEMAVYRTG 157 (356)
Q Consensus 105 s~~vKsg~~dsLw~-gq~~kVSpaM~~L~~wnGL~p~~~~~l~~GqeLvv~~~~ 157 (356)
.|+|++| |+||. ++++.|++ ..|++||+|.. .+.+.+||+|.|-...
T Consensus 17 ~y~V~~G--DTL~~IA~~~~~~~--~~l~~~N~l~~--~~~l~~Gq~l~iP~~~ 64 (77)
T 2djp_A 17 EHQLEPG--DTLAGLALKYGVTM--EQIKRANRLYT--NDSIFLKKTLYIPILT 64 (77)
T ss_dssp EECCCTT--CCHHHHHHHHTCCH--HHHHHHHTCCC--SSCGGGSSCEEEEEEC
T ss_pred EEEECCC--CcHHHHHHHHCcCH--HHHHHHcCCCC--ccccCCCCEEEECCCC
Confidence 4899999 99999 99999988 99999999985 5789999999997644
No 9
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=97.47 E-value=6.4e-05 Score=72.81 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=42.4
Q ss_pred eEEEEecCCCCHHHHHHHhCCCHHHHHHHhCCCCC-----CcccCCCEEEeCCC
Q 018429 18 YIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLATD-----LQMFALKTLHIPLP 66 (356)
Q Consensus 18 ~i~H~VkkGDTL~~IA~KYgVsV~dIKraNnL~sd-----~~L~~GQ~L~IPv~ 66 (356)
...|.|+.|||||.||++||+++++|+++|++... ..|++|++|.|+..
T Consensus 100 ~~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~~~ 153 (361)
T 2gu1_A 100 EILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDILVK 153 (361)
T ss_dssp EEEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEEEE
T ss_pred EEEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEEEE
Confidence 34689999999999999999999999999998753 46999999999975
No 10
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=97.17 E-value=0.00013 Score=64.31 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=42.6
Q ss_pred cccccCCCCCCCcc-ccccccChhHHHHHHHhCCCCCCCCCCCCCceEEEeeCC
Q 018429 105 SLRTESSKKGSLAT-GTSQKVSSAMSNLQKYYGLRSPNGKGKDEGTEMAVYRTG 157 (356)
Q Consensus 105 s~~vKsg~~dsLw~-gq~~kVSpaM~~L~~wnGL~p~~~~~l~~GqeLvv~~~~ 157 (356)
.|+|++| |+||. ++++.|+. ..|++||+|.. .+.+.+||+|.|...+
T Consensus 64 ~y~V~~G--DTL~~IA~~~~~~~--~~l~~~N~~~~--~~~i~~Gq~L~ip~~~ 111 (167)
T 2l9y_A 64 TVTVQQG--DTLRDIGRRFDCDF--HEIARRNNIQN--EDLIYPGQVLQVPTKG 111 (167)
T ss_dssp EEEECTT--CCHHHHHHHTTCCH--HHHHHHHTCCG--GGCCCTTEEEEESCCC
T ss_pred eEEECCC--CcHHHHHHHcCCCH--HHHHHHcCCCC--cccccCCCEEEEcCCC
Confidence 4999999 99999 99999987 99999999987 6899999999997543
No 11
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=97.13 E-value=8.6e-05 Score=50.97 Aligned_cols=42 Identities=12% Similarity=0.342 Sum_probs=37.7
Q ss_pred cccccCCCCCCCcc-ccccccChhHHHHHHHhCCCCCCCCCCCCCceEEEe
Q 018429 105 SLRTESSKKGSLAT-GTSQKVSSAMSNLQKYYGLRSPNGKGKDEGTEMAVY 154 (356)
Q Consensus 105 s~~vKsg~~dsLw~-gq~~kVSpaM~~L~~wnGL~p~~~~~l~~GqeLvv~ 154 (356)
.|+|++| |+||. ++++.++. ..|+.+|+ . .+.+.+||+|.|.
T Consensus 4 ~y~V~~G--Dtl~~Ia~~~~~~~--~~l~~~N~-~---~~~l~~G~~l~ip 46 (48)
T 1e0g_A 4 TYRVRKG--DSLSSIAKRHGVNI--KDVMRWNS-D---TANLQPGDKLTLF 46 (48)
T ss_dssp EEEECTT--CCHHHHHHHHTCCH--HHHHHHCS-C---GGGCCTTEEEECC
T ss_pred EEEEcCC--CcHHHHHHHHCcCH--HHHHHhCC-C---CCcCCcCCEEEEe
Confidence 4899999 99999 99999987 99999999 4 5789999999874
No 12
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.01 E-value=0.0011 Score=65.24 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=47.2
Q ss_pred CCCCCCeEEEEecCCCCHHHHHHHhCCCHHHHHHHhCCC----CCCcccCCCEEEeCCCC
Q 018429 12 GANGWNYIEHQVSKMDTLAGVAIKYGVEVADIKRLNGLA----TDLQMFALKTLHIPLPG 67 (356)
Q Consensus 12 ~~~~~~~i~H~VkkGDTL~~IA~KYgVsV~dIKraNnL~----sd~~L~~GQ~L~IPv~~ 67 (356)
.+....|..|+|++||||..|-.++|++..+|.++++.. .-..|++||.|.|....
T Consensus 8 ~~~~~~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~~~~ 67 (371)
T 3slu_A 8 GVQTAYWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVLVGG 67 (371)
T ss_dssp CCCCCEEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEEECT
T ss_pred CCCCCceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEEECC
Confidence 355568999999999999999999999999999987653 34689999999998754
No 13
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=68.07 E-value=1.5 Score=38.04 Aligned_cols=42 Identities=14% Similarity=0.322 Sum_probs=35.0
Q ss_pred ccccccCCCCCCCcc-ccccccChhHHHHHHHhC-CCCCCCCCCCCCceEEE
Q 018429 104 ESLRTESSKKGSLAT-GTSQKVSSAMSNLQKYYG-LRSPNGKGKDEGTEMAV 153 (356)
Q Consensus 104 ~s~~vKsg~~dsLw~-gq~~kVSpaM~~L~~wnG-L~p~~~~~l~~GqeLvv 153 (356)
..|+|+.| |+|++ |+++.|+. ..|+..|- ..+ -|.+|++++|
T Consensus 3 ~~y~V~~G--dtL~~IA~~f~~g~--~~l~~aNp~vd~----~l~~g~~i~i 46 (165)
T 4a1k_A 3 LTYQVKQG--DTLNSIAADFRIST--AALLQANPSLQA----GLTAGQSIVI 46 (165)
T ss_dssp EEEECCTT--CCHHHHHHHTTCCH--HHHHHHCGGGGG----CCCTTCEEEE
T ss_pred EEEEECCC--CCHHHHHHHhCCCH--HHHHHhCccCCC----ccCCCccccC
Confidence 35999999 99999 99999988 88888883 333 3688999998
No 14
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=66.38 E-value=3.3 Score=35.24 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=22.7
Q ss_pred EecCCCCHHHHHHHhCCCHHH----HHHHhCC
Q 018429 22 QVSKMDTLAGVAIKYGVEVAD----IKRLNGL 49 (356)
Q Consensus 22 ~VkkGDTL~~IA~KYgVsV~d----IKraNnL 49 (356)
.|.++|||..||.+.||+++. |.++|.+
T Consensus 91 ~~~kadTleeLA~~~gid~~~L~~TV~~yN~~ 122 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGIVVDELVQTVKNYQGY 122 (160)
T ss_dssp CSEECSSHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ceEecCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 356799999999999999775 5568854
No 15
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=50.71 E-value=8.6 Score=27.12 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=21.2
Q ss_pred ecCCCC----HHHHHHHhCCCHHHHHHHh
Q 018429 23 VSKMDT----LAGVAIKYGVEVADIKRLN 47 (356)
Q Consensus 23 VkkGDT----L~~IA~KYgVsV~dIKraN 47 (356)
+..|.+ +..||.+|||+...|.++=
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~ 46 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWL 46 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHH
Confidence 345778 9999999999999998874
No 16
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=49.04 E-value=17 Score=22.92 Aligned_cols=24 Identities=13% Similarity=-0.112 Sum_probs=21.3
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHHh
Q 018429 24 SKMDTLAGVAIKYGVEVADIKRLN 47 (356)
Q Consensus 24 kkGDTL~~IA~KYgVsV~dIKraN 47 (356)
..|-|...||..+||+...|.++=
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~ 42 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYL 42 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 578899999999999999998863
No 17
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=44.74 E-value=13 Score=24.01 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHHH
Q 018429 23 VSKMDTLAGVAIKYGVEVADIKRL 46 (356)
Q Consensus 23 VkkGDTL~~IA~KYgVsV~dIKra 46 (356)
+..|-|+..||..+||+...|.++
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~ 41 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRY 41 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHH
Confidence 457889999999999999999886
No 18
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=43.28 E-value=16 Score=27.81 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHh
Q 018429 26 MDTLAGVAIKYGVEVADIKRLN 47 (356)
Q Consensus 26 GDTL~~IA~KYgVsV~dIKraN 47 (356)
|-|+..||.+|||+...|.++=
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHH
Confidence 8899999999999999998874
No 19
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=43.06 E-value=19 Score=27.29 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.2
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHHH
Q 018429 23 VSKMDTLAGVAIKYGVEVADIKRL 46 (356)
Q Consensus 23 VkkGDTL~~IA~KYgVsV~dIKra 46 (356)
+..|.++..||++|||+...|.++
T Consensus 35 ~~~g~s~~~iA~~~gIs~sTl~rW 58 (87)
T 2elh_A 35 IHDGESKASVARDIGVPESTLRGW 58 (87)
T ss_dssp HHHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHCCCCHHHHHHHHCcCHHHHHHH
Confidence 357899999999999999999876
No 20
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=39.05 E-value=17 Score=31.29 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=17.3
Q ss_pred CCHHHHHHHhCCCHHHHHHH
Q 018429 27 DTLAGVAIKYGVEVADIKRL 46 (356)
Q Consensus 27 DTL~~IA~KYgVsV~dIKra 46 (356)
+.|..+++|||+++++|..+
T Consensus 132 ~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 132 SALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp HHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 46889999999999999764
No 21
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=38.68 E-value=21 Score=29.84 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=19.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHH
Q 018429 26 MDTLAGVAIKYGVEVADIKRL 46 (356)
Q Consensus 26 GDTL~~IA~KYgVsV~dIKra 46 (356)
|.++..||.+||+|...|.++
T Consensus 92 G~n~~eLArkYgLSer~I~~I 112 (129)
T 1rr7_A 92 GRNVSELTTRYGVTFNTVYKA 112 (129)
T ss_dssp SSCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 889999999999999998874
No 22
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=33.48 E-value=30 Score=27.59 Aligned_cols=30 Identities=7% Similarity=0.035 Sum_probs=24.5
Q ss_pred EEecCCCCHHHHHHHhCCCHHHHHHHhCCC
Q 018429 21 HQVSKMDTLAGVAIKYGVEVADIKRLNGLA 50 (356)
Q Consensus 21 H~VkkGDTL~~IA~KYgVsV~dIKraNnL~ 50 (356)
+....+.|+..+|.+|+|+.++|.++-...
T Consensus 44 ~~~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 44 AVIHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp HHHTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 344556799999999999999999987543
No 23
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=29.42 E-value=49 Score=22.23 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.6
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHH
Q 018429 24 SKMDTLAGVAIKYGVEVADIKRL 46 (356)
Q Consensus 24 kkGDTL~~IA~KYgVsV~dIKra 46 (356)
..|-|...||..+||+...+.++
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 47889999999999999998875
No 24
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=28.09 E-value=21 Score=27.57 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=19.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHh
Q 018429 26 MDTLAGVAIKYGVEVADIKRLN 47 (356)
Q Consensus 26 GDTL~~IA~KYgVsV~dIKraN 47 (356)
|.++..||.+|||+...|.++=
T Consensus 30 g~s~~~va~~~gIs~~tl~~W~ 51 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVWV 51 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHH
Confidence 3689999999999999998863
No 25
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=26.84 E-value=59 Score=31.75 Aligned_cols=44 Identities=11% Similarity=0.051 Sum_probs=36.6
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHHhCCCCCCc----ccCCCEEEeCCCC
Q 018429 24 SKMDTLAGVAIKYGVEVADIKRLNGLATDLQ----MFALKTLHIPLPG 67 (356)
Q Consensus 24 kkGDTL~~IA~KYgVsV~dIKraNnL~sd~~----L~~GQ~L~IPv~~ 67 (356)
.-.++|+..|.+.|++.+.|.+++++...+. |+.|+.+.|....
T Consensus 115 ~I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v~~~~ 162 (371)
T 3slu_A 115 VVKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLIYDS 162 (371)
T ss_dssp ECSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEEEEEE
T ss_pred EEeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEEEEEE
Confidence 3489999999999999999999987654333 7999999998754
No 26
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=23.83 E-value=38 Score=26.28 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=28.6
Q ss_pred ecCC-CCHHHHHHHhCCCHHHHH-HHhCCCCCCcccCCCEEEe
Q 018429 23 VSKM-DTLAGVAIKYGVEVADIK-RLNGLATDLQMFALKTLHI 63 (356)
Q Consensus 23 VkkG-DTL~~IA~KYgVsV~dIK-raNnL~sd~~L~~GQ~L~I 63 (356)
|+.| =++...|++|||+-..|. ++++............|.+
T Consensus 26 Vr~g~mS~~~Aak~yGVP~sTL~~RVk~~~~~~~~~~~~~~~~ 68 (70)
T 2cob_A 26 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKL 68 (70)
T ss_dssp HHTTSSCHHHHHHHHTCCHHHHHHHHHHHTTTTSSCCCSCCCC
T ss_pred HHcCCccHHHHHHHhCCChHHHHHHHHhhcccccCCcccccCC
Confidence 7888 599999999999999987 4665543333344444443
No 27
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.57 E-value=53 Score=24.83 Aligned_cols=24 Identities=4% Similarity=-0.011 Sum_probs=20.8
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHHH
Q 018429 23 VSKMDTLAGVAIKYGVEVADIKRL 46 (356)
Q Consensus 23 VkkGDTL~~IA~KYgVsV~dIKra 46 (356)
+..|-++..||.+|||+...|.++
T Consensus 30 ~~~g~s~~~ia~~lgis~~Tv~~w 53 (128)
T 1pdn_C 30 AADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHH
Confidence 457999999999999999888765
No 28
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=23.27 E-value=39 Score=33.51 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=22.6
Q ss_pred ecCCCCHHHHHHHhCCCHH----HHHHHhCC
Q 018429 23 VSKMDTLAGVAIKYGVEVA----DIKRLNGL 49 (356)
Q Consensus 23 VkkGDTL~~IA~KYgVsV~----dIKraNnL 49 (356)
+.+.|||..||.++|++.+ .|.+||.+
T Consensus 441 ~~~~~tl~ela~~~gi~~~~l~~tv~~yn~~ 471 (571)
T 1y0p_A 441 APTADSLVKLGKMEGIDGKALTETVARYNSL 471 (571)
T ss_dssp CCEESSHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 4578999999999999987 45678864
No 29
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=20.86 E-value=82 Score=21.67 Aligned_cols=23 Identities=22% Similarity=0.091 Sum_probs=19.9
Q ss_pred cCCCCHHHHHHHhCCCHHHHHHH
Q 018429 24 SKMDTLAGVAIKYGVEVADIKRL 46 (356)
Q Consensus 24 kkGDTL~~IA~KYgVsV~dIKra 46 (356)
-.|-|...||..+|++...+++.
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~ 51 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSR 51 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999999988763
No 30
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=20.39 E-value=66 Score=25.06 Aligned_cols=25 Identities=12% Similarity=-0.130 Sum_probs=22.0
Q ss_pred ecCCCCHHHHHHHhCCCHHHHHHHh
Q 018429 23 VSKMDTLAGVAIKYGVEVADIKRLN 47 (356)
Q Consensus 23 VkkGDTL~~IA~KYgVsV~dIKraN 47 (356)
+..|-+...||..|||+...|.++=
T Consensus 19 ~~~G~s~~~ia~~lgis~~Tv~r~~ 43 (141)
T 1u78_A 19 KLLNVSLHEMSRKISRSRHCIRVYL 43 (141)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 4679999999999999999998853
No 31
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=20.13 E-value=93 Score=21.88 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHH
Q 018429 25 KMDTLAGVAIKYGVEVADIKRL 46 (356)
Q Consensus 25 kGDTL~~IA~KYgVsV~dIKra 46 (356)
.|-|+..||..+|++...++..
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~ 45 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHH
Confidence 5889999999999999998874
Done!